Query 004006
Match_columns 779
No_of_seqs 730 out of 5455
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 11:11:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-40 4.2E-45 374.4 39.7 471 294-777 82-576 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-39 1E-43 363.0 39.9 476 248-761 94-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4E-28 1.4E-32 256.4 49.2 158 303-464 6-163 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.4E-28 1.8E-32 255.4 49.3 384 337-731 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.4E-28 4.7E-33 263.4 21.8 203 562-764 11-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.6E-27 1.2E-31 252.4 25.5 204 315-518 9-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1E-24 3.5E-29 239.8 40.0 440 296-745 6-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.6E-24 5.5E-29 238.2 36.7 436 331-777 6-475 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.2E-23 7.7E-28 224.8 41.6 386 330-773 25-447 (450)
10 3fp2_A TPR repeat-containing p 99.9 1E-23 3.4E-28 233.3 37.1 434 296-745 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 5.7E-23 2E-27 221.6 39.5 317 265-604 10-357 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.5E-22 5E-27 223.9 37.5 431 331-777 25-488 (537)
13 2xm6_A Protein corresponding t 99.9 1.8E-18 6.3E-23 188.0 50.4 364 315-711 26-433 (490)
14 2xm6_A Protein corresponding t 99.9 4.4E-18 1.5E-22 184.9 51.9 353 294-676 37-433 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 2.6E-19 8.9E-24 186.4 40.5 332 296-658 3-352 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 4.2E-19 1.4E-23 184.8 41.5 343 365-762 2-351 (359)
17 2ooe_A Cleavage stimulation fa 99.9 3.1E-17 1E-21 180.2 46.9 420 295-745 12-492 (530)
18 1xi4_A Clathrin heavy chain; a 99.9 2.4E-16 8.1E-21 177.9 53.8 422 293-776 982-1441(1630)
19 3hym_B Cell division cycle pro 99.8 1.6E-18 5.5E-23 178.1 33.9 269 330-604 21-298 (330)
20 3hym_B Cell division cycle pro 99.8 2E-18 6.7E-23 177.4 34.1 285 435-726 21-314 (330)
21 4fxv_A ELAV-like protein 1; RN 99.8 3.6E-21 1.2E-25 155.4 10.5 83 148-233 16-98 (99)
22 2ooe_A Cleavage stimulation fa 99.8 4E-17 1.4E-21 179.3 45.8 402 280-710 27-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 4E-19 1.4E-23 185.8 25.6 332 273-636 9-355 (368)
24 1fch_A Peroxisomal targeting s 99.8 1.7E-18 5.9E-23 180.9 28.3 305 446-775 35-354 (368)
25 3s8s_A Histone-lysine N-methyl 99.8 4.8E-20 1.6E-24 151.8 11.0 84 151-237 6-89 (110)
26 1xi4_A Clathrin heavy chain; a 99.8 1.2E-15 4.2E-20 172.2 48.1 380 333-772 987-1376(1630)
27 4eqf_A PEX5-related protein; a 99.8 1.8E-18 6.2E-23 180.5 22.9 236 330-570 64-310 (365)
28 2lkz_A RNA-binding protein 5; 99.8 4.5E-20 1.5E-24 146.6 7.9 79 152-233 10-94 (95)
29 4eqf_A PEX5-related protein; a 99.8 1.2E-18 4.1E-23 181.9 20.1 274 473-776 67-352 (365)
30 4g1t_A Interferon-induced prot 99.8 6.1E-17 2.1E-21 175.5 32.9 384 330-746 50-460 (472)
31 4g1t_A Interferon-induced prot 99.8 1.7E-16 5.9E-21 171.9 36.1 384 295-711 50-460 (472)
32 2lxi_A RNA-binding protein 10; 99.8 3.7E-20 1.3E-24 147.1 4.6 83 152-236 2-85 (91)
33 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.3E-23 176.0 17.6 376 308-740 15-412 (449)
34 3n9u_C Cleavage and polyadenyl 99.8 2.9E-19 1E-23 157.3 10.2 83 151-236 55-139 (156)
35 3cv0_A Peroxisome targeting si 99.8 1.1E-16 3.9E-21 163.9 29.1 263 297-565 22-310 (327)
36 1b89_A Protein (clathrin heavy 99.8 3E-17 1E-21 166.7 23.9 381 248-705 13-412 (449)
37 2la6_A RNA-binding protein FUS 99.8 1.1E-18 3.9E-23 142.0 10.8 78 152-232 14-99 (99)
38 3md1_A Nuclear and cytoplasmic 99.8 1E-18 3.6E-23 137.2 10.2 80 152-234 2-81 (83)
39 3cv0_A Peroxisome targeting si 99.8 8.8E-17 3E-21 164.7 27.7 279 470-776 20-311 (327)
40 1u6f_A Tcubp1, RNA-binding pro 99.8 3.3E-18 1.1E-22 149.4 14.2 84 151-237 42-125 (139)
41 2wbr_A GW182, gawky, LD47780P; 99.8 1.1E-18 3.6E-23 131.4 9.2 73 151-232 7-79 (89)
42 3p5t_L Cleavage and polyadenyl 99.8 2.2E-19 7.5E-24 143.0 5.7 81 152-235 2-84 (90)
43 2khc_A Testis-specific RNP-typ 99.8 2.5E-18 8.6E-23 145.3 12.5 80 150-232 39-118 (118)
44 2x1f_A MRNA 3'-END-processing 99.8 1.7E-18 5.8E-23 140.0 10.8 84 151-237 2-85 (96)
45 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-18 4.8E-23 137.9 10.1 82 150-234 5-86 (87)
46 1sjq_A Polypyrimidine tract-bi 99.8 7.7E-19 2.6E-23 140.1 8.3 80 151-237 16-95 (105)
47 3ns6_A Eukaryotic translation 99.8 3.7E-19 1.3E-23 144.5 6.5 81 151-234 6-93 (100)
48 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-18 7.6E-23 136.1 9.7 80 150-232 6-85 (85)
49 3r27_A HnRNP L, heterogeneous 99.8 2.4E-18 8.3E-23 135.6 9.7 78 149-235 19-98 (100)
50 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.6E-19 2.6E-23 142.9 6.9 79 152-234 20-98 (100)
51 2cqc_A Arginine/serine-rich sp 99.8 3.7E-18 1.3E-22 138.1 10.8 81 150-233 14-94 (95)
52 2e5h_A Zinc finger CCHC-type a 99.8 4.6E-18 1.6E-22 137.2 11.3 79 151-232 16-94 (94)
53 2dnz_A Probable RNA-binding pr 99.8 3.3E-18 1.1E-22 138.3 10.3 84 151-237 5-88 (95)
54 4f25_A Polyadenylate-binding p 99.8 2.4E-18 8.4E-23 143.8 9.8 80 152-236 6-85 (115)
55 1whw_A Hypothetical protein ri 99.8 3.8E-18 1.3E-22 139.1 10.3 84 150-236 7-90 (99)
56 2jrs_A RNA-binding protein 39; 99.8 2.1E-18 7.3E-23 142.0 8.9 82 151-235 26-107 (108)
57 2do4_A Squamous cell carcinoma 99.7 5.2E-18 1.8E-22 138.5 11.1 81 151-235 17-97 (100)
58 2cpz_A CUG triplet repeat RNA- 99.7 3.7E-18 1.3E-22 143.4 10.4 83 151-236 25-107 (115)
59 2cq0_A Eukaryotic translation 99.7 2.3E-18 8E-23 141.4 8.9 85 149-236 13-97 (103)
60 1x4h_A RNA-binding protein 28; 99.7 4.5E-18 1.5E-22 142.1 10.3 85 150-237 14-104 (111)
61 3mkr_A Coatomer subunit epsilo 99.7 5.1E-16 1.8E-20 155.0 27.2 256 303-572 6-266 (291)
62 1x5u_A Splicing factor 3B subu 99.7 3.5E-18 1.2E-22 141.0 9.5 82 151-235 15-96 (105)
63 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.8E-18 1.3E-22 140.0 9.6 85 150-237 11-95 (102)
64 2dgs_A DAZ-associated protein 99.7 4.3E-18 1.5E-22 138.6 9.8 83 150-236 9-91 (99)
65 2cq4_A RNA binding motif prote 99.7 4.8E-18 1.7E-22 142.4 10.3 82 150-235 24-105 (114)
66 1oo0_B CG8781-PA, drosophila Y 99.7 4.2E-18 1.4E-22 141.8 9.9 83 150-235 25-107 (110)
67 2dnm_A SRP46 splicing factor; 99.7 3.4E-18 1.1E-22 140.5 9.2 83 150-235 12-94 (103)
68 2rs2_A Musashi-1, RNA-binding 99.7 3.6E-18 1.2E-22 141.0 9.3 83 150-236 24-106 (109)
69 2m2b_A RNA-binding protein 10; 99.7 1.7E-18 5.8E-23 148.8 7.6 81 151-235 23-109 (131)
70 2err_A Ataxin-2-binding protei 99.7 5.1E-18 1.7E-22 140.3 10.1 79 152-235 30-108 (109)
71 2cq1_A PTB-like protein L; RRM 99.7 5.4E-18 1.9E-22 136.1 9.9 81 150-237 14-94 (101)
72 2dgo_A Cytotoxic granule-assoc 99.7 5.9E-18 2E-22 142.3 10.6 84 150-236 14-97 (115)
73 1p27_B RNA-binding protein 8A; 99.7 3.8E-18 1.3E-22 141.1 9.0 82 150-234 22-103 (106)
74 1x5t_A Splicing factor 3B subu 99.7 3.8E-18 1.3E-22 138.3 8.3 84 150-236 4-88 (96)
75 3ucg_A Polyadenylate-binding p 99.7 6E-18 2E-22 134.9 9.3 80 151-234 6-85 (89)
76 1s79_A Lupus LA protein; RRM, 99.7 2.8E-18 9.6E-23 139.1 7.2 78 151-233 11-88 (103)
77 2kxn_B Transformer-2 protein h 99.7 5.2E-18 1.8E-22 144.4 9.0 83 150-235 45-127 (129)
78 2dnh_A Bruno-like 5, RNA bindi 99.7 7.3E-18 2.5E-22 139.1 9.6 84 150-237 14-100 (105)
79 3s7r_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 132.7 10.0 79 149-231 9-87 (87)
80 2fy1_A RNA-binding motif prote 99.7 6.7E-18 2.3E-22 141.1 9.4 84 149-236 5-88 (116)
81 2jwn_A Embryonic polyadenylate 99.7 1.6E-17 5.4E-22 141.8 11.8 83 149-235 34-116 (124)
82 1x5s_A Cold-inducible RNA-bind 99.7 4.7E-18 1.6E-22 139.4 8.2 84 150-236 11-94 (102)
83 2cpf_A RNA binding motif prote 99.7 5.8E-18 2E-22 137.7 8.2 83 150-235 4-89 (98)
84 2mss_A Protein (musashi1); RNA 99.7 3.9E-18 1.3E-22 130.8 6.8 75 153-231 1-75 (75)
85 2ywk_A Putative RNA-binding pr 99.7 1.2E-17 4.2E-22 134.9 10.0 80 150-233 15-94 (95)
