Query 004006
Match_columns 779
No_of_seqs 730 out of 5455
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 15:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 7E-67 1.5E-71 587.7 64.8 503 248-778 380-907 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.2E-65 7E-70 574.3 65.0 481 294-778 368-874 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.7E-64 5.8E-69 581.0 53.4 510 242-776 123-682 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.6E-64 5.7E-69 581.1 52.5 505 260-777 99-651 (857)
5 PLN03081 pentatricopeptide (PP 100.0 7E-61 1.5E-65 539.3 52.5 467 295-778 86-555 (697)
6 PLN03081 pentatricopeptide (PP 100.0 9.9E-59 2.1E-63 521.9 52.5 463 248-748 97-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-32 1.1E-36 321.7 65.5 510 246-779 371-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.4E-31 9.6E-36 313.5 64.7 507 247-777 338-863 (899)
9 PRK11447 cellulose synthase su 100.0 4.4E-24 9.5E-29 252.9 65.5 513 247-777 71-737 (1157)
10 PRK11447 cellulose synthase su 100.0 5.9E-24 1.3E-28 251.8 63.4 488 264-777 45-697 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 2.1E-24 4.5E-29 214.1 41.5 482 268-766 19-505 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 8.9E-24 1.9E-28 209.7 36.5 387 295-695 115-504 (966)
13 PRK09782 bacteriophage N4 rece 99.9 7.4E-21 1.6E-25 214.5 60.2 489 238-777 44-703 (987)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-20 3.6E-25 208.9 54.0 431 298-745 129-571 (615)
15 KOG2002 TPR-containing nuclear 99.9 2.2E-20 4.7E-25 196.0 47.3 515 248-778 209-796 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 8.9E-20 1.9E-24 203.0 52.4 427 333-777 129-568 (615)
17 KOG2002 TPR-containing nuclear 99.9 5.2E-19 1.1E-23 185.9 48.4 504 264-775 181-740 (1018)
18 PRK11788 tetratricopeptide rep 99.9 8.9E-21 1.9E-25 200.7 34.9 312 444-768 43-364 (389)
19 PRK09782 bacteriophage N4 rece 99.9 7.5E-18 1.6E-22 190.4 56.5 494 264-776 125-736 (987)
20 PRK15174 Vi polysaccharide exp 99.9 1.4E-18 3E-23 192.5 49.1 333 299-640 45-381 (656)
21 PRK11788 tetratricopeptide rep 99.9 4.6E-20 1E-24 195.2 35.5 291 264-575 52-352 (389)
22 PRK10049 pgaA outer membrane p 99.9 4.5E-18 9.7E-23 192.7 53.1 424 295-761 14-470 (765)
23 PRK15174 Vi polysaccharide exp 99.9 1.9E-18 4.1E-23 191.4 46.5 335 332-676 43-382 (656)
24 PRK14574 hmsH outer membrane p 99.9 6.8E-17 1.5E-21 178.9 56.1 448 296-756 34-522 (822)
25 PRK10049 pgaA outer membrane p 99.9 1.4E-17 3E-22 188.7 52.1 388 282-710 32-456 (765)
26 PRK14574 hmsH outer membrane p 99.9 1.3E-16 2.7E-21 176.8 54.7 442 244-719 40-520 (822)
27 KOG2003 TPR repeat-containing 99.8 3.4E-16 7.3E-21 150.5 37.5 460 298-767 203-710 (840)
28 KOG2076 RNA polymerase III tra 99.8 5.1E-15 1.1E-19 155.3 48.4 471 302-777 145-692 (895)
29 KOG0495 HAT repeat protein [RN 99.8 1.8E-13 4E-18 138.1 53.5 450 311-776 391-876 (913)
30 KOG0495 HAT repeat protein [RN 99.8 6.6E-14 1.4E-18 141.2 50.1 466 264-745 393-880 (913)
31 KOG2076 RNA polymerase III tra 99.8 2.5E-14 5.5E-19 150.2 49.0 492 247-767 149-721 (895)
32 KOG1915 Cell cycle control pro 99.8 4.3E-13 9.3E-18 130.4 48.5 473 238-743 68-583 (677)
33 KOG2003 TPR repeat-containing 99.8 2.9E-15 6.3E-20 144.2 33.2 437 332-777 202-686 (840)
34 KOG4422 Uncharacterized conser 99.8 5.4E-14 1.2E-18 134.8 40.9 446 296-764 116-609 (625)
35 KOG1915 Cell cycle control pro 99.8 7.6E-13 1.7E-17 128.7 48.3 450 296-759 73-548 (677)
36 KOG4422 Uncharacterized conser 99.8 2.2E-14 4.9E-19 137.4 37.3 119 295-417 206-328 (625)
37 PLN03134 glycine-rich RNA-bind 99.7 1.4E-17 3.1E-22 143.6 10.6 84 151-237 34-117 (144)
38 KOG1155 Anaphase-promoting com 99.7 7.9E-13 1.7E-17 128.5 42.5 363 396-774 159-530 (559)
39 KOG1155 Anaphase-promoting com 99.7 5E-13 1.1E-17 129.9 41.0 384 360-763 158-552 (559)
40 KOG0547 Translocase of outer m 99.7 1.2E-13 2.6E-18 134.9 34.5 419 299-744 118-565 (606)
41 KOG0122 Translation initiation 99.7 4.5E-16 9.7E-21 136.8 11.7 84 148-234 186-269 (270)
42 KOG0547 Translocase of outer m 99.7 5.7E-13 1.2E-17 130.3 33.6 417 242-709 118-565 (606)
43 KOG1173 Anaphase-promoting com 99.7 1.8E-12 3.9E-17 129.4 37.1 450 295-763 48-534 (611)
44 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.9E-15 4.2E-20 156.7 16.4 82 151-235 269-350 (352)
45 KOG0125 Ataxin 2-binding prote 99.6 2.5E-15 5.3E-20 137.9 14.1 83 151-238 96-178 (376)
46 KOG0149 Predicted RNA-binding 99.6 2.1E-16 4.6E-21 138.6 6.2 78 152-233 13-90 (247)
47 KOG1126 DNA-binding cell divis 99.6 9.7E-14 2.1E-18 141.5 25.8 283 312-604 335-619 (638)
48 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.7E-17 137.6 34.6 226 548-776 160-395 (409)
49 KOG1126 DNA-binding cell divis 99.6 8.4E-14 1.8E-18 141.9 24.5 287 449-746 332-621 (638)
50 COG2956 Predicted N-acetylgluc 99.6 5.8E-12 1.3E-16 117.0 32.3 286 414-709 48-346 (389)
51 KOG1173 Anaphase-promoting com 99.6 3.2E-11 6.9E-16 120.7 39.4 466 295-776 15-514 (611)
52 COG2956 Predicted N-acetylgluc 99.6 4.9E-12 1.1E-16 117.5 31.3 300 332-639 37-346 (389)
53 KOG3785 Uncharacterized conser 99.6 7.3E-12 1.6E-16 117.4 32.7 423 301-756 62-499 (557)
54 KOG1156 N-terminal acetyltrans 99.6 1.8E-10 4E-15 117.2 45.0 433 300-747 12-470 (700)
55 TIGR00540 hemY_coli hemY prote 99.6 7.1E-12 1.5E-16 131.9 36.8 291 379-673 97-397 (409)
56 PRK10747 putative protoheme IX 99.6 1E-11 2.2E-16 129.9 37.4 252 412-674 129-389 (398)
57 KOG3785 Uncharacterized conser 99.6 5.7E-12 1.2E-16 118.2 30.9 446 303-777 29-487 (557)
58 PRK10747 putative protoheme IX 99.6 7.6E-12 1.6E-16 130.9 36.1 283 449-743 97-388 (398)
59 TIGR01659 sex-lethal sex-letha 99.6 3.2E-14 7E-19 141.9 17.3 83 149-234 105-187 (346)
60 KOG0113 U1 small nuclear ribon 99.6 4.4E-15 9.5E-20 134.5 9.1 86 149-237 99-184 (335)
61 KOG0121 Nuclear cap-binding pr 99.6 3.2E-15 7E-20 116.8 7.1 87 144-233 29-115 (153)
62 KOG1156 N-terminal acetyltrans 99.6 2.4E-10 5.1E-15 116.4 43.5 450 264-743 24-509 (700)
63 PF13429 TPR_15: Tetratricopep 99.6 1E-14 2.2E-19 145.8 12.7 259 477-742 14-274 (280)
64 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.8E-19 145.0 12.8 258 512-776 14-273 (280)
65 KOG0148 Apoptosis-promoting RN 99.6 3.2E-15 6.8E-20 133.3 7.2 82 151-235 62-143 (321)
66 COG3071 HemY Uncharacterized e 99.6 1.4E-10 2.9E-15 111.7 38.4 286 379-674 97-389 (400)
67 PF00076 RRM_1: RNA recognitio 99.6 1.6E-14 3.5E-19 110.1 8.8 70 154-227 1-70 (70)
68 KOG0146 RNA-binding protein ET 99.5 2.1E-14 4.5E-19 127.5 9.3 87 146-235 280-366 (371)
69 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2.1E-14 4.6E-19 148.9 10.3 82 151-235 3-84 (352)
70 PLN03213 repressor of silencin 99.5 2.8E-14 6.1E-19 137.9 9.2 81 151-238 10-92 (759)
71 KOG2047 mRNA splicing factor [ 99.5 1.2E-08 2.5E-13 103.9 49.0 434 333-777 104-612 (835)
72 KOG0107 Alternative splicing f 99.5 2.8E-14 6E-19 118.8 7.6 79 151-237 10-88 (195)
73 KOG0126 Predicted RNA-binding 99.5 1.7E-15 3.6E-20 126.4 0.3 82 148-232 32-113 (219)
74 KOG4207 Predicted splicing fac 99.5 1.9E-14 4E-19 122.9 6.4 80 151-233 13-92 (256)
75 PLN03120 nucleic acid binding 99.5 6.2E-14 1.3E-18 128.8 10.0 75 151-232 4-78 (260)
76 KOG2047 mRNA splicing factor [ 99.5 6.4E-09 1.4E-13 105.8 45.7 481 281-775 84-682 (835)
77 KOG0111 Cyclophilin-type pepti 99.5 1.1E-14 2.3E-19 125.3 4.1 83 152-237 11-93 (298)
78 TIGR01645 half-pint poly-U bin 99.5 5.5E-14 1.2E-18 147.6 10.1 81 149-232 105-185 (612)
79 PRK12370 invasion protein regu 99.5 1.6E-11 3.4E-16 134.4 29.1 218 261-499 275-501 (553)
80 TIGR01645 half-pint poly-U bin 99.5 8.5E-14 1.8E-18 146.2 10.7 82 150-234 203-284 (612)
81 KOG4318 Bicoid mRNA stability 99.5 4.8E-11 1E-15 125.2 30.6 458 292-776 21-590 (1088)
82 KOG0117 Heterogeneous nuclear 99.5 6.9E-14 1.5E-18 134.1 8.9 83 149-234 81-164 (506)
83 PF14259 RRM_6: RNA recognitio 99.5 1.3E-13 2.9E-18 104.5 8.7 70 154-227 1-70 (70)
84 KOG0145 RNA-binding protein EL 99.5 1.6E-13 3.5E-18 121.4 10.0 81 152-235 42-122 (360)
85 KOG2376 Signal recognition par 99.5 2.3E-09 5E-14 108.1 39.6 446 248-742 22-517 (652)
86 COG3071 HemY Uncharacterized e 99.5 5.7E-10 1.2E-14 107.5 33.6 292 414-743 97-388 (400)
87 TIGR01659 sex-lethal sex-letha 99.5 2.1E-13 4.5E-18 136.2 10.3 82 151-235 193-276 (346)
88 KOG0148 Apoptosis-promoting RN 99.5 1.7E-13 3.7E-18 122.4 8.5 78 149-235 162-239 (321)
89 KOG0130 RNA-binding protein RB 99.4 1.4E-13 3E-18 108.7 6.0 84 146-232 67-150 (170)
90 KOG1127 TPR repeat-containing 99.4 1.2E-09 2.6E-14 116.3 35.6 488 264-774 475-1030(1238)
91 PLN03121 nucleic acid binding 99.4 5.9E-13 1.3E-17 120.0 9.4 75 150-231 4-78 (243)
92 KOG0548 Molecular co-chaperone 99.4 1.2E-09 2.6E-14 109.2 33.5 426 302-763 8-471 (539)
93 KOG1129 TPR repeat-containing 99.4 6.3E-11 1.4E-15 110.2 22.4 234 334-573 226-461 (478)
94 KOG2376 Signal recognition par 99.4 7.2E-09 1.6E-13 104.7 38.6 451 301-777 17-517 (652)
95 KOG0131 Splicing factor 3b, su 99.4 2.4E-13 5.2E-18 114.1 5.9 82 148-232 6-87 (203)
96 KOG1127 TPR repeat-containing 99.4 1E-09 2.2E-14 116.8 33.8 362 252-636 499-909 (1238)
97 KOG1174 Anaphase-promoting com 99.4 2E-08 4.3E-13 96.9 39.1 434 259-711 55-501 (564)
98 PF12569 NARP1: NMDA receptor- 99.4 1.2E-08 2.5E-13 107.7 41.5 293 302-604 10-333 (517)
99 KOG0114 Predicted RNA-binding 99.4 1.7E-12 3.8E-17 97.5 9.2 77 152-234 19-95 (124)
100 KOG0226 RNA-binding proteins [ 99.4 8.3E-12 1.8E-16 110.9 14.8 90 137-229 176-265 (290)
101 KOG4162 Predicted calmodulin-b 99.4 1.4E-08 3E-13 106.0 40.5 405 362-775 319-778 (799)
102 PRK12370 invasion protein regu 99.4 2E-10 4.4E-15 125.7 29.2 217 346-569 276-501 (553)
103 KOG4162 Predicted calmodulin-b 99.4 9.6E-09 2.1E-13 107.1 39.1 428 308-745 296-783 (799)
104 KOG0144 RNA-binding protein CU 99.4 2.4E-12 5.2E-17 123.0 12.0 82 152-235 35-118 (510)
105 KOG1174 Anaphase-promoting com 99.4 4E-08 8.7E-13 94.8 40.1 292 446-745 206-500 (564)
106 TIGR01628 PABP-1234 polyadenyl 99.4 1E-12 2.3E-17 144.6 10.6 78 153-233 2-79 (562)
107 TIGR02521 type_IV_pilW type IV 99.4 2.8E-10 6E-15 111.1 26.7 199 296-498 31-230 (234)
108 TIGR02521 type_IV_pilW type IV 99.4 3.4E-10 7.3E-15 110.5 26.2 199 541-743 31-230 (234)
109 PF12569 NARP1: NMDA receptor- 99.4 3.5E-09 7.7E-14 111.5 34.8 294 337-639 10-333 (517)
110 KOG4318 Bicoid mRNA stability 99.4 1E-09 2.2E-14 115.5 30.0 437 317-778 11-555 (1088)
111 KOG0145 RNA-binding protein EL 99.4 2.4E-12 5.1E-17 114.2 9.1 81 151-234 278-358 (360)
112 KOG0105 Alternative splicing f 99.4 1.2E-12 2.7E-17 109.6 6.8 81 149-235 4-84 (241)
113 KOG0124 Polypyrimidine tract-b 99.4 5.7E-13 1.2E-17 123.9 4.6 77 151-230 113-189 (544)
114 TIGR01648 hnRNP-R-Q heterogene 99.3 2.3E-12 5E-17 135.5 9.1 78 151-232 58-136 (578)
115 KOG1129 TPR repeat-containing 99.3 4.4E-10 9.5E-15 104.6 22.8 229 475-709 227-457 (478)
116 KOG0108 mRNA cleavage and poly 99.3 2.5E-12 5.4E-17 129.5 8.6 81 152-235 19-99 (435)
117 smart00362 RRM_2 RNA recogniti 99.3 6.9E-12 1.5E-16 96.3 9.3 72 153-229 1-72 (72)
118 TIGR01628 PABP-1234 polyadenyl 99.3 4E-12 8.7E-17 140.0 11.0 85 149-237 283-367 (562)
119 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.5E-11 3.2E-16 134.6 13.9 82 150-234 294-375 (509)
120 smart00360 RRM RNA recognition 99.3 9.2E-12 2E-16 95.3 8.3 71 156-229 1-71 (71)
121 KOG0127 Nucleolar protein fibr 99.3 1E-11 2.2E-16 122.4 10.1 93 147-240 288-384 (678)
122 TIGR01622 SF-CC1 splicing fact 99.3 7.6E-12 1.7E-16 134.6 10.4 81 151-234 186-266 (457)
123 smart00361 RRM_1 RNA recogniti 99.3 1.3E-11 2.7E-16 92.6 7.9 62 165-229 2-70 (70)
124 KOG4340 Uncharacterized conser 99.3 3.9E-09 8.4E-14 97.2 24.7 416 299-744 13-442 (459)
125 KOG0131 Splicing factor 3b, su 99.3 5.7E-12 1.2E-16 106.0 5.7 86 146-234 91-177 (203)
126 KOG1840 Kinesin light chain [C 99.3 2.5E-09 5.5E-14 111.0 26.4 237 507-743 200-477 (508)
127 COG3063 PilF Tfp pilus assembl 99.3 6.6E-09 1.4E-13 92.8 25.0 199 298-500 37-236 (250)
128 KOG1840 Kinesin light chain [C 99.3 1.3E-09 2.9E-14 113.1 24.2 236 473-708 201-477 (508)
129 KOG0548 Molecular co-chaperone 99.3 2.9E-08 6.4E-13 99.6 32.1 420 248-726 12-470 (539)
130 KOG4340 Uncharacterized conser 99.3 7.4E-09 1.6E-13 95.4 25.2 394 288-710 36-443 (459)
131 TIGR01622 SF-CC1 splicing fact 99.2 2E-11 4.3E-16 131.4 10.3 81 149-233 87-167 (457)
132 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 2.5E-11 5.3E-16 129.7 10.1 78 151-235 2-79 (481)
133 KOG3617 WD40 and TPR repeat-co 99.2 1.7E-07 3.8E-12 98.0 37.2 240 302-567 832-1106(1416)
134 PF13893 RRM_5: RNA recognitio 99.2 5.2E-11 1.1E-15 85.0 8.2 56 168-231 1-56 (56)
135 KOG0624 dsRNA-activated protei 99.2 2.6E-07 5.6E-12 87.2 34.0 317 366-711 38-371 (504)
136 KOG0109 RNA-binding protein LA 99.2 1.8E-11 3.8E-16 111.0 5.9 71 153-234 4-74 (346)
137 cd00590 RRM RRM (RNA recogniti 99.2 1.1E-10 2.3E-15 90.1 9.7 74 153-230 1-74 (74)
138 KOG0415 Predicted peptidyl pro 99.2 2.3E-11 5.1E-16 113.0 6.4 84 148-234 236-319 (479)
139 TIGR01648 hnRNP-R-Q heterogene 99.2 5.8E-11 1.3E-15 125.1 10.0 75 150-235 232-308 (578)
140 COG3063 PilF Tfp pilus assembl 99.2 2.7E-08 5.8E-13 88.9 24.7 209 543-757 37-246 (250)
141 PRK11189 lipoprotein NlpI; Pro 99.2 4.4E-08 9.6E-13 98.0 29.8 218 264-501 43-266 (296)
142 KOG0147 Transcriptional coacti 99.2 2.5E-11 5.4E-16 120.6 6.2 82 153-237 280-361 (549)
143 PRK11189 lipoprotein NlpI; Pro 99.2 2.1E-08 4.6E-13 100.3 27.2 218 310-536 40-266 (296)
144 COG0724 RNA-binding proteins ( 99.2 7.2E-11 1.6E-15 120.4 9.7 79 151-232 115-193 (306)
145 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 2.5E-10 5.4E-15 122.1 13.5 77 150-234 274-351 (481)
146 KOG1914 mRNA cleavage and poly 99.2 9.4E-06 2E-10 81.8 44.1 444 295-767 19-526 (656)
147 KOG0144 RNA-binding protein CU 99.2 1.5E-10 3.3E-15 110.9 10.5 88 145-235 418-505 (510)
148 PF13041 PPR_2: PPR repeat fam 99.1 1.3E-10 2.8E-15 80.5 6.8 50 714-763 1-50 (50)
149 KOG2053 Mitochondrial inherita 99.1 2.4E-05 5.3E-10 83.8 51.5 217 264-501 26-256 (932)
150 KOG0127 Nucleolar protein fibr 99.1 6.8E-11 1.5E-15 116.7 6.8 81 152-235 6-86 (678)
151 cd05804 StaR_like StaR_like; a 99.1 3E-07 6.5E-12 96.0 34.6 202 296-500 6-215 (355)
152 KOG3617 WD40 and TPR repeat-co 99.1 2.7E-07 6E-12 96.6 32.7 406 295-769 725-1189(1416)
153 KOG0116 RasGAP SH3 binding pro 99.1 9.5E-10 2.1E-14 110.3 14.3 88 148-239 285-372 (419)
154 PF13041 PPR_2: PPR repeat fam 99.1 1.8E-10 3.8E-15 79.9 6.4 50 329-378 1-50 (50)
155 KOG0109 RNA-binding protein LA 99.1 4E-11 8.8E-16 108.7 3.7 76 150-236 77-152 (346)
156 KOG0117 Heterogeneous nuclear 99.1 1.3E-10 2.9E-15 112.0 7.3 79 150-239 258-336 (506)
157 KOG4206 Spliceosomal protein s 99.1 2.2E-10 4.7E-15 101.2 7.5 79 150-234 8-90 (221)
158 KOG1914 mRNA cleavage and poly 99.1 3.5E-06 7.5E-11 84.8 36.9 427 322-777 12-498 (656)
159 KOG4208 Nucleolar RNA-binding 99.1 3E-10 6.6E-15 98.3 7.6 82 150-234 48-130 (214)
160 KOG0624 dsRNA-activated protei 99.1 2.9E-06 6.2E-11 80.3 34.2 316 295-641 37-371 (504)
161 KOG1125 TPR repeat-containing 99.1 3.1E-08 6.8E-13 100.2 22.6 220 373-601 292-523 (579)
162 KOG3616 Selective LIM binding 99.1 5.9E-07 1.3E-11 92.9 32.0 403 304-774 498-931 (1636)
163 KOG0985 Vesicle coat protein c 99.1 3.3E-06 7.2E-11 90.7 38.2 333 352-729 968-1326(1666)
164 KOG0146 RNA-binding protein ET 99.1 3E-10 6.5E-15 101.5 7.2 85 150-238 18-105 (371)
165 cd05804 StaR_like StaR_like; a 99.1 1.2E-06 2.6E-11 91.4 35.2 199 332-534 7-214 (355)
166 PLN02789 farnesyltranstransfer 99.0 1.3E-07 2.7E-12 94.3 25.3 200 264-483 54-267 (320)
167 KOG1457 RNA binding protein (c 99.0 2E-09 4.3E-14 93.8 10.4 86 152-239 35-123 (284)
168 KOG0985 Vesicle coat protein c 99.0 1.6E-05 3.4E-10 85.8 41.0 261 293-599 981-1243(1666)
169 KOG2053 Mitochondrial inherita 99.0 7.5E-05 1.6E-09 80.2 47.2 226 306-538 19-258 (932)
170 KOG4205 RNA-binding protein mu 99.0 1.9E-10 4.2E-15 110.7 4.4 86 150-239 5-90 (311)
171 KOG1924 RhoA GTPase effector D 99.0 2.4E-06 5.3E-11 88.9 33.6 21 399-419 836-856 (1102)
172 PLN02789 farnesyltranstransfer 99.0 3.7E-07 8E-12 91.0 27.3 214 299-518 40-267 (320)
173 KOG3616 Selective LIM binding 99.0 2.6E-06 5.7E-11 88.3 32.5 265 444-745 740-1024(1636)
174 PRK04841 transcriptional regul 99.0 2.1E-06 4.5E-11 101.8 37.5 373 298-676 343-761 (903)
175 PRK04841 transcriptional regul 99.0 3.7E-06 7.9E-11 99.8 38.7 372 372-745 347-760 (903)
176 KOG0124 Polypyrimidine tract-b 99.0 9.4E-10 2E-14 102.8 6.5 81 148-231 207-287 (544)
177 KOG0123 Polyadenylate-binding 99.0 1.5E-09 3.2E-14 109.3 8.2 80 153-238 78-157 (369)
178 KOG1125 TPR repeat-containing 99.0 1.1E-07 2.5E-12 96.3 21.1 225 407-638 291-525 (579)
179 KOG1070 rRNA processing protei 98.9 4.7E-07 1E-11 100.5 27.2 226 295-525 1457-1690(1710)
180 KOG4212 RNA-binding protein hn 98.9 6.6E-09 1.4E-13 99.8 10.6 78 152-233 45-123 (608)
181 TIGR01642 U2AF_lg U2 snRNP aux 98.9 7.2E-09 1.6E-13 113.4 12.3 70 152-231 176-257 (509)
182 KOG0153 Predicted RNA-binding 98.9 4.4E-09 9.4E-14 98.5 8.1 74 152-233 229-302 (377)
183 PF04733 Coatomer_E: Coatomer 98.8 1.2E-07 2.6E-12 93.2 16.0 252 478-745 8-265 (290)
184 PF04733 Coatomer_E: Coatomer 98.8 1.5E-07 3.3E-12 92.6 16.4 248 307-570 12-265 (290)
185 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.9E-08 4E-13 100.0 9.8 86 150-238 404-489 (940)
186 KOG0132 RNA polymerase II C-te 98.8 9.3E-09 2E-13 106.5 7.9 79 151-238 421-499 (894)
187 KOG0110 RNA-binding protein (R 98.8 2E-08 4.3E-13 103.4 10.1 81 150-232 514-596 (725)
188 KOG1070 rRNA processing protei 98.8 4.7E-06 1E-10 92.8 27.6 204 330-538 1457-1666(1710)
189 KOG1128 Uncharacterized conser 98.8 6.3E-07 1.4E-11 93.4 19.5 190 298-499 426-615 (777)
190 KOG4212 RNA-binding protein hn 98.8 1.2E-08 2.7E-13 98.0 6.6 77 147-231 532-608 (608)
191 KOG1128 Uncharacterized conser 98.8 7.8E-06 1.7E-10 85.5 27.1 234 438-692 400-634 (777)
192 KOG0110 RNA-binding protein (R 98.7 1.1E-08 2.3E-13 105.4 4.8 82 151-235 613-694 (725)
193 KOG0106 Alternative splicing f 98.7 5.3E-09 1.2E-13 93.9 2.0 72 152-234 2-73 (216)
194 KOG4205 RNA-binding protein mu 98.7 1.6E-08 3.4E-13 97.7 5.4 83 151-237 97-179 (311)
195 TIGR03302 OM_YfiO outer membra 98.7 2.4E-06 5.1E-11 83.1 20.8 186 295-500 32-232 (235)
196 PRK14720 transcript cleavage f 98.7 9.3E-06 2E-10 90.2 27.0 220 294-551 29-267 (906)
197 KOG0123 Polyadenylate-binding 98.7 3.6E-08 7.8E-13 99.4 7.8 74 152-234 2-75 (369)
198 PRK14720 transcript cleavage f 98.7 6.9E-06 1.5E-10 91.1 25.4 246 322-622 21-268 (906)
199 COG5010 TadD Flp pilus assembl 98.7 4.2E-06 9E-11 77.0 19.7 160 580-743 70-229 (257)
200 PRK15359 type III secretion sy 98.6 1.1E-06 2.3E-11 77.2 14.8 123 266-409 12-134 (144)
201 KOG1548 Transcription elongati 98.6 1.2E-07 2.6E-12 88.9 7.7 79 150-232 133-219 (382)
202 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.4E-10 74.4 20.0 157 300-460 70-226 (257)
203 TIGR03302 OM_YfiO outer membra 98.6 8.7E-06 1.9E-10 79.2 21.2 187 330-535 32-232 (235)
204 PRK10370 formate-dependent nit 98.6 7.5E-06 1.6E-10 76.0 19.5 149 303-466 23-174 (198)
205 KOG4209 Splicing factor RNPS1, 98.6 6.2E-08 1.3E-12 90.2 5.5 81 150-234 100-180 (231)
206 PRK10370 formate-dependent nit 98.6 1.3E-05 2.9E-10 74.4 20.7 115 592-709 55-172 (198)
207 KOG0533 RRM motif-containing p 98.5 2.5E-07 5.4E-12 85.6 8.0 83 152-238 84-166 (243)
208 KOG3081 Vesicle coat complex C 98.5 6.8E-05 1.5E-09 69.1 22.6 151 443-604 115-270 (299)
209 KOG3081 Vesicle coat complex C 98.5 7.2E-05 1.6E-09 68.9 22.3 150 584-744 116-270 (299)
210 PRK15359 type III secretion sy 98.5 1.4E-05 3E-10 70.2 17.5 91 652-744 30-120 (144)
211 KOG4660 Protein Mei2, essentia 98.5 1.6E-07 3.4E-12 94.5 5.5 70 150-227 74-143 (549)
212 KOG0151 Predicted splicing reg 98.5 4.6E-07 1E-11 93.1 8.7 84 149-234 172-257 (877)
213 KOG4454 RNA binding protein (R 98.5 7.7E-08 1.7E-12 83.9 2.7 78 152-234 10-87 (267)
214 PF12854 PPR_1: PPR repeat 98.5 2.1E-07 4.5E-12 57.6 3.8 32 746-777 2-33 (34)
215 PRK15179 Vi polysaccharide bio 98.5 6.4E-05 1.4E-09 83.1 25.4 136 327-465 82-217 (694)
216 COG5107 RNA14 Pre-mRNA 3'-end 98.4 0.0024 5.2E-08 63.5 33.6 83 295-380 41-123 (660)
217 PF12854 PPR_1: PPR repeat 98.4 2.8E-07 6E-12 57.0 3.9 32 361-392 2-33 (34)
218 COG4783 Putative Zn-dependent 98.4 4E-05 8.8E-10 76.9 20.9 118 343-463 318-435 (484)
219 PF07079 DUF1347: Protein of u 98.4 0.0031 6.7E-08 63.0 46.4 443 306-777 16-521 (549)
220 COG4783 Putative Zn-dependent 98.4 0.00018 4E-09 72.4 23.4 146 586-754 316-462 (484)
221 TIGR02552 LcrH_SycD type III s 98.4 1.9E-05 4.2E-10 69.0 15.1 111 269-396 5-115 (135)
222 PRK15179 Vi polysaccharide bio 98.3 0.00022 4.8E-09 78.9 26.3 133 540-675 85-217 (694)
223 TIGR02552 LcrH_SycD type III s 98.3 3.4E-05 7.4E-10 67.4 15.7 104 647-754 18-121 (135)
224 KOG3060 Uncharacterized conser 98.3 0.00067 1.4E-08 62.3 23.4 188 520-711 26-221 (289)
225 PF07079 DUF1347: Protein of u 98.3 0.007 1.5E-07 60.5 43.1 147 245-413 13-179 (549)
226 KOG3060 Uncharacterized conser 98.2 0.0034 7.4E-08 57.8 26.5 162 335-500 56-220 (289)
227 KOG0550 Molecular chaperone (D 98.2 0.001 2.2E-08 65.5 23.7 90 586-676 259-351 (486)
228 KOG0147 Transcriptional coacti 98.2 1.3E-06 2.8E-11 87.8 4.0 77 151-231 179-255 (549)
229 KOG1130 Predicted G-alpha GTPa 98.2 2.2E-05 4.9E-10 76.3 12.0 280 479-775 25-339 (639)
230 PF04059 RRM_2: RNA recognitio 98.2 1.5E-05 3.3E-10 62.4 8.7 78 152-232 2-85 (97)
231 PF14938 SNAP: Soluble NSF att 98.2 0.00029 6.2E-09 70.1 20.2 200 303-533 42-264 (282)
232 KOG2041 WD40 repeat protein [G 98.1 0.005 1.1E-07 64.6 28.6 58 680-737 1020-1078(1189)
233 PHA03247 large tegument protei 98.1 5.6E-05 1.2E-09 89.6 16.5 9 157-165 3002-3010(3151)
234 KOG2041 WD40 repeat protein [G 98.1 0.0046 9.9E-08 64.8 28.3 345 363-760 689-1066(1189)
235 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.7E-05 1.7E-09 76.0 15.9 126 332-463 170-295 (395)
236 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.3E-05 1.6E-09 76.2 15.7 129 365-499 168-296 (395)
237 KOG0550 Molecular chaperone (D 98.1 0.00055 1.2E-08 67.2 20.4 156 619-776 257-419 (486)
238 KOG0120 Splicing factor U2AF, 98.1 1.8E-06 3.8E-11 88.2 3.8 83 149-234 287-369 (500)
239 KOG1457 RNA binding protein (c 98.1 1.5E-05 3.2E-10 70.2 7.9 66 149-221 208-273 (284)
240 PF09976 TPR_21: Tetratricopep 98.0 0.0002 4.3E-09 63.2 14.9 24 372-395 54-77 (145)
241 PF09976 TPR_21: Tetratricopep 98.0 0.00038 8.3E-09 61.4 16.0 115 624-741 24-143 (145)
242 KOG4849 mRNA cleavage factor I 98.0 1E-05 2.3E-10 75.9 5.3 75 152-229 81-157 (498)
243 KOG1130 Predicted G-alpha GTPa 98.0 0.00017 3.7E-09 70.4 13.5 113 303-416 24-150 (639)
244 PF08777 RRM_3: RNA binding mo 97.9 3.9E-05 8.5E-10 62.0 6.9 74 151-231 1-77 (105)
245 PRK15363 pathogenicity island 97.9 0.00072 1.6E-08 58.3 14.8 91 371-463 40-130 (157)
246 KOG4211 Splicing factor hnRNP- 97.9 3.1E-05 6.7E-10 77.0 7.3 76 152-234 11-86 (510)
247 KOG3671 Actin regulatory prote 97.9 0.00087 1.9E-08 67.0 17.0 26 156-181 486-511 (569)
248 TIGR00756 PPR pentatricopeptid 97.9 3E-05 6.4E-10 48.9 4.6 33 718-750 2-34 (35)
249 PLN03088 SGT1, suppressor of 97.8 0.00049 1.1E-08 70.7 15.5 92 618-711 9-100 (356)
250 PF10037 MRP-S27: Mitochondria 97.8 0.0003 6.5E-09 72.0 13.6 122 643-764 63-186 (429)
251 PRK15363 pathogenicity island 97.8 0.00041 8.9E-09 59.8 12.2 97 332-430 36-132 (157)
252 PF12895 Apc3: Anaphase-promot 97.8 3.6E-05 7.9E-10 60.4 5.5 81 309-391 2-83 (84)
253 PF14938 SNAP: Soluble NSF att 97.8 0.0016 3.4E-08 64.9 18.1 167 338-535 42-225 (282)
254 PRK10866 outer membrane biogen 97.8 0.0076 1.6E-07 58.0 22.1 61 299-360 35-98 (243)
255 KOG4206 Spliceosomal protein s 97.8 7E-05 1.5E-09 67.0 7.3 73 152-232 147-220 (221)
256 PF10037 MRP-S27: Mitochondria 97.8 0.00034 7.4E-09 71.6 13.3 133 282-414 52-186 (429)
257 PF08579 RPM2: Mitochondrial r 97.8 0.00035 7.5E-09 55.5 10.0 80 299-378 28-116 (120)
258 PRK10866 outer membrane biogen 97.8 0.015 3.2E-07 56.1 23.4 67 331-398 32-101 (243)
259 cd00189 TPR Tetratricopeptide 97.8 0.00043 9.2E-09 55.8 11.3 94 299-394 3-96 (100)
260 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00083 1.8E-08 57.0 13.5 99 298-396 4-106 (119)
261 PF11608 Limkain-b1: Limkain b 97.7 8.5E-05 1.8E-09 54.7 5.9 67 153-232 4-75 (90)
262 KOG2796 Uncharacterized conser 97.7 0.01 2.2E-07 54.9 20.3 133 332-465 178-315 (366)
263 KOG1995 Conserved Zn-finger pr 97.7 2.6E-05 5.6E-10 74.7 4.0 84 149-235 64-155 (351)
264 PF13812 PPR_3: Pentatricopept 97.7 6.5E-05 1.4E-09 46.9 4.6 33 717-749 2-34 (34)
265 TIGR00756 PPR pentatricopeptid 97.7 5.7E-05 1.2E-09 47.5 4.3 33 333-365 2-34 (35)
266 PF12895 Apc3: Anaphase-promot 97.7 6.4E-05 1.4E-09 59.0 5.5 81 344-426 2-83 (84)
267 KOG0553 TPR repeat-containing 97.7 0.00052 1.1E-08 64.9 12.2 93 303-397 88-180 (304)
268 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0012 2.5E-08 56.1 13.9 97 334-430 5-105 (119)
269 PLN03088 SGT1, suppressor of 97.7 0.00089 1.9E-08 68.8 15.2 91 303-395 9-99 (356)
270 KOG0553 TPR repeat-containing 97.7 0.00044 9.6E-09 65.3 11.6 97 619-719 89-185 (304)
271 PF05843 Suf: Suppressor of fo 97.7 0.00063 1.4E-08 67.3 13.4 130 367-499 2-135 (280)
272 cd00189 TPR Tetratricopeptide 97.7 0.00069 1.5E-08 54.5 11.8 92 651-744 5-96 (100)
273 CHL00033 ycf3 photosystem I as 97.7 0.0016 3.4E-08 59.3 14.9 95 296-391 35-138 (168)
274 PRK02603 photosystem I assembl 97.7 0.0024 5.2E-08 58.3 16.0 129 612-766 36-166 (172)
275 COG5175 MOT2 Transcriptional r 97.7 0.00011 2.4E-09 68.9 7.0 82 151-234 114-203 (480)
276 PF13812 PPR_3: Pentatricopept 97.7 7.6E-05 1.7E-09 46.5 4.2 31 333-363 3-33 (34)
277 PRK02603 photosystem I assembl 97.6 0.002 4.3E-08 58.8 14.9 131 295-451 34-166 (172)
278 KOG4307 RNA binding protein RB 97.6 0.0014 3.1E-08 68.1 15.0 79 149-231 432-511 (944)
279 CHL00033 ycf3 photosystem I as 97.6 0.0013 2.7E-08 59.9 13.5 95 647-742 36-139 (168)
280 KOG2796 Uncharacterized conser 97.6 0.026 5.6E-07 52.3 20.7 130 614-744 180-314 (366)
281 KOG1258 mRNA processing protei 97.6 0.14 3E-06 53.9 34.7 412 295-730 44-489 (577)
282 PF05843 Suf: Suppressor of fo 97.6 0.0017 3.6E-08 64.3 14.2 130 298-430 3-136 (280)
283 KOG1258 mRNA processing protei 97.5 0.16 3.4E-06 53.4 37.3 398 264-695 62-489 (577)
284 COG4700 Uncharacterized protei 97.5 0.015 3.2E-07 50.9 17.3 132 294-427 87-219 (251)
285 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.7E-06 51.7 30.2 110 613-742 179-288 (319)
286 KOG2114 Vacuolar assembly/sort 97.5 0.026 5.7E-07 61.0 22.6 141 304-462 376-516 (933)
287 KOG1190 Polypyrimidine tract-b 97.5 0.00037 8E-09 67.6 8.3 79 151-237 297-376 (492)
288 COG3898 Uncharacterized membra 97.5 0.12 2.6E-06 51.0 30.3 63 680-744 328-391 (531)
289 PF01535 PPR: PPR repeat; Int 97.5 0.00016 3.4E-09 44.0 3.5 27 334-360 3-29 (31)
290 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.6E-09 43.8 3.6 29 718-746 2-30 (31)
291 PF13525 YfiO: Outer membrane 97.5 0.015 3.3E-07 54.5 18.4 49 512-560 147-197 (203)
292 PF08579 RPM2: Mitochondrial r 97.5 0.0028 6.2E-08 50.5 11.0 77 581-657 30-115 (120)
293 KOG2114 Vacuolar assembly/sort 97.4 0.067 1.5E-06 58.0 24.4 174 300-497 338-516 (933)
294 KOG2280 Vacuolar assembly/sort 97.4 0.15 3.3E-06 54.7 26.6 110 613-741 686-795 (829)
295 KOG0106 Alternative splicing f 97.4 8.6E-05 1.9E-09 67.3 2.6 70 150-230 98-167 (216)
296 COG4235 Cytochrome c biogenesi 97.4 0.0094 2E-07 57.0 16.1 113 643-759 153-268 (287)
297 PRK10153 DNA-binding transcrip 97.4 0.015 3.3E-07 62.6 19.8 72 679-754 418-489 (517)
298 KOG4210 Nuclear localization s 97.4 7.9E-05 1.7E-09 72.4 2.3 83 153-239 186-269 (285)
299 COG4235 Cytochrome c biogenesi 97.4 0.0093 2E-07 57.1 15.8 99 295-395 155-256 (287)
300 PF12688 TPR_5: Tetratrico pep 97.3 0.01 2.3E-07 49.4 14.0 94 301-394 6-103 (120)
301 PF04840 Vps16_C: Vps16, C-ter 97.3 0.22 4.7E-06 50.0 30.4 112 576-707 177-288 (319)
302 PF13414 TPR_11: TPR repeat; P 97.3 0.00085 1.8E-08 50.2 6.8 63 366-429 3-66 (69)
303 COG4700 Uncharacterized protei 97.3 0.083 1.8E-06 46.4 19.1 127 364-492 87-214 (251)
304 PF13525 YfiO: Outer membrane 97.3 0.03 6.4E-07 52.6 18.4 64 297-360 6-71 (203)
305 PF12688 TPR_5: Tetratrico pep 97.3 0.014 3E-07 48.7 14.2 91 652-743 7-102 (120)
306 PRK10153 DNA-binding transcrip 97.3 0.0071 1.5E-07 65.1 15.8 119 262-397 357-484 (517)
307 KOG4307 RNA binding protein RB 97.2 0.004 8.8E-08 64.9 12.4 80 148-230 863-943 (944)
308 PF06239 ECSIT: Evolutionarily 97.2 0.0055 1.2E-07 55.5 11.8 86 295-380 46-152 (228)
309 PF13432 TPR_16: Tetratricopep 97.2 0.0018 3.9E-08 47.7 7.0 57 687-744 3-59 (65)
310 PF06239 ECSIT: Evolutionarily 97.2 0.0093 2E-07 54.1 12.4 87 470-556 46-153 (228)
311 PF13414 TPR_11: TPR repeat; P 97.1 0.002 4.3E-08 48.2 7.1 62 332-394 4-66 (69)
312 PF13432 TPR_16: Tetratricopep 97.1 0.0016 3.5E-08 48.0 6.4 52 341-393 7-58 (65)
313 KOG3152 TBP-binding protein, a 97.1 0.00054 1.2E-08 62.3 4.2 74 149-225 72-157 (278)
314 KOG1538 Uncharacterized conser 97.1 0.044 9.5E-07 57.3 18.2 89 299-392 559-658 (1081)
315 PF14559 TPR_19: Tetratricopep 97.1 0.0015 3.2E-08 48.7 6.0 50 344-394 4-53 (68)
316 KOG1585 Protein required for f 97.0 0.12 2.5E-06 47.7 18.2 205 298-529 33-250 (308)
317 PF13281 DUF4071: Domain of un 97.0 0.096 2.1E-06 52.9 19.6 180 295-500 140-334 (374)
318 PF13281 DUF4071: Domain of un 97.0 0.19 4E-06 50.9 21.3 125 624-752 195-339 (374)
319 KOG4211 Splicing factor hnRNP- 97.0 0.0013 2.8E-08 65.9 6.1 75 152-231 104-179 (510)
320 PF14559 TPR_19: Tetratricopep 97.0 0.0024 5.3E-08 47.5 6.3 47 264-325 8-54 (68)
321 PRK10803 tol-pal system protei 96.9 0.018 3.8E-07 56.0 13.3 89 342-430 154-246 (263)
322 PRK10803 tol-pal system protei 96.9 0.017 3.7E-07 56.1 13.1 98 368-465 145-246 (263)
323 KOG2280 Vacuolar assembly/sort 96.9 0.84 1.8E-05 49.4 37.5 87 372-460 443-531 (829)
324 PRK15331 chaperone protein Sic 96.9 0.061 1.3E-06 46.9 14.8 85 378-464 49-133 (165)
325 COG4785 NlpI Lipoprotein NlpI, 96.9 0.2 4.4E-06 45.3 18.0 194 237-464 64-265 (297)
326 KOG1538 Uncharacterized conser 96.9 0.086 1.9E-06 55.3 18.0 90 645-745 746-846 (1081)
327 KOG1456 Heterogeneous nuclear 96.9 0.049 1.1E-06 52.7 15.2 78 150-235 286-364 (494)
328 KOG0129 Predicted RNA-binding 96.9 0.0036 7.9E-08 63.3 8.1 67 149-216 257-328 (520)
329 PRK15180 Vi polysaccharide bio 96.8 0.68 1.5E-05 47.1 29.9 102 295-398 322-423 (831)
330 KOG1190 Polypyrimidine tract-b 96.8 0.00054 1.2E-08 66.5 1.9 77 151-234 28-104 (492)
331 PRK15331 chaperone protein Sic 96.8 0.017 3.7E-07 50.2 10.8 91 302-394 43-133 (165)
332 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0059 1.3E-07 48.4 7.2 76 152-231 7-89 (100)
333 KOG1923 Rac1 GTPase effector F 96.8 0.0049 1.1E-07 65.5 8.6 10 265-274 441-450 (830)
334 KOG1996 mRNA splicing factor [ 96.7 0.004 8.7E-08 57.7 6.7 65 166-232 301-365 (378)
335 COG4105 ComL DNA uptake lipopr 96.7 0.53 1.1E-05 44.4 20.7 59 512-570 173-233 (254)
336 KOG0129 Predicted RNA-binding 96.7 0.0035 7.6E-08 63.4 6.7 66 147-213 366-432 (520)
337 KOG4849 mRNA cleavage factor I 96.7 0.046 1E-06 52.2 13.5 10 164-173 358-367 (498)
338 KOG1548 Transcription elongati 96.7 0.0063 1.4E-07 58.1 7.8 83 146-235 260-353 (382)
339 KOG0120 Splicing factor U2AF, 96.7 0.0046 1E-07 63.9 7.5 63 167-231 425-489 (500)
340 PRK11906 transcriptional regul 96.7 0.11 2.5E-06 53.2 17.0 117 264-397 275-403 (458)
341 KOG2253 U1 snRNP complex, subu 96.7 0.0026 5.7E-08 66.3 5.5 66 153-230 42-107 (668)
342 PF10300 DUF3808: Protein of u 96.6 0.067 1.5E-06 57.2 16.1 130 299-430 191-334 (468)
343 COG3898 Uncharacterized membra 96.6 0.85 1.9E-05 45.3 33.0 126 298-430 84-217 (531)
344 COG4105 ComL DNA uptake lipopr 96.6 0.35 7.6E-06 45.5 18.4 59 441-500 172-233 (254)
345 KOG2314 Translation initiation 96.6 0.0035 7.6E-08 63.8 5.7 75 152-230 59-140 (698)
346 KOG2066 Vacuolar assembly/sort 96.6 1.5 3.3E-05 47.7 28.4 102 303-413 363-467 (846)
347 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0056 1.2E-07 42.3 5.0 51 153-211 3-53 (53)
348 PF04184 ST7: ST7 protein; In 96.6 0.17 3.7E-06 52.0 17.2 65 366-430 259-324 (539)
349 PF13371 TPR_9: Tetratricopept 96.6 0.015 3.3E-07 43.9 7.9 55 689-744 3-57 (73)
350 PF12921 ATP13: Mitochondrial 96.5 0.057 1.2E-06 45.6 11.6 102 645-766 1-103 (126)
351 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.1 2.5E-05 45.3 36.1 147 611-762 397-546 (660)
352 KOG1941 Acetylcholine receptor 96.5 0.99 2.1E-05 44.4 21.1 200 297-496 44-271 (518)
353 COG3118 Thioredoxin domain-con 96.5 0.31 6.8E-06 46.7 17.4 144 342-489 145-290 (304)
354 COG0457 NrfG FOG: TPR repeat [ 96.5 0.89 1.9E-05 43.7 30.5 124 620-744 139-264 (291)
355 PRK11906 transcriptional regul 96.5 0.17 3.7E-06 52.0 16.6 146 591-741 273-432 (458)
356 KOG2610 Uncharacterized conser 96.4 0.14 3.1E-06 49.4 14.9 153 587-743 114-274 (491)
357 PF13371 TPR_9: Tetratricopept 96.4 0.02 4.2E-07 43.3 7.9 55 340-395 4-58 (73)
358 PF09205 DUF1955: Domain of un 96.4 0.32 6.9E-06 40.2 14.6 140 587-748 13-152 (161)
359 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.092 2E-06 53.8 14.5 64 330-395 74-141 (453)
360 KOG1920 IkappaB kinase complex 96.4 1.4 3E-05 50.5 24.2 28 472-499 791-820 (1265)
361 PF03704 BTAD: Bacterial trans 96.3 0.18 4E-06 44.3 14.8 57 405-462 66-122 (146)
362 KOG1365 RNA-binding protein Fu 96.3 0.0051 1.1E-07 59.4 4.6 76 152-231 281-359 (508)
363 KOG0543 FKBP-type peptidyl-pro 96.3 0.069 1.5E-06 53.3 12.4 140 302-464 214-354 (397)
364 KOG0543 FKBP-type peptidyl-pro 96.3 0.065 1.4E-06 53.5 12.2 97 332-430 258-355 (397)
365 PF08952 DUF1866: Domain of un 96.2 0.018 4E-07 48.6 7.1 56 167-234 52-107 (146)
366 PF13424 TPR_12: Tetratricopep 96.2 0.0091 2E-07 45.9 5.1 63 682-744 6-74 (78)
367 KOG1585 Protein required for f 96.2 0.54 1.2E-05 43.5 16.6 24 439-462 94-117 (308)
368 PF03704 BTAD: Bacterial trans 96.2 0.034 7.3E-07 49.1 9.2 71 683-754 64-139 (146)
369 KOG1456 Heterogeneous nuclear 96.2 0.016 3.5E-07 55.9 7.2 78 152-237 121-202 (494)
370 PF13424 TPR_12: Tetratricopep 96.1 0.01 2.2E-07 45.6 4.9 26 368-393 7-32 (78)
371 KOG0115 RNA-binding protein p5 96.1 0.0059 1.3E-07 55.8 3.9 77 152-230 32-110 (275)
372 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.18 3.9E-06 51.7 14.7 65 294-360 73-141 (453)
373 KOG2193 IGF-II mRNA-binding pr 96.1 0.006 1.3E-07 59.7 4.0 74 153-237 3-79 (584)
374 PF04053 Coatomer_WDAD: Coatom 96.1 0.12 2.6E-06 54.4 14.0 157 304-496 269-427 (443)
375 KOG1941 Acetylcholine receptor 96.0 1.7 3.7E-05 42.8 21.1 226 308-534 18-274 (518)
376 KOG2610 Uncharacterized conser 96.0 1.3 2.8E-05 43.1 18.9 155 340-496 112-272 (491)
377 KOG2202 U2 snRNP splicing fact 95.9 0.004 8.7E-08 57.1 2.0 62 166-231 83-145 (260)
378 COG1747 Uncharacterized N-term 95.9 2.5 5.4E-05 43.8 25.2 178 364-549 64-247 (711)
379 COG3118 Thioredoxin domain-con 95.9 1.1 2.3E-05 43.3 17.6 55 374-429 142-196 (304)
380 PF10345 Cohesin_load: Cohesin 95.9 4.1 8.8E-05 45.8 39.8 49 552-600 372-428 (608)
381 COG1729 Uncharacterized protei 95.9 0.16 3.4E-06 48.3 12.1 61 369-429 181-243 (262)
382 KOG1855 Predicted RNA-binding 95.7 0.0085 1.8E-07 59.0 3.4 65 150-214 230-306 (484)
383 COG0457 NrfG FOG: TPR repeat [ 95.7 2.1 4.5E-05 41.0 33.1 203 506-711 59-266 (291)
384 KOG0105 Alternative splicing f 95.7 0.034 7.5E-07 48.0 6.4 72 149-230 113-186 (241)
385 COG4649 Uncharacterized protei 95.7 0.38 8.2E-06 41.9 12.5 92 303-394 101-195 (221)
386 KOG1550 Extracellular protein 95.7 4.4 9.6E-05 44.7 27.3 176 312-501 228-427 (552)
387 KOG2396 HAT (Half-A-TPR) repea 95.7 3.2 6.9E-05 43.0 38.8 87 316-405 91-178 (568)
388 PF04184 ST7: ST7 protein; In 95.6 1 2.2E-05 46.6 17.3 74 650-723 263-338 (539)
389 PF08631 SPO22: Meiosis protei 95.6 2.8 6E-05 41.6 27.3 62 403-465 86-150 (278)
390 PF10300 DUF3808: Protein of u 95.6 0.75 1.6E-05 49.4 17.6 176 352-534 178-375 (468)
391 PF13170 DUF4003: Protein of u 95.5 2.5 5.3E-05 42.0 19.8 47 559-605 80-132 (297)
392 PF04053 Coatomer_WDAD: Coatom 95.5 0.17 3.7E-06 53.3 12.2 133 296-461 295-427 (443)
393 KOG0890 Protein kinase of the 95.5 9.2 0.0002 47.8 27.0 150 336-495 1388-1542(2382)
394 KOG1920 IkappaB kinase complex 95.4 6.8 0.00015 45.3 26.3 109 510-638 912-1026(1265)
395 smart00299 CLH Clathrin heavy 95.4 1.1 2.5E-05 38.9 15.6 125 616-763 12-137 (140)
396 smart00299 CLH Clathrin heavy 95.4 0.84 1.8E-05 39.8 14.7 41 302-343 13-53 (140)
397 KOG2066 Vacuolar assembly/sort 95.4 5.4 0.00012 43.8 28.5 102 338-448 363-467 (846)
398 PF12921 ATP13: Mitochondrial 95.4 0.25 5.5E-06 41.7 10.6 99 610-728 1-100 (126)
399 PF10345 Cohesin_load: Cohesin 95.3 6.5 0.00014 44.2 41.1 190 587-777 372-603 (608)
400 PF13431 TPR_17: Tetratricopep 95.3 0.027 5.9E-07 34.7 3.4 33 270-317 2-34 (34)
401 PF13512 TPR_18: Tetratricopep 95.3 0.47 1E-05 40.5 11.8 84 295-378 9-94 (142)
402 KOG4555 TPR repeat-containing 95.2 0.37 7.9E-06 39.7 10.2 55 340-395 52-106 (175)
403 KOG1365 RNA-binding protein Fu 95.1 0.023 5E-07 55.0 4.0 70 153-227 163-236 (508)
404 KOG1550 Extracellular protein 95.1 6.7 0.00015 43.3 27.1 177 347-537 228-428 (552)
405 COG1729 Uncharacterized protei 95.1 0.32 6.8E-06 46.3 11.3 97 368-465 144-244 (262)
406 PF09205 DUF1955: Domain of un 95.0 1.7 3.8E-05 36.1 14.4 57 409-466 94-150 (161)
407 PF08631 SPO22: Meiosis protei 95.0 4.2 9E-05 40.4 25.4 156 307-465 4-186 (278)
408 COG4649 Uncharacterized protei 95.0 1.4 2.9E-05 38.7 13.6 122 343-464 70-195 (221)
409 KOG3941 Intermediate in Toll s 94.9 0.46 1E-05 44.9 11.5 100 470-569 66-187 (406)
410 KOG2062 26S proteasome regulat 94.9 7.4 0.00016 42.5 27.8 170 303-482 66-254 (929)
411 KOG0128 RNA-binding protein SA 94.8 8.3 0.00018 42.8 33.9 88 627-715 442-531 (881)
412 KOG4555 TPR repeat-containing 94.8 0.55 1.2E-05 38.8 10.3 93 303-396 50-145 (175)
413 KOG0112 Large RNA-binding prot 94.7 0.035 7.5E-07 60.4 4.5 79 148-235 452-532 (975)
414 KOG2068 MOT2 transcription fac 94.7 0.013 2.8E-07 56.4 1.2 82 152-235 78-164 (327)
415 PF13428 TPR_14: Tetratricopep 94.7 0.094 2E-06 34.7 5.0 28 369-396 4-31 (44)
416 PRK15319 AIDA autotransporter- 94.6 0.051 1.1E-06 64.3 5.8 13 217-230 1858-1870(2039)
417 PF13170 DUF4003: Protein of u 94.5 5.8 0.00012 39.5 22.5 130 522-653 78-224 (297)
418 KOG0890 Protein kinase of the 94.4 19 0.00042 45.2 28.5 312 371-711 1388-1732(2382)
419 KOG2416 Acinus (induces apopto 94.4 0.077 1.7E-06 54.9 5.8 78 148-234 441-522 (718)
420 PRK14950 DNA polymerase III su 94.3 0.26 5.7E-06 54.5 10.3 8 223-230 534-541 (585)
421 PF13428 TPR_14: Tetratricopep 94.2 0.12 2.7E-06 34.1 4.7 39 298-337 3-41 (44)
422 PRK14950 DNA polymerase III su 94.1 0.3 6.4E-06 54.1 10.2 8 222-229 499-506 (585)
423 PF13512 TPR_18: Tetratricopep 94.1 1.8 3.9E-05 37.0 12.5 54 343-396 22-77 (142)
424 KOG4570 Uncharacterized conser 94.0 0.81 1.8E-05 44.0 11.1 135 257-396 27-165 (418)
425 PF08675 RNA_bind: RNA binding 93.7 0.31 6.7E-06 36.6 6.3 53 153-214 10-62 (87)
426 COG1747 Uncharacterized N-term 93.7 10 0.00022 39.6 25.4 180 540-727 65-250 (711)
427 KOG0112 Large RNA-binding prot 93.7 0.035 7.7E-07 60.3 2.1 84 145-232 366-449 (975)
428 KOG3941 Intermediate in Toll s 93.7 0.52 1.1E-05 44.5 9.2 116 609-743 65-186 (406)
429 PF04847 Calcipressin: Calcipr 93.6 0.2 4.3E-06 45.3 6.3 61 165-234 9-71 (184)
430 KOG2063 Vacuolar assembly/sort 93.5 9 0.0002 43.7 19.9 39 620-658 600-638 (877)
431 KOG0403 Neoplastic transformat 93.3 11 0.00023 38.6 19.2 56 651-707 514-569 (645)
432 COG4785 NlpI Lipoprotein NlpI, 93.1 6.9 0.00015 35.9 17.0 158 366-535 99-266 (297)
433 PF10602 RPN7: 26S proteasome 93.1 1 2.2E-05 41.0 10.2 64 296-359 36-101 (177)
434 KOG4285 Mitotic phosphoprotein 93.0 8.7 0.00019 36.8 17.8 63 153-226 199-261 (350)
435 COG3629 DnrI DNA-binding trans 93.0 1.1 2.5E-05 43.3 10.7 77 683-760 155-236 (280)
436 COG3947 Response regulator con 92.9 8.9 0.00019 36.9 16.0 72 683-755 281-357 (361)
437 KOG2591 c-Mpl binding protein, 92.7 0.17 3.6E-06 52.0 4.9 75 149-231 173-249 (684)
438 PF03880 DbpA: DbpA RNA bindin 92.6 0.59 1.3E-05 35.1 6.7 59 161-231 11-74 (74)
439 KOG0307 Vesicle coat complex C 92.6 3 6.6E-05 47.4 14.6 22 302-323 1003-1024(1049)
440 PF07035 Mic1: Colon cancer-as 92.5 7.3 0.00016 34.6 15.1 137 351-503 14-152 (167)
441 KOG4574 RNA-binding protein (c 92.3 0.48 1E-05 51.5 7.9 73 153-234 300-374 (1007)
442 PRK15313 autotransport protein 92.3 0.41 8.9E-06 53.6 7.6 6 218-223 771-776 (955)
443 PF13431 TPR_17: Tetratricopep 92.2 0.19 4.1E-06 30.9 2.9 31 705-736 3-33 (34)
444 KOG4234 TPR repeat-containing 92.2 3.1 6.6E-05 37.5 11.3 91 303-396 102-198 (271)
445 KOG0307 Vesicle coat complex C 92.1 3.9 8.5E-05 46.6 14.8 42 317-358 983-1024(1049)
446 PF10602 RPN7: 26S proteasome 91.9 1.7 3.6E-05 39.5 10.1 63 332-394 37-101 (177)
447 PF13176 TPR_7: Tetratricopept 91.9 0.34 7.4E-06 30.3 4.0 24 369-392 2-25 (36)
448 COG3947 Response regulator con 91.8 13 0.00028 35.9 16.3 203 295-509 121-356 (361)
449 COG0790 FOG: TPR repeat, SEL1 91.7 16 0.00034 36.6 24.6 150 308-466 53-221 (292)
450 COG2976 Uncharacterized protei 91.6 7.2 0.00016 35.2 13.0 143 630-776 38-184 (207)
451 KOG1985 Vesicle coat complex C 91.6 3.3 7.1E-05 45.6 13.0 7 198-204 231-237 (887)
452 KOG4648 Uncharacterized conser 91.6 1.4 3E-05 43.0 9.3 89 374-464 105-193 (536)
453 PF13176 TPR_7: Tetratricopept 91.5 0.47 1E-05 29.6 4.3 26 718-743 1-26 (36)
454 KOG4648 Uncharacterized conser 91.3 1.2 2.5E-05 43.5 8.5 97 239-360 97-194 (536)
455 PF02259 FAT: FAT domain; Int 91.3 20 0.00043 37.1 23.8 256 476-763 3-304 (352)
456 KOG4234 TPR repeat-containing 91.3 2.4 5.3E-05 38.1 9.8 94 248-361 105-198 (271)
457 PF06552 TOM20_plant: Plant sp 91.3 1.7 3.8E-05 38.6 8.9 80 260-362 48-138 (186)
458 PF07576 BRAP2: BRCA1-associat 91.2 1.4 3.1E-05 35.9 7.8 66 153-223 15-81 (110)
459 PRK15180 Vi polysaccharide bio 91.1 21 0.00046 36.9 29.2 128 300-431 293-421 (831)
460 KOG0276 Vesicle coat complex C 91.0 2.1 4.5E-05 45.2 10.5 150 413-602 598-747 (794)
461 PF15023 DUF4523: Protein of u 90.8 0.7 1.5E-05 38.5 5.6 68 153-231 88-159 (166)
462 COG3629 DnrI DNA-binding trans 90.8 3.1 6.7E-05 40.4 11.0 78 612-690 154-236 (280)
463 KOG0276 Vesicle coat complex C 90.8 3.5 7.5E-05 43.7 11.8 150 308-497 598-747 (794)
464 PF15449 Retinal: Retinal prot 90.7 8.6 0.00019 43.8 15.3 10 148-157 1139-1148(1287)
465 PRK09687 putative lyase; Provi 90.6 19 0.00041 35.7 28.8 138 610-763 141-279 (280)
466 PRK09687 putative lyase; Provi 90.4 20 0.00043 35.5 29.1 82 293-380 34-119 (280)
467 PF07575 Nucleopor_Nup85: Nup8 90.3 13 0.00027 41.4 17.0 26 296-322 149-174 (566)
468 PF04910 Tcf25: Transcriptiona 90.3 24 0.00052 36.4 20.4 158 259-429 6-167 (360)
469 KOG0162 Myosin class I heavy c 90.3 2.5 5.5E-05 45.5 10.6 108 12-119 942-1052(1106)
470 PF08424 NRDE-2: NRDE-2, neces 90.3 22 0.00047 36.1 17.4 81 312-394 47-130 (321)
471 KOG2471 TPR repeat-containing 90.3 5.9 0.00013 40.9 12.7 107 586-694 250-382 (696)
472 PF09613 HrpB1_HrpK: Bacterial 90.2 12 0.00027 32.8 13.6 121 366-492 10-130 (160)
473 KOG1586 Protein required for f 90.1 16 0.00035 34.1 24.2 17 519-535 167-183 (288)
474 PF10309 DUF2414: Protein of u 90.0 1.7 3.6E-05 31.0 6.2 54 152-214 6-62 (62)
475 KOG2471 TPR repeat-containing 89.9 6.1 0.00013 40.8 12.4 45 718-764 338-382 (696)
476 KOG2135 Proteins containing th 89.8 0.52 1.1E-05 47.7 5.0 78 152-239 373-451 (526)
477 PF08424 NRDE-2: NRDE-2, neces 89.6 26 0.00055 35.6 17.5 60 384-445 49-108 (321)
478 PF00515 TPR_1: Tetratricopept 89.5 0.94 2E-05 27.6 4.4 28 717-744 2-29 (34)
479 PF06552 TOM20_plant: Plant sp 89.4 3.8 8.3E-05 36.5 9.4 99 662-764 7-126 (186)
480 KOG0162 Myosin class I heavy c 89.2 7.4 0.00016 42.2 12.9 127 2-128 921-1052(1106)
481 KOG4676 Splicing factor, argin 89.0 0.81 1.8E-05 45.0 5.5 81 151-233 7-89 (479)
482 PF09613 HrpB1_HrpK: Bacterial 88.8 16 0.00034 32.1 13.7 118 649-772 13-130 (160)
483 KOG1586 Protein required for f 88.7 21 0.00045 33.4 21.5 234 331-588 34-277 (288)
484 KOG0559 Dihydrolipoamide succi 88.7 1.9 4.1E-05 42.2 7.6 71 14-85 148-218 (457)
485 KOG1985 Vesicle coat complex C 88.6 7 0.00015 43.2 12.5 124 10-133 20-143 (887)
486 COG2976 Uncharacterized protei 88.6 19 0.00041 32.7 14.3 143 611-757 54-200 (207)
487 PF07719 TPR_2: Tetratricopept 88.5 1.2 2.6E-05 27.0 4.4 33 716-750 1-33 (34)
488 COG5159 RPN6 26S proteasome re 88.4 24 0.00053 33.9 17.9 295 407-730 9-333 (421)
489 PF00515 TPR_1: Tetratricopept 88.4 1.2 2.7E-05 27.1 4.4 33 366-398 1-33 (34)
490 KOG2300 Uncharacterized conser 88.1 36 0.00079 35.5 34.9 433 302-741 13-552 (629)
491 KOG4570 Uncharacterized conser 88.0 6.3 0.00014 38.3 10.5 142 511-656 24-180 (418)
492 PF07035 Mic1: Colon cancer-as 87.8 20 0.00042 32.0 16.0 136 456-606 14-150 (167)
493 KOG0687 26S proteasome regulat 87.8 30 0.00065 34.1 14.8 181 345-549 36-224 (393)
494 KOG0226 RNA-binding proteins [ 87.6 2.1 4.6E-05 39.7 6.9 162 64-233 13-177 (290)
495 PF07719 TPR_2: Tetratricopept 87.3 1.5 3.3E-05 26.6 4.3 33 296-330 1-33 (34)
496 KOG0391 SNF2 family DNA-depend 87.0 4.4 9.6E-05 46.6 10.2 117 4-120 1835-1957(1958)
497 PF07174 FAP: Fibronectin-atta 86.8 4.8 0.0001 37.9 8.7 74 14-87 34-107 (297)
498 KOG2034 Vacuolar sorting prote 86.6 63 0.0014 36.6 26.1 310 374-717 366-703 (911)
499 PF04097 Nic96: Nup93/Nic96; 86.6 61 0.0013 36.4 25.0 361 336-742 116-531 (613)
500 PF03467 Smg4_UPF3: Smg-4/UPF3 86.4 1.3 2.8E-05 40.0 5.0 70 150-221 6-80 (176)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7e-67 Score=587.74 Aligned_cols=503 Identities=19% Similarity=0.317 Sum_probs=469.9
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
+.++|+. ++|.++|+++...+...|+ ...++.++..|.+.|.+++|+.+|+.|..