86 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-17 5.1E-22 134.1 10.4 80 150-235 8-91 (96)
87 4a8x_A RNA-binding protein wit 99.7 7.9E-18 2.7E-22 134.0 8.6 82 151-235 4-86 (88)
88 2dgp_A Bruno-like 4, RNA bindi 99.7 6.3E-18 2.2E-22 139.8 8.4 83 151-236 13-98 (106)
89 2dng_A Eukaryotic translation 99.7 7.5E-18 2.6E-22 138.3 8.7 81 151-236 15-95 (103)
90 3mkr_A Coatomer subunit epsilo 99.7 1E-15 3.6E-20 152.8 26.1 250 444-709 7-263 (291)
91 2cpe_A RNA-binding protein EWS 99.7 9.3E-18 3.2E-22 140.5 9.4 84 150-236 14-105 (113)
92 2ad9_A Polypyrimidine tract-bi 99.7 7.5E-18 2.6E-22 138.4 8.3 82 149-237 29-110 (119)
93 2div_A TRNA selenocysteine ass 99.7 7.1E-18 2.4E-22 137.4 8.2 83 150-235 8-95 (99)
94 1wi8_A EIF-4B, eukaryotic tran 99.7 8.9E-18 3E-22 138.1 8.8 82 151-237 15-97 (104)
95 1p1t_A Cleavage stimulation fa 99.7 6.3E-18 2.2E-22 139.3 7.9 85 151-238 8-92 (104)
96 2kt5_A RNA and export factor-b 99.7 5.4E-17 1.8E-21 138.2 13.6 83 149-235 33-115 (124)
97 1x4e_A RNA binding motif, sing 99.7 2.7E-18 9.2E-23 135.4 5.0 81 150-233 4-84 (85)
98 1x4d_A Matrin 3; structural ge 99.7 6.4E-18 2.2E-22 135.2 7.2 76 150-234 14-92 (102)
99 2j8a_A Histone-lysine N-methyl 99.7 1.5E-17 5E-22 133.8 8.8 84 152-236 3-98 (136)
100 3ulh_A THO complex subunit 4; 99.7 1.9E-17 6.6E-22 137.1 9.9 81 149-233 27-107 (107)
101 3e4b_A ALGK; tetratricopeptide 99.7 7.1E-16 2.4E-20 164.7 24.7 349 302-711 9-388 (452)
102 2d9p_A Polyadenylate-binding p 99.7 1.3E-17 4.5E-22 136.9 8.7 83 150-237 14-96 (103)
103 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.9E-18 2.7E-22 130.0 6.9 76 152-231 1-76 (77)
104 2cqp_A RNA-binding protein 12; 99.7 7.2E-18 2.5E-22 137.1 6.8 81 151-234 15-95 (98)
105 1wex_A Hypothetical protein (r 99.7 2.7E-17 9.2E-22 133.1 10.0 80 150-236 14-93 (104)
106 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.3E-17 1.1E-21 134.5 10.6 82 150-236 14-95 (103)
107 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-15 3.6E-20 163.3 25.2 270 280-568 18-314 (452)
108 1x4b_A Heterogeneous nuclear r 99.7 2.7E-17 9.1E-22 138.3 10.0 83 150-236 26-108 (116)
109 2cqd_A RNA-binding region cont 99.7 2.6E-17 8.9E-22 138.4 9.9 81 150-234 16-96 (116)
110 2cpi_A CCR4-NOT transcription 99.7 2.3E-17 7.9E-22 137.0 9.4 83 150-235 14-102 (111)
111 2a3j_A U1 small nuclear ribonu 99.7 2E-17 6.8E-22 139.1 8.9 79 151-235 29-111 (127)
112 2dhg_A TRNA selenocysteine ass 99.7 9.1E-18 3.1E-22 138.3 6.7 83 150-236 8-92 (104)
113 2ki2_A SS-DNA binding protein 99.7 4.1E-18 1.4E-22 136.0 4.3 80 152-235 2-81 (90)
114 2cq3_A RNA-binding protein 9; 99.7 5.6E-17 1.9E-21 133.1 11.1 83 150-237 14-96 (103)
115 1x4a_A Splicing factor, argini 99.7 4.8E-17 1.6E-21 135.0 10.8 80 151-236 22-101 (109)
116 2ek1_A RNA-binding protein 12; 99.7 1.1E-17 3.7E-22 135.3 6.4 80 151-233 15-94 (95)
117 2cqg_A TDP-43, TAR DNA-binding 99.7 6.4E-17 2.2E-21 132.8 10.9 81 150-235 14-94 (103)
118 2nlw_A Eukaryotic translation 99.7 2.7E-17 9.3E-22 135.0 8.6 79 151-234 15-100 (105)
119 2dgv_A HnRNP M, heterogeneous 99.7 2.6E-17 8.7E-22 132.1 8.3 81 150-235 7-87 (92)
120 2dnn_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 133.5 9.0 78 151-234 16-93 (109)
121 3ex7_B RNA-binding protein 8A; 99.7 3E-17 1E-21 140.5 8.8 83 150-235 21-103 (126)
122 3spa_A Mtrpol, DNA-directed RN 99.7 3.1E-17 1.1E-21 179.4 11.1 120 610-729 126-249 (1134)
123 2dh8_A DAZ-associated protein 99.7 3E-17 1E-21 135.3 8.3 83 150-236 15-97 (105)
124 2jvr_A Nucleolar protein 3; RN 99.7 4.4E-17 1.5E-21 133.1 9.1 79 150-235 27-106 (111)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-16 4.3E-21 139.9 12.8 79 150-231 62-140 (140)
126 2hgl_A HNRPF protein, heteroge 99.7 1.7E-17 5.7E-22 141.3 6.8 80 150-234 43-125 (136)
127 2do0_A HnRNP M, heterogeneous 99.7 6.9E-17 2.4E-21 135.5 10.5 81 150-234 14-94 (114)
128 2lea_A Serine/arginine-rich sp 99.7 2.1E-17 7.3E-22 142.0 7.4 84 149-235 45-128 (135)
129 2db1_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 137.4 8.2 80 150-234 16-98 (118)
130 1x4f_A Matrin 3; structural ge 99.7 3E-17 1E-21 133.1 7.6 79 150-235 24-103 (112)
131 2cph_A RNA binding motif prote 99.7 6.4E-17 2.2E-21 134.0 9.7 85 150-235 14-98 (107)
132 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.1E-17 2.4E-21 143.9 10.5 86 149-237 37-122 (156)
133 2dis_A Unnamed protein product 99.7 3.8E-17 1.3E-21 135.8 8.1 83 150-235 7-93 (109)
134 1fj7_A Nucleolin RBD1, protein 99.7 7.7E-18 2.6E-22 137.7 3.4 80 151-235 17-96 (101)
135 2kn4_A Immunoglobulin G-bindin 99.7 7.9E-17 2.7E-21 144.3 9.9 82 151-235 70-151 (158)
136 2xnq_A Nuclear polyadenylated 99.7 1.8E-16 6E-21 127.7 10.9 73 152-235 23-96 (97)
137 2krb_A Eukaryotic translation 99.7 2.2E-17 7.5E-22 128.5 5.4 73 152-229 2-81 (81)
138 2lmi_A GRSF-1, G-rich sequence 99.7 1.8E-17 6.1E-22 136.6 4.9 82 149-235 9-93 (107)
139 2dgw_A Probable RNA-binding pr 99.7 1.2E-16 4.3E-21 127.6 9.5 78 151-234 10-87 (91)
140 2la4_A Nuclear and cytoplasmic 99.7 7.8E-17 2.7E-21 131.7 8.5 75 151-234 27-101 (101)
141 1iqt_A AUF1, heterogeneous nuc 99.7 2.7E-17 9.3E-22 126.1 5.4 75 153-231 1-75 (75)
142 2cpj_A Non-POU domain-containi 99.7 8.4E-17 2.9E-21 130.9 8.5 78 149-235 13-90 (99)
143 2cpy_A RNA-binding protein 12; 99.7 5.7E-17 1.9E-21 135.4 7.6 82 150-236 14-96 (114)
144 3uq3_A Heat shock protein STI1 99.7 1E-14 3.5E-19 143.5 25.3 226 296-535 5-236 (258)
145 1wel_A RNA-binding protein 12; 99.7 3.2E-17 1.1E-21 139.4 6.1 82 150-235 24-105 (124)
146 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-16 3.6E-21 143.9 9.8 85 150-237 71-155 (165)
147 1wez_A HnRNP H', FTP-3, hetero 99.7 4.2E-17 1.5E-21 132.3 6.4 79 151-235 15-93 (102)
148 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.4E-19 142.2 26.3 224 508-745 7-236 (258)
149 2h6f_A Protein farnesyltransfe 99.7 1.3E-14 4.5E-19 149.7 26.4 249 295-551 96-363 (382)
150 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-16 5.9E-21 130.4 9.7 76 151-237 31-106 (108)
151 1nu4_A U1A RNA binding domain; 99.7 1E-16 3.5E-21 130.0 8.1 80 150-235 7-90 (97)
152 1x5o_A RNA binding motif, sing 99.7 2.5E-16 8.7E-21 131.9 10.4 81 150-234 24-112 (114)
153 1why_A Hypothetical protein ri 99.7 2.4E-16 8.4E-21 127.5 9.9 76 151-235 17-94 (97)
154 2fc8_A NCL protein; structure 99.7 1.7E-16 5.9E-21 130.0 9.0 82 150-237 14-95 (102)
155 3q2s_C Cleavage and polyadenyl 99.7 5.8E-17 2E-21 153.1 7.0 82 151-235 68-151 (229)
156 2fc9_A NCL protein; structure 99.7 1.7E-16 5.9E-21 129.6 8.9 80 150-236 14-93 (101)
157 2pl2_A Hypothetical conserved 99.7 7.5E-15 2.6E-19 139.9 21.7 197 295-497 4-211 (217)
158 1whx_A Hypothetical protein ri 99.7 1.7E-16 5.7E-21 131.4 8.7 77 150-235 9-85 (111)
159 3lqv_A PRE-mRNA branch site pr 99.7 1.8E-16 6.3E-21 133.0 9.0 79 151-235 8-86 (115)
160 1x4g_A Nucleolysin TIAR; struc 99.7 4.8E-16 1.6E-20 128.9 11.2 78 149-235 23-100 (109)
161 2lcw_A RNA-binding protein FUS 99.5 6.9E-18 2.4E-22 141.8 0.0 86 149-237 5-98 (116)
162 2cq2_A Hypothetical protein LO 99.7 2.1E-16 7.2E-21 128.0 8.6 76 150-234 24-106 (114)
163 1wg5_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 130.3 7.9 81 150-235 14-95 (104)
164 2e5j_A Methenyltetrahydrofolat 99.7 1.9E-16 6.4E-21 128.1 8.3 77 151-235 19-95 (97)
165 1x4c_A Splicing factor, argini 99.7 5.3E-16 1.8E-20 128.1 11.0 77 150-236 14-95 (108)
166 1fjc_A Nucleolin RBD2, protein 99.6 1.8E-16 6.1E-21 128.3 7.4 79 149-235 14-92 (96)
167 2pl2_A Hypothetical conserved 99.6 1.6E-14 5.5E-19 137.6 22.4 195 330-530 4-209 (217)
168 2cpx_A Hypothetical protein FL 99.6 8.9E-17 3E-21 135.1 5.6 84 150-236 24-107 (115)
169 3spa_A Mtrpol, DNA-directed RN 99.6 3.4E-16 1.1E-20 171.4 11.3 151 575-730 126-286 (1134)
170 2hgm_A HNRPF protein, heteroge 99.6 1.2E-16 4.1E-21 133.4 5.8 80 149-234 40-121 (126)
171 2dha_A FLJ20171 protein; RRM d 99.6 1.5E-16 5.1E-21 132.7 6.3 82 149-235 21-106 (123)
172 1ouv_A Conserved hypothetical 99.6 3.8E-13 1.3E-17 133.6 32.1 224 295-536 5-252 (273)
173 2dnp_A RNA-binding protein 14; 99.6 6.2E-16 2.1E-20 123.1 9.2 75 150-235 8-82 (90)
174 2dnq_A RNA-binding protein 4B; 99.6 5.6E-16 1.9E-20 123.4 8.9 76 150-236 7-82 (90)
175 2h6f_A Protein farnesyltransfe 99.6 5.2E-14 1.8E-18 145.2 26.0 248 507-763 98-365 (382)
176 3u4t_A TPR repeat-containing p 99.6 5.2E-14 1.8E-18 139.8 25.1 244 298-546 5-260 (272)
177 2cpd_A Apobec-1 stimulating pr 99.6 9.2E-16 3.1E-20 124.7 10.0 76 150-236 14-91 (99)
178 2hvz_A Splicing factor, argini 99.6 2.8E-16 9.5E-21 128.4 6.7 76 152-235 1-76 (101)
179 1ouv_A Conserved hypothetical 99.6 6.4E-13 2.2E-17 131.9 32.5 224 330-571 5-252 (273)
180 2hgn_A Heterogeneous nuclear r 99.6 1.3E-16 4.3E-21 136.2 4.5 81 150-236 45-125 (139)
181 2dgt_A RNA-binding protein 30; 99.6 1.2E-15 4.2E-20 122.0 9.8 76 150-236 9-84 (92)
182 2xs2_A Deleted in azoospermia- 99.6 3E-16 1E-20 128.4 6.2 80 150-235 8-87 (102)
183 2kvi_A Nuclear polyadenylated 99.6 5.5E-16 1.9E-20 125.0 7.6 78 149-237 8-86 (96)
184 3zzy_A Polypyrimidine tract-bi 99.6 1.8E-15 6.1E-20 125.6 10.8 75 153-235 30-107 (130)
185 2e5i_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 123.6 12.5 74 153-235 27-103 (124)
186 2dgu_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 125.3 9.2 77 150-237 10-86 (103)
187 2f3j_A RNA and export factor b 99.6 7.7E-16 2.6E-20 138.9 8.9 81 150-234 87-167 (177)
188 4e6h_A MRNA 3'-END-processing 99.6 8.9E-12 3.1E-16 137.1 43.0 233 523-761 326-584 (679)
189 3d2w_A TAR DNA-binding protein 99.6 2E-15 6.7E-20 119.1 10.0 73 151-235 11-85 (89)
190 2diu_A KIAA0430 protein; struc 99.6 1E-15 3.4E-20 116.1 7.8 70 153-235 11-85 (96)
191 4f02_A Polyadenylate-binding p 99.6 1.4E-15 4.6E-20 143.7 10.7 82 152-236 16-97 (213)
192 1x5p_A Negative elongation fac 99.6 2E-15 6.8E-20 122.0 10.1 76 150-236 14-89 (97)
193 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.8E-20 119.8 8.7 75 150-232 11-85 (85)
194 3u4t_A TPR repeat-containing p 99.6 1.7E-13 5.9E-18 136.0 26.2 233 369-605 6-250 (272)
195 1sjr_A Polypyrimidine tract-bi 99.6 1.6E-15 5.4E-20 131.0 9.4 77 152-235 47-125 (164)
196 1wg1_A KIAA1579 protein, homol 99.6 1.8E-15 6E-20 119.7 9.0 75 150-234 4-78 (88)
197 2i2y_A Fusion protein consists 99.6 1.3E-15 4.5E-20 134.6 9.2 78 150-235 72-149 (150)
198 3egn_A RNA-binding protein 40; 99.6 3.2E-16 1.1E-20 137.3 5.0 83 150-235 44-131 (143)
199 2pe8_A Splicing factor 45; RRM 99.6 3.3E-15 1.1E-19 121.1 10.4 83 150-234 7-94 (105)
200 2e44_A Insulin-like growth fac 99.6 1.5E-15 5.2E-20 122.7 8.4 77 151-234 15-92 (96)
201 2cqh_A IGF-II mRNA-binding pro 99.6 7E-16 2.4E-20 123.8 6.0 78 150-237 7-86 (93)
202 2ho1_A Type 4 fimbrial biogene 99.6 3.6E-13 1.2E-17 132.0 26.7 201 296-500 37-238 (252)
203 4e6h_A MRNA 3'-END-processing 99.6 1.4E-11 4.9E-16 135.5 41.4 429 264-711 49-571 (679)
204 2ho1_A Type 4 fimbrial biogene 99.6 4.7E-13 1.6E-17 131.1 26.6 200 542-745 38-238 (252)
205 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.2E-14 2.1E-18 139.4 20.4 121 308-430 17-140 (275)
206 2dnl_A Cytoplasmic polyadenyla 99.6 1.9E-15 6.5E-20 126.1 7.7 77 150-232 7-86 (114)
207 1wf1_A RNA-binding protein RAL 99.6 2.8E-15 9.7E-20 124.4 8.6 74 151-235 27-101 (110)
208 2e5g_A U6 snRNA-specific termi 99.6 2.3E-15 7.9E-20 120.8 7.7 76 151-235 8-83 (94)
209 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.4E-14 1.9E-18 139.8 19.5 249 341-599 15-269 (275)
210 3pgw_S U1-70K; protein-RNA com 99.6 5.7E-15 2E-19 153.4 12.7 84 150-236 101-184 (437)
211 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4E-18 134.5 21.3 201 295-500 22-222 (243)
212 2vq2_A PILW, putative fimbrial 99.6 7.6E-13 2.6E-17 126.9 26.4 203 295-500 7-211 (225)
213 1b7f_A Protein (SXL-lethal pro 99.6 5.3E-15 1.8E-19 134.6 9.7 82 151-235 3-84 (168)
214 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.8E-17 125.7 26.7 201 541-745 8-211 (225)
215 3pgw_A U1-A; protein-RNA compl 99.6 4.4E-14 1.5E-18 140.4 17.1 75 150-232 206-281 (282)
216 2hzc_A Splicing factor U2AF 65 99.6 5.5E-15 1.9E-19 117.0 8.2 71 150-230 5-86 (87)
217 2q7f_A YRRB protein; TPR, prot 99.6 2.4E-13 8.2E-18 132.3 21.8 128 614-744 94-221 (243)
218 1fxl_A Paraneoplastic encephal 99.6 8.9E-15 3E-19 133.1 10.5 82 151-235 2-83 (167)
219 3beg_B Splicing factor, argini 99.6 5.2E-15 1.8E-19 123.4 8.2 75 150-234 15-94 (115)
220 3md3_A Nuclear and cytoplasmic 99.6 8.9E-15 3.1E-19 132.9 10.2 79 151-232 87-165 (166)
221 4f02_A Polyadenylate-binding p 99.6 7.5E-15 2.6E-19 138.6 10.0 81 150-235 102-182 (213)
222 2cjk_A Nuclear polyadenylated 99.5 5.1E-15 1.8E-19 134.5 7.8 81 150-234 86-166 (167)
223 2g4b_A Splicing factor U2AF 65 99.5 1.1E-14 3.6E-19 133.2 9.6 79 151-232 94-172 (172)
224 2bz2_A Negative elongation fac 99.5 9.1E-15 3.1E-19 122.6 8.4 76 150-236 38-113 (121)
225 4a1s_A PINS, partner of inscut 99.5 1.2E-13 4.1E-18 146.4 18.4 276 298-605 50-372 (411)
226 3tyt_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 133.9 10.3 77 150-234 3-80 (205)
227 3sf4_A G-protein-signaling mod 99.5 3E-13 1E-17 143.0 20.7 203 295-498 8-254 (406)
228 2yh0_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 132.9 12.0 83 150-235 113-195 (198)
229 2qfj_A FBP-interacting repress 99.5 1.9E-14 6.4E-19 137.1 9.9 85 148-235 122-206 (216)
230 1l3k_A Heterogeneous nuclear r 99.5 2E-14 6.7E-19 134.6 9.8 83 149-235 11-93 (196)
231 2ond_A Cleavage stimulation fa 99.5 4E-12 1.4E-16 128.5 27.2 218 264-500 33-270 (308)
232 1wf0_A TDP-43, TAR DNA-binding 99.5 1E-14 3.4E-19 115.5 6.1 75 150-236 4-80 (88)
233 3sf4_A G-protein-signaling mod 99.5 4.7E-13 1.6E-17 141.5 20.9 86 612-697 268-363 (406)
234 3u1l_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.7E-19 133.4 8.6 77 149-234 132-229 (240)
235 4a1s_A PINS, partner of inscut 99.5 3.9E-13 1.4E-17 142.5 19.2 97 366-463 48-153 (411)
236 2voo_A Lupus LA protein; RNA-b 99.5 2.6E-14 9E-19 131.0 8.6 80 150-234 108-187 (193)
237 3ro2_A PINS homolog, G-protein 99.5 5.2E-13 1.8E-17 136.9 19.3 277 297-605 6-332 (338)
238 2qfj_A FBP-interacting repress 99.5 3.2E-14 1.1E-18 135.5 9.3 86 147-235 24-109 (216)
239 2cjk_A Nuclear polyadenylated 99.5 3.1E-14 1.1E-18 129.3 8.5 81 150-235 2-82 (167)
240 4abn_A Tetratricopeptide repea 99.5 7.4E-13 2.5E-17 142.3 20.3 194 295-494 101-315 (474)
241 3vtx_A MAMA; tetratricopeptide 99.5 6E-12 2.1E-16 116.4 23.5 167 295-465 4-170 (184)
242 1l3k_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 131.6 9.4 83 151-237 104-186 (196)
243 1b7f_A Protein (SXL-lethal pro 99.5 5.5E-14 1.9E-18 127.9 9.2 78 151-231 89-168 (168)
244 3md3_A Nuclear and cytoplasmic 99.5 6.1E-14 2.1E-18 127.3 9.5 80 152-235 1-80 (166)
245 1jmt_A Splicing factor U2AF 35 99.5 2.5E-14 8.7E-19 115.9 5.2 72 156-231 20-103 (104)
246 3ro2_A PINS homolog, G-protein 99.5 1E-12 3.6E-17 134.7 18.7 64 612-675 264-332 (338)
247 2ond_A Cleavage stimulation fa 99.5 2.4E-11 8.1E-16 122.8 28.3 217 313-534 33-269 (308)
248 1fxl_A Paraneoplastic encephal 99.5 9E-14 3.1E-18 126.3 9.3 79 150-231 87-167 (167)
249 3vtx_A MAMA; tetratricopeptide 99.5 1E-11 3.5E-16 114.8 22.8 166 575-744 4-169 (184)
250 3v4m_A Splicing factor U2AF 65 99.5 1.7E-13 5.9E-18 111.0 8.9 81 151-234 5-97 (105)
251 4abn_A Tetratricopeptide repea 99.5 3E-12 1E-16 137.5 21.2 216 521-742 83-318 (474)
252 1fje_B Nucleolin RBD12, protei 99.5 1.7E-13 5.8E-18 125.4 9.8 77 150-234 98-174 (175)
253 3nmr_A Cugbp ELAV-like family 99.5 1.7E-13 5.8E-18 125.6 9.8 78 150-231 94-174 (175)
254 3nmr_A Cugbp ELAV-like family 99.5 1.2E-13 4.1E-18 126.6 8.6 83 150-235 2-89 (175)
255 3ulq_A Response regulator aspa 99.4 8.6E-12 2.9E-16 130.6 23.8 231 512-744 109-367 (383)
256 3pgw_A U1-A; protein-RNA compl 99.4 2.2E-13 7.4E-18 135.4 10.3 81 149-235 7-91 (282)
257 3ulq_A Response regulator aspa 99.4 1.1E-11 3.8E-16 129.8 23.6 228 306-533 22-291 (383)