T Consensus 380 l~r~G~l---------~eAl~Lfd~M~~~gvv~~~-------------~v~~~~li~~~~~~g~~~eAl~lf~~M~~--- 434 (1060)
T PLN03218 380 LLRDGRI---------KDCIDLLEDMEKRGLLDMD-------------KIYHAKFFKACKKQRAVKEAFRFAKLIRN--- 434 (1060)
T ss_pred HHHCcCH---------HHHHHHHHHHHhCCCCCch-------------HHHHHHHHHHHHHCCCHHHHHHHHHHcCC---
Confidence 5566777 8999999999888766564 44577889999999999999999999864
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|..+|..+|+.+
T Consensus 435 -pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 -PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred -CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHHcC
Q 004006 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE--CGFSPSIISYGCLINLYTKIG 485 (779)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g 485 (779)
|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 578999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004006 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (779)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (779)
++++|.++|+.|.+.|+.++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (779)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 645 (779)
+|.+.|..|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cC-------------------ChHHHHH
Q 004006 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK----SG-------------------RMQSALA 702 (779)
Q Consensus 646 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~ 702 (779)
..||+.++.+|++.|++++|.++|.+|.+.|+.||..+|++|+..|.+ ++ ..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999876542 21 2367999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhhc
Q 004006 703 VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEAK 778 (779)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~ 778 (779)
+|++|.+.|+.||..+|+.++.++++.+....+..+++.|...+..++..+|++||++|.+. .++|..+|++|.
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 99999999999999999999988888999999999999998888899999999999998432 368999999985
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-65 Score=574.30 Aligned_cols=481 Identities=17% Similarity=0.265 Sum_probs=461.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
++...|..+++.|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4667888999999999999999999999999986 45777888999999999999999999999974 799999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
+.+|++.|++++|.++|++|.+.|..+|..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS--SGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (779)
++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|+.||.+|++.|++++|+++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 610 (779)
.|.+.|+.++..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCC
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR----R-------------------GDVWEAADLMQQMKQEGV 747 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g~ 747 (779)
|++.|++++|.+++++|.+.|+.||..+|++|+..|.+ . +..++|..+|++|++.|+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999876432 1 234689999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHhHhhhc
Q 004006 748 QPDVHTYTSFINACKCSKSNQRNGRSWSEAK 778 (779)
Q Consensus 748 ~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~ 778 (779)
.||..||+.++.++.+.+..+.+.+++++|.
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 9999999999988888899999999998874
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-64 Score=581.01 Aligned_cols=510 Identities=20% Similarity=0.297 Sum_probs=299.3
Q ss_pred HHhhhc--ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhh-----------------CCCCHHHHHHH
Q 004006 242 VRARWV--AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERI-----------------KKPSRREFGLM 302 (779)
Q Consensus 242 ~~~~~~--~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l 302 (779)
..+.+| |.++|+. +.|.++|+++.+.|...|+.++.+|.+. -.||..+|+.+
T Consensus 123 ~~n~li~~~~~~g~~---------~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 123 LGNAMLSMFVRFGEL---------VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred HHHHHHHHHHhCCCh---------HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 345566 8999998 8999999999888888888887776432 24666666655
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
+++|+..+++..+.+++..|.+.|+.+|..+||.||.+|++.|++++|.++|++|.+ +|..+|++++.+|++.|++
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCH
Confidence 555555555555555555555555555555555555555555555555555555532 3445555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
++|+++|++|.+.|..||..+|+.++.+|++.|+.+.|.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004006 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (779)
Q Consensus 463 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (779)
.. +|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.++..
T Consensus 350 ~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 350 ET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred CC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 32 34445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------------------------------CCCCCcccHHHHHHHHHhcCCH
Q 004006 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKE------------------------------RHRPTSRTFMPIIHGFARAGEM 592 (779)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~~~~ 592 (779)
+|+.|+.+|++.|++++|.++|++|.+. +..||..+|+.++.+|++.|++
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 5555555555555555555555444321 2444444444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKL 672 (779)
Q Consensus 593 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 672 (779)
+.+.+++..+.+.|+.++..++|+||.+|+++|++++|.++|+.+ .+|..+|+.||.+|++.|+.++|+++|++|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444455555555555666666666666666554 356667777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004006 673 RNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS-AQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV 751 (779)
Q Consensus 673 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 751 (779)
.+.|+.||..||+.++.+|++.|++++|+++|+.|. +.++.|+..+|++|+++|++.|++++|.+++++|. ++||.
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 777777777777777777777777777777777776 45667777777777777777777777777777662 56777
Q ss_pred HHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 752 HTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 752 ~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
.+|++|+.+|..+|+.+.|....++
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7777777777777777666555543
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-64 Score=581.08 Aligned_cols=505 Identities=16% Similarity=0.272 Sum_probs=429.8
Q ss_pred hhhhhHHHHHHHHHHhcCCc----cHHHHHH-------------HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 260 HKEREWHRREFRKAVETQPE----NWQAVVS-------------AFERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322 (779)
Q Consensus 260 ~~~~~~a~~~f~~~~~~~~~----~~~~~~~-------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (779)
.+..+.+..++..++...+. .++.+++ .|+++..++..+|+.+|.+|++.|++++|+++|++|
T Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M 178 (857)
T PLN03077 99 KRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34447788888877765432 2344444 455667889999999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 004006 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI 402 (779)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (779)
...|+.||..+|+.+|++|.+.++++.+.+++..|.+.|+.+|..+++.|+.+|++.|++++|.++|++|.+ +|..
T Consensus 179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~ 254 (857)
T PLN03077 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCI 254 (857)
T ss_pred HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 4889
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (779)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 482 (779)
+|+.+|.+|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|+.+.+.+++..|.+.|+.||..+|+.|+.+|+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004006 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (779)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 562 (779)
+.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 335 k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 99999999999999964 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI 642 (779)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 642 (779)
+++.|.+.|..++..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 999999999999999999999999999999999999999875 5788999999999999999999999999986 58
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH------------------------------HHHHHHHHH
Q 004006 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT------------------------------YEALLKACC 692 (779)
Q Consensus 643 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------------------------------~~~l~~~~~ 692 (779)
.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..+ |+.+|.+|+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYV 565 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 99999999999888888888888888888877776555555 555555555
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCcchHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK-QEGVQPDVHTYTSFINACKCSKSNQRNG 771 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~l~~a~~~~g~~~~a~ 771 (779)
+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|.+.|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 555555555555555555555555555555555555555555555555555 3455555555555555555555555555
Q ss_pred HhHhhh
Q 004006 772 RSWSEA 777 (779)
Q Consensus 772 ~~~~~m 777 (779)
+++++|
T Consensus 646 ~~~~~m 651 (857)
T PLN03077 646 NFINKM 651 (857)
T ss_pred HHHHHC
Confidence 555554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7e-61 Score=539.28 Aligned_cols=467 Identities=18% Similarity=0.266 Sum_probs=446.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARG-IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+...|+.+|..|.+.|++++|+++|++|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.|+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34457888999999999999999999998864 67899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|++++|+++|++|.+.|..++..+|+.++.++...|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999964 5999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
.+.+++..+.+.|+.+|..+|+.|+++|++.|++++|.++|+.|.. +|..+|+.||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999964 589999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004006 534 RDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHT 613 (779)
Q Consensus 534 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 613 (779)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..+|..+++.|+.+|++.|++++|.++|++|.+ +|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 004006 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN-EGLELDVFTYEALLKACC 692 (779)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 692 (779)
||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 699999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCcchHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSFINACKCSKSNQRNG 771 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~a~~~~g~~~~a~ 771 (779)
+.|++++|.+++++| .+.|+..+|++|+.+|...|+++.|.++++++.+ +.|+ ..+|..|++.|.+.|++++|.
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999999999876 4579999999999999999999999999999975 5564 679999999999999999999
Q ss_pred HhHhhhc
Q 004006 772 RSWSEAK 778 (779)
Q Consensus 772 ~~~~~m~ 778 (779)
+++++|+
T Consensus 549 ~v~~~m~ 555 (697)
T PLN03081 549 KVVETLK 555 (697)
T ss_pred HHHHHHH
Confidence 9999996
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.9e-59 Score=521.87 Aligned_cols=463 Identities=19% Similarity=0.282 Sum_probs=439.2
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
|.++|+. +.|.++|..+....+. .|+..+|+.++.+|++.|+++.|.+++..|.+.|+
T Consensus 97 l~~~g~~---------~~Al~~f~~m~~~~~~-------------~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~ 154 (697)
T PLN03081 97 LVACGRH---------REALELFEILEAGCPF-------------TLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154 (697)
T ss_pred HHcCCCH---------HHHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4566777 8999999988654321 26889999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
.||..+||.++.+|++.|++++|.++|++|.+ +|.++|++++.+|++.|++++|+++|++|.+.+..++..+|..+
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 99999999999999999999999999999964 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 004006 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (779)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 487 (779)
+.+|++.|+.+.+.+++..+.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.||.+|++.|+.
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999964 5899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004006 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (779)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (779)
++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH
Q 004006 568 QKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL-AGISPNE 646 (779)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~~~~ 646 (779)
.+ +|..+|+.||.+|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 64 588999999999999999999999999999999999999999999999999999999999999986 6899999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
.+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+.+ +.+..+|..|+++|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y 538 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLY 538 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHH
Confidence 99999999999999999999998765 678999999999999999999999999999997654 44678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC
Q 004006 727 ARRGDVWEAADLMQQMKQEGVQ 748 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~ 748 (779)
++.|++++|.+++++|.+.|+.
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999975
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.9e-32 Score=321.71 Aligned_cols=510 Identities=14% Similarity=0.094 Sum_probs=439.2
Q ss_pred hcccCCccccccchhhhhhHHHHHHHHHHhcCCcc---HHHHH-------------HHHHhh---CCCCHHHHHHHHHHH
Q 004006 246 WVAGNNGEEFRSTWHKEREWHRREFRKAVETQPEN---WQAVV-------------SAFERI---KKPSRREFGLMVNYY 306 (779)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~---~~~~~-------------~~~~~~---~~~~~~~~~~li~~~ 306 (779)
.+|.+.|+. +.|.+.|.+++..+|.+ |..+. ..|... .......+..++..|
T Consensus 371 ~~~~~~g~~---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 371 EAYLALGDF---------EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred HHHHHCCCH---------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 347888888 99999999999887753 22221 222221 112344566678899
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
.+.|++++|+.+++.+.... ..+..+|+.+..+|...|++++|.+.|+++++.. +.+...+..++..+...|++++|+
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998764 4467889999999999999999999999998864 336778888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
+.|+++....+. +..++..++.++.+.|+.++|..+++++.+.+ +.+...+..++..|...|++++|+.+++++.+..
T Consensus 520 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 520 QRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999987654 78899999999999999999999999998875 5567788889999999999999999999998754
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 467 FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN 546 (779)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 546 (779)
..+..+|..++.+|.+.|++++|+..|+++.+.. +.+...+..+..+|...|++++|..+|+++.+.... +...+..
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 674 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIG 674 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 3477889999999999999999999999998764 346778889999999999999999999999886543 6788999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 547 IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626 (779)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 626 (779)
++..+...|++++|.++++.+...... +...+..+...+.+.|++++|...|+.+...+. +..++..++.++.+.|+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCC
Confidence 999999999999999999999988654 677788888999999999999999999998654 44677788999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004006 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKE 706 (779)
Q Consensus 627 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (779)
+++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+..+++.++..+...|+ .+|+.++++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 999999999998865 5678889999999999999999999999999886 5688899999999999999 889999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhhcC
Q 004006 707 MSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEAKC 779 (779)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~~ 779 (779)
+.+.. +.+..++..++.++...|++++|.++++++++.+.. |..++..++.++.+.|+.++|.++|++|.+
T Consensus 829 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 829 ALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 98864 567778899999999999999999999999997644 889999999999999999999999999854
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.4e-31 Score=313.51 Aligned_cols=507 Identities=14% Similarity=0.092 Sum_probs=416.1
Q ss_pred cccCCccccccchhhhhhHHHHHHHHHHhcCCcc---HHHHH-------------HHHHhh---CCCCHHHHHHHHHHHH
Q 004006 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPEN---WQAVV-------------SAFERI---KKPSRREFGLMVNYYA 307 (779)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~---~~~~~-------------~~~~~~---~~~~~~~~~~li~~~~ 307 (779)
+|.+.|+. +.|...|.+++..++.+ |..+. ..|++. ...+...+..+...+.
T Consensus 338 ~~~~~g~~---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 338 IQLRLGRV---------DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408 (899)
T ss_pred HHHHCCCH---------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 37888888 99999999998887753 22222 222222 2235566777788888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
..|++++|+..|+.+.+.... .......++..+.+.|++++|+.+++.+.... +.+..+|..++..|...|++++|+.
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888888888776432 34556667778888888888888888887753 4477888899999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
.|+++.+.... +...+..++..+...|++++|.++|+++.+.+ +.+..++..+...+...|+.++|..+|+++.+.+.
T Consensus 487 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 564 (899)
T TIGR02917 487 AFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564 (899)
T ss_pred HHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99998876544 66778888889999999999999999998865 55677888888999999999999999999887643
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (779)
.+...+..++..|.+.|++++|..+++.+.+.. ..+...|..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 565 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 641 (899)
T TIGR02917 565 -QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLL 641 (899)
T ss_pred -cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 356777888899999999999999999988754 446788899999999999999999999998876443 66778888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (779)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 627 (779)
..++.+.|++++|..+|+++...... +..++..++..+...|++++|..+++.+.+.... +...+..+...+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCH
Confidence 89999999999999999998887554 5678888889999999999999999999887543 677888888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 628 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
++|+..|+++...+ |+..++..++.++.+.|++++|.+.++++++.. +.+...+..++..|...|++++|..+|+++
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999998764 555777888899999999999999999998875 567888999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
.+.. +.+...++.+++++...|+ .+|+.+++++.+.. .-+..++..+..++...|++++|.++|+++
T Consensus 797 ~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 797 VKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8876 6788889999999999999 88999999998752 335667788999999999999999999876
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.4e-24 Score=252.88 Aligned_cols=513 Identities=11% Similarity=0.069 Sum_probs=348.2
Q ss_pred cccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHH-HHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004006 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVV-SAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR 325 (779)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (779)
++.+.|+. +.|.+.++++.+.+|.+..... ...-....++......+...+...|++++|++.|+.+.+.
T Consensus 71 ~~l~~g~~---------~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 71 LLLRQGDS---------DGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHhCCCH---------HHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC
Confidence 36777887 9999999999999997643211 1111223344445556667788888888888888888765
Q ss_pred CCCCCHh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC------
Q 004006 326 GIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT------ 398 (779)
Q Consensus 326 ~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 398 (779)
+. ++.. ....+.......|+.++|++.++++++.. +-+...+..+...+...|++++|+..|+++......
T Consensus 142 ~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~ 219 (1157)
T PRK11447 142 AP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQ 219 (1157)
T ss_pred CC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHH
Confidence 32 2221 11112222234578888888888888764 336677778888888888888888888877543210
Q ss_pred --------------------------CChh---------------------hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 399 --------------------------LNAI---------------------IYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 399 --------------------------~~~~---------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
++.. ....+..++...|++++|+..|++..+.+
T Consensus 220 ~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~ 299 (1157)
T PRK11447 220 LWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN 299 (1157)
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 0000 00012445667788888888888888764
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhH------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 004006 432 IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISY------------GCLINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~ 498 (779)
+.+..++..+...|.+.|++++|+..|++..+..... ....| ..+...+.+.|++++|+..|+++.
T Consensus 300 -P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 300 -PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4467778888888888888888888888887653221 11111 122445677888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--------------------------------
Q 004006 499 SSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN-------------------------------- 546 (779)
Q Consensus 499 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-------------------------------- 546 (779)
+.. +.+...+..+..+|...|++++|++.|+++.+.... +...+..
T Consensus 379 ~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 379 QVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 764 235666777778888888888888888887765332 2222222
Q ss_pred ----------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 547 ----------IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNA 616 (779)
Q Consensus 547 ----------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 616 (779)
+...+...|++++|++.|++.....+. +...+..+...|.+.|++++|+..++++.+.... +...+..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a 534 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYA 534 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 233445678888888888888877654 5556677778888888888888888888765433 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---------------------------------------CCCCCHHHHHHHHHHHH
Q 004006 617 LILGLVEKRQMEKAIEILDEMTLA---------------------------------------GISPNEHTYTTIMHGYA 657 (779)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~---------------------------------------~~~~~~~~~~~li~~~~ 657 (779)
+...+...++.++|+..++.+... ..+.+...+..+...+.
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 333334444445444444332100 01334456667788888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 658 SLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAAD 737 (779)
Q Consensus 658 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 737 (779)
+.|++++|+..|+++++.. +.+...+..++.+|...|++++|+++++++.... +.+...+..+..++...|++++|.+
T Consensus 615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999875 4578888999999999999999999999887653 4556677888889999999999999
Q ss_pred HHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 738 LMQQMKQEGVQ--P---DVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 738 ~~~~m~~~g~~--p---d~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
++++++...-. + +...+..+...+...|+.++|..+|+..
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998864221 1 2356777788899999999999998753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=5.9e-24 Score=251.75 Aligned_cols=488 Identities=11% Similarity=0.036 Sum_probs=361.9
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH---------
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY--------- 334 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------- 334 (779)
+.|++.+.+++..+|+ ++..+..++..+.+.|+.++|.+.++++.+.... +...+
T Consensus 45 d~a~~~l~kl~~~~p~---------------~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 45 DLVRQSLYRLELIDPN---------------NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 8899999999999997 7777888999999999999999999999987532 22221
Q ss_pred -------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 335 -------TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (779)
Q Consensus 335 -------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (779)
..+...+...|++++|++.|+++.+.+. ++.. ....+.......|+.++|++.|+++.+..+. +...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 2334568889999999999999987643 3322 1112222233569999999999999998655 7788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--------------------------------CChhh-------H--------
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGID--------------------------------APIDI-------Y-------- 439 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------------~~~~~-------~-------- 439 (779)
+..++...|+.++|++.|+++.+.... ++... +
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988653210 00000 0
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH---
Q 004006 440 ------HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH-NMKTY--- 509 (779)
Q Consensus 440 ------~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~--- 509 (779)
......+...|++++|+..|++.++.... +...+..+..+|.+.|++++|+..|++..+..-.. +...|
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 01234567789999999999999886432 67889999999999999999999999998754221 11112
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHH
Q 004006 510 ---------SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFM 580 (779)
Q Consensus 510 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 580 (779)
..+...+.+.|++++|+..|+++++.... +...+..+..++...|++++|++.|+++.+.... +...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 12245677899999999999999987543 6677888999999999999999999999876543 222222
Q ss_pred H------------------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 581 P------------------------------------------IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (779)
Q Consensus 581 ~------------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 618 (779)
. +...+...|++++|+..|+++.+..+. +...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 2 223345678899999999998887554 567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----------------------- 675 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------------- 675 (779)
..|.+.|++++|+..++++++.. +.+...+..+...+...++.++|+..++++...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88999999999999999987653 223333333333334444444444444332110
Q ss_pred ----------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 676 ----------------GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (779)
Q Consensus 676 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (779)
..+.+...+..+...+.+.|++++|+..++++.+.. +.+...+..++.+|...|++++|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 123455566778888899999999999999998875 667888899999999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 740 QQMKQEGVQP-DVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 740 ~~m~~~g~~p-d~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+.+.+. .| +..++..+..++...|+.++|.++++++
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 988763 34 4556777888888999999999998875
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-24 Score=214.13 Aligned_cols=482 Identities=12% Similarity=0.107 Sum_probs=388.5
Q ss_pred HHHHHHHhcCCc--cHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 004006 268 REFRKAVETQPE--NWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR 345 (779)
Q Consensus 268 ~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (779)
+.|...+..++. .-+.+++.|..-..-+. ....|..-..+.|++.+|++.....-.++.. +....-.+-..+.+..
T Consensus 19 ~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~-~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~ 96 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSGSSSVLQQFNKTHEGSD-DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGS 96 (966)
T ss_pred HHHHHHhccCcccccchHHHHHhccCCccch-hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhccc
Confidence 445555555443 23455555554433222 2556777888999999999998887766422 3344444446677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 004006 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVR 425 (779)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (779)
+++....--...++.. +--.++|..+.+.+...|++++|+..++.+++..+. .+..|..+..++...|+.+.|.++|.
T Consensus 97 r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 97 RLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred chhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 7777666555555543 336889999999999999999999999999998665 88899999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004006 426 DMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN 505 (779)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (779)
+.++.+ +........+...+...|+.++|...|.+.++... --...|..|...+-..|+...|++.|++..+. .|+
T Consensus 175 ~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 175 EALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred HHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc
Confidence 999874 22344556667777889999999999999887522 13568999999999999999999999999885 454
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 004006 506 -MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (779)
Q Consensus 506 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 584 (779)
...|-.|.+.|...+.+++|+..|.+....... ..+.+..+...|...|.++-|+..|++.++..+. -...|+.|..
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nlan 328 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLAN 328 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHH
Confidence 568889999999999999999999998876433 5678888888999999999999999999998766 5678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 004006 585 GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTG 663 (779)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 663 (779)
++...|++.+|.+.|.+.+...+. .....+.|...|...|.+++|..+|....+- .|. ....+.|...|.+.|+++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHH
Confidence 999999999999999999987554 5778899999999999999999999998875 344 467899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 664 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
+|+..|++.+... +.-...|+.+...|...|+.+.|.+.+.+.+..+ +--...++.|..+|...|+..+|+.-+++.+
T Consensus 406 ~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 406 DAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 9999999999864 3346789999999999999999999999998865 4455678999999999999999999999998
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCC
Q 004006 744 QEGVQPD-VHTYTSFINACKCSKS 766 (779)
Q Consensus 744 ~~g~~pd-~~~~~~l~~a~~~~g~ 766 (779)
+ ++|| ...|-.++.+.....+
T Consensus 484 k--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 484 K--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred c--cCCCCchhhhHHHHHHHHHhc
Confidence 7 6787 3355555555433333
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=8.9e-24 Score=209.66 Aligned_cols=387 Identities=14% Similarity=0.125 Sum_probs=330.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~ 373 (779)
-..+|..+.+.+-..|++++|+.+++.+++...+ ....|-.+..+|...|+.+.|.++|.+.++.+ |+ .-..+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 5678899999999999999999999999998533 67899999999999999999999999998864 44 44556677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
..+...|+.++|...|.++++.... -.++|..|.-.+-..|+..+|+.-|++..+.+ +.-...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcch
Confidence 8888899999999999999987554 57789999999999999999999999999875 344678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN-MKTYSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
+|+..|.+....... ....+..|...|...|.++.|++.|++.++. .|+ ...|+.|.+++-..|++.+|...|.+.
T Consensus 270 ~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999998875322 4678888999999999999999999999885 455 678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004006 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVH 612 (779)
Q Consensus 533 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 612 (779)
+..... .....+.|...|...|.+++|..+|....+..+. -...++.|...|.+.|++++|+..|++.++..+. -..
T Consensus 347 L~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAd 423 (966)
T KOG4626|consen 347 LRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FAD 423 (966)
T ss_pred HHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHH
Confidence 886443 5678899999999999999999999999887655 4567888999999999999999999999885332 367
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (779)
.|+.+...|-..|+.+.|+..+.+.+.. .|. ...++.|...|...|+..+|+.-|+..++.. +.-...|..++.++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHH
Confidence 8999999999999999999999999875 344 4678999999999999999999999999875 33355666676665
Q ss_pred HHcC
Q 004006 692 CKSG 695 (779)
Q Consensus 692 ~~~g 695 (779)
.--.
T Consensus 501 q~vc 504 (966)
T KOG4626|consen 501 QIVC 504 (966)
T ss_pred HHHh
Confidence 4433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=7.4e-21 Score=214.53 Aligned_cols=489 Identities=11% Similarity=0.054 Sum_probs=324.3
Q ss_pred hHHHHHhhhcccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004006 238 NKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ 317 (779)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (779)
..-++.....+...|+. +.|...|+++++.+|. +...+..|+..|.+.|++++|+.
T Consensus 44 ~~~~f~~a~~~~~~Gd~---------~~A~~~l~~Al~~dP~---------------n~~~~~~LA~~yl~~g~~~~A~~ 99 (987)
T PRK09782 44 IYPRLDKALKAQKNNDE---------ATAIREFEYIHQQVPD---------------NIPLTLYLAEAYRHFGHDDRARL 99 (987)
T ss_pred HHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHH
Confidence 33344444446667777 8999999999999998 66777889999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--------HHccCCHHHHHHHH
Q 004006 318 TFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--------FAKMGNAEAADHWF 389 (779)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~ 389 (779)
.+++..+. .|+...|..++..+ +++++|..+++++.+.... +..++..+... |.+. ++|.+.+
T Consensus 100 ~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL 170 (987)
T PRK09782 100 LLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQL 170 (987)
T ss_pred HHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHH
Confidence 99999887 44555554444333 8888999999999887433 56666666665 5555 4444444
Q ss_pred HHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCC
Q 004006 390 EEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 390 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~g~ 467 (779)
+ .......++.. ....+..+|.+.|++++|++++.++.+.+ ..+......|...|.. .++ +++..++... +
T Consensus 171 ~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----l 243 (987)
T PRK09782 171 N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----I 243 (987)
T ss_pred H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----c
Confidence 4 32222232333 34444788888888888888888888875 4445556666667776 355 6666664432 2
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHH--HHHH----------------------------HHHHH
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK-HNMK--TYSM----------------------------LINGF 516 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~--~~~~----------------------------ll~~~ 516 (779)
+-|...+..++..|.+.|+.++|.++++++...... |... .|+. ++..+
T Consensus 244 k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (987)
T PRK09782 244 FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVL 323 (987)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 246667777777777777777777777665432111 1110 0000 01111
Q ss_pred ---------------------------------------------------------------HhcCCHHHHHHHHHHHH
Q 004006 517 ---------------------------------------------------------------LKLKDWANVFAVFEDVM 533 (779)
Q Consensus 517 ---------------------------------------------------------------~~~~~~~~a~~~~~~~~ 533 (779)
.+.|+.++|..+|++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~ 403 (987)
T PRK09782 324 LKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRY 403 (987)
T ss_pred HhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 12244444444444433
Q ss_pred HC-C-CC--------------------------------------------------------------C--CHHHHHHH
Q 004006 534 RD-G-LK--------------------------------------------------------------P--DVVLYNNI 547 (779)
Q Consensus 534 ~~-g-~~--------------------------------------------------------------~--~~~~~~~l 547 (779)
.. + .. . +...|..+
T Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L 483 (987)
T PRK09782 404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL 483 (987)
T ss_pred CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence 21 0 00 0 22233333
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (779)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 627 (779)
..++.. ++.++|+..+.+..... |+......+...+...|++++|+..|+++... .++...+..+..++.+.|++
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~ 558 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNG 558 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCH
Confidence 333333 45556666555555443 33322333344446788888888888887654 23344456667777888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 628 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
++|..++++.++.+ ..+...+..+...+...|++++|...+++.++.. |+...+..+..++.+.|++++|+..+++.
T Consensus 559 ~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 559 AARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888887764 2233333344444556699999999999998864 46788889999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP-DVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
.... +.+...++.+..++...|++++|+.++++.++. .| +...+..+..++...|+.++|...+++.
T Consensus 636 L~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 636 LELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8876 667788899999999999999999999999884 44 5677889999999999999999988764
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.7e-20 Score=208.86 Aligned_cols=431 Identities=11% Similarity=-0.020 Sum_probs=303.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.+..+.+.|.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|++.+++.++.+. .+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3556788999999999999999999876 56788899999999999999999999999998753 36788999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (779)
..|++++|+..|..+...+...+.. ...++..+.. ..+.....+..+.. +.+...+..+.. |...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 9999999999998776654332222 2222222211 22333333333332 222233333322 222211111222
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 458 VFERLKECGFSPS-IISYGCLINL---YTKIGKVSKALEVSKVMKSSG-IKH-NMKTYSMLINGFLKLKDWANVFAVFED 531 (779)
Q Consensus 458 ~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (779)
.++...+. .++ ...+..+... ....+++++|.+.|+...+.+ ..+ ....|..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 111 1111111111 123468889999999888754 222 455677788888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 532 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
.++.... +...|..+..++...|++++|+..|+++...... +...|..+...+...|++++|+..|++.++.... +.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 8876433 4567888888888999999999999998887654 5677888888899999999999999999887543 57
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF------TYE 685 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~ 685 (779)
..+..+..++.+.|++++|+..|++.+... +.+...|+.+..++...|++++|+..|++.+......+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 777888888999999999999999888653 4456788888899999999999999999988764221111 122
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
..+..+...|++++|..++++....+ +.+...+..+++++.+.|++++|+++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22223344689999999999988765 455567888999999999999999999998764
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.2e-20 Score=196.03 Aligned_cols=515 Identities=14% Similarity=0.100 Sum_probs=382.9
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHH--h--------------------hCCCCHHHHHHHHHH
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFE--R--------------------IKKPSRREFGLMVNY 305 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~~~~li~~ 305 (779)
+-|+|+. +.|+..|.++++.||.+...++.... . ...-++...+.|.+.
T Consensus 209 f~kl~~~---------~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 209 FWKLGMS---------EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANH 279 (1018)
T ss_pred HHhccch---------hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 5566665 88999999999999987666654311 0 123477788899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 306 YARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
|.-.|++..+..+.+.+...... .-..+|..+.++|...|++++|...|.+..+....--...+.-|+.+|.+.|+++
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 99999999999999998876321 1234688999999999999999999988776542211445566889999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTR----NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
.+...|+++.+.... +..+...|+..|...+ ..++|..++.+..+.- +.|...|-.+...|.+..-+.. +.+|
T Consensus 360 ~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~ 436 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAY 436 (1018)
T ss_pred HHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHH
Confidence 999999999987544 7778888888887775 5677777777777764 5577788888777766554444 7766
Q ss_pred HHHH----HCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHH
Q 004006 460 ERLK----ECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS---GIKHNM------KTYSMLINGFLKLKDWANVF 526 (779)
Q Consensus 460 ~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~ 526 (779)
.... ..+-..-....|.+...+...|++++|...|...... ...++. .+-..+...+-..++++.|.
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 6554 3344456778899999999999999999999888765 122222 23344666777788999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 606 (779)
+.|..+.+..+. -...|-.++.+.-..++..+|...++++...+-. +...+..+...+.+...+..|.+-|..+.+.-
T Consensus 517 e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 517 EMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 999999886322 2344555554444567888999999998876543 66677777778888889998988777776542
Q ss_pred C-CCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 607 C-IPTVHTFNALILGLVE------------KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 607 ~-~~~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
. .+|..+.-+|.+.|.. .+.+++|+.+|.+.+... +-|...-+.+.-+++..|++.+|..+|.++.
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVR 673 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence 2 2466666666665543 345788999999988765 5677777888888999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004006 674 NEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ-KIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (779)
Q Consensus 674 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (779)
+.. ..+..+|..+..+|..+|++..|+++|+...+. .-..+..+.++|.+++.+.|++.+|.+.+......-..-..+
T Consensus 674 Ea~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 674 EAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 875 345668899999999999999999999988754 334577889999999999999999999999888754333345
Q ss_pred HHHHHHHHH------------------HhcCCcchHHHhHhhhc
Q 004006 753 TYTSFINAC------------------KCSKSNQRNGRSWSEAK 778 (779)
Q Consensus 753 ~~~~l~~a~------------------~~~g~~~~a~~~~~~m~ 778 (779)
.||..+... ...++.++|.++|.+|+
T Consensus 753 ~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 753 KFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 566544332 11245677777777765
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=8.9e-20 Score=203.04 Aligned_cols=427 Identities=10% Similarity=-0.033 Sum_probs=310.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+......+.+.|++++|++.|++.++. .|+...|..+..+|.+.|++++|++.++++++.+.. +..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3455677888999999999999999885 467889999999999999999999999999988654 7789999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
..|++++|+..|..+...+...+.. ...++..+.. ..+........+.. ..+...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 9999999999887776543221211 1222222111 12222233333321 12233333333322 2222222222
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004006 493 VSKVMKSSGIKHN-MKTYSMLING---FLKLKDWANVFAVFEDVMRDG-LKP-DVVLYNNIIRAFCGMGNMDRAIHIVKE 566 (779)
Q Consensus 493 ~~~~m~~~~~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (779)
.+....+. .+. ...+..+... ....+++++|.+.|+...+.+ ..+ +...|..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22211111 111 0111111111 123478999999999998865 222 456788888899999999999999999
Q ss_pred HHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE 646 (779)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 646 (779)
.+..... ....|..+...+...|++++|+..|+++.+.... +...|..+...+...|++++|+..|++.++.. +.+.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 9987554 4567888888999999999999999999887544 67889999999999999999999999999875 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH------HHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF------VYN 720 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~ 720 (779)
..+..+..++.+.|++++|+..|+++++.. +.+...++.+..++...|++++|...|++.....-..+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 778888999999999999999999999864 5578899999999999999999999999998764111111 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
..+..+...|++++|.+++++.++. .|+ ...+..++..+...|+.++|.++|++.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2223344479999999999999875 344 557889999999999999999999864
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.2e-19 Score=185.86 Aligned_cols=504 Identities=11% Similarity=0.085 Sum_probs=343.4
Q ss_pred hHHHHHHHHHHhcCCcc--------HH---------HHHHHHHhhCCCCHHHHHHHH---HHHH---HcCChHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPEN--------WQ---------AVVSAFERIKKPSRREFGLMV---NYYA---RRGDMHRARQTFE 320 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~li---~~~~---~~g~~~~A~~~~~ 320 (779)
-.|..+|.+++..+|.. |. .+..+|.+.-..++....+++ -.-. ....+..++.++.
T Consensus 181 ~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~ 260 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQ 260 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 78899999988888742 22 233345444333332222221 1111 2223556666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 321 NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
+.-..+ ..+..+.+.|.+.|.-.|++..++.+...++..-.. .-...|..++++|-..|++++|..+|.+.......
T Consensus 261 ~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 261 RAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 665543 236677778888887888888888888777664211 12445777888888888888888888887776544
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHhhH
Q 004006 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG----NEEKCLIVFERLKECGFSPSIISY 474 (779)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~ 474 (779)
--+..+..++..|...|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..+.- ..|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 235566777888888888888888888887763 555666677777776664 4566667776666653 2366677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------
Q 004006 475 GCLINLYTKIGKVSKALEVSKVMK----SSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD---GLKPDV------ 541 (779)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~------ 541 (779)
..+..++....-+.. +.+|.... ..+........|.+...+...|++.+|...|+..... ...+|.
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 666666655444433 66555433 3444567778888888888888888888888777654 112222
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (779)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 621 (779)
.+-..+...+-..++++.|.++|..+.+..+. -...|..++.+....+...+|...+..+...+- .+...+..+...+
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLH 574 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHH
Confidence 23334556667777888888888888876433 233344443333344677788888888776543 3666677777788
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004006 622 VEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYAS------------LGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (779)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 688 (779)
.+...+..|.+-|......- ..+|....-.|.+.|.. .+..++|+++|.+++... +-|...-|.++
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchh
Confidence 88888888877666554332 23566666666665532 345789999999999886 45888889999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCc
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQPDVHTYTSFINACKCSKSN 767 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~a~~~~g~~ 767 (779)
-+++..|++.+|..+|.+..+.. .....+|-.+..+|...|+|..|++.|+...+. +-.-+..+...|..++...|.+
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999998764 345678889999999999999999999987765 3344677889999999999999
Q ss_pred chHHHhHh
Q 004006 768 QRNGRSWS 775 (779)
Q Consensus 768 ~~a~~~~~ 775 (779)
.+|.+...
T Consensus 733 ~eak~~ll 740 (1018)
T KOG2002|consen 733 QEAKEALL 740 (1018)
T ss_pred HHHHHHHH
Confidence 99988764
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=8.9e-21 Score=200.71 Aligned_cols=312 Identities=14% Similarity=0.143 Sum_probs=218.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN---MKTYSMLINGFLKLK 520 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~ 520 (779)
..+...|++++|+..|.++.+.+. .+..++..++..+...|++++|..+++.+.......+ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344455666666666666655432 1344556666666666666666666666655321111 234556666667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhcCCHHHHH
Q 004006 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRAL 596 (779)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 596 (779)
++++|..+|+++.+... .+..++..++.++.+.|++++|.++++.+...+..... ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777665422 24556667777777777777777777777665433211 13445666777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 676 (779)
.+|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......++..++.+|...|++++|..+++++.+..
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888875432 4667777888899999999999999998875422224567888899999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 004006 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR---RGDVWEAADLMQQMKQEGVQPDVHT 753 (779)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~ 753 (779)
|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+..++..++++|.+.++.+|..
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 45556688999999999999999999998876 4888888888877664 568999999999999888777765
Q ss_pred HHHHHHHHHhcCCcc
Q 004006 754 YTSFINACKCSKSNQ 768 (779)
Q Consensus 754 ~~~l~~a~~~~g~~~ 768 (779)
..|.+.|...
T Consensus 355 -----~~c~~cg~~~ 364 (389)
T PRK11788 355 -----YRCRNCGFTA 364 (389)
T ss_pred -----EECCCCCCCC
Confidence 3466666543
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=7.5e-18 Score=190.38 Aligned_cols=494 Identities=10% Similarity=0.007 Sum_probs=334.1
Q ss_pred hHHHHHHHHHHhcCCccHHH-----HH----------------HHH-HhhCCC--CHHHHHHH-HHHHHHcCChHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQA-----VV----------------SAF-ERIKKP--SRREFGLM-VNYYARRGDMHRARQT 318 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~-----~~----------------~~~-~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~ 318 (779)
+.|...|.+++..+|.+-.. .. .+. .+...+ .......+ .+.|.+.|+|++|+++
T Consensus 125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 77888888888888764211 11 011 111122 34433333 7788888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 004006 319 FENMRARGIEPTLHVYTNLIHAYAV-GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (779)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (779)
+.++.+.+.. +......|..+|.. .++ +++..+++.. +.-+...+..++..|.+.|+.++|.+++.++.....
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 8888887533 45556666667776 356 7777775532 224777888888888888888888888877644321
Q ss_pred C-CChhhH------------------------------HHHHHHHHhcCChHHHHHHH----------------------
Q 004006 398 T-LNAIIY------------------------------GNIIYAQCQTRNMERAEALV---------------------- 424 (779)
Q Consensus 398 ~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~---------------------- 424 (779)
. +...+| ..++..+.+.+.++-++++.
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 1 111111 11133344444444333331
Q ss_pred -------HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHHcCC---HHHHHH
Q 004006 425 -------RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC-G-FSPSIISYGCLINLYTKIGK---VSKALE 492 (779)
Q Consensus 425 -------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~ 492 (779)
+.|.+. .+.+......+.....+.|+.++|..+|...... + -..+....+.++..|.+.+. ..++..
T Consensus 359 ~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 111111 0223333444444556778888888888877652 1 12234455577777777766 223322
Q ss_pred H----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 493 V----------------------SKVMKSS-GI-KH--NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN 546 (779)
Q Consensus 493 ~----------------------~~~m~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 546 (779)
+ +...... +. .. +...|..+..++.. ++.++|+..|.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 2 1112111 11 23 56677778777776 78888999888877653 55444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 547 IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626 (779)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 626 (779)
+...+...|++++|...|+++.... ++...+..+..++.+.|++++|...++..++.... +...+..+...+...|+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCC
Confidence 4556678999999999999986653 33445667777889999999999999999986532 33334344445556699
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004006 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKE 706 (779)
Q Consensus 627 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (779)
+++|+..+++.++. .|+...|..+..++.+.|+.++|+..|++++... +.+...++.+..++...|++++|+.++++
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999976 4678889999999999999999999999999986 56788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 707 MSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV-HTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
..+.. +.+...+..+..++...|++++|+..+++.++ +.|+. .+............+++.+.+-+++
T Consensus 669 AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 669 AHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99876 67788999999999999999999999999997 45654 4455556666666667766665543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.4e-18 Score=192.51 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=220.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
...++..+.+.|++++|+.+++........ +...+..++.++...|++++|+..|+++++... .+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 334566677778888888888777776433 344555555666667888888888888777642 256677777777778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (779)
.|++++|+..|+++.+..+. +...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 88888888888887776433 56677777777777888888887777776653 2233333333 236677777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 004006 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN----VFAVFEDVMR 534 (779)
Q Consensus 459 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~ 534 (779)
++.+.+.....+...+..++..+.+.|++++|+..++++.+.. ..+...+..+...|...|++++ |+..|+++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 7777665322233444455666777777777777777777653 2355666667777777777764 6777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (779)
Q Consensus 535 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 614 (779)
.... +...+..+...+.+.|++++|+..++++....+. +...+..+..++.+.|++++|+..|+.+.+.... +...+
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 5443 5566777777777777777777777777766544 4445566666777777777777777777665332 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 615 NALILGLVEKRQMEKAIEILDEMTLA 640 (779)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~ 640 (779)
..+..++...|++++|+..|++..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33455667777777777777777654
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.6e-20 Score=195.24 Aligned_cols=291 Identities=14% Similarity=0.155 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT---LHVYTNLIHA 340 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 340 (779)
+.|...|.+++..+|. +...+..+...|.+.|++++|+.+++.+.......+ ...+..+...
T Consensus 52 ~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 52 DKAIDLFIEMLKVDPE---------------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5666666666666554 333455566666666666666666666655421111 1345555666
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCC
Q 004006 341 YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN----AIIYGNIIYAQCQTRN 416 (779)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 416 (779)
|.+.|++++|+.+|+++.+.. +.+..++..++.+|.+.|++++|++.|+++.+.+.... ...+..++..+.+.|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 666666666666666665542 22455566666666666666666666666655433211 1123445555556666
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++|+++|+++.+.. +.+...+..+...|.+.|++++|+++|+++.+.+......+++.++.+|.+.|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665543 2234455555566666666666666666655432211123455555566666666666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCC
Q 004006 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG---MGNMDRAIHIVKEMQKERHR 573 (779)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 573 (779)
+.+. .|+...+..++..+.+.|++++|..+|+++.+. .|+...++.++..+.. .|+.++++.++++|.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 5554 234344455555566666666666666555543 3455555555554443 33555555555555554443
Q ss_pred CC
Q 004006 574 PT 575 (779)
Q Consensus 574 ~~ 575 (779)
++
T Consensus 351 ~~ 352 (389)
T PRK11788 351 RK 352 (389)
T ss_pred CC
Confidence 33
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=4.5e-18 Score=192.74 Aligned_cols=424 Identities=10% Similarity=-0.005 Sum_probs=238.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+.....-.+......|+.++|+++++++.... ..+...+..+..++.+.|++++|..+|++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33333444555555666666666666665421 2244456666666666666666666666666542 224555566666
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
++...|++++|+..++++.+..+. +.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 666666666666666666665333 444 6666666666666666666666666653 3344444555555666666666
Q ss_pred HHHHHHHHHHCCCCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHH
Q 004006 455 CLIVFERLKECGFSPSI------ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDW---ANV 525 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a 525 (779)
|+..++++.. .|+. .....++..+... .....+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~------------------------------~~~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMP------------------------------TRSEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccc------------------------------ccChhHHHHHHHHH
Confidence 6666554432 1210 0000011111000 00111222 455
Q ss_pred HHHHHHHHHC-CCCCCHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHHhcCCHHHHHHH
Q 004006 526 FAVFEDVMRD-GLKPDVV-L----YNNIIRAFCGMGNMDRAIHIVKEMQKERHR-PTSRTFMPIIHGFARAGEMKRALEI 598 (779)
Q Consensus 526 ~~~~~~~~~~-g~~~~~~-~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 598 (779)
+..++.+.+. ...|+.. . ....+.++...|++++|+..|+.+...+.. |+. ....+..+|...|++++|+.+
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 5555555532 1111110 0 011122334556666677666666665422 111 112235566666777777777
Q ss_pred HHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCC
Q 004006 599 FDMMRRSGCIP---TVHTFNALILGLVEKRQMEKAIEILDEMTLAGI-----------SPN---EHTYTTIMHGYASLGD 661 (779)
Q Consensus 599 ~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~ 661 (779)
|+++.+..... ....+..|..++...|++++|..+++.+.+... .|+ ...+..+...+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 76665543211 123344455566667777777777776665420 122 1234556667777888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+++|+++++++.... +.+...+..++..+...|+.++|++.++++.+.. +.+...+..++..+.+.|++++|+.++++
T Consensus 375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888887764 4567777888888888888888888888887765 55566667777778888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHH
Q 004006 742 MKQEGVQPDVHTYTSFINAC 761 (779)
Q Consensus 742 m~~~g~~pd~~~~~~l~~a~ 761 (779)
+++ ..||......|-...
T Consensus 453 ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 453 VVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHH--hCCCCHHHHHHHHHH
Confidence 877 355544444444333
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.9e-18 Score=191.39 Aligned_cols=335 Identities=7% Similarity=-0.005 Sum_probs=274.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.-...++..+.+.|++++|+.+++..+..... +...+..++.++...|++++|+..|+++....+. +...+..++.++
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 34556777888999999999999999987543 5667777778888899999999999999998655 778899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 491 (779)
...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+...... +...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999999874 556778888999999999999999999988765432 33334333 3478899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHH
Q 004006 492 EVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDR----AIHIVKEM 567 (779)
Q Consensus 492 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~ 567 (779)
.+++.+.+.....+...+..+..++...|++++|+..|+++.+.... +...+..+..++...|++++ |+..|+++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99999877643344555566678888999999999999999987544 67788889999999999886 79999999
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 004006 568 QKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE- 646 (779)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~- 646 (779)
....+. +...+..+...+.+.|++++|+..++++.+.... +...+..+..+|.+.|++++|+..|+++...+ |+.
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 887665 6678888899999999999999999999987654 56677788889999999999999999988763 443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 676 (779)
..+..+..++...|+.++|...|+++.+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 334445677889999999999999998764
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=6.8e-17 Score=178.89 Aligned_cols=448 Identities=12% Similarity=0.063 Sum_probs=334.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL--HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+.+....+-..++.|+++.|+..|+++.+.. |+. ..+ .++..+...|+.++|+..+++..... .........++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 3344445666779999999999999999874 443 244 88888889999999999999998321 22334444446
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
..|...|++++|+++|+++.+..+. +...+..++..|.+.++.++|++.++++... .++...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 7899999999999999999998766 6778888899999999999999999999887 344555555555555567776
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHH-HH----hcCC-
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY------SMLING-FL----KLKD- 521 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~ll~~-~~----~~~~- 521 (779)
+|++.++++.+... -+...+..++.++.+.|-...|+++..+-... +.+....+ ..+++. .. ...+
T Consensus 187 ~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 187 DALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 79999999998743 26777888899999999999999877653321 11111111 011110 00 1122
Q ss_pred --HHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 004006 522 --WANVFAVFEDVMRD-GLKPDV-----VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMK 593 (779)
Q Consensus 522 --~~~a~~~~~~~~~~-g~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (779)
.+.|+.-++.+... +..|.. ....-.+-++...|++.++++.|+.+...+......+...+.++|...++.+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34556666665542 222321 1222345578899999999999999999887666678888999999999999
Q ss_pred HHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHH
Q 004006 594 RALEIFDMMRRSGC-----IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI-------------SPNEH-TYTTIMH 654 (779)
Q Consensus 594 ~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------------~~~~~-~~~~li~ 654 (779)
+|+.+|+.+..... .++......|..+|...+++++|..+++++.+... .||-. .+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999976431 22444467888999999999999999999987311 12322 3445667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 655 GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWE 734 (779)
Q Consensus 655 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 734 (779)
.+...|++.+|.+.++++.... +-|..+...+...+...|+..+|+++++.+.... +.+..+...++.++...|++++
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 7889999999999999998886 6799999999999999999999999998777664 6677788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q 004006 735 AADLMQQMKQEGVQPDVHTYTS 756 (779)
Q Consensus 735 A~~~~~~m~~~g~~pd~~~~~~ 756 (779)
|.++++.+.+. .|+......
T Consensus 503 A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 503 MELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHhh--CCCchhHHH
Confidence 99999999874 555443333
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.4e-17 Score=188.72 Aligned_cols=388 Identities=11% Similarity=0.072 Sum_probs=234.6
Q ss_pred HHHHHHHHhhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 004006 282 QAVVSAFERIK---KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (779)
Q Consensus 282 ~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (779)
..++..|.... ..+...+..+...+...|++++|+.+|+++++... .+...+..++.++...|++++|+..+++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555433 34566789999999999999999999999998742 356678888899999999999999999999
Q ss_pred HcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--
Q 004006 359 EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI-- 436 (779)
Q Consensus 359 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 436 (779)
+.. +.+.. +..+..++...|+.++|+..|+++.+..+. +...+..++.++...+..++|++.++.+.. .|+.
T Consensus 111 ~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 111 SGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred HhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 874 33566 989999999999999999999999998665 777778888899999999999999877654 2221
Q ss_pred ----hhHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004006 437 ----DIYHMMMDGYTI-----IGNE---EKCLIVFERLKEC-GFSPSII-SYGCLINLYTKIGKVSKALEVSKVMKSSGI 502 (779)
Q Consensus 437 ----~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 502 (779)
.....++..+.. .+++ ++|++.++.+.+. ...|+.. .+..
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~-------------------------- 238 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR-------------------------- 238 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH--------------------------
Confidence 011112222211 1112 3444444444432 1111110 0000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---Cccc
Q 004006 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP---TSRT 578 (779)
Q Consensus 503 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 578 (779)
.....+.++...+++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++....... ....
T Consensus 239 -----a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 239 -----ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred -----HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 0000012223334444455545444443321 111 11112334444555555555555444332110 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004006 579 FMPIIHGFARAGEMKRALEIFDMMRRSGC-----------IPT---VHTFNALILGLVEKRQMEKAIEILDEMTLAGISP 644 (779)
Q Consensus 579 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 644 (779)
...+..++.+.|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~ 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PG 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 22333344455555555555555444311 112 1234455566677777777777777776653 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004006 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (779)
Q Consensus 645 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (779)
+...+..+...+...|+.++|++.+++++... +.+...+..++..+...|++++|+.+++++.+.
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55667777777777777777777777777764 344556666666777777777777777777765
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.3e-16 Score=176.78 Aligned_cols=442 Identities=10% Similarity=0.038 Sum_probs=331.0
Q ss_pred hhhcccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 244 ARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMR 323 (779)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (779)
...+..+.|++ +.|+..|.+++..+|. +......++..+...|+.++|+..+++..
T Consensus 40 ~aii~~r~Gd~---------~~Al~~L~qaL~~~P~---------------~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 40 SLIIRARAGDT---------APVLDYLQEESKAGPL---------------QSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred HHHHHHhCCCH---------HHHHHHHHHHHhhCcc---------------chhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 34458899998 8999999999999996 32122267888889999999999999998
Q ss_pred HCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh
Q 004006 324 ARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAII 403 (779)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (779)
... .........+...|...|++++|+++|+++++.... +...+..++..|...++.++|++.++++..... +...
T Consensus 96 ~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~ 171 (822)
T PRK14574 96 SSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQN 171 (822)
T ss_pred cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHH
Confidence 321 122333444466888899999999999999997544 678888889999999999999999999988744 3444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH------HHH
Q 004006 404 YGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISY------GCL 477 (779)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~------~~l 477 (779)
+..++..+...++..+|++.++++.+.+ +.+...+..++..+.+.|-...|+++..+-.+. +.+...-+ ..+
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 5555556656777777999999999985 667888899999999999999998876654322 11111111 011
Q ss_pred HHHH---H--HcC---CHHHHHHHHHHHHHC-CCCCC-HHH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004006 478 INLY---T--KIG---KVSKALEVSKVMKSS-GIKHN-MKT----YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543 (779)
Q Consensus 478 i~~~---~--~~g---~~~~A~~~~~~m~~~-~~~~~-~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 543 (779)
+..- . ... -.+.|+.-++.+... +..|. ... ..-.+-++...+++.++++.|+.+...+...-.++
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1110 0 111 234455556665542 11232 122 22345677889999999999999999887666778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------
Q 004006 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERH-----RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC----------- 607 (779)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 607 (779)
-..+..+|...++.++|+.+|+.+..... .++......|..+|...+++++|..+++.+.+.-.
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 88999999999999999999999976542 11222346788899999999999999999987322
Q ss_pred --CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 608 --IPTV-HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684 (779)
Q Consensus 608 --~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 684 (779)
.||- ..+..++..+...|++.+|++.++++.... +-|......+...+...|...+|+..++.+.... +.+..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHH
Confidence 1232 233455677889999999999999998764 6788899999999999999999999998887764 5577788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004006 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVY 719 (779)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 719 (779)
...+.++...|++++|..+.+++.+.. |+....
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~ 520 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRS--PEDIPS 520 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhH
Confidence 889999999999999999999998764 544433
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=3.4e-16 Score=150.53 Aligned_cols=460 Identities=16% Similarity=0.136 Sum_probs=325.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC----CHhHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY-TNLIHAYAVGRDMEEALSCVRKMKEEGIEM----SLVTYSII 372 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~l 372 (779)
....|..-|..+..+.+|+..|+.+++...-|+.-.. -.+.+.+.+...+.+|+++|+-.+..-... .....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4445677788888899999999999987666665443 335577889999999999998777642222 23455666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------------CCChhhHH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI------------DAPIDIYH 440 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~~~~ 440 (779)
...+.+.|+++.|+..|+.+.+. .||..+-..|+.++...|+.++..+.|.+|+..-. .|+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 67788999999999999999876 57888888888899999999999999999986322 22333333
Q ss_pred HHHH-----HHHhcC--CHHHHHHHHHHHHHCCCCCCHhh---H------------------HHHHHHHHHcCCHHHHHH
Q 004006 441 MMMD-----GYTIIG--NEEKCLIVFERLKECGFSPSIIS---Y------------------GCLINLYTKIGKVSKALE 492 (779)
Q Consensus 441 ~l~~-----~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~---~------------------~~li~~~~~~g~~~~A~~ 492 (779)
..+. ...+.. +.++++..--+++.--+.||... | ..-..-|.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 3321 111111 12223222222221111111100 0 012345778999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004006 493 VSKVMKSSGIKHNMKTYSMLINGF--LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (779)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 570 (779)
+++-+.+.+-+.-...-+.|-..+ ...+++..|.+.-+..+..+- -+......-.+.....|++++|.+.|++.+..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 999887765443333444443333 335678888887777664321 13333333444556689999999999999886
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004006 571 RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT 650 (779)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 650 (779)
.-.-....| .+.-.+...|++++|++.|-++...- .-+..++.-+.+.|-...+...|++++...... ++.|....+
T Consensus 520 dasc~ealf-niglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALF-NIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 433222222 23335778899999999998765431 126777778888899999999999999877654 466778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hc
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA-RR 729 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 729 (779)
.|...|-+.|+-.+|++++-+--.. ++.+..+...|...|....-+++++.+|++..- +.|+..-|..|+..|+ |.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 9999999999999999887765544 467888889999999999999999999998865 4799999988877665 67
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 004006 730 GDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSN 767 (779)
Q Consensus 730 g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~ 767 (779)
|++++|.++++...++ +.-|.....-|+..|...|..
T Consensus 674 gnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999999999999886 777888888999999888754
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=5.1e-15 Score=155.31 Aligned_cols=471 Identities=14% Similarity=0.122 Sum_probs=337.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
..+.+.-.|++++|..++.+.++... .+...|.+|...|-..|+.++++..+-..-..+. -|...|..+.....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhccc
Confidence 34445555999999999999999853 3778999999999999999999998866666543 377999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPID----IYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~ 457 (779)
++.|.-+|.++++..+. +...+..-...|-+.|+..+|.+.|.++....-+.|.. .-..+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999998655 67777777889999999999999999999975322322 23344667778888899999
Q ss_pred HHHHHHHCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---------------------------CCHHHH
Q 004006 458 VFERLKECG-FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK---------------------------HNMKTY 509 (779)
Q Consensus 458 ~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---------------------------~~~~~~ 509 (779)
.++.....+ -.-+...++.++..+.+..+++.|......+...... .+..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 998877632 2235567889999999999999999988887762222 222221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVMRDG--LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA 587 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (779)
.+.-++...+..+....+...+.+.. +.-+...|..+..+|...|++.+|+.+|..+......-+...|..+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 12233344444444444444455544 344567888899999999999999999999998877667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhc
Q 004006 588 RAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA--------GISPNEHTYTTIMHGYASL 659 (779)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~ 659 (779)
..|.+++|.+.|..++...+. +...--.|-..+.+.|+.++|.+.+..+..- ...++..........+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 999999999999999987543 4555666777889999999999999986522 2345555666677788888
Q ss_pred CCHHHHHHHHHHHHHcCC----------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH------HhCC
Q 004006 660 GDTGKAFEYFTKLRNEGL----------------------ELDVFTYEALLKACCKSGRMQSALAVTKEM------SAQK 711 (779)
Q Consensus 660 g~~~~a~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~ 711 (779)
|+.++-+.+...|+.... .-.....-..+.+-.+.++.....+.+..- ...+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 998876666665554211 111222222333333333322222211111 1122
Q ss_pred CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 712 IPRNTF--VYNILIDGWARRGDVWEAADLMQQMKQEGV-QPDVH----TYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 712 ~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~----~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+..+.+ .+.-++..+++.+++++|+.++..+.+..+ .-|.. .-...+.++...+++..|..+++.|
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222332 446678889999999999999999886532 22332 2345667788899999999998876
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=1.8e-13 Score=138.05 Aligned_cols=450 Identities=10% Similarity=0.034 Sum_probs=240.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 004006 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFE 390 (779)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (779)
..+.|+-++.++.+. +.-+...| -+|++...|+.|.+++++..+. ++-+..+|.+....--..|..+...++++
T Consensus 391 ~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344466666666554 12222222 3344445566666666666554 44456666666666666666666666555
Q ss_pred HHH----HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 391 EAK----ERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 391 ~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
+.. ..|+..+...|..=...|-+.|..--+..+....+..|+.. ...+|+.-...|.+.+.++-|..+|...++
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 432 23455555566666666666666665555655555555422 234555555666666666666666665555
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 465 CGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544 (779)
Q Consensus 465 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 544 (779)
.- .-+...|...+..--..|..++...+|++....- +-....|-.....+-..|++..|..++.++.+.... +...|
T Consensus 545 vf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 545 VF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred hc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 42 2244455555555555555666666665555542 223334444444455556666666666555554333 44555
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004006 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK 624 (779)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 624 (779)
-..+.......++++|..+|.+.... .++...|.--+....-.++.++|++++++.++.- ..-...|-.+...+-+.
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHH
Confidence 55555555556666666666555543 2344444444444444555566666665555531 11233444445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004006 625 RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVT 704 (779)
Q Consensus 625 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (779)
++++.|.+.|..-... .+.....|-.|...=.+.|..-+|..+|++.+-.+ +-+...|...|.+-.+.|+.+.|..++
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555443332 12223344444444445555555555555555544 335555555555555555555555554
Q ss_pred HHHHhCC-----------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHH
Q 004006 705 KEMSAQK-----------------------------IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTY 754 (779)
Q Consensus 705 ~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~ 754 (779)
.++.... ...|..+...+...|....++++|.+.|.+.+.. .|| ..+|
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~w 854 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAW 854 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHH
Confidence 4443221 1234455555666666677777788888777764 333 4567
Q ss_pred HHHHHHHHhcCCcchHHHhHhh
Q 004006 755 TSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 755 ~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
..+..-+..+|.-+.-.++++.
T Consensus 855 a~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 7777777777766555555543
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=6.6e-14 Score=141.17 Aligned_cols=466 Identities=14% Similarity=0.110 Sum_probs=381.6
Q ss_pred hHHHHHHHHHHhcCCcc---HHH------------HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HH
Q 004006 264 EWHRREFRKAVETQPEN---WQA------------VVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENM----RA 324 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 324 (779)
++|+-++.++.+.=|.+ |.. ++..+...-+-++.+|.+-...=-++|+.+...++..+. ..
T Consensus 393 ~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 393 EDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 56888889998887765 322 222233344557888887777777889988888887764 44
Q ss_pred CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 004006 325 RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI 402 (779)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (779)
.|+..+...|-.=...|-..|..-.+..+....+..|++- -..||+.-...|.+.+.++-|+.+|..+++..+. +..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhH
Confidence 6788888889888889999999999999999888877653 2568999999999999999999999999887544 788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (779)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 482 (779)
.|..++..--..|..++-..+|+++...- +.....|.+....+...|+...|..++....+.... +...|-..+....
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 89999888889999999999999999873 556677888889999999999999999999887544 7788999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHH
Q 004006 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD-VVLYNNIIRAFCGMGNMDRAI 561 (779)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~ 561 (779)
...++++|.++|.+.+.. .++..+|..-++..--.++.++|++++++.++. .|+ .-.|-.+...+.+.++++.|.
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999998875 567888877777777789999999999999886 333 346777778899999999999
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 562 HIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG 641 (779)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 641 (779)
..|..-.+.-+. ..-.|..|...-.+.|.+-.|..++++.+..++. +...|-..|.+-.+.|+.+.|..++.+.++.-
T Consensus 706 ~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 706 EAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888776555333 5567888888888889999999999999988776 88999999999999999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004006 642 ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721 (779)
Q Consensus 642 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (779)
+.+...|..-|....+.++--++...+++. .-|..++..+...|.....++.|.+.|.+.++.+ +.+..+|..
T Consensus 784 -p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~ 856 (913)
T KOG0495|consen 784 -PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAW 856 (913)
T ss_pred -CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHH
Confidence 556678888888777777755555555544 3466778888999999999999999999999876 566678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 722 LIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
+...+.++|.-++-.+++.+....
T Consensus 857 fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcc
Confidence 899999999988889999888763
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=2.5e-14 Score=150.16 Aligned_cols=492 Identities=11% Similarity=0.107 Sum_probs=341.2
Q ss_pred cccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004006 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARG 326 (779)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (779)
.|.+ |+. +.|.+++.+++..+|. +...|..|..+|-+.|+.++++..+-.+...+
T Consensus 149 lfar-g~~---------eeA~~i~~EvIkqdp~---------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 149 LFAR-GDL---------EEAEEILMEVIKQDPR---------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred HHHh-CCH---------HHHHHHHHHHHHhCcc---------------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 3555 787 9999999999999996 67789999999999999999998887777665
Q ss_pred CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh---
Q 004006 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAII--- 403 (779)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--- 403 (779)
+.|...|-.+.....+.|++++|.-+|.+.++.. +.+-....--+.+|-+.|+...|...|.++....+..+..-
T Consensus 204 -p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 204 -PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred -CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 3477899999999999999999999999999875 33666666778889999999999999999998765334333
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------
Q 004006 404 -YGNIIYAQCQTRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG--------------- 466 (779)
Q Consensus 404 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g--------------- 466 (779)
....+..+...++.+.|.+.++.....+ -..+...++.++..|.+...++.+......+....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 3344556677788888998888877632 23456678899999999999999998888776611
Q ss_pred ------------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 467 ------------FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 467 ------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
+..+...+ .++-++.+....+....+...+.+.+ ..-+...|.-+..+|...|++.+|+.+|..+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 12222221 22233344444444444444555555 3335567888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH--------
Q 004006 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR-------- 604 (779)
Q Consensus 533 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 604 (779)
......-+..+|-.+..+|...|.+++|.+.|+++....+. +...-..|...+.+.|+.++|.+.+..+..