258 2dit_A HIV TAT specific factor 99.4 4.7E-13 1.6E-17 111.0 9.6 79 150-235 14-103 (112)
259 3smz_A Protein raver-1, ribonu 99.4 5E-13 1.7E-17 132.9 10.7 87 149-239 182-269 (284)
260 2ghp_A U4/U6 snRNA-associated 99.4 3.3E-13 1.1E-17 134.9 9.3 82 149-234 208-291 (292)
261 3sde_A Paraspeckle component 1 99.4 4.8E-13 1.6E-17 130.5 10.2 78 148-234 19-96 (261)
262 2adc_A Polypyrimidine tract-bi 99.4 4.8E-13 1.6E-17 127.8 9.6 77 150-234 33-110 (229)
263 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-12 4.3E-17 132.5 13.2 170 295-464 26-223 (311)
264 3ue2_A Poly(U)-binding-splicin 99.4 5.3E-13 1.8E-17 110.1 8.3 82 150-234 19-109 (118)
265 1fje_B Nucleolin RBD12, protei 99.4 1.1E-13 3.7E-18 126.7 4.0 82 149-235 11-92 (175)
266 3smz_A Protein raver-1, ribonu 99.4 8.3E-13 2.8E-17 131.3 10.6 83 150-235 94-176 (284)
267 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-12 4.6E-17 132.3 12.0 170 330-499 26-223 (311)
268 3tyt_A Heterogeneous nuclear r 99.4 6.9E-13 2.4E-17 123.1 8.2 77 150-231 122-204 (205)
269 1qm9_A Polypyrimidine tract-bi 99.4 7.2E-13 2.5E-17 123.9 7.8 76 151-234 3-79 (198)
270 3q15_A PSP28, response regulat 99.4 6.8E-11 2.3E-15 123.4 22.9 230 512-744 107-364 (378)
271 4gyw_A UDP-N-acetylglucosamine 99.3 3.2E-11 1.1E-15 134.5 20.8 166 295-464 8-173 (723)
272 3q15_A PSP28, response regulat 99.3 1.2E-10 4.2E-15 121.4 24.1 309 296-639 10-364 (378)
273 1hz4_A MALT regulatory protein 99.3 4.6E-10 1.6E-14 116.9 27.5 235 299-533 17-280 (373)
274 2adc_A Polypyrimidine tract-bi 99.3 3.1E-12 1.1E-16 122.1 9.5 77 150-234 150-228 (229)
275 3as5_A MAMA; tetratricopeptide 99.3 1.4E-10 4.6E-15 107.1 20.4 165 297-465 9-173 (186)
276 2g4b_A Splicing factor U2AF 65 99.3 2.9E-12 1E-16 116.8 8.7 75 150-234 3-88 (172)
277 4gyw_A UDP-N-acetylglucosamine 99.3 7.7E-11 2.6E-15 131.5 21.1 166 330-499 8-173 (723)
278 1qm9_A Polypyrimidine tract-bi 99.3 2.5E-12 8.5E-17 120.2 7.8 76 151-234 120-197 (198)
279 3sde_A Paraspeckle component 1 99.3 2.9E-12 9.8E-17 125.0 8.3 81 150-234 95-179 (261)
280 1hz4_A MALT regulatory protein 99.3 9.4E-10 3.2E-14 114.6 28.0 273 473-745 16-322 (373)
281 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.8E-12 1.3E-16 101.3 7.3 65 161-235 27-91 (100)
282 4i17_A Hypothetical protein; T 99.3 2.1E-10 7.3E-15 110.0 21.2 207 295-513 6-221 (228)
283 2ghp_A U4/U6 snRNA-associated 99.3 4.3E-12 1.5E-16 126.7 9.1 84 149-236 115-199 (292)
284 3as5_A MAMA; tetratricopeptide 99.3 3.1E-10 1E-14 104.7 20.5 162 579-744 11-172 (186)
285 2yh0_A Splicing factor U2AF 65 99.3 6.4E-12 2.2E-16 117.6 8.8 75 150-234 3-88 (198)
286 3tht_A Alkylated DNA repair pr 99.3 6.7E-12 2.3E-16 123.8 9.2 76 150-234 17-99 (345)
287 4i17_A Hypothetical protein; T 99.2 7.9E-10 2.7E-14 106.0 21.5 203 539-754 5-216 (228)
288 3s6e_A RNA-binding protein 39; 99.2 1.5E-11 5.1E-16 100.6 7.1 76 152-234 8-93 (114)
289 3dra_A Protein farnesyltransfe 99.2 2.9E-09 1E-13 105.1 24.9 217 264-499 50-286 (306)
290 3edt_B KLC 2, kinesin light ch 99.2 1E-10 3.5E-15 116.3 13.9 229 264-500 18-281 (283)
291 3edt_B KLC 2, kinesin light ch 99.2 1.8E-10 6.1E-15 114.6 15.1 157 308-464 13-197 (283)
292 2dnr_A Synaptojanin-1; RRM dom 99.2 6.9E-11 2.4E-15 88.9 8.4 72 151-234 7-86 (91)
293 3dra_A Protein farnesyltransfe 99.2 1.8E-08 6.1E-13 99.4 27.3 223 307-534 43-286 (306)
294 1qqe_A Vesicular transport pro 99.1 1.8E-09 6.2E-14 107.8 19.6 160 340-499 46-227 (292)
295 3qky_A Outer membrane assembly 99.1 2.8E-09 9.6E-14 104.6 19.6 104 294-398 13-129 (261)
296 1qqe_A Vesicular transport pro 99.1 2.6E-09 9E-14 106.6 18.6 175 521-710 32-228 (292)
297 3urz_A Uncharacterized protein 99.1 2.8E-09 9.7E-14 100.3 17.5 189 297-511 5-195 (208)
298 1owx_A Lupus LA protein, SS-B, 99.1 2E-10 6.8E-15 93.4 8.0 80 148-234 15-96 (121)
299 2fo7_A Synthetic consensus TPR 99.1 7.3E-09 2.5E-13 89.4 17.8 130 298-430 3-132 (136)
300 3urz_A Uncharacterized protein 99.1 6.5E-09 2.2E-13 97.8 18.5 139 405-549 58-198 (208)
301 2uy1_A Cleavage stimulation fa 99.1 5.6E-07 1.9E-11 96.2 35.5 125 612-744 287-412 (493)
302 2uy1_A Cleavage stimulation fa 99.1 3.6E-07 1.2E-11 97.7 33.4 371 264-674 12-412 (493)
303 3qky_A Outer membrane assembly 99.0 8.1E-09 2.8E-13 101.3 19.2 186 330-535 14-224 (261)
304 3rjv_A Putative SEL1 repeat pr 99.0 1.5E-08 5E-13 95.6 20.1 176 314-501 4-198 (212)
305 2pzi_A Probable serine/threoni 99.0 1.7E-09 5.9E-14 121.5 15.3 152 308-464 403-562 (681)
306 2pzi_A Probable serine/threoni 99.0 1.2E-09 4.3E-14 122.6 14.2 169 263-451 407-583 (681)
307 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.7E-08 9.2E-13 94.9 21.5 187 295-501 3-214 (225)
308 3mv2_B Coatomer subunit epsilo 99.0 3.4E-08 1.2E-12 96.2 21.9 180 385-571 85-283 (310)
309 3mv2_B Coatomer subunit epsilo 99.0 3.5E-08 1.2E-12 96.1 21.8 158 581-744 105-281 (310)
310 4ga2_A E3 SUMO-protein ligase 99.0 9.8E-10 3.3E-14 97.1 10.1 145 302-450 3-148 (150)
311 2fo7_A Synthetic consensus TPR 99.0 1.8E-08 6.1E-13 86.9 18.0 129 613-744 3-131 (136)
312 3rjv_A Putative SEL1 repeat pr 99.0 3E-08 1E-12 93.4 20.8 177 265-467 4-199 (212)
313 3q7a_A Farnesyltransferase alp 99.0 5.1E-08 1.7E-12 97.0 23.1 169 264-451 71-257 (349)
314 1ufw_A Synaptojanin 2; RNP dom 99.0 6.2E-10 2.1E-14 84.1 6.9 72 150-233 14-94 (95)
315 4ga2_A E3 SUMO-protein ligase 99.0 3.1E-09 1E-13 93.9 12.5 135 264-416 14-149 (150)
316 3q7a_A Farnesyltransferase alp 99.0 2E-07 6.9E-12 92.7 25.6 180 303-487 61-258 (349)
317 3qou_A Protein YBBN; thioredox 99.0 1.7E-08 6E-13 100.2 17.8 165 295-463 116-282 (287)
318 2yhc_A BAMD, UPF0169 lipoprote 98.9 8.1E-08 2.8E-12 91.5 21.2 188 330-538 3-216 (225)
319 2vsy_A XCC0866; transferase, g 98.9 1.8E-08 6.3E-13 111.2 19.0 151 263-431 5-158 (568)
320 2r5s_A Uncharacterized protein 98.9 9.9E-09 3.4E-13 93.6 12.7 160 299-462 9-170 (176)
321 2ifu_A Gamma-SNAP; membrane fu 98.9 2.2E-08 7.7E-13 100.6 16.4 164 309-498 4-182 (307)
322 2r5s_A Uncharacterized protein 98.9 1.5E-08 5E-13 92.5 13.7 162 333-498 8-171 (176)
323 2vsy_A XCC0866; transferase, g 98.9 2.7E-08 9.2E-13 109.8 18.4 155 309-467 2-159 (568)
324 2ifu_A Gamma-SNAP; membrane fu 98.9 2.2E-08 7.6E-13 100.7 16.1 198 484-708 4-222 (307)
325 3qou_A Protein YBBN; thioredox 98.9 4.2E-08 1.4E-12 97.4 17.3 167 330-499 116-283 (287)
326 4gco_A Protein STI-1; structur 98.9 3.2E-08 1.1E-12 84.1 13.8 110 296-408 13-122 (126)
327 3dss_A Geranylgeranyl transfer 98.8 2.1E-06 7.1E-11 85.1 26.4 167 264-449 47-240 (331)
328 3dxb_A Thioredoxin N-terminall 98.8 5.8E-09 2E-13 98.8 7.0 70 163-234 141-213 (222)
329 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.9E-07 1.3E-11 85.9 19.1 128 298-431 8-151 (213)
330 4f3v_A ESX-1 secretion system 98.8 2.4E-08 8.1E-13 96.0 10.5 183 264-466 23-238 (282)
331 4gco_A Protein STI-1; structur 98.8 1.9E-07 6.6E-12 79.2 14.9 98 332-431 14-111 (126)
332 3gyz_A Chaperone protein IPGC; 98.8 2.3E-08 7.8E-13 87.7 9.2 99 295-395 35-133 (151)
333 1p5q_A FKBP52, FK506-binding p 98.7 2.2E-08 7.7E-13 101.8 10.1 148 264-428 130-292 (336)
334 3dss_A Geranylgeranyl transfer 98.7 7E-06 2.4E-10 81.3 27.5 192 304-500 37-267 (331)
335 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.9E-07 3E-11 83.4 19.6 124 581-710 11-150 (213)
336 1a17_A Serine/threonine protei 98.7 4.4E-07 1.5E-11 81.5 16.7 129 297-428 14-144 (166)
337 2qfc_A PLCR protein; TPR, HTH, 98.7 4.9E-07 1.7E-11 90.1 18.1 95 299-393 78-182 (293)
338 3u3w_A Transcriptional activat 98.7 3.9E-07 1.3E-11 90.8 17.1 161 338-498 82-264 (293)
339 3u3w_A Transcriptional activat 98.7 2.6E-06 8.9E-11 84.8 23.0 126 372-497 81-222 (293)
340 1a17_A Serine/threonine protei 98.7 6.6E-07 2.2E-11 80.3 16.8 129 332-463 14-144 (166)
341 2vgx_A Chaperone SYCD; alterna 98.7 2.1E-07 7.2E-12 81.7 13.0 111 269-396 9-119 (148)
342 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.8E-12 82.1 12.0 97 367-465 37-133 (151)
343 2c2l_A CHIP, carboxy terminus 98.7 1.2E-07 4.1E-12 93.7 11.9 98 296-395 4-101 (281)