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 88766667889999999999999999999999999987654 555666778889999999999999988542
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCH
Q 004006 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG----------------------ISPNEHTYTTIMHGYASLGDT 662 (779)
Q Consensus 605 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----------------------~~~~~~~~~~li~~~~~~g~~ 662 (779)
.+..++....-.....+.+.|+.++=+.+...|+... ..-...+...++.+-.+.++.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 2334455555556667778888776554444443211 111122223333343444332
Q ss_pred HHHHHHHHHH------HHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhc
Q 004006 663 GKAFEYFTKL------RNEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIP-RNTF----VYNILIDGWARR 729 (779)
Q Consensus 663 ~~a~~~~~~~------~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~ 729 (779)
.....-+..- ...++..+ -..+..++.++++.+++++|+.+...+....+. -+.. .=..++.+....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~ 679 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYA 679 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 2221111111 11122211 235677788899999999999999988764321 1222 225566677788
Q ss_pred CCHHHHHHHHHHHHHc-CCC--CC-HHHHHHHHHHHHhcCCc
Q 004006 730 GDVWEAADLMQQMKQE-GVQ--PD-VHTYTSFINACKCSKSN 767 (779)
Q Consensus 730 g~~~~A~~~~~~m~~~-g~~--pd-~~~~~~l~~a~~~~g~~ 767 (779)
+++.+|..+++.|... ++. +. ...|++..+...+.|+-
T Consensus 680 ~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 680 RDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR 721 (895)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 222 22 22455455555555543
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.3e-13 Score=130.39 Aligned_cols=473 Identities=12% Similarity=0.086 Sum_probs=345.3
Q ss_pred hHHHHHhhhc-ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004006 238 NKAEVRARWV-AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRAR 316 (779)
Q Consensus 238 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (779)
+++..-..|| |++=... .++...|+.+|.++|..+-. +...|..-+.+=.++.+...|+
T Consensus 68 rnR~~~~~WikYaqwEes-----q~e~~RARSv~ERALdvd~r---------------~itLWlkYae~Emknk~vNhAR 127 (677)
T KOG1915|consen 68 RNRLNMQVWIKYAQWEES-----QKEIQRARSVFERALDVDYR---------------NITLWLKYAEFEMKNKQVNHAR 127 (677)
T ss_pred HHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHhhhhHhHHH
Confidence 3445567788 7766544 56668899999999987754 4555666777778888899999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 317 QTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.++++++..-.. -...|...+.+--..|++..|.++|++-.+ ..|+...|++.++.-.+.+.++.|..+|++..-.
T Consensus 128 Nv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~- 203 (677)
T KOG1915|consen 128 NVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV- 203 (677)
T ss_pred HHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-
Confidence 999999876322 334566666666677999999999998887 4789999999999999999999999999998875
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--Hh
Q 004006 397 ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE-GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--II 472 (779)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~ 472 (779)
.|++..|...+..-.+.|++..|..+|....+. |. ..+...+.++...-..+..++.|.-+|.-.++.- +.+ ..
T Consensus 204 -HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raee 281 (677)
T KOG1915|consen 204 -HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEE 281 (677)
T ss_pred -cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHH
Confidence 478889998888888999999999999888764 11 1223445555565667788888998888877652 222 33
Q ss_pred hHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HH
Q 004006 473 SYGCLINLYTKIGKVSKALEV--------SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV-VL 543 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~ 543 (779)
.|..+...--+.|+.....+. |+.+.+.+ ..|-.+|--.++.....|+.+...++|++.+.+-..... ..
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 444444444445654433332 44455543 457788888888888889999999999999876322111 12
Q ss_pred HHHHH--------HHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 544 YNNII--------RAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF----ARAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 544 ~~~l~--------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
|...| -.-....+.+.+.++|+..++.-+. ...||.-+--+| .+..++..|.+++-..+.. -|..
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~ 437 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCch
Confidence 22211 1123578899999999998885332 556665544444 4678899999999887754 4678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG-LELDVFTYEALLKA 690 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 690 (779)
.+|...|..-.+.++++...+++++.++-+ +-|..+|......=..+|+.+.|..+|.-+++.. +.-....|...|+-
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 889999998899999999999999999876 5677888888888888999999999999988763 23345677777777
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA-----RRG-----------DVWEAADLMQQMK 743 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 743 (779)
-...|.++.|..+++.+++.. ....+|-++..-=. ..| ....|.++|+++.
T Consensus 517 Ei~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 788999999999999998763 55556665544332 233 4667788887764
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.9e-15 Score=144.16 Aligned_cols=437 Identities=15% Similarity=0.105 Sum_probs=303.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh----hhHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT-YSIIVGGFAKMGNAEAADHWFEEAKERHATLNA----IIYGN 406 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 406 (779)
.+...|..-|.....+.+|+..|+-+++...-|+.-. -..+.+.|.+...+.+|+++|+-++..-+..+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3444555667777888999999999988766566443 345778899999999999999988876444333 35566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------CCCHhhH
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF------------SPSIISY 474 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~------------~~~~~~~ 474 (779)
+...+.+.|.++.|+..|+.+.+. .|+..+-..|+-++...|+.++..+.|.+|+..-. .|+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 666788999999999999999886 56777666677788889999999999999986422 2233333
Q ss_pred HHHHH-----HHHHcC--CHHHHHHHHHHHHHCCCCCCHH---HHHH------------------HHHHHHhcCCHHHHH
Q 004006 475 GCLIN-----LYTKIG--KVSKALEVSKVMKSSGIKHNMK---TYSM------------------LINGFLKLKDWANVF 526 (779)
Q Consensus 475 ~~li~-----~~~~~g--~~~~A~~~~~~m~~~~~~~~~~---~~~~------------------ll~~~~~~~~~~~a~ 526 (779)
+..|. -.-+.+ +.++++-.-.+++.--+.|+.. -|+. -..-|.+.|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 32221 111111 1222222222222222333321 0110 123467889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCG--MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
++++-+.+.+-+.-...-+.|...+.- ..++..|.++-+......-. +......-......+|++++|.+.|++.+.
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 999888766433223333333333332 34577777777666543211 222222222234467999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684 (779)
Q Consensus 605 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 684 (779)
..-.-....|| +...+-..|++++|+++|-++... +..+......+...|....+..+|++++.+.... ++.|..++
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 53332222233 334567889999999999876532 2456777888889999999999999999988776 57799999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-h
Q 004006 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACK-C 763 (779)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~-~ 763 (779)
..|...|-+.|+-..|.+..-+--.. ++-+.++..-|..-|....-+++|+.+|++..- +.|+..-|-.++..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 99999999999999999887655443 577888888888888899999999999999864 7999999998887765 5
Q ss_pred cCCcchHHHhHhhh
Q 004006 764 SKSNQRNGRSWSEA 777 (779)
Q Consensus 764 ~g~~~~a~~~~~~m 777 (779)
+|++++|..+|+++
T Consensus 673 sgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDI 686 (840)
T ss_pred cccHHHHHHHHHHH
Confidence 89999999999875
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=5.4e-14 Score=134.81 Aligned_cols=446 Identities=14% Similarity=0.173 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCChHHH-HHHHHHHHHcCCCCCHhHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEA-LSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~l 372 (779)
+.+-+.|+.. ...|.+.++.-+|++|...|...+...-..|+.. |.+..+.--| ++.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3344555554 3568899999999999999888777776666644 3333333322 23344444443 2234444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
+.|.+.+ -+|+-. ..+..++..||.+.|+--..++|.+++++..+.....+..+||.+|.+-.-.-
T Consensus 191 -----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-- 256 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-- 256 (625)
T ss_pred -----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--
Confidence 3444333 222221 12556677777777777777777777777766655666777777765433222
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHH
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK----ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWA-NVFA 527 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~ 527 (779)
..++..+|....+.||..|+|.++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++-. .+..
T Consensus 257 --~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 257 --GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred --cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 15566677766677777777777777777776554 3456666777777777777777777666655442 3344
Q ss_pred HHHHHHHC--C--CC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC---CcccHHHHHHHHHhcCCH
Q 004006 528 VFEDVMRD--G--LK----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER----HRP---TSRTFMPIIHGFARAGEM 592 (779)
Q Consensus 528 ~~~~~~~~--g--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~~~~ 592 (779)
++.++... | ++ -|...|...+..|.+..+.+-|.++...+.... +.+ ....|..+..+.++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44444332 1 11 144556666666667777776666655544321 011 122344555566666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C----------
Q 004006 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG-D---------- 661 (779)
Q Consensus 593 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~---------- 661 (779)
+.....|+.|.-.-+.|+..+...++.+..-.++++-.-+++.+++..|..-+...-..++..+++.. +
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 77777777776555556666666666666666776666666666666553333333333333333222 0
Q ss_pred ----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHH---HHHHHHH
Q 004006 662 ----------TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK-IPRNTFVYN---ILIDGWA 727 (779)
Q Consensus 662 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---~l~~~~~ 727 (779)
.+.....-.++... +......+..+-.+.+.|+.++|+++|.-+...+ --|-....| -+++.-.
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 11111112223333 4455667778888899999999999999885432 122233344 4555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 728 RRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 728 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
+.+....|..+++-|...++..-...-+.+...|.-+
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iN 609 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAIN 609 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcC
Confidence 7788889999999987765432222334444444433
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=7.6e-13 Score=128.70 Aligned_cols=450 Identities=13% Similarity=0.122 Sum_probs=343.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..-...=..+++++.|+.+|++++.-+. .+...|-..+.+-.++..+..|.+++++.+.. ++.-...|.-.+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 34455556666678889999999999998763 37778888999999999999999999999875 33334556666667
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
--..|++.-|.++|++..+- .|+..+|.+.|..-.+.+.++.|..++++.+-- +|++..|-.....-.+.|+...+
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 77889999999999998864 789999999999999999999999999999874 78999999999999999999999
Q ss_pred HHHHHHHHHC-CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH---
Q 004006 456 LIVFERLKEC-GF-SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFAV--- 528 (779)
Q Consensus 456 ~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--- 528 (779)
..+|+...+. |- .-+...+.++...-.++..++.|.-+|+-.+.. ++.+ ...|..+...--+-|+.......
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999998764 21 012344555556566678899999999988875 2223 45566555555555665544432
Q ss_pred -----HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHH-----H---HHhcCCHHH
Q 004006 529 -----FEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS-RTFMPIIH-----G---FARAGEMKR 594 (779)
Q Consensus 529 -----~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~-----~---~~~~~~~~~ 594 (779)
|+.+++.+.. |-.+|-..+..-...|+.+...++|+..+..-+.... ..|...|. + -....+.+.
T Consensus 306 KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4555555443 7788888999999999999999999999876433211 12222111 1 135689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 595 ALEIFDMMRRSGCIPTVHTFNALI----LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 670 (779)
Q Consensus 595 a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 670 (779)
+.++|+..++. +.-...+|.-+= .-..++.++..|.+++...+ |.-|...+|..-|..=.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 222344554332 33346788999999999887 457888999999998899999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 671 KLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI-PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 671 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (779)
+.++.+ +-+..+|......-...|+.+.|..+|+-++.... ......|-..|+-=...|.++.|..+++++++. ..
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~ 538 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQ 538 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cc
Confidence 999997 55888999999888999999999999999887531 223346777787778899999999999999875 23
Q ss_pred CHHHHHHHHH
Q 004006 750 DVHTYTSFIN 759 (779)
Q Consensus 750 d~~~~~~l~~ 759 (779)
...+|-++..
T Consensus 539 h~kvWisFA~ 548 (677)
T KOG1915|consen 539 HVKVWISFAK 548 (677)
T ss_pred cchHHHhHHH
Confidence 3445655544
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.2e-14 Score=137.39 Aligned_cols=119 Identities=20% Similarity=0.221 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+..+|.+||.++++--..+.|.++|.+..+...+.+..+||.+|.+-.-. ...++..+|+...+.||..|+|.++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 66788999999999999999999999988877788999999999765422 23678899998889999999999999
Q ss_pred HHHccCCHHHHH----HHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004006 375 GFAKMGNAEAAD----HWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 375 ~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (779)
+.++.|+|+.|. +++.+|++.|+.|...+|..+|..+++.++.
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 999999888754 4455566666666666666666666655554
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=1.4e-17 Score=143.64 Aligned_cols=84 Identities=26% Similarity=0.485 Sum_probs=79.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+||++++|+++|+++|++||.|.+++|+.| +.||+++|||||+|.+.++|++|++.| ||..|+|+.|+|++
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kGfaFV~F~~~e~A~~Al~~l--ng~~i~Gr~l~V~~ 110 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD-RETGRSRGFGFVNFNDEGAATAAISEM--DGKELNGRHIRVNP 110 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEe
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
+..+...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9776543
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.9e-13 Score=128.52 Aligned_cols=363 Identities=14% Similarity=0.071 Sum_probs=234.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhH
Q 004006 396 HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PSIISY 474 (779)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~ 474 (779)
+...|...++..+.++-+.|....|++.|.+.... .+.....|..|.+... +. ++...+...+.. .....=
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHhcCcccchHHHH
Confidence 34446667777777777888888888888877764 2444445544444332 12 222222221111 011111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 004006 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK--PDVVLYNNIIRAFC 552 (779)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~ 552 (779)
-.+..++....+.++++.-.....+.|+.-+...-+....++....++++|+.+|+++.++++- -|..+|+.++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 2345566667778888887777777777655555555556666778888888888888877432 14566665554322
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 553 GMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIE 632 (779)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 632 (779)
....+ .++..-...-.+--..|+..+.+-|.-.++.++|...|++.++.+.. ....|+.+..-|...++...|++
T Consensus 311 ~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 21111 11111111111124456667777777788888888888888887654 56778878888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004006 633 ILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712 (779)
Q Consensus 633 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (779)
.++..++.+ +-|...|-.|..+|.-.+...-|+-+|++..... +.|...|.+|+++|.+.+++++|++.++.....+
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 888888765 5677788888888888888888888888888775 5577888888888888888888888888887765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH--HHHHHHHhcCCcchHHHhH
Q 004006 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQ----EGVQPDVHTYT--SFINACKCSKSNQRNGRSW 774 (779)
Q Consensus 713 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~~~~--~l~~a~~~~g~~~~a~~~~ 774 (779)
..+...|..|++.|-+.++.++|..+|++-++ .|...|..... -|..-+.+.+++++|..+-
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34557788888888888888888887777654 24443322222 2334456667776666543
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5e-13 Score=129.86 Aligned_cols=384 Identities=12% Similarity=0.050 Sum_probs=275.8
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--
Q 004006 360 EGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPID-- 437 (779)
Q Consensus 360 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 437 (779)
.+..-|.+.+...+..+.+.|....|+..|-.....- +.+-.+|..|.... .+.+.+. .+... ...+..
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~----~l~~~-l~~~~h~M 228 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS----ILVVG-LPSDMHWM 228 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH----HHHhc-CcccchHH
Confidence 3445677777777788889999999999999988752 22444444443332 2222222 22211 121111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 004006 438 IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI--KHNMKTYSMLING 515 (779)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~ 515 (779)
.-..+..++......++++.-.+.+...|+.-+...-+....+.....++++|+.+|+++++++. --|..+|+.++..
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 11234567777778899999999999888876666666667777888999999999999998741 1156777776644
Q ss_pred HHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 004006 516 FLKLKDWA-NVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKR 594 (779)
Q Consensus 516 ~~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 594 (779)
-..+.... -|..++ .+. +-...|+..+.+-|+-.++.++|...|+...+.+.. ....|+.+.+-|...++...
T Consensus 309 ~~~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HhhhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 32221111 111221 111 224467777888888899999999999999998876 67789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 595 ALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 595 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
|...++.+++.+.. |-..|..|..+|.-.+...-|+-+|++..... +.|...|..|..+|.+.++.++|++.|+....
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999998654 88899999999999999999999999998764 56788999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004006 675 EGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA----QKIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ 748 (779)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 748 (779)
.| ..+...+..|.+.|-+.++.++|..++++.++ .|...+ .....-|..-+.+.+++++|..+...... | .
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~ 537 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-E 537 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-C
Confidence 87 45778999999999999999999999888765 232222 12223356667788899888887666553 2 3
Q ss_pred CCHHHHHHHHHHHHh
Q 004006 749 PDVHTYTSFINACKC 763 (779)
Q Consensus 749 pd~~~~~~l~~a~~~ 763 (779)
+...--..|+.-|.+
T Consensus 538 ~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 538 TECEEAKALLREIRK 552 (559)
T ss_pred chHHHHHHHHHHHHH
Confidence 344444445544443
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.2e-13 Score=134.90 Aligned_cols=419 Identities=12% Similarity=0.049 Sum_probs=254.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGF 376 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~ 376 (779)
+-...+-|.++|+|++|++.|.+++.. .|| ..-|.....+|...|+++++.+.-.+.++.+ |+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 445678899999999999999999987 667 6778888889999999999999888888853 44 56677777888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-C--CCCChhhHHHHHHHHHhcCCHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE-G--IDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
-..|++.+|+.=..-..-.+.--|..+ ..++.-.. -..|....++-.+. + +-|+.....+....+...-
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~L----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~--- 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASI-EPMAERVL----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP--- 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchh-HHHHHHHH----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc---
Confidence 888888888642222111111101111 11111100 11122222222221 1 1222222222222221100
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHH--c---CCHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTK--I---GKVSKALEVSKVMKSS---GIKHN---------MKTYSMLINGF 516 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~---~~~~~---------~~~~~~ll~~~ 516 (779)
......+.......+...+.. . ..+.+|.+.+.+-... ....+ ..+...-...+
T Consensus 266 ---------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 266 ---------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ---------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 000000000111111111110 0 1223333332221110 00001 11111111223
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHH
Q 004006 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (779)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 596 (779)
.-.|+...+..-|+..++....++ ..|..+..+|....+.++..+.|.+..+.+.. +..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 446888888888888887654432 33667777888888888888888888888776 6777777777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 676 (779)
.-|++.+....+ +...|--+..+..+.+++++++..|++.+.. ++.-...|+....++...+++++|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 888888886554 5667777777777888888888888888875 24446778888888888888888888888887653
Q ss_pred CC-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 677 LE-----LDV--FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 677 ~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.. .+. .+.-.++..- -.+++..|..++++..+.+ +.....|.+|...-...|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 121 1222222222 2378888888888888876 45556788888888888899999998888654
No 41
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=4.5e-16 Score=136.82 Aligned_cols=84 Identities=25% Similarity=0.454 Sum_probs=80.6
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.++.++|-|.||+.++++++|+++|.+||.|..+.|.+| +.||.+||||||.|.+.++|.+||+.| ||+-++.-.|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylard-K~TG~~kGFAFVtF~sRddA~rAI~~L--nG~gyd~LILr 262 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARD-KETGLSKGFAFVTFESRDDAARAIADL--NGYGYDNLILR 262 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEc-cccCcccceEEEEEecHHHHHHHHHHc--cCcccceEEEE
Confidence 346679999999999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|+|++++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999886
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.7e-13 Score=130.29 Aligned_cols=417 Identities=11% Similarity=0.032 Sum_probs=272.7
Q ss_pred HHhhhc-ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004006 242 VRARWV-AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFE 320 (779)
Q Consensus 242 ~~~~~~-~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (779)
.++... |.+.|++ ++|++.|..+++..|+ .+.-|.....+|...|+|+++++-..
T Consensus 118 lK~~GN~~f~~kkY---------~eAIkyY~~AI~l~p~---------------epiFYsNraAcY~~lgd~~~Vied~T 173 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKY---------DEAIKYYTQAIELCPD---------------EPIFYSNRAACYESLGDWEKVIEDCT 173 (606)
T ss_pred HHhhhhhhhhcccH---------HHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHHhhHHHHHHHHH
Confidence 344444 7778888 9999999999999885 35668888999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH-cC--
Q 004006 321 NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK-EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE-RH-- 396 (779)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-- 396 (779)
+.++.+.. -+..+..-.+++-..|++++|+.-..... -.|+. |..+--.+=+.+-+. |....++-.. .+
T Consensus 174 kALEl~P~-Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p 246 (606)
T KOG0547|consen 174 KALELNPD-YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQ-----AMKKAKEKLKENRPP 246 (606)
T ss_pred HHhhcCcH-HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHH-----HHHHHHHhhcccCCC
Confidence 99987422 34578888889999999999876544432 22232 222222222222221 2222222221 11
Q ss_pred CCCChhhHHHHHHHHHh------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHC---C
Q 004006 397 ATLNAIIYGNIIYAQCQ------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEEKCLIVFERLKEC---G 466 (779)
Q Consensus 397 ~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~---g 466 (779)
..|......+...++.. ....+++-..+.+..+ ..+.. ...+.+|...+.+-... .
T Consensus 247 ~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~ 312 (606)
T KOG0547|consen 247 VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESS 312 (606)
T ss_pred CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhh
Confidence 12233332222222210 0111111111111110 00000 01122222222221110 0
Q ss_pred CCC---C------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 467 FSP---S------IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (779)
Q Consensus 467 ~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (779)
..- | ..+...-...+.-.|+...|..-|+..++....+ ...|-.+..+|+...+-++.+..|....+.+.
T Consensus 313 ~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp 391 (606)
T KOG0547|consen 313 LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDP 391 (606)
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCC
Confidence 000 1 1122222333455788999999999998875333 33377788889999999999999999988766
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004006 538 KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNAL 617 (779)
Q Consensus 538 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 617 (779)
. |..+|..-..++.-.+++++|..-|++.++..+. +...|..+..+..+.+.++++...|++.++.-+. ...+|+..
T Consensus 392 ~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~f 468 (606)
T KOG0547|consen 392 E-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLF 468 (606)
T ss_pred C-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHH
Confidence 5 6778888888888899999999999999998766 6777878888888999999999999999987433 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 618 ILGLVEKRQMEKAIEILDEMTLAGIS-----PNEHTY--TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 618 i~~~~~~~~~~~A~~~~~~m~~~~~~-----~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
...+...+++++|++.|+..++.... .+...+ -.++ .+.-.+++..|..++.+..+... -....|..|...
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~ 546 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDP-KCEQAYETLAQF 546 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHH
Confidence 99999999999999999998865311 111111 1111 12234899999999999999874 367789999999
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 004006 691 CCKSGRMQSALAVTKEMSA 709 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~ 709 (779)
-...|++++|+++|++...
T Consensus 547 ~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998764
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.8e-12 Score=129.45 Aligned_cols=450 Identities=11% Similarity=0.097 Sum_probs=294.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHH----HHHHc-------C--
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVR----KMKEE-------G-- 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-------g-- 361 (779)
++.....++.+|.-.|+++.|..+...-.-. ..|.........++.+..++++|+.++. .+... +
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 5555666788888888898888877665333 3377888888899999999999999887 22110 0
Q ss_pred CCCCH-----------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 362 IEMSL-----------VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 362 ~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
+..|. ..+..-...|....++++|...|.++...+.. +...+..++....- .+.+.|+.+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHML-----TAQEEFELLESL 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhc-----chhHHHHHHhcc
Confidence 11111 11112223344555677777777777665322 22223333322211 111122222211
Q ss_pred CC----CCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004006 431 GI----DAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN 505 (779)
Q Consensus 431 ~~----~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (779)
+. ..+......+.... .+..+. .....-+...-.+..-+........+.+...+++.+..++.+.+.+.. +++
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh 277 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFH 277 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCC
Confidence 10 01111111111111 000000 000000000011223355566667777888899999999999888764 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 004006 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (779)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (779)
...+-.-|..+.+.|+..+-..+=.++++.-+. ...+|-++.--|.-.|+..+|.+.|.+....+.. -...|..+...
T Consensus 278 ~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghs 355 (611)
T KOG1173|consen 278 LPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHS 355 (611)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHH
Confidence 666666667888888888888888888876443 5778888888888889999999999988776554 45678888899
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004006 586 FARAGEMKRALEIFDMMRRS--GCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTG 663 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 663 (779)
|+-.+..|+|+..+..+.+. |+. -...| +.--|.+.++++-|.++|.+..... +.|...++.+.-.....+.+.
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhH
Confidence 99999999999988877664 221 12223 3445778889999999999887653 456667777777777788899
Q ss_pred HHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 664 KAFEYFTKLRNE----G--LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAAD 737 (779)
Q Consensus 664 ~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 737 (779)
+|..+|+..+.. + ..-...+++.|+.+|.+.+.+++|+..+++..... +.+..++.+++-.|...|+++.|++
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH
Confidence 999999887722 1 01134568899999999999999999999998775 7788899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 738 LMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 738 ~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
.|.+.+. +.||..+...++..+..
T Consensus 511 ~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 511 HFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999885 78888777777665443
No 44
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.65 E-value=1.9e-15 Score=156.69 Aligned_cols=82 Identities=26% Similarity=0.416 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+.+|||+|||+.+++++|+++|++||.|.+|+|+.| +.||++||||||+|.+.++|.+|+..| ||..|+||.|+|.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d-~~t~~skG~aFV~F~~~~~A~~Ai~~l--nG~~~~gr~i~V~~ 345 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRD-LTTNQCKGYGFVSMTNYDEAAMAILSL--NGYTLGNRVLQVSF 345 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEc-CCCCCccceEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 348999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.++.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 97764
No 45
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=2.5e-15 Score=137.94 Aligned_cols=83 Identities=25% Similarity=0.438 Sum_probs=76.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|+|.|+|+...|.||+..|.+||.|.+|.||.+ ...|||||||+|++.++|++|.++| ||..+.||+|.|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN---ERGSKGFGFVTmen~~dadRARa~L--Hgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN---ERGSKGFGFVTMENPADADRARAEL--HGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEec---cCCCCccceEEecChhhHHHHHHHh--hcceeeceEEEEec
Confidence 359999999999999999999999999999999975 4567999999999999999999999 99999999999999
Q ss_pred cCCcchhh
Q 004006 231 DDGRRLKN 238 (779)
Q Consensus 231 ~~~~~~~~ 238 (779)
|..|...+
T Consensus 171 ATarV~n~ 178 (376)
T KOG0125|consen 171 ATARVHNK 178 (376)
T ss_pred cchhhccC
Confidence 98774333
No 46
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=2.1e-16 Score=138.57 Aligned_cols=78 Identities=31% Similarity=0.479 Sum_probs=72.8
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+||||+|+|+++.++|++.|++||+|.++.|+.| +.||||||||||+|.+.++|.+|++.. .-.|+||+-.+++|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd-~~t~rskGyGfVTf~d~~aa~rAc~dp---~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITD-KNTGRSKGYGFVTFRDAEAATRACKDP---NPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEec-cCCccccceeeEEeecHHHHHHHhcCC---CCcccccccccchh
Confidence 49999999999999999999999999999999999 999999999999999999999998764 66789999999987
Q ss_pred CC
Q 004006 232 DG 233 (779)
Q Consensus 232 ~~ 233 (779)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=9.7e-14 Score=141.47 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHccCCHHHHHHHH
Q 004006 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTYSIIVGGFAKMGNAEAADHWF 389 (779)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (779)
.++|+.+|+.+... +..+-.+...+.++|...+++++|.++|+.+.+... --+.++|.+++.-+-+ +-++.++
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46666666664443 222334455556666666666666666666655321 1145556555543322 1122222
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004006 390 EEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP 469 (779)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 469 (779)
.+-+-..-.....+|-+++++|.-+++.+.|++.|++.++.+ +....+|+.+.+-+....++|+|...|...+....+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 211111112244555555555555555555555555555543 223444444445555555555555555554433111
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
+...|--|.-.|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.++|+.+|+++...+.+ |...--..+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence 22333334444555555555555555554433 123444444444444555555555555554444333 3333233333
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 550 AFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
.+...+++++|+..|+++...-+. +...+..+...|.+.|+.+.|+.-|..+.+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 444444444444444444443222 333344444444444444444444444443
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.2e-12 Score=137.63 Aligned_cols=226 Identities=14% Similarity=0.088 Sum_probs=105.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHH---HHHh
Q 004006 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNA-LIL---GLVE 623 (779)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~---~~~~ 623 (779)
...+...|+++.|...++.+.+..+. +...+..+...+.+.|+++++.+++..+.+.+.. +...+.. -.. .+..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333 3334444444444555555555555544444322 2221210 001 1111
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChHH
Q 004006 624 KRQMEKAIEILDEMTLAGI---SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT-YEALLKACCKSGRMQS 699 (779)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~ 699 (779)
.+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++.++......... ...........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 1222222233333332211 12445555555566666666666666666665432211110 0111111222345556
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 700 ALAVTKEMSAQKIPRNT--FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 700 A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
+.+.+++..+.. +.|. ....++++.+.+.|++++|.+.|+........||...+.++...+.+.|+.++|.++|++
T Consensus 318 ~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 318 LEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666655543 3344 455666666666666666666666432222456666666666666666666666666654
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=8.4e-14 Score=141.90 Aligned_cols=287 Identities=15% Similarity=0.106 Sum_probs=215.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANVF 526 (779)
Q Consensus 449 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (779)
.-+..+|+..|.++...-.. ...+...+..+|...+++++|.++|+.+++.. ...+..+|.+.+..+-+. -++
T Consensus 332 ~y~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence 34678899999886554222 33566678889999999999999999988752 122667888877665432 222
Q ss_pred HHH-HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 527 AVF-EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (779)
Q Consensus 527 ~~~-~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 605 (779)
..+ +.++... .-...+|-.+.++|...++.+.|++.|++.+..+.. ...+|+.+..-+.....+|+|...|+..+..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 2333322 225788999999999999999999999998887655 6778888888888888999999999988774
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004006 606 GCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYE 685 (779)
Q Consensus 606 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 685 (779)
... +-..|.-|...|.+.++++.|+-.|+++++.+ +-+.+....+...+.+.|+.++|+.+++++.....+ |...--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 322 33344445667888999999999999988765 456677778888888999999999999999887644 555555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (779)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (779)
.-+..+...+++++|+..++++++. ++.+..+|-.++..|.+.|+.+.|+.-|--|.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5667788889999999999998775 36667788889999999999999998888887753
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=5.8e-12 Score=117.04 Aligned_cols=286 Identities=13% Similarity=0.203 Sum_probs=170.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHHcCCH
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYGCLINLYTKIGKV 487 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~ 487 (779)
.++.++|.++|-+|.+.+ +.+..+..+|.+.|.+.|..++|+.+...+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666666643 334455566666666677777777776666654 332 2233456667777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHH
Q 004006 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV----VLYNNIIRAFCGMGNMDRAIHI 563 (779)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 563 (779)
|.|.++|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+..... ..|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888877777643 224556667777787778888888777777766544321 2344444445555667777777
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 564 VKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGIS 643 (779)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 643 (779)
+.+....+.+ ....-..+.+.+...|++..|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 7777666554 444445556666777777777777777776654444455666667777777777777777776655322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHh
Q 004006 644 PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK---SGRMQSALAVTKEMSA 709 (779)
Q Consensus 644 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 709 (779)
++ .-..|...-....-.+.|..++.+-+.. +|+...+..|++.-.. .|+..+...++++|+.
T Consensus 282 ~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 AD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 22 2222333323333345555555444443 4666666666665442 2345555555555553
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.2e-11 Score=120.70 Aligned_cols=466 Identities=11% Similarity=0.017 Sum_probs=324.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+..-+..+++-+..+.++.-|+-+-++....+ .|......+..++.-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 45566777778888888999999999887664 46666677888888899999999887765332 248888899999
Q ss_pred HHHccCCHHHHHHHHHHH----HHcC---------CCCCh-----------hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 375 GFAKMGNAEAADHWFEEA----KERH---------ATLNA-----------IIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~----~~~~---------~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++.+..+|+.|..++... .... ...|. ..+..-..+|....++++|.+.|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 999999999999998832 1100 00011 01111223455566777888887777665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 431 GIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF----SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506 (779)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (779)
+.. ....+..|+.... -.+.+.|+.+..... .-+......+.....-...-++....-....-.++.-+.
T Consensus 171 D~~-c~Ea~~~lvs~~m-----lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 DAK-CFEAFEKLVSAHM-----LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred chh-hHHHHHHHHHHHh-----cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 422 1222222222211 112222333322111 112222222222211111111111111111122344566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 004006 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF 586 (779)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 586 (779)
.......+-+...+++.+..++++.+.+... +....+..-|.++...|+..+-..+=.++.+.-+. ...+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHH
Confidence 6667777788889999999999999988743 34556666677899999998888888888887665 788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 666 (779)
...|+..+|++.|.+....+.. -...|-.+..+|.-.+..+.|+..+....+.- .-...-+--+..-|.+.++++.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999998876443 45688899999999999999999998876542 222222334555678899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ----K--IPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (779)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (779)
++|.+..... +.|+.+++-+.-.....+.+.+|..+|+..+.. + ...-..+++.|+.+|.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999999885 668889999988888899999999999988621 1 11234568999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 741 QMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 741 ~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
+.+.. ..-|..++.++.-.|...|+++.|...|.+
T Consensus 480 ~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 480 KALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99986 455888999999999999999999998864
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.9e-12 Score=117.51 Aligned_cols=300 Identities=14% Similarity=0.146 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---ChhhHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL---NAIIYGNII 408 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 408 (779)
..|-.-++.+. .++.++|.++|-+|.+.... ..++..+|.+.|.+.|.++.|+++...+.++...+ ...+...|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34545555554 36789999999999886432 67778889999999999999999999888763221 123566778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHc
Q 004006 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKI 484 (779)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~ 484 (779)
.-|...|-+|.|+++|..+.+.+ ..-..+...|+..|-+..+|++|+++-+++...+-.+. ...|.-|...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 88899999999999999998865 44566778888999999999999999998887654432 12345556666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004006 485 GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIV 564 (779)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (779)
.+.+.|..++.+..+.+. -....--.+.+.+...|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 788888888888877642 2344444566777888888888888888887755545566777778888888888888888
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 004006 565 KEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE---KRQMEKAIEILDEMTL 639 (779)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~ 639 (779)
..+.+....++ ....+...-....-.+.|...+.+-+.. .|+...+..||..... .|...+.+.++++|+.
T Consensus 273 ~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 273 RRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 87776543322 2333333333333444454444433332 3677777777765443 2345555666666653
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=7.3e-12 Score=117.45 Aligned_cols=423 Identities=12% Similarity=0.140 Sum_probs=257.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (779)
.+..++.+.|++++|+..|..+.... .++...+-.|.-++.-.|.+.+|..+-.+..+ +..--..|+..--+.+
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhC
Confidence 35566777788888888877776643 45566666666666666777777766544432 2333344555555666
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHHH
Q 004006 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM-MDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~ 459 (779)
+-++-..+.+.+... ..--.+|.......-.+++|++++.+....+ +.....|.. .-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 666666655555432 2233455555555667788888888877653 333334433 35567777777777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH
Q 004006 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK-----LKDWANVFAVFEDVMR 534 (779)
Q Consensus 460 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~ 534 (779)
+-.++. +..+....|..+....+.-+-..|.+-.+.+...+-.. |- .+.-+++ -.+-+.|++++-.+++
T Consensus 209 ~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 209 KVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 766654 22244555555555555544444444444444432111 11 1111222 2445677777766655
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh-------cCCHHHHHHHHHHHHHCCC
Q 004006 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR-------AGEMKRALEIFDMMRRSGC 607 (779)
Q Consensus 535 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~ 607 (779)
. -| ..--.|+--|.+.++..+|..+.+++.-. +..-|..-...+.. ...+.-|.+.|+..-+.+.
T Consensus 283 ~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 283 H--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred h--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 3 22 22334566678899999998887765321 11112111111222 2345667777776655554
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004006 608 IPTV-HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686 (779)
Q Consensus 608 ~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 686 (779)
+-|. ..-..+...++-..++++.+.+++.....-.. |...--.+..+++..|++.+|.++|-.+....++.+..-...
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 4332 23345666677777889999998888776433 333444577888899999999999988877766655555566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFV-YNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTS 756 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 756 (779)
|..+|.+.+..+.||.++-++.. +-+..+ +..+.+.|.+.+.+--|.+.|+++.. +.|+...|..
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCC
Confidence 77888899999999888776643 233333 35566778899999889999988876 4666666653
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.60 E-value=1.8e-10 Score=117.19 Aligned_cols=433 Identities=15% Similarity=0.131 Sum_probs=238.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
..++..| ..+++...+++.+.+++.- .-...+.....-.+...|+-++|.+..+.-+..++. +.+.|..++-.+...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 3344444 5567777777777776642 222334444444445567777777777766665433 566677777667677
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
.++++|+++|..+...+.. |...|..+....++.++++-..+....+.+.. ......|..++.++.-.|++..|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888777776544 67777777777777777777777766666653 334455677777777777787777777
Q ss_pred HHHHHCC-CCCCHhhHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 460 ERLKECG-FSPSIISYGCLI------NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 460 ~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
+...+.. ..++...|.... ....+.|..++|++.+..-... +.-....-..-...+.+.++.++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 7776543 234444443332 3344566667776665543322 1112233344456667777888888888777
Q ss_pred HHCCCCCCHHHHHHHH-HHHHhCCCHHHHH-HHHHHHHHcCCCCCcccHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCC
Q 004006 533 MRDGLKPDVVLYNNII-RAFCGMGNMDRAI-HIVKEMQKERHRPTSRTFMPIIHGFARAGEM-KRALEIFDMMRRSGCIP 609 (779)
Q Consensus 533 ~~~g~~~~~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~ 609 (779)
+.. .||..-|+..+ .++.+-.+.-++. .+|....+.-.. ...-..+--......++ +..-.++..+.+.|+.
T Consensus 246 l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p- 320 (700)
T KOG1156|consen 246 LER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP- 320 (700)
T ss_pred Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHhCcchhHHHHHHHHHHHhhcCCC-
Confidence 765 34444444433 3443333333333 444444433111 11111111111111222 2233344455555543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 610 TVHTFNALILGLVEKRQMEKAIEILDEMT----LAG----------ISPNEH--TYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
.++..+...|-.-...+-..++.-.+. ..| -.|... ++..++..|-..|+++.|..+++..+
T Consensus 321 --~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 321 --SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred --chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 233333333322221110111111111 110 023333 33445666777788888888777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004006 674 NEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGV 747 (779)
Q Consensus 674 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 747 (779)
+.- +.-+..|..-.+.+...|++++|..++++..+.+ .+|...-.--+.-..++++.++|.++.....+.|.
T Consensus 399 dHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 652 2122344444567777788888888887777765 34544444556666777777788777777777664
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=7.1e-12 Score=131.89 Aligned_cols=291 Identities=10% Similarity=0.026 Sum_probs=128.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (779)
.|+++.|++.+.+..+.... ....+.....++.+.|+.++|.+.+.+..+..-.....+.......+...|+++.|+..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 44444454444444433211 12222333344444455555555554444321111111222234444555555555555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHHH
Q 004006 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYS-MLINGF---LKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 459 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~~~ 534 (779)
++++.+.... +...+..+...+.+.|++++|.+++..+.+.+.. +...+. .-..++ ...+..++..+.+..+.+
T Consensus 176 l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555544321 3444555555555555555555555555554322 211111 111111 111112222223333322
Q ss_pred CCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 535 DGLK---PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTF-MPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (779)
Q Consensus 535 ~g~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 610 (779)
.... .+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+++.++...+.... |
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 2111 14555555666666666666666666666654332111100 11111112234555555555555544322 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 611 V--HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 611 ~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 44445555666666666666666632222234555555566666666666666666666543
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1e-11 Score=129.87 Aligned_cols=252 Identities=11% Similarity=0.041 Sum_probs=127.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIY--HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
.+.|++++|.+.|.++.+. .++.... ......+...|++++|...++++.+.... +......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 2222111 12234555555555555555555554322 44455555555566666666
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004006 490 ALEVSKVMKSSGIKHNM-------KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (779)
Q Consensus 490 A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 562 (779)
|.+++..+.+.+...+. .+|..++.......+.+...++++.+.+. ...+......+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666555554332111 11222222222333344444444443222 12245555566666666666666666
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI 642 (779)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 642 (779)
++++..+... +. -..++.+....++.+++++..+...+.... |...+..+...|.+.+++++|.+.|+.+.+.
T Consensus 285 ~L~~~l~~~~--~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKRQY--DE--RLVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhcCC--CH--HHHHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 6666655321 22 111222333446666666666666655433 4555556666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 643 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
.|+..++..+..++.+.|+.++|.+++++.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46666666666666666666666666665543
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=5.7e-12 Score=118.18 Aligned_cols=446 Identities=12% Similarity=0.126 Sum_probs=288.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
+.-+....++..|+.+++.-...+-+-...+--++..++.+.|++++|++.|..+.+.. .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44555677889999999887655433233455667788889999999999999888753 56888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
.+|..+-.++.+ +......|.....+.++-++...+...+... ..-..+|.......-.+.+|++++.++
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988777643 4455556666777888888888777766543 223345555656666789999999998
Q ss_pred HHCCCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 463 KECGFSPSIISYGC-LINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV 541 (779)
Q Consensus 463 ~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 541 (779)
+..+ |.....|. +.-+|.+..-++-+.++++--.+. +.-+....|..+....+.=+-..|..-...+..++..-
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 8743 44444444 455678888888888888776664 23344555555544444323333344444444432211
Q ss_pred HHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 542 VLYNNIIRAFCGM-----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNA 616 (779)
Q Consensus 542 ~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 616 (779)
| -.+.-+++. .+-+.|++++--+.+. -......|+--|.+.+++.+|..+..++.- ..|.......
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKg 323 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKG 323 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHH
Confidence 1 122222222 3456777777666553 222334455568899999999988766532 1222333322
Q ss_pred HHHH-H----HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 617 LILG-L----VEKRQMEKAIEILDEMTLAGISPNEH-TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 617 li~~-~----~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
++.+ + .....+.-|...|+-.-+++..-|.. --.++..++.-..++++++.+++.+...-...|...| .+.++
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 2221 1 11223445556665444444333321 2234555666677899999999999887555555555 48899
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCcch
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY-TSFINACKCSKSNQR 769 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-~~l~~a~~~~g~~~~ 769 (779)
++..|++.+|+++|-.+....+..+......|.+.|.+.++.+-|..++-++- -..+..+. ..+.+-|++.+++=-
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776655444444678888999999998887765553 22233333 345567999999877
Q ss_pred HHHhHhhh
Q 004006 770 NGRSWSEA 777 (779)
Q Consensus 770 a~~~~~~m 777 (779)
|.+.|.++
T Consensus 480 aaKAFd~l 487 (557)
T KOG3785|consen 480 AAKAFDEL 487 (557)
T ss_pred HHHhhhHH
Confidence 77777654
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=7.6e-12 Score=130.88 Aligned_cols=283 Identities=12% Similarity=0.059 Sum_probs=146.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 004006 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYS--MLINGFLKLKDWANVF 526 (779)
Q Consensus 449 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 526 (779)
.|++++|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666665554443111 1222323334446666666666666666553 23332222 2245566666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCCHHHHHHHH
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS-------RTFMPIIHGFARAGEMKRALEIF 599 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 599 (779)
..++++.+..+. +...+..+...|.+.|++++|.+++..+.+.....+. ..|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666665443 4555666666666666666666666666665443111 11122222222333334444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 600 DMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL 679 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 679 (779)
+.+.+. ...+......+...+...|+.++|.+++++..+. .++... .++.+....++.+++++.++...+.. +.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 443222 1124555555556666666666666666655542 233311 11222233455666666666655543 34
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
|...+..+...|.+.|++++|.+.|+++.+. .|+...|..|..++.+.|+.++|.+++++..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555556666666666666666666666554 3555555566666666666666666665543
No 59
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=3.2e-14 Score=141.94 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=78.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...++|||+|||+++|+++|+++|+.||.|++|+|++| +.||+++|||||+|.++++|.+|++.| ||..+.+++|+|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~L--nG~~l~gr~i~V 181 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNL--NGITVRNKRLKV 181 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHc--CCCccCCceeee
Confidence 35579999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.++++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998654
No 60
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=4.4e-15 Score=134.55 Aligned_cols=86 Identities=28% Similarity=0.514 Sum_probs=81.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++-++|||+-|+++++|.+|+..|++||.|+.|+||.| +.||+++|||||+|+++.+..+|.+.. +|..|+|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d-~vTgkskGYAFIeye~erdm~~AYK~a--dG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD-KVTGKSKGYAFIEYEHERDMKAAYKDA--DGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee-cccCCccceEEEEeccHHHHHHHHHhc--cCceecCcEEEE
Confidence 45579999999999999999999999999999999999 999999999999999999999999998 999999999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
.+-..+++.
T Consensus 176 DvERgRTvk 184 (335)
T KOG0113|consen 176 DVERGRTVK 184 (335)
T ss_pred Eeccccccc
Confidence 998887765
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.2e-15 Score=116.83 Aligned_cols=87 Identities=23% Similarity=0.468 Sum_probs=80.7
Q ss_pred hhhhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 144 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
..+..+.+++||||||++.++|+.|.++|+++|.|+.|.+-.| +.+....||+||+|-+.++|..|++-+ ||..|+.
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLd-r~kktpCGFCFVeyy~~~dA~~Alryi--sgtrLdd 105 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLD-RFKKTPCGFCFVEYYSRDDAEDALRYI--SGTRLDD 105 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccc-cCCcCccceEEEEEecchhHHHHHHHh--ccCcccc
Confidence 3455678899999999999999999999999999999999999 888999999999999999999999999 9999999
Q ss_pred eEEEEEecCC
Q 004006 224 RVLTVKLDDG 233 (779)
Q Consensus 224 ~~~~v~~~~~ 233 (779)
++|+|.|..+
T Consensus 106 r~ir~D~D~G 115 (153)
T KOG0121|consen 106 RPIRIDWDAG 115 (153)
T ss_pred cceeeecccc
Confidence 9999998643
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=2.4e-10 Score=116.41 Aligned_cols=450 Identities=11% Similarity=0.063 Sum_probs=303.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
....+..+.++.+.|. ...+.....-.+...|+.++|.......++.++. +.+.|+.+.-.+..
T Consensus 24 kkgLK~~~~iL~k~~e---------------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFPE---------------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HhHHHHHHHHHHhCCc---------------cchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 4455555666666665 3444455555566789999999999998887654 77889999999988
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (779)
..+|++|+++|...+..+. -|...|.-+.-.-++.++++-....-.+..+.... ....|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 37888888888888999999888877777765433 678899999999999999999999
Q ss_pred HHHHHHcCC-CCChhhHHHH------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 424 VRDMEEEGI-DAPIDIYHMM------MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 424 ~~~~~~~~~-~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++..+... .++...+... .....+.|..++|++.+...... +......-.+..+.+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 999988652 3444444322 23456788888888887766543 111233345667889999999999999999
Q ss_pred HHHCCCCCCHHHHHHH-HHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 004006 497 MKSSGIKHNMKTYSML-INGFLKLKDWANVF-AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (779)
Q Consensus 497 m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (779)
++..+ ||...|... ..++.+-.+.-+++ .+|....+.-.. ....-..=+.......-.+..-.++..+.+.|+.+
T Consensus 245 Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 245 LLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 99874 565555554 44554344444444 666665543111 11111111111111122333446666777777543
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRR----SG----------CIPTVHTF--NALILGLVEKRQMEKAIEILDEMT 638 (779)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~~~~~~~A~~~~~~m~ 638 (779)
++..+...|-.-...+-..++.-.+.. .| -.|....| ..++..+-+.|+++.|..+++..+
T Consensus 322 ---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 ---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred ---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 444444444333322222222222211 10 13454444 455677889999999999999998
Q ss_pred HCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 004006 639 LAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF 717 (779)
Q Consensus 639 ~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (779)
.+ .|+. ..|..-...+...|++++|..++++..+.. .+|..+-..-+....++++.++|.+++....+.|. +..
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~ 473 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAV 473 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chh
Confidence 76 5654 456666788899999999999999999986 56776666777788899999999999999987763 222
Q ss_pred H--------H--HHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 718 V--------Y--NILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 718 ~--------~--~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
. | .-=+.+|.+.|++.+|++=|..+.
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 1 1 112566888888887777555543
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1e-14 Score=145.77 Aligned_cols=259 Identities=18% Similarity=0.204 Sum_probs=56.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 004006 477 LINLYTKIGKVSKALEVSKVMKSSG-IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMG 555 (779)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 555 (779)
+...+.+.|++++|+++++...... ...+...|..+...+...+++++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3445555555555555553332221 1123333333444444445555555555555443322 23333333333 3444
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 556 NMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG-CIPTVHTFNALILGLVEKRQMEKAIEIL 634 (779)
Q Consensus 556 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~ 634 (779)
++++|.++++...+.. .+...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|+.++
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455544444433322 123333344444444444444444444443221 1123334444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 004006 635 DEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (779)
Q Consensus 635 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (779)
++.++.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..++++..+.+ +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 4444432 1123334444444444444444444444443332 2223334444444444444444444444444332 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 715 NTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
|......+++++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4444444444444444444444444443
No 64
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.3e-14 Score=144.99 Aligned_cols=258 Identities=14% Similarity=0.160 Sum_probs=79.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRDG-LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (779)
+...+.+.|++++|+++++...... ..-|...|..+...+...++++.|+..++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3555566666666666664433322 1224444555555555666666666666666655443 34444455544 4666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 591 EMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYASLGDTGKAFEYF 669 (779)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 669 (779)
++++|.+++....+.. .+...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++++
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665554332 244445555666666666666666666655322 2334555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 670 TKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 670 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (779)
+++++.. +.|....+.++..+...|+.+++.++++...+.. +.|...+..++.+|...|+.++|+.++++..+. -..
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-ccc
Confidence 6666654 3345566666666666666666666666555432 344455566666666666666666666666653 122
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 750 DVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 750 d~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
|..+..++.+++...|+.++|.++.++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555556666666666666666665543
No 65
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3.2e-15 Score=133.31 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=78.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
...+|||.|..+++.++|++.|.+||+|.+++|++| ..|+|+||||||.|.+.++|+.||..| ||.-|++|.|+-.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~M--nGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQM--NGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeec-ccCCcccceeEEeccchHHHHHHHHHh--CCeeeccceeeccc
Confidence 458999999999999999999999999999999999 999999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
|..+.
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 96664
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=1.4e-10 Score=111.75 Aligned_cols=286 Identities=14% Similarity=0.122 Sum_probs=189.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (779)
.|+|..|++...+..+.+.. ....|..-+.+.-+.|+.+.+-+++.+..+.--......+-+..+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57888888887776665433 45556666677777888888888888887763345556666777778888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM-------KTYSMLINGFLKLKDWANVFAVFED 531 (779)
Q Consensus 459 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (779)
.+.+.+.+.. ..........+|.+.|++.....++..|.+.+.-.+. .+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888776543 5667777888888888888888888888887754443 3555555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 532 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
.... .+-+...-..++.-+.++|+.++|.++.++..+....+. ....-.+.+.++...-++..++-.+.... +.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 4332 233455555666667777777777777777766655433 11222345566666666666665554332 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
..+.+|...|.+.+.|.+|...|+..++. .++..+|+.+.+++.+.|+..+|.++.++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66667777777777777777777766554 56777777777777777777777777766653
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=1.6e-14 Score=110.09 Aligned_cols=70 Identities=27% Similarity=0.644 Sum_probs=66.8
Q ss_pred EEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 154 ~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
|||+|||.++|+++|+++|++||.|..+++..+ .+++++|||||+|.+.++|.+|++.+ ||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~--~~~~~~~~a~V~F~~~~~a~~a~~~l--~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN--SSGKSKGYAFVEFESEEDAEKALEEL--NGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE--TTSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc--ccccccceEEEEEcCHHHHHHHHHHc--CCCEECccCcC
Confidence 799999999999999999999999999999985 67888999999999999999999999 99999999986
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.1e-14 Score=127.49 Aligned_cols=87 Identities=24% Similarity=0.439 Sum_probs=82.6
Q ss_pred hhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 146 ~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
.+..++|+|||-.||.+..+.+|.+.|-.||.|.+.++..| +.|..||+||||.|+++.++++||.+| ||..|+-|+
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvD-RATNQSKCFGFVSfDNp~SaQaAIqAM--NGFQIGMKR 356 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQAM--NGFQIGMKR 356 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeeh-hccccccceeeEecCCchhHHHHHHHh--cchhhhhhh
Confidence 34567899999999999999999999999999999999999 999999999999999999999999999 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
++|.+.+++-
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9999988773
No 69
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=2.1e-14 Score=148.94 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=78.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||||||..+|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..|.|+.|+|++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l--~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSL--NGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhc--ccEEECCeeEEEEe
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+++..
T Consensus 80 a~~~~ 84 (352)
T TIGR01661 80 ARPSS 84 (352)
T ss_pred ecccc
Confidence 87653
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=2.8e-14 Score=137.91 Aligned_cols=81 Identities=14% Similarity=0.312 Sum_probs=74.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCH--HHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP--AAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+.+||||||++.+++++|+.+|+.||.|.+|.|++. || ||||||+|.+. .+..+||..| ||..+.||.|+|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE---TG--RGFAFVEMssdddaEeeKAISaL--NGAEWKGR~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT---KG--RSFAYIDFSPSSTNSLTKLFSTY--NGCVWKGGRLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc---cC--CceEEEEecCCcHHHHHHHHHHh--cCCeecCceeEE
Confidence 459999999999999999999999999999999954 67 99999999987 7899999999 999999999999
Q ss_pred EecCCcchhh
Q 004006 229 KLDDGRRLKN 238 (779)
Q Consensus 229 ~~~~~~~~~~ 238 (779)
+.|++.+..|
T Consensus 83 NKAKP~YLeR 92 (759)
T PLN03213 83 EKAKEHYLAR 92 (759)
T ss_pred eeccHHHHHH
Confidence 9998886554
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=1.2e-08 Score=103.94 Aligned_cols=434 Identities=11% Similarity=0.122 Sum_probs=235.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEE-GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.|-..+..+.++|++......|+..+.. -+.....+|...+......|-.+-++.+|++.++. +...-...|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4444444445555555555555544332 11122334444444444555555555555555443 222344444444
Q ss_pred HhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC--HhhHHHHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEG------IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS--PS--IISYGCLINLY 481 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~--~~~~~~li~~~ 481 (779)
++.+++++|.+.+....... .+.+-..|..+.+...++-+.-..+.+ +.+...|+. +| ...|.+|.+.|
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 55555555555554443321 122333344444444433332222211 111111111 12 23455666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHHCCC--
Q 004006 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL----------------------KDWANVFAVFEDVMRDGL-- 537 (779)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------------~~~~~a~~~~~~~~~~g~-- 537 (779)
.+.|.+++|.++|++....- .+..-|..+.++|+.- -+++-.+.-|+.++....
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 66666666666665555431 1222233333333211 122333344444443311
Q ss_pred ---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 538 ---------KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER-H----RPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (779)
Q Consensus 538 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 603 (779)
..++..|..-+.. ..|+..+-...|.++...- + ..-...|..+...|..+|+++.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 1133444443333 3567777788888776541 1 1123457888888999999999999999998
Q ss_pred HCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHhcCCHH
Q 004006 604 RSGCIPT---VHTFNALILGLVEKRQMEKAIEILDEMTLAGIS-----------------PNEHTYTTIMHGYASLGDTG 663 (779)
Q Consensus 604 ~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----------------~~~~~~~~li~~~~~~g~~~ 663 (779)
+....-- ..+|......-.+..+++.|++++++....-.. -+...|...++.-...|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 8755422 346666666677788899999998876532111 12345666677777788899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh-cC--CHHHHHHHH
Q 004006 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT-FVYNILIDGWAR-RG--DVWEAADLM 739 (779)
Q Consensus 664 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~g--~~~~A~~~~ 739 (779)
.-..+|+++++..+. +..+.......+-...-++++.+++++-+..--.|++ ..|+..+..+.+ .| ..+.|..+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999988765 3333333333444555588888888877665334444 367766665543 23 688999999
Q ss_pred HHHHHcCCCCCHH-H-HHHHHHHHHhcCCcchHHHhHhhh
Q 004006 740 QQMKQEGVQPDVH-T-YTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 740 ~~m~~~g~~pd~~-~-~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
++.++ |..|+.. | |.....-=-..|....|+.++++-
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998 5655533 2 222222233468888888888763
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.8e-14 Score=118.81 Aligned_cols=79 Identities=29% Similarity=0.598 Sum_probs=72.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++||||||+..+++.||+.+|..||.+..|-|.+. ..|||||||++..+|..|+..| +|..|.|..|+|++
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn------PPGfAFVEFed~RDA~DAvr~L--DG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN------PPGFAFVEFEDPRDAEDAVRYL--DGKDICGSRIRVEL 81 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec------CCCceEEeccCcccHHHHHhhc--CCccccCceEEEEe
Confidence 469999999999999999999999999999877654 3799999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++.+..+
T Consensus 82 S~G~~r~ 88 (195)
T KOG0107|consen 82 STGRPRG 88 (195)
T ss_pred ecCCccc
Confidence 9877653
No 73
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.7e-15 Score=126.42 Aligned_cols=82 Identities=24% Similarity=0.535 Sum_probs=77.2
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..++.-|||||||++.||.||..+|++||.|.+|.+++| +.||+|+||||..|++..+-.-|+..| ||..|.||.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRD-k~TGKSKGFaFLcYEDQRSTILAVDN~--NGiki~gRtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRD-KKTGKSKGFAFLCYEDQRSTILAVDNL--NGIKILGRTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEec-CCCCcccceEEEEecCccceEEEEecc--CCceecceeEE
Confidence 455668999999999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred EEecC
Q 004006 228 VKLDD 232 (779)
Q Consensus 228 v~~~~ 232 (779)
|....
T Consensus 109 VDHv~ 113 (219)
T KOG0126|consen 109 VDHVS 113 (219)
T ss_pred eeecc
Confidence 98643
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.52 E-value=1.9e-14 Score=122.89 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=76.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
-.+|-|-||.+.|+.++|+.+|++||.|-+|.|.+| +.|+.++|||||-|.+..+|+.|+++| +|..|+|+.|+|++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrd-r~Tr~sRgFaFVrf~~k~daedA~dam--DG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRD-RYTRQSRGFAFVRFHDKRDAEDALDAM--DGAVLDGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccc-cccccccceeEEEeeecchHHHHHHhh--cceeeccceeeehh
Confidence 358999999999999999999999999999999999 999999999999999999999999999 99999999999998
Q ss_pred cCC
Q 004006 231 DDG 233 (779)
Q Consensus 231 ~~~ 233 (779)
|+-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 853
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=6.2e-14 Score=128.81 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=69.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++||||||++.+|+++|+++|+.||.|.+|+|++| + .++|||||+|.++++|..|+. | ||..|.||.|+|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d-~---~~~GfAFVtF~d~eaAe~All-L--nG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSE-N---ERSQIAYVTFKDPQGAETALL-L--SGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-C---CCCCEEEEEeCcHHHHHHHHH-h--cCCeeCCceEEEEe
Confidence 359999999999999999999999999999999988 3 357999999999999999994 7 99999999999998
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
+.
T Consensus 77 a~ 78 (260)
T PLN03120 77 AE 78 (260)
T ss_pred cc
Confidence 74
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=6.4e-09 Score=105.78 Aligned_cols=481 Identities=13% Similarity=0.132 Sum_probs=238.3
Q ss_pred HHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCChHHHHHHHHH
Q 004006 281 WQAVVSAFERIKK---PSRREFGLMVNYYARRGDMHRARQTFENMRAR-GIEPTLHVYTNLIHAYAVGRDMEEALSCVRK 356 (779)
Q Consensus 281 ~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (779)
|..+.+.|++.-. .=+..|-.-+..+..+|+...-+.+|++.+.. -+.-....|...|......+-.+-++.+|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 5555555554321 23456666777778888888888888887764 2222345788888888888888888888888
Q ss_pred HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCChH---HHHHHHHHH
Q 004006 357 MKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH------ATLNAIIYGNIIYAQCQTRNME---RAEALVRDM 427 (779)
Q Consensus 357 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~ 427 (779)
-++. +...-.--+..+++.+++++|.+.+......+ ...+...|..+....+++-+.- ....+++.+
T Consensus 164 YLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 164 YLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 8774 34446677777888888888888777765432 2224445555544444333222 122233333
Q ss_pred HHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc---------------------
Q 004006 428 EEEGIDAP--IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI--------------------- 484 (779)
Q Consensus 428 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------------------- 484 (779)
..+ -+| ...|.+|.+-|.+.|++++|..+|++....- ..+.-|..+.+.|+..
T Consensus 240 i~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 240 IRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred ccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence 222 122 2346666666777777777777666654421 1112222222222211
Q ss_pred ---------------------------------------------CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 004006 485 ---------------------------------------------GKVSKALEVSKVMKSSGIKH------NMKTYSMLI 513 (779)
Q Consensus 485 ---------------------------------------------g~~~~A~~~~~~m~~~~~~~------~~~~~~~ll 513 (779)
|+..+-...|.+..+. +.| -...|..+.
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHH
Confidence 1222222233333221 111 112344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----------------
Q 004006 514 NGFLKLKDWANVFAVFEDVMRDGLKPD---VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR----------------- 573 (779)
Q Consensus 514 ~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------- 573 (779)
..|-..|+.+.|..+|++..+....-- ..+|.....+-.+..+++.|+++++.....-..
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 555566666666666666555422211 233444444444555566666655554332111
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 004006 574 PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE-HTYTTI 652 (779)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~l 652 (779)
-+...|...++.....|-++....+|+++++..+. +....-+...-+-....++++.+++++-+..-..|+. ..|++-
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 01122333444444455666666666666655443 2222222222233444556666666654443323443 234443
Q ss_pred HHHHH-hc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 004006 653 MHGYA-SL--GDTGKAFEYFTKLRNEGLELDVFTYEALLKAC--CKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDG 725 (779)
Q Consensus 653 i~~~~-~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 725 (779)
+.-+. +. ...+.|..+|+++++ |.+|...-+-.|+.+- -+.|....|+.+++++... +.+. ...||.+|.-
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 33322 11 236677777777776 4444433333333222 2345566666666665432 1221 1245554443
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCcchHHHhHh
Q 004006 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYT---SFINACKCSKSNQRNGRSWS 775 (779)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~---~l~~a~~~~g~~~~a~~~~~ 775 (779)
-+..=-...-..+++++++. -||...-. .+.+.=++.|+.+.|+.+|.
T Consensus 632 aae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 632 AAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 33222222334455555442 33433222 23334455677777776664
No 77
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-14 Score=125.32 Aligned_cols=83 Identities=25% Similarity=0.521 Sum_probs=79.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++||||+|..++++.-|...|-+||.|.+|.+..| -.++++||||||+|+..++|.+||..| |+..|.||.|+|++|
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD-yesqkHRgFgFVefe~aEDAaaAiDNM--nesEL~GrtirVN~A 87 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD-YESQKHRGFGFVEFEEAEDAAAAIDNM--NESELFGRTIRVNLA 87 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccc-hhcccccceeEEEeeccchhHHHhhcC--chhhhcceeEEEeec
Confidence 49999999999999999999999999999999999 889999999999999999999999999 999999999999999
Q ss_pred CCcchh
Q 004006 232 DGRRLK 237 (779)
Q Consensus 232 ~~~~~~ 237 (779)
++.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 988643
No 78
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=5.5e-14 Score=147.61 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=76.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...++||||||++.+++++|+++|++||.|.+|+|+.| +.||+++|||||+|.+.++|++|++.| ||..|+||.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~l--nG~~i~GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhc--CCeEEecceeee
Confidence 45579999999999999999999999999999999999 899999999999999999999999999 999999999999
Q ss_pred EecC
Q 004006 229 KLDD 232 (779)
Q Consensus 229 ~~~~ 232 (779)
++..
T Consensus 182 ~rp~ 185 (612)
T TIGR01645 182 GRPS 185 (612)
T ss_pred cccc
Confidence 8643
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=1.6e-11 Score=134.41 Aligned_cols=218 Identities=11% Similarity=0.053 Sum_probs=153.5
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCChHHHHHHHHHHHHCCCCCCH
Q 004006 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYA---------RRGDMHRARQTFENMRARGIEPTL 331 (779)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 331 (779)
...+.|...|.++++.+|. +...|..+..+|. ..|++++|+..++++++.+.. +.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~---------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~ 338 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN---------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NP 338 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CH
Confidence 3447899999999999987 4445555555443 234478899999998887533 66
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
..+..+..++...|++++|...|++.++.+. .+...+..+...|...|++++|+..|+++.+.++. +...+..++.++
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~ 416 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 7777888888888899999999998888753 35777888888888899999999999998887654 333344445556
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 491 (779)
...|++++|++.++++.+...+.+...+..+..+|...|+.++|...+.++.... ..+....+.+...|...| ++|.
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~ 493 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERAL 493 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHH
Confidence 6678888888888887765323344556667777788888888888887765542 113444555555666666 3666
Q ss_pred HHHHHHHH
Q 004006 492 EVSKVMKS 499 (779)
Q Consensus 492 ~~~~~m~~ 499 (779)
..++.+.+
T Consensus 494 ~~l~~ll~ 501 (553)
T PRK12370 494 PTIREFLE 501 (553)
T ss_pred HHHHHHHH
Confidence 66666554
No 80
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=8.5e-14 Score=146.25 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=78.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++||||||+.++++++|+++|++||.|.+++|.+| +.+|++||||||+|++.++|.+|++.| ||..|+|+.|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kAI~am--Ng~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCcCCeEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++.+.