344 1na0_A Designed protein CTPR3; 98.7 9.1E-07 3.1E-11 74.7 16.0 114 296-412 9-122 (125)
345 2qfc_A PLCR protein; TPR, HTH, 98.6 2E-06 6.8E-11 85.7 20.4 159 617-775 81-261 (293)
346 2lni_A Stress-induced-phosphop 98.6 6E-07 2.1E-11 76.9 14.5 118 295-415 15-132 (133)
347 2c2l_A CHIP, carboxy terminus 98.6 1.9E-07 6.5E-12 92.3 12.3 99 330-430 3-101 (281)
348 1na0_A Designed protein CTPR3; 98.6 1.3E-06 4.5E-11 73.7 16.0 113 331-446 9-121 (125)
349 2vyi_A SGTA protein; chaperone 98.6 8.6E-07 2.9E-11 75.6 14.9 119 296-417 12-130 (131)
350 2xcb_A PCRH, regulatory protei 98.6 2.1E-07 7.3E-12 81.1 11.1 100 295-396 17-116 (142)
351 2lni_A Stress-induced-phosphop 98.6 8.5E-07 2.9E-11 76.0 14.3 117 330-449 15-131 (133)
352 2e2e_A Formate-dependent nitri 98.6 6.7E-07 2.3E-11 81.4 14.1 118 264-398 27-147 (177)
353 2e2e_A Formate-dependent nitri 98.6 5.3E-07 1.8E-11 82.1 13.3 123 306-431 20-145 (177)
354 3gw4_A Uncharacterized protein 98.6 3.9E-07 1.3E-11 85.0 12.7 121 307-428 3-134 (203)
355 4f3v_A ESX-1 secretion system 98.6 8.1E-07 2.8E-11 85.3 14.5 187 308-500 18-237 (282)
356 2vgx_A Chaperone SYCD; alterna 98.6 2.3E-07 7.9E-12 81.4 10.0 98 331-430 21-118 (148)
357 2vyi_A SGTA protein; chaperone 98.6 2.2E-06 7.7E-11 72.9 16.2 118 647-767 13-130 (131)
358 1p5q_A FKBP52, FK506-binding p 98.6 1.2E-06 4E-11 89.1 16.1 151 309-462 126-291 (336)
359 3gw4_A Uncharacterized protein 98.5 6.9E-07 2.3E-11 83.3 13.2 156 588-744 4-175 (203)
360 2fbn_A 70 kDa peptidylprolyl i 98.5 1.2E-07 4.2E-12 88.2 7.7 120 333-455 40-175 (198)
361 3upv_A Heat shock protein STI1 98.5 2.8E-06 9.6E-11 72.0 14.6 97 297-395 5-101 (126)
362 3upv_A Heat shock protein STI1 98.5 3.6E-06 1.2E-10 71.4 14.9 97 647-745 5-101 (126)
363 2xcb_A PCRH, regulatory protei 98.4 2.5E-06 8.4E-11 74.2 13.3 98 331-430 18-115 (142)
364 3sz7_A HSC70 cochaperone (SGT) 98.4 2.9E-06 1E-10 75.9 14.1 102 295-398 10-111 (164)
365 2fbn_A 70 kDa peptidylprolyl i 98.4 3E-06 1E-10 78.7 14.5 132 297-430 39-186 (198)
366 1elw_A TPR1-domain of HOP; HOP 98.4 8.2E-06 2.8E-10 67.8 15.7 108 297-407 5-112 (118)
367 2l9w_A U4/U6 snRNA-associated- 98.4 1.4E-06 4.7E-11 67.0 9.2 72 151-231 21-97 (117)
368 3sz7_A HSC70 cochaperone (SGT) 98.4 3.3E-06 1.1E-10 75.6 13.3 100 330-431 10-109 (164)
369 4gcn_A Protein STI-1; structur 98.4 5E-06 1.7E-10 70.5 13.6 105 648-755 10-120 (127)
370 4gcn_A Protein STI-1; structur 98.4 4.8E-06 1.7E-10 70.6 13.3 59 299-358 11-69 (127)
371 1dce_A Protein (RAB geranylger 98.4 9E-06 3.1E-10 88.3 18.4 170 264-452 46-242 (567)
372 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 6E-07 2E-11 95.5 8.5 125 295-421 267-405 (457)
373 1elr_A TPR2A-domain of HOP; HO 98.3 5E-06 1.7E-10 70.7 12.6 112 648-762 6-123 (131)
374 3q49_B STIP1 homology and U bo 98.3 6.5E-06 2.2E-10 70.9 13.5 97 295-393 8-104 (137)
375 2dba_A Smooth muscle cell asso 98.3 1.2E-05 4.3E-10 70.1 15.3 109 295-407 27-139 (148)
376 1elw_A TPR1-domain of HOP; HOP 98.3 2.5E-05 8.5E-10 64.8 16.5 94 649-744 7-100 (118)
377 3q49_B STIP1 homology and U bo 98.3 1.2E-05 4.1E-10 69.2 14.3 98 645-744 8-105 (137)
378 1hxi_A PEX5, peroxisome target 98.3 5.1E-06 1.7E-10 69.7 11.1 92 301-394 22-113 (121)
379 1hxi_A PEX5, peroxisome target 98.3 5.1E-06 1.7E-10 69.7 11.1 97 333-431 19-115 (121)
380 2dba_A Smooth muscle cell asso 98.3 1.8E-05 6.3E-10 68.9 15.2 98 330-430 27-128 (148)
381 1elr_A TPR2A-domain of HOP; HO 98.3 8.1E-06 2.8E-10 69.4 12.0 98 297-395 5-108 (131)
382 4b4t_Q 26S proteasome regulato 98.3 3.1E-05 1.1E-09 81.9 18.9 164 370-533 59-243 (434)
383 2kck_A TPR repeat; tetratricop 98.3 8.6E-06 2.9E-10 66.9 11.5 98 332-430 7-106 (112)
384 4b4t_Q 26S proteasome regulato 98.2 5.8E-05 2E-09 79.8 20.3 55 514-568 12-82 (434)
385 1wao_1 Serine/threonine protei 98.2 9.3E-06 3.2E-10 86.6 13.7 117 248-390 16-134 (477)
386 1dce_A Protein (RAB geranylger 98.2 4.9E-05 1.7E-09 82.5 19.5 174 308-486 40-241 (567)
387 2xev_A YBGF; tetratricopeptide 98.2 3.5E-05 1.2E-09 65.4 14.8 95 300-396 6-106 (129)
388 3ro3_A PINS homolog, G-protein 98.2 9.7E-06 3.3E-10 72.0 11.2 98 297-394 10-117 (164)
389 2kck_A TPR repeat; tetratricop 98.2 1.4E-05 4.9E-10 65.6 11.5 96 648-745 8-106 (112)
390 2xev_A YBGF; tetratricopeptide 98.2 4.9E-05 1.7E-09 64.4 14.9 94 335-430 6-105 (129)
391 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2E-05 6.9E-10 83.6 15.0 144 309-455 247-404 (457)
392 3rkv_A Putative peptidylprolyl 98.1 2.4E-05 8.1E-10 69.7 12.8 65 680-745 62-126 (162)
393 2hr2_A Hypothetical protein; a 98.1 2.9E-05 9.9E-10 67.0 12.4 63 297-359 12-85 (159)
394 2hr2_A Hypothetical protein; a 98.1 2.8E-05 9.7E-10 67.1 12.1 98 332-430 12-131 (159)
395 1ihg_A Cyclophilin 40; ppiase 98.1 1.9E-05 6.4E-10 81.1 13.1 139 297-457 224-362 (370)
396 1wao_1 Serine/threonine protei 98.1 6.5E-06 2.2E-10 87.8 9.9 121 302-425 12-134 (477)
397 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.8E-10 70.3 11.3 132 613-744 11-157 (164)
398 1ihg_A Cyclophilin 40; ppiase 98.1 2.3E-05 8E-10 80.3 13.3 139 333-493 225-363 (370)
399 3rkv_A Putative peptidylprolyl 98.1 1.9E-05 6.4E-10 70.4 10.9 116 296-430 11-126 (162)
400 2if4_A ATFKBP42; FKBP-like, al 98.1 8.4E-06 2.9E-10 82.7 9.6 148 297-465 180-328 (338)
401 3k9i_A BH0479 protein; putativ 98.1 7.4E-06 2.5E-10 68.3 7.1 86 309-395 3-90 (117)
402 3k9i_A BH0479 protein; putativ 98.1 5.7E-06 2E-10 69.0 6.4 86 659-745 3-90 (117)
403 1klx_A Cysteine rich protein B 98.0 4E-05 1.4E-09 65.9 11.2 110 311-431 10-127 (138)
404 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.6E-10 80.6 9.2 148 332-500 180-328 (338)
405 1klx_A Cysteine rich protein B 97.9 0.00016 5.3E-09 62.1 13.4 111 345-466 9-127 (138)
406 2l6j_A TPR repeat-containing p 97.9 2.6E-05 9.1E-10 64.0 8.0 94 681-777 4-104 (111)
407 1zu2_A Mitochondrial import re 97.8 4.6E-05 1.6E-09 65.6 8.1 97 661-761 17-134 (158)
408 1wey_A Calcipressin 1; structu 97.8 5E-05 1.7E-09 58.6 7.2 73 152-233 6-83 (104)
409 1zu2_A Mitochondrial import re 97.8 0.0001 3.6E-09 63.4 9.2 91 261-369 16-127 (158)
410 2kat_A Uncharacterized protein 97.8 0.00012 4.1E-09 60.5 9.4 81 264-360 2-82 (115)
411 2l6j_A TPR repeat-containing p 97.7 2.5E-05 8.6E-10 64.1 4.8 62 333-395 6-67 (111)
412 3n71_A Histone lysine methyltr 97.7 0.00018 6.1E-09 76.1 11.9 125 305-429 318-463 (490)
413 2kat_A Uncharacterized protein 97.7 0.00018 6.2E-09 59.4 9.2 78 350-429 4-81 (115)
414 3n71_A Histone lysine methyltr 97.7 0.00019 6.4E-09 75.9 11.2 126 620-745 318-464 (490)
415 1na3_A Designed protein CTPR2; 97.6 0.00047 1.6E-08 53.7 10.9 61 368-429 11-71 (91)
416 1na3_A Designed protein CTPR2; 97.6 0.00052 1.8E-08 53.5 10.7 77 333-411 11-87 (91)
417 4ady_A RPN2, 26S proteasome re 97.5 0.17 5.8E-06 56.7 31.7 272 481-763 384-673 (963)
418 3ma5_A Tetratricopeptide repea 97.4 0.00065 2.2E-08 54.3 8.8 64 365-429 6-69 (100)
419 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.7E-08 52.9 8.9 63 680-743 6-68 (100)
420 3u64_A Protein TP_0956; tetrat 97.1 0.035 1.2E-06 52.7 18.1 87 382-468 179-272 (301)
421 3mkq_A Coatomer beta'-subunit; 96.9 0.044 1.5E-06 62.9 21.5 151 305-494 608-759 (814)
422 3ly7_A Transcriptional activat 96.9 0.0037 1.3E-07 62.0 10.4 64 330-395 276-339 (372)
423 1whv_A Poly(A)-specific ribonu 96.9 0.0032 1.1E-07 47.6 7.3 52 153-214 18-69 (100)
424 3ly7_A Transcriptional activat 96.9 0.02 6.8E-07 56.8 14.9 75 678-756 274-348 (372)
425 2dhx_A Poly (ADP-ribose) polym 96.7 0.0056 1.9E-07 47.0 7.2 69 151-231 8-81 (104)
426 3mkq_B Coatomer subunit alpha; 96.7 0.14 4.9E-06 44.6 17.1 98 342-460 16-113 (177)
427 3u64_A Protein TP_0956; tetrat 96.6 0.13 4.4E-06 48.8 17.8 93 347-441 179-282 (301)
428 3qww_A SET and MYND domain-con 96.6 0.0035 1.2E-07 65.0 8.1 86 659-744 311-410 (433)
429 1wy6_A Hypothetical protein ST 96.6 0.15 5.3E-06 41.4 15.2 141 586-748 17-157 (172)
430 2kc7_A BFR218_protein; tetratr 96.5 0.018 6.1E-07 45.4 10.1 55 304-359 8-63 (99)
431 2kc7_A BFR218_protein; tetratr 96.5 0.016 5.4E-07 45.7 9.7 56 339-395 8-64 (99)
432 3qwp_A SET and MYND domain-con 96.5 0.0084 2.9E-07 62.3 10.1 90 655-744 296-399 (429)
433 3mkq_A Coatomer beta'-subunit; 96.5 0.044 1.5E-06 62.9 17.1 172 549-768 607-779 (814)
434 3qww_A SET and MYND domain-con 96.4 0.0076 2.6E-07 62.5 8.9 87 308-394 310-410 (433)
435 3lvg_A Clathrin heavy chain 1; 96.4 3.8E-07 1.3E-11 91.3 -22.2 264 296-596 54-324 (624)
436 3qwp_A SET and MYND domain-con 96.4 0.014 4.7E-07 60.7 10.6 93 302-394 293-399 (429)
437 3mkq_B Coatomer subunit alpha; 96.4 0.17 5.9E-06 44.1 15.6 103 373-496 12-114 (177)
438 1wwh_A Nucleoporin 35, nucleop 96.3 0.013 4.5E-07 46.8 7.7 71 151-232 24-95 (119)
439 3lvg_A Clathrin heavy chain 1; 96.3 6.8E-06 2.3E-10 82.5 -13.7 176 294-484 81-276 (624)
440 1pc2_A Mitochondria fission pr 96.3 0.029 1E-06 47.6 10.3 82 348-430 15-100 (152)
441 3bee_A Putative YFRE protein; 96.3 0.031 1.1E-06 43.4 9.6 66 679-745 4-72 (93)
442 1uw4_A UPF3X; nonsense mediate 96.2 0.031 1E-06 42.5 8.9 69 152-222 2-71 (91)
443 1pc2_A Mitochondria fission pr 96.2 0.039 1.3E-06 46.9 10.2 84 663-750 15-103 (152)
444 2v5f_A Prolyl 4-hydroxylase su 96.2 0.04 1.4E-06 44.0 10.0 66 365-430 4-75 (104)
445 3bee_A Putative YFRE protein; 96.0 0.059 2E-06 41.8 10.0 65 365-430 5-72 (93)
446 4gns_B Protein CSD3, chitin bi 95.9 2.8 9.5E-05 46.3 26.0 128 334-462 251-397 (754)
447 1wy6_A Hypothetical protein ST 95.8 0.62 2.1E-05 38.0 15.4 138 308-467 19-156 (172)
448 4ady_A RPN2, 26S proteasome re 95.7 3.7 0.00013 46.2 38.4 222 551-776 384-619 (963)
449 2v5f_A Prolyl 4-hydroxylase su 95.6 0.11 3.8E-06 41.3 10.3 66 295-360 4-75 (104)
450 3ctr_A Poly(A)-specific ribonu 95.2 0.031 1.1E-06 42.5 5.4 52 153-214 8-59 (101)
451 3pq1_A Poly(A) RNA polymerase; 95.1 0.014 4.8E-07 59.8 4.1 56 151-213 53-108 (464)
452 3p3d_A Nucleoporin 53; structu 95.0 0.025 8.5E-07 45.8 4.4 78 153-234 9-99 (132)
453 1nzn_A CGI-135 protein, fissio 94.7 0.2 6.7E-06 40.9 9.2 89 659-750 14-106 (126)
454 4h7y_A Dual specificity protei 94.4 0.72 2.5E-05 38.6 11.7 54 414-468 73-126 (161)
455 2kn4_A Immunoglobulin G-bindin 94.1 0.032 1.1E-06 48.7 3.7 35 180-219 2-36 (158)
456 1nzn_A CGI-135 protein, fissio 94.0 0.24 8.3E-06 40.3 8.2 83 347-430 17-103 (126)
457 4h7y_A Dual specificity protei 93.8 1.1 3.7E-05 37.6 11.7 102 295-398 12-126 (161)
458 4gns_B Protein CSD3, chitin bi 93.4 0.29 1E-05 53.9 10.3 130 298-428 250-398 (754)
459 2l08_A Regulator of nonsense t 92.8 0.19 6.4E-06 38.4 5.3 68 153-222 11-79 (97)
460 4b4t_P 26S proteasome regulato 91.7 14 0.00046 38.3 21.1 93 581-673 142-245 (445)
461 4b4t_P 26S proteasome regulato 91.6 13 0.00044 38.4 19.6 94 440-533 141-245 (445)
462 3txn_A 26S proteasome regulato 90.9 14 0.00049 37.1 23.8 222 511-746 104-344 (394)
463 1y8m_A FIS1; mitochondria, unk 90.8 5.1 0.00017 33.2 12.1 71 678-750 36-109 (144)
464 2ff4_A Probable regulatory pro 90.6 1.1 3.6E-05 45.8 10.1 70 684-754 174-248 (388)
465 4fhn_B Nucleoporin NUP120; pro 90.5 2.6 8.8E-05 50.0 14.6 195 333-534 814-1049(1139)
466 2wpv_A GET4, UPF0363 protein Y 90.4 13 0.00046 35.8 19.0 20 725-744 197-216 (312)
467 3ffl_A Anaphase-promoting comp 90.3 1.2 4E-05 38.2 8.2 115 302-429 26-150 (167)
468 3o48_A Mitochondria fission 1 90.2 2.7 9.1E-05 34.4 9.9 71 678-750 37-110 (134)
469 4fhn_B Nucleoporin NUP120; pro 90.1 5.9 0.0002 46.9 17.2 186 581-773 817-1042(1139)
470 2i2y_A Fusion protein consists 89.7 0.13 4.6E-06 44.2 2.1 42 191-234 10-51 (150)
471 3txn_A 26S proteasome regulato 89.3 19 0.00067 36.1 22.6 168 546-717 104-290 (394)
472 1v54_E Cytochrome C oxidase po 87.8 5 0.00017 30.8 9.1 47 662-708 26-72 (109)
473 3o48_A Mitochondria fission 1 86.4 7.9 0.00027 31.6 10.3 67 364-430 38-107 (134)
474 1v54_E Cytochrome C oxidase po 86.4 1.7 5.8E-05 33.3 5.9 76 684-760 11-88 (109)
475 3ffl_A Anaphase-promoting comp 85.6 5.4 0.00018 34.1 9.4 24 404-427 66-89 (167)
476 2ff4_A Probable regulatory pro 85.6 5.8 0.0002 40.2 11.7 69 614-683 174-247 (388)
477 3lpz_A GET4 (YOR164C homolog); 85.5 28 0.00096 33.9 23.0 167 473-673 37-214 (336)
478 2y69_E Cytochrome C oxidase su 84.4 7.8 0.00027 31.5 9.1 47 662-708 69-115 (152)
479 2wpv_A GET4, UPF0363 protein Y 84.0 32 0.0011 33.2 21.2 25 505-529 133-157 (312)
480 1y8m_A FIS1; mitochondria, unk 83.9 17 0.00059 30.1 12.5 67 364-430 37-106 (144)
481 3lpz_A GET4 (YOR164C homolog); 83.4 35 0.0012 33.2 22.4 25 505-529 135-159 (336)
482 4b4t_R RPN7, 26S proteasome re 81.5 11 0.00038 38.7 12.0 60 299-358 134-195 (429)
483 4b4t_R RPN7, 26S proteasome re 81.0 12 0.00042 38.4 12.0 62 333-394 133-196 (429)
484 1zbp_A Hypothetical protein VP 79.6 39 0.0013 31.6 13.4 58 339-397 5-62 (273)
485 1qsa_A Protein (soluble lytic 77.6 82 0.0028 33.9 32.7 396 303-741 13-438 (618)
486 2y69_E Cytochrome C oxidase su 76.2 20 0.00068 29.3 8.9 60 699-759 71-130 (152)
487 1zbp_A Hypothetical protein VP 75.9 11 0.00038 35.2 8.7 114 654-776 5-125 (273)
488 3esl_A Checkpoint serine/threo 74.3 20 0.0007 31.7 9.5 56 344-399 92-148 (202)
489 2p58_C Putative type III secre 73.8 16 0.00055 27.9 7.3 79 310-396 21-99 (116)
490 2h8h_A Proto-oncogene tyrosine 72.3 0.76 2.6E-05 49.3 0.0 13 163-175 155-167 (535)
491 2uwj_G Type III export protein 70.4 16 0.00053 27.9 6.6 79 310-396 20-98 (115)
492 2h8h_A Proto-oncogene tyrosine 68.9 1 3.4E-05 48.4 0.0 6 201-206 222-227 (535)
493 2qx5_A Nucleoporin NIC96; mRNA 68.8 1.3E+02 0.0046 32.5 20.9 346 336-742 157-564 (661)
494 3eiq_C Programmed cell death p 67.7 98 0.0034 30.5 14.3 228 475-709 58-320 (358)
495 3ltm_A Alpha-REP4; protein eng 67.3 68 0.0023 28.5 16.7 202 265-486 2-203 (211)
496 3d45_A Poly(A)-specific ribonu 67.2 11 0.00038 39.5 7.5 55 150-214 439-493 (507)
497 2g0c_A ATP-dependent RNA helic 64.5 18 0.00062 26.1 6.2 68 153-232 2-75 (76)
498 3se6_A Endoplasmic reticulum a 60.7 2.3E+02 0.008 32.4 21.6 253 276-534 635-919 (967)
499 1jvr_A HTLV-II MA, MA, human T 60.4 24 0.00082 27.2 6.0 45 32-76 91-135 (137)
500 2wvi_A Mitotic checkpoint seri 60.4 49 0.0017 28.3 8.8 83 312-399 46-129 (164)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-40 Score=374.40 Aligned_cols=471 Identities=11% Similarity=0.028 Sum_probs=308.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|+.+|+++... ..+..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 35677899999999999999999999999865 568899999999999999999999999998653 56899999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC---------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH---------------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI 438 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 438 (779)
.+|.+.|++++|+++|+++.... ...+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 99999999999999999633221 12257899999999999999999999999999875 335555
Q ss_pred HHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 439 YHMMMDGYTIIGNEEKCLI--V-FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLING 515 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~--~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 515 (779)
+..+...+...+..+.+.. + +..+...+......+|+.++..|.+.|++++|.++|+++.+. ..+..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 5555544332222221111 1 233333222223344455555666666666666666665543 3456666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHH
Q 004006 516 FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595 (779)
Q Consensus 516 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 595 (779)
|.+.|++++|+.+|+++.+.+.. +..++..++.+|.+.|++++|..+++++...... +..++..++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHH
Confidence 66666666666666666654433 4455666666666666666666666666544332 455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 675 (779)
.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|+++|+++.+.