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 98755
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=4.8e-11 Score=125.18 Aligned_cols=458 Identities=13% Similarity=0.127 Sum_probs=266.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 004006 292 KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (779)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (779)
..|++.+|..||.-|+..|+.+.|- +|..|.-+....+...|+.++.+....++.+.+. .|...||..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4689999999999999999999888 9999988877778888999999888888877765 468889999
Q ss_pred HHHHHHccCCHHH---HHHHHHHHHHc----CCCCChhhHHH---------------HHHHHHhcCChHHHHHHHHHHHH
Q 004006 372 IVGGFAKMGNAEA---ADHWFEEAKER----HATLNAIIYGN---------------IIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 372 l~~~~~~~g~~~~---A~~~~~~~~~~----~~~~~~~~~~~---------------l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
|...|...|++.. ..+.++.+... |.. ....|.. .+......|.++.+++++..+.-
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999998654 33322222211 111 1111211 12222223333444443333322
Q ss_pred cCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004006 430 EGIDAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKT 508 (779)
Q Consensus 430 ~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 508 (779)
......... +++-+ ..+-.+++...+...+.+ .++..+|..+++...-.|+.+.|..++..|++.|+..+...
T Consensus 168 sa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 168 SAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred ccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 211111111 12222 222334444444444443 37888888888888888999999999999999888888777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH-----------HHHHHH---------
Q 004006 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH-----------IVKEMQ--------- 568 (779)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~~~--------- 568 (779)
|..|+-+ .++...+..++.-|.+.|+.|+..|+...+-.+.+.|....+.. ++..|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 7666655 77778888888888888888888887766666555443221111 011110
Q ss_pred ----------------HcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHHHHhcCC---
Q 004006 569 ----------------KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG--CI-PTVHTFNALILGLVEKRQ--- 626 (779)
Q Consensus 569 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~li~~~~~~~~--- 626 (779)
-.|.......|...+. ....|.-++.+++-..+..-- .. -++..|..++.-|++.-+
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 0111111222222211 122455555555555443211 11 134445444444443211
Q ss_pred ---HHH---HHHH---------HHHHHHCCCCCCH----------------------------HHHHHHHHHHHhcCCHH
Q 004006 627 ---MEK---AIEI---------LDEMTLAGISPNE----------------------------HTYTTIMHGYASLGDTG 663 (779)
Q Consensus 627 ---~~~---A~~~---------~~~m~~~~~~~~~----------------------------~~~~~li~~~~~~g~~~ 663 (779)
... ++.. +.+.... ..||. ..-+.++..|++.-+..
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 0000000 01111 12234444555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ--KIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 664 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+++..-++....-+ ...|..||+-++...++++|..+.++.... .+..|..-+..+.+.+.+.+...++..++++
T Consensus 477 K~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 55544444433221 146788888888888888888888887542 2344556678888899999999999999998
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 742 MKQEGVQPD--VHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 742 m~~~g~~pd--~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
+.+.-...+ ..+...+++.-.-.|+.+.-.++.+-
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~ 590 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADI 590 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 876422222 45566777887888888777766654
No 82
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=6.9e-14 Score=134.09 Aligned_cols=83 Identities=22% Similarity=0.405 Sum_probs=78.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee-eceEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-HGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~-~~~~~~ 227 (779)
..+|-||||.||.++.|++|.-+|++.|.|-++++++| +.+|.+||||||+|.+.+.|+.||+.| |++.| .||.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~l--nn~Eir~GK~ig 157 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKEL--NNYEIRPGKLLG 157 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeec-ccCCCCcceEEEEeecHHHHHHHHHHh--hCccccCCCEeE
Confidence 45679999999999999999999999999999999999 999999999999999999999999999 99999 799999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|+.+-.+
T Consensus 158 vc~Svan 164 (506)
T KOG0117|consen 158 VCVSVAN 164 (506)
T ss_pred EEEeeec
Confidence 9986443
No 83
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.3e-13 Score=104.50 Aligned_cols=70 Identities=33% Similarity=0.668 Sum_probs=64.8
Q ss_pred EEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 154 ~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
|||+|||+++++++|+++|+.||.|..+++..+ +. |+++|+|||+|.+.++|.+|++.+ +|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~-~~-~~~~~~a~v~f~~~~~a~~al~~~--~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN-KD-GQSRGFAFVEFSSEEDAKRALELL--NGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES-TT-SSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee-ec-cccCCEEEEEeCCHHHHHHHHHHC--CCcEECCEEcC
Confidence 799999999999999999999999999999998 66 899999999999999999999999 99999999985
No 84
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.6e-13 Score=121.42 Aligned_cols=81 Identities=20% Similarity=0.463 Sum_probs=78.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
..|.|..||..+|+++++.+|+..|+|++|++++| +-+|.+-|||||-|.++.+|++|+..+ ||..|..+.|+|++|
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRD-KitGqSLGYGFVNYv~p~DAe~Aintl--NGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTL--NGLRLQNKTIKVSYA 118 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeec-cccccccccceeeecChHHHHHHHhhh--cceeeccceEEEEec
Confidence 38999999999999999999999999999999999 999999999999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
++..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 8874
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.3e-09 Score=108.15 Aligned_cols=446 Identities=12% Similarity=0.089 Sum_probs=248.0
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
+++.|++ +.|...-++++...|+ +...+..-+.++.+.++|++|+.+.+.-...
T Consensus 22 ~~~~~e~---------e~a~k~~~Kil~~~pd---------------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-- 75 (652)
T KOG2376|consen 22 HGKNGEY---------EEAVKTANKILSIVPD---------------DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-- 75 (652)
T ss_pred hccchHH---------HHHHHHHHHHHhcCCC---------------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--
Confidence 7788887 9999999999998876 5666677788888999999998555443221
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CChhhHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LNAIIYGN 406 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 406 (779)
..+..-+-.-+.+..+.+..++|+..++-.-. .+..+...-...+.+.|++++|+.+|+.+.+.+.. .+...-..
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 11111112234445578999999998872221 24557777778888999999999999999776432 11111112
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC--C----H
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTIIGNEEKCLIVFERLKECG-------FSP--S----I 471 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-------~~~--~----~ 471 (779)
++.+-. +... ..+......+ +-..+......+...|++.+|+++++...+.+ -.- + .
T Consensus 152 l~a~~a-------~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 152 LLAVAA-------ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHH-------hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 211111 1111 0122211111 22334444566788999999999998873211 000 0 1
Q ss_pred h-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCH-H-HHHHHHHHHHHCCC-------
Q 004006 472 I-SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY----SMLINGFLKLKDW-A-NVFAVFEDVMRDGL------- 537 (779)
Q Consensus 472 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~-~-~a~~~~~~~~~~g~------- 537 (779)
. +-.-|.-.+-..|+.++|..+|...++.+. +|.... |.|+.+ ....++ + .++..++.......
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 1 112345567778999999999998888763 344222 222222 111111 1 12222222211000
Q ss_pred ---CCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 538 ---KPDVVLYN-NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA--RAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 538 ---~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
....+..| .++.+| .+..+.+.++....... . ....+.+++..+. +...+.++.+++...-+....-..
T Consensus 302 s~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~-p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--S-PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--C-chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH
Confidence 00111111 122222 22333333333222211 1 1233334443332 223466777777776665444334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILD--------EMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE--GLELDV 681 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~ 681 (779)
.+.-.++...+..|+++.|++++. ...+.+..|- +-..++..+.+.++.+.|..++.+.+.. .-....
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 556666777788889998888888 4444443343 3445566667777776777777766542 001111
Q ss_pred H----HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 682 F----TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 682 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
. ++..++..-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2 23333333446788888888888888865 67888888888888876 456666665543
No 86
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=5.7e-10 Score=107.52 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=157.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEV 493 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (779)
.|+|.+|+++..+-.+.+ +-....|..-.++-.+.|+.+.+-.++.+..+..-+++...+-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666554443 2223333333455555555555555555555542233344444455555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 004006 494 SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR 573 (779)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 573 (779)
+.++.+.+ +.+.........+|.+.|++.+...++..+.+.|.--|...-..
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 55555443 22445555555555555555555555555555544322211000
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 574 PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIM 653 (779)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 653 (779)
...+|..+++-....+..+.-...++..... ..-+...-.+++.-+.++|+.++|.++..+..+.+..++. ...
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 1112333333333333333333333333221 1223444555666667777777777777776666544441 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004006 654 HGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVW 733 (779)
Q Consensus 654 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 733 (779)
-.+.+.++.+.-++..++-.... +.+...+..|+..|.+.+.|.+|...|+...+. .++..+|+.+..+|.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 24455666666666666655543 345566777777777777777777777766654 477777777777777777777
Q ss_pred HHHHHHHHHH
Q 004006 734 EAADLMQQMK 743 (779)
Q Consensus 734 ~A~~~~~~m~ 743 (779)
+|.++.++.+
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 7777777655
No 87
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.46 E-value=2.1e-13 Score=136.19 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=76.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v 228 (779)
..+|||+|||..+|+++|+++|++||.|+.++|++| +.+|+++|||||+|.+.++|++|++.| |+..+.| ++|+|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~~~g~~~~l~V 269 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISAL--NNVIPEGGSQPLTV 269 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCccCCCceeEEE
Confidence 458999999999999999999999999999999999 889999999999999999999999999 9999865 79999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++..+.
T Consensus 270 ~~a~~~~ 276 (346)
T TIGR01659 270 RLAEEHG 276 (346)
T ss_pred EECCccc
Confidence 9987654
No 88
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.7e-13 Score=122.40 Aligned_cols=78 Identities=23% Similarity=0.503 Sum_probs=73.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+|+|||||++..+||+++++.|++||.|.+|||.+| +||+||.|++.++|.+||..+ ||..++|..+++
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-------qGYaFVrF~tkEaAahAIv~m--Nntei~G~~VkC 232 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-------QGYAFVRFETKEAAAHAIVQM--NNTEIGGQLVRC 232 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-------cceEEEEecchhhHHHHHHHh--cCceeCceEEEE
Confidence 56789999999999999999999999999999999999 999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.|-+...
T Consensus 233 sWGKe~~ 239 (321)
T KOG0148|consen 233 SWGKEGD 239 (321)
T ss_pred eccccCC
Confidence 9976553
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.4e-13 Score=108.67 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=78.8
Q ss_pred hhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 146 ~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
....++.-|||.++...+|++++.+.|.-||.|+.+++..| +.||-.+||+.|+|++...|++|+.++ ||..|-|..
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLD-RRtGy~KGYaLvEYet~keAq~A~~~~--Ng~~ll~q~ 143 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLD-RRTGYVKGYALVEYETLKEAQAAIDAL--NGAELLGQN 143 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccc-cccccccceeeeehHhHHHHHHHHHhc--cchhhhCCc
Confidence 33455668999999999999999999999999999999999 999999999999999999999999999 999999999
Q ss_pred EEEEecC
Q 004006 226 LTVKLDD 232 (779)
Q Consensus 226 ~~v~~~~ 232 (779)
|.|.|+.
T Consensus 144 v~VDw~F 150 (170)
T KOG0130|consen 144 VSVDWCF 150 (170)
T ss_pred eeEEEEE
Confidence 9999864
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.43 E-value=1.2e-09 Score=116.26 Aligned_cols=488 Identities=11% Similarity=0.021 Sum_probs=292.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
..|...|-+.++.++. =...|..|...|...-+...|.+.|+++.+.+- -+...+..+...|+.
T Consensus 475 ~~al~ali~alrld~~---------------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVS---------------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAE 538 (1238)
T ss_pred HHHHHHHHHHHhcccc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhc
Confidence 4455555555555543 345688888889888899999999999988753 377788889999999
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEG-IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
..+++.|..+.-..-+.. ..-...-|..+.-.|.+.++...|+..|+.....++. |...|..++.+|...|++..|++
T Consensus 539 ~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHH
Confidence 999999988843332221 1112334555666677888999999999998887665 88899999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 423 LVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC------GFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+|.+....+ +.+...-....-+.+..|.+.+|+..+..+... +..--..++..+...+.-.|-..+|.+++++
T Consensus 618 vF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 618 VFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred hhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 998888764 223333334445567889999998888877542 1111233444444444445544444444443
Q ss_pred H-------HHCCCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHH-HHHCC--------------------CCCCHH
Q 004006 497 M-------KSSGIKHNMKTYSMLINGFLKLKDW------ANVFAVFED-VMRDG--------------------LKPDVV 542 (779)
Q Consensus 497 m-------~~~~~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~-~~~~g--------------------~~~~~~ 542 (779)
. ..+....+...|..+-++|.---.. ...+.+|.. ....+ ...+..
T Consensus 697 sie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~ 776 (1238)
T KOG1127|consen 697 SIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY 776 (1238)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc
Confidence 3 3322233344444333332110000 001111111 11111 111234
Q ss_pred HHHHHHHHHHh----C----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 543 LYNNIIRAFCG----M----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (779)
Q Consensus 543 ~~~~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 614 (779)
+|..|+..|.+ . .+...|+..+.+.++..-. +..+|+.|... ...|++.-+...|-+.+..... ...+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhhe
Confidence 45555544433 2 2234667777777665444 66667766544 6667777777777666655433 66778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHc--CCCCCHHHHHHHHHH
Q 004006 615 NALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTK--LRNE--GLELDVFTYEALLKA 690 (779)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~--~~~~~~~~~~~l~~~ 690 (779)
.++...+.++.+++-|...|....... +.|...|-.........|+.-+...+|.. .... |--++..-|-+...-
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 788778888888888888888877654 44556666555555667777777777776 2222 223343334333334
Q ss_pred HHHcCChHHHHHHHH----------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----
Q 004006 691 CCKSGRMQSALAVTK----------EMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQPDVHTYT---- 755 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~---- 755 (779)
....|+.++-....+ +... +.+.+...|.+.+..+-+.+.+++|.++..+++.. ..+-|...|+
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 445555444333332 2222 34666777888888888888888888777765421 0123444444
Q ss_pred HHHHHHHhcCCcchHHHhH
Q 004006 756 SFINACKCSKSNQRNGRSW 774 (779)
Q Consensus 756 ~l~~a~~~~g~~~~a~~~~ 774 (779)
.+...+.-.|+++.|...+
T Consensus 1012 ~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred hhhhhhhhhcchhhHhhhh
Confidence 3334455567776665443
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=5.9e-13 Score=119.98 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=68.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|++| ++.+|||||+|.+++++..|+ .| ||..|.+++|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D----~et~gfAfVtF~d~~aaetAl-lL--nGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS----GEYACTAYVTFKDAYALETAV-LL--SGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC----CCcceEEEEEECCHHHHHHHH-hc--CCCeeCCceEEEE
Confidence 3459999999999999999999999999999999998 555789999999999999998 46 9999999999997
Q ss_pred ec
Q 004006 230 LD 231 (779)
Q Consensus 230 ~~ 231 (779)
..
T Consensus 77 ~~ 78 (243)
T PLN03121 77 RW 78 (243)
T ss_pred eC
Confidence 64
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-09 Score=109.23 Aligned_cols=426 Identities=15% Similarity=0.125 Sum_probs=253.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMG 380 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g 380 (779)
-.++....|+++.|+.+|-+.+..... |.+.|..-..+|+..|+|++|++--.+-++.. |+ ...|+-+..++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcc
Confidence 456777899999999999999988644 88889999999999999999999888887753 45 678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH-----HHHHhcCCHHHH
Q 004006 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM-----DGYTIIGNEEKC 455 (779)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a 455 (779)
++++|+..|.+-++.... |...+..+..++... .. +.+.|. +...|..+. ..+...-.+...
T Consensus 85 ~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~--~~-~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLED--YA-ADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred cHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHH--HH-hhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHH
Confidence 999999999999998655 788888888777211 11 111110 011111111 011111111111
Q ss_pred HHHHHHHHH-CCCCCCHhhHHHHHHHHHHcCCHHHH-H----------------------HHHHHHHH-CCCCCCHHHHH
Q 004006 456 LIVFERLKE-CGFSPSIISYGCLINLYTKIGKVSKA-L----------------------EVSKVMKS-SGIKHNMKTYS 510 (779)
Q Consensus 456 ~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A-~----------------------~~~~~m~~-~~~~~~~~~~~ 510 (779)
++.+.+... .+...+ ...++.+.......+.- . .....+.+ .....-..-..
T Consensus 152 l~~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 152 LEIIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 111100000 000000 00111111111000000 0 00000000 00000112345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------CCcccHHHHHH
Q 004006 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR------PTSRTFMPIIH 584 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~ 584 (779)
.+.++..+..+++.+++.+...++.. -+..-++....+|...|.+.+......+..+.|-. .-...+..+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 56777777788888888888877764 25555666667788888877777666666555432 01112222334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 004006 585 GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASLGDTG 663 (779)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~ 663 (779)
+|.+.++++.++..|.+.......|+. ..+....++++...+...-.+ |+. .....-...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHH
Confidence 566677788888888776654322221 223344455555554443322 221 22233356677888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 664 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
.|+..|.+++... +.|...|....-+|.+.|.+..|+.-.+...+.+ +.....|..-+.++....+|++|++.|++.+
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888876 6688888888888888888888888888877765 5555666666777777788888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHh
Q 004006 744 QEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 744 ~~g~~pd~~~~~~l~~a~~~ 763 (779)
+. .|+..-+..-+.-|..
T Consensus 454 e~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 454 EL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hc--CchhHHHHHHHHHHHH
Confidence 74 4555544444444444
No 93
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=6.3e-11 Score=110.16 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=178.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004006 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (779)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (779)
-+.+.++|.+.|.+.+|.+.|+.-++. .+-..||..|...|.+..+.+.|+.+|.+..+.-+. |+.....+.+++-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence 366778888888888888888887775 356778888888888888888888888888776433 66666677788888
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEV 493 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (779)
.++.++|.+++++..+.. +.++.....+...|...++.+-|+..|.++++.|+. +...|+.+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888888888888764 456666667777788888888888888888888876 777888888888888888888888
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004006 494 SKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 494 ~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 571 (779)
|++....--.++ ..+|..|.......|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..++....+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 887776533333 456666777777778888888888777765444 55677777777778888888888887776654
Q ss_pred CC
Q 004006 572 HR 573 (779)
Q Consensus 572 ~~ 573 (779)
+.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 43
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.2e-09 Score=104.67 Aligned_cols=451 Identities=14% Similarity=0.069 Sum_probs=266.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (779)
+-++.+...|++++|.+...+++..+ .-+...+..-+-++.+.+.|++|+++.+.-... ..+.+-+..-+-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34678889999999999999999875 446777888888889999999999665443221 112222223334445889
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
+.++|+..++-+... +..+...-...+.+.|++++|.++|+.+.+.+.+. +...-..++..- .+...
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~- 161 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV- 161 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-
Confidence 999999999833222 44466666788899999999999999998876332 111111111111 11111
Q ss_pred HHHHHCCCCCCHhhHHH---HHHHHHHcCCHHHHHHHHHHHHHCC------CCCC-H------H-HHHHHHHHHHhcCCH
Q 004006 460 ERLKECGFSPSIISYGC---LINLYTKIGKVSKALEVSKVMKSSG------IKHN-M------K-TYSMLINGFLKLKDW 522 (779)
Q Consensus 460 ~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~------~~~~-~------~-~~~~ll~~~~~~~~~ 522 (779)
..+......+ ..+|.. ....+...|++.+|+++++.....+ -..+ . . .-..|..++...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1122222222 224433 3456778899999999998883211 0111 1 1 112244566778999
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCC-----C-----CcccH-HHHHHHH
Q 004006 523 ANVFAVFEDVMRDGLKPDV----VLYNNIIRAFCGMGNMD-RAIHIVKEMQKERHR-----P-----TSRTF-MPIIHGF 586 (779)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~-----~-----~~~~~-~~l~~~~ 586 (779)
++|..+|..+++.... |. +..|.|+.+-....-++ .++..++........ . ..... +.++..|
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887543 43 33344443322222122 222222222111000 0 00011 1122222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK--RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK 664 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 664 (779)
.+.-+.+.++...... ..| ...+..++..+.+. ..+.++.+++...-+....-.....-.++......|+++.
T Consensus 320 --tnk~~q~r~~~a~lp~--~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPG--MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred --hhhHHHHHHHHHhCCc--cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2233333333322221 122 34455555444332 2467788888777665422234556667777889999999
Q ss_pred HHHHHH--------HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH----HHhcC
Q 004006 665 AFEYFT--------KLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ--KIPRNTFVYNILIDG----WARRG 730 (779)
Q Consensus 665 a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~----~~~~g 730 (779)
|++++. .+.+.+..|- +...+...+.+.++.+.|..++.+.+.. .-........++++- -.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 6666655554 4456677778888777777777766531 001222444444444 35789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 731 DVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 731 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+-++|..+++++.+. ..+|..+...++.+|... +.++|..+-+.+
T Consensus 473 ~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 473 NEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred chHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999985 356888889999998765 677777765544
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=2.4e-13 Score=114.11 Aligned_cols=82 Identities=28% Similarity=0.490 Sum_probs=77.8
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.++..+||||||+..++++.|.++|-+.|+|.+++|.+| +.+..++|||||+|.++++|+-|++.| |+..|-||+|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikil--n~VkLYgrpIr 82 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKIL--NMVKLYGRPIR 82 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchh-hhcccccceeEEEEechhhhHHHHHHH--HHHHhcCceeE
Confidence 345569999999999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred EEecC
Q 004006 228 VKLDD 232 (779)
Q Consensus 228 v~~~~ 232 (779)
|..+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 99876
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.41 E-value=1e-09 Score=116.77 Aligned_cols=362 Identities=11% Similarity=0.078 Sum_probs=203.5
Q ss_pred ccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC
Q 004006 252 GEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIE-PT 330 (779)
Q Consensus 252 g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 330 (779)
|..||... ++-.|...|+++.+.|+. +...+......|++..+++.|..+.-..-+.... --
T Consensus 499 G~iYrd~~--Dm~RA~kCf~KAFeLDat---------------daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 499 GQIYRDSD--DMKRAKKCFDKAFELDAT---------------DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCch---------------hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 44444444 667899999999999886 5566777788888888888888874443332110 01
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...|..+.-.|.+.++...|..-|+...+..+. |...|..++.+|.++|++..|+++|+++...++. +...-+.....
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVM 639 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHH
Confidence 123444455577778888888888888876543 7888888888898889988899888888776443 33344444556
Q ss_pred HHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------HHCCCCCCHhhHHHH
Q 004006 411 QCQTRNMERAEALVRDMEEEG------IDAPIDIYHMMMDGYTIIGNEEKCLIVFERL-------KECGFSPSIISYGCL 477 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~g~~~~~~~~~~l 477 (779)
.|..|.+.+|++.+....... ...-..++..+...+...|-..++..+|++- .......+...|..+
T Consensus 640 ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a 719 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA 719 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 778888888888887776531 1111223333333333344333343333332 222112233334333
Q ss_pred HHHHHHcCCHH------HHHHHHHH-HHHCC--------------------CCCCHHHHHHHHHHHHh--------cCCH
Q 004006 478 INLYTKIGKVS------KALEVSKV-MKSSG--------------------IKHNMKTYSMLINGFLK--------LKDW 522 (779)
Q Consensus 478 i~~~~~~g~~~------~A~~~~~~-m~~~~--------------------~~~~~~~~~~ll~~~~~--------~~~~ 522 (779)
.++|.-.-+.+ .-..++.. ....+ +..+..+|..|+..|.+ ..+.
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 33322211111 00111110 11111 11123444445444433 1233
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMM 602 (779)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 602 (779)
..|+..+.+.++..-. +..+|+.|.-. ...|++.-+...|-+-+..... ...+|..+...+.++.+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhh
Confidence 4677777776654322 56667666554 5556777777766666555444 5566666666777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 603 RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 603 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
....+. +...|--........|+.-+++.+|..
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 665433 444443333333344545555555443
No 97
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2e-08 Score=96.94 Aligned_cols=434 Identities=11% Similarity=0.023 Sum_probs=218.2
Q ss_pred hhhhhhHHHHHHHHHHhcCCccHH---HHHHHH--HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh
Q 004006 259 WHKEREWHRREFRKAVETQPENWQ---AVVSAF--ERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHV 333 (779)
Q Consensus 259 ~~~~~~~a~~~f~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 333 (779)
+.+....|...|..+++....... ....+. +....-+...-...+.+|...|+-+.|+..+....... ...-
T Consensus 55 h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~ 131 (564)
T KOG1174|consen 55 KERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPR 131 (564)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchh
Confidence 344446777777777765411000 000000 00011244556667888999999999988877765542 2233
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 334 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
-|.|+..+.+.| ..++.+..-+.+++. +.-......++..-.+ .++.+- ..|......++.......+.++
T Consensus 132 inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~i~~ll~l~v~--g~e~~S---~~m~~~~~~~~~dwls~wika~ 204 (564)
T KOG1174|consen 132 INLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQVIEALLELGVN--GNEINS---LVMHAATVPDHFDWLSKWIKAL 204 (564)
T ss_pred HHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHHHHHHHHHhhc--chhhhh---hhhhheecCCCccHHHHHHHHH
Confidence 455554444433 223333333333331 1111111111111111 111111 1122222222222223333333
Q ss_pred H--hcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 004006 412 C--QTRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 412 ~--~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 488 (779)
+ -.++-..|..++--+.... +..++.....+.+++...|+.++|...|++.+..+.- ++.......-.+.+.|+++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHh
Confidence 3 3344444444443333322 4556666777777777777777777777776654211 2222333344455666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004006 489 KALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQ 568 (779)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 568 (779)
....+...+.... +.+...|-.-+..+...+++..|+.+-++.++.... +...+-.-..++...|+.++|.-.|+..+
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 6666655554431 123333434444445566777777776666654322 33444444556666777777777777666
Q ss_pred HcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 569 KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI-LGLV-EKRQMEKAIEILDEMTLAGISPNE 646 (779)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~~~~ 646 (779)
...+. +..+|.-|+.+|.-.|.+.+|.-+-+...+. ..-+..+...+. ..|. .-..-++|.+++++.+.. .|+.
T Consensus 362 ~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 362 MLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 65433 5566777777777777777766655544432 111334443332 1111 112235666666665543 3432
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 647 -HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 647 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
..-+.+...|...|..+.++.++++.+.. -+|....+.|.+.+...+.+++|+..|......+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33444555566666666666666666553 3566666666666666666666666666666554
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=1.2e-08 Score=107.67 Aligned_cols=293 Identities=15% Similarity=0.146 Sum_probs=206.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK--- 378 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~--- 378 (779)
.+..+...|++++|++.++.-... +.-...........|.+.|+.++|..+|..+++.+.. |..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 456778999999999999886654 3324456678889999999999999999999998632 44445555555422
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 379 --MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME-RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 379 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
..+.+....+|+++...- |...+...+...+..-..|. .+...+..+...|++ .+++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 235788889999887764 33333333333333323343 455666777777754 4566666667655555555
Q ss_pred HHHHHHHHHC----C----------CCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 004006 456 LIVFERLKEC----G----------FSPSI--ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN-MKTYSMLINGFLK 518 (779)
Q Consensus 456 ~~~~~~~~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 518 (779)
..++..+... + -.|.. .++..+...|...|++++|++++++.++.. |+ ...|..-...|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 5666665432 1 12333 344666788889999999999999998873 44 6778888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCccc--------HHHHHHHHHhcC
Q 004006 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT--------FMPIIHGFARAG 590 (779)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~ 590 (779)
.|++.+|.+.++.....+.. |.+.-+..+..+.+.|+.++|.+++....+.+..+.... ......+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887655 777777788888999999999999998877764322221 133456788889
Q ss_pred CHHHHHHHHHHHHH
Q 004006 591 EMKRALEIFDMMRR 604 (779)
Q Consensus 591 ~~~~a~~~~~~~~~ 604 (779)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 98888887776654
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=97.47 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=70.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.-|||.|||+.+|.++..++|.+||.|..|+|-.. +. .+|-|||.|++..+|++|+..| +|..+.++.+.|.+-
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~-k~---TrGTAFVVYedi~dAk~A~dhl--sg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT-KE---TRGTAFVVYEDIFDAKKACDHL--SGYNVDNRYLVVLYY 92 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCc-cC---cCceEEEEehHhhhHHHHHHHh--cccccCCceEEEEec
Confidence 38999999999999999999999999999999655 44 4999999999999999999999 999999999999886
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
.+-
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 544
No 100
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.40 E-value=8.3e-12 Score=110.87 Aligned_cols=90 Identities=22% Similarity=0.409 Sum_probs=81.3
Q ss_pred CCcccchhhhhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhh
Q 004006 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEF 216 (779)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 216 (779)
.++..+...+...+..+||.|.|..+++++.|...|++|-.....++++| +.||+++|||||.|.+..++.+|++.|
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd-kRTgKSkgygfVSf~~pad~~rAmrem-- 252 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMREM-- 252 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhcccccc-ccccccccceeeeecCHHHHHHHHHhh--
Confidence 34555555555666779999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeceEEEEE
Q 004006 217 DGVEFHGRVLTVK 229 (779)
Q Consensus 217 ~g~~~~~~~~~v~ 229 (779)
||..++.|+|+..
T Consensus 253 ~gkyVgsrpiklR 265 (290)
T KOG0226|consen 253 NGKYVGSRPIKLR 265 (290)
T ss_pred cccccccchhHhh
Confidence 9999999999864
No 101
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=1.4e-08 Score=105.97 Aligned_cols=405 Identities=11% Similarity=0.041 Sum_probs=260.7
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHH
Q 004006 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYH 440 (779)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 440 (779)
+..|...|-.|.-+....|+++.+.+.|++....-.. ....|+.+...|...|.-..|..++++.....-.| +...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5567888888888888899999999999888764322 66788888888888888888888888776653223 333333
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCC
Q 004006 441 MMMDGY-TIIGNEEKCLIVFERLKEC--GF--SPSIISYGCLINLYTKI-----------GKVSKALEVSKVMKSSGIKH 504 (779)
Q Consensus 441 ~l~~~~-~~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~ 504 (779)
+....| ...+..++++.+-.++... +. ......|..+.-+|... -...++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 333333 3566777777776666551 11 11334555555555432 123466777777776542 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 004006 505 NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (779)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 584 (779)
|..+...+.--|+..++.+.|.+...+..+.+..-+...|..|.-.+...+++.+|+.+.+.....-.. |......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhh
Confidence 333333455567778889999998888888766668888888888888889999998888876654221 1111111122
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 585 GFARAGEMKRALEIFDMMRRS---------------------G-------CIPTVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
.-...++.++++.....+... | ......++..+..... -+.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-
Confidence 222344555554443333221 0 0001111211111111 00000000000
Q ss_pred HHHCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 637 MTLAGI--SPN------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 637 m~~~~~--~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
+...-+ .++ ...|......+.+.+..++|...+.+..... ......|...+..+...|.+++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 110001 112 2345566677888889999999998888764 5577778888888889999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHh
Q 004006 709 AQKIPRNTFVYNILIDGWARRGDVWEAAD--LMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWS 775 (779)
Q Consensus 709 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~ 775 (779)
..+ +.+..+..++...+.+.|+..-|.+ ++..+.+.+ ..+...|-.|+..+.+.|+.+.|.+.|.
T Consensus 712 ~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 712 ALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 876 6677789999999999998777777 999998854 2357789999999999999999988775
No 102
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=2e-10 Score=125.68 Aligned_cols=217 Identities=12% Similarity=0.100 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH---------ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA---------KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (779)
++++|+.+|++.++.... +...|..+..+|. ..+++++|+..++++.+.++. +..++..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 345666666666654321 3444444444333 123356666666666665444 55566666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++|+..|++..+.+ +.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 666666666666654 334555666666666666666666666666654322 222222333344556666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004006 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (779)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 569 (779)
+......-+...+..+..+|...|++++|...+.++...... +....+.+...|+..| ++|...++.+.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 554321123344555556666666666666666665443111 2233344444455555 355554444433
No 103
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=9.6e-09 Score=107.14 Aligned_cols=428 Identities=13% Similarity=0.055 Sum_probs=278.3
Q ss_pred HcCChHHHHHHH----HHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 308 RRGDMHRARQTF----ENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 308 ~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
-..+..+++... .++....+..|...|..+.-++...|+++.+.+.|++.+..-+. ..+.|..+...|.-.|.-.
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s 374 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDS 374 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccch
Confidence 334445554433 23333345567888888888888999999999999988764332 6778899999999999989
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHH-HH-hcCChHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc--------
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYA-QC-QTRNMERAEALVRDMEEE--GI--DAPIDIYHMMMDGYTII-------- 449 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-------- 449 (779)
.|..++++.......|+..+-..++.. |. +.+.+++++++-.++... +. ......|..+.-+|...
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 999999887766544544444444433 32 567788887777776652 11 22234455555444321
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 450 ---GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVF 526 (779)
Q Consensus 450 ---g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (779)
....+++..+++..+.+.. |..+.-.+.--|+..++++.|.+..++..+.+-..+...|..|...+...+++.+|+
T Consensus 455 eR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 1234677777777765432 333333344557788899999999998888755668888998888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------------------------CCCCccc
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER----------------------------HRPTSRT 578 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------------~~~~~~~ 578 (779)
.+.+...+.-.. |......-+..-...++.++++.....+...- ..-...+
T Consensus 534 ~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 534 DVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 998877654111 22222222233333555555554443332210 0000111
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 579 FMPIIHGFA-RAGEMKRALEIFDMMRRSG--CIPT------VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTY 649 (779)
Q Consensus 579 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~--~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 649 (779)
+..+..... +......... +...- ..++ ...|......+.+.+..++|...+.+..... .-....|
T Consensus 613 sr~ls~l~a~~~~~~~se~~----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~ 687 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELK----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVY 687 (799)
T ss_pred hHHHHHHHHhhhhhcccccc----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHH
Confidence 111111111 0000000000 01000 0112 2344555667778888899998888887653 3445567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHH
Q 004006 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA--VTKEMSAQKIPRNTFVYNILIDGWA 727 (779)
Q Consensus 650 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (779)
......+...|..++|.+.|......+ +.++.+..++..++.+.|+-.-|.. ++..+.+.+ +.+...|-.++..+.
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFK 765 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 777777888999999999999999876 5578889999999999998666666 999999988 788999999999999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 004006 728 RRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 728 ~~g~~~~A~~~~~~m~~~ 745 (779)
+.|+.+.|.+.|.-..+.
T Consensus 766 ~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQL 783 (799)
T ss_pred HccchHHHHHHHHHHHhh
Confidence 999999999999988764
No 104
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=2.4e-12 Score=123.00 Aligned_cols=82 Identities=27% Similarity=0.451 Sum_probs=72.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~v~ 229 (779)
-++|||.+|...+|.||+++|++||.|.+|.|++| +.||.++|||||.|.+.++|.+|+.+|. |-++| ...+|.|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alh-n~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALH-NQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhh-cccccCCCCcceeec
Confidence 39999999999999999999999999999999999 9999999999999999999999999982 34445 35688888
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+|...+
T Consensus 113 ~Ad~E~ 118 (510)
T KOG0144|consen 113 YADGER 118 (510)
T ss_pred ccchhh
Confidence 886654
No 105
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4e-08 Score=94.85 Aligned_cols=292 Identities=9% Similarity=0.008 Sum_probs=215.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 446 YTIIGNEEKCLIVFERLKEC-GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN 524 (779)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 524 (779)
.+..++...+...+--+... -++-|+.....+.+.+...|+.++|...|++....+. -+..........+...|+++.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhh
Confidence 34455555555555444332 2455788899999999999999999999999887531 133333444455667889998
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 525 VFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 525 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
...+...+.... +-....|-.-+......+++..|+.+-++.++.+.. +...+..-..++...++.++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888888877642 123344544555566788899999999998887554 445555555678889999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCCHH
Q 004006 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIM-HGYA-SLGDTGKAFEYFTKLRNEGLELDVF 682 (779)
Q Consensus 605 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~ 682 (779)
..+- +...|.-|+.+|...|++.+|.-+-+..... +..+..+...+. ..|. ...--++|.+++++.+... +.-..
T Consensus 363 Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~ 439 (564)
T KOG1174|consen 363 LAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTP 439 (564)
T ss_pred cchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHH
Confidence 6533 7889999999999999999998877765543 234555555553 3332 2233689999999888764 33455
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
..+.+...|...|+.+++..++++.... .+|....+.|++.+...+.+++|++.|...++.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6788888999999999999999998774 689999999999999999999999999998873
No 106
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.39 E-value=1e-12 Score=144.58 Aligned_cols=78 Identities=19% Similarity=0.523 Sum_probs=75.3
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+|||||||.++|+++|+++|++||.|.+|+|++| +.|++++|||||+|.+.++|.+|+..+ |+..+.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~l--n~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETM--NFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeeEEeeccc
Confidence 7999999999999999999999999999999999 889999999999999999999999999 9999999999999975
Q ss_pred C
Q 004006 233 G 233 (779)
Q Consensus 233 ~ 233 (779)
.
T Consensus 79 ~ 79 (562)
T TIGR01628 79 R 79 (562)
T ss_pred c
Confidence 3
No 107
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=2.8e-10 Score=111.09 Aligned_cols=199 Identities=15% Similarity=0.122 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...|...|++++|+..++++.+.. ..+...+..+...|...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3456667777777788888888887777653 22456667777777777777777777777776542 255666677777
Q ss_pred HHccCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
+...|++++|++.|+++..... ......+..++.++...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777765321 1133455556666666666666666666666543 2234455555666666666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (779)
|...+++..+. ...+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665554 22234444455555555666666655555443
No 108
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=3.4e-10 Score=110.46 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILG 620 (779)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 620 (779)
...+..+...+...|++++|...++++...... +...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 345555566666666666666666666554322 3344455555555666666666666655554332 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 004006 621 LVEKRQMEKAIEILDEMTLAGI-SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699 (779)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (779)
+...|++++|...+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555666666666655554311 1122334444445555555555555555555443 2233444455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 700 ALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
|..+++++.... +.+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555554431 3334444444455555555555555544443
No 109
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=3.5e-09 Score=111.52 Aligned_cols=294 Identities=16% Similarity=0.136 Sum_probs=184.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ--- 413 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 413 (779)
....+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..++++++. |...|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 345567788999999888776554 3334566677888888889999999999988888654 55555555555422
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004006 414 --TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE-KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 414 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 490 (779)
..+.+...++++++...- |.......+.-.+..-..+. .+..++..+...|++ .+|+.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 224667777788776652 33333333322222222232 344455566666654 3566666666655555555
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 004006 491 LEVSKVMKSS----G----------IKHNM--KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (779)
Q Consensus 491 ~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 554 (779)
.+++...... + -.|+. +++..+...|-..|++++|++++++.++..+. .+..|....+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 5555554322 1 12233 34455666777778888888888877776433 356677777778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HH----HH--HHHHHHHHhcCC
Q 004006 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT--VH----TF--NALILGLVEKRQ 626 (779)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~----~~--~~li~~~~~~~~ 626 (779)
|++.+|.+.++.....+.. |...-+-.+..+.++|++++|.+++....+.+..+. .. .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888887777655 655666666677778888888887777766543221 11 11 333457777777
Q ss_pred HHHHHHHHHHHHH
Q 004006 627 MEKAIEILDEMTL 639 (779)
Q Consensus 627 ~~~A~~~~~~m~~ 639 (779)
+..|++.|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766553
No 110
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=1e-09 Score=115.55 Aligned_cols=437 Identities=14% Similarity=0.118 Sum_probs=254.1
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 317 QTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.++-.+...|+.|+.++|.++|.-|+..|+++.|- +|.-|.-...+-+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999998 8988887777778889999999999999888776
Q ss_pred CCCChhhHHHHHHHHHhcCChHH---HHHHHHHHH----HcCCCCChhhHH--------------HHHHHHHhcCCHHHH
Q 004006 397 ATLNAIIYGNIIYAQCQTRNMER---AEALVRDME----EEGIDAPIDIYH--------------MMMDGYTIIGNEEKC 455 (779)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~~--------------~l~~~~~~~g~~~~a 455 (779)
.+-..+|..|..+|...|++.. .++.+..+. ..|+.....-+- ..+....-.|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999765 222222221 122111111011 111222223333333
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKI-GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (779)
++++..+-... -...+..++.-+... ..+++-..+.+...+ .++..+|.+++..-...|+.+.|..++..|.+
T Consensus 159 lkll~~~Pvsa---~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSA---WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCccc---ccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 33332221110 000111122222222 223444444333333 58999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHH----------------
Q 004006 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI---------------- 598 (779)
Q Consensus 535 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---------------- 598 (779)
.|+..+..-|-.|+-+ .++...++.+++-|...|+.|+..|+..-+..+.++|....+...
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 9998887655555544 888889999999999999999999988766555554432211111
Q ss_pred --------HHH------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHH
Q 004006 599 --------FDM------------MRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG--IS-PNEHTYTTIMHG 655 (779)
Q Consensus 599 --------~~~------------~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~-~~~~~~~~li~~ 655 (779)
++. ..-.|......+|...+. ....|.-++...+...|..-- .. -+...|..++.-
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 000 000112112222222222 122344444555544443211 01 122233322222
Q ss_pred HHhc----------------------CCHHHHHHHHHHHHHc----------------CC-------CCCHHHHHHHHHH
Q 004006 656 YASL----------------------GDTGKAFEYFTKLRNE----------------GL-------ELDVFTYEALLKA 690 (779)
Q Consensus 656 ~~~~----------------------g~~~~a~~~~~~~~~~----------------~~-------~~~~~~~~~l~~~ 690 (779)
|.+. .+..+..+++...+.. -+ .+-...-+.++..
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 2111 1111111111111000 00 0011123444555
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCcc
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE--GVQPDVHTYTSFINACKCSKSNQ 768 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~l~~a~~~~g~~~ 768 (779)
|+..-+..+++..-++....-+. ..|..||+.+..+.+.++|..+.++.... .+..|..-+..+.+...+.+...
T Consensus 469 l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 55555555555544444433222 56788888888888888888888887543 34566777788888888888888
Q ss_pred hHHHhHhhhc
Q 004006 769 RNGRSWSEAK 778 (779)
Q Consensus 769 ~a~~~~~~m~ 778 (779)
.+..++++|+
T Consensus 546 dl~tiL~e~k 555 (1088)
T KOG4318|consen 546 DLSTILYEDK 555 (1088)
T ss_pred HHHHHHhhhh
Confidence 8888877765
No 111
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.4e-12 Score=114.17 Aligned_cols=81 Identities=28% Similarity=0.444 Sum_probs=77.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+.++||-||.+++.|.-|-++|.+||.|..|+|++| ..|.++||||||+..+.+.|..||..| ||+.+++|.+.|.|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD-~ttnkCKGfgFVtMtNYdEAamAi~sL--NGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRD-FTTNKCKGFGFVTMTNYDEAAMAIASL--NGYRLGDRVLQVSF 354 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEec-CCcccccceeEEEecchHHHHHHHHHh--cCccccceEEEEEE
Confidence 459999999999999999999999999999999999 999999999999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.2e-12 Score=109.63 Aligned_cols=81 Identities=30% Similarity=0.589 Sum_probs=72.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+..++|||||||.++.+.+++.+|.+||.|.+|.+... .....||||+|++..+|+.||..- +|+.++|-.|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygR--dGYdydg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGR--DGYDYDGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC----CCCCCeeEEEecCccchhhhhhcc--cccccCcceEEE
Confidence 45679999999999999999999999999999988543 445789999999999999999988 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++...+
T Consensus 78 Efprggr 84 (241)
T KOG0105|consen 78 EFPRGGR 84 (241)
T ss_pred EeccCCC
Confidence 9987664
No 113
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=5.7e-13 Score=123.87 Aligned_cols=77 Identities=27% Similarity=0.500 Sum_probs=74.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
-|++|||.++++..|+.|+..|..||+|+++.+-.| ..||++|||+||+|+-++.|+-|++.| ||..++||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqM--Ng~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccc-cccccccceEEEEEeCcHHHHHHHHHh--ccccccCccccccC
Confidence 379999999999999999999999999999999999 999999999999999999999999999 99999999999984
No 114
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.34 E-value=2.3e-12 Score=135.53 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=72.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~v~ 229 (779)
+++|||||||+++++++|+++|++||.|.+++|++| .+|++||||||+|.+.++|++|++.| ||..+. |+.|.|.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D--~sG~sRGfaFV~F~~~e~A~~Ai~~l--ng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD--FSGQNRGYAFVTFCGKEEAKEAVKLL--NNYEIRPGRLLGVC 133 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC--CCCCccceEEEEeCCHHHHHHHHHHc--CCCeecCCcccccc
Confidence 469999999999999999999999999999999998 67999999999999999999999999 999984 8888887
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 764
No 115
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=4.4e-10 Score=104.64 Aligned_cols=229 Identities=13% Similarity=0.139 Sum_probs=140.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 004006 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (779)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 554 (779)
+-|.++|.+.|.+.+|.+.|+...+. .+-..||-.|-.+|.+.++...|+.+|.+-++. +.-|+.....+.+.+..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777666654 345566666667777777777777777666554 112333334455566667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL 634 (779)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 634 (779)
++.++|.++|+...+.... +.....++...|.-.++.+-|+..|++++..|.. +...|+.+..+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776666443 5555566666666667777777777777777665 6666777766666677777777666
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004006 635 DEMTLAGISPNE--HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (779)
Q Consensus 635 ~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (779)
.+....-..++. ..|-.+.......||+..|.+.|+-.+..+ ..+...+|.|.-.-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666544332332 345555555555666666666666665543 33455555555555566666666666655544
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=2.5e-12 Score=129.51 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=78.0
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+.+||||+|+++++++|..+|+..|.|.+++++-| +.||+++||||++|.+.+++.+|++.| ||..++||+|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D-~~tG~~~G~~f~~~~~~~~~~~a~~~l--Ng~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYD-RETGKPKGFGFCEFTDEETAERAIRNL--NGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccc-ccCCCcCceeeEecCchhhHHHHHHhc--CCcccCCceEEeecc
Confidence 69999999999999999999999999999999999 999999999999999999999999999 999999999999998
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
..+.
T Consensus 96 ~~~~ 99 (435)
T KOG0108|consen 96 SNRK 99 (435)
T ss_pred cccc
Confidence 6553
No 117
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=6.9e-12 Score=96.28 Aligned_cols=72 Identities=36% Similarity=0.684 Sum_probs=67.5
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+|||+|||..+++++|+++|++||.|..+++..+ + +.++|+|||+|.+.+.|++|+..+ +|..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~-~--~~~~~~~~v~f~~~~~a~~a~~~~--~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD-T--GKSKGFAFVEFESEEDAEKAIEAL--NGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC-C--CCCCceEEEEeCCHHHHHHHHHHh--CCcEECCEEEeeC
Confidence 5899999999999999999999999999999987 3 788999999999999999999999 9999999999873
No 118
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.33 E-value=4e-12 Score=139.97 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=79.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+++|||+||+.++|+++|+++|++||.|.+++|+.| .+|+++|||||+|.+.++|.+|+..+ ||..++|++|.|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d--~~g~~~g~gfV~f~~~~~A~~A~~~~--~g~~~~gk~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD--EKGVSRGFGFVCFSNPEEANRAVTEM--HGRMLGGKPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC--CCCCcCCeEEEEeCCHHHHHHHHHHh--cCCeeCCceeEE
Confidence 45668999999999999999999999999999999997 67999999999999999999999999 999999999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
.++..+..+
T Consensus 359 ~~a~~k~~~ 367 (562)
T TIGR01628 359 ALAQRKEQR 367 (562)
T ss_pred EeccCcHHH
Confidence 999776543
No 119
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.31 E-value=1.5e-11 Score=134.57 Aligned_cols=82 Identities=26% Similarity=0.467 Sum_probs=77.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
...+|||||||..+|+++|+++|+.||.|..+.|+.| ..+|+++|||||+|.+.++|..|+..| ||..|+|+.|+|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l--~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAAL--NGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3459999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++...
T Consensus 371 ~a~~~ 375 (509)
T TIGR01642 371 RACVG 375 (509)
T ss_pred ECccC
Confidence 98544
No 120
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=9.2e-12 Score=95.30 Aligned_cols=71 Identities=37% Similarity=0.667 Sum_probs=66.9
Q ss_pred eccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 156 VGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 156 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
|+|||..+++++|+++|++||.|..+.+..+ +.+++++|||||+|.+.++|.+|+..+ +|..++|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~-~~~~~~~~~a~v~f~~~~~a~~a~~~~--~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRD-KDTGKSKGFAFVEFESEEDAEKALEAL--NGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeC-CCCCCCCceEEEEeCCHHHHHHHHHHc--CCCeeCCcEEEeC
Confidence 6899999999999999999999999999988 668999999999999999999999999 9999999999874
No 121
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1e-11 Score=122.44 Aligned_cols=93 Identities=27% Similarity=0.423 Sum_probs=81.1
Q ss_pred hccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh----hhCCceee
Q 004006 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV----EFDGVEFH 222 (779)
Q Consensus 147 ~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~----~~~g~~~~ 222 (779)
....+.+|||.|||+++|+++|.+.|++||.|.++.|+.+ +.||+++|+|||.|.+...++.||.+. +.-+..|+
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 3445579999999999999999999999999999999999 999999999999999999999999875 22337789
Q ss_pred ceEEEEEecCCcchhhHH
Q 004006 223 GRVLTVKLDDGRRLKNKA 240 (779)
Q Consensus 223 ~~~~~v~~~~~~~~~~~~ 240 (779)
||.++|..+-.|....++
T Consensus 367 GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 367 GRLLKVTLAVTRKEAADM 384 (678)
T ss_pred ccEEeeeeccchHHHHHH
Confidence 999999998777544443
No 122
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.30 E-value=7.6e-12 Score=134.62 Aligned_cols=81 Identities=28% Similarity=0.521 Sum_probs=77.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||+|||..+|+++|+++|++||.|..|+++.| ..+|+++|||||+|.+.++|.+|+..| ||..|.|++|+|.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~~A~~~l--~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD-PETGRSKGFGFIQFHDAEEAKEALEVM--NGFELAGRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhc--CCcEECCEEEEEEE
Confidence 469999999999999999999999999999999999 888999999999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
+...
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8644
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.3e-11 Score=92.60 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=56.1
Q ss_pred hHHHHHHHh----ccCCeeEEE-EecCCCCC--CCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 165 KHLVMEFFR----QFGPIKNVI-LIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 165 ~~~l~~~f~----~~g~i~~~~-~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+++|+++|+ +||.|.++. |+.+ +.+ |+++|||||+|.+.++|.+|+..| ||..+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~-~~~~~~~~rG~~fV~f~~~~dA~~A~~~l--~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYID-NVGYENHKRGNVYITFERSEDAARAIVDL--NGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeC-CCCCCCCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEeC
Confidence 578889998 999999995 7777 555 999999999999999999999999 9999999999873
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=3.9e-09 Score=97.20 Aligned_cols=416 Identities=13% Similarity=0.070 Sum_probs=214.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY-SIIVGGFA 377 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~ 377 (779)
+.+.+..+.+..++.+|++++..-.++.. .+......+..+|....++..|.++|+.+... .|...-| ..-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 45566666777778888888877777632 26666777777777778888888888877664 2333333 23345556
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (779)
+.+.+.+|+++...|.... ..-..+...-..+....+++..+..+++++...| +..+.+.......+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7777778887777765431 0011111111222345566666666666655332 34444555555667777777777
Q ss_pred HHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 458 VFERLKEC-GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKT----YSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 458 ~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
-|....+. |+. ....|+..+ +..+.|+++.|++...+++++|++-.... -.-.+++- ..|+ -+.+....
T Consensus 166 kFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~Sa 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQSA 239 (459)
T ss_pred HHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHHH
Confidence 77776654 444 334554433 44566777777777777777664321110 00000000 0000 00000000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE-RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 533 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
-...+|.-...+.+.|+++.|.+.+-+|.-. ....|..|...+.-. ...+++.+..+-+.-+...++- -.
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ 310 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PP 310 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-Ch
Confidence 0123444455567788888888887777533 234456665544321 2234455555555555555443 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGI-SPNEHTYTTIMHGYAS-LGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 689 (779)
.||..++..||++.-++-|-+++.+-...-. ..+...|+ |++++.- .-..+++++-+..+...- ....-...+.
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~ 386 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQ 386 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6777777788888888888777764322111 11222232 3333322 233455554444432210 0000000111
Q ss_pred HHH-HcCC----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 690 ACC-KSGR----MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 690 ~~~-~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.-. +..+ +..+.+-+++..+. -..+.-+..+.|++..++..+.++|+.-.+
T Consensus 387 vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 387 VQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 111 1111 11111122222211 112334456677888999999999988776
No 125
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.27 E-value=5.7e-12 Score=105.99 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=77.8
Q ss_pred hhccccceEEeccCCCcCChHHHHHHHhccCCeeEE-EEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 146 ~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
+..+.+.++|||||.+.+++..|...|+.||.+... +|++| ..||.++|||||.|++.+.+.+|+..+ ||..++.+
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~--ngq~l~nr 167 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSM--NGQYLCNR 167 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHh--ccchhcCC
Confidence 334555799999999999999999999999998754 78888 899999999999999999999999999 99999999
Q ss_pred EEEEEecCCc
Q 004006 225 VLTVKLDDGR 234 (779)
Q Consensus 225 ~~~v~~~~~~ 234 (779)
+|+|+++..+
T Consensus 168 ~itv~ya~k~ 177 (203)
T KOG0131|consen 168 PITVSYAFKK 177 (203)
T ss_pred ceEEEEEEec
Confidence 9999998544
No 126
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=2.5e-09 Score=111.04 Aligned_cols=237 Identities=17% Similarity=0.170 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--C
Q 004006 507 KTYSMLINGFLKLKDWANVFAVFEDVMRD-----GLK-PDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKE-----R--H 572 (779)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~ 572 (779)
.+...|...|...|+++.|+.++++.++. |.. +... ..+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666655443 211 1221 2233555666777777777777766442 1 1
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 004006 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS-----GCI-PT-VHTFNALILGLVEKRQMEKAIEILDEMTLA---GI 642 (779)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~ 642 (779)
.--..++..|..+|.+.|++++|...++.+.+. +.. +. ...++.++..|...+++++|..++++..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112234555666777777777777776655431 111 12 234566677788888999999888865431 11
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--
Q 004006 643 SP----NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG----L---ELDVFTYEALLKACCKSGRMQSALAVTKEMSA-- 709 (779)
Q Consensus 643 ~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 709 (779)
.. -..+++.|...|...|++++|.+++++++... . .-....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 23578899999999999999999999987541 1 12245678888899999999988888886643
Q ss_pred --CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 710 --QK--IPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 710 --~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
.| .+....+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 22334578899999999999999999988876
No 127
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=6.6e-09 Score=92.77 Aligned_cols=199 Identities=15% Similarity=0.038 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
+..-|.-.|.+.|++..|.+.+++.++.+. .+..+|..+...|.+.|+.+.|.+-|++.+..... +-.+.|.-...+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 345578899999999999999999999853 35678999999999999999999999999987533 7889999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHAT-LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (779)
..|++++|...|+++...-.. .-..+|.+++.+..+.|+++.|.+.|++..+.+ +........+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999886422 245689999999999999999999999999875 344566778889999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 457 IVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 457 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
..+++....+. .+..+.-..|.+..+.|+.+.+.++=.++...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999988765 68888888889999999999888877776654
No 128
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1.3e-09 Score=113.07 Aligned_cols=236 Identities=14% Similarity=0.177 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C
Q 004006 473 SYGCLINLYTKIGKVSKALEVSKVMKSS-----GI-KHNMK-TYSMLINGFLKLKDWANVFAVFEDVMRD-----GLK-P 539 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~-~ 539 (779)
+...+...|...|+++.|..+++...+. |. .+... ..+.+...|...+++++|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444566666666666666666555432 10 11111 2233556667777777777777776542 221 1
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----C-CCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 004006 540 -DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER-----H-RPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRS-----G 606 (779)
Q Consensus 540 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 606 (779)
-..+++.|..+|++.|++++|..+++...+.- . .+. ...++.++..|...+++++|..+++...+. |
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 13456666777788888777776666543321 1 111 122455666788888999998888766542 2
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 004006 607 CI--PTVHTFNALILGLVEKRQMEKAIEILDEMTLAG-------ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE-- 675 (779)
Q Consensus 607 ~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-- 675 (779)
.. --..+++.|...|...|++++|.+++++++... ..-....++.|...|.+.+++++|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 124578899999999999999999999876431 1122456788889999999999998888876543
Q ss_pred --CC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 676 --GL--ELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 676 --~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
|. +....+|..|...|...|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 2345689999999999999999999988776
No 129
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.9e-08 Score=99.56 Aligned_cols=420 Identities=14% Similarity=0.074 Sum_probs=257.3
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
....|++ ++|+..|-+++..+|. |...|..-..+|+..|+|++|++=-.+-++...
T Consensus 12 a~s~~d~---------~~ai~~~t~ai~l~p~---------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p 67 (539)
T KOG0548|consen 12 AFSSGDF---------ETAIRLFTEAIMLSPT---------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNP 67 (539)
T ss_pred hcccccH---------HHHHHHHHHHHccCCC---------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3456777 9999999999999986 556677788999999999999988877777632
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
. -...|+....++.-.|++++|+..|.+-++... -+...++-+..++.. +.. +.+.|. +...|..+
T Consensus 68 ~-w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~--~~~-~~~~~~---------~p~~~~~l 133 (539)
T KOG0548|consen 68 D-WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLE--DYA-ADQLFT---------KPYFHEKL 133 (539)
T ss_pred c-hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhH--HHH-hhhhcc---------CcHHHHHh
Confidence 2 346899999999999999999999999988642 256667777777611 111 111111 12222222
Q ss_pred HHH-----HHhcCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHH-----------------------HH
Q 004006 408 IYA-----QCQTRNMERAEALVRDMEEEGIDAPIDI---YHMMMDGYTIIGNEEK-----------------------CL 456 (779)
Q Consensus 408 ~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~-----------------------a~ 456 (779)
..- +...-.+...++.+ ..+ +.+... .-.++.+.......+. ..
T Consensus 134 ~~~p~t~~~~~~~~~~~~l~~~----~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (539)
T KOG0548|consen 134 ANLPLTNYSLSDPAYVKILEII----QKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGF 208 (539)
T ss_pred hcChhhhhhhccHHHHHHHHHh----hcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCC
Confidence 111 11111111111111 100 000000 0011111110000000 00
Q ss_pred HHHHHHHH-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 457 IVFERLKE-CGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 457 ~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
....++.+ ....--..-...+.+...+..++..|++-+....... -+...++....+|...|.+.+.....+...+.
T Consensus 209 ~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 209 PIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred CccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00000000 0000011224457777888888999999998888765 46677778888899999999988888887776
Q ss_pred CCCCCHHHHHH-------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 536 GLKPDVVLYNN-------IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI 608 (779)
Q Consensus 536 g~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 608 (779)
|.. ...-|+. +..+|.+.++++.++..|.+.......|+ ...+....++++.......-.+..
T Consensus 287 gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe 356 (539)
T KOG0548|consen 287 GRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPE 356 (539)
T ss_pred hHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChh
Confidence 543 2223333 33456667788899999988665433322 233445566666665555443332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004006 609 PTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (779)
Q Consensus 609 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 688 (779)
. ..-...-.+.+++.|++..|+..|.+++..+ +-|...|....-+|.++|.+..|+.-.+..++.. +.....|.-=+
T Consensus 357 ~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg 433 (539)
T KOG0548|consen 357 K-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKG 433 (539)
T ss_pred H-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 2 2222233677888999999999999998876 6677889999999999999999998888888874 33444555556
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
.++....++++|++.|++..+.+ +-+......+.+++
T Consensus 434 ~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 66666778999999999988876 33333334333333
No 130
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=7.4e-09 Score=95.37 Aligned_cols=394 Identities=12% Similarity=0.042 Sum_probs=233.9
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 004006 288 FERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTN-LIHAYAVGRDMEEALSCVRKMKEEGIEMSL 366 (779)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 366 (779)
+.+....+......|..+|....++..|-.+|+.+... .|...-|.. -...+.+.+.+..|+.+...|... ++.
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L 110 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PAL 110 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHH
Confidence 33334447888899999999999999999999999876 444444432 235566889999999999888653 122
Q ss_pred hH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 367 VT--YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (779)
Q Consensus 367 ~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (779)
.. ...-.......+++..+..+.+..... -+..+.....-...+.|++++|.+-|....+-+---....|+. .-
T Consensus 111 ~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYni-AL 186 (459)
T KOG4340|consen 111 HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNL-AL 186 (459)
T ss_pred HHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHH-HH
Confidence 22 222222334678888888888776532 2666677777777899999999999999988653334555654 44
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004006 445 GYTIIGNEEKCLIVFERLKECGFSPSII----SYGCLINLYTKIGKV-SKALEVSKVMKSSGIKHNMKTYSMLINGFLKL 519 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 519 (779)
+..+.|+++.|++...+++++|++-... ...-.+++- ..|+. ..+... -...+|.-...+.+.
T Consensus 187 aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sa-----------l~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 187 AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSA-----------LVEAFNLKAAIEYQL 254 (459)
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHHHH-----------HHHHhhhhhhhhhhc
Confidence 5667899999999999999998752211 111111110 01111 111111 123445555567788
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 004006 520 KDWANVFAVFEDVMRD-GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI 598 (779)
Q Consensus 520 ~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 598 (779)
++++.|.+.+-+|.-. ..+.|.+|...+.-.- -.+++.+..+-+.-+....+. ...||..++-.||++.-++.|-++
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHH
Confidence 9999999888887533 3445777776654332 234455555555555666553 567888888899999999998888
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 004006 599 FDMMRRSGCI-PTVHTFNALILGLVE-KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD---TGKAFEYFTKLR 673 (779)
Q Consensus 599 ~~~~~~~~~~-~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~ 673 (779)
+.+-...-.. .+...|+ |+.++.- .-..++|++-++.+...- .-.......-+.--....+ ..++++-+++.+
T Consensus 333 LAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~L 410 (459)
T KOG4340|consen 333 LAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETL 410 (459)
T ss_pred HhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7654322111 2334444 3344443 345667766655443210 0000011111111111111 122223333333
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004006 674 NEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (779)
Q Consensus 674 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (779)
+. -.-+...-.+.|.+..++..++++|..-.+.
T Consensus 411 E~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 411 EK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22 1113334455677788899999999887764
No 131
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.25 E-value=2e-11 Score=131.45 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=75.3
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
....+|||+|||..+++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|+. + +|..+.|++|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l--~g~~~~g~~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-L--TGQMLLGRPIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-h--CCCEECCeeeEE
Confidence 34569999999999999999999999999999999999 8899999999999999999999996 6 999999999999
Q ss_pred EecCC
Q 004006 229 KLDDG 233 (779)
Q Consensus 229 ~~~~~ 233 (779)
..+..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 87643
No 132
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.24 E-value=2.5e-11 Score=129.71 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=71.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
++.|||||||+++++++|+++|++||.|.+|+++++ +|||||+|++.++|.+|++.+..|+..++|++|+|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 459999999999999999999999999999999976 7999999999999999998754488999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+..+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 97653
No 133
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.7e-07 Score=97.98 Aligned_cols=240 Identities=17% Similarity=0.150 Sum_probs=141.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHH----------HHHcCC---------
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRK----------MKEEGI--------- 362 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----------m~~~g~--------- 362 (779)
|=..|-..|.|++|.++-+.--+-. -..+|.....-+-..+|++.|++.|++ |+....
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 3345556777887777665433222 224566666666666777777766654 222111
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 363 EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442 (779)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (779)
..|...|..-...+-..|+.+.|+.+|..+.. |.+++++.|-.|+.++|.++-++ ..|..+.+.|
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhl 973 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHL 973 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHH
Confidence 12455666666667778889999988887653 77888999999999999888665 3366778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CC--CCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 443 MDGYTIIGNEEKCLIVFERLKECG--FS--PSIISYGCLINLYTKIGK--VSKALEVSKVMKSSGIKHNMKTYSMLINGF 516 (779)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 516 (779)
.+.|...|++.+|...|-+..... ++ .....-..|.+.+...|. .-.|.++|++.- . .+...+..|
T Consensus 974 aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLY 1045 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLY 1045 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHH
Confidence 999999999999999998765320 00 000000112222222222 222333343221 1 122234456
Q ss_pred HhcCCHHHHHHHHH--------HHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004006 517 LKLKDWANVFAVFE--------DVMRDG--LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (779)
Q Consensus 517 ~~~~~~~~a~~~~~--------~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (779)
-+.|.+.+|+++-= +++..+ ...|....+.....++...++++|..++...