T Consensus 393 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666554332 45566666666666666666666666666543 335556666666666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 676 GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ----KIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 676 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (779)
. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++++++.+.+ ..
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 3 335566666666666666666666666666543 33444 4566666666666666666666666666542 22
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 750 DVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 750 d~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+..+|..++.+|...|++++|.++|+++
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666666666666666666666553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-39 Score=363.03 Aligned_cols=476 Identities=11% Similarity=0.046 Sum_probs=407.1
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
|.+.|++ +.|...|++++..+| +..++..++.+|.+.|++++|+.+|+++...
T Consensus 94 ~~~~g~~---------~~A~~~~~~~~~~~p----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 146 (597)
T 2xpi_A 94 ALMQQQY---------KCAAFVGEKVLDITG----------------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-- 146 (597)
T ss_dssp HHHTTCH---------HHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--
T ss_pred HHHccCc---------hHHHHHHHHHHhhCC----------------CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--
Confidence 7778888 999999999987665 4567788999999999999999999998654
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc---------------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE---------------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (779)
.++..+++.++.+|.+.|++++|+++|+++... |...+..+|+.++.+|.+.|++++|+++|+++
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 568899999999999999999999999954322 22345889999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHH--H-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004006 393 KERHATLNAIIYGNIIYAQCQTRNMERAEA--L-VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP 469 (779)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 469 (779)
.+.++. +...+..++..+...+..+.+.. + +..+...+......+|+.++..|.+.|++++|+++|+++.+. .+
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 988654 66677777666554433332221 1 455554444444556777788999999999999999998875 46
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..++..++.+|.+.|++++|..+|+++.+... .+..+|+.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHH
Confidence 89999999999999999999999999999865 33778899999999999999999999999987644 37889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 550 AFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEK 629 (779)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 629 (779)
+|.+.|++++|.++|+++...... +..+|..++.+|.+.|++++|+++|+++.+.+.. +..+|+.++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999987554 6779999999999999999999999999987653 78899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChHHHHHH
Q 004006 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GLELD--VFTYEALLKACCKSGRMQSALAV 703 (779)
Q Consensus 630 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 703 (779)
|+++|+++.+.. ..+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999765 457899999999999999999999999999876 65677 78999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004006 704 TKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP-DVHTYTSFINAC 761 (779)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~a~ 761 (779)
++++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+. .| +...+..+..+|
T Consensus 539 ~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 539 LNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99998876 668999999999999999999999999999985 44 456666666554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=4e-28 Score=256.39 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=76.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
...+.+.|++++|+..|+.+.+... .+...+..+...+...|++++|..+++..++.. +.+..+|..++..|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4445555555555555555555421 133344444455555555555555555555442 22455555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
++|+..|+++.+..+. +..+|..++.++.+.|++++|++.|+++.+.+ +.+...+..+...+...|++++|++.|+++
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555554322 34445555555555555555555555554432 222333333444444444444444444444
Q ss_pred HH
Q 004006 463 KE 464 (779)
Q Consensus 463 ~~ 464 (779)
.+
T Consensus 162 l~ 163 (388)
T 1w3b_A 162 IE 163 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=5.4e-28 Score=255.40 Aligned_cols=384 Identities=14% Similarity=0.047 Sum_probs=341.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (779)
+...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|..+++.+.+..+. +..+|..++.+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 4566778999999999999998874 336778888999999999999999999999987544 88899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++|++.|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.... +...+..+...+...|++++|.++|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999874 456778999999999999999999999999986432 456778889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc
Q 004006 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS 576 (779)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 576 (779)
+.+.. +.+..+|..+...|...|++++|+..|+++.+.+.. +...|..+...+...|++++|+..|+++....+. +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 98864 336789999999999999999999999999987654 6788999999999999999999999999987655 67
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 577 RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY 656 (779)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 656 (779)
.++..+..+|.+.|++++|+..|+++.+.... +..+|..+...+.+.|++++|+.+|+++++.. +.+..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 78889999999999999999999999987654 67889999999999999999999999999874 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 657 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
...|++++|..+++++++.. +.+..++..++.+|.+.|++++|...++++.+.. +.+...|..+...+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 99999999999999999874 5578899999999999999999999999999865 6678899999999888764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.4e-28 Score=263.38 Aligned_cols=203 Identities=16% Similarity=0.252 Sum_probs=134.7
Q ss_pred HHHHHHHHcCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHH
Q 004006 562 HIVKEMQKERHRPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ---------MEKAI 631 (779)
Q Consensus 562 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~A~ 631 (779)
.+.+++.+.+.... ...++.+|++|++.|++++|+++|++|.+.|+.||..+||.||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 33444444443322 223555666666666666666666666666666666666666666655433 56677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 632 EILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 632 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 712 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777766653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.6e-27 Score=252.44 Aligned_cols=204 Identities=14% Similarity=0.181 Sum_probs=129.5
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC---------HHH
Q 004006 315 ARQTFENMRARGIEPTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN---------AEA 384 (779)
Q Consensus 315 A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~---------~~~ 384 (779)
+..+.+++.+++..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455666666555443 35778888888888888888888888888888888888888888877654 455
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
|.++|++|.+.|..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 465 CGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (779)
Q Consensus 465 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (779)
.|+.||..+|+.||.+|++.|+.++|.++|++|++.+..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666665543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-24 Score=239.82 Aligned_cols=440 Identities=10% Similarity=-0.058 Sum_probs=309.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+...|.+.|++++|+..|+++.+.+ |+..+|..+..+|.+.|++++|+..|+++++.+. .+..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3456778899999999999999999999874 6899999999999999999999999999998753 367899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHhcCCH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM---DGYTIIGNE 452 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~ 452 (779)
|.+.|++++|+..|+++...+.. +......++..+........+.+.+..+...+..++...+.... .........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999988643 44444455554444433344443333322221111111000000 000011111
Q ss_pred HHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 004006 453 EKCLIVFERLKEC------GFSPSIISYGCLINLYTK---IGKVSKALEVSKVMKS-----SGI--------KHNMKTYS 510 (779)
Q Consensus 453 ~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~~~~~~~ 510 (779)
..+...+...... .-..+...+..+...+.. .|++++|+.+|+++.+ ... ..+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111100000 001123344444444444 7888888888888877 311 12345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 004006 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (779)
.+...|...|++++|..+|+++.+.... ...+..+..++...|++++|+..++++...... +...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 7788888888888888888888876544 777888888888888888888888888877554 5667778888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 591 EMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 670 (779)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 670 (779)
++++|+..|+++.+.... +...+..+...|...|++++|+.+++++.+.. +.+...+..+...|...|++++|..+++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888876544 56778888888888888999988888887653 3456778888888888899999998888
Q ss_pred HHHHcCCC-CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 671 KLRNEGLE-LD----VFTYEALLKACCK---SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 671 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
++.+.... ++ ...+..++.+|.. .|++++|...++++.+.. +.+...+..++.+|.+.|++++|.++++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88765321 11 3477888888888 888999999998888765 567778888888899999999999999988
Q ss_pred HHc
Q 004006 743 KQE 745 (779)
Q Consensus 743 ~~~ 745 (779)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-24 Score=238.24 Aligned_cols=436 Identities=9% Similarity=-0.040 Sum_probs=328.2
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...+..+...+.+.|++++|+..|+++++.+ |+..+|..++.+|.+.|++++|+..|+++.+.++. +..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 3567777888999999999999999999875 68999999999999999999999999999988654 77899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004006 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 490 (779)
|.+.|++++|+..|+++.+.+ +.+......++..+........+.+.+..+...+..++...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999876 3444555555555554444444444443332222111111111111111111111111
Q ss_pred HHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----C--CC------CCCHHHHH
Q 004006 491 LEVSKVMKSSGI---------KHNMKTYSMLINGFLK---LKDWANVFAVFEDVMR-----D--GL------KPDVVLYN 545 (779)
Q Consensus 491 ~~~~~~m~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--g~------~~~~~~~~ 545 (779)
..+...+..... ..+...+..+...+.. .|++++|+.+|+++.+ . .. ..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1124455555555554 8999999999999988 3 11 11356788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004006 546 NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKR 625 (779)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 625 (779)
.+...+...|++++|..+|+++...... ...+..+...|...|++++|+..++++.+.... +...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 8899999999999999999999988655 778888999999999999999999999987544 6778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004006 626 QMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTK 705 (779)
Q Consensus 626 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (779)
++++|+..|+++.+.. +.+...+..+...|...|++++|+.+++++.+.. +.+..++..++.+|...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999875 4466788999999999999999999999999875 4467789999999999999999999999
Q ss_pred HHHhCCCCCC------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 706 EMSAQKIPRN------TFVYNILIDGWAR---RGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 706 ~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
++.+.. +.+ ...|..++.++.+ .|++++|.++++++.+.. ..+..++..+..+|...|++++|.++|++
T Consensus 397 ~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 397 LAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 987643 122 3488999999999 999999999999999853 33577889999999999999999999986
Q ss_pred h
Q 004006 777 A 777 (779)
Q Consensus 777 m 777 (779)
.
T Consensus 475 a 475 (514)
T 2gw1_A 475 S 475 (514)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.2e-23 Score=224.84 Aligned_cols=386 Identities=10% Similarity=0.070 Sum_probs=222.3
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..++..|.+.|++++|+.+|+++++.. +.+..+|..++.+|...|++++|+..|+++.+.+.. +..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 44455555566666666666666666655542 224555555666666666666666666665555333 4555555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPI---DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
+|.+.|++++|+++|+++.+.+ +.+. ..+..++..+.. ..+..+...+.+.|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 5555555555555555555442 1112 222322222111 112233445667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004006 487 VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKE 566 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (779)
+++|+.+|+++.+.. +.+...+..+..+|.+.|++++|+.+|+++.+.... +..+|..++.+|...|++++|+..|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776643 235666777777777777777777777777665332 566677777777777777777777777
Q ss_pred HHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 004006 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN- 645 (779)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~- 645 (779)
+...... +...+..+.. +. ....+..++..|.+.|++++|+.+|+++++.. |+
T Consensus 237 ~~~~~p~-~~~~~~~~~~-----------------~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~ 290 (450)
T 2y4t_A 237 CLKLDQD-HKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSI 290 (450)
T ss_dssp HHHHCTT-CHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSS
T ss_pred HHHhCCC-hHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Ccc
Confidence 7655332 2222222100 00 00112223556666677777777777766542 33
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004006 646 ----EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721 (779)
Q Consensus 646 ----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (779)
...|..+..++.+.|++++|+.+++++++.. +.+..+|..++.+|...|++++|...++++.+.. +.+...+..