T Consensus 1046 HkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1046 HKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67777777665421 122222 2335566666666677777777777666544
No 134
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.23 E-value=5.2e-11 Score=85.05 Aligned_cols=56 Identities=29% Similarity=0.635 Sum_probs=51.0
Q ss_pred HHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 168 VMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 168 l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
|.++|++||.|.++.+..+ + +|+|||+|.+.++|..|++.| ||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~-~-----~~~a~V~f~~~~~A~~a~~~l--~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK-K-----RGFAFVEFASVEDAQKAIEQL--NGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT-S-----TTEEEEEESSHHHHHHHHHHH--TTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEEC
Confidence 6789999999999999876 1 599999999999999999999 999999999999985
No 135
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=2.6e-07 Score=87.16 Aligned_cols=317 Identities=11% Similarity=0.028 Sum_probs=165.5
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI-YHMMMD 444 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~ 444 (779)
+.-..-+...+.-.|++.+|+.-|..+.+-++. +..+++.-...|...|+-.-|+.-|.+.++. +||... -..-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 334445556666667777777777777665333 4445555566677777777777766666664 344322 122234
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN 524 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 524 (779)
.+.+.|.++.|..-|+.+++.... .. ....++.+.-..++-..+ ...+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s--~~---~~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS--NG---LVLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC--cc---hhHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhh
Confidence 566777777777777777664321 10 111111111111111111 112222334455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 525 VFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 525 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
|+.....+++..+ .|...+..-..+|...|+...|+.-++...+.... +...+--+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555555322 24445555555555555555555555554444333 333333444455555555555555555555
Q ss_pred CCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Q 004006 605 SGCIPTVHTFNAL-------------ILGLVEKRQMEKAIEILDEMTLAGISPNEH---TYTTIMHGYASLGDTGKAFEY 668 (779)
Q Consensus 605 ~~~~~~~~~~~~l-------------i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~ 668 (779)
.+ ||...+... +......++|.++++..+...+........ .+..+-.++...+++.+|+..
T Consensus 252 ld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 LD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred cC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 32 222211100 112234556666666666655543221122 233344555666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 669 FTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
..++++.. +.|+.++.--..+|.....+++|+.-+++..+.+
T Consensus 330 C~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 330 CKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77777764 4457777777777777777777777777776654
No 136
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.21 E-value=1.8e-11 Score=110.96 Aligned_cols=71 Identities=27% Similarity=0.594 Sum_probs=68.2
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+|||||||..+++.+|+.+|++||.|.+|+|++ .||||-.++...+..||+.| ||++|+|..|+|+-++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK---------NYgFVHiEdktaaedairNL--hgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK---------NYGFVHIEDKTAAEDAIRNL--HGYTLHGVNINVEASK 72 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec---------ccceEEeecccccHHHHhhc--ccceecceEEEEEecc
Confidence 899999999999999999999999999999995 49999999999999999999 9999999999999988
Q ss_pred Cc
Q 004006 233 GR 234 (779)
Q Consensus 233 ~~ 234 (779)
++
T Consensus 73 sK 74 (346)
T KOG0109|consen 73 SK 74 (346)
T ss_pred cc
Confidence 77
No 137
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=1.1e-10 Score=90.13 Aligned_cols=74 Identities=32% Similarity=0.663 Sum_probs=68.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+|+|+|||..+++++|+++|+.||.|..+.+..+ +.+ +++|+|||+|.+.++|..|+..+ +|..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~-~~~-~~~~~~~v~f~s~~~a~~a~~~~--~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRD-KDT-KSKGFAFVEFEDEEDAEKALEAL--NGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeC-CCC-CcceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987 433 77899999999999999999999 99999999999864
No 138
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.3e-11 Score=112.98 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=79.6
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..+...|||..|++-+|+++|+-+|++||.|.+|.|++| +.||.+-.||||+|++.++..+|.-.| +...|+.|.|+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD-~ktgdsLqyaFiEFen~escE~AyFKM--dNvLIDDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRD-RKTGDSLQYAFIEFENKESCEQAYFKM--DNVLIDDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEec-ccccchhheeeeeecchhhHHHHHhhh--cceeeccceEE
Confidence 356679999999999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|.|+.+.
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9998665
No 139
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.19 E-value=5.8e-11 Score=125.10 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=69.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc--CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
...+|||+||++.+++++|+++|++| |.|++|+++ +|||||+|++.++|.+|++.| ||..|+|+.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---------rgfAFVeF~s~e~A~kAi~~l--nG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---------RDYAFVHFEDREDAVKAMDEL--NGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---------cCeEEEEeCCHHHHHHHHHHh--CCCEECCEEEE
Confidence 34689999999999999999999999 999999876 469999999999999999999 99999999999
Q ss_pred EEecCCcc
Q 004006 228 VKLDDGRR 235 (779)
Q Consensus 228 v~~~~~~~ 235 (779)
|++++++.
T Consensus 301 V~~Akp~~ 308 (578)
T TIGR01648 301 VTLAKPVD 308 (578)
T ss_pred EEEccCCC
Confidence 99998764
No 140
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=2.7e-08 Score=88.94 Aligned_cols=209 Identities=14% Similarity=0.053 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004006 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (779)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 622 (779)
+...|.-.|...|+...|..-+++.++.++. +..+|..+...|.+.|+.+.|.+-|++....... +..+.|+...-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445667888899999999999999888766 7778888888999999999999999999887665 7788899998899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004006 623 EKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSAL 701 (779)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 701 (779)
..|++++|...|++....-..+ -..+|..+..+..+.|+.+.|.++|++.++.. +........+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988653222 24688888888889999999999999999875 445667788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004006 702 AVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSF 757 (779)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 757 (779)
.+++.....+ ..+..++-..|..-.+.|+.+.+-++=.++.+. -|....|-.+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 9999987766 488889888899999999998888887777763 4565555443
No 141
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=4.4e-08 Score=98.02 Aligned_cols=218 Identities=14% Similarity=0.029 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.++..|.+++...+.+- .-....|..+...|.+.|++++|+..|+++++... .+...|+.+...+..
T Consensus 43 e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 43 EVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQ 110 (296)
T ss_pred HHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 788888888887544200 01234577788889999999999999999998753 367889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (779)
.|++++|.+.|++.++.... +..+|..++.++...|++++|++.|++..+..+. +.. .......+...++.++|.+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHH
Confidence 99999999999999886432 5778888888899999999999999999887543 221 12222234456788899988
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC---GF--SP-SIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
|.+..... .++...+ . ..+...|+...+ ..+..+.+. .. .+ ....|..+...+.+.|++++|+..|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 87655432 2222221 2 222334544333 244444321 00 01 2345677777777777777777777777
Q ss_pred HHCC
Q 004006 498 KSSG 501 (779)
Q Consensus 498 ~~~~ 501 (779)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 7654
No 142
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.18 E-value=2.5e-11 Score=120.61 Aligned_cols=82 Identities=29% Similarity=0.569 Sum_probs=77.2
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+||||||.+++++++|+.+|+.||.|+.|.+.+| ..||+++|||||+|.+.+.|++|++.| ||..|-||.|+|....
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ar~a~e~l--ngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKD-SETGRSKGFGFITFVNKEDARKALEQL--NGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccc-cccccccCcceEEEecHHHHHHHHHHh--ccceecCceEEEEEee
Confidence 4999999999999999999999999999999999 789999999999999999999999999 9999999999999877
Q ss_pred Ccchh
Q 004006 233 GRRLK 237 (779)
Q Consensus 233 ~~~~~ 237 (779)
.+...
T Consensus 357 ~r~~~ 361 (549)
T KOG0147|consen 357 ERVDT 361 (549)
T ss_pred eeccc
Confidence 66533
No 143
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=2.1e-08 Score=100.32 Aligned_cols=218 Identities=14% Similarity=0.022 Sum_probs=125.5
Q ss_pred CChHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 310 GDMHRARQTFENMRARG-IEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 310 g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
++.+.++..+.+++... ..+ ....|..+...|...|++++|...|++.++... .+...|+.+...|...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566677776666532 111 124466666777777777777777777777643 25677777777777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
..|+++.+..+. +..+|..++.++...|++++|++.|++..+.+ |+..........+...++.++|+..|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777776544 56677777777777777777777777777653 222111112222344566777777776544321
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 467 FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS---GI---KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG 536 (779)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 536 (779)
.++. |. ....+...|+...+ +.+..+.+. .. ......|..+...+.+.|++++|...|++..+..
T Consensus 196 -~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 21 12222334444333 233333321 00 0122456666666666677777777766666543
No 144
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.18 E-value=7.2e-11 Score=120.44 Aligned_cols=79 Identities=33% Similarity=0.660 Sum_probs=76.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++||||||+..+|+++|+++|.+||.|..+++..| +.+|+++|||||+|.+.+++..|+..+ +|..|.|++|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d-~~~~~~~g~~~v~f~~~~~~~~a~~~~--~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRD-RETGKSRGFAFVEFESEESAEKAIEEL--NGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeec-cccCccCceEEEEecCHHHHHHHHHHc--CCCeECCceeEeec
Confidence 469999999999999999999999999999999999 789999999999999999999999999 99999999999999
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 64
No 145
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.17 E-value=2.5e-10 Score=122.06 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=71.1
Q ss_pred ccceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+||++ .+|+++|+++|+.||.|.+|+|+++ + +|||||+|.+.++|..|+..| ||..|.|++|+|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~-----~g~afV~f~~~~~A~~Ai~~l--ng~~l~g~~l~v 345 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-K-----KETALIEMADPYQAQLALTHL--NGVKLFGKPLRV 345 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 346999999998 6999999999999999999999986 2 699999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.+++..
T Consensus 346 ~~s~~~ 351 (481)
T TIGR01649 346 CPSKQQ 351 (481)
T ss_pred EEcccc
Confidence 998654
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.17 E-value=9.4e-06 Score=81.80 Aligned_cols=444 Identities=12% Similarity=0.117 Sum_probs=222.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
|..+|+.||+-+..+ ..++++.+++.+... +.-+...|..-|......++++....+|.+.+..- .+...|..-+.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 777888898887655 899999999999865 34456789999999999999999999999987652 45666766665
Q ss_pred HHHcc-CCH----HHHHHHHHHHHHc-CCCC-ChhhHHHHHHH---------HHhcCChHHHHHHHHHHHHcCCCCChhh
Q 004006 375 GFAKM-GNA----EAADHWFEEAKER-HATL-NAIIYGNIIYA---------QCQTRNMERAEALVRDMEEEGIDAPIDI 438 (779)
Q Consensus 375 ~~~~~-g~~----~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 438 (779)
--.+. |+. +.-.+.|+...+. |..+ ....|...+.. |..+.+++...+++.++...-..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~----- 169 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH----- 169 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-----
Confidence 44332 222 2233445544432 2111 22234433332 22334455555666665543211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHH---------
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS--SGIKHNMK--------- 507 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~--------- 507 (779)
++++..+-|+...+. .|..+-..++. -+...+..|.++++++.. +|+..+..
T Consensus 170 ------------nlEkLW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~ 232 (656)
T KOG1914|consen 170 ------------NLEKLWKDYEAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKD 232 (656)
T ss_pred ------------cHHHHHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChH
Confidence 111111111111110 01111000000 011122223333332221 11111100
Q ss_pred ------HHHHHHHHHHhcCC--------HHHHHHHHHHHHH-CCCCCCHHHH-----HHHHHHHHhCCC-------HHHH
Q 004006 508 ------TYSMLINGFLKLKD--------WANVFAVFEDVMR-DGLKPDVVLY-----NNIIRAFCGMGN-------MDRA 560 (779)
Q Consensus 508 ------~~~~ll~~~~~~~~--------~~~a~~~~~~~~~-~g~~~~~~~~-----~~l~~~~~~~g~-------~~~A 560 (779)
.|..+|.--..++. ...+.-++++.+. .+..|+.... ...-..+...|+ .+++
T Consensus 233 e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 233 EIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 01111111100000 0001111111111 0111111100 000012222332 3445
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 561 IHIVKEMQKERHRPTSRTFMPIIHGFARA---GEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 637 (779)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (779)
..+++..+..-..-+..+|..+.+.-... ...+....++++++..-...-..+|..+++.-.+..-++.|..+|.++
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 55555544432222333333322211111 124555566666554322222345666777666777778888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-
Q 004006 638 TLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN- 715 (779)
Q Consensus 638 ~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 715 (779)
.+.+..+ +...++.++..|| .+|.+-|.++|+--+.. +..+..--...++-+...|+-..+..+|++....++.++
T Consensus 393 R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 8766555 5556666666655 46777888888766554 233444556677777788888888888888877654444
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCc
Q 004006 716 -TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ----PDVHTYTSFINACKCSKSN 767 (779)
Q Consensus 716 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~----pd~~~~~~l~~a~~~~g~~ 767 (779)
..+|+.++.-=...|+...+.++-+++... ++ +....-..+++-|.-.+..
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhcccc
Confidence 357888888778888888888887776543 22 2222344555555555544
No 147
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.5e-10 Score=110.89 Aligned_cols=88 Identities=22% Similarity=0.410 Sum_probs=82.5
Q ss_pred hhhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 145 ~~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
..+.+++..+||++||.+.-+.+|-..|..||.|.+.++..| +.||-+++||||.|++..+|..||..| ||..++++
T Consensus 418 q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfid-k~tnlskcfgfvSyen~~sa~~aI~am--ngfQig~K 494 (510)
T KOG0144|consen 418 QVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFID-KVTNLSKCFGFVSYENAQSAQNAISAM--NGFQIGSK 494 (510)
T ss_pred cccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEe-cccCHhhhcCcccccchhhhHHHHHHh--cchhhccc
Confidence 345667789999999999999999999999999999999999 999999999999999999999999999 99999999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
+++|.+.+++.
T Consensus 495 rlkVQlk~~~~ 505 (510)
T KOG0144|consen 495 RLKVQLKRDRN 505 (510)
T ss_pred cceEEeeeccC
Confidence 99999987663
No 148
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.3e-10 Score=80.54 Aligned_cols=50 Identities=36% Similarity=0.621 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 714 RNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887753
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.14 E-value=2.4e-05 Score=83.79 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVN--YYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAY 341 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (779)
..|.....+.+.+.|+ .. |...+. .+.+.|+.++|..+++.....+.. |..+...+-.+|
T Consensus 26 kkal~~~~kllkk~Pn---------------~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y 87 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPN---------------AL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVY 87 (932)
T ss_pred HHHHHHHHHHHHHCCC---------------cH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHH
Confidence 6777777888887775 22 233333 345899999999999998777655 889999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CC----
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RN---- 416 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---- 416 (779)
...+..++|..+|++.... -|+......+..+|++.+.+.+-.++=-++-+.-+. +...+=+++..+.+. ..
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCccc
Confidence 9999999999999999886 367888899999999999887755544444443222 344443444444332 11
Q ss_pred -----hHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 417 -----MERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFE-RLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 417 -----~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
..-|.+.++.+.+.+ ...+..-.......+...|++++|++++. .+.+.-..-+...-+.-++.+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 234556666666654 21222223333456677889999999984 44443333355555677888999999999
Q ss_pred HHHHHHHHHHCC
Q 004006 490 ALEVSKVMKSSG 501 (779)
Q Consensus 490 A~~~~~~m~~~~ 501 (779)
..++..++...+
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 999999988876
No 150
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=6.8e-11 Score=116.72 Aligned_cols=81 Identities=28% Similarity=0.531 Sum_probs=77.8
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||++||+.++.++|.++|+.+|+|..+.++.+ +.++.+||||||+|.-.+++++|++.. ++..|+||.|+|..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~-~gs~~~RGfgfVtFam~ED~qrA~~e~--~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTN-KGSSEKRGFGFVTFAMEEDVQRALAET--EQSKFEGRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecC-CCcccccCccceeeehHhHHHHHHHHh--hcCcccceecccccc
Confidence 59999999999999999999999999999999999 888999999999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
+.|.
T Consensus 83 ~~R~ 86 (678)
T KOG0127|consen 83 KKRA 86 (678)
T ss_pred cccc
Confidence 7775
No 151
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=3e-07 Score=95.99 Aligned_cols=202 Identities=12% Similarity=0.034 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHH--
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIE-PTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI-- 371 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-- 371 (779)
...|..+...+...|+..++.+.+.+..+.... .+. .........+...|++++|.+++++.++.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 445666777777888888887777776654221 121 222333445667799999999999988764 334445442
Q ss_pred -HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 372 -IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 372 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
+.......+....+.+.++..... ..........+..++...|++++|++.+++..+.. +.+...+..+...|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222222345555555555542111 12233445566678888999999999999998875 445677788888899999
Q ss_pred CHHHHHHHHHHHHHCCC-CCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 451 NEEKCLIVFERLKECGF-SPS--IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 451 ~~~~a~~~~~~~~~~g~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
++++|+..+++...... .++ ...|..+...+...|++++|..++++....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999988876532 122 234557788888899999999999887543
No 152
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.7e-07 Score=96.55 Aligned_cols=406 Identities=14% Similarity=0.117 Sum_probs=213.9
Q ss_pred CHHHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcC--------CCC
Q 004006 295 SRREFGLMVN--YYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--------IEM 364 (779)
Q Consensus 295 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~~ 364 (779)
|..+-..+++ .|...|+++.|.+-.+.+. +..+|..|.+.|.+.++++-|.-++-.|.... ..-
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444443 4667788887777666654 44778888888888777777766665554311 011
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (779)
+..+=..+...-...|.+++|+.+|.+.... ..|=..|-..|.+++|.++-+.--+. . -..+|.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHH
Confidence 1122233334445677888888888877653 23344566678888877765432211 1 1345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH----------CC---------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004006 445 GYTIIGNEEKCLIVFERLKE----------CG---------FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN 505 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~----------~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (779)
-+...++.+.|++.|++... .. -..|...|.-....+-..|+.+.|+.+|...+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 66677777777777765311 00 011333333344444445555555555544432
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 004006 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (779)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (779)
|-.+++..+-.|+.++|-++-++- -|......|.+.|...|++.+|...|.+... +...|+.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRl 1002 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRL 1002 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 333444455556666665554432 2445555666666666777777666665432 2233332
Q ss_pred HHhcCCHH---------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCC-
Q 004006 586 FARAGEMK---------------RALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD--------EMTLAG- 641 (779)
Q Consensus 586 ~~~~~~~~---------------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~~- 641 (779)
|..++.-| .|-+.|++. |. -+...+..|-+.|.+.+|+++-- +++..+
T Consensus 1003 cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1003 CKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 22222111 111122111 10 01112234555566555554311 112222
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCH---
Q 004006 642 -ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA-QKIPRNT--- 716 (779)
Q Consensus 642 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--- 716 (779)
...|....+...+-++...++++|..++...++. ...+..| +..+..--.++-+.|.- .+-.++.
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R 1144 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQER 1144 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHH
Confidence 2345555666666666677777777777665542 2233333 33333444444444431 1112332
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcch
Q 004006 717 -FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQR 769 (779)
Q Consensus 717 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~ 769 (779)
..+..+...|.+.|.|..|-+=|-++-.+ ...+.++.++|+.++
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 35677888899999999888877665332 345667778888765
No 153
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.12 E-value=9.5e-10 Score=110.31 Aligned_cols=88 Identities=34% Similarity=0.374 Sum_probs=75.0
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.....+|||+|||.+++..+|+++|++||.|+...|... ...+++.+||||+|.+.++++.|+.+ +-..++|+++.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr-~~~~~~~~fgFV~f~~~~~~~~~i~A---sp~~ig~~kl~ 360 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVR-SPGGKNPCFGFVEFENAAAVQNAIEA---SPLEIGGRKLN 360 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEe-ccCCCcCceEEEEEeecchhhhhhhc---CccccCCeeEE
Confidence 344456999999999999999999999999999888775 33455569999999999999999987 68899999999
Q ss_pred EEecCCcchhhH
Q 004006 228 VKLDDGRRLKNK 239 (779)
Q Consensus 228 v~~~~~~~~~~~ 239 (779)
|+..++...+..
T Consensus 361 Veek~~~~~g~~ 372 (419)
T KOG0116|consen 361 VEEKRPGFRGNG 372 (419)
T ss_pred EEeccccccccc
Confidence 999877665543
No 154
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=1.8e-10 Score=79.91 Aligned_cols=50 Identities=36% Similarity=0.657 Sum_probs=31.9
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
||..+||.+|++|++.|++++|+++|++|.+.|+.||..||++|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45666666666666666666666666666666666666666666666653
No 155
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=4e-11 Score=108.65 Aligned_cols=76 Identities=25% Similarity=0.508 Sum_probs=71.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+.++||||+.+.++..+|+..|.+||+|.+++|++| |+||-|+-.++|..|++.| ||..|+|++++|+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---------y~fvh~d~~eda~~air~l--~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---------YAFVHFDRAEDAVEAIRGL--DNTEFQGKRMHVQ 145 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc---------eeEEEEeeccchHHHHhcc--cccccccceeeee
Confidence 4459999999999999999999999999999999965 9999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
++.+|.+
T Consensus 146 ~stsrlr 152 (346)
T KOG0109|consen 146 LSTSRLR 152 (346)
T ss_pred eeccccc
Confidence 9988753
No 156
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.3e-10 Score=111.99 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=73.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.-..|||.||+..||++.|+++|++||.|+.|+.++| ||||-|.+.++|.+|++.+ ||+.|+|..|.|.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD---------YaFVHf~eR~davkAm~~~--ngkeldG~~iEvt 326 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD---------YAFVHFAEREDAVKAMKET--NGKELDGSPIEVT 326 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc---------eeEEeecchHHHHHHHHHh--cCceecCceEEEE
Confidence 3348999999999999999999999999999999877 9999999999999999999 9999999999999
Q ss_pred ecCCcchhhH
Q 004006 230 LDDGRRLKNK 239 (779)
Q Consensus 230 ~~~~~~~~~~ 239 (779)
+|++.-.++.
T Consensus 327 LAKP~~k~k~ 336 (506)
T KOG0117|consen 327 LAKPVDKKKK 336 (506)
T ss_pred ecCChhhhcc
Confidence 9998865543
No 157
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.10 E-value=2.2e-10 Score=101.25 Aligned_cols=79 Identities=28% Similarity=0.535 Sum_probs=72.7
Q ss_pred ccceEEeccCCCcCChHHHHH----HHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVME----FFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
+..+|||.||+..+.-++|++ +|++||.|.+|...+ |.+.||-|||.|.+.+.|..|+.+| +|..+-|++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k----t~KmRGQA~VvFk~~~~As~A~r~l--~gfpFygK~ 81 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK----TPKMRGQAFVVFKETEAASAALRAL--QGFPFYGKP 81 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC----CCCccCceEEEecChhHHHHHHHHh--cCCcccCch
Confidence 344999999999999999987 999999999998864 5888999999999999999999999 999999999
Q ss_pred EEEEecCCc
Q 004006 226 LTVKLDDGR 234 (779)
Q Consensus 226 ~~v~~~~~~ 234 (779)
++|++|+.+
T Consensus 82 mriqyA~s~ 90 (221)
T KOG4206|consen 82 MRIQYAKSD 90 (221)
T ss_pred hheecccCc
Confidence 999999766
No 158
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.08 E-value=3.5e-06 Score=84.82 Aligned_cols=427 Identities=13% Similarity=0.082 Sum_probs=237.0
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh
Q 004006 322 MRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA 401 (779)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 401 (779)
-++.+ .-|..+|+.||.-+... -++++.++++++... ++-....|..-+.......+++..+.+|.+++.. ..+.
T Consensus 12 rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnl 86 (656)
T KOG1914|consen 12 RIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNL 86 (656)
T ss_pred HHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhH
Confidence 34443 34889999999988665 899999999999875 4556788999999999999999999999999876 3456
Q ss_pred hhHHHHHHHHHh-cCChH----HHHHHHHHHHH-cCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHHC
Q 004006 402 IIYGNIIYAQCQ-TRNME----RAEALVRDMEE-EGIDA-PIDIYHMMMDG---------YTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 402 ~~~~~l~~~~~~-~g~~~----~A~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~ 465 (779)
..|...+.---+ .++.. ...+.|+-... .|..+ +..+|+..+.. |..+.+++...+++.+++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 666665533222 22222 22233333332 22211 22334433322 22233444445555555432
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHH-
Q 004006 466 GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR--DGLKPDVV- 542 (779)
Q Consensus 466 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~- 542 (779)
-+ +++++..+=|....+. .|..+-..++ --+...+..|.++++++.. .|+.....
T Consensus 167 Pm-----------------~nlEkLW~DY~~fE~~---IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~ 224 (656)
T KOG1914|consen 167 PM-----------------HNLEKLWKDYEAFEQE---INIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPA 224 (656)
T ss_pred cc-----------------ccHHHHHHHHHHHHHH---HHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 11 1111111111111110 0111111111 0112234444444444432 12211111
Q ss_pred --------------HHHHHHHHHHhCC------CH--HHHHHHHHHH-HHcCCCCCcccH-----HHHHHHHHhcCC---
Q 004006 543 --------------LYNNIIRAFCGMG------NM--DRAIHIVKEM-QKERHRPTSRTF-----MPIIHGFARAGE--- 591 (779)
Q Consensus 543 --------------~~~~l~~~~~~~g------~~--~~A~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~--- 591 (779)
.|-.+|.---..+ .. .+..-++++. .-.+..|+.... ...-+.+.+.|+
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccccc
Confidence 1222222111100 00 0111112211 111222221110 011112333333
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 592 ----MKRALEIFDMMRRSGCIPTVHTFNALILGLV---EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK 664 (779)
Q Consensus 592 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 664 (779)
-+++..+++.....-..-+..+|..+..--- +-...+....++++++..-..--..+|..+++.-.+..-.+.
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHH
Confidence 4556666666554322223334443332111 111355666677776644322223567778888788888999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 665 AFEYFTKLRNEGLEL-DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 665 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
|..+|.++.+.+..+ ++.+.++++..|| .++.+-|.++|+.-.+.- ..+...-...++-+...++-..|..+|++.+
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 999999999887766 7888888887775 577899999999766542 3444555788999999999999999999999
Q ss_pred HcCCCCC--HHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 744 QEGVQPD--VHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 744 ~~g~~pd--~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
..++.+| ..+|..+|+-=.+-|+...+.++-+++
T Consensus 463 ~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 463 TSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred hccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8877766 568999999999999999988887765
No 159
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.08 E-value=3e-10 Score=98.30 Aligned_cols=82 Identities=20% Similarity=0.424 Sum_probs=75.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc-CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF-GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+-++|+.+|..+.+..+...|.+| |.+..+++-++ +.||.|+|||||+|++++-|.-|-+.| |++.|.|+.+.|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRn-krTGNSKgYAFVEFEs~eVA~IaAETM--NNYLl~e~lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRN-KRTGNSKGYAFVEFESEEVAKIAAETM--NNYLLMEHLLEC 124 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecc-cccCCcCceEEEEeccHHHHHHHHHHh--hhhhhhhheeee
Confidence 34589999999999999999999998 77888888898 999999999999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.+=-+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 986555
No 160
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=2.9e-06 Score=80.32 Aligned_cols=316 Identities=10% Similarity=0.064 Sum_probs=196.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHh-HHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~ 373 (779)
+..-+.-|.+.+...|++..|+.-|..+++.+.. +-.++-.-...|...|+-.-|+.-+.+.++. .||.. ....-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 4556677899999999999999999999987321 3345566667888899999999999999885 56643 334455
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLN--AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
..+.+.|.++.|+.=|+.++......+ ...+..++ .. +++. .....+..+...|+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~-------~~-------~e~~---------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA-------LI-------QEHW---------VLVQQLKSASGSGD 170 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH-------hH-------HHHH---------HHHHHHHHHhcCCc
Confidence 677899999999999999987644211 11111111 11 1111 12233444556677
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 452 EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (779)
Q Consensus 452 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (779)
...|++....+++.- ..|...|..-..+|...|....|+.=++...+.. ..++..+..+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777777642 2366666666777777777777776666655442 23455555566666777777777777777
Q ss_pred HHHCCCCCCHH----HHHHH---------HHHHHhCCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHHhcCCHHHH
Q 004006 532 VMRDGLKPDVV----LYNNI---------IRAFCGMGNMDRAIHIVKEMQKERHRPTSRT---FMPIIHGFARAGEMKRA 595 (779)
Q Consensus 532 ~~~~g~~~~~~----~~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a 595 (779)
.++.+ ||.- .|..| +....+.+++-++++..+...+..+...... +..+-.++...+++.+|
T Consensus 249 CLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 66642 2321 11111 1122344556666666666665544322222 33344455566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG 641 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 641 (779)
++.-.++++.... |+.++.--..+|.-...|++|+.-|+...+.+
T Consensus 327 iqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 327 IQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777664322 46666666667777777777777777776654
No 161
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=3.1e-08 Score=100.24 Aligned_cols=220 Identities=15% Similarity=0.120 Sum_probs=124.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
..-+.+.|++.+|.-+|+...+.++. +..+|..|+.+....++-..|+..++++.+.+ +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34456778888888888888887666 77888888888888888888888888888875 55677777888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHH-----------HHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcC
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLIN-----------LYTKIGKVSKALEVSKVMK-SSGIKHNMKTYSMLINGFLKLK 520 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~-----------~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~ 520 (779)
..|++.|++++...++ |..+.. .+.....+.+..++|-.+. ..+...|..++..|.-.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8888888888664321 100000 0001111122222332222 2222344444455555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004006 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600 (779)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 600 (779)
++++|...|+.++...+. |...||.|...++...+.++|+..|.+.++..+. -++....|.-+|...|.+++|.+.|-
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 555555555555543322 4445555555555555555555555555554433 22233333334555555555554443
Q ss_pred H
Q 004006 601 M 601 (779)
Q Consensus 601 ~ 601 (779)
.
T Consensus 523 ~ 523 (579)
T KOG1125|consen 523 E 523 (579)
T ss_pred H
Confidence 3
No 162
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=5.9e-07 Score=92.91 Aligned_cols=403 Identities=15% Similarity=0.134 Sum_probs=221.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-------CCC-CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 304 NYYARRGDMHRARQTFENMRAR-------GIE-PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~-------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
++|+..|+..+|+.+.+.+.-. |-. .+..-...++..+ ..++++|..+|-+ +. + -...+.+
T Consensus 498 rcfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail--~kkfk~ae~ifle--qn----~---te~aigm 566 (1636)
T KOG3616|consen 498 RCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAIL--EKKFKEAEMIFLE--QN----A---TEEAIGM 566 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHH--HhhhhHHHHHHHh--cc----c---HHHHHHH
Confidence 4566667777766655543211 111 1122223333333 3467777777622 11 1 1245667
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
|....+|++|+.+-+.. +..--...-.+.+.++...|+-++|-++- .. +-. -...+..|.+.|...+|
T Consensus 567 y~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd-~laaiqlyika~~p~~a 634 (1636)
T KOG3616|consen 567 YQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGD-GLAAIQLYIKAGKPAKA 634 (1636)
T ss_pred HHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCc-cHHHHHHHHHcCCchHH
Confidence 77888888887654321 21111122233344455566666554431 11 111 12345566666666555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----------------------CCCCCHHHH-HHH
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS----------------------GIKHNMKTY-SML 512 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------~~~~~~~~~-~~l 512 (779)
...-..=.. +..|......+..++.+..-+++|-++|+++..- .++....+. ...
T Consensus 635 ~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~w 712 (1636)
T KOG3616|consen 635 ARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAW 712 (1636)
T ss_pred HHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHH
Confidence 543221111 0113333333333333333333333333322210 011011111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH
Q 004006 513 INGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM 592 (779)
Q Consensus 513 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (779)
...+...|+++.|+..|-+. ......+.+.....++.+|+.+++.+..... -...|-.+.+.|...|++
T Consensus 713 g~hl~~~~q~daainhfiea---------~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEA---------NCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHh---------hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 22333445555555544332 1223345566677888899999888887654 345677788889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKL 672 (779)
Q Consensus 593 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 672 (779)
+.|.++|.+.- .++-.|.+|.+.|+|++|.++-.+.. |.......|-.-..-+.+.|++.+|.++|-.+
T Consensus 782 e~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 782 EIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 99999887542 34556788999999999988876654 22334455666666677888888888877544
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004006 673 RNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (779)
Q Consensus 673 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (779)
. .|+ ..|.+|-+.|..++.+++.++-.- ..-..+...+..-|-..|+.+.|..-|-+..+
T Consensus 851 ~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------- 910 (1636)
T KOG3616|consen 851 G----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------- 910 (1636)
T ss_pred c----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------
Confidence 2 233 357788888888888887776532 12234556667777888888888877755532
Q ss_pred HHHHHHHHHHhcCCcchHHHhH
Q 004006 753 TYTSFINACKCSKSNQRNGRSW 774 (779)
Q Consensus 753 ~~~~l~~a~~~~g~~~~a~~~~ 774 (779)
|.+.++.|..++.|+.|.++-
T Consensus 911 -~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 911 -FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred -HHHHHHHhhhhhhHHHHHHHH
Confidence 567777777777777776654
No 163
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.3e-06 Score=90.67 Aligned_cols=333 Identities=10% Similarity=0.100 Sum_probs=161.6
Q ss_pred HHHHHHHHcCCC--CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004006 352 SCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (779)
Q Consensus 352 ~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (779)
.+++..+..+++ -|.+--+..+.++...+-..+-+++++++...... -+...-+.|+....+. +..+..+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 344444443332 24445555566666666666666666666543211 1222223333333222 233344444444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------CCCCCHhhHHHHHHHHHHcC
Q 004006 428 EEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----------------------GFSPSIISYGCLINLYTKIG 485 (779)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------------------g~~~~~~~~~~li~~~~~~g 485 (779)
-..+. + .+.......+-+++|+.+|++.--. .+ -....|..+..+-.+.|
T Consensus 1047 dnyDa-~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1047 DNYDA-P------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred ccCCc-h------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcC
Confidence 33221 1 1223344444555555555543210 00 01233444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004006 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (779)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (779)
...+|++-|-+. .|...|..+++...+.|.|++..+.+....+..-+|... +.|+-+|++.++..+.++.+.
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc
Confidence 444444443221 133444444444444444444444444333333222221 234444444444444333221
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (779)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 645 (779)
.|+......+.+-|...+.++.|.-+|. ++..|..|...+...|++..|.+.-++. .+
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 2334444444444444444444444443 2334555556666666666666554433 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004006 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (779)
Q Consensus 646 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (779)
..||..+-.+|...+.+.-| +|-..++-....-+..|+..|...|-+++...+++...-.. .-....|+-|.-.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHH
Confidence 56777777777766655433 23333444556667888888888999998888888665432 3455567777766
Q ss_pred HHhc
Q 004006 726 WARR 729 (779)
Q Consensus 726 ~~~~ 729 (779)
|.+-
T Consensus 1323 Ysky 1326 (1666)
T KOG0985|consen 1323 YSKY 1326 (1666)
T ss_pred HHhc
Confidence 6655
No 164
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3e-10 Score=101.46 Aligned_cols=85 Identities=26% Similarity=0.455 Sum_probs=74.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee---eceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~---~~~~~ 226 (779)
+.++||||-|...-.|+|++.+|..||.|.+|.+.+. ..|-+|||+||.|.+..+|++||..| +|..- -+..+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI~aL--HgSqTmpGASSSL 93 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAINAL--HGSQTMPGASSSL 93 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC--CCCCCCCceEEEeccchHHHHHHHHh--cccccCCCCccce
Confidence 3459999999999999999999999999999999986 45899999999999999999999999 98875 35678
Q ss_pred EEEecCCcchhh
Q 004006 227 TVKLDDGRRLKN 238 (779)
Q Consensus 227 ~v~~~~~~~~~~ 238 (779)
.|.++...+.|.
T Consensus 94 VVK~ADTdkER~ 105 (371)
T KOG0146|consen 94 VVKFADTDKERT 105 (371)
T ss_pred EEEeccchHHHH
Confidence 899986665443
No 165
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=1.2e-06 Score=91.40 Aligned_cols=199 Identities=8% Similarity=0.005 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGI-EMS-LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
..|..+...+...|+.+++...+....+... ..+ ..........+...|++++|.++++++.+..+. +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3455555666666777776666666554321 112 222333444566778888888888887776433 4434332 22
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 004006 410 AQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG 485 (779)
Q Consensus 410 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 485 (779)
.+.. .+..+.+.+.+... ....+.....+..+...+...|++++|...+++..+.... +...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 2222 34444444444331 1111222333445556677777777777777777765422 4556666777777777
Q ss_pred CHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 486 KVSKALEVSKVMKSSGI-KHNM--KTYSMLINGFLKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 486 ~~~~A~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (779)
++++|...+++...... .++. ..|..+...+...|++++|+.+|+++..
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777665421 1121 2344566667777777777777777643
No 166
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=1.3e-07 Score=94.33 Aligned_cols=200 Identities=8% Similarity=0.041 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG-DMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (779)
+.|...+.++++.+|.+ ...|+....++...| ++++++..++++.+.+.+ +..+|+....++.
T Consensus 54 erAL~lt~~aI~lnP~~---------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 54 PRALDLTADVIRLNPGN---------------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 88999999999999973 344555555666667 579999999999987644 6667887776666
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCh
Q 004006 343 VGRDM--EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT---RNM 417 (779)
Q Consensus 343 ~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 417 (779)
+.|+. ++++++++++++.+.. |..+|+....++.+.|+++++++.++++++.++. |..+|+....++.+. |.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66653 6789999999887644 8899999999999999999999999999998766 778888777766554 222
Q ss_pred ----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 004006 418 ----ERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK 483 (779)
Q Consensus 418 ----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 483 (779)
++.++...+++... +.+..+|+.+...+.. .++..+|.+.+.+..+.++. +......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 45666666777664 5677778877777766 34455677777776664432 56667777777765
No 167
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.03 E-value=2e-09 Score=93.78 Aligned_cols=86 Identities=23% Similarity=0.403 Sum_probs=70.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee---ceEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVLTV 228 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~---~~~~~v 228 (779)
++|||.+||.++...+|..+|..|-..+.+.+-...+...-.+-+|||+|.+...|.+|+.+| ||..|+ +..+++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL--NGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL--NGVRFDPETGSTLHI 112 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHh--cCeeeccccCceeEe
Confidence 499999999999999999999999888877664321211112479999999999999999999 999995 899999
Q ss_pred EecCCcchhhH
Q 004006 229 KLDDGRRLKNK 239 (779)
Q Consensus 229 ~~~~~~~~~~~ 239 (779)
++|++...+.+
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 99987765443
No 168
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.6e-05 Score=85.77 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=167.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
..++......+.++...+-..+-+++++++.-.+-. -+....|.||-.-.+ -+.....+..+++-.-+ --
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-------a~ 1052 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-------AP 1052 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-------ch
Confidence 347777888899999999999999999998754211 122234445444433 35566666666664432 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
.+.......+-+++|..+|++.. .+..+...|+. ..+++++|.+.-++.. ...+|..+..+-.+.|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcC
Confidence 34555667778888888888753 24444444442 3466677766655543 2456888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 451 NEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (779)
Q Consensus 451 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (779)
...+|++.|-+. .|...|..+++...+.|.+++-.+++...++..-.|.. =..||-+|++.++..+..+++.
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc
Confidence 888887776543 26677888888888888888888888777766444433 3467778888887777665542
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIF 599 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 599 (779)
-|+......+..-|...|.++.|.-+|.. ...|..|...+...|++..|.+.-
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 24556666666667777777766666543 223455555555555555554433
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.03 E-value=7.5e-05 Score=80.22 Aligned_cols=226 Identities=12% Similarity=0.138 Sum_probs=158.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
....+++..|+...+.+.++. |+ ..|..++++ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 346678999999999998873 33 334455554 45789999999999988877655 8999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-C---------HH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG-N---------EE 453 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~ 453 (779)
+|..+|+++... .|+......+..+|.+.+++.+-.++--+|-+. .+.+...+-+++..+.+.- . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999887 445777888888999998887655554444442 3334444444554443321 1 22
Q ss_pred HHHHHHHHHHHCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 454 KCLIVFERLKECG-FSPSIISYGCLINLYTKIGKVSKALEVSK-VMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (779)
Q Consensus 454 ~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (779)
-|.+.++.+.+.+ .--+..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566666543 21122233344556677899999999994 333333334555556778889999999999999999
Q ss_pred HHHCCCC
Q 004006 532 VMRDGLK 538 (779)
Q Consensus 532 ~~~~g~~ 538 (779)
+...|.+
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 9888655
No 170
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=1.9e-10 Score=110.73 Aligned_cols=86 Identities=26% Similarity=0.525 Sum_probs=78.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.+++|||+|+|+++++.|++.|++||.|.++.+++| +.+|+++||+||+|++.+...+++.. .-+.|+||.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d-~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRD-PSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEecc-CCCCCcccccceecCCCcchheeecc---cccccCCccccce
Confidence 5679999999999999999999999999999999999 99999999999999999999999865 4788999999999
Q ss_pred ecCCcchhhH
Q 004006 230 LDDGRRLKNK 239 (779)
Q Consensus 230 ~~~~~~~~~~ 239 (779)
.+.++..+.+
T Consensus 81 ~av~r~~~~~ 90 (311)
T KOG4205|consen 81 RAVSREDQTK 90 (311)
T ss_pred eccCcccccc
Confidence 9888865543
No 171
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=2.4e-06 Score=88.95 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=12.4
Q ss_pred CChhhHHHHHHHHHhcCChHH
Q 004006 399 LNAIIYGNIIYAQCQTRNMER 419 (779)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~ 419 (779)
.|..+|..=|+.+|+..+...
T Consensus 836 rNa~afgF~is~L~kL~dTKs 856 (1102)
T KOG1924|consen 836 RNAQAFGFNISFLCKLRDTKS 856 (1102)
T ss_pred ccchhhccchHHHHhhccccc
Confidence 356666666666666655443
No 172
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=3.7e-07 Score=91.02 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=157.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
+..+-..+...++.++|+.+++.+++.+.. +..+|+....++...| ++++++++++++++.+.. +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 344445556677899999999999987433 4557887777777777 689999999999987544 6778888877777
Q ss_pred ccCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCH
Q 004006 378 KMGNA--EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNE 452 (779)
Q Consensus 378 ~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 452 (779)
+.|+. ++++.+++++.+.+.. |..+|.....++...|+++++++.++++++.+ ..+..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence 77763 7789999999988765 88999999999999999999999999999986 45677777776665554 222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 453 ----EKCLIVFERLKECGFSPSIISYGCLINLYTKI----GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (779)
Q Consensus 453 ----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (779)
++.++...+++..... |...|+-+..++... ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4566666666665432 677788777777663 34456777777766543 2356667777777764
No 173
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=2.6e-06 Score=88.27 Aligned_cols=265 Identities=14% Similarity=0.122 Sum_probs=124.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWA 523 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 523 (779)
.+......+.+|+.+++.+..... -...|..+.+-|...|+++.|.++|.+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 334445556666666666655422 2234555666666666666666666432 12344556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 524 NVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (779)
Q Consensus 524 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 603 (779)
.|.++-++.. |.......|..-..-+-+.|++.+|.++|-.+.. -...|.+|-+.|..+..+++..+-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~---------p~~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE---------PDKAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC---------chHHHHHHHhhCcchHHHHHHHHhC
Confidence 6666655443 2232334444444455556666666555432211 1233455666666666555554322
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------------
Q 004006 604 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT------------- 670 (779)
Q Consensus 604 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~------------- 670 (779)
-. .-..+...+..-|-..|++..|...|-+.-+ |...++.|...+.+++|.++-+
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 11 0112333344445555555555554433221 2222233333333333322211
Q ss_pred -HHHHcCCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 671 -KLRNEGLELDVF------TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 671 -~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
..+..|-..-+. .+..-++.-+..+.++-|..+-+-..+.. ...+...+..-+-..|++++|-+-+-+.+
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 111111110000 11222333344555666666555444332 11223334455677888888888777776
Q ss_pred Hc
Q 004006 744 QE 745 (779)
Q Consensus 744 ~~ 745 (779)
+.
T Consensus 1023 kl 1024 (1636)
T KOG3616|consen 1023 KL 1024 (1636)
T ss_pred hc
Confidence 53
No 174
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=2.1e-06 Score=101.84 Aligned_cols=373 Identities=9% Similarity=-0.003 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHV----YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
.+......|...|++.+|+..+..+. +... .......+...|++..+..+++.+.......+........
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHH
Confidence 34455667777888877776444331 2221 1122233455678887777776652211111233334555
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATL--------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP----IDIYHM 441 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 441 (779)
..+...|++++|..+++.+...-... .......+...+...|++++|...+++..+.--..+ ....+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 66678899999999998876531110 112223344566789999999999998876311111 123456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHH
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKEC----GFS-PSIISYGCLINLYTKIGKVSKALEVSKVMKSS----GIK--H-NMKTY 509 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~ 509 (779)
+...+...|++++|...+.+.... |.. ....++..+...+...|++++|...+++.... +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 667788899999999999887643 111 11234556677888999999999988776542 211 1 22344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-cccHH----
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVMRDG--LKP--DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-SRTFM---- 580 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~---- 580 (779)
..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.++|...+..+........ ...+.
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 556667777899999999988875531 111 233445566678889999999999888755311111 11111
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 004006 581 -PIIHGFARAGEMKRALEIFDMMRRSGCIPT---VHTFNALILGLVEKRQMEKAIEILDEMTLA----GISPN-EHTYTT 651 (779)
Q Consensus 581 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~-~~~~~~ 651 (779)
..+..+...|+.+.|...+........... ...+..+..++...|++++|..++++.... +...+ ..++..
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 112344567899999988776553211111 111345666788899999999999887643 22221 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~ 676 (779)
+..++...|+.++|...+.+.++..
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7778889999999999999998764
No 175
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=3.7e-06 Score=99.76 Aligned_cols=372 Identities=9% Similarity=-0.017 Sum_probs=218.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
....+...|++.+|......+.... .-..............|+++.+.++++.+.......+..........+...|+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 3444555666666655444332110 00111222233445567777777776655221111122233444556677889
Q ss_pred HHHHHHHHHHHHHCCC------CCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhc
Q 004006 452 EEKCLIVFERLKECGF------SPS--IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM----KTYSMLINGFLKL 519 (779)
Q Consensus 452 ~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~ 519 (779)
++++..++....+.-- .+. ......+...+...|++++|...++......-..+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9998888887654310 011 112223345566789999999998887663111121 2345566667788
Q ss_pred CCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-CcccHHHHHHHHH
Q 004006 520 KDWANVFAVFEDVMRDGLK-----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE----RHR--P-TSRTFMPIIHGFA 587 (779)
Q Consensus 520 ~~~~~a~~~~~~~~~~g~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~ 587 (779)
|++++|...+++....... ....++..+...+...|++++|...+++.... +.. + ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 9999999888887643111 11234455667788899999999888876543 211 0 1122334455667
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHH
Q 004006 588 RAGEMKRALEIFDMMRRSG--CIP--TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-NEHTY-----TTIMHGYA 657 (779)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~-----~~li~~~~ 657 (779)
..|++++|...+.+..... ..+ ....+..+...+...|++++|...+..+....... ....+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 7899999998888775431 111 23334445567778899999998888775421011 11111 11223445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc
Q 004006 658 SLGDTGKAFEYFTKLRNEGLELD---VFTYEALLKACCKSGRMQSALAVTKEMSAQ----KIPR-NTFVYNILIDGWARR 729 (779)
Q Consensus 658 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~ 729 (779)
..|+.+.|..++........... ...+..+..++...|+.++|..++++.... +... ...++..+..++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 57888888888776554221111 112456777788899999999998887642 2121 234567778888899
Q ss_pred CCHHHHHHHHHHHHHc
Q 004006 730 GDVWEAADLMQQMKQE 745 (779)
Q Consensus 730 g~~~~A~~~~~~m~~~ 745 (779)
|+.++|...+.++.+.
T Consensus 745 G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 745 GRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998875
No 176
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=9.4e-10 Score=102.83 Aligned_cols=81 Identities=19% Similarity=0.353 Sum_probs=75.6
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
...-.++||..+.++.+++||+.+|+.||.|..|.+.++ ..++.+|||||++|.+..+...|+..| |-..|+|..++
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAiasM--NlFDLGGQyLR 283 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLR 283 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc-CCCCCccceeeEEeccccchHHHhhhc--chhhcccceEe
Confidence 344469999999999999999999999999999999999 888999999999999999999999999 99999999999
Q ss_pred EEec
Q 004006 228 VKLD 231 (779)
Q Consensus 228 v~~~ 231 (779)
|..+
T Consensus 284 VGk~ 287 (544)
T KOG0124|consen 284 VGKC 287 (544)
T ss_pred cccc
Confidence 9754
No 177
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.5e-09 Score=109.30 Aligned_cols=80 Identities=21% Similarity=0.444 Sum_probs=73.5
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
.+||.||++.++.++|.++|+.||.|.+|++..| ..| ++|| ||+|+++++|++|+..+ ||..+.|+.|.|....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~--ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKL--NGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHh--cCcccCCCeeEEeecc
Confidence 4999999999999999999999999999999998 334 9999 99999999999999999 9999999999999887
Q ss_pred Ccchhh
Q 004006 233 GRRLKN 238 (779)
Q Consensus 233 ~~~~~~ 238 (779)
.+..+.
T Consensus 152 ~~~er~ 157 (369)
T KOG0123|consen 152 RKEERE 157 (369)
T ss_pred chhhhc
Confidence 765443
No 178
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.1e-07 Score=96.29 Aligned_cols=225 Identities=13% Similarity=0.075 Sum_probs=147.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
.+.-+.+.|++.+|.-+|+..++.+ +-+...|..|......+++-..|+..+.+.++.... +....-.|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 3445678888999999998888875 667888888888888899888899988888886432 56677778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCC
Q 004006 487 VSKALEVSKVMKSSGIKHNMKTYSMLI---------NGFLKLKDWANVFAVFEDVMR-DGLKPDVVLYNNIIRAFCGMGN 556 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~ll---------~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~ 556 (779)
-..|++.++..+....+ ..|.... ..+.......++.++|-++.. .+...|..++..|.-.|.-.|+
T Consensus 369 q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 88898888888664321 0000000 011112223444455544433 3334566666666666667777
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 557 MDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 557 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
+++|+..|+.++...+. |..+|+.|...++...+.++|+..|.++++..+. -+.+...|..+|...|.|++|.+.|-.
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 77777777777666655 6666777777777777777777777777665332 244555566666677777777666655
Q ss_pred HH
Q 004006 637 MT 638 (779)
Q Consensus 637 m~ 638 (779)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 43
No 179
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=4.7e-07 Score=100.49 Aligned_cols=226 Identities=11% Similarity=0.066 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR-GIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
+...|-.-|....+.++.++|++++++++.. +++- -...|.++++.....|.-+...++|++..+. .-...+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3445666677777777777777777777654 1111 1225666666666666666777777777663 22345667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHh
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTI 448 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 448 (779)
.|...|.+.+++++|.++|+.|.++-. .....|...+..+.++++-+.|..++.+..+. ++. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 777777777777777777777776533 35566777777777777777777777666653 111 23344455555566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 004006 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANV 525 (779)
Q Consensus 449 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a 525 (779)
.|+.+++..+|+.++....+ -...|+..|++-.++|+.+.+.++|+++...++.+- -..|..++..-.+.|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 67777777777766654222 455677777777777777777777777766655432 23444444444444444333
No 180
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.92 E-value=6.6e-09 Score=99.84 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=73.0
Q ss_pred ceEEeccCCCcCChHHHHHHHh-ccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+.+||.|+|+++...+|+.+|. +-|+|..|.+..| .+||+||||.|||.+++.+++|++.| |.+.++||+|+|..
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~l--nk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKL--NKYEVNGRELVVKE 120 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHh--hhccccCceEEEec
Confidence 3699999999999999999996 6899999999998 67999999999999999999999999 99999999999987
Q ss_pred cCC
Q 004006 231 DDG 233 (779)
Q Consensus 231 ~~~ 233 (779)
..+
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 654
No 181
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.92 E-value=7.2e-09 Score=113.45 Aligned_cols=70 Identities=21% Similarity=0.452 Sum_probs=59.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhcc------------CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQF------------GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~ 219 (779)
++|||||||+.+|+++|+++|.+| +.|..+.+. +.+|||||+|.+.++|..|+ +| ||.
T Consensus 176 r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al-~l--~g~ 245 (509)
T TIGR01642 176 RRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAM-AL--DSI 245 (509)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhh-cC--CCe
Confidence 599999999999999999999975 234444444 34899999999999999999 47 999
Q ss_pred eeeceEEEEEec
Q 004006 220 EFHGRVLTVKLD 231 (779)
Q Consensus 220 ~~~~~~~~v~~~ 231 (779)
.|.|+.|+|...
T Consensus 246 ~~~g~~l~v~r~ 257 (509)
T TIGR01642 246 IYSNVFLKIRRP 257 (509)
T ss_pred EeeCceeEecCc
Confidence 999999999753
No 182
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=4.4e-09 Score=98.47 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=68.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+||||+|...+++.+|++.|.+||+|+.+.+... +|||||+|.+..+|+.|..+. .|-..|+|++|+|.|.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~-~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-------KGCAFVTFTTREAAEKAAEKS-FNKLVINGFRLKIKWG 300 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-------cccceeeehhhHHHHHHHHhh-cceeeecceEEEEEeC
Confidence 49999999999999999999999999999999987 789999999999999999875 4667789999999999
Q ss_pred CC
Q 004006 232 DG 233 (779)
Q Consensus 232 ~~ 233 (779)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 183
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=1.2e-07 Score=93.24 Aligned_cols=252 Identities=13% Similarity=0.175 Sum_probs=155.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 004006 478 INLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNM 557 (779)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 557 (779)
++-+.-.|++..++.-.+ .....-.........+.++|...|+++.++. ++... ..|.......+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccch
Confidence 344556788888886665 2222212234455567788888888776543 33222 245555554444444333445
Q ss_pred HHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 558 DRAIHIVKEMQKERHRP-TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 558 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
+.++.-+++........ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444433332221 2222222334566678899888887643 2566666778888899999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004006 637 MTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712 (779)
Q Consensus 637 m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (779)
|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ...+..+++.+..++...|++++|.+++++....+
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 88643 33444445554432 23588999999997665 45688888888888889999999999998887665
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 004006 713 PRNTFVYNILIDGWARRGDV-WEAADLMQQMKQE 745 (779)
Q Consensus 713 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 745 (779)
+.+..++..++-+....|+. +.+.+++.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55677777788777788876 6677888888763
No 184
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=1.5e-07 Score=92.57 Aligned_cols=248 Identities=13% Similarity=0.108 Sum_probs=118.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
.=.|+|..++.-.+ ........+......+.+++...|+++.++. ++.+.. .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 33566666665554 2222112223344555566666666554332 222221 334444433333332223334444
Q ss_pred HHHHHHHHcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 387 HWFEEAKERHAT-LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 387 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
.-++........ .+.........++...|++++|++++.+. .+.......+.+|.+.++.+.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 433332222111 12222233334455566666666665432 23444455556666666666666666666654
Q ss_pred CCCCCHhhHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 466 GFSPSIISYGCLINL----YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV 541 (779)
Q Consensus 466 g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 541 (779)
+ .|. +...++.+ +.-.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. |.
T Consensus 161 ~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~ 235 (290)
T PF04733_consen 161 D--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DP 235 (290)
T ss_dssp S--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HH
T ss_pred C--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CH
Confidence 2 222 22222222 22233566777777775543 3456666666666666677777777776666554333 45
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHc
Q 004006 542 VLYNNIIRAFCGMGNM-DRAIHIVKEMQKE 570 (779)
Q Consensus 542 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 570 (779)
.+...++.+....|+. +.+.+++.++...
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5666666666666665 5555666666554
No 185
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.81 E-value=1.9e-08 Score=99.99 Aligned_cols=86 Identities=15% Similarity=0.317 Sum_probs=77.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
-+++|||.+|+..+...+|+.+|++||.|...+||.+ ..+-..++||||+..+.+.|.++|..| +...|+||.|.|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTN-aRsPGaRCYGfVTMSts~eAtkCI~hL--HrTELHGrmISVE 480 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN-ARSPGARCYGFVTMSTSAEATKCIEHL--HRTELHGRMISVE 480 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeec-CCCCCcceeEEEEecchHHHHHHHHHh--hhhhhcceeeeee
Confidence 3458999999999999999999999999999999998 666677999999999999999999999 9999999999999
Q ss_pred ecCCcchhh
Q 004006 230 LDDGRRLKN 238 (779)
Q Consensus 230 ~~~~~~~~~ 238 (779)
.++.-..+.
T Consensus 481 kaKNEp~Gk 489 (940)
T KOG4661|consen 481 KAKNEPGGK 489 (940)
T ss_pred ecccCcccc
Confidence 887654443
No 186
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.81 E-value=9.3e-09 Score=106.46 Aligned_cols=79 Identities=20% Similarity=0.450 Sum_probs=73.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++||||+|+..+++.||.++|+.||.|.+|.++-. +|||||......+|.+|+.+| +.+.+.++.|+|.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-------R~cAfI~M~~RqdA~kalqkl--~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-------RGCAFIKMVRRQDAEKALQKL--SNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-------CceeEEEEeehhHHHHHHHHH--hcccccceeeEEee
Confidence 348999999999999999999999999999999876 999999999999999999999 99999999999999
Q ss_pred cCCcchhh
Q 004006 231 DDGRRLKN 238 (779)
Q Consensus 231 ~~~~~~~~ 238 (779)
+.++..+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 97775443
No 187
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=2e-08 Score=103.40 Aligned_cols=81 Identities=27% Similarity=0.454 Sum_probs=70.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCC--CCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN--FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..++|||.||++++|.++++..|.+.|.|.++.|..-++. --.|.|||||+|.+.++|++|++.| +|..|+|+.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~l--qgtvldGH~l~ 591 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKAL--QGTVLDGHKLE 591 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHh--cCceecCceEE
Confidence 3345999999999999999999999999999988764111 1124599999999999999999999 99999999999
Q ss_pred EEecC
Q 004006 228 VKLDD 232 (779)
Q Consensus 228 v~~~~ 232 (779)
|.++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99987
No 188
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=4.7e-06 Score=92.84 Aligned_cols=204 Identities=15% Similarity=0.103 Sum_probs=96.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM-----SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIY 404 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (779)
+...|-..+......+++++|.+++++.+.. +.+ -.-.|..+++.....|.-+...++|+++.+. .-....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3344555555555555555555555555442 111 1224444454444445555555555555442 1122344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHH
Q 004006 405 GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTK 483 (779)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~ 483 (779)
..|..+|.+.+.+++|.++|+.|.+. ..-...+|...+..+.+..+-+.|..++.+.++.-.+- .+......+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 45555555555555555555555543 12234445555555555555555555555554431110 12233334444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (779)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (779)
.|+.+.+..+|+...... +--...|+..|++-.++|+.+.+..+|++++..++.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 555555555555544432 123444555555555555555555555555554433
No 189
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=6.3e-07 Score=93.41 Aligned_cols=190 Identities=10% Similarity=0.097 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.|.-+|-+|...|+..+|..+..+..++ +||...|..+..+....--+++|+++++....+ ....+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 3556788888888888888887777774 677888888888877777778888887765432 2233333444
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (779)
+.++|+++.+.|+.-.+...- -..+|+.+..++.+.++++.|.+.|....... +.+...||.+-.+|.+.++-.+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHH
Confidence 578888888888887776433 56788888888888888888888888887764 4456778888888888888888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 458 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
.+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus 575 ~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 575 KLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88888887643 666777777788888888888888877765
No 190
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.77 E-value=1.2e-08 Score=98.01 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=70.4
Q ss_pred hccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 147 ~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
..++.|+|||.|||++.|...|++-|..||.|..+.|+.. |+++| .|.|.++++|++|++.| ||..|+||.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~----GkskG--VVrF~s~edAEra~a~M--ngs~l~Gr~I 603 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN----GKSKG--VVRFFSPEDAERACALM--NGSRLDGRNI 603 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc----CCccc--eEEecCHHHHHHHHHHh--ccCcccCcee
Confidence 3467789999999999999999999999999999999544 88888 89999999999999999 9999999999
Q ss_pred EEEec
Q 004006 227 TVKLD 231 (779)
Q Consensus 227 ~v~~~ 231 (779)
+|.++
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99863
No 191
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=7.8e-06 Score=85.54 Aligned_cols=234 Identities=12% Similarity=0.135 Sum_probs=168.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004006 438 IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFL 517 (779)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 517 (779)
.-..+...+...|-...|+.+|+++. .|.-.|.+|...|+..+|..+..+..++ +++...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34456678888888888888888764 3556778888888888888888777763 578888888888887
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004006 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE 597 (779)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 597 (779)
...-+++|+++++..... .-..+.....+.++++++.+.|+.-.....- ...+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765332 2222333334478888888888877666443 55677777777788888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004006 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL 677 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 677 (779)
.|.......+. +...||++-.+|.+.++-.+|...+.+..+.+ .-+...|..-+....+.|.+++|++.+.++.+...
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 88888775443 56788888888888888888888888888776 55556666666677788888888888888775421
Q ss_pred -CCCHHHHHHHHHHHH
Q 004006 678 -ELDVFTYEALLKACC 692 (779)
Q Consensus 678 -~~~~~~~~~l~~~~~ 692 (779)
.-|..+...++....
T Consensus 619 ~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTVL 634 (777)
T ss_pred hcccchhhHHHHHHHH
Confidence 124444444444433
No 192
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=1.1e-08 Score=105.40 Aligned_cols=82 Identities=32% Similarity=0.444 Sum_probs=76.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|.|.|+|+..+-.+++++|..||.+++|+|..- ...+.++|||||+|-++..|.+|+.+| .+..|-||.+.++|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al--~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDAL--GSTHLYGRRLVLEW 689 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhh--cccceechhhheeh
Confidence 469999999999999999999999999999999975 567788999999999999999999999 88899999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
|++..
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 97764
No 193
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=5.3e-09 Score=93.93 Aligned_cols=72 Identities=31% Similarity=0.651 Sum_probs=66.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.++|||+|++.+.+.+|+.+|..||.+.++.+. .||+||+|++..+|..|+..+ ||..|.|..+.|+++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---------~gf~fv~fed~rda~Dav~~l--~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---------NGFGFVEFEDPRDADDAVHDL--DGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---------cccceeccCchhhhhcccchh--cCceecceeeeeecc
Confidence 379999999999999999999999999999775 579999999999999999999 999999999999998
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
+..
T Consensus 71 r~~ 73 (216)
T KOG0106|consen 71 RGK 73 (216)
T ss_pred ccc
Confidence 754
No 194
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.70 E-value=1.6e-08 Score=97.68 Aligned_cols=83 Identities=27% Similarity=0.489 Sum_probs=76.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..++|||+|+.+++++++++.|.+||.|..+.++.| +.+.+++|||||+|++++++.+++.. ..+.|+|+.+.|..
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~---~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ---KFHDFNGKKVEVKR 172 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeec-ccccccccceeeEeccccccceeccc---ceeeecCceeeEee
Confidence 459999999999999999999999999999999999 99999999999999999999999865 78999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
|.++-..
T Consensus 173 A~pk~~~ 179 (311)
T KOG4205|consen 173 AIPKEVM 179 (311)
T ss_pred ccchhhc
Confidence 9877543
No 195
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=2.4e-06 Score=83.13 Aligned_cols=186 Identities=17% Similarity=0.099 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---hHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTY 369 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~ 369 (779)
....+..++..|.+.|++++|+..|+++....... ...++..+..++...|++++|...++++++.... +. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 56677788899999999999999999998863221 1246778888999999999999999999886422 22 256
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 370 SIIVGGFAKM--------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (779)
Q Consensus 370 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 441 (779)
..+..++.+. |++++|++.|+++....+. +...+..+..... .. .... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHHH
Confidence 6666677655 7889999999999887443 3333322221110 00 0000 11234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKECGF-SP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
+...|...|++++|+..|.++.+... .| ....+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66778899999999999999887532 12 3467888999999999999999998887764
No 196
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=9.3e-06 Score=90.15 Aligned_cols=220 Identities=10% Similarity=0.124 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcC------------
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG------------ 361 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------ 361 (779)
.+...|..|+..|...|++++|+++++...+.... ....|..+...+...+++.++.-+ .+...-
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 46677889999999999999999999988776322 333444444466666666655544 222210
Q ss_pred ------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 004006 362 ------IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP 435 (779)
Q Consensus 362 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 435 (779)
..-+...+.+++.+|-+.|+.++|..+++++++.++. |..+.+.++..|+.. ++++|++++.+....
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 0112356667777777777777777777777777644 777777777777777 777777777666553
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 004006 436 IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS-GIKHNMKTYSMLIN 514 (779)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~ 514 (779)
|....++..+.+++.++...... | .+.-.++.+.+... +...-..++..+-.
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~-d----------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSD-D----------------FDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcc-c----------------chHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 44445566666666666554211 1 11112222222221 11222334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 515 GFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAF 551 (779)
Q Consensus 515 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 551 (779)
.|-+.++|+++..+|+.+++.... |......++.+|
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 556666666666666666665433 444444444444
No 197
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=3.6e-08 Score=99.38 Aligned_cols=74 Identities=15% Similarity=0.424 Sum_probs=69.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||| +++|+.+|.+.|+++|.|.++++++| . | +-|||||.|.++++|.+|+..+ |...++|++|+|-|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d-~-t--slgy~yvnf~~~~da~~A~~~~--n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD-A-T--SLGYAYVNFQQPADAERALDTM--NFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeec-C-C--ccceEEEecCCHHHHHHHHHHc--CCcccCCcEEEeehh
Confidence 379999 99999999999999999999999999 5 5 9999999999999999999999 999999999999997
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
...
T Consensus 73 ~rd 75 (369)
T KOG0123|consen 73 QRD 75 (369)
T ss_pred ccC
Confidence 443
No 198
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=6.9e-06 Score=91.14 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=157.8
Q ss_pred HHHCCCCC-CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 004006 322 MRARGIEP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN 400 (779)
Q Consensus 322 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (779)
....++.| +...|..|+..|...+++++|.++.+..++.. +-....|..++..+...++..++..+ .
T Consensus 21 ~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------- 88 (906)
T PRK14720 21 ADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N--------- 88 (906)
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------
Confidence 33334444 44678889999988999999999998777753 22455566666677777776665544 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 004006 401 AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480 (779)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 480 (779)
++.......++.-...+...|.+. ..+..++..++.+|-+.|+.++|..+++++++.... |..+.|.+...
T Consensus 89 ------~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~ 159 (906)
T PRK14720 89 ------LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATS 159 (906)
T ss_pred ------hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHH
Confidence 223333334443334444444443 234457888899999999999999999999987633 78889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004006 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRA 560 (779)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 560 (779)
|... ++++|..++.+.... |...+++.++.+++.++....+. |...+..+.
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~------------ 210 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE------------ 210 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH------------
Confidence 9988 999999988877653 55666777888888877775332 222222222
Q ss_pred HHHHHHHHHc-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004006 561 IHIVKEMQKE-RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (779)
Q Consensus 561 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 622 (779)
+.+... +..--..++..+-..|-..++|++++.+++.+++.... |......++.+|.
T Consensus 211 ----~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 ----RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222221 11112334444555666777777777777777776544 4555555555554
No 199
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=4.2e-06 Score=77.05 Aligned_cols=160 Identities=12% Similarity=0.061 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004006 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL 659 (779)
Q Consensus 580 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 659 (779)
..+-..+...|+-+....+......... .|......++...++.|++.+|+..|++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4455566677777777777777654433 366677778888899999999999999988765 77888999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (779)
Q Consensus 660 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (779)
|+++.|..-|.+.++.. .-+...++.|...|.-.|+++.|..++....... .-|..+-..|..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999998875 3466778888888999999999999998887664 447777788888888999999999887
Q ss_pred HHHH
Q 004006 740 QQMK 743 (779)
Q Consensus 740 ~~m~ 743 (779)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6654
No 200
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=1.1e-06 Score=77.18 Aligned_cols=123 Identities=12% Similarity=-0.010 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 004006 266 HRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR 345 (779)
Q Consensus 266 a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (779)
-...|+++++.+|.+ +..+...+.+.|++++|+..|+.+..... .+...|..+..++...|
T Consensus 12 ~~~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 12 PEDILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHh
Confidence 346678888887752 33457778899999999999999988753 37788889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
++++|...|++..+.+. .+...+..+..++.+.|++++|+..|++..+..+. +...|.....
T Consensus 73 ~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~ 134 (144)
T PRK15359 73 EYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQN 134 (144)
T ss_pred hHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 99999999999998753 37888999999999999999999999999887543 4555544433
No 201
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.60 E-value=1.2e-07 Score=88.95 Aligned_cols=79 Identities=25% Similarity=0.283 Sum_probs=72.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeE--------EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
.+.+|||.|||.++|.+++.++|++||.|.. |++.++ . .|+.+|-|.+.|-..+++.-|+..| ++..|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~-~G~lKGDaLc~y~K~ESVeLA~~il--De~~~ 208 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-N-QGKLKGDALCCYIKRESVELAIKIL--DEDEL 208 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-C-CCCccCceEEEeecccHHHHHHHHh--Ccccc
Confidence 3458999999999999999999999999863 888887 3 4999999999999999999999999 99999
Q ss_pred eceEEEEEecC
Q 004006 222 HGRVLTVKLDD 232 (779)
Q Consensus 222 ~~~~~~v~~~~ 232 (779)
.|+.|+|+.|+
T Consensus 209 rg~~~rVerAk 219 (382)
T KOG1548|consen 209 RGKKLRVERAK 219 (382)
T ss_pred cCcEEEEehhh
Confidence 99999999874
No 202
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.1e-05 Score=74.36 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
..+-..+...|+-+.+..+........ ..|....+..++...+.|++.+|...|++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444555555666555555555543321 2244455556666666666666666666666543 33566666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
|++++|..-|.+..+.... +...++++...|.-.|+++.|..++......+ ..+..+-..+.......|+++.|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666666655333 45555566666666666666666665555543 224444445555555555555555544
Q ss_pred H
Q 004006 460 E 460 (779)
Q Consensus 460 ~ 460 (779)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 203
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=8.7e-06 Score=79.15 Aligned_cols=187 Identities=10% Similarity=-0.061 Sum_probs=133.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh--hhHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-M-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA--IIYG 405 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 405 (779)
....+..+...+...|++++|...|++++..... + ...++..++.+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 5567778888889999999999999999875321 1 1257788899999999999999999999987543222 2566
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 004006 406 NIIYAQCQT--------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCL 477 (779)
Q Consensus 406 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 477 (779)
.+..++.+. |+.++|.+.|+++.+.. +.+...+..+..... ... .+. .....+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 677777665 77889999999988763 222222222211110 000 000 112256
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 478 INLYTKIGKVSKALEVSKVMKSSGI--KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
...|.+.|++++|+..++......- ......+..+..++.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6789999999999999999987631 223578889999999999999999999988765
No 204
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=7.5e-06 Score=76.04 Aligned_cols=149 Identities=9% Similarity=0.148 Sum_probs=112.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
+-.|...|+++.+....+.+... . ..+...++.+++...++..++.+. .|...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 45788888888765554332211 0 012235677888888888877653 4788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQ-CQTRN--MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
++|+..|+++.+..+. +...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888655 778888888764 56676 488999999988875 556778888888888888888888888
Q ss_pred HHHHHCC
Q 004006 460 ERLKECG 466 (779)
Q Consensus 460 ~~~~~~g 466 (779)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 8888763
No 205
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=6.2e-08 Score=90.19 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=75.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+...+||||+.+.+|.++++..|+.||.|..+.|..| +.+|.++||+||+|.+.+.+..++. | ||..|.|+.+.|.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d-~~~~~~k~~~yvef~~~~~~~~ay~-l--~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKD-KFRGHPKGFAYVEFSSYELVEEAYK-L--DGSEIPGPAIEVT 175 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeecc-ccCCCcceeEEEecccHhhhHHHhh-c--CCcccccccceee
Confidence 3459999999999999999999999999999999999 8899999999999999999999998 7 9999999999998
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+.+-+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 86543
No 206
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=1.3e-05 Score=74.40 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHH
Q 004006 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG-YASLGD--TGKAFEY 668 (779)
Q Consensus 592 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~~ 668 (779)
.+++...++...+.... +...|..|...|...|++++|+..|++..... ..+...+..+..+ +...|+ .++|.++
T Consensus 55 ~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 33444444444433322 34444444444444444444444444444332 2233333333333 233333 2444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004006 669 FTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (779)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (779)
+++.++.+ +.+...+..+...+.+.|++++|...|+++.+
T Consensus 133 l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444443 22334444444444444444444444444443
No 207
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.54 E-value=2.5e-07 Score=85.58 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=74.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|+|.||++.|+++||+++|..||.++.+-+--| .+|++.|.|-|.|...++|.+|++.+ ||..++|+++++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~--~~G~s~Gta~v~~~r~~DA~~avk~~--~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD--RAGRSLGTADVSFNRRDDAERAVKKY--NGVALDGRPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccC--CCCCCCccceeeecchHhHHHHHHHh--cCcccCCceeeeEEe
Confidence 48999999999999999999999998888877665 67999999999999999999999999 999999999999987
Q ss_pred CCcchhh
Q 004006 232 DGRRLKN 238 (779)
Q Consensus 232 ~~~~~~~ 238 (779)
.+.....
T Consensus 160 ~~~~~~~ 166 (243)
T KOG0533|consen 160 SSPSQSK 166 (243)
T ss_pred cCccccc
Confidence 6665444
No 208
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6.8e-05 Score=69.09 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=76.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 004006 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK---- 518 (779)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 518 (779)
...|++.|++++|++...... +......=..++.+..+.+-|.+.+++|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345566666666666555421 22223233344555566666666666666532 44455545444443
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH-HHHHH
Q 004006 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM-KRALE 597 (779)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~ 597 (779)
.+.+.+|.-+|++|-++ ..|+..+.+.+..++...|++++|..+++........ +..+...++.+-...|.- +...+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHH
Confidence 24456666666666543 3445555555666666666666666666666655444 444444444333333332 22333
Q ss_pred HHHHHHH
Q 004006 598 IFDMMRR 604 (779)
Q Consensus 598 ~~~~~~~ 604 (779)
.+.+.+.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4444443
No 209
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=7.2e-05 Score=68.93 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=88.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 004006 584 HGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL---- 659 (779)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 659 (779)
..|++.+++++|++....... .+....+ +..+.+..+++-|...+++|.+. .+..|.+.|..++.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 346666777777666655211 1222222 33455666677777777777653 3556666666665432
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHH
Q 004006 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVW-EAADL 738 (779)
Q Consensus 660 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~ 738 (779)
+.+..|.-+|++|-+. ..|+..+.+...-++...|++++|..+++...... ..+..++..+|-.-...|.-. --.+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3466777777777654 35677777777777777777777777777776654 445666655555555555433 33445
Q ss_pred HHHHHH
Q 004006 739 MQQMKQ 744 (779)
Q Consensus 739 ~~~m~~ 744 (779)
+.++..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 555554
No 210
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1.4e-05 Score=70.19 Aligned_cols=91 Identities=12% Similarity=-0.114 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
+..++...|++++|...|+.++... +.+...|..+..++...|++++|...++++...+ +.+...+..++.++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444455555555555544443 2344444445555555555555555555554443 3444444555555555555
Q ss_pred HHHHHHHHHHHHH
Q 004006 732 VWEAADLMQQMKQ 744 (779)
Q Consensus 732 ~~~A~~~~~~m~~ 744 (779)
+++|+..|++.++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 211
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.6e-07 Score=94.45 Aligned_cols=70 Identities=23% Similarity=0.435 Sum_probs=63.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
+.++|+|-|||..|++++|+++|+.||+|++|+.- -..+|..||+|-+..+|++|+++| |+..+.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t------~~~~~~~~v~FyDvR~A~~Alk~l--~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET------PNKRGIVFVEFYDVRDAERALKAL--NRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc------cccCceEEEEEeehHhHHHHHHHH--HHHHhhhhhhc
Confidence 44699999999999999999999999999996443 344899999999999999999999 99999999999
No 212
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.47 E-value=4.6e-07 Score=93.13 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=73.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCC--CCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN--FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
..+.++|||||++.++++.|...|.+||+|..++|+--+.. ..+.+.||||.|-+..++++|++.| +|..+.+..+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~l--qg~iv~~~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKEL--QGIIVMEYEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHh--cceeeeeeee
Confidence 34569999999999999999999999999999999875222 2455789999999999999999999 9999999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
++.|++..
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998543
No 213
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=7.7e-08 Score=83.91 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=70.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||+|+...++++.|.++|-+.|+|..|.|..+ + .++.| ||||+|.++-++.-|++.+ ||..+.++.+.|.+.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~-d~~~k-Fa~v~f~~E~sv~~a~~L~--ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-Q-DQEQK-FAYVFFPNENSVQLAGQLE--NGDDLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-c-cCCCc-eeeeecccccchhhhhhhc--ccchhccchhhcccc
Confidence 39999999999999999999999999999988876 3 36666 9999999999999999999 999999999999875
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
.+.
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 443
No 214
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.1e-07 Score=57.59 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 746 GVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 746 g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555555
No 215
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=6.4e-05 Score=83.06 Aligned_cols=136 Identities=13% Similarity=-0.002 Sum_probs=106.0
Q ss_pred CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (779)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (779)
...+...+-.|..+....|.+++|+.+++...+... -+...+..++..+.+.+++++|+..+++.....+. +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 344577778888888888888888888888887532 24667777888888888888888888888877655 7777778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
+..++.+.|++++|.++|+++...+ +.+..++..+...+...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888743 445777888888888888888888888887764
No 216
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.44 E-value=0.0024 Score=63.48 Aligned_cols=83 Identities=10% Similarity=0.208 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..||..|..+|.+++.++++++|..- ..--..+|..-+++-...+++.....+|.+.+..- .+...|..-+.
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~ 117 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLE 117 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHH
Confidence 6677999999999999999999999999754 23345688888888778899999999999988763 45777777776
Q ss_pred HHHccC
Q 004006 375 GFAKMG 380 (779)
Q Consensus 375 ~~~~~g 380 (779)
-..+.+
T Consensus 118 YIRr~n 123 (660)
T COG5107 118 YIRRVN 123 (660)
T ss_pred HHHhhC
Confidence 555443
No 217
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=2.8e-07 Score=57.05 Aligned_cols=32 Identities=34% Similarity=0.663 Sum_probs=18.5
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 004006 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (779)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (779)
|+.||..||++|+++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 218
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=4e-05 Score=76.92 Aligned_cols=118 Identities=11% Similarity=0.097 Sum_probs=70.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
..|++++|+..++.++.. .+-|...+......+.+.++..+|.+.|+++....+. ....+..+..+|.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 456666666666666554 2334555555566666666666666666666665333 25555566666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 423 LVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
++++..... +.|...|..|..+|...|+..++....-+..
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666665553 4556666666666666666666655554443
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.40 E-value=0.0031 Score=62.96 Aligned_cols=443 Identities=11% Similarity=0.120 Sum_probs=216.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HH
Q 004006 306 YARRGDMHRARQTFENMRARGIEPT------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--FA 377 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~ 377 (779)
+-+++++.+|.++|.+....- ..+ ....+.+|++|.. ++++.....+..+.+.- + ...|..+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 347789999999999987752 222 2345678888864 56777666666665532 2 2334444433 45
Q ss_pred ccCCHHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCChhhH
Q 004006 378 KMGNAEAADHWFEEAKER--HATL------------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI----DAPIDIY 439 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~ 439 (779)
+.+.+.+|++.|....+. +..+ |...-+..+.++.+.|++.++..+++++...=. ..+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999988877664 2111 112223445666788888888888887776433 3677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPSI-ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (779)
+.++-++.+ ..|-++.+. ..-|. .-|-.|+..|.+.=+.-++.. | ..+-|.......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~-~s~dl~pdyYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKES-MSSDLYPDYYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHh-cccccChHHHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHHh
Confidence 776655543 234444332 11111 123344444433211111100 0 0112222223333322221
Q ss_pred c--CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCcccHHHHHHHHHhcCC
Q 004006 519 L--KDWANVFAVFEDVMRDGLKPDV-VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR----PTSRTFMPIIHGFARAGE 591 (779)
Q Consensus 519 ~--~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 591 (779)
. .+..--.++++...+.-+.|+. .+...|+..+.+ +.+++..+.+.+....+. --..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111112222222222233332 122333333333 334444333333222110 012345555556666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh-c---CCHHHHHHHHHHHHHCCCCCCHH-HHHHH---HHHH
Q 004006 592 MKRALEIFDMMRRSGCIPTVHTF-------NALILGLVE-K---RQMEKAIEILDEMTLAGISPNEH-TYTTI---MHGY 656 (779)
Q Consensus 592 ~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~-~---~~~~~A~~~~~~m~~~~~~~~~~-~~~~l---i~~~ 656 (779)
...|.+.+..+.-... +...- ..+.+..+. - -+..+=+.+|++....++ |.. .-..| ..-+
T Consensus 314 T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 314 TEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHL 389 (549)
T ss_pred HHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHH
Confidence 6666666665554322 21111 111122221 0 112222334444444332 221 11122 2334
Q ss_pred HhcCC-HHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHc---CChHHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 004006 657 ASLGD-TGKAFEYFTKLRNEGLELDVFTYEA----LLKACCKS---GRMQSALAVTKEMSAQKIPR----NTFVYNILID 724 (779)
Q Consensus 657 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~---g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~ 724 (779)
.+.|. -++|+++++.++... .-|...-|. +=.+|..+ ..+.+-..+-+-+.+.|+.+ +...-|.|.+
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 55555 677777777777643 223322222 22233221 22333333333444556554 2334455555
Q ss_pred H--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 725 G--WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 725 ~--~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+ +...|++.++.-.-..+.+ +.|...+|..++-+.....++++|+.++.++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4 5567787777766666655 6777778877777777777888888877765
No 220
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00018 Score=72.37 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=85.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTGK 664 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~ 664 (779)
+...|++++|+..++.+++..+. |...+......+.+.++..+|.+.++++... .|+ ....-.+..+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 44556666666666666554332 4555555556666666666666666666654 233 3444555566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 665 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
|+.+++...... +.|...|..|.++|...|+..++.....+ .|+..|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 666666666553 45666666677777666666655544332 34556666666666666665
Q ss_pred cCCCCCHHHH
Q 004006 745 EGVQPDVHTY 754 (779)
Q Consensus 745 ~g~~pd~~~~ 754 (779)
. .+.+..+|
T Consensus 454 ~-~~~~~~~~ 462 (484)
T COG4783 454 Q-VKLGFPDW 462 (484)
T ss_pred h-ccCCcHHH
Confidence 4 33343333
No 221
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=1.9e-05 Score=68.97 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=82.8
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChH
Q 004006 269 EFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDME 348 (779)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (779)
.|.+++..+|. +......+...+.+.|++++|+..|+.+...+. .+...|..+..++.+.|+++
T Consensus 5 ~~~~~l~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 5 TLKDLLGLDSE---------------QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hHHHHHcCChh---------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH
Confidence 46667777665 334455677778888888888888888877642 36677778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 349 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+|..+++..++.+ +.+...+..+..+|...|++++|+..|++..+..
T Consensus 69 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 69 EAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 8888888877764 3367777778888888888888888888877764
No 222
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00022 Score=78.89 Aligned_cols=133 Identities=12% Similarity=0.131 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (779)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 619 (779)
+...+..|..+..+.|.+++|..+++.+....+. +...+..++..+.+.+++++|+..+++....... +....+.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 4666666777777777777777777777766544 4555566666677777777777777777665543 5556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 675 (779)
++.+.|++++|+.+|+++...+ .-+..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777777777776632 334566666777777777777777777777665
No 223
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=3.4e-05 Score=67.41 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
.....+...+...|++++|...|+++...+ +.+...+..+..+|...|++++|..++++..+.+ +.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 445555566666777777777777776654 3466666777777777777777777777766654 45566666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 727 ARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (779)
...|++++|++.+++.++. .|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 7777777777777777663 3444443
No 224
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00067 Score=62.26 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=128.8
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 004006 520 KDWANVFAVFEDVMRD---G-LKPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKR 594 (779)
Q Consensus 520 ~~~~~a~~~~~~~~~~---g-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 594 (779)
.+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++.+...-+. +...-..-...+.-.|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhh
Confidence 4555666666555432 2 333433 3445555666788888888888888776532 22222222223556788899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 595 ALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 595 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
|+++++.+++.+.. |..++-.-+...-..|+--+|++-+.+..+. +..|...|..+...|...|++++|.-++++++-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999888887643 6666666666666667767888888887765 467888899999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCC
Q 004006 675 EGLELDVFTYEALLKACCKSG---RMQSALAVTKEMSAQK 711 (779)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 711 (779)
.. +-+...+..+.+.+.-.| +++.|.+++.+.++.+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 65 456667777777766555 4677888888888764
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.25 E-value=0.007 Score=60.53 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=83.5
Q ss_pred hhcccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004006 245 RWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRA 324 (779)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (779)
+++..|.|++ ..|-++|.++......+-- + |+ -...-+.++++|...+ .+.....+..+.+
T Consensus 13 gf~Lqkq~~~---------~esEkifskI~~e~~~~~f-~---lk-----eEvl~grilnAffl~n-ld~Me~~l~~l~~ 73 (549)
T PF07079_consen 13 GFILQKQKKF---------QESEKIFSKIYDEKESSPF-L---LK-----EEVLGGRILNAFFLNN-LDLMEKQLMELRQ 73 (549)
T ss_pred hHHHHHHhhh---------hHHHHHHHHHHHHhhcchH-H---HH-----HHHHhhHHHHHHHHhh-HHHHHHHHHHHHH
Confidence 4456666776 8899999998865432100 0 00 0122345677776443 4444444444444
Q ss_pred CCCCCCHhhHHHHHHH--HHccCChHHHHHHHHHHHHc--CCC------------CCHhHHHHHHHHHHccCCHHHHHHH
Q 004006 325 RGIEPTLHVYTNLIHA--YAVGRDMEEALSCVRKMKEE--GIE------------MSLVTYSIIVGGFAKMGNAEAADHW 388 (779)
Q Consensus 325 ~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~--g~~------------~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (779)
.. + ...|-.+..+ +.+.+.+.+|++.+..-.+. +.. .|.+.=++.+.++.+.|++.+++.+
T Consensus 74 ~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 74 QF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred hc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 31 1 2333333333 33567888888777655443 111 1223345667778888888888888
Q ss_pred HHHHHHc----CCCCChhhHHHHHHHHHh
Q 004006 389 FEEAKER----HATLNAIIYGNIIYAQCQ 413 (779)
Q Consensus 389 ~~~~~~~----~~~~~~~~~~~l~~~~~~ 413 (779)
++++..+ ....+..+|+.++..+.+
T Consensus 151 Ln~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 151 LNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 8777654 344778888876655543
No 226
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0034 Score=57.79 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=68.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (779)
..++-+....|+.+-|..+++.+... ++-+..+-..-...+--.|.+++|+++|+.+.+.++. |..++..-+.+.-..
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHc
Confidence 33333444444555555555544433 2212222222222233344555555555555544322 444444444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC---CHHHHH
Q 004006 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG---KVSKAL 491 (779)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~ 491 (779)
|+.-+|++-+.+..+. +..|...|..+.+.|...|++++|.-.++++.-... -+...+..+.+.+.-.| +++.+.
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP-FNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444443 234445555555555555555555555555444311 12333333443332222 334445
Q ss_pred HHHHHHHHC
Q 004006 492 EVSKVMKSS 500 (779)
Q Consensus 492 ~~~~~m~~~ 500 (779)
++|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 555554443
No 227
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.001 Score=65.45 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=54.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 586 FARAGEMKRALEIFDMMRRSG---CIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDT 662 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 662 (779)
..+.|.+.+|.+.|.+.+... ..++...|........+.|+..+|+.--++..+.+ .--...|..-..++...+++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHH
Confidence 456777888888887777643 23445556666666677777777777766665432 00112233333445566777
Q ss_pred HHHHHHHHHHHHcC
Q 004006 663 GKAFEYFTKLRNEG 676 (779)
Q Consensus 663 ~~a~~~~~~~~~~~ 676 (779)
++|.+-|++..+..
T Consensus 338 e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHhhc
Confidence 77777777776653
No 228
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.18 E-value=1.3e-06 Score=87.81 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=72.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..++|+--+...+++.+|+++|+.+|.|.+|+||.| +.+++++|.++|+|.+.+++..|| +| .|..+.|.+|.|..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aL--sGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-AL--SGQRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc-ccchhhcceeEEEEecccchhhHh-hh--cCCcccCceeEecc
Confidence 349999999999999999999999999999999999 999999999999999999999999 56 89999999999986
Q ss_pred c
Q 004006 231 D 231 (779)
Q Consensus 231 ~ 231 (779)
.
T Consensus 255 s 255 (549)
T KOG0147|consen 255 S 255 (549)
T ss_pred c
Confidence 4
No 229
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.17 E-value=2.2e-05 Score=76.28 Aligned_cols=280 Identities=17% Similarity=0.135 Sum_probs=127.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HC--CCC-CCHHHHHHHHHH
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIK---HNMKTYSMLINGFLKLKDWANVFAVFEDVM--RD--GLK-PDVVLYNNIIRA 550 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~l~~~ 550 (779)
.-+++.|+......+|+..++.|-. .-..+|+.|.++|.-.++|++|+++...=+ .. |-+ -..-....|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4578899999999999998887632 113456677788888888888887654311 10 100 011223334444
Q ss_pred HHhCCCHHHHHHHHHH----HHHcCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHh
Q 004006 551 FCGMGNMDRAIHIVKE----MQKERHR-PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI-P-TVHTFNALILGLVE 623 (779)
Q Consensus 551 ~~~~g~~~~A~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~ 623 (779)
+--.|.+++|+....+ ..+.|-. .....+..|...|...|+-- |+. | +...++.-+.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~------------g~~~pee~g~f~~ev~---- 168 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCT------------GLEAPEEKGAFNAEVT---- 168 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccccc------------CCCChhhcccccHHHH----
Confidence 4455566665543222 1222211 12223333334443322210 000 0 0000000000
Q ss_pred cCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHH
Q 004006 624 KRQMEKAIEILDEMT----LAGIS-PNEHTYTTIMHGYASLGDTGKAFEYFTKLR----NEGLE-LDVFTYEALLKACCK 693 (779)
Q Consensus 624 ~~~~~~A~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~ 693 (779)
..++.|.++|.+-+ ..|-. .-...|..|...|.-.|+++.|+...+.=+ +.|-+ .....+..|..++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 00222333333211 11100 011234444455555566666665554322 22211 123345556666666
Q ss_pred cCChHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHh
Q 004006 694 SGRMQSALAVTKEMSA----QK-IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ----EG-VQPDVHTYTSFINACKC 763 (779)
Q Consensus 694 ~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g-~~pd~~~~~~l~~a~~~ 763 (779)
.|+++.|.+.++.... .| -.....+..+|.+.|.-..++++|+.++.+-+. .+ ..-....+-+|.+++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 6666666666554432 11 012223445566666666666666666554321 11 11133455566666666
Q ss_pred cCCcchHHHhHh
Q 004006 764 SKSNQRNGRSWS 775 (779)
Q Consensus 764 ~g~~~~a~~~~~ 775 (779)
.|..++|..+.+
T Consensus 328 lg~h~kAl~fae 339 (639)
T KOG1130|consen 328 LGEHRKALYFAE 339 (639)
T ss_pred hhhHHHHHHHHH
Confidence 666666665543
No 230
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.16 E-value=1.5e-05 Score=62.40 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=67.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhc--cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee----ceE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQ--FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH----GRV 225 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~----~~~ 225 (779)
++|-|.|+|...|.++|.+++.. .|...-+.+..| ..++.+.|||||-|.+.+.+.+-.+.+ +|.... .|.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD-f~~~~N~GYAFVNf~~~~~~~~F~~~f--~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID-FKNKCNLGYAFVNFTSPQAAIRFYKAF--NGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee-ccCCCceEEEEEEcCCHHHHHHHHHHH--cCCccccCCCCcE
Confidence 48999999999999999988864 367777888888 888999999999999999999999999 999874 666
Q ss_pred EEEEecC
Q 004006 226 LTVKLDD 232 (779)
Q Consensus 226 ~~v~~~~ 232 (779)
+.|.+|+
T Consensus 79 c~i~yAr 85 (97)
T PF04059_consen 79 CEISYAR 85 (97)
T ss_pred EEEehhH
Confidence 7777763
No 231
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.15 E-value=0.00029 Score=70.13 Aligned_cols=200 Identities=16% Similarity=0.213 Sum_probs=87.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEP-T----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.+.|-..|++++|...|.+........ + ...|.....+|.+. ++++|.+.+++.. ..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~---------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI---------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------HHHH
Confidence 455556666777766666654321100 0 01223333333222 5555555444433 3455
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCC
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RNMERAEALVRDMEEE----GID-APIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 451 (779)
+.|++..|-+++.++- ..|.+. |++++|++.|++..+. +.. .-...+..+...+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 5555555555444432 234444 5566666655555432 100 001233444555666666
Q ss_pred HHHHHHHHHHHHHCCCCC-----CHh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHh--c
Q 004006 452 EEKCLIVFERLKECGFSP-----SII-SYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHN--MKTYSMLINGFLK--L 519 (779)
Q Consensus 452 ~~~a~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~--~~~~~~ll~~~~~--~ 519 (779)
+++|+++|+++...-..- +.. .|-..+-++...|+...|.+.++...... +..+ ......||.+|-. .
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 666666666665432111 111 12223334455566666666666655431 2111 2233444455433 2
Q ss_pred CCHHHHHHHHHHHH
Q 004006 520 KDWANVFAVFEDVM 533 (779)
Q Consensus 520 ~~~~~a~~~~~~~~ 533 (779)
..+++++.-|+.+.
T Consensus 251 e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 251 EAFTEAVAEYDSIS 264 (282)
T ss_dssp CCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcccC
Confidence 34455555554443
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=0.005 Score=64.56 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSA-QKIPRNTFVYNILIDGWARRGDVWEAAD 737 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 737 (779)
..+.|..|.+--...|+++.|++.--.+.+ .++-|-..+|+.|.-+-+....+.-.-+
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 455666666667778888888776544443 2455667777766655554444433333
No 233
>PHA03247 large tegument protein UL36; Provisional
Probab=98.14 E-value=5.6e-05 Score=89.58 Aligned_cols=9 Identities=11% Similarity=0.645 Sum_probs=4.4
Q ss_pred ccCCCcCCh
Q 004006 157 GNLPNWIKK 165 (779)
Q Consensus 157 ~~l~~~~~~ 165 (779)
..++.|+++
T Consensus 3002 ~~~~~w~~~ 3010 (3151)
T PHA03247 3002 SRVSSWASS 3010 (3151)
T ss_pred CCcchhhhh
Confidence 445555544
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=0.0046 Score=64.83 Aligned_cols=345 Identities=12% Similarity=0.110 Sum_probs=188.1
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH----------HHhcCChHHHHHHHHHHHHcCC
Q 004006 363 EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA----------QCQTRNMERAEALVRDMEEEGI 432 (779)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~ 432 (779)
.|....|..|...-.+.-.++.|+..|-+...-. -......|... -.--|.+++|+++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 3677888888888777778888888877664321 11111111111 122488899999888887764
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004006 433 DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKT 508 (779)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 508 (779)
..+..+.+.|++-....++. .-|-..| ...|+.+...+.....+++|.++|..-..
T Consensus 765 --------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 24566777888766555443 2221112 34688888888888888888888865432
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 004006 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588 (779)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (779)
....+.+|.+..++++...+...+.+ |....-.+..++.+.|.-++|.+.|-+.-. . ...+..|..
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~ 890 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVE 890 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHH
Confidence 12356666667777776666555433 555667788889999999998887754321 1 244567788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 004006 589 AGEMKRALEIFDMMRRSGCIPTVHTFN--------------ALILGLVEKRQMEKAIEILDEMTLA----GISPNEHTYT 650 (779)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~ 650 (779)
.++|.+|.++-+...- |.+.+.- .-|..+.+.|+.-+|.+++.+|.+. +.++-..--.
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 8888888877655432 2222221 1233444555555566666665432 2222111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
.++.++. ..+..++.+-.++....|..-+... +...|-+.++-++.+..-. -....+|-.|..--...|
T Consensus 967 YVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 967 YVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhc
Confidence 1121211 1222333333333333443222211 1223333333333332211 122334444555566788
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 004006 731 DVWEAADLMQQMKQE-GVQPDVHTYTSFINA 760 (779)
Q Consensus 731 ~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~a 760 (779)
..+.|++.--.+.+. .+-|...+|..|.-+
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 999888865555432 355666677655443
No 235
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=7.7e-05 Score=76.04 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.....|++.+...++++.|+++|+++.+.. |+ ....|+..+...++-.+|++++++..+.... +.......+..+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444555555566666666666665542 22 3334555555556666666666666554322 444444555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
.+.++++.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666666666652 3445566666666666666666666665543
No 236
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=7.3e-05 Score=76.18 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=100.8
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (779)
+...-..|+..+...++++.|+++|+++.+.. ......++.++...++..+|++++.+..+.. +.+...+.....
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444556677777888999999999998874 3345567788888888889999998888763 556777777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
.+.+.++++.|+++.+++.+.... +..+|..|..+|.+.|+++.|+-.++.+--
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888999999999999998886322 456899999999999999999988887654
No 237
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00055 Score=67.23 Aligned_cols=156 Identities=9% Similarity=-0.043 Sum_probs=91.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAG---ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (779)
+-.++.|++.+|.+.|.+.+..+ +.++...|.....+..++|+.++|+.--++.++.. .--...|..-..++...+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHH
Confidence 44678899999999999988543 45666778888888889999999999888887753 111223333345566678
Q ss_pred ChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCcchHH
Q 004006 696 RMQSALAVTKEMSAQKIP-RNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC---KCSKSNQRNG 771 (779)
Q Consensus 696 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~---~~~g~~~~a~ 771 (779)
.|++|.+-+++.....-. ....++.-...++.+..+.+ =.+++--.......++...|..+.-++ ..+|...+|.
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE 414 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAE 414 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHH
Confidence 899999999888764311 12234443344444333311 112222222222234445554333222 2245556666
Q ss_pred HhHhh
Q 004006 772 RSWSE 776 (779)
Q Consensus 772 ~~~~~ 776 (779)
..|++
T Consensus 415 ~kFke 419 (486)
T KOG0550|consen 415 AKFKE 419 (486)
T ss_pred HHHHH
Confidence 66654
No 238
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=1.8e-06 Score=88.21 Aligned_cols=83 Identities=29% Similarity=0.537 Sum_probs=77.6
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...+++|||+||...++..+.++...||.++..+++.| ..+|-++||+|.+|.+..-...|++.+ ||..++++.+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d-~~~g~skg~af~ey~dpsvtd~A~agL--nGm~lgd~~lvv 363 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD-SATGNSKGFAFCEYCDPSVTDQAIAGL--NGMQLGDKKLVV 363 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecc-cccccccceeeeeeeCCcchhhhhccc--chhhhcCceeEe
Confidence 34459999999999999999999999999999999999 888999999999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
..|...
T Consensus 364 q~A~~g 369 (500)
T KOG0120|consen 364 QRAIVG 369 (500)
T ss_pred ehhhcc
Confidence 987554
No 239
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.07 E-value=1.5e-05 Score=70.19 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=54.6
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
+...+|||.||..++||++|+.+|+.|..+..++|-.. .| -..+|++|++.+.|..|+..| +|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~g--~~vaf~~~~~~~~at~am~~l--qg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---GG--MPVAFADFEEIEQATDAMNHL--QGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---CC--cceEeecHHHHHHHHHHHHHh--hccee
Confidence 33448999999999999999999999998887777432 23 348999999999999999888 88766
No 240
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.0002 Score=63.16 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=11.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+...+...|++++|...|+.+...
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh
Confidence 334444444444444444444443
No 241
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00038 Score=61.37 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChH
Q 004006 624 KRQMEKAIEILDEMTLAGISPN---EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQ 698 (779)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 698 (779)
.++...+...++.+.... ..+ ....-.+...+...|++++|...|+.+.+....+. ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555566655666655542 111 12222334555566666666666666665541111 123344555566666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+|+..++..... ......+..++++|.+.|++++|+..|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666553222 23334455566666666666666666654
No 242
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.97 E-value=1e-05 Score=75.88 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=67.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccC--CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.++|||||-|++|++||.+....-| .|.++++..+ +.+|++||||.|...+..++++.++.| --+.|+|+.=.|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN-R~NGQSKG~AL~~~~SdAa~Kq~MeiL--P~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN-RTNGQSKGYALLVLNSDAAVKQTMEIL--PTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc-ccCCcccceEEEEecchHHHHHHHHhc--ccceecCCCCeee
Confidence 3899999999999999999988776 5778888888 889999999999999999999999999 8889998876664
No 243
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.96 E-value=0.00017 Score=70.40 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=75.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCChHHHHHHHHHH--HH--cCCC-CCHhHHHHHH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLH----VYTNLIHAYAVGRDMEEALSCVRKM--KE--EGIE-MSLVTYSIIV 373 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~-~~~~~~~~l~ 373 (779)
..-+++.|+.+..+.+|+.+++-|-. |.. +|..|.++|.-.++|++|++....= +. .|-. -...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45688999999999999999998743 443 4777788888889999999875431 11 1101 1344556677
Q ss_pred HHHHccCCHHHHHHHHHHH----HHcCC-CCChhhHHHHHHHHHhcCC
Q 004006 374 GGFAKMGNAEAADHWFEEA----KERHA-TLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~ 416 (779)
+.+.-.|.|++|+-+..+- .+.|- .....+++.+..+|...|+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 7788888999887654432 22221 1234567778888876554
No 244
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.90 E-value=3.9e-05 Score=61.98 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=48.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC---CceeeceEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD---GVEFHGRVLT 227 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~---g~~~~~~~~~ 227 (779)
++-|+|.+++..++-++|++.|++||.|..|.+.++ ..-|||-|.+.++|+.|+..+... +..+.+..++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 357889999999999999999999999999999876 458999999999999999998666 6677787777
Q ss_pred EEec
Q 004006 228 VKLD 231 (779)
Q Consensus 228 v~~~ 231 (779)
+..-
T Consensus 74 ~~vL 77 (105)
T PF08777_consen 74 LEVL 77 (105)
T ss_dssp EE--
T ss_pred EEEC
Confidence 7654
No 245
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.90 E-value=0.00072 Score=58.28 Aligned_cols=91 Identities=7% Similarity=-0.114 Sum_probs=44.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
.+...+...|++++|+.+|+.+...++. +...|..|..++-..|++++|++.|......+ +.+...+..+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3334444455555555555555544333 44455555555555555555555555555444 234444444455555555
Q ss_pred CHHHHHHHHHHHH
Q 004006 451 NEEKCLIVFERLK 463 (779)
Q Consensus 451 ~~~~a~~~~~~~~ 463 (779)
+.+.|++.|+..+
T Consensus 118 ~~~~A~~aF~~Ai 130 (157)
T PRK15363 118 NVCYAIKALKAVV 130 (157)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 246
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.89 E-value=3.1e-05 Score=77.03 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=64.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.-|-+.+|||.+|++||.++|+.++ |+.+.+. +.+||..|-|||+|.+++++++|++. +...++.|.|.|--+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~---r~~Gr~sGeA~Ve~~seedv~~Alkk---dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIP---RRNGRPSGEAYVEFTSEEDVEKALKK---DRESMGHRYIEVFTA 83 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEe---ccCCCcCcceEEEeechHHHHHHHHh---hHHHhCCceEEEEcc
Confidence 4677789999999999999999976 5666665 45799999999999999999999976 788999999998655
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
...
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 433
No 247
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.87 E-value=0.00087 Score=66.99 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=11.7
Q ss_pred eccCCCcCChHHHHHHHhccCCeeEE
Q 004006 156 VGNLPNWIKKHLVMEFFRQFGPIKNV 181 (779)
Q Consensus 156 v~~l~~~~~~~~l~~~f~~~g~i~~~ 181 (779)
...|+..-..++|..-..+-|.++.|
T Consensus 486 ~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 486 TTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred eccCcCcccHHHHHHHHHhccccccc
Confidence 33444333444554444444555443
No 248
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.86 E-value=3e-05 Score=48.87 Aligned_cols=33 Identities=45% Similarity=0.827 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 718 VYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (779)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (779)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
No 249
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.83 E-value=0.00049 Score=70.74 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=54.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 004006 618 ILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRM 697 (779)
Q Consensus 618 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (779)
...+...|++++|+.+|+++++.+ ..+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344555666666666666666543 3344555556666666666666666666666554 33555566666666666666
Q ss_pred HHHHHHHHHHHhCC
Q 004006 698 QSALAVTKEMSAQK 711 (779)
Q Consensus 698 ~~A~~~~~~~~~~~ 711 (779)
++|+..|+++.+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666665543
No 250
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.0003 Score=72.04 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004006 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE--GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYN 720 (779)
Q Consensus 643 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 720 (779)
..+...+..+++.+....+.+.+..++-+.+.. ....-..|..++++.|.+.|..++++.+++.=...||-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 455566666677766666677777777776654 222223344577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
.|++.+.+.|++..|.++..+|...+.-.+..|+...+.+|++-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777666555555666666666666554
No 251
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.00041 Score=59.75 Aligned_cols=97 Identities=6% Similarity=-0.129 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.....+...+...|++++|..+|+-+...+. .+..-|..|..++-..|++++|+..|.++...++. |...+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 3444555555667777777777777766542 25666777777777777777777777777777654 777777777777
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 004006 412 CQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~ 430 (779)
...|+.+.|++.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7778877777777776654
No 252
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=3.6e-05 Score=60.38 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=40.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIE-PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
+|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|+.++++ .+.+. .+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566666666666655321 1223344455666666666666666655 22211 122333444555666666666666
Q ss_pred HHHH
Q 004006 388 WFEE 391 (779)
Q Consensus 388 ~~~~ 391 (779)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 253
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0016 Score=64.90 Aligned_cols=167 Identities=17% Similarity=0.266 Sum_probs=88.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 338 IHAYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+.|...|++++|.+.|.+..+. +-.. -...|.....+|.+. ++++|++.|+++. ..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~---------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI---------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------HHHH
Confidence 34556667777777777665431 1000 112233333333333 6666665555543 4567
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCC
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIGK 486 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~ 486 (779)
..|++..|-+++.++- ..|... |++++|++.|.+..+. |..- -..++..++..+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 7777777766665543 455566 7888888888776542 2100 12345566777778888
Q ss_pred HHHHHHHHHHHHHCCCCCC-----HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 487 VSKALEVSKVMKSSGIKHN-----MK-TYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
+++|.++|+++.......+ .. .|-..+-++...||...|...|++....
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888877765432211 11 1222333445567777777777776544
No 254
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.0076 Score=58.05 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHV---YTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
+......+.+.|++++|++.|+.+...... +... .-.++.++.+.+++++|...|++.++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444444555555555555555554211 1111 123344455555555555555555543
No 255
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.80 E-value=7e-05 Score=67.02 Aligned_cols=73 Identities=21% Similarity=0.427 Sum_probs=66.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEEEEe
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~v~~ 230 (779)
..+|+.|||.+++.+.+..+|.+|+..++++++.. + +|.+||+|.+...+..|...+ +|..+. ...++|.+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-~-----~~iAfve~~~d~~a~~a~~~l--q~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-R-----SGIAFVEFLSDRQASAAQQAL--QGFKITKKNTMQITF 218 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-C-----CceeEEecchhhhhHHHhhhh--ccceeccCceEEecc
Confidence 48999999999999999999999999999999975 2 689999999999999999999 999986 88888887
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
No 256
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.79 E-value=0.00034 Score=71.64 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=109.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 282 QAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR--GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
..+...|.+....+.....++++.+....+.+++..++-+.... ....-..+.+++++.|.+.|..++++++++.=+.
T Consensus 52 ~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~ 131 (429)
T PF10037_consen 52 SELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ 131 (429)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh
Confidence 34455566666778888888999998888899999999988775 2222335678999999999999999999999999
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 360 EGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 360 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (779)
.|+-||.++++.|++.+.+.|++..|.++...|..++...+..++...+.+|.+.
T Consensus 132 yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 132 YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998887766777776666666655
No 257
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00035 Score=55.52 Aligned_cols=80 Identities=16% Similarity=0.319 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHhHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGR--------DMEEALSCVRKMKEEGIEMSLVTY 369 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~ 369 (779)
....|..+...|++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34467777778999999999999999999 899999999999987653 344678899999999999999999
Q ss_pred HHHHHHHHc
Q 004006 370 SIIVGGFAK 378 (779)
Q Consensus 370 ~~l~~~~~~ 378 (779)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
No 258
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.76 E-value=0.015 Score=56.06 Aligned_cols=67 Identities=6% Similarity=-0.057 Sum_probs=43.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT---YSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
...+-.....+.+.|++++|.+.|++++..-.. +... ...++.+|.+.+++++|+..|++..+..+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 333434444555678888888888888775322 2222 245667777888888888888888776544
No 259
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00043 Score=55.79 Aligned_cols=94 Identities=27% Similarity=0.214 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+..+...+...|++++|+..|+++.+... .+..++..+..++...+++++|.+.|+...+... .+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 44456666677777777777777766532 2335566666666666777777777776666432 244566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKE 394 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~ 394 (779)
.|++++|...|.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666666554
No 260
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.75 E-value=0.00083 Score=56.97 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIV 373 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~ 373 (779)
++..++..+.+.|++++|++.|+.+...... .....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666667777777777766654211 01234555666666666666666666666653211 1134455566
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.++.+.|++++|+..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666553
No 261
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.75 E-value=8.5e-05 Score=54.73 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=47.7
Q ss_pred eEEeccCCCcCChHH----HHHHHhccCC-eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 153 KIFVGNLPNWIKKHL----VMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~----l~~~f~~~g~-i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
-|+|.|||.+.+... |++++..||. |.+| . .|.|+|-|.+.+.|.+|.+.| +|-.+-|++|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---------~~tAilrF~~~~~A~RA~KRm--egEdVfG~kI~ 70 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---------GGTAILRFPNQEFAERAQKRM--EGEDVFGNKIS 70 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHH--TT--SSSS--E
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---------CCEEEEEeCCHHHHHHHHHhh--cccccccceEE
Confidence 689999999888765 4677778875 4443 1 589999999999999999999 99999999999
Q ss_pred EEecC
Q 004006 228 VKLDD 232 (779)
Q Consensus 228 v~~~~ 232 (779)
|++..
T Consensus 71 v~~~~ 75 (90)
T PF11608_consen 71 VSFSP 75 (90)
T ss_dssp EESS-
T ss_pred EEEcC
Confidence 99873
No 262
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.01 Score=54.86 Aligned_cols=133 Identities=10% Similarity=0.089 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-----hhHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA-----IIYGN 406 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~ 406 (779)
.+.+.++.++.-.|.|.-.+.++.+.++...+.+......|++.-.+.|+.+.|...|++..+.....|. .+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556666777777777777777777777665666777777777777777777777777766543222222 22333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
....|...+++.+|...+.++...+ +.+....|.-.-+....|+..+|++.++.|++.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455555666666665555543 233333344444444455555555555555543
No 263
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.74 E-value=2.6e-05 Score=74.66 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=75.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCee--------EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
....++||-+|+..++++++..+|.+||.|+ .|.|-+| +.|++.||-|-|+|++...|++|+.-+ ++..
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~d-keT~~~KGeatvS~~D~~~akaai~~~--agkd 140 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTD-KETGAPKGEATVSYEDPPAAKAAIEWF--AGKD 140 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccc-ccccCcCCceeeeecChhhhhhhhhhh--cccc
Confidence 3345999999999999999999999999985 3778888 799999999999999999999999999 9999
Q ss_pred eeceEEEEEecCCcc
Q 004006 221 FHGRVLTVKLDDGRR 235 (779)
Q Consensus 221 ~~~~~~~v~~~~~~~ 235 (779)
++|..|+|..+..+.
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999998876554
No 264
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=6.5e-05 Score=46.88 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 717 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (779)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 265
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.73 E-value=5.7e-05 Score=47.54 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=16.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS 365 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 365 (779)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555444443
No 266
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=6.4e-05 Score=58.99 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
.|++++|+.+|+++.+.... ++...+..++.+|.+.|++++|+.++++ .+.+.. +......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666654321 1333444456666666666666666655 222111 23333344555556666666665
Q ss_pred HHHH
Q 004006 423 LVRD 426 (779)
Q Consensus 423 ~~~~ 426 (779)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 267
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00052 Score=64.91 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=68.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
.+-+.+.++|++|+..|.++++... .|.+.|..-..+|.+.|.++.|++-.+..+..+. --..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcH
Confidence 4556677888888888888887743 2666677777888888888888887777776431 1366788888888888888
Q ss_pred HHHHHHHHHHHHcCC
Q 004006 383 EAADHWFEEAKERHA 397 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~ 397 (779)
++|++.|.+.++.++
T Consensus 166 ~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 166 EEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHHhhhccCC
Confidence 888888888877643
No 268
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.0012 Score=56.06 Aligned_cols=97 Identities=9% Similarity=0.039 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH
Q 004006 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL--NAIIYGNIIY 409 (779)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 409 (779)
+..+...+.+.|++++|.+.|+.+++.... .....+..++.++.+.|++++|+..|+.+....... ...++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555556666666666665543211 012344455555556666666666666555432221 1334555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 004006 410 AQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555554
No 269
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.72 E-value=0.00089 Score=68.83 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=45.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
...+...|++++|+.+|+++++.+.. +...|..+..+|.+.|++++|+..++++++... .+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 34444555555555555555554321 344444555555555555555555555554421 1344455555555555555
Q ss_pred HHHHHHHHHHHHc
Q 004006 383 EAADHWFEEAKER 395 (779)
Q Consensus 383 ~~A~~~~~~~~~~ 395 (779)
++|+..|+++++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555544
No 270
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00044 Score=65.33 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (779)
+-+.+.++|.+|+..|.+.++.. +-|.+.|..-..+|.++|.++.|++-.+..+... +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 34566777777777777777654 4456666677777777777777777777777654 234557777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHH
Q 004006 699 SALAVTKEMSAQKIPRNTFVY 719 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~ 719 (779)
+|.+.|++.++. .|+..+|
T Consensus 167 ~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHH
Confidence 777777777664 3555555
No 271
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.00063 Score=67.31 Aligned_cols=130 Identities=14% Similarity=0.179 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 367 VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ-TRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (779)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (779)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777766432 2234444444444223 44445566666666654 34455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 446 YTIIGNEEKCLIVFERLKECGFSPS---IISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
+...++.+.|..+|++.... +..+ ...|..+++.-.+.|+++.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666543 2211 23566666666666666666666666555
No 272
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00069 Score=54.52 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
.+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+.++...... +.+...+..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444455555555555555555443 2233444555555555555566665555555443 233345555555555666
Q ss_pred CHHHHHHHHHHHHH
Q 004006 731 DVWEAADLMQQMKQ 744 (779)
Q Consensus 731 ~~~~A~~~~~~m~~ 744 (779)
++++|..++++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666665555543
No 273
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.0016 Score=59.26 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
...|..++..+...|++++|+..|++.......+ ...++..+..+|...|++++|+..+++.+... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456777888888999999999999988763322 22478888888999999999999999888753 23456666777
Q ss_pred HHHH-------ccCCHHHHHHHHHH
Q 004006 374 GGFA-------KMGNAEAADHWFEE 391 (779)
Q Consensus 374 ~~~~-------~~g~~~~A~~~~~~ 391 (779)
..|. +.|++++|+..|++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 7776 66666655544443
No 274
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0024 Score=58.28 Aligned_cols=129 Identities=19% Similarity=0.141 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPN--EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 689 (779)
..+..+...+...|++++|+.+|++.+.....+. ...+..+...|.+.|++++|+..++++++.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455556666666777777777776664432221 2455666666666677777777666666653 234555555666
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004006 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKS 766 (779)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~ 766 (779)
+|...|+...+..-++.... .+++|.+++++..+. .|+. |..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 66666655444433332211 156677777776653 3333 5555555555554
No 275
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.67 E-value=0.00011 Score=68.87 Aligned_cols=82 Identities=22% Similarity=0.440 Sum_probs=64.7
Q ss_pred cceEEeccCCCcCChHHH------HHHHhccCCeeEEEEecCCCCCCCCcc-e-EEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 151 EGKIFVGNLPNWIKKHLV------MEFFRQFGPIKNVILIKGYNNFEKNVG-F-GFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l------~~~f~~~g~i~~~~~~~~~~~~~~~~g-~-~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
..-+||-+|++.+..++. .++|.+||.|+.+.|.+......-..| + .+|+|.+.++|.++|.+. +|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v--Dgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV--DGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh--cccccc
Confidence 346899999999888873 579999999998877764211111123 2 299999999999999999 999999
Q ss_pred ceEEEEEecCCc
Q 004006 223 GRVLTVKLDDGR 234 (779)
Q Consensus 223 ~~~~~v~~~~~~ 234 (779)
||.|+..+...+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999987655
No 276
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.67 E-value=7.6e-05 Score=46.55 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=15.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIE 363 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 363 (779)
+|+.+|.+|++.|+++.|+++|+.|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4445555555555555555555555444443
No 277
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.002 Score=58.81 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
....+..+...|...|++++|+..|++..+....+. ...+..+..++.+.|++++|+..+++.++... -+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 445677888899999999999999999987643322 35788888999999999999999999988642 356777788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
+.+|...|+...+..-++.+.. .+++|.+++++....+ | ..+..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--P--NNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--c--hhHHHHHHHHHhcCc
Confidence 8888888886666554444332 2566677777766653 1 224455555554443
No 278
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.64 E-value=0.0014 Score=68.06 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=64.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeE-EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..+..|||..||..+++.++.+.|..--.|++ |.|.. .-+++-++-|||+|..++.+..|..-- +.+.++.|.|+
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~--~P~~~~~~~afv~F~~~~a~~~a~~~~--~k~y~G~r~ir 507 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR--LPTDLLRPAAFVAFIHPTAPLTASSVK--TKFYPGHRIIR 507 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEecc--CCcccccchhhheeccccccchhhhcc--cccccCceEEE
Confidence 34569999999999999999999998777777 55544 467888999999999988887776544 67778899999
Q ss_pred EEec
Q 004006 228 VKLD 231 (779)
Q Consensus 228 v~~~ 231 (779)
|.-.
T Consensus 508 v~si 511 (944)
T KOG4307|consen 508 VDSI 511 (944)
T ss_pred eech
Confidence 9743
No 279
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.64 E-value=0.0013 Score=59.87 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL--DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (779)
..|..+...+...|++++|+..|++.+.....+ ...++..+..+|...|++++|+..+++..... +.....+..++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555666666777777666666543221 22456666667777777777777777666543 334445555555
Q ss_pred HHH-------hcCCHHHHHHHHHHH
Q 004006 725 GWA-------RRGDVWEAADLMQQM 742 (779)
Q Consensus 725 ~~~-------~~g~~~~A~~~~~~m 742 (779)
++. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555 667776555555543
No 280
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.026 Score=52.33 Aligned_cols=130 Identities=14% Similarity=0.104 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----H
Q 004006 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEAL-----L 688 (779)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~ 688 (779)
.+.++..+.-.|.+.-.+.++++.++.+.+-+......|+..-.+.||.+.|..+|++..+..-+.|..+++.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34444444555555555555665555443444455555555555566666666666554433222222222222 2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|.-++++.+|...+.++...+ +.|...-|.-.-++.-.|+..+|++.++.|++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23334445555555555555443 33444444444444445566666666666655
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.59 E-value=0.14 Score=53.89 Aligned_cols=412 Identities=13% Similarity=0.102 Sum_probs=199.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+...|+.||..--.....+.++..++.++.. -|... -|-.....=.+.|..+.+.++|++-+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666776655555567777777777755 34443 4555555556778888888888888763 677777777766
Q ss_pred HHHH-ccCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--
Q 004006 374 GGFA-KMGNAEAADHWFEEAKERHA--TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-- 448 (779)
Q Consensus 374 ~~~~-~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 448 (779)
..++ ..|+.+...+.|+.+...-. -.....|...|..-..++++.....+++++++.- ...++.....|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 6555 44677778888888776421 1245567777777777788888888888877641 2222222222211
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH-------HHHHHh
Q 004006 449 -IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM--KTYSML-------INGFLK 518 (779)
Q Consensus 449 -~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l-------l~~~~~ 518 (779)
.... .-+.-++...+... + +... ......+. .+..+=..+...+...+. ...+.+ -.+|..
T Consensus 197 ~~~~~-~~l~~~d~~~~l~~--~--~~~~--~~~~~~~~--~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~ 267 (577)
T KOG1258|consen 197 NQNEE-KILLSIDELIQLRS--D--VAER--SKITHSQE--PLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQK 267 (577)
T ss_pred hcCCh-hhhcCHHHHHHHhh--h--HHhh--hhcccccC--hhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1110 00111111111000 0 0000 00000011 111111111111100010 011111 112222
Q ss_pred cCCHHHHHHHHHHHHHCC---CC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 004006 519 LKDWANVFAVFEDVMRDG---LK----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGE 591 (779)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (779)
.....+....|+.-++.- ++ .+..+|..-+.--.+.|+.+.+..+|+...-- +..-...|-..+.-....|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCc
Confidence 223333333344333321 11 23456666666667777777777777765431 01112233333333444577
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH--
Q 004006 592 MKRALEIFDMMRRSGCI--PTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH-TYTTIMHGYASLGDTGKAF-- 666 (779)
Q Consensus 592 ~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~-- 666 (779)
.+-+..++....+..++ |....+.+.+ .-..|+++.|..+++...+.- |+.. .-..-+....+.|+.+.+.
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 77777666665554332 2233333222 223467777777777776542 3322 1112223334556666655
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 667 -EYFTKLRNEGLELDVFTYEALLKA-----CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 667 -~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
+++....+. .-+..+...+.-- +.-.++.+.|..++.++.+.. +.+...|..++......+
T Consensus 423 ~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 333333222 2222233333222 223566777777777776653 556666666666655544
No 282
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0017 Score=64.33 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV-GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
+|..+++..-+.+..+.|+.+|.++.+.+ .-+..+|-.....-.+ .++.+.|.++|+..++. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46677777777777888888888887543 2234444444444223 45666688888887775 555777788888888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 377 AKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
.+.|+.+.|..+|++.... ...+ ...|..++..-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888887765 2211 236666666666666666666666666654
No 283
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.55 E-value=0.16 Score=53.44 Aligned_cols=398 Identities=13% Similarity=0.077 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.++..|+..|...|-.+. -|......=.+.|..+.+.++|++.+. ++.-++..|...+..+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~g---------------yW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYG---------------YWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred HHHHHHHHHHHhhCccHHH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc
Confidence 6677888888887775321 244455666678899999999999986 467788888888877654
Q ss_pred -cCChHHHHHHHHHHHHc-CCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc------
Q 004006 344 -GRDMEEALSCVRKMKEE-GIE-MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT------ 414 (779)
Q Consensus 344 -~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 414 (779)
.|+.+...++|+..+.. |.. .+...|-..+..-...+++.....+|+++++.-.. ....|...-.-+.+.
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~-~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH-QLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHhcCChhhh
Confidence 47888888888887663 322 25667888888888899999999999999886211 111111111111211
Q ss_pred CChHHHHHHHHHHHHc-CC---CCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 415 RNMERAEALVRDMEEE-GI---DAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 415 g~~~~A~~~~~~~~~~-~~---~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
...+++.++-....++ .. ......+...++-- ...+..+++...+.+... ..-.++...-...+
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEE 273 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHH
Confidence 2233333333222221 00 00000011111000 001111111111111110 11111222222233
Q ss_pred HHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004006 490 ALEVSKVMKSSG-------IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (779)
Q Consensus 490 A~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 562 (779)
....|+.-.+.- ...+..+|..-+..-.+.|+++.+.-+|++..-- +..-...|-..+.-....|+.+-|..
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHH
Confidence 333333333321 1234568888888888999999999999887531 12233455555665566688888888
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHH
Q 004006 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVH-TFNALILGLVEKRQMEKAI---EILDEMT 638 (779)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~---~~~~~m~ 638 (779)
++....+...+-...+-..-.......|+++.|..+++.+...- |+.. .-..-+....+.|..+.+. .++....
T Consensus 353 ~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~ 430 (577)
T KOG1258|consen 353 VLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY 430 (577)
T ss_pred HHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc
Confidence 88776665444222222222223445689999999999998753 3322 2222344566777777776 3333322
Q ss_pred HCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004006 639 LAGISPNEHTYTTIMH-----GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695 (779)
Q Consensus 639 ~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (779)
.. .-+..+...+.- .+.-.++.+.|..++.++.+. ++.+...|..++..+...+
T Consensus 431 ~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 EG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 21 111111111111 233457889999999999887 4677888888888777665
No 284
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.015 Score=50.92 Aligned_cols=132 Identities=17% Similarity=0.095 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCHhHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MSLVTYSII 372 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 372 (779)
|+......|.+++.+.|++.+|...|++...--+..|....-.+.++....+++..|..+++++.+.... .+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4566677788999999999999999998876555567777888888888889999999998888775421 245566777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (779)
.+.|...|++.+|+..|+.+...-..+....++ ...+.++|+.+++..-+.++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHHH
Confidence 888888888888888888887753333333333 34455667666655444333
No 285
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.12 Score=51.71 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (779)
+.+.-|.-+...|+...|.++-.+.. .|+...|...+.+|+..+++++...+... . -.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34444556667777777776655553 57777888888888888888776665332 1 13456777788888
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888888887777621 244566777888888877765443
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.026 Score=60.99 Aligned_cols=141 Identities=13% Similarity=0.220 Sum_probs=69.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
+.+.+.|++++|...|-+-+.. ++| ..+|.-|....++.+-...++.+.+.|+. +..--+.|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3444566666666665554432 111 22344444555555555566666666654 4444556666666666666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
+-.++.+... .|.. ..-....+..+.+.+-.++|..+-.+... ... .+...+...+++++|++.+..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 6555554443 1110 11133444555555555555544433322 111 1222334556666666665544
No 287
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.52 E-value=0.00037 Score=67.59 Aligned_cols=79 Identities=16% Similarity=0.344 Sum_probs=70.1
Q ss_pred cceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++.|.|.||.. .+|.+-|..+|+-||.|.+|+|... + +--|.|.+.+...|+-|++.| +|..+.|++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-k-----kd~ALIQmsd~~qAqLA~~hL--~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-K-----KDNALIQMSDGQQAQLAMEHL--EGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-C-----CcceeeeecchhHHHHHHHHh--hcceecCceEEEe
Confidence 46899999965 6899999999999999999999976 2 357999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++...+.
T Consensus 369 ~SKH~~vq 376 (492)
T KOG1190|consen 369 LSKHTNVQ 376 (492)
T ss_pred eccCcccc
Confidence 98876543
No 288
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.50 E-value=0.12 Score=50.97 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR-GDVWEAADLMQQMKQ 744 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 744 (779)
+......+..+-...|++..|..--+..... .|....|..|.+.-.-. ||-.++..++-+.++
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3334444444444555555444444433332 34444444444443332 555555555554443
No 289
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.47 E-value=0.00016 Score=43.96 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 334 YTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
||.+|++|.+.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 290
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00017 Score=43.83 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 718 VYNILIDGWARRGDVWEAADLMQQMKQEG 746 (779)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (779)
+|+.|+++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 291
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.46 E-value=0.015 Score=54.54 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHH
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRDGLKP--DVVLYNNIIRAFCGMGNMDRA 560 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~A 560 (779)
+...|.+.|.+..|..-++.+++.-... .......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 4566777777777777777777652211 123445566677777766643
No 292
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.45 E-value=0.0028 Score=50.49 Aligned_cols=77 Identities=13% Similarity=0.395 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGC-IPTVHTFNALILGLVEKRQ--------MEKAIEILDEMTLAGISPNEHTYTT 651 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~--------~~~A~~~~~~m~~~~~~~~~~~~~~ 651 (779)
..|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- +-+.+.+|++|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566777777788888877777 6778888877777665431 2345566667776667777777777
Q ss_pred HHHHHH
Q 004006 652 IMHGYA 657 (779)
Q Consensus 652 li~~~~ 657 (779)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 766554
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.067 Score=58.01 Aligned_cols=174 Identities=9% Similarity=0.041 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHV----YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...++.+.+...+.-|+.+...- +. +... .......+.+.|++++|...|-+-+.. ++| ..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34566666667777776654432 21 2222 223334455667888887776555432 222 234455
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .| +.-| ....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHH
Confidence 55666666666777777777665 56666677777777777777666555443 22 1111 2334455555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
|..+-.+... +.... --.+-..|++++|++++..+
T Consensus 482 a~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcC
Confidence 5544433321 12222 22334557777777776554
No 294
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.15 Score=54.68 Aligned_cols=110 Identities=18% Similarity=0.277 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (779)
+.+--+.-+...|+-.+|.++-.+.. .||...|-.-+.+++..+++++-+++-+..+ ...-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44444555666677777766665554 4677777777777777777766555544332 1234555667777
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 777777777777665321 1 355667777777777665433
No 295
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.42 E-value=8.6e-05 Score=67.29 Aligned_cols=70 Identities=24% Similarity=0.387 Sum_probs=62.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++++|-+++.++...+|...|.++|.+....+ . ++++||+|.+.+++.+|+..+ +|..+.|+.|++.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~-------~~~~~v~Fs~~~da~ra~~~l--~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--R-------RNFAFVEFSEQEDAKRALEKL--DGKKLNGRRISVE 166 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--h-------ccccceeehhhhhhhhcchhc--cchhhcCceeeec
Confidence 3469999999999999999999999999854433 2 689999999999999999999 9999999999994
Q ss_pred e
Q 004006 230 L 230 (779)
Q Consensus 230 ~ 230 (779)
.
T Consensus 167 ~ 167 (216)
T KOG0106|consen 167 K 167 (216)
T ss_pred c
Confidence 4
No 296
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0094 Score=57.03 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHH
Q 004006 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVY 719 (779)
Q Consensus 643 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~ 719 (779)
+-|...|..|..+|...|+++.|...|....+.. ..+...+..+..++....+ -.++..+|+++...+ +-|+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 5567788888888888888888888888887764 4566677777776654432 457888888888776 6677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 720 NILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (779)
Q Consensus 720 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (779)
..|...++..|++++|...++.|++. .|....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 77888888888888888888888874 333334444444
No 297
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.015 Score=62.59 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 679 LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (779)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (779)
.+...|..+.-.+...|++++|...++++.+.+ |+...|..++..+...|+.++|.+.+++..+ +.|...+|
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 345566666666666777777777777777765 5667777777777777777777777777766 34443343
No 298
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.40 E-value=7.9e-05 Score=72.43 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=73.1
Q ss_pred eEE-eccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIF-VGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~-v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++| |+++++.+++++|+..|..+|.|..+++..+ ..+|.++|||||.|........++.. +...+.|+++.+...
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~-~~s~~~kg~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD-EESGDSKGFAYVDFSAGNSKKLALND---QTRSIGGRPLRLEED 261 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCC-CCccchhhhhhhhhhhchhHHHHhhc---ccCcccCcccccccC
Confidence 555 9999999999999999999999999999988 89999999999999999888887743 578889999999998
Q ss_pred CCcchhhH
Q 004006 232 DGRRLKNK 239 (779)
Q Consensus 232 ~~~~~~~~ 239 (779)
.++.....
T Consensus 262 ~~~~~~~~ 269 (285)
T KOG4210|consen 262 EPRPKSDG 269 (285)
T ss_pred CCCccccc
Confidence 88765543
No 299
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0093 Score=57.06 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---CChHHHHHHHHHHHHcCCCCCHhHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG---RDMEEALSCVRKMKEEGIEMSLVTYSI 371 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (779)
|...|..|..+|...|++..|..-|.+..+.. ..+...+..+..++... .+..++.++|++++..+.. |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 56667777777777777777777777776653 22444444444443322 2345566666666665422 5555666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666666666666666666654
No 300
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.01 Score=49.39 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=63.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHH
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGF 376 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~ 376 (779)
.+..++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|+.++++....... .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 355667778888888888888888776533 234555667777888888888888887765211 1333344445566
Q ss_pred HccCCHHHHHHHHHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~ 394 (779)
...|+.++|++++-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777888888887766554
No 301
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.22 Score=50.00 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=85.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (779)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 655 (779)
..+.+..+.-+...|+...|.++-.+.. .|+...|...+.+|+..++|++-..+... +-...-|...+.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 4456666777888899888888766653 36888999999999999999887765432 1234678888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 656 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
|.+.|+..+|..++.++ .+..-+..|.++|++.+|.+..-+.
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999888872 2255678899999999988765543
No 302
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.33 E-value=0.00085 Score=50.20 Aligned_cols=63 Identities=22% Similarity=0.162 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-NMERAEALVRDMEE 429 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 429 (779)
..+|..++..+...|++++|+..|+++++.+.. +..+|..+..+|.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344455555555555555555555555554333 4445555555555555 35555555544443
No 303
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.31 E-value=0.083 Score=46.41 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHH
Q 004006 364 MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMM 442 (779)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l 442 (779)
|.+.-...|...+.+.|+..+|...|++...--..-|......+.++....+++.+|...++++.+.+- .........+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444445555556666666666666666555433333555555566666666666666666666655431 0112333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
.+.|...|.+.+|...|+..... -|+...-......+.+.|+.+++..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 55666666666666666666554 2333333333444555555554443
No 304
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.03 Score=52.55 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
..+......+.+.|++.+|+..|+.+...-.. -...+.-.++.++.+.|++++|...++++++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445666777888888888888888875221 12235666777788888888888888888775
No 305
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.30 E-value=0.014 Score=48.71 Aligned_cols=91 Identities=21% Similarity=0.181 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR---NTFVYNILIDGW 726 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~ 726 (779)
+..++...|+.++|+.+|++.+..|+... ...+..+...|...|++++|..+|++..... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455666777777777777776665433 3345556666667777777777777666532 21 223333444566
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004006 727 ARRGDVWEAADLMQQMK 743 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~ 743 (779)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66777777777665544
No 306
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.0071 Score=65.06 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHCC-CCCCHh
Q 004006 262 EREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARR--------GDMHRARQTFENMRARG-IEPTLH 332 (779)
Q Consensus 262 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~-~~~~~~ 332 (779)
..+.|+.+|.++++.+|+ ....|..+..+|... +++..+.+..++..... ...+..
T Consensus 357 ~~~~A~~lle~Ai~ldP~---------------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~ 421 (517)
T PRK10153 357 SLNKASDLLEEILKSEPD---------------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR 421 (517)
T ss_pred HHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence 346788888888888886 333444433333221 11233334444433321 122345
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (779)
.|..+.-.+...|++++|...+++.++.+ ++...|..++..|...|+.++|.+.|+++...++
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56555555555677777777777777754 4666777777777777777777777777766543
No 307
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.24 E-value=0.004 Score=64.91 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=67.8
Q ss_pred ccccc-eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 148 FRQEG-KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 148 ~~~~~-~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.+.++ .|-+.|.|++++-+|+.++|.-|-.+-.-.+++. ...|+..|-+-|.|++.+.|.+|...+ ++..|..|.|
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~-nd~G~pTGe~mvAfes~~eAr~A~~dl--~~~~i~nr~V 939 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR-NDDGVPTGECMVAFESQEEARRASMDL--DGQKIRNRVV 939 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEee-cCCCCcccceeEeecCHHHHHhhhhcc--ccCcccceeE
Confidence 34555 7888999999999999999999977654333333 567999999999999999999999999 9999999999
Q ss_pred EEEe
Q 004006 227 TVKL 230 (779)
Q Consensus 227 ~v~~ 230 (779)
++.+
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8764
No 308
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0055 Score=55.51 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----------------CChHHHHHH
Q 004006 295 SRREFGLMVNYYAR-----RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG----------------RDMEEALSC 353 (779)
Q Consensus 295 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~A~~~ 353 (779)
+..+|..++..|.+ .|..+--...+..|.+.|+..|..+|+.||+++=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55566666666653 366677777888999999999999999999987542 223456677
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHccC
Q 004006 354 VRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 354 ~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (779)
+++|...|+-||.+++..|++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 777777777777777777777765544
No 309
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0018 Score=47.69 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
+...+...|++++|...|+++++.. +.+...+..++.++...|++++|..+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777777777776665 44566667777777777777777777777765
No 310
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.0093 Score=54.10 Aligned_cols=87 Identities=16% Similarity=0.309 Sum_probs=50.7
Q ss_pred CHhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 004006 470 SIISYGCLINLYTK-----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL----------------KDWANVFAV 528 (779)
Q Consensus 470 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 528 (779)
+..+|..+++.|.+ .|..+-....++.|.+.|+..|..+|+.||+.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55555555555543 355666666666666666666666666666665432 233445566
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 004006 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGN 556 (779)
Q Consensus 529 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 556 (779)
+++|...|+-||..++..|++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666666666666666666555443
No 311
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.14 E-value=0.002 Score=48.19 Aligned_cols=62 Identities=27% Similarity=0.270 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEAKE 394 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 394 (779)
.+|..+...+...|++++|+..|++.++.+.. +...|..+..+|.+.| ++++|++.|+++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444445555555555555555555444311 3444555555555555 45555555555443
No 312
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0016 Score=47.96 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=19.8
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004006 341 YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (779)
+.+.|++++|..+|+++++.. +-+...+..+..++...|++++|+.+|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444332 1133333444444444444444444444333
No 313
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.12 E-value=0.00054 Score=62.30 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=62.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCC--------CCCcc----eEEEEeCCHHHHHHHHHHhhh
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF--------EKNVG----FGFVIYDGPAAEKSAMKAVEF 216 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--------~~~~g----~~fv~f~~~~~a~~a~~~~~~ 216 (779)
+..+.||++++|+.+...-|+++|+.||.|-.|.+... ..+ |++++ =|.|+|.+...|.+....|
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE-~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L-- 148 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE-DDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL-- 148 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecch-hhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh--
Confidence 46789999999999999999999999999999988775 444 44433 3679999999999999988
Q ss_pred CCceeeceE
Q 004006 217 DGVEFHGRV 225 (779)
Q Consensus 217 ~g~~~~~~~ 225 (779)
||..|+|+.
T Consensus 149 nn~~Iggkk 157 (278)
T KOG3152|consen 149 NNTPIGGKK 157 (278)
T ss_pred CCCccCCCC
Confidence 999999864
No 314
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.11 E-value=0.044 Score=57.33 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCChHHHHHHH---------HHHHHCCCCCCHhhHHHHHHHHHccCChH--HHHHHHHHHHHcCCCCCHh
Q 004006 299 FGLMVNYYARRGDMHRARQTF---------ENMRARGIEPTLHVYTNLIHAYAVGRDME--EALSCVRKMKEEGIEMSLV 367 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~ 367 (779)
+.+-+-.|...|.+++|.++- +.+... ..+..-++..=++|.+..+.. +...-+++|.++|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 344456677888888886532 111111 112233445555665554433 3344456666666556654
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEA 392 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (779)
. +...++-.|+|.+|.++|.+-
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHHc
Confidence 3 445566778888888877654
No 315
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.0015 Score=48.68 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=20.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
.|++++|+++|+++...... +...+..++.+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444443211 344444444444444444444444444443
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.12 Score=47.69 Aligned_cols=205 Identities=10% Similarity=0.091 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.|..-..+|-...++++|...+.+..+- .+.+...| ... ..++.|..+.++|.+. .--+..|.-...+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444567787888899999988888753 22222222 222 3456677777777663 223455677778889
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCCH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE---G--IDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~ 452 (779)
.+|..+.|-..++++-+. .+..+.++|+++|.+.... + ...-...+....+.+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 999988888888776542 2334455566665554431 0 001122233444555566666
Q ss_pred HHHHHHHHHHHHCCC----CCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 004006 453 EKCLIVFERLKECGF----SPS-IISYGCLINLYTKIGKVSKALEVSKVMKSSG---IKHNMKTYSMLINGFLKLKDWAN 524 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~----~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~ 524 (779)
++|-..|.+...... -++ -..|...|-.|.-..++..|...++.-.+.+ -.-+..+...||.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 655554443321100 001 1123344445555566667776666543322 122344555555555 3455555
Q ss_pred HHHHH
Q 004006 525 VFAVF 529 (779)
Q Consensus 525 a~~~~ 529 (779)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 54443
No 317
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.03 E-value=0.096 Score=52.91 Aligned_cols=180 Identities=12% Similarity=0.022 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHhH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARG---IEPTLHVYTNLIHAYAV---GRDMEEALSCVRKMKEEGIEMSLVT 368 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~ 368 (779)
+..+...|+-.|-...+|+.-+++.+.+...- +.....+-....-++-+ .|+.++|++++..++...-..+..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444455556778888888888888887651 11122222233334445 6888888888888655555567788
Q ss_pred HHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 004006 369 YSIIVGGFAKM---------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIY 439 (779)
Q Consensus 369 ~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 439 (779)
|..+++.|... ...++|+.+|.+.-+.. ++...--+++..+.-.|...+...-++++. ..+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--------~~l 289 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIG--------VKL 289 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHH--------HHH
Confidence 88888776531 12455555555554432 222222222222222222111110000000 000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
+ ....+.|.. +-..|...+.+++.++.-.|++++|.+.+++|...
T Consensus 290 ~---~llg~kg~~-------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 290 S---SLLGRKGSL-------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred H---HHHHhhccc-------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 0 001111110 11235566677888888888888888888888865
No 318
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.01 E-value=0.19 Score=50.91 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 004006 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS---------LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694 (779)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (779)
.|+.++|+.++..+......++..+|..+...|-. ....++|+..|.+.-+.. ++.+.--.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHc
Confidence 45555555555554433334445555554444421 112566666666655442 3443333333334444
Q ss_pred CC-hH---HHHHHH---H-HHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004006 695 GR-MQ---SALAVT---K-EMSAQK---IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (779)
Q Consensus 695 g~-~~---~A~~~~---~-~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (779)
|. ++ +..++- . .+.+.| -..+-+.+.+++.+..-.|++++|.+..++|.+. .|...
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 43 11 222222 1 111222 1345566688888899999999999999999874 44433
No 319
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.00 E-value=0.0013 Score=65.89 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=62.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeE-EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..|-+.+||+.+|++||.++|+.--.+.. +.++.| ..|++.|=|||.|++.+.++.|+.. |...|+.|.|.|-.
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae~Al~r---hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAEIALGR---HRENIGHRYIEVFR 178 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHHHHHHH---HHHhhccceEEeeh
Confidence 47888999999999999999997544433 555665 4478999999999999999999976 78889999999865
Q ss_pred c
Q 004006 231 D 231 (779)
Q Consensus 231 ~ 231 (779)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 5
No 320
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.99 E-value=0.0024 Score=47.50 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR 325 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (779)
+.|...|.+++..+|. +...+..++.+|.+.|++++|..+++++...
T Consensus 8 ~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 8 DEAIELLEKALQRNPD---------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHTTT---------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555554 4444445555555555555555555555554
No 321
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.94 E-value=0.018 Score=55.99 Aligned_cols=89 Identities=8% Similarity=0.005 Sum_probs=39.5
Q ss_pred HccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCh
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 417 (779)
.+.|++++|+..|+.+++.-..- ....+..++.+|...|++++|+..|+.+.+..+. ....++..++.+|...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 33444555555555544432110 0134444455555555555555555555443211 1233444444445555555
Q ss_pred HHHHHHHHHHHHc
Q 004006 418 ERAEALVRDMEEE 430 (779)
Q Consensus 418 ~~A~~~~~~~~~~ 430 (779)
++|..+|+++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 322
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.93 E-value=0.017 Score=56.06 Aligned_cols=98 Identities=8% Similarity=-0.022 Sum_probs=59.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLN--AIIYGNIIYAQCQTRNMERAEALVRDMEEEG--IDAPIDIYHMMM 443 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 443 (779)
.|...+..+.+.|++++|+..|+.+.+..+... ..++..++.+|...|++++|...|+.+.+.- .......+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776643311 2466667777777777777777777776542 112234455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004006 444 DGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
.++...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5666666666666666666654
No 323
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.84 Score=49.39 Aligned_cols=87 Identities=8% Similarity=-0.035 Sum_probs=40.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN--MERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
+++-+...+.+..|+++-..+...-.. ...+|......+.+..+ -+++++..++=..... ..-..|..+.......
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 444555666667776666555433222 13445555555554422 1222222222111111 2234455555556666
Q ss_pred CCHHHHHHHHH
Q 004006 450 GNEEKCLIVFE 460 (779)
Q Consensus 450 g~~~~a~~~~~ 460 (779)
|+.+-|..+++
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 66666666554
No 324
>PRK15331 chaperone protein SicA; Provisional
Probab=96.92 E-value=0.061 Score=46.87 Aligned_cols=85 Identities=12% Similarity=0.000 Sum_probs=42.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (779)
..|++++|+.+|..+...+.. |...|..|..+|-..+++++|+++|......+ ..|...+..+..+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 455555555555555444333 44445555555555555555555555444443 2233334444555555555555555
Q ss_pred HHHHHHH
Q 004006 458 VFERLKE 464 (779)
Q Consensus 458 ~~~~~~~ 464 (779)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555444
No 325
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.89 E-value=0.2 Score=45.27 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=113.0
Q ss_pred hhHHHHHhhhcccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004006 237 KNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRAR 316 (779)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (779)
|....+.+.-+|..-|-. .-|+-=|.+.+.++|. -+..||.|.-.+...|+++.|.
T Consensus 64 RA~l~fERGvlYDSlGL~---------~LAR~DftQaLai~P~---------------m~~vfNyLG~Yl~~a~~fdaa~ 119 (297)
T COG4785 64 RAQLLFERGVLYDSLGLR---------ALARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAY 119 (297)
T ss_pred HHHHHHHhcchhhhhhHH---------HHHhhhhhhhhhcCCC---------------cHHHHHHHHHHHHhcccchHHH
Confidence 344555444446666655 7788889999999886 6778899999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccCCHHHHHHHH-HHHHH
Q 004006 317 QTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADHWF-EEAKE 394 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~ 394 (779)
+.|+...+.+..-+-...|.-|..| -.|++.-|.+-|-..-..+.. |=-..|..+.. ..-+..+|..-+ ++...
T Consensus 120 eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 120 EAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred HHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh
Confidence 9999999986554444556666655 458999998877777654322 22223333332 334566665433 33333
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 395 RHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID------APIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
. +..-|..-|..|.- |++. .+.+++++....-. .-..+|.-+.+.|...|+.++|..+|+....
T Consensus 196 ~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 196 S----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred c----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2 44444433333221 1111 11233333321100 0123455555666666666666666665544
No 326
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.88 E-value=0.086 Score=55.28 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-------
Q 004006 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF------- 717 (779)
Q Consensus 645 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------- 717 (779)
+..+...+...+.+...+.-|-++|++|-+. ..+++.....++|.+|..+.++.-+. .+|+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555556666677888888877543 35677788888899888888776543 23322
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 718 ----VYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 718 ----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
-|.---.+|-+.|+-+||.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1223345678889999999999988654
No 327
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.88 E-value=0.049 Score=52.67 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=68.6
Q ss_pred ccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+++.+.|-+|... ++-+.|..+|-.||.|+.|++++. + .|-|.|+..+....++|+.-| |+..+-|.+|.|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k-----~gtamVemgd~~aver~v~hL--nn~~lfG~kl~v 357 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-K-----PGTAMVEMGDAYAVERAVTHL--NNIPLFGGKLNV 357 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-c-----cceeEEEcCcHHHHHHHHHHh--ccCccccceEEE
Confidence 4568999999775 455788999999999999999986 3 589999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
++++-..
T Consensus 358 ~~SkQ~~ 364 (494)
T KOG1456|consen 358 CVSKQNF 364 (494)
T ss_pred eeccccc
Confidence 9986554
No 328
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0036 Score=63.32 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=50.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCC--CCcc---eEEEEeCCHHHHHHHHHHhhh
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVG---FGFVIYDGPAAEKSAMKAVEF 216 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~g---~~fv~f~~~~~a~~a~~~~~~ 216 (779)
+=.++||||+||++++|+.|...|..||.+. |.........+ -.+| |+|..|+++.++++-+.++..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 3446999999999999999999999999975 22221001111 2267 999999999999999988843
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.85 E-value=0.68 Score=47.15 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
++.........+...|+|+.+...+...... +.....+...+++...+.|++++|..+-+-|+...++ +.+.......
T Consensus 322 ~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~ 399 (831)
T PRK15180 322 DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAG 399 (831)
T ss_pred CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhheeeecc
Confidence 3444444556777889999999988776543 3445677888888899999999999999999887666 6666666655
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC
Q 004006 375 GFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
.--..|.++++.-.+.++.....+
T Consensus 400 sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhccCCh
Confidence 666778899999888888776544
No 330
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.84 E-value=0.00054 Score=66.48 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=60.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+..+.++|||++++|+++..++.+||.|..+.+.+. +..+|++|.+.++|..-+.-...---.+.|++|.|++
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeecc-------chhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 348999999999999999999999999999988876 5699999999887776332221122336788999888
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
+..+
T Consensus 101 sn~~ 104 (492)
T KOG1190|consen 101 SNHS 104 (492)
T ss_pred hhHH
Confidence 5433
No 331
>PRK15331 chaperone protein SicA; Provisional
Probab=96.83 E-value=0.017 Score=50.20 Aligned_cols=91 Identities=12% Similarity=0.007 Sum_probs=50.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
..-.+.+.|++++|..+|.-+...+.. +..-|..|..++-..+++++|+.+|......+. -|...+..+..+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 344444666666666666666555432 344445555555555666666666655544332 244445555666666666
Q ss_pred HHHHHHHHHHHHH
Q 004006 382 AEAADHWFEEAKE 394 (779)
Q Consensus 382 ~~~A~~~~~~~~~ 394 (779)
.+.|+..|+.+.+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665554
No 332
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.81 E-value=0.0059 Score=48.45 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=49.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEE-EecCCC-----CCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVI-LIKGYN-----NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~-~~~~~~-----~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
..|.|-+.|.. ....+.+.|++||.|.+.. +.++.. ......+.-.|.|+++.+|.+|+.. ||..++|..
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~---NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK---NGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT---TTEEETTCE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh---CCeEEcCcE
Confidence 46778888887 5567788999999998764 111100 0011256899999999999999865 999998865
Q ss_pred E-EEEec
Q 004006 226 L-TVKLD 231 (779)
Q Consensus 226 ~-~v~~~ 231 (779)
| -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5 45554
No 333
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.79 E-value=0.0049 Score=65.46 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 004006 265 WHRREFRKAV 274 (779)
Q Consensus 265 ~a~~~f~~~~ 274 (779)
++.++|+..+
T Consensus 441 e~~R~~nlai 450 (830)
T KOG1923|consen 441 EQRRLFNLAI 450 (830)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 334
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.75 E-value=0.004 Score=57.70 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 166 HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 166 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+++.+...+||.|..|.|..+....-.-.---||+|+..++|.+|+..| ||..|+||.++.+|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl--nGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL--NGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc--CCceecceeeeheecc
Confidence 4667888999999999888772222222345799999999999999999 9999999999988753
No 335
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.74 E-value=0.53 Score=44.38 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=34.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRDGLK--PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 570 (779)
+.+.|.+.|.+..|..-++.|++.-.. -....+-.+..+|...|-.++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 445667777777777777777765111 11233444556667777777766655554443
No 336
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0035 Score=63.42 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=60.1
Q ss_pred hccccceEEeccCCCcCChHHHHHHHh-ccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 004006 147 EFRQEGKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213 (779)
Q Consensus 147 ~~~~~~~~~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 213 (779)
..++.++||||+||.-++-++|-.+|. -||.|..+-|=.| ..-+-.+|=|=|+|.+..+..+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD-~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD-PKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC-cccCCCCCcceeeecccHHHHHHHhh
Confidence 346778999999999999999999998 5999999999988 66788899999999999999999976
No 337
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.71 E-value=0.046 Score=52.19 Aligned_cols=10 Identities=0% Similarity=0.033 Sum_probs=3.9
Q ss_pred ChHHHHHHHh
Q 004006 164 KKHLVMEFFR 173 (779)
Q Consensus 164 ~~~~l~~~f~ 173 (779)
+|.++++++.
T Consensus 358 SeAEFEdiM~ 367 (498)
T KOG4849|consen 358 SEAEFEDIMT 367 (498)
T ss_pred hHHHHHHHHh
Confidence 3344444333
No 338
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.70 E-value=0.0063 Score=58.14 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=65.9
Q ss_pred hhccccceEEeccCCC----cCC-------hHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 146 TEFRQEGKIFVGNLPN----WIK-------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 146 ~~~~~~~~~~v~~l~~----~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
...+..++|.+.|+-. ..+ .++|++-.++||.|..|.|.-. .+.|.+-|.|.+.+.|..+|+.|
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-----hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-----HPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-----CCCceeEEEeCChHHHHHHHHHh
Confidence 3445667899998832 223 2466677899999999977643 33799999999999999999999
Q ss_pred hhCCceeeceEEEEEecCCcc
Q 004006 215 EFDGVEFHGRVLTVKLDDGRR 235 (779)
Q Consensus 215 ~~~g~~~~~~~~~v~~~~~~~ 235 (779)
+|..|+||.|..++-.++.
T Consensus 335 --~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 335 --DGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred --cCeeecceEEEEEEeCCcc
Confidence 9999999999998766554
No 339
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.0046 Score=63.87 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=52.0
Q ss_pred HHHHHHhccCCeeEEEEecCCC--CCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 167 LVMEFFRQFGPIKNVILIKGYN--NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 167 ~l~~~f~~~g~i~~~~~~~~~~--~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+++.-+++||.|..|.|.++.. ...-.-|..||+|.+.+++++|.++| +|..+.||.|...|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L--~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL--TGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc--cCceeCCcEEEEEec
Confidence 5566788999999999988611 12333678899999999999999999 999999999998874
No 340
>PRK11906 transcriptional regulator; Provisional
Probab=96.67 E-value=0.11 Score=53.20 Aligned_cols=117 Identities=7% Similarity=-0.043 Sum_probs=73.9
Q ss_pred hHHHHHHHHHH---hcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCChHHHHHHHHHHHHCCCCCCH
Q 004006 264 EWHRREFRKAV---ETQPENWQAVVSAFERIKKPSRREFGLMVNYYA---------RRGDMHRARQTFENMRARGIEPTL 331 (779)
Q Consensus 264 ~~a~~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 331 (779)
+.|..+|.+++ ..+|. ....|..+..++. ......+|+++.++..+.+. .|.
T Consensus 275 ~~Al~lf~ra~~~~~ldp~---------------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da 338 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTL---------------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDG 338 (458)
T ss_pred HHHHHHHHHHhhcccCCcc---------------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCH
Confidence 66888888888 77765 2222332222221 23345667777777777653 366
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (779)
.+...+..++...++++.|..+|++....+.. ...+|......++-.|+.++|.+.+++..+..+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 66666666666677777777777777775422 455666666666677777777777777666543
No 341
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.66 E-value=0.0026 Score=66.35 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=58.9
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
++||||+...+..+-+..+...||.|..++.+. |||.+|.+.....+|+..+ +-..++|+.+.+..
T Consensus 42 ~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----------fgf~~f~~~~~~~ra~r~~--t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 42 TVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----------FGFCEFLKHIGDLRASRLL--TELNIDDQKLIENV 107 (668)
T ss_pred eeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----------hcccchhhHHHHHHHHHHh--cccCCCcchhhccc
Confidence 899999999999999999999999998876542 9999999999999999988 88888888887654
No 342
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.067 Score=57.21 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTL------HVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVT 368 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 368 (779)
+..++...+=.|+-+.+++++.+..+.+--... ..|+.++..+.. ..+.+.|.++++.+.++ . |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-y-P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-Y-PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-C-CCcHH
Confidence 334555555566666666666665543211111 123333322222 23455566666666554 2 23333
Q ss_pred H-HHHHHHHHccCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 369 Y-SIIVGGFAKMGNAEAADHWFEEAKERH---ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 369 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
| ..-.+.+...|++++|++.|+++.... .+.....+.-++.++.-..++++|.+.|..+.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3 333344555566666666666544211 1112333444444455555555555555555543
No 343
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.63 E-value=0.85 Score=45.33 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=80.8
Q ss_pred HHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 298 EFGLMVNYYA--RRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 298 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
.|..|-.++. -.|+-..|+++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|.. |.+|...=+
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 3566655555 346777787777776543 23355555555543 2345888888888888876 334433322
Q ss_pred HH----HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 374 GG----FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 374 ~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++ --+.|..+.|+.+-+..-+.-.. -...+...+...|..|+++.|+++++.-...
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 22 23677888888777777665333 5567777788888888888888888766554
No 344
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.61 E-value=0.35 Score=45.52 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 441 MMMDGYTIIGNEEKCLIVFERLKECGFSPS---IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
.+.+.|.+.|.+..|..-+++|++. ..-. ...+-.|..+|...|..++|.+.-+-+..+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456777778888888777777775 3222 234455667778888888887776555543
No 345
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0035 Score=63.75 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=59.9
Q ss_pred ceEEeccCCCcCCh------HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ce
Q 004006 152 GKIFVGNLPNWIKK------HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GR 224 (779)
Q Consensus 152 ~~~~v~~l~~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~ 224 (779)
..++|.|.|---.. .-|.++|+++|.|....+..+ .. |+++||.|++|.+..+|+.|++.+ ||+.|+ .+
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~-e~-ggtkG~lf~E~~~~~~A~~aVK~l--~G~~ldknH 134 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPID-EE-GGTKGYLFVEYASMRDAKKAVKSL--NGKRLDKNH 134 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccC-cc-CCeeeEEEEEecChhhHHHHHHhc--ccceecccc
Confidence 48899998764222 245689999999999988877 44 559999999999999999999999 999995 55
Q ss_pred EEEEEe
Q 004006 225 VLTVKL 230 (779)
Q Consensus 225 ~~~v~~ 230 (779)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 555543
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=1.5 Score=47.74 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=71.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
|+.+.+.+.+++|++.-+..... .+ -...+...|..|.-.|++++|-...-.|... +..-|...+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 67888889999999887765433 33 3457888889999999999999998888764 677787777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (779)
++..... .-+.......+...|..++..+..
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 7665433 223333333455566666666554
No 347
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.58 E-value=0.0056 Score=42.26 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=40.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHH
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 211 (779)
.|-|.|.+.+.. +++...|..||.|.++.+-.+ ..+.+|.|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-------CcEEEEEECCHHHHHhhC
Confidence 566777776655 445558889999999877633 569999999999999884
No 348
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.56 E-value=0.17 Score=52.02 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
..+-..|..+..+.|+.++|++.|.+|.+..... +..+...|+.++...+.+.++..++.+-.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3334456666667777777777777776543322 3346667777777777777777777765443
No 349
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.56 E-value=0.015 Score=43.93 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|.+.+++++|.++++.+...+ +.+...|..++..+.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555666666666666665554 44555555566666666666666666666655
No 350
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.50 E-value=0.057 Score=45.55 Aligned_cols=102 Identities=11% Similarity=0.201 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004006 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (779)
Q Consensus 645 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (779)
|..++..+|.++++.|+.+....+++..-. +..+... ..+. .-......|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 455666677777777777666666654432 2111100 0000 0112234577777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 004006 725 GWARRGDVWEAADLMQQMKQE-GVQPDVHTYTSFINACKCSKS 766 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~a~~~~g~ 766 (779)
+|+..|++..|+++++...+. ++..+..+|..|+.-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 888888888888888776653 666677788877777666544
No 351
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.50 E-value=1.1 Score=45.31 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 689 (779)
..+|..+++...+..-++.|..+|-++.+.+ +.++...++.++..++ .|+...|..+|+--+.. +..+..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4456666666666666677777777777666 4455666666665544 46666777777654443 1223333344555
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 690 ACCKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACK 762 (779)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 762 (779)
.+...++-..|..+|+..+.. +..+ ..+|..+|.-=..-|+...+..+-++|.+ +.|-..+...+.+-|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 666667777777777755432 1222 45677777766777777777777666665 3444444444444443
No 352
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.49 E-value=0.99 Score=44.39 Aligned_cols=200 Identities=15% Similarity=0.095 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH----HHHCC-CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC---CHh
Q 004006 297 REFGLMVNYYARRGDMHRARQTFEN----MRARG-IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-GIEM---SLV 367 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~---~~~ 367 (779)
.++..+..+..+.|.+++++..--- +.+.. -.--...|..+.+++-+.-++.+++.+-..-... |..+ .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3567778888888888777653221 11110 0001234555555555555666666555444432 1111 123
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC-CCh---
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG--ID-API--- 436 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~--- 436 (779)
...++..++...+.++++++.|+.+.+.- ......++..|...|.+..++++|.-...+..+.- +. .|.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 44556677777777888888888776532 12233466677777777777777766555444321 11 111
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 437 ---DIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 437 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
.+...|.-++...|+...|.+..++..+. |-.+ -......+.++|...|+.+.|+.-|++
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12223334455555555555555544322 2111 112233445555555665555555444
No 353
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.31 Score=46.71 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=73.6
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (779)
...|++.+|..+|+........ +...-..++.+|...|+++.|..+++.+..............-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3455666666666655554322 345555566666666666666666665544321111111122233344444444444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--GFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
++-.++-.. +.|...-..+...|...|+.+.|++.+-.+.+. |.. |...-..|+..+.-.|..+.
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 444444332 335566666667777777777777766655543 332 44445556666555554433
No 354
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.47 E-value=0.89 Score=43.66 Aligned_cols=124 Identities=18% Similarity=0.100 Sum_probs=61.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGI--SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRM 697 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (779)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.++...........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44555555555555555533111 0122223333333445556666666666655543111344555555566666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 698 QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
+.|...+....... +.....+..+...+...+..+++...+.+..+
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666665542 11233344444444455556666666666554
No 355
>PRK11906 transcriptional regulator; Provisional
Probab=96.45 E-value=0.17 Score=52.02 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004006 591 EMKRALEIFDMMRRS-GCIPT-VHTFNALILGLVEK---------RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL 659 (779)
Q Consensus 591 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 659 (779)
..+.|+.+|.+.... ..+|+ ...|..+..++... ....+|.++-++.++.+ ..|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356777788887721 12333 44444444333321 22345566666666665 55666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 004006 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF---VYNILIDGWARRGDVWEAA 736 (779)
Q Consensus 660 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 736 (779)
++++.|..+|++....+ +....+|......+..+|+.++|.+.+++..+.+ |... +....++.|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcCC-chhhhH
Confidence 77777777777777765 3455566666666667777777777777766543 3222 222223334433 345666
Q ss_pred HHHHH
Q 004006 737 DLMQQ 741 (779)
Q Consensus 737 ~~~~~ 741 (779)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 65544
No 356
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.14 Score=49.37 Aligned_cols=153 Identities=8% Similarity=-0.014 Sum_probs=93.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHHhcCCH
Q 004006 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH--TY--TTIMHGYASLGDT 662 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~--~~li~~~~~~g~~ 662 (779)
...|++.+|-..++++++.-+ .|...++..-.+|+.+|+.+.-...+++++.. ..+|.. .| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 445666666667777776533 36667776677777788777777777776643 123332 22 2222344567778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 004006 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR----NTFVYNILIDGWARRGDVWEAADL 738 (779)
Q Consensus 663 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 738 (779)
++|.+.-++..+.+ +.|.-...++...+...|+++++.++..+-... ... -...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888887777776 556667777777777778888887777665431 010 011222223334455677888888
Q ss_pred HHHHH
Q 004006 739 MQQMK 743 (779)
Q Consensus 739 ~~~m~ 743 (779)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 77644
No 357
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.44 E-value=0.02 Score=43.29 Aligned_cols=55 Identities=24% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
.|.+.+++++|+++++.++..+.. +...|.....+|.+.|++++|.+.|+++.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344445555555555555444322 4444444445555555555555555554443
No 358
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.42 E-value=0.32 Score=40.25 Aligned_cols=140 Identities=16% Similarity=0.281 Sum_probs=80.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 666 (779)
.-.|..++..++..+.... -+..-+|.+|.-....-+-+-..+.++..-. .-|. ..+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHH
Confidence 3457777777877777664 2455566666555544444444444444322 1111 1234444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (779)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (779)
..+..+ + .+.......+..+...|+-+.-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.++.++|
T Consensus 77 ~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444332 1 133345666778888888888888888886533 6788888889999999999999999999998888
Q ss_pred CC
Q 004006 747 VQ 748 (779)
Q Consensus 747 ~~ 748 (779)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 359
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.42 E-value=0.092 Score=53.79 Aligned_cols=64 Identities=16% Similarity=-0.001 Sum_probs=42.6
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-H---hHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-L---VTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+...|+.+..+|.+.|++++|+..|++.++.+ |+ . .+|..+..+|.+.|++++|+..|+++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567777777777777777777777766643 33 2 34677777777777777777777776654
No 360
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.39 E-value=1.4 Score=50.48 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 004006 472 ISYGCLINLYTKIG--KVSKALEVSKVMKS 499 (779)
Q Consensus 472 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 499 (779)
.-...+|..|.+.+ .++.|+........
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34456677777777 67777776666654
No 361
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.35 E-value=0.18 Score=44.35 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 405 GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
..++..+...|++++|+++++.+...+ +.+...|..+|.+|...|+...|+++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444555555555555555555553 445555555555555555555555555554
No 362
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.30 E-value=0.0051 Score=59.35 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=65.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCC-ee--EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGP-IK--NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~-i~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+|-..+||+..+-++|..+|..|-. |. .|+++.+ ..|+..|-|||.|.+.++|.+|...+ +.+...+|.|.|
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N--~qGrPSGeAFIqm~nae~a~aaaqk~--hk~~mk~RYiEv 356 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN--GQGRPSGEAFIQMRNAERARAAAQKC--HKKLMKSRYIEV 356 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc--CCCCcChhhhhhhhhhHHHHHHHHHH--HHhhcccceEEE
Confidence 48999999999999999999998864 43 4888874 67999999999999999999999998 777778999887
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
--+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 543
No 363
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.069 Score=53.34 Aligned_cols=140 Identities=13% Similarity=0.035 Sum_probs=90.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
-.+.|.+.|+|..|...|++++.. +. |.+.-+.++...+. . .-..+++.|..+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE-A-------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhhhh
Confidence 468899999999999999987753 00 00111112221111 1 123456777788888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK-CLIVFE 460 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 460 (779)
+.+|++.-++.++.+.. |+...+.-..+|...|+++.|+..|+++.+.. +.|-.+-+.|+.+..+...... ..++|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887654 78888888888888888888888888888763 3344555555555444444333 345555
Q ss_pred HHHH
Q 004006 461 RLKE 464 (779)
Q Consensus 461 ~~~~ 464 (779)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 5543
No 364
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.065 Score=53.48 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.+++.+..+|.+.+++.+|++..++.++.+ +.|.-...--..+|...|+++.|+..|.++++..+. |..+-..|+.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456677777888888888888888888765 347777777788888888888888888888877544 555555555554
Q ss_pred HhcCChHH-HHHHHHHHHHc
Q 004006 412 CQTRNMER-AEALVRDMEEE 430 (779)
Q Consensus 412 ~~~g~~~~-A~~~~~~~~~~ 430 (779)
.+.....+ ..++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44444433 35666666653
No 365
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.25 E-value=0.018 Score=48.56 Aligned_cols=56 Identities=21% Similarity=0.437 Sum_probs=44.0
Q ss_pred HHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCCc
Q 004006 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (779)
Q Consensus 167 ~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~~ 234 (779)
+|.+.|+.||.+.-+|++.+ .-.|+|.+-.+|.+|+.. +|..++|+.|+|.+..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~---------~mwVTF~dg~sALaals~---dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD---------TMWVTFRDGQSALAALSL---DGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT---------CEEEEESSCHHHHHHHHG---CCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC---------eEEEEECccHHHHHHHcc---CCcEECCEEEEEEeCCcc
Confidence 67788999999888888754 678999999888888753 999999999999986544
No 366
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.23 E-value=0.0091 Score=45.87 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 682 FTYEALLKACCKSGRMQSALAVTKEMSAQ--KIP---RN-TFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.+++.+..+|...|++++|+.++++..+. ... ++ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666666666666666666665532 001 11 33566667777777777777777766543
No 367
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.54 Score=43.52 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
|+.-..+|..+|..+.|-..+++.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 333444556666655555555543
No 368
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.19 E-value=0.034 Score=49.09 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTY 754 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~ 754 (779)
+...++..+...|++++|..+++.+...+ +-+...|..+|.+|...|+..+|+++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45667777778888888888888888766 66777888888888888888888888887653 4777776553
No 369
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.19 E-value=0.016 Score=55.88 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=64.2
Q ss_pred ceEEec--cCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEE
Q 004006 152 GKIFVG--NLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLT 227 (779)
Q Consensus 152 ~~~~v~--~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~ 227 (779)
..|.+. |--+.+|-+-|..+....|.|..|.|.+. + --.|.|||++.+.|++|.++| ||..| +--.++
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk---n---gVQAmVEFdsv~~AqrAk~al--NGADIYsGCCTLK 192 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK---N---GVQAMVEFDSVEVAQRAKAAL--NGADIYSGCCTLK 192 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec---c---ceeeEEeechhHHHHHHHhhc--ccccccccceeEE
Confidence 344444 44457889999999999999999988863 2 347999999999999999999 99998 567899
Q ss_pred EEecCCcchh
Q 004006 228 VKLDDGRRLK 237 (779)
Q Consensus 228 v~~~~~~~~~ 237 (779)
|++|++.++.
T Consensus 193 IeyAkP~rln 202 (494)
T KOG1456|consen 193 IEYAKPTRLN 202 (494)
T ss_pred EEecCcceee
Confidence 9999988654
No 370
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.01 Score=45.64 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=13.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (779)
+++.+...|...|++++|+..|+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 371
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.0059 Score=55.83 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=63.0
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC--ceeeceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG--VEFHGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g--~~~~~~~~~v~ 229 (779)
..|||.||...++.+.+.+.|+.||+|....++.| +.|+..|-++|+|.+.-.+.+|...+...| ....+++..|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD--~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD--DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec--ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 58999999999999999999999999997777776 458888999999999999999998873222 22356666664
Q ss_pred e
Q 004006 230 L 230 (779)
Q Consensus 230 ~ 230 (779)
-
T Consensus 110 P 110 (275)
T KOG0115|consen 110 P 110 (275)
T ss_pred h
Confidence 3
No 372
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.12 E-value=0.18 Score=51.75 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
.+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|++++|++.+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467789999999999999999999999999874 443 35999999999999999999999999885
No 373
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.10 E-value=0.006 Score=59.65 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=59.1
Q ss_pred eEEeccCCCcCChHHHHHHHhcc--CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce-eeceEEEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FHGRVLTVK 229 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~-~~~~~~~v~ 229 (779)
++|+|||++.++..+|+.+|... |.-.. .++. .||+||...+..-+.+|++.+ +|.. +.|+++.|.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~-fl~k--------~gyafvd~pdq~wa~kaie~~--sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLVK--------SGYAFVDCPDQQWANKAIETL--SGKVELQGKRQEVE 71 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcc-eeee--------cceeeccCCchhhhhhhHHhh--chhhhhcCceeecc
Confidence 78999999999999999999653 21111 1222 599999999999999999998 8876 799999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
..-++..+
T Consensus 72 ~sv~kkqr 79 (584)
T KOG2193|consen 72 HSVPKKQR 79 (584)
T ss_pred chhhHHHH
Confidence 87665433
No 374
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.09 E-value=0.12 Score=54.37 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=98.6
Q ss_pred HHHHHcCChHHHHHHHH--HHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 304 NYYARRGDMHRARQTFE--NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
....-.|+++++.++.+ .+.. .+ ...-.+.++..+-+.|-.+.|+++... .. +-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 44445677888766664 1111 11 244578888888888888888876533 22 23445567888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (779)
++.|.++-++. .+...|..|.....+.|+++-|+++|.+... +..|+-.|...|+.++..++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88888764432 2667888888888888888888888887654 56777788888888877777766
Q ss_pred HHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 462 LKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 462 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
....| -++....++.-.|+.++..+++..
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66553 245556666677888887777654
No 375
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.05 E-value=1.7 Score=42.80 Aligned_cols=226 Identities=12% Similarity=0.124 Sum_probs=129.5
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHccCChHHHHHHHHH----HHHcC-CCCCHhHHHHHHHHHHccC
Q 004006 308 RRGDMHRARQTFENMRARG--IEPTLHVYTNLIHAYAVGRDMEEALSCVRK----MKEEG-IEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g-~~~~~~~~~~l~~~~~~~g 380 (779)
+..+.++|+..+..-+.+- ..--..++..+..+..+.|.+++++..--. ..+.. -..-.+.|..+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444320 000123455566777777877776653221 11110 0112345667777777777
Q ss_pred CHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCC
Q 004006 381 NAEAADHWFEEAKERHA----TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-----APIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 381 ~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~ 451 (779)
++.+++.+-..-..... ..-......+..++...+.++++++.|+...+.-.. ....++-.|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 77777766555443211 112234556778888888899999988877763211 123567788888888888
Q ss_pred HHHHHHHHHHHHH----CCCCCCHh-hHH-----HHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHH
Q 004006 452 EEKCLIVFERLKE----CGFSPSII-SYG-----CLINLYTKIGKVSKALEVSKVMKS----SGIKH-NMKTYSMLINGF 516 (779)
Q Consensus 452 ~~~a~~~~~~~~~----~g~~~~~~-~~~-----~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~ll~~~ 516 (779)
+++|+-+..+..+ .++. |.. -|. .|..++...|.+..|.+.-++..+ .|-++ -......+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 8888877665543 2332 221 222 344556667777777666655443 33222 123445566778
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004006 517 LKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~ 534 (779)
-..|+.+.|+.-|++...
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 888888888877776543
No 376
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=1.3 Score=43.12 Aligned_cols=155 Identities=12% Similarity=0.009 Sum_probs=103.0
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCChhhHHHHH--HHHHhcCC
Q 004006 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER-HATLNAIIYGNII--YAQCQTRN 416 (779)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~--~~~~~~g~ 416 (779)
.+.-.|+..+|...++++++. .+-|...+...-.+|...|+-+.-...++++.-. +......+|..=+ -++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 344568888888888888876 5557788888888888888888888888888765 2221222333222 33447788
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG---FSPSIISYGCLINLYTKIGKVSKALEV 493 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (779)
+++|++.-++..+.+ +.|.....++.+.+...|++.++.++..+-...- .-.-..-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 889988888888876 6677777888888888888888888766543210 000111222334445556777777777
Q ss_pred HHH
Q 004006 494 SKV 496 (779)
Q Consensus 494 ~~~ 496 (779)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 754
No 377
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.94 E-value=0.004 Score=57.10 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=50.2
Q ss_pred HHHHHHHh-ccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 166 HLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 166 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+++...|+ +||.|+++.|..+ ..-.-.|=++|.|...++|++|+..| ||..+.|++|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N--l~~hl~GNVYV~f~~Ee~ae~a~~~l--nnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN--LGDHLVGNVYVKFRSEEDAEAALEDL--NNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc--cchhhhhhhhhhcccHHHHHHHHHHH--cCccccCCcceeeec
Confidence 34444455 8999999877643 22333899999999999999999999 999999999999876
No 378
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.93 E-value=2.5 Score=43.76 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=102.1
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 364 MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM 443 (779)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 443 (779)
.|.....+++..+....++.-++.+..+|.+.| .+...|..++.+|... .-++-..+++++.+..+. |...-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 456666777777777777777777777777753 2666777777777776 455666777777776432 333344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--C---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSP--S---IISYGCLINLYTKIGKVSKALEVSKVMKSS-GIKHNMKTYSMLINGFL 517 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~ 517 (779)
..|.+ ++.+++...|.++...-+.. + ...|..+... -..+.+..+.+..++... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 67777777777766542210 1 1123333321 134455555555555432 33333444555556666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
...++++|++++..+.+.+-+ |...-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 677777777777777665433 4444444444
No 379
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=1.1 Score=43.27 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=34.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
......|++.+|...|+........ +......++.+|...|+.+.|..++..+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 3455667777777777777665444 455556666666666666666666666544
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.88 E-value=4.1 Score=45.76 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=25.9
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC-C-------cccHHHHHHHHHhcCCHHHHHHHHH
Q 004006 552 CGMGNMDRAIHIVKEMQKERHRP-T-------SRTFMPIIHGFARAGEMKRALEIFD 600 (779)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 600 (779)
+-.+++..|...++.+....... + ...+....-.+...|+.+.|+..|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34667777777777776542111 1 1111122222344677777877776
No 381
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.16 Score=48.30 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=25.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
+..|+.++...|++++|..+|..+.+..+. .-...+..|+.+..+.|+.++|..+|+++.+
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444444433211 1123344444444444444444444444444
No 382
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.74 E-value=0.0085 Score=59.00 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=54.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecC---CC-CCCC--------CcceEEEEeCCHHHHHHHHHHh
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG---YN-NFEK--------NVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~-~~~~--------~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
++++|.+-|||.+-.-+.|.++|+.+|.|+.|+|+.- .. ..|. .+-||||+|+..+.|.+|.+.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 5679999999999989999999999999999999864 00 1122 2568999999999999999887
No 383
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.69 E-value=2.1 Score=40.99 Aligned_cols=203 Identities=16% Similarity=0.160 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 004006 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRD-GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (779)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 584 (779)
...+......+...+++..+...+...... ........+..+...+...+++..+...+.......... .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555666666666665555431 112233445555555556666666666666666543332 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 004006 585 -GFARAGEMKRALEIFDMMRRSGC--IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLG 660 (779)
Q Consensus 585 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g 660 (779)
.+...|+++.+...+.+...... ......+......+...++++.+...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 56677777777777777654221 1123333334444666778888888888877653 22 3566777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 661 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
+++.+...+......... ....+..+...+...+.++++...+.+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888776422 34455555555556667888888888777653
No 384
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.68 E-value=0.034 Score=47.99 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=60.6
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee--ceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~--~~~~ 226 (779)
+...++.|.+||..-+..||+..+.+.|.|....+.+| |+|.|+|...++.+-|+..| +...+. |...
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--------g~GvV~~~r~eDMkYAvr~l--d~~~~~seGe~~ 182 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--------GVGVVEYLRKEDMKYAVRKL--DDQKFRSEGETA 182 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--------cceeeeeeehhhHHHHHHhh--ccccccCcCcEe
Confidence 33458999999999999999999999999999999987 79999999999999999998 666653 4444
Q ss_pred EEEe
Q 004006 227 TVKL 230 (779)
Q Consensus 227 ~v~~ 230 (779)
.+..
T Consensus 183 yirv 186 (241)
T KOG0105|consen 183 YIRV 186 (241)
T ss_pred eEEe
Confidence 4433
No 385
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.68 E-value=0.38 Score=41.94 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=48.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLH---VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
....++.|+-..|+..|+++-.....|-.. .--.-.-.+...|.|+......+-+...+-+........|.-+-.+.
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka 180 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA 180 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence 344556677777777777765542222221 01111123445566666666665555444444444445555555566
Q ss_pred CCHHHHHHHHHHHHH
Q 004006 380 GNAEAADHWFEEAKE 394 (779)
Q Consensus 380 g~~~~A~~~~~~~~~ 394 (779)
|++.+|..+|..+..
T Consensus 181 gd~a~A~~~F~qia~ 195 (221)
T COG4649 181 GDFAKAKSWFVQIAN 195 (221)
T ss_pred cchHHHHHHHHHHHc
Confidence 666666666666554
No 386
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.68 E-value=4.4 Score=44.68 Aligned_cols=176 Identities=18% Similarity=0.102 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-----ccCChHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHHcc
Q 004006 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYA-----VGRDMEEALSCVRKMKE-------EGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~l~~~~~~~ 379 (779)
..+|.+.++.....| +......+..+|. ...|.+.|+.+|+.+.+ .| ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888877775 4444444443333 44688888888888766 43 333455566666653
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----
Q 004006 380 G-----NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT---RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT---- 447 (779)
Q Consensus 380 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 447 (779)
. +.+.|+.+|.+..+.+. ...-..+..+|..- .+..+|.++|....+.|. ...+..+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 3 45567777777766542 23333333333322 345677777777766652 222333332222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004006 448 IIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG 501 (779)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (779)
...+.+.|..++.+..+.| .+....-...+..+.. +..+.+.-.+..+.+.+
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2235566666666666655 1111111112222222 55555555555555443
No 387
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.67 E-value=3.2 Score=43.01 Aligned_cols=87 Identities=8% Similarity=0.024 Sum_probs=56.5
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC-HHHHHHHHHHHHH
Q 004006 316 RQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKE 394 (779)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 394 (779)
..+|.++..+ +.-|...|...|..+-+.+.+.+.-.+|.+|+... +-++..|-....-....+. ++.|..+|.+.+.
T Consensus 91 v~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 91 VFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 3455555443 33488888888888888888888888888887753 2245555554444444443 8888888888887
Q ss_pred cCCCCChhhHH
Q 004006 395 RHATLNAIIYG 405 (779)
Q Consensus 395 ~~~~~~~~~~~ 405 (779)
.++. +...|.
T Consensus 169 ~npd-sp~Lw~ 178 (568)
T KOG2396|consen 169 FNPD-SPKLWK 178 (568)
T ss_pred cCCC-ChHHHH
Confidence 7544 444443
No 388
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.58 E-value=1 Score=46.60 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 004006 650 TTIMHGYASLGDTGKAFEYFTKLRNEGL-ELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT-FVYNILI 723 (779)
Q Consensus 650 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 723 (779)
..+..++.+.|+.++|++.+++|.+... ..+..+...|+.++...+++.++..++.+..+...+.+. .+|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 4566677788888888888888875432 234557778888888888888888888887554433333 3455433
No 389
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.56 E-value=2.8 Score=41.59 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 403 IYGNIIYAQCQTRNME---RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 403 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
+...++.+|...+..+ +|..+++.+.... .....++..-++.+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555544433 3333444443321 222333333444444455555555555555543
No 390
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=0.75 Score=49.36 Aligned_cols=176 Identities=16% Similarity=0.090 Sum_probs=104.4
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHh----cCChHHHH
Q 004006 352 SCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA------IIYGNIIYAQCQ----TRNMERAE 421 (779)
Q Consensus 352 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~ 421 (779)
-+|.-++.. ++| ....++....-.|+-+.+++.+.+..+.+.-... ..|+..+..++. ..+.+.|.
T Consensus 178 G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 345555543 232 3445666666677777777777776654322121 223333333333 35577788
Q ss_pred HHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 422 ALVRDMEEEGIDAPIDIYH-MMMDGYTIIGNEEKCLIVFERLKEC--GF-SPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~--g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
+++..+.++ -|+...|. .-.+.+...|+.++|++.|++.... .. ......+--++-.+.-.+++++|.+.|..+
T Consensus 254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 888888776 34444443 3346777888888888888865431 11 112334455666678888888888888888
Q ss_pred HHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 004006 498 KSSGIKHNMKTYSMLIN-GFLKLKDW-------ANVFAVFEDVMR 534 (779)
Q Consensus 498 ~~~~~~~~~~~~~~ll~-~~~~~~~~-------~~a~~~~~~~~~ 534 (779)
.+.+ ..+..+|.-+.. ++...++. ++|..+|.++..
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8754 334444444333 34455666 888888887654
No 391
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.54 E-value=2.5 Score=42.05 Aligned_cols=47 Identities=13% Similarity=0.326 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHh--cC----CHHHHHHHHHHHHHC
Q 004006 559 RAIHIVKEMQKERHRPTSRTFMPIIHGFAR--AG----EMKRALEIFDMMRRS 605 (779)
Q Consensus 559 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~ 605 (779)
+.+.+++.|.+.|..-+..++.+....... .. ...++..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 334555556666555454444432222221 11 234455566666554
No 392
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.50 E-value=0.17 Score=53.29 Aligned_cols=133 Identities=15% Similarity=0.246 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
....+.++..+-+.|..+.|+.+...-.. -.....+.|+++.|.++.+++ .+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 45578889999999999999987665432 344556889999998875433 277899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
..+.|+++-|++.|.+... |..|+..|.-.|+.+.-.++.+.....|. ++....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 9999999999999998753 66777888999999998888888887762 56666777788998888
Q ss_pred HHHHHH
Q 004006 456 LIVFER 461 (779)
Q Consensus 456 ~~~~~~ 461 (779)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 393
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=9.2 Score=47.77 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=96.3
Q ss_pred HHHHHHHccCChHHHHHHHHH----HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 336 NLIHAYAVGRDMEEALSCVRK----MKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.+..+-.+.+.+.+|+..++. ..+. ......+..+...|+..++++....+...-.. .......|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHHHHHHH
Confidence 444556677888888888887 3332 12344455555688899998888877764111 12344455667
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-HHHHHHcCCHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCL-INLYTKIGKVSKA 490 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A 490 (779)
...|+++.|...|+.+.+.+ +.....++.++......|.++..+...+..... .......++++ +.+.-+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 78899999999999998874 334666777777777788888777766655543 12233333333 3444667777777
Q ss_pred HHHHH
Q 004006 491 LEVSK 495 (779)
Q Consensus 491 ~~~~~ 495 (779)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66654
No 394
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.44 E-value=6.8 Score=45.27 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL----YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (779)
.-.++.-.+.+.+.+|+.++. ++... |.....-+...+.+++|.-+|+..-+ ..-.+.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a 974 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKA 974 (1265)
T ss_pred HHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHH
Confidence 333444445555555555542 23333 33333444555666666666654322 1234556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVH--TFNALILGLVEKRQMEKAIEILDEMT 638 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (779)
|..+|+|++|+.+..++... .+.. +-..|+.-+...++.-+|-+++.+..
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 77777777777777666432 1222 22456666777777777777766654
No 395
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.43 E-value=1.1 Score=38.89 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004006 616 ALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695 (779)
Q Consensus 616 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (779)
.++..+.+.+.......+++.+...+ ..+...++.++..|++.+. .+..+.++. . .+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34445555555666666666655554 2444555666666655432 233333331 1 12233344666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 696 RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR-GDVWEAADLMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 696 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
.++++..++.++.. |...+..+... ++.+.|.+++++- -+...|..++..|..
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 66666666665522 11222223333 6677777766542 155566666666543
No 396
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.41 E-value=0.84 Score=39.76 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
++..+.+.|.....+..++.+...+. .+....|.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444444444444444444432 233444444444443
No 397
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=5.4 Score=43.76 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=68.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 338 IHAYAVGRDMEEALSCVRKMKEEGIEM---SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (779)
|+-+.+.+.+++|+++.+..... .+ -...+...+..+...|++++|-...-+|... +...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44456778899999887665542 22 3456788888888999999999988888754 667777777777776
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004006 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI 448 (779)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (779)
++......++ ....-..+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 6665443332 221112345667777766665
No 398
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.37 E-value=0.25 Score=41.68 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (779)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 689 (779)
|..++.++|.++++.|+.+....+++..-. +..+.. ...++ .-....+.|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 457889999999999999999888876542 222111 00000 1122345677777777777
Q ss_pred HHHHcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 004006 690 ACCKSGRMQSALAVTKEMSA-QKIPRNTFVYNILIDGWAR 728 (779)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 728 (779)
+|+..|++..|+++++...+ .+++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777778888777777754 4566667777666554443
No 399
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.30 E-value=6.5 Score=44.17 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=93.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHH--HHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 004006 587 ARAGEMKRALEIFDMMRRSGC-IP-----TVHTFNALI--LGLVEKRQMEKAIEILD--------EMTLAGISPNEHTYT 650 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~~li--~~~~~~~~~~~A~~~~~--------~m~~~~~~~~~~~~~ 650 (779)
+-.+++..+...+..+....- .+ ....+..++ -.+...|+.+.|+..|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889999999988875421 11 112222222 33445789999999997 344444333333332
Q ss_pred H--HHHHHHhcC--CHHH--HHHHHHHHHHc-CCC--CCHHHHHHH-HHHHHHcCC--hHHHHHHHHHHHh-C--CCCCC
Q 004006 651 T--IMHGYASLG--DTGK--AFEYFTKLRNE-GLE--LDVFTYEAL-LKACCKSGR--MQSALAVTKEMSA-Q--KIPRN 715 (779)
Q Consensus 651 ~--li~~~~~~g--~~~~--a~~~~~~~~~~-~~~--~~~~~~~~l-~~~~~~~g~--~~~A~~~~~~~~~-~--~~~~~ 715 (779)
. ++..+...+ +..+ +.++++.+... .-. .+..++..+ +.++..... ..++...+.+..+ . .+..+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 112222222 2223 66666665432 112 223333333 333432222 2344443332221 1 11111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--CHHHHHHHH-----HHHHhcCCcchHHHhHhhh
Q 004006 716 ---TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ-P--DVHTYTSFI-----NACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 716 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p--d~~~~~~l~-----~a~~~~g~~~~a~~~~~~m 777 (779)
...++.|...+. .|+..|..+.........-+ + ....|..+. +.+...|+.++|.+...++
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 223455555555 78877766655544322112 2 345564333 3477789999999887764
No 400
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.30 E-value=0.027 Score=34.69 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=29.6
Q ss_pred HHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004006 270 FRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ 317 (779)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (779)
|.++++.+|. +...|+.|...|...|++++|++
T Consensus 2 y~kAie~~P~---------------n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN---------------NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC---------------CHHHHHHHHHHHHHCcCHHhhcC
Confidence 7889999998 78889999999999999999863
No 401
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.27 E-value=0.47 Score=40.52 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
+...+..-.....+.|++++|++.|+.+..+-. .-...+.-.++.+|.+.+++++|...+++.++....--..-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 445555566667788889999999988887621 113456777888888888888888888888886543233444444
Q ss_pred HHHHHc
Q 004006 373 VGGFAK 378 (779)
Q Consensus 373 ~~~~~~ 378 (779)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 444443
No 402
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.17 E-value=0.37 Score=39.74 Aligned_cols=55 Identities=20% Similarity=0.111 Sum_probs=29.3
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+++..|+++.|++.|.+.+..- +-+...||.-..++.-.|+.++|++=+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3445555555555555555542 224555555555555555555555555555543
No 403
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.14 E-value=0.023 Score=55.02 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=53.9
Q ss_pred eEEeccCCCcCChHHHHHHHhcc----CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQF----GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
-|-..+||+++++.++.++|..- |..+.|-++. +..||..|-|||.|..+++|+.|+.. |...++-|.|.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlfa~ee~aq~aL~k---hrq~iGqRYIE 236 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLFACEEDAQFALRK---HRQNIGQRYIE 236 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEecCHHHHHHHHHH---HHHHHhHHHHH
Confidence 55667999999999999999742 3455666665 45699999999999999999999976 45455544443
No 404
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.11 E-value=6.7 Score=43.29 Aligned_cols=177 Identities=13% Similarity=0.057 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHH-----HHccCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhc
Q 004006 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGG-----FAKMGNAEAADHWFEEAKE-------RHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 414 (779)
..+|.++++...+.| +......++.+ +....+.+.|+.+|..+.+ .+ +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888876 44444444433 3355789999999999877 33 444666777777764
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH---
Q 004006 415 R-----NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNEEKCLIVFERLKECGFSPSIISYGCLINLYTK--- 483 (779)
Q Consensus 415 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--- 483 (779)
. +.+.|..++.+..+.|. ++.. ..+..+|..- .+..+|.++|....+.|.. ..+-.+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 56678888888887763 2222 2233333222 3567888888888777643 222223322222
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 484 -IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (779)
Q Consensus 484 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (779)
..+.+.|..++++.-+.| .+....-...+..+.. +.++.+...+..+...|.
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 236777778887777766 2222222222333333 666666666665555443
No 405
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.07 E-value=0.32 Score=46.29 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=68.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG--IDAPIDIYHMMM 443 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 443 (779)
.|+.-+..| +.|++.+|...|...++..+. ....+++-|+.++...|++++|..+|..+.+.- .+.-...+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555444 667788888888888776432 244567778888888888888888888887752 122345667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004006 444 DGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
.+....|+.++|..+|.++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888888888888877765
No 406
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.03 E-value=1.7 Score=36.10 Aligned_cols=57 Identities=9% Similarity=0.209 Sum_probs=25.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
.+....|+-+.-.+++.++.+. -.++......+..+|.+.|+..++.+++.+.-+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444455555555555555432 23444444555555555555555555555555444
No 407
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.01 E-value=4.2 Score=40.36 Aligned_cols=156 Identities=12% Similarity=0.137 Sum_probs=93.2
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCH------hhHHHHHHHHHccCChHHHHHHHHHHHHc----C----CCCC-----
Q 004006 307 ARRGDMHRARQTFENMRARG--IEPTL------HVYTNLIHAYAVGRDMEEALSCVRKMKEE----G----IEMS----- 365 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g----~~~~----- 365 (779)
.+.|+++.|..++.++.... ..|+. ..||.-...+.+..++++|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998887642 12222 13444444444433888888777765432 1 1122
Q ss_pred HhHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAE---AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (779)
..++..++.+|...+..+ +|.++++.+...... ...++..-+.++.+.++.+++.+.+.+|+..- ......+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 346677788888777654 566666666544322 45566566777777899999999999999862 2223344444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHC
Q 004006 443 MDGY---TIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 443 ~~~~---~~~g~~~~a~~~~~~~~~~ 465 (779)
+..+ .... ...+...++.+...
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHH
Confidence 4443 3322 33455555555443
No 408
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=1.4 Score=38.65 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=57.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChH
Q 004006 343 VGRDMEEALSCVRKMKEEGIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI---IYGNIIYAQCQTRNME 418 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 418 (779)
+.+..++|+.-|..+.+.|..- -+....-+.......|+...|...|+++-.....|-.. .-..-...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3455566666666665554331 11122223334455566666666666665432222111 1111122334555566
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 419 RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 419 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
......+-+...+.+.....-..|.-+-.+.|++.+|.++|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555554444333333444455555556666666666655544
No 409
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.89 E-value=0.46 Score=44.87 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=59.5
Q ss_pred CHhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 004006 470 SIISYGCLINLYTK-----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL----------------KDWANVFAV 528 (779)
Q Consensus 470 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 528 (779)
|..+|-.++..+.. .+.++-....++.|.+.|+..|..+|+.||+.+=+. .+-+-++.+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444332 244555555556666666666666666666555332 233557788
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 004006 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGN-MDRAIHIVKEMQK 569 (779)
Q Consensus 529 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 569 (779)
+++|...|+.||..+-..|++++.+.+- ..+..+++-.|.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 8888888888888888888888877765 3334444444443
No 410
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=7.4 Score=42.46 Aligned_cols=170 Identities=12% Similarity=0.106 Sum_probs=82.6
Q ss_pred HHHHHHcCChHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHcc---------C--C-----hHHHHHHHHHHHHcCCCCC
Q 004006 303 VNYYARRGDMHRARQTFENMR-ARGIEPTLHVYTNLIHAYAVG---------R--D-----MEEALSCVRKMKEEGIEMS 365 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~---------g--~-----~~~A~~~~~~m~~~g~~~~ 365 (779)
-..|.-.|+|++|+..--..- ...+..+...+.+++.-|... + . .++-..++++|+.+... +
T Consensus 66 SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~-d 144 (929)
T KOG2062|consen 66 SKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD-D 144 (929)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh-h
Confidence 467888899999988655542 223444555555555443321 1 1 23344556666654322 2
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHH-HHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEA-KERHATLNAIIYGNIIYAQCQTRN-MERAEALVRDMEEEGIDAPIDIYHMMM 443 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 443 (779)
...+ .++.......+ +.+++++ .+.+. +......++..+....+ .+--.++++.+.+.=.+....-|..+.
T Consensus 145 ~e~~-~aiGia~E~~r----ld~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc 217 (929)
T KOG2062|consen 145 NEYK-QAIGIAFETRR----LDIIEEAILKSDS--VIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVC 217 (929)
T ss_pred hHHH-HHHhHHhhhhh----HHHHHHHhccccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeee
Confidence 2222 22222222222 2233332 22221 22233333333333322 222334444444321122223356678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 482 (779)
++|.-..+.+.+..+++++.+.. .....|....+.|-
T Consensus 218 ~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~e 254 (929)
T KOG2062|consen 218 QCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLYE 254 (929)
T ss_pred eeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHhh
Confidence 88889999999999999998742 12345555555443
No 411
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.80 E-value=8.3 Score=42.76 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHH
Q 004006 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGY-ASLGDTGKAFEYFTKLRNEGLELDVF-TYEALLKACCKSGRMQSALAVT 704 (779)
Q Consensus 627 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 704 (779)
++.|...|.........+...+.......+ ..+++.+.++.+++.+...|.. +.. .|...++.-...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 445555555544331122222222222222 3456789999999988877632 333 5666666666778888888888
Q ss_pred HHHHhCCCCCC
Q 004006 705 KEMSAQKIPRN 715 (779)
Q Consensus 705 ~~~~~~~~~~~ 715 (779)
+.....-..++
T Consensus 521 R~ay~~~~~~~ 531 (881)
T KOG0128|consen 521 RKAYSQVVDPE 531 (881)
T ss_pred HHHHhcCcCch
Confidence 77765543443
No 412
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.78 E-value=0.55 Score=38.75 Aligned_cols=93 Identities=24% Similarity=0.185 Sum_probs=59.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHcc
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKM 379 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~ 379 (779)
..+++..|+++.|++.|...+..- .-....||.-..++.-.|+.++|++-+++.++..-... ...|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 456677888888888888877653 23667788888888888888888888887776432211 11233334445555
Q ss_pred CCHHHHHHHHHHHHHcC
Q 004006 380 GNAEAADHWFEEAKERH 396 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~ 396 (779)
|+-+.|..=|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666666665555544
No 413
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.73 E-value=0.035 Score=60.40 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=67.9
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee--ceE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GRV 225 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~--~~~ 225 (779)
......++||+|+.|+....|...|..||.|..|.+-.. --|++|.|++...++.|...| -|..|+ .+.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-------q~yayi~yes~~~aq~a~~~~--rgap~G~P~~r 522 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-------QPYAYIQYESPPAAQAATHDM--RGAPLGGPPRR 522 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-------CcceeeecccCccchhhHHHH--hcCcCCCCCcc
Confidence 344569999999999999999999999999998766432 569999999999999999999 999996 477
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
++|.++....
T Consensus 523 ~rvdla~~~~ 532 (975)
T KOG0112|consen 523 LRVDLASPPG 532 (975)
T ss_pred cccccccCCC
Confidence 8999987654
No 414
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.72 E-value=0.013 Score=56.37 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=64.0
Q ss_pred ceEEeccCCCcCChHHH---HHHHhccCCeeEEEEecCCCCCCCCc--ceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 152 GKIFVGNLPNWIKKHLV---MEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l---~~~f~~~g~i~~~~~~~~~~~~~~~~--g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.-+||-+|+...-++++ .+.|.+||.|..|.+.++......+. .-++|+|+..++|..||... +|..++|+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v--~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDV--DGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHh--hhHHhhhhhh
Confidence 46788899888776655 35899999999998888721111111 12699999999999999999 9999999999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+..+...+.
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 988876663
No 415
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.67 E-value=0.094 Score=34.68 Aligned_cols=28 Identities=11% Similarity=0.361 Sum_probs=13.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
|..+...|...|++++|+++|+++.+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4444455555555555555555555443
No 416
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.61 E-value=0.051 Score=64.29 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=6.0
Q ss_pred CCceeeceEEEEEe
Q 004006 217 DGVEFHGRVLTVKL 230 (779)
Q Consensus 217 ~g~~~~~~~~~v~~ 230 (779)
+|.++++ .++..|
T Consensus 1858 sG~YVDs-wlQy~w 1870 (2039)
T PRK15319 1858 SGAYVDS-WYQYGF 1870 (2039)
T ss_pred cceEEEE-EEEeeE
Confidence 4555554 333344
No 417
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.46 E-value=5.8 Score=39.47 Aligned_cols=130 Identities=17% Similarity=0.265 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--CC----CHHHHHHHHHHHHHcCCCC---CcccHHHHHHHHHhcCC-
Q 004006 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG--MG----NMDRAIHIVKEMQKERHRP---TSRTFMPIIHGFARAGE- 591 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~- 591 (779)
+++.+.+++.|.+.|+..+.++|-+....... .. ...+|..+|+.|++..... +...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556667777777777666555443332222 22 2456777888887765332 23334444322 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 592 ---MKRALEIFDMMRRSGCIPTV--HTFNALILGLVEKRQ--MEKAIEILDEMTLAGISPNEHTYTTIM 653 (779)
Q Consensus 592 ---~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~~~~~~~~~li 653 (779)
.+.++.+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.+++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 24556666666665554322 222222222111111 335666666777777666666555544
No 418
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.38 E-value=19 Score=45.20 Aligned_cols=312 Identities=9% Similarity=0.045 Sum_probs=170.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 371 IIVGGFAKMGNAEAADHWFEEA----KERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
++..+-.+++.+.+|+..++.- .+. ......+..+...|...++.|...-+...-... . .+...+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-----~-sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-----P-SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-----c-cHHHHHHHH
Confidence 5666777889999999999883 221 113345556666999999999888877642221 1 233455567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 004006 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSML-INGFLKLKDWANV 525 (779)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a 525 (779)
...|++..|...|+.+.+.+.. ....++.++......|.++..+-..+-...+. ......++.+ +.+--+.++|+..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 7899999999999999986422 36678888888788888888877666555432 2223333332 2333567777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHhCCCHH--HHHHHHHHHHHcCCCC---------CcccHHHHHHHHHhcCCH
Q 004006 526 FAVFEDVMRDGLKPDVVLYNNI--IRAFCGMGNMD--RAIHIVKEMQKERHRP---------TSRTFMPIIHGFARAGEM 592 (779)
Q Consensus 526 ~~~~~~~~~~g~~~~~~~~~~l--~~~~~~~g~~~--~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~ 592 (779)
...+. .. +..+|... +....+..+-+ .-...++.+...-+.+ -...|..++....-..-
T Consensus 1538 e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el- 1609 (2382)
T KOG0890|consen 1538 ESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL- 1609 (2382)
T ss_pred hhhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-
Confidence 76655 11 22233332 22222222211 1112222222211110 01122222222111110
Q ss_pred HHHHHHHHHHHHCCCCCC------HHHHHHHH---HHHHhcCCHHHHHHHHHH-HHHCCCC-----CCHHHHHHHHHHHH
Q 004006 593 KRALEIFDMMRRSGCIPT------VHTFNALI---LGLVEKRQMEKAIEILDE-MTLAGIS-----PNEHTYTTIMHGYA 657 (779)
Q Consensus 593 ~~a~~~~~~~~~~~~~~~------~~~~~~li---~~~~~~~~~~~A~~~~~~-m~~~~~~-----~~~~~~~~li~~~~ 657 (779)
....+... +..++ ...|.+-+ ..+.+ ..+-+--+++ +...... --..+|........
T Consensus 1610 ---~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1610 ---ENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred ---HHHHHHhh--ccCccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 00111111 11111 11222221 12222 2222222222 2221111 22467888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 658 SLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 658 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
+.|.++.|...+-.+.+.+ . ...+.-.++.+...|+-..|+.++++..+.+
T Consensus 1682 ~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8999999999888888776 2 3355667788889999999999999988654
No 419
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.37 E-value=0.077 Score=54.85 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=64.3
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhc-cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee---ec
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQ-FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HG 223 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~---~~ 223 (779)
...+..|+|.||-.-.|...|+.++.+ +|.|.+. -+| +-|..|||.|.+.+.|.+.+.+| ||... ++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD-----kIKShCyV~yss~eEA~atr~Al--hnV~WP~sNP 511 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD-----KIKSHCYVSYSSVEEAAATREAL--HNVQWPPSNP 511 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH-----HhhcceeEecccHHHHHHHHHHH--hccccCCCCC
Confidence 345679999999999999999999985 6667665 233 23779999999999999999999 99986 78
Q ss_pred eEEEEEecCCc
Q 004006 224 RVLTVKLDDGR 234 (779)
Q Consensus 224 ~~~~v~~~~~~ 234 (779)
+.|.+.|..-.
T Consensus 512 K~L~adf~~~d 522 (718)
T KOG2416|consen 512 KHLIADFVRAD 522 (718)
T ss_pred ceeEeeecchh
Confidence 89999887443
No 420
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.26 Score=54.51 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.7
Q ss_pred ceEEEEEe
Q 004006 223 GRVLTVKL 230 (779)
Q Consensus 223 ~~~~~v~~ 230 (779)
|+.+.|..
T Consensus 534 g~~~~v~c 541 (585)
T PRK14950 534 GKTCAVRC 541 (585)
T ss_pred CCceEEEE
Confidence 44444444
No 421
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.20 E-value=0.12 Score=34.10 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNL 337 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 337 (779)
.|..+...|.+.|++++|+++|+++++.... |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4555667777777777777777777766322 44444433
No 422
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.3 Score=54.12 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=3.2
Q ss_pred eceEEEEE
Q 004006 222 HGRVLTVK 229 (779)
Q Consensus 222 ~~~~~~v~ 229 (779)
.|..+.+.
T Consensus 499 ~~~~l~l~ 506 (585)
T PRK14950 499 EKNTLTLS 506 (585)
T ss_pred cCCEEEEe
Confidence 34444443
No 423
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.08 E-value=1.8 Score=37.01 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=22.6
Q ss_pred ccCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 343 VGRDMEEALSCVRKMKEEGI--EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+.|++++|.+.|+.+..+-. +-.......|+.+|.+.+++++|+..+++.++.+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34445555444444443210 1122333344444444444444444444444443
No 424
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.81 Score=44.05 Aligned_cols=135 Identities=17% Similarity=0.172 Sum_probs=93.6
Q ss_pred cchhhhhhH-HHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHh
Q 004006 257 STWHKEREW-HRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARG---IEPTLH 332 (779)
Q Consensus 257 ~~~~~~~~~-a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 332 (779)
|++-.+++| ++..+.-.+..-.. .|...|.+....+..+...++..-....+.+.++.++-++...- ..+ ..
T Consensus 27 S~fs~e~~w~~r~~~~~kla~~g~---~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~-~~ 102 (418)
T KOG4570|consen 27 SAFSDEHKWEAREKEHYKLADLGS---LMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLR-NW 102 (418)
T ss_pred HHhhhhhhhhHHHHHHHHHhcccc---cchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhc-cc
Confidence 334444433 77777755544332 45566777776677777777777777788888888887776531 011 12
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+-..+++.|.+ -+.++++.++..=+.-|+-+|.++++.+++.+.+.+++.+|..+.-.|..+.
T Consensus 103 ~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 103 TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 23344455544 3567888888888889999999999999999999999999998887777653
No 425
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.75 E-value=0.31 Score=36.55 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=40.6
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
.+|--..|......||.++|+.||.|. |..+.| .-|||...+.+.+..++..+
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d--------TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND--------TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT--------TEEEEEECCCHHHHHHHHHH
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC--------CcEEEEeecHHHHHHHHHHh
Confidence 344444999999999999999999976 666655 57999999999999999887
No 426
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.73 E-value=10 Score=39.60 Aligned_cols=180 Identities=9% Similarity=0.095 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (779)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 619 (779)
|....-+++..+.......-...+..+|..-|- +-..+..++.+|..+ .-++-..+++++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 555666777888877778778888888877653 455677788888877 556777888888887654 5544455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGISP-----NEHTYTTIMHGYASLGDTGKAFEYFTKLRN-EGLELDVFTYEALLKACCK 693 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 693 (779)
.|-+ ++.+++..+|.++...-+.- -...|..|...- ..+.+..+.+..++.. .|..--.+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5544 77788888888877543221 123455554321 3457777777777764 3444556677777788888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004006 694 SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA 727 (779)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (779)
..++.+|++++..+.+.+ ..|...-..++..+.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 889999999999888776 455555555555544
No 427
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.72 E-value=0.035 Score=60.34 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=68.8
Q ss_pred hhhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 145 ~~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
..+...+.+||+|||...+++.+++..|..+|.|.+|.|-+-+. +.-.-||||.|.+.+.+-+|...+ .|..|..-
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e~--s~~~I~~g 441 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFEE--SGPLIGNG 441 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC--CcccchhhhhhhccccCcccchhh--cCCccccC
Confidence 34556667999999999999999999999999999999876422 333569999999999999999888 88888655
Q ss_pred EEEEEecC
Q 004006 225 VLTVKLDD 232 (779)
Q Consensus 225 ~~~v~~~~ 232 (779)
.+++.+..
T Consensus 442 ~~r~glG~ 449 (975)
T KOG0112|consen 442 THRIGLGQ 449 (975)
T ss_pred cccccccc
Confidence 66666653
No 428
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.68 E-value=0.52 Score=44.54 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004006 609 PTVHTFNALILGLVE-----KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT 683 (779)
Q Consensus 609 ~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 683 (779)
.|..+|-..+..+.. .+.++=....++.|.+.|+.-|..+|+.|+..+-+-.- .|. .+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 355666666655543 23455555556666666666666677666665433211 111 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 004006 684 YEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDV-WEAADLMQQMK 743 (779)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 743 (779)
+..+.-.|-+. -+-+..++++|...|+.||.++-..|+++|.+.+.. .+...++-.|-
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 12222122221 245678888888888888888888888888887753 23333333343
No 429
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.59 E-value=0.2 Score=45.30 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=47.6
Q ss_pred hHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC--CceeeceEEEEEecCCc
Q 004006 165 KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRVLTVKLDDGR 234 (779)
Q Consensus 165 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--g~~~~~~~~~v~~~~~~ 234 (779)
...|+++|..|+.+..+...+. .+-..|.|.+.+.|.+|...+ + +..+.|..++|.++...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s-------FrRi~v~f~~~~~A~~~r~~l--~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS-------FRRIRVVFESPESAQRARQLL--HWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT-------TTEEEEE-SSTTHHHHHHHTS--T--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC-------CCEEEEEeCCHHHHHHHHHHh--cccccccCCCceEEEEcccc
Confidence 4788999999999999888876 678899999999999999998 8 99999999999988444
No 430
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.46 E-value=9 Score=43.71 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 658 (779)
.|+.....+-++.+++.+....-..+....+.++..|..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 455556666777777777665545566666666666643
No 431
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=93.32 E-value=11 Score=38.63 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
.|+.-|...|+..+|..+++++---- --..+++.+++.+.-+.|+-...+.+++..
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34444444444444444444432110 113334444444444444444344444433
No 432
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.11 E-value=6.9 Score=35.86 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=77.4
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG-IDAPIDIYHMMMD 444 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~ 444 (779)
..+||.|.--+...|+++.|.+.|+...+.++..+-...+ -+.++.--|++.-|.+-|-..-+.+ ..|-...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN-Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc-cceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5567777777777788888888888877776553333333 2333334577777776666655543 1222222322221
Q ss_pred HHHhcCCHHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHH
Q 004006 445 GYTIIGNEEKCLI-VFERLKECGFSPSIISYGCLINLYT-KIGKVSKALEVSKVMKSSGIKHN-------MKTYSMLING 515 (779)
Q Consensus 445 ~~~~~g~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~ll~~ 515 (779)
+.-+..+|.. +.++..+. |..-|...|..|. ..=..+. +++++.... .-+ +.+|--|...
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKADA-TDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Confidence 2233444443 33333332 3344433332222 1111111 222222110 101 2345555666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 004006 516 FLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 516 ~~~~~~~~~a~~~~~~~~~~ 535 (779)
|...|+.++|..+|+-.+..
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 66677777777777766654
No 433
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.10 E-value=1 Score=40.96 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
+..+..+...|++.|+.++|++.|.++...-..+ -...+-.+|......+++..+...+.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3457778889999999999999999987763322 234567777777788888888877766543
No 434
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.04 E-value=8.7 Score=36.82 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=47.3
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
=|-|-+.++. .-..+..+|++||.|.+... ++...+-+|.|.+..+|++|+.. ||+.|+|..+
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~-------~~ngNwMhirYssr~~A~KALsk---ng~ii~g~vm 261 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVT-------PSNGNWMHIRYSSRTHAQKALSK---NGTIIDGDVM 261 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeec-------CCCCceEEEEecchhHHHHhhhh---cCeeeccceE
Confidence 3445566655 34567789999999876433 33357999999999999999976 8999988654
No 435
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.96 E-value=1.1 Score=43.34 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYTSF 757 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~~l 757 (779)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.. .|+.|-..+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666554 45555666666666666666666666665543 3666666655555
Q ss_pred HHH
Q 004006 758 INA 760 (779)
Q Consensus 758 ~~a 760 (779)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 436
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.94 E-value=8.9 Score=36.93 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYT 755 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 755 (779)
+++.....|..+|.+.+|.++.++....+ +.+...|-.|+..|+..|+--+|.+-++++.+ .|+.-|..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 45667778999999999999999998877 77888888999999999997778777777643 36666554443
No 437
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.71 E-value=0.17 Score=52.00 Aligned_cols=75 Identities=9% Similarity=0.249 Sum_probs=62.1
Q ss_pred cccceEEeccCCCcCChHHHHHHHhc--cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQ--FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
...|-+.+..+|..+..++++.+|+. |-.+.+|.+... .+ =||+|++..+|+.|.+.|...-+.|.||+|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------Cc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 45678899999999999999999975 888888887654 33 389999999999999998666777889988
Q ss_pred EEEec
Q 004006 227 TVKLD 231 (779)
Q Consensus 227 ~v~~~ 231 (779)
...+.
T Consensus 245 mARIK 249 (684)
T KOG2591|consen 245 MARIK 249 (684)
T ss_pred hhhhh
Confidence 76543
No 438
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.58 E-value=0.59 Score=35.14 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=35.5
Q ss_pred CcCChHHHHHHHhccCC-----eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 161 NWIKKHLVMEFFRQFGP-----IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 161 ~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
..++..+|..++..-+. |-.++|.. .|.||+- ..+.+..++..+ ++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---------~~S~vev-~~~~a~~v~~~l--~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---------NFSFVEV-PEEVAEKVLEAL--NGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---------S-EEEEE--TT-HHHHHHHH--TT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee---------eEEEEEE-CHHHHHHHHHHh--cCCCCCCeeEEEEEC
Confidence 35678888888876644 44677764 4999997 455788999999 999999999999865
No 439
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=3 Score=47.44 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=15.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 004006 302 MVNYYARRGDMHRARQTFENMR 323 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~ 323 (779)
-|..+.+.++|++|+.+...|.
T Consensus 1003 ~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1003 QLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHHhhccHHHHHHHHHHHh
Confidence 3555666677777777777766
No 440
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.51 E-value=7.3 Score=34.63 Aligned_cols=137 Identities=7% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHH
Q 004006 351 LSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN--MERAEALVRDME 428 (779)
Q Consensus 351 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 428 (779)
.+.++.+.+.|+.++...+..+++.+.+.|++.....++.--.-. |....-..+..+..... .+-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~----DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIP----DSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC----CcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004006 429 EEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (779)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (779)
.. +..+++.+...|++-+|+++....... +......++.+..+.++...-..+|+-..+++.+
T Consensus 90 ~~--------~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 90 TA--------YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred hh--------HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHh
No 441
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.32 E-value=0.48 Score=51.55 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=64.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEEEEe
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTVKL 230 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~v~~ 230 (779)
+.++-|..-..+...|-.+|+.||.|.+....+| ...+.|+|.+.++|..|..++ +|+.+ .|-+.+|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl--~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-------LNMALVSFSSVESAILALDAL--QGKEVSVTGAPSRVSF 370 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-------ccchhhhhHHHHHHHHhhhhh--cCCcccccCCceeEEe
Confidence 5666777778899999999999999999998888 678999999999999999999 99886 688999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
|+.-
T Consensus 371 ak~~ 374 (1007)
T KOG4574|consen 371 AKTL 374 (1007)
T ss_pred cccc
Confidence 8754
No 442
>PRK15313 autotransport protein MisL; Provisional
Probab=92.30 E-value=0.41 Score=53.56 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.8
Q ss_pred Cceeec
Q 004006 218 GVEFHG 223 (779)
Q Consensus 218 g~~~~~ 223 (779)
|..+++
T Consensus 771 G~YVDs 776 (955)
T PRK15313 771 GAYVDT 776 (955)
T ss_pred cEEEee
Confidence 444444
No 443
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.20 E-value=0.19 Score=30.94 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 705 KEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (779)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (779)
++.++.+ |.+...|+.|..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344433 445555666666666666655554
No 444
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.19 E-value=3.1 Score=37.50 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=49.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTL------HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
.+-+..+|++.+|..-|.+++.. .|.. ..|..-..++.+.+.++.|++-..+.++.+.. ......--..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 45556677777777777777664 2221 23444445555666666666666666655421 222223334455
Q ss_pred HccCCHHHHHHHHHHHHHcC
Q 004006 377 AKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~ 396 (779)
-+..++++|+.=|.++.+.+
T Consensus 179 ek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhC
Confidence 55666666666666665553
No 445
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=3.9 Score=46.57 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 004006 317 QTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (779)
.+|+++....+.|...-.-.-|..+.+.++|++|+.+...|.
T Consensus 983 ~L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 983 ILFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 355555554455555555555556667788888888888877
No 446
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.95 E-value=1.7 Score=39.53 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
..+..+...|.+.|+.++|++.|.++.+....+ -...+..++......+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777888888888888888877653332 244566777777777777777777766654
No 447
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.94 E-value=0.34 Score=30.25 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=13.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEA 392 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~ 392 (779)
|..|..+|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555666666666555553
No 448
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.85 E-value=13 Score=35.93 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHH------HcCC-----hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH-----
Q 004006 295 SRREFGLMVNYYA------RRGD-----MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK----- 358 (779)
Q Consensus 295 ~~~~~~~li~~~~------~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 358 (779)
...+|.+.+.++. ++|. ..+|+++|..++.+. --..+-+.+|.++....+..+|...+...+
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRK 198 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRK 198 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence 4455666666665 2221 478999999998763 234666778888888888887776654332
Q ss_pred --H-cCCCCCHhHHHHHHHHHH-cc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HhcCChHHHHHHHHH
Q 004006 359 --E-EGIEMSLVTYSIIVGGFA-KM----GNAEAADHWFEEAKERHATLNAIIYGNIIYAQ----CQTRNMERAEALVRD 426 (779)
Q Consensus 359 --~-~g~~~~~~~~~~l~~~~~-~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~ 426 (779)
. .|.. ..+|+.. ..|. .. -++.+-+...+.+.... .+..-+..++..| .....+..|...-+.
T Consensus 199 aLs~L~~n-e~vts~d--~~Ykld~~~~k~Dv~e~es~~rqi~~in--ltide~kelv~~ykgdyl~e~~y~Waederer 273 (361)
T COG3947 199 ALSRLNAN-EAVTSQD--RKYKLDAGLPKYDVQEYESLARQIEAIN--LTIDELKELVGQYKGDYLPEADYPWAEDERER 273 (361)
T ss_pred HhchhccC-ceEEEcC--CceEEecCCccccHHHHHHHhhhhhccc--cCHHHHHHHHHHhcCCcCCccccccccchHHH
Confidence 1 0000 0000000 0000 00 02223333333333221 2333333333333 111222222222111
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC
Q 004006 427 MEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS-----SG 501 (779)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~ 501 (779)
+... -..+++.....|..+|.+.+|..+..+.+... +.+...+-.|+..+...|+--.+.+-++.+.+ .|
T Consensus 274 le~l----y~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelg 348 (361)
T COG3947 274 LEQL----YMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELG 348 (361)
T ss_pred HHHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhC
Confidence 1111 01223445567788888888888888777653 23666777788888888886666666555532 35
Q ss_pred CCCCHHHH
Q 004006 502 IKHNMKTY 509 (779)
Q Consensus 502 ~~~~~~~~ 509 (779)
+..+...+
T Consensus 349 i~vddsie 356 (361)
T COG3947 349 IDVDDSIE 356 (361)
T ss_pred CCcchhHH
Confidence 55554433
No 449
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.70 E-value=16 Score=36.65 Aligned_cols=150 Identities=19% Similarity=0.140 Sum_probs=83.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----c
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG----RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----M 379 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~ 379 (779)
..+++..+...+......+ +......+...|... .+..+|.++|+.+.+.| .......|..+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4556777777777776643 224444444444432 45777888888777765 34455556666665 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-------NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI---- 448 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 448 (779)
.+..+|..+|+++.+.|...-..+...+...|..-. +...|...|.++...+ +......+..+|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 477888888888888764422222444444443321 2235666666666554 33333334433322
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 004006 449 IGNEEKCLIVFERLKECG 466 (779)
Q Consensus 449 ~g~~~~a~~~~~~~~~~g 466 (779)
..+.++|..+|.+..+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 235566666666665554
No 450
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.60 E-value=7.2 Score=35.24 Aligned_cols=143 Identities=13% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHH
Q 004006 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEAL--LKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 630 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 707 (779)
.+++|+.-......--...|..++.......- +.....+++....-+...-++..| ...+..+|++++|..-++..
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~--~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~ 115 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP--KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q ss_pred HhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 708 SAQKIPRNTFVY--NILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 708 ~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
...-..-+.... -.|..+....|.+++|+.+++...+.++ .......-++++...|+.++|+.-|+.
T Consensus 116 l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~k 184 (207)
T COG2976 116 LAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEK 184 (207)
T ss_pred HccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHH
No 451
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=3.3 Score=45.59 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=3.6
Q ss_pred EEEeCCH
Q 004006 198 FVIYDGP 204 (779)
Q Consensus 198 fv~f~~~ 204 (779)
||+|.+.
T Consensus 231 FV~fid~ 237 (887)
T KOG1985|consen 231 FVEFIDQ 237 (887)
T ss_pred eEEecCC
Confidence 5666433
No 452
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.56 E-value=1.4 Score=42.95 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=46.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
+.|.+.|++++|+.+|.+.....+. |.+++..-..+|.+...|..|+.-....+..+ ..-+-.|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 3466666666666666665554322 66666666666666666666655555554432 111223333333334445555
Q ss_pred HHHHHHHHHHH
Q 004006 454 KCLIVFERLKE 464 (779)
Q Consensus 454 ~a~~~~~~~~~ 464 (779)
+|.+-++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555555544
No 453
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.51 E-value=0.47 Score=29.63 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 718 VYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
+|..|..+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888854
No 454
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.33 E-value=1.2 Score=43.46 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=63.5
Q ss_pred HHHHHhhhc-ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004006 239 KAEVRARWV-AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ 317 (779)
Q Consensus 239 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (779)
....+.+.. |.|.|.+ ++|+++|.+.+..+|. ++..|..-..+|.+..+|..|..
T Consensus 97 ~SEiKE~GN~yFKQgKy---------~EAIDCYs~~ia~~P~---------------NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKY---------EEAIDCYSTAIAVYPH---------------NPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hHHHHHhhhhhhhccch---------hHHHHHhhhhhccCCC---------------CccchhhHHHHHHHHHHHHHHHH
Confidence 334444444 8888888 8888888888887775 55666666777888888877777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 318 TFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
-++.++..+ ..-...|..-..+-...|...+|.+-++..++.
T Consensus 153 DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 153 DCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 777776653 112234555555555556666776666666664
No 455
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.31 E-value=20 Score=37.06 Aligned_cols=256 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 004006 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG----LKPDVVLYNNIIRAF 551 (779)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l~~~~ 551 (779)
..+.+.-+.|+++...++......... +...+..+... ..++++++....+.+...- .......|......+
T Consensus 3 ~~~eaaWrl~~Wd~l~~~~~~~~~~~~--~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 3 LAAEAAWRLGDWDLLEEYLSQSNEDSP--EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHHhcCChhhHHHHHhhccCCCh--hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 552 CGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAI 631 (779)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 631 (779)
.+...+.+..++.+-....... ..+.....+.++.-...- .++..+|..++..-.-.-..-
T Consensus 79 ~~lq~L~Elee~~~~~~~~~~~---------------~~~~~~l~~~W~~Rl~~~-~~~~~~~~~il~~R~~~l~~~--- 139 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLSQN---------------PQDLKSLLKRWRSRLPNM-QDDFSVWEPILSLRRLVLSLI--- 139 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhccc---------------HHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHhcc---
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 632 EILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL---DVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 632 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
........+|..++..+.+.|.++.|...+.++...+... ...+...-++.+...|+-.+|...++...
T Consensus 140 --------~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 140 --------LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred --------cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q ss_pred hCCCCCC---------------------------------HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCC
Q 004006 709 AQKIPRN---------------------------------TFVYNILIDGWARR------GDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 709 ~~~~~~~---------------------------------~~~~~~l~~~~~~~------g~~~~A~~~~~~m~~~g~~p 749 (779)
...+..+ ...+..+..-+... +..+++.+.|+++.+. ..-
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~ 290 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-DPS 290 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh-Chh
Q ss_pred CHHHHHHHHHHHHh
Q 004006 750 DVHTYTSFINACKC 763 (779)
Q Consensus 750 d~~~~~~l~~a~~~ 763 (779)
....|..+...|.+
T Consensus 291 ~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 291 WEKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHHH
No 456
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.29 E-value=2.4 Score=38.11 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=72.7
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
+.+.|++ +.|...|..+++.-|.....+.+ ..|..-..++.+.+.++.|+.-+.+.++.+.
T Consensus 105 ~F~ngdy---------eeA~skY~~Ale~cp~~~~e~rs----------Ily~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 105 LFKNGDY---------EEANSKYQEALESCPSTSTEERS----------ILYSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred hhhcccH---------HHHHHHHHHHHHhCccccHHHHH----------HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 4567888 99999999999887754333222 2355556788899999999999999999863
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 361 (779)
. .......-..+|.+...+++|++-|.++++..
T Consensus 166 t-y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 166 T-YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred h-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 2 44455566778999999999999999999864
No 457
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.28 E-value=1.7 Score=38.56 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHCCCC
Q 004006 260 HKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD-----------MHRARQTFENMRARGIE 328 (779)
Q Consensus 260 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~~~~~~~~ 328 (779)
+.-.++|+..|.+++.++|. ....+..+.++|...+. |++|...|+++... .
T Consensus 48 ~~miedAisK~eeAL~I~P~---------------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~ 110 (186)
T PF06552_consen 48 KKMIEDAISKFEEALKINPN---------------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--D 110 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcCCc---------------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--C
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 004006 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI 362 (779)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 362 (779)
|+..+|+.-+....+ |-+++.++.+.+.
T Consensus 111 P~ne~Y~ksLe~~~k------ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 111 PNNELYRKSLEMAAK------APELHMEIHKQGL 138 (186)
T ss_dssp TT-HHHHHHHHHHHT------HHHHHHHHHHSSS
T ss_pred CCcHHHHHHHHHHHh------hHHHHHHHHHHHh
No 458
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.17 E-value=1.4 Score=35.87 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=48.7
Q ss_pred eEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
.+-+...|..++.++|..+.+.+- .|..++|++| ...++--+.+.|.+..+|..=...+ ||+.++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird---~~pnrymVLikF~~~~~Ad~Fy~~f--NGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD---GTPNRYMVLIKFRDQESADEFYEEF--NGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC---CCCceEEEEEEECCHHHHHHHHHHh--CCCccCC
Confidence 444455556666677776666664 5778999987 2225678899999999999999988 9999863
No 459
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.07 E-value=21 Score=36.94 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 300 GLMVNYYARRGDMHRARQ-TFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
..-|.--...|+...|-+ ++.-+....-.|+.....+.| ....|+|+.+...+...... +.-...+...+++...+
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc
Confidence 333445556788776655 444444443345555544444 45669999999888665442 33356678888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
.|++++|...-+-|....++ +...........-..|-++++...|+++...+
T Consensus 370 l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999988888876655 44444333344456678899999999888765
No 460
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=2.1 Score=45.25 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=86.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
..|+++.|..++..+. ....+.+++.+.++|-.++|+++- +|.. .-.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHH
Confidence 3455555555443332 223455666666677666665541 1211 12244556777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004006 493 VSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH 572 (779)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 572 (779)
+..+.. +..-|..|.++..+.+++..|.+.|.+... |..|+-++...|+-+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 665432 556677777777777777777777766532 45566666666766655555555555543
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMM 602 (779)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 602 (779)
. +....+|...|+++++.+++..-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 3 23333566677777777666543
No 461
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.81 E-value=0.7 Score=38.53 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=51.0
Q ss_pred eEEeccCCCcCCh----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 153 KIFVGNLPNWIKK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 153 ~~~v~~l~~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+|.|.=|..++.. ..+....+.||+|.+|... | +.-|.|.|.+..+|=+|+.++ +...-|..+.+
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------G--rqsavVvF~d~~SAC~Av~Af---~s~~pgtm~qC 156 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------G--RQSAVVVFKDITSACKAVSAF---QSRAPGTMFQC 156 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------C--CceEEEEehhhHHHHHHHHhh---cCCCCCceEEe
Confidence 7777755544433 3445667889999999765 3 457999999999999999997 45667788888
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 774
No 462
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.76 E-value=3.1 Score=40.43 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN-----EGLELDVFTYEA 686 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 686 (779)
.++..++..+...++++.+...+++++... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455566666667777777777777776654 45666677777777777777777777766654 355665555544
Q ss_pred HHHH
Q 004006 687 LLKA 690 (779)
Q Consensus 687 l~~~ 690 (779)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 463
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=3.5 Score=43.69 Aligned_cols=150 Identities=17% Similarity=0.109 Sum_probs=92.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
-.|+++.|..++..+. ....+.+++.+.++|..++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 4566666665544443 234556777777777777776542 22221 1223346677777776
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
+..+.. +..-|..|..+..+.+++..|.++|.+... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 655432 556688888888888888888888777654 34566677777777665555555555543
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
. | ....+|...|+++++.+++..-
T Consensus 724 ~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 2 2 2234566778888888877544
No 464
>PF15449 Retinal: Retinal protein
Probab=90.66 E-value=8.6 Score=43.79 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=5.2
Q ss_pred ccccceEEec
Q 004006 148 FRQEGKIFVG 157 (779)
Q Consensus 148 ~~~~~~~~v~ 157 (779)
..+.+.||.-
T Consensus 1139 ~~Nt~SIFCP 1148 (1287)
T PF15449_consen 1139 SGNTCSIFCP 1148 (1287)
T ss_pred cCCccceecc
Confidence 3445566654
No 465
>PRK09687 putative lyase; Provisional
Probab=90.64 E-value=19 Score=35.66 Aligned_cols=138 Identities=16% Similarity=0.108 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004006 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG-DTGKAFEYFTKLRNEGLELDVFTYEALL 688 (779)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 688 (779)
+..+-...+.++.+.++ .+++..+-.+.+. +|...-...+.++.+.+ +...+...+..++. ..+..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 45555566667766665 5666666666642 34444444444555443 23456666666663 34666667777
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+..+.+. .+|..+....+.+|.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 78888777 45555555555532 2 234677788888885 688888888763 3577777777777753
No 466
>PRK09687 putative lyase; Provisional
Probab=90.41 E-value=20 Score=35.52 Aligned_cols=82 Identities=5% Similarity=-0.086 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh----HHHHHHHHHHHHcCCCCCHhH
Q 004006 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM----EEALSCVRKMKEEGIEMSLVT 368 (779)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~ 368 (779)
.++.......+..+...|. .++...+..+... .|...-...+.++...|+. .++..++..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3455555556666666664 3444444444432 2555555666666666653 4566666655332 245555
Q ss_pred HHHHHHHHHccC
Q 004006 369 YSIIVGGFAKMG 380 (779)
Q Consensus 369 ~~~l~~~~~~~g 380 (779)
....+.++...+
T Consensus 108 R~~A~~aLG~~~ 119 (280)
T PRK09687 108 RASAINATGHRC 119 (280)
T ss_pred HHHHHHHHhccc
Confidence 555555555443
No 467
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.34 E-value=13 Score=41.42 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENM 322 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (779)
+.-|. .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56676 688888899999999998544
No 468
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.34 E-value=24 Score=36.40 Aligned_cols=158 Identities=9% Similarity=0.081 Sum_probs=85.2
Q ss_pred hhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004006 259 WHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLI 338 (779)
Q Consensus 259 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 338 (779)
|...+..+...|..++..- +-+.++....+.+- ...++--+...+.+.|+...|-+++++++-. -..++....
T Consensus 6 hs~~Y~~~q~~F~~~v~~~--Dp~~l~~ll~~~Py-HidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F 78 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSH--DPNALINLLQKNPY-HIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSF 78 (360)
T ss_pred CCHHHHHHHHHHHHHHHcc--CHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 4455678888888887642 23455544433222 4556666778899999999999999887632 001111111
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hc
Q 004006 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI---IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC-QT 414 (779)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 414 (779)
..+.....-..+ ++.-. ..-|-..|.. -+..+.+.|.+..|+++.+.+...++.-|......+|..|+ +.
T Consensus 79 ~~~~~~~~~g~~-----rL~~~-~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs 152 (360)
T PF04910_consen 79 SPFRSNLTSGNC-----RLDYR-RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS 152 (360)
T ss_pred hhhhcccccCcc-----ccCCc-cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc
Confidence 110000000000 00000 0112222222 23445667777777777777777766656666666666654 56
Q ss_pred CChHHHHHHHHHHHH
Q 004006 415 RNMERAEALVRDMEE 429 (779)
Q Consensus 415 g~~~~A~~~~~~~~~ 429 (779)
++++.-+++++....
T Consensus 153 ~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 153 RQYQWLIDFSESPLA 167 (360)
T ss_pred CCHHHHHHHHHhHhh
Confidence 666666666665544
No 469
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=90.34 E-value=2.5 Score=45.51 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 12 FPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLS 91 (779)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~ 91 (779)
+.......++-..|++.+........|...-.|-|...+.......++|+....-....+.+.+++.+......+....+
T Consensus 942 ~g~~~~~~~~r~~~~~~~~~~~~~~~paA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~ 1021 (1106)
T KOG0162|consen 942 SGRDAASTPTRRAPQNKQAYGQNGVSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQPSARPSSKPTVFTKVPDAGAS 1021 (1106)
T ss_pred CCcccccCCCCCCCCCcccccCCCCCccccCCCCCCCCCCCccccCCCCCCcccccccccccCCCCCCccccccCcccCc
Q ss_pred ccccCCCCCCCCCCC---CCCCCCCCCCCCC
Q 004006 92 AKLRLSSKLSPPPPP---PPPPPPAEQLQEP 119 (779)
Q Consensus 92 ~~~~~~~~~~~~ppp---~~~~~p~~~~~~~ 119 (779)
.....+..+.-+||+ |+||||...+-.|
T Consensus 1022 ~~~~~~s~~q~~pP~~g~P~PpPp~~~~k~p 1052 (1106)
T KOG0162|consen 1022 GNGRKPSGPQRPPPPAGRPKPPPPAKPPKNP 1052 (1106)
T ss_pred ccccCCCCCCCCCCCCCCCCccCCCCCCCCc
No 470
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.34 E-value=22 Score=36.14 Aligned_cols=81 Identities=7% Similarity=-0.070 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---cCCHHHHHHH
Q 004006 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK---MGNAEAADHW 388 (779)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 388 (779)
.+.-+.+++++++.+. -+...+..+++.+.+..+.++..+.+++++..... +...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3566788899888753 46777888889999888999999999999887432 67778777766543 2346677777
Q ss_pred HHHHHH
Q 004006 389 FEEAKE 394 (779)
Q Consensus 389 ~~~~~~ 394 (779)
|.+...
T Consensus 125 y~~~l~ 130 (321)
T PF08424_consen 125 YEKCLR 130 (321)
T ss_pred HHHHHH
Confidence 766654
No 471
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.27 E-value=5.9 Score=40.90 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=60.2
Q ss_pred HHhcCCHHHHHHHHHHHH---HCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC-----
Q 004006 586 FARAGEMKRALEIFDMMR---RSGCIP-----TVHTFNALILGLVEKRQMEKAIEILDEMTL-------AGISPN----- 645 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~---~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------~~~~~~----- 645 (779)
+.-.|++.+|.+++...- ..|... .-..||.|...+.+.+.+.-+..+|.+.+. .|+++.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 444566666666554331 112111 122346666666666666666666555442 233221
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 004006 646 ------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694 (779)
Q Consensus 646 ------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (779)
..+||.=+ .|...|+.-.|.+.|.+.... +.-+...|..|..+|...
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23444333 566778888888888887765 456777888888887643
No 472
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.19 E-value=12 Score=32.80 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (779)
......++..-.+.++.+++..+++.+.-..+. ....-..-+..+...|++.+|+++|+++.+. .+....-..|+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~ 86 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 446 YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
|.....-..=..+-+++.+.+..++.. .++..+....+...|..
T Consensus 87 CL~~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 87 CLYALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
No 473
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.09 E-value=16 Score=34.06 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004006 519 LKDWANVFAVFEDVMRD 535 (779)
Q Consensus 519 ~~~~~~a~~~~~~~~~~ 535 (779)
.+++.+|+.+|+++.+.
T Consensus 167 leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 474
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.95 E-value=1.7 Score=30.99 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=42.0
Q ss_pred ceEEeccCCCcCChHHHHHHHhcc---CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQF---GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
.+|+|.|+.. .+.++++.+|..| .....|..+-| .-+=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD--------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD--------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC--------CcEEEEECCHHHHHHHHHcC
Confidence 3899999854 6788999999988 13457888877 23458899999999998764
No 475
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.91 E-value=6.1 Score=40.83 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 718 VYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
+||+ +-.|...|+...|.+.|.+.... +.-+...|-.|..+|.+.
T Consensus 338 lYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 338 LYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 4454 45778889999999999888875 677888999999998875
No 476
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.83 E-value=0.52 Score=47.69 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=58.2
Q ss_pred ceEEeccCCCcC-ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPNWI-KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+.|-+--.++.. +..+|...|.+||.|..|.+--. ---|.|+|.+..+|..|... .|..|++|.|+|-|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-------~~~a~vTF~t~aeag~a~~s---~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-------SLHAVVTFKTRAEAGEAYAS---HGAVLNNRFIKLFW 442 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-------hhhheeeeeccccccchhcc---ccceecCceeEEEE
Confidence 344444445544 44799999999999999876321 45789999999999766543 89999999999999
Q ss_pred cCCcchhhH
Q 004006 231 DDGRRLKNK 239 (779)
Q Consensus 231 ~~~~~~~~~ 239 (779)
-++..+.+.
T Consensus 443 hnps~~tn~ 451 (526)
T KOG2135|consen 443 HNPSPVTNI 451 (526)
T ss_pred ecCCcccCc
Confidence 877654443
No 477
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.63 E-value=26 Score=35.65 Aligned_cols=60 Identities=7% Similarity=0.006 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (779)
.-+.+++++++.++ -+...+..++..+.+..+.++..+.++++.... +.+...|...++.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 34445555555433 245555555555555555555555555555542 2244444444433
No 478
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.50 E-value=0.94 Score=27.64 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 717 FVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 717 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|..++.+|...|++++|++.++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3456666666666666666666666665
No 479
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.39 E-value=3.8 Score=36.49 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKS----------GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
++.|.+.++.....+ +.|...++.-..++... ..+++|..-|++.+..+ +.....+.+++.+|...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHh
Q ss_pred -----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 732 -----------VWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 732 -----------~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
+++|.+.|++..+ .+|+..+|+.-+..+.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHTH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhh
No 480
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=89.22 E-value=7.4 Score=42.17 Aligned_cols=127 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 2 DNILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTH 81 (779)
Q Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~ 81 (779)
+|...+|-|.-.-+.-+..-.+.-.....++-..+++++.-.-....|+...+|.+.+.|.......|++........+.
T Consensus 921 ~GlP~~Skps~k~p~~~tg~s~g~~~~~~~~r~~~~~~~~~~~~~~~paA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~ 1000 (1106)
T KOG0162|consen 921 TGLPPNSKPSRKKPRKATGYSSGRDAASTPTRRAPQNKQAYGQNGVSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQ 1000 (1106)
T ss_pred CCCCCCCCcCCcCcccCCCCCCCcccccCCCCCCCCCcccccCCCCCccccCCCCCCCCCCCccccCCCCCCcccccccc
Q ss_pred CCCCCCCCCCc-----cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 82 VPSPPSHSLSA-----KLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIP 128 (779)
Q Consensus 82 ~~~p~~~~~~~-----~~~~~~~~~~~ppp~~~~~p~~~~~~~~~~~~~~~~ 128 (779)
+..-|.+.+.. ....++....+..++.+||+...+++|+....+..+
T Consensus 1001 ~~~~p~s~p~~~~~~~~~~~~~~~~~~s~~q~~pP~~g~P~PpPp~~~~k~p 1052 (1106)
T KOG0162|consen 1001 PSARPSSKPTVFTKVPDAGASGNGRKPSGPQRPPPPAGRPKPPPPAKPPKNP 1052 (1106)
T ss_pred cccCCCCCCccccccCcccCcccccCCCCCCCCCCCCCCCCccCCCCCCCCc
No 481
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.00 E-value=0.81 Score=45.03 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCC--cceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN--VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~--~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.|-|.||.+.+|.+.++.+|.-.|.|.++++.....+..-. .-.|||.|.+...+..|-..- |-..++--.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt--ntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT--NTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc--cceeeeeeEEEE
Q ss_pred EecCC
Q 004006 229 KLDDG 233 (779)
Q Consensus 229 ~~~~~ 233 (779)
-+...
T Consensus 85 p~~~~ 89 (479)
T KOG4676|consen 85 PYGDE 89 (479)
T ss_pred ecCCC
No 482
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.77 E-value=16 Score=32.13 Aligned_cols=118 Identities=13% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004006 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (779)
Q Consensus 649 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (779)
...++..-...++.+.+..++.-+.-.. +-....-..-...+...|+|.+|+.+|+++.+.. +....-..|+-.|..
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 004006 729 RGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGR 772 (779)
Q Consensus 729 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~ 772 (779)
..+-.+=..+-+++.+.+-.|+. ..|+.++....+...|.+
T Consensus 90 ~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
No 483
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.73 E-value=21 Score=33.41 Aligned_cols=234 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHH----HHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKM----KEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (779)
...|....+.|--..++..|=..|.+. .+.|-..|..+...-+.-+.+.++.++|.+.+++.++
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aie------------ 101 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIE------------ 101 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHH------------
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
+|...|++..|-....++-+. .+.+..-+..-|..|.+.+++-+..+.-...-+ .+..........++
T Consensus 102 ---Iyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK--------C~lKvA~yaa~leq 169 (288)
T KOG1586|consen 102 ---IYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANK--------CLLKVAQYAAQLEQ 169 (288)
T ss_pred ---HHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH--------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004006 487 VSKALEVSKVMKSSGIKHNMKTYSM------LINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRA 560 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 560 (779)
+.+|+++|+++....+.-+..-|.. ..-.+.-..+.-.+...+++..+..+.....-=..++.-+...-+-+..
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~ 249 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDI 249 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhH
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 004006 561 IHIVKEMQKERHRPTSRTFMPIIHGFAR 588 (779)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (779)
..+-+....-+-......|.+-|-.-.+
T Consensus 250 e~fte~vkefDsisrLD~W~ttiLlkiK 277 (288)
T KOG1586|consen 250 EKFTEVVKEFDSISRLDQWKTTILLKIK 277 (288)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHH
No 484
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=88.70 E-value=1.9 Score=42.17 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 14 HTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSP 85 (779)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p 85 (779)
+.++++... ..+|....+...+..+.+|++...+++...+|.+.+|++|+.++++++.+..+...++.++|
T Consensus 148 ~gaApa~~~-~~apa~~~pk~~~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~P~~~~a~k~~v~~~~~~p 218 (457)
T KOG0559|consen 148 PGAAPAKGG-ASAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPVAESPPAPSSPEPVPASAKKPSVAQPKPPP 218 (457)
T ss_pred CCCCCcccc-ccCCCccCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCccccCccccCCCCCc
No 485
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=7 Score=43.22 Aligned_cols=124 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 10 PHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHS 89 (779)
Q Consensus 10 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~ 89 (779)
.|+-.+++...+....++++.+..++...+-+|++..+..+..+++-++..+.-......+..+..+.+-+....|+|.+
T Consensus 20 ~~~~~~p~~~~~~~g~~~p~~~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Sy~~~~~p~p~~ 99 (887)
T KOG1985|consen 20 QPALFPPASLTPQNGMPPPPSASMPPPAGSVPPASVTPAQPQIQQQIPPATPSMEGNLQLPNAPVGPPSYQQLQAPTPAQ 99 (887)
T ss_pred CcccCCCccCCccCCCCCCCcCCCCCCCCCCCCCCcCccccccCCCCCCcccccCcCCCCCCCCCCCcchhhccCCCCcc
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 90 LSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENR 133 (779)
Q Consensus 90 ~~~~~~~~~~~~~~ppp~~~~~p~~~~~~~~~~~~~~~~~~~~~ 133 (779)
..+.....++..++++..+++.+++.....+.......++....
T Consensus 100 ~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~~~ 143 (887)
T KOG1985|consen 100 QQQQPPPPPQVGSQPPQMGPPAPPPMNALQPVDLPNQLPPGINQ 143 (887)
T ss_pred cCCCCCCCCccCCCCCCCCCCCCCcccccCccccccCCCCCccc
No 486
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.56 E-value=19 Score=32.72 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIM--HGYASLGDTGKAFEYFTKLRNE--GLELDVFTYEA 686 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ 686 (779)
...|..++......+- +.....+++...+-....-.+..|- ..+...+++++|...++..+.. .-.....+-..
T Consensus 54 S~~Y~~~i~~~~ak~~--~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQAKKP--KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHhcCCc--hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSF 757 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 757 (779)
|.......|.+++|+..++...+.+ -.......-++++...|+-++|..-|++.++.+-.+...-+.-+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqm 200 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQM 200 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHHh
No 487
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.48 E-value=1.2 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 716 TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (779)
Q Consensus 716 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (779)
...|..++.+|...|++++|++.+++.++ +.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
No 488
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=24 Score=33.89 Aligned_cols=295 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYH-------MMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLIN 479 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 479 (779)
+.+-..+.+++++|+..+.++...|+..+..+.+ .+...|...|++...-+......+.-..-...--..++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 004006 480 LYTKI-----GKVSKALEVSKVMKSSGIKHNMKTYSM-----LINGFLKLKDWANVFAVFEDVMRD----GLKPDVVLYN 545 (779)
Q Consensus 480 ~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~ 545 (779)
.+... ..++.-+.+.....+...+-+...... ++.++.+.|.+.+|+.+...+... +-+++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHHH-HHHhCCCHHHHHHHHHHHHHcC----CCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 546 NIIR-AFCGMGNMDRAIHIVKEMQKER----HRPTSRTFMPIIHG--FARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (779)
Q Consensus 546 ~l~~-~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 618 (779)
.+=. +|....+..++..-+...+... ..|-...-.-|+.+ .|...++..|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E-------------- 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE-------------- 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--------------
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--C
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG--R 696 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 696 (779)
+|.....-.+|...++.|+-.. .|++.-...+..-.+...++.....++. ....+..+|.... +
T Consensus 235 -gft~l~~d~kAc~sLkYmlLSk---------IMlN~~~evk~vl~~K~t~~~y~~r~I~----am~avaea~~NRsL~d 300 (421)
T COG5159 235 -GFTLLKMDVKACVSLKYMLLSK---------IMLNRREEVKAVLRNKNTLKHYDDRMIR----AMLAVAEAFGNRSLKD 300 (421)
T ss_pred -ccccccchHHHHHHHHHHHHHH---------HHHhhHHHHHHHHccchhHhhhhhhhHH----HHHHHHHHhCCCcHhh
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 697 MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 697 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
++.|+.-++.-...+ +.-..+++.|-+.+...+
T Consensus 301 f~~aL~qY~~el~~D-~~iRsHl~~LYD~LLe~N 333 (421)
T COG5159 301 FSDALAQYSDELHQD-SFIRSHLQYLYDVLLEKN 333 (421)
T ss_pred HHHHHHHhhHHhccC-HHHHHHHHHHHHHHHHhh
No 489
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.44 E-value=1.2 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
..+|..++.+|...|++++|+..|+++++..+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
No 490
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.13 E-value=36 Score=35.51 Aligned_cols=433 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhh-----HHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCHhHH
Q 004006 302 MVNYYARRG--DMHRARQTFENMRARGIEPTLHV-----YTNLIHAYAVG-----RDMEEALSCVRKMKEEGIEMSLVTY 369 (779)
Q Consensus 302 li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~ 369 (779)
+...+-..| +...++++++-.....+.--+.+ ...++-.|.++ ...+.|+.+.+.|... .+.-..++
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f-ydvKf~a~ 91 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF-YDVKFQAA 91 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH-HhhhhHHH
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 370 SIIVGGFAKMG-NAEAADHWFEEAKERH---ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (779)
Q Consensus 370 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (779)
+.|..+|+... .+..|..++.+.++.. +.........|+..+.-..++.-|.+++.--.+.- .+-...|..++..
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ft 170 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRMLFT 170 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHHHH
Q ss_pred HHh---------cCCHHHHHHHHHHHHHCCCCCC--------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--
Q 004006 446 YTI---------IGNEEKCLIVFERLKECGFSPS--------IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM-- 506 (779)
Q Consensus 446 ~~~---------~g~~~~a~~~~~~~~~~g~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 506 (779)
+.. ..+.+++......+.+. ..+| ++..+.-+..|.-.|+...+...++++...--.-..
T Consensus 171 ls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 171 LSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Q ss_pred -------------------------------HHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCC----------HHH
Q 004006 507 -------------------------------KTYSMLINGFLKL--KDWANVFAVFEDVMRDGLKPD----------VVL 543 (779)
Q Consensus 507 -------------------------------~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~----------~~~ 543 (779)
.....+..+|.+. +-.|+++...++..+. | ..+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~----d~~srilsm~km~~ 325 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQA----DLMSRILSMFKMIL 325 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccc----cchhHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc---------ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS---------RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (779)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 614 (779)
...++.+-.-.|++.+|++-+.+|.+.-..... .....+..-+...+.++.|+.-|....+.--..|...+
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCH
Q 004006 615 --NALILGLVEKRQMEKAIEILDEMTLAGISPNE------HTYTTIMHGYASLGDTGKAFEYFTKLRNE-----GLELDV 681 (779)
Q Consensus 615 --~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~ 681 (779)
..+...|.+.++.+.-.++++.+--.+..+.. ..+-.-.--....+++.+|..++.+.++. -.....
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 004006 682 FTYEALLKACCKSGRMQSALAVTKEMSAQ-----KIPRNTFVYNILIDGWARRGD--VWEAADLMQQ 741 (779)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 741 (779)
-.+..|...+...|+-.++..+..-.... +++.-.+....+-+.|...|+ .++..+.+..
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
No 491
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.00 E-value=6.3 Score=38.28 Aligned_cols=142 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHH----------HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCC
Q 004006 511 MLINGFLKLKDWANVFAVF----------EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER-----HRPT 575 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~----------~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~ 575 (779)
.|..+|.....|+.-.... +.-...|......+...++..-....+.+.++.++-+++... ...+
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~ 103 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT 103 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (779)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 655 (779)
..+|..++.-| +..+++.++..-+..|+-+|.++++.+|+.+.+.+++.+|..+.-.|+....-.|..+-..-+..
T Consensus 104 ~~~~irlllky----~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~nell~~L~Lyv 179 (418)
T KOG4570|consen 104 IHTWIRLLLKY----DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENELLQLLSLYV 179 (418)
T ss_pred HHHHHHHHHcc----ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred H
Q 004006 656 Y 656 (779)
Q Consensus 656 ~ 656 (779)
|
T Consensus 180 ~ 180 (418)
T KOG4570|consen 180 L 180 (418)
T ss_pred H
No 492
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.78 E-value=20 Score=32.01 Aligned_cols=136 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
++.+..+.+.++.++...+..+++.+.+.|+ ...+.++.+.++-+|.......+ +...+.+..+.++=-+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~----~~~L~qllq~~Vi~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLk- 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQ----FSQLHQLLQYHVIPDSKPLACQL--LSLGNQYPPAYQLGLDMLK- 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHhhcccCCcHHHHHHH--HHhHccChHHHHHHHHHHH-
Q ss_pred CCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 536 GLKPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606 (779)
Q Consensus 536 g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 606 (779)
... .+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+|+-..+.+
T Consensus 87 ----RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 ----RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
No 493
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.76 E-value=30 Score=34.10 Aligned_cols=181 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 004006 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALV 424 (779)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (779)
++.+....+++.+++.+..| +-..+|..+.++--...++.|.+. +..++++-.+..
T Consensus 36 ~~~~~~e~l~~~Ird~~Map-------~Ye~lce~~~i~~D~~~l~~m~~~-----------------neeki~eld~~i 91 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP-------LYEYLCESLVIKLDQDLLNSMKKA-----------------NEEKIKELDEKI 91 (393)
T ss_pred cCHHHHHHHHHHHHhcccch-------HHHHHHhhcceeccHHHHHHHHHh-----------------hHHHHHHHHHHH
Q ss_pred HHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 004006 425 RDMEEE-GIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSPSIISYGC-LINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 425 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 498 (779)
++..+. |-.--..++.....-|++.|+.+.|++.+.+..+. |.+.|+..+.. |.-.|....-..+-++..+.+.
T Consensus 92 edaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li 171 (393)
T KOG0687|consen 92 EDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI 171 (393)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 499 SSGIKHNMKTYSMLINGFLKL--KDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 499 ~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
+.|...+-.---..-.+.... .++.+|-.+|-+.+..-..-....|..++.
T Consensus 172 E~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 172 EEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
No 494
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=87.56 E-value=2.1 Score=39.70 Aligned_cols=162 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q 004006 64 SKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQ 143 (779)
Q Consensus 64 ~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (779)
+.-+.+|.+...-......+-++..+..+..+....+..+-.-++++.................................
T Consensus 13 ~el~~pp~~n~~~p~~~ra~~~~~~s~~~l~~~~~~~~s~~~v~~~~~~~~~~~~~~~v~tav~~~s~~a~~~~Pt~l~~ 92 (290)
T KOG0226|consen 13 PELPGPPGPNMMLPPMARAPGPPLGSMAALRPPLEEPASPREVPPPSGLGLPEFESSRVKTAVGRKSAPAVWADPTLLAP 92 (290)
T ss_pred ccCCCCCCCCccCCccccCCCCccccccccCCcccCCCCccccCCCCCCCCCcchhhhhhhhccccccccccCCCccCCC
Q ss_pred hhhhccccceEEeccCCCcCChHH-H--HHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 144 EETEFRQEGKIFVGNLPNWIKKHL-V--MEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 144 ~~~~~~~~~~~~v~~l~~~~~~~~-l--~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
....+ .+|++++...+..+- | ...|+-+-.....+++++ ..+.-++++|+.|.......++-..- +++.
T Consensus 93 ~P~vf----~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~--~~Kk 164 (290)
T KOG0226|consen 93 APAVF----RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEK--EKKK 164 (290)
T ss_pred Ccccc----cccccccccccCCCCCCcchhhhccchhhhhhhhhhc--CCCccCcccccCcchhhhhhhhcccc--cccc
Q ss_pred eeceEEEEEecCC
Q 004006 221 FHGRVLTVKLDDG 233 (779)
Q Consensus 221 ~~~~~~~v~~~~~ 233 (779)
++.++|+..-...
T Consensus 165 i~~~~VR~a~gts 177 (290)
T KOG0226|consen 165 IGKPPVRLAAGTS 177 (290)
T ss_pred ccCcceeeccccc
No 495
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.35 E-value=1.5 Score=26.57 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPT 330 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (779)
+..|..+...|...|++++|++.|++.++. .|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
No 496
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=87.02 E-value=4.4 Score=46.61 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred cCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 4 ILSLSAPHFP------HTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNS 77 (779)
Q Consensus 4 ~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 77 (779)
+..+++|-+| +..|++.+-+-..|.-......+..++.+.=-...+.+.+.++++.+.+.+.|..|++++.+..
T Consensus 1835 ~p~s~ap~pplr~~~a~~~p~a~~rq~~vP~~~~r~~s~a~~~~~t~~~k~q~~~p~m~Ppq~~~~pqp~gpqPp~~p~p 1914 (1958)
T KOG0391|consen 1835 KPISPAPFPPLRQQQAQQQPTATTRQVQVPQIQGRAQSPAGKLTPTHLIKMQKQKPQMPPPQPAAQPQPQGPQPPQQPSP 1914 (1958)
T ss_pred CCCCCCCCCcccccccccCCCccccccccCcccccCcCCCCCCCHHHHHhhcCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 78 ATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQ 120 (779)
Q Consensus 78 ~~~~~~~p~~~~~~~~~~~~~~~~~~ppp~~~~~p~~~~~~~~ 120 (779)
.-.+...++.......-...-+.+.-+.+|+++++++.+.+++
T Consensus 1915 ~l~~v~~~rrg~lg~~rs~gd~~se~~sqpqp~p~~~~p~pp~ 1957 (1958)
T KOG0391|consen 1915 QLTTVTAPRRGALGVARSTGDPTSELQSQPQPQPQAPQPAPPP 1957 (1958)
T ss_pred CCCccccCCCCCccceeccCCCCccccCCCCCCCCCCCCCCCC
No 497
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=86.82 E-value=4.8 Score=37.88 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 14 HTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPS 87 (779)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~ 87 (779)
+..+.+.+.+.|..++.....++.++++.+++.|.+++.+.|..+..++++.|..+...+..+..+..++++.+
T Consensus 34 Pa~A~AdPaPtPt~PPtt~~aPP~p~~P~atPaP~appt~~PAdPnA~~Pp~PadPna~~pppadpnap~P~~p 107 (297)
T PF07174_consen 34 PATAQADPAPTPTAPPTTTTAPPAPPPPAATPAPTAPPTPPPADPNAPPPPPPADPNAAPPPPADPNAPPPPAP 107 (297)
T ss_pred cccccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
No 498
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.61 E-value=63 Score=36.65 Aligned_cols=310 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
..|...|+|++|+++-..-.+. -..++..-+..|...+++..|-+++.++.+. +..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~--------FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAETLSS--------FEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------HHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH-------------------HHHHHCCCCCCHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS-------------------KVMKSSGIKHNMKTYSMLIN 514 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-------------------~~m~~~~~~~~~~~~~~ll~ 514 (779)
+++.|-.=+-..+.+...+-..++....-.-.+++--++- +.+.......+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 004006 515 GFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKR 594 (779)
Q Consensus 515 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 594 (779)
.+...|+.+++..+-.-|.. |..++.-+.+.+++++|++++ ......-+.--|+-.--...
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL----------~~~~~~el~yk~ap~Li~~~ 573 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVL----------LNQRNPELFYKYAPELITHS 573 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH----------HhccchhhHHHhhhHHHhcC
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 595 ALEIFDMMRRSGCIPTVHTFNALILGLVEK---RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTK 671 (779)
Q Consensus 595 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 671 (779)
.....+.....+-.........++..+.+. .....+..+++-....-..-+...+|.++..|++..+-+....+-..
T Consensus 574 p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~ 653 (911)
T KOG2034|consen 574 PKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEII 653 (911)
T ss_pred cHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhCCCCCCHH
Q 004006 672 LRNEGLELDVFTYEALLKACCKSG------RMQSALAVTKEMSAQKIPRNTF 717 (779)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~ 717 (779)
....+. ..+-....+..|.+.+ .+..++.++.++++.-+..|..
T Consensus 654 ~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d~d 703 (911)
T KOG2034|consen 654 KFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFDID 703 (911)
T ss_pred hhcccc--ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcCHH
No 499
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.58 E-value=61 Score=36.43 Aligned_cols=361 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH-------HHHHHHHHHHHcCC--CCChhhHHH
Q 004006 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE-------AADHWFEEAKERHA--TLNAIIYGN 406 (779)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~--~~~~~~~~~ 406 (779)
.+|-.|.++|++++|.++..+.... .......+...+..|+...+-. +...-|++...... .|-..+.+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q ss_pred HHHHHHhcCC--------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004006 407 IIYAQCQTRN--------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478 (779)
Q Consensus 407 l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 478 (779)
++..|--..+ .+.-+=+-=.+...+...+... ...-.+++..+.+.+.-+.-+.+ ....-...
T Consensus 195 ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~--------~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~Yf 265 (613)
T PF04097_consen 195 ILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSA--------YERYTLEDLQKLILKYGESHFNA-GSNPLLYF 265 (613)
T ss_dssp HHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSS--------S----HHHHHHHHHHH-GGGCTT-------HH
T ss_pred HHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccc--------cccccHHHHHHHHHHhchhhccc-chhHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMD 558 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 558 (779)
..+.-.|+++.|.+.+-. ......+...+.+.+..|.-.+-.+....-+-.....+..+ .-+..||..|.+.=...
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHcCCCCC----cccHHHHHHHHHhcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHHH---
Q 004006 559 RAIHIVKEMQKERHRPT----SRTFMPIIHGFARAGEMKRALE------------IFDMMRRSGCIPTVHTFNALIL--- 619 (779)
Q Consensus 559 ~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~li~--- 619 (779)
.....++.+.-.....+ .....++-......++++.-+. +-+...-.++..+......++.
T Consensus 342 d~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 342 DPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp -HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-----------HHHHH
Q 004006 620 -GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE--GLELD-----------VFTYE 685 (779)
Q Consensus 620 -~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~-----------~~~~~ 685 (779)
-+...|++++|+.+|.-.. +++++++++.+.+.. ..... ...-.
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~----------------------~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~ 479 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAE----------------------EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAK 479 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-----------------------HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHH
Q ss_pred HHHHHHHHcCCh-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 686 ALLKACCKSGRM-----QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 686 ~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
.++..|...+.. ......+..+.. -.-+..++..|++++|++.++++
T Consensus 480 ~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~----------L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 480 EILERYKSNPHISSKVSRKNRETFQLLLD----------LAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHTTSHHHHTTS-HHHHHHHHHHHH----------HHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHhCcchHhhccHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHhC
No 500
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.36 E-value=1.3 Score=40.01 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhc-cCCe---eEEEEecCCCCCCCC-cceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQ-FGPI---KNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~-~g~i---~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
.+.+|.|.+||+..|++++.+.++. +|.. ..+.-..+....+.+ .+-|+|.|.+.+++..-...+ +|+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~--~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF--DGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC--TTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc--CCcEE
Done!