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 368 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREG 368 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 3356666667777777777777777776653 3456677777777777777777777777776653 444555555
Q ss_pred HHHH------------HHhcC-----CHHHHHHHHHHH-HHcCCCCC-----------HHHHHHHHHHHHhcCCcchHHH
Q 004006 722 LIDG------------WARRG-----DVWEAADLMQQM-KQEGVQPD-----------VHTYTSFINACKCSKSNQRNGR 772 (779)
Q Consensus 722 l~~~------------~~~~g-----~~~~A~~~~~~m-~~~g~~pd-----------~~~~~~l~~a~~~~g~~~~a~~ 772 (779)
+..+ |...| +.+++.+.++++ ++ ..|| ...+..+..+|...|+.++..+
T Consensus 369 l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 5532 33334 566778888763 33 2332 2367788889999988887654
Q ss_pred h
Q 004006 773 S 773 (779)
Q Consensus 773 ~ 773 (779)
+
T Consensus 447 y 447 (450)
T 2y4t_A 447 F 447 (450)
T ss_dssp -
T ss_pred c
Confidence 3
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1e-23 Score=233.30 Aligned_cols=434 Identities=10% Similarity=0.037 Sum_probs=317.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+...+.+.|++++|+..|+++++... .+..+|..+..+|.+.|++++|++.|+++++.+. .+..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 45677889999999999999999999998753 3788999999999999999999999999998753 378899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG--IDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
|...|++++|+..|+ ....... .....+..+...+...+|...++++.... ...........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGD----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 4333222 22223445556667788999998886641 0111112234445556666666
Q ss_pred HHHHHHHHHHHCCCCCCHh-hHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSII-SYGCLINLYT--------KIGKVSKALEVSKVMKSSGIKHN-------MKTYSMLINGFL 517 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~ll~~~~ 517 (779)
.+...+...... .+... ....+...+. ..|++++|..+++++.+... .+ ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHH
Confidence 655544433221 11111 2222222221 22578888888888877532 12 234666667788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004006 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE 597 (779)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 597 (779)
..|++++|...|+++.+.. |+...+..+...+...|++++|+..|+++...... +..++..+...+...|++++|+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 8899999999999888864 44778888888888999999999999988887654 66778888888899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 004006 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG- 676 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 676 (779)
.|+++.+.... +...|..+...|...|++++|+.+|+++.+.. +.+...+..+...|...|++++|...|+++++..
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99988876544 56778888888999999999999999888764 4456788888888999999999999999887642
Q ss_pred ----CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 677 ----LELDVFTYEALLKACCKS----------GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 677 ----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
.......+..+..++... |++++|...++++.+.. +.+...+..++.+|.+.|++++|.++|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 112223345556677777 89999999999888765 567788889999999999999999999998
Q ss_pred HHc
Q 004006 743 KQE 745 (779)
Q Consensus 743 ~~~ 745 (779)
.+.
T Consensus 489 l~~ 491 (537)
T 3fp2_A 489 AIL 491 (537)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=5.7e-23 Score=221.63 Aligned_cols=317 Identities=10% Similarity=0.070 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 004006 265 WHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG 344 (779)
Q Consensus 265 ~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (779)
.+...|.+++..+|. +...+..++..|.+.|++++|+.+|+++.+.. ..+..+|..+..+|...
T Consensus 10 ~~~~~~~~~~~~~p~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~ 73 (450)
T 2y4t_A 10 GVDLGTENLYFQSMA---------------DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM 73 (450)
T ss_dssp -------------CH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccHH---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHC
Confidence 445555666666664 56778889999999999999999999999874 34788999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh---hhHHHHH------------H
Q 004006 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA---IIYGNII------------Y 409 (779)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~------------~ 409 (779)
|++++|+..|+++++.+. .+..++..++.+|.+.|++++|+.+|+++.+.... +. ..+..++ .
T Consensus 74 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 151 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQAL 151 (450)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999753 36889999999999999999999999999987543 44 5555553 3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
.+.+.|++++|+++|+++.+.. +.+..++..++.+|...|++++|+.+|+++.+... .+..+|..++.+|...|++++
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 3666666677776666666653 34555666666666666666666666666655421 245566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 004006 490 ALEVSKVMKSSGIKHNMKTYSML------------INGFLKLKDWANVFAVFEDVMRDGLKPD----VVLYNNIIRAFCG 553 (779)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~ 553 (779)
|+..|+++.+.. +.+...+..+ ...|.+.|++++|+.+|+++.+.... + ...+..+..++.+
T Consensus 230 A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHH
Confidence 666666665542 1123333332 44444445555555555554443211 1 1234444444444
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 554 MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 554 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
.|++++|+..++++...... +...|..+..+|...|++++|...|+++.+
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444443222 334444444444444444444444444444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.5e-22 Score=223.93 Aligned_cols=431 Identities=9% Similarity=-0.025 Sum_probs=331.4
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...|..+...+.+.|++++|++.|+++++... .+..+|..++.+|.+.|++++|++.|+++.+.++. +..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 35677888899999999999999999998753 47899999999999999999999999999998655 78899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHHcCCHH
Q 004006 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF--SPSIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~ 488 (779)
|...|++++|++.|+ ..... ++ .....+..+...+....|+..++++..... ..........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 33322 21 122234455556667888999988865310 111122234455566677777
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHH
Q 004006 489 KALEVSKVMKSSGIKHNMK-TYSMLINGFLK--------LKDWANVFAVFEDVMRDGLKPD-------VVLYNNIIRAFC 552 (779)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~g~~~~-------~~~~~~l~~~~~ 552 (779)
.+...+...... .+... ....+...+.. .+++++|+.+|+++.+.... + ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 766655443322 22222 33333333322 25889999999999876443 3 235667778889
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 553 GMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIE 632 (779)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 632 (779)
..|++++|...|+++...... ...+..+...|...|++++|+..|+++.+.... +..+|..+...+...|++++|+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999987544 677888889999999999999999999987654 78899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-
Q 004006 633 ILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK- 711 (779)
Q Consensus 633 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 711 (779)
.|+++.+.. +.+...|..+..+|...|++++|..+++++.+.. +.+..++..+..+|...|++++|...++++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998765 3456789999999999999999999999999885 5567789999999999999999999999987532
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 712 ----IPRNTFVYNILIDGWARR----------GDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 712 ----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
.......+..+..++.+. |++++|+.+++++.+.. ..+...+..+..+|...|+.++|.++|++.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 112233455667788888 99999999999999853 335788999999999999999999999864
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.8e-18 Score=187.95 Aligned_cols=364 Identities=13% Similarity=0.099 Sum_probs=264.4
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHH
Q 004006 315 ARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAAD 386 (779)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 386 (779)
++..+....+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 456666666654 66777778877777 788888888888887764 66778888888887 78888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIV 458 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 458 (779)
.+|++..+.+ +...+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|+++
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887764 66777778888877 778888888888887765 56677777777776 7788888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004006 459 FERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFE 530 (779)
Q Consensus 459 ~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 530 (779)
|++..+.| +...+..|..+|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88887764 56777777777777 778888888888877754 55667777777765 678888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHH
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCG----MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA-----GEMKRALEIFDM 601 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~ 601 (779)
+..+.| +...+..+..+|.. .++.++|+.+|++..+.+ +...+..|...|... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 777653 45566666677766 677778888887777654 344555666666665 777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004006 602 MRRSGCIPTVHTFNALILGLVEKR---QMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFTKLRN 674 (779)
Q Consensus 602 ~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 674 (779)
..+.+ +...+..|...|...| ++++|+.+|++..+.+ +...+..|...|.. .+++++|+.+|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 77654 4556666666666655 6677777777777653 56666777777776 6777777777777777
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 004006 675 EGLELDVFTYEALLKACCK----SGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (779)
.+ +...+..|..+|.. .+++++|...|++..+.+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 45666777777776 677777777777777654
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=4.4e-18 Score=184.92 Aligned_cols=353 Identities=14% Similarity=0.085 Sum_probs=263.5
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCC
Q 004006 294 PSRREFGLMVNYYAR----RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMS 365 (779)
Q Consensus 294 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~ 365 (779)
-+...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+++|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366777777777777 778888888888887764 56777777777777 778888888888887765 6
Q ss_pred HhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChh
Q 004006 366 LVTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPID 437 (779)
Q Consensus 366 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 437 (779)
...+..|..+|.. .+++++|+.+|++..+.+ +...+..|..+|.. .+++++|++.|++..+.+ +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777777777777 678888888888887764 56777777777776 678888888888887764 567
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 438 IYHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTY 509 (779)
Q Consensus 438 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (779)
.+..+...|.. .++.++|+++|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 77777777777 788888888888877764 55667777777776 678888888888877654 45666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCCCcccHH
Q 004006 510 SMLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM-----GNMDRAIHIVKEMQKERHRPTSRTFM 580 (779)
Q Consensus 510 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~ 580 (779)
..+...|.. .++.++|+.+|++..+.| +...+..+..+|... ++.++|+.+|++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 667777776 778888888888877653 456666777777776 78888888888877764 345566
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 581 PIIHGFARAG---EMKRALEIFDMMRRSGCIPTVHTFNALILGLVE----KRQMEKAIEILDEMTLAGISPNEHTYTTIM 653 (779)
Q Consensus 581 ~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 653 (779)
.+...|.+.| ++++|+..|++..+.+ +...+..|...|.. .+++++|+..|++..+.+ +...+..|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666666655 6778888888887753 56777777777777 678888888888877754 466777777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcC
Q 004006 654 HGYAS----LGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 654 ~~~~~----~g~~~~a~~~~~~~~~~~ 676 (779)
..|.. .++.++|...|++..+.+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 77776 778888888888888765
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=2.6e-19 Score=186.36 Aligned_cols=332 Identities=10% Similarity=0.054 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...+.+.|++++|+..|+++.+... .+..++..+..++...|++++|+..|+++++... -+...+..++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 45677788899999999999999999988743 3677888899999999999999999999988643 367888999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCC--CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHAT--LNAIIYGNI------------IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 441 (779)
|...|++++|+..|+++.+.... .+...+..+ +..+...|++++|+++|+++.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999999876431 144444444 344455555555555555555442 233444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (779)
+...+...|++++|+..++++.+... .+..++..+..+|...|++++|...|+++.+.. +.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~-------- 229 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK-------- 229 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH--------
Confidence 55555555555555555555544321 134444445555555555555555555444432 11111111110
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhcCCHHHHHH
Q 004006 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRALE 597 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 597 (779)
.+. .......+...+.+.|++++|...++++...... +. ..+..+..++.+.|++++|+.
T Consensus 230 ---------~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 230 ---------QVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp ---------HHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------HHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 000 0001112355567777777777777777765433 22 123446667777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 658 (779)
.++++.+.... +...|..+...|...|++++|...|+++++.. +.+...+..+..+...
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 88777775432 56777777777888888888888888777653 3345555555555443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=4.2e-19 Score=184.79 Aligned_cols=343 Identities=11% Similarity=0.020 Sum_probs=186.2
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (779)
|...+..++..+...|++++|+..|+++.+..+. +..++..++.+|...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4556777777777888888888888877776543 66777777777777777777777777777663 335566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 445 GYTIIGNEEKCLIVFERLKECGFS--PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDW 522 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 522 (779)
.|...|++++|+..|+++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777664210 02222222211100 01122234455556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMM 602 (779)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 602 (779)
++|+.+|+++.+.... +...+..+..++...|++++|+..++++...... +...+..+...+...|++++|...|+++
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665554332 4455555555666666666666666655554333 4445555555555556666666555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 004006 603 RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV- 681 (779)
Q Consensus 603 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 681 (779)
.+.... +...+..+... . .......+...+.+.|++++|..+++++.+.... +.
T Consensus 215 ~~~~~~-~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 269 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAE 269 (359)
T ss_dssp HHHCTT-CHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HhhCcc-chHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chH
Confidence 544322 22222111000 0 0001112234455555555555555555554311 22
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004006 682 ---FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSF 757 (779)
Q Consensus 682 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l 757 (779)
..+..+..+|...|++++|..+++++.+.. +.+...|..++.+|.+.|++++|.+.++++.+. .|+ ...+..+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 123345555566666666666666655543 345555666666666666666666666666553 333 3344444
Q ss_pred HHHHH
Q 004006 758 INACK 762 (779)
Q Consensus 758 ~~a~~ 762 (779)
..+..
T Consensus 347 ~~~~~ 351 (359)
T 3ieg_A 347 EKAQR 351 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=3.1e-17 Score=180.24 Aligned_cols=420 Identities=10% Similarity=0.052 Sum_probs=267.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..++. +.+.|++++|+.+|+++++.. ..+...|..++..+.+.|++++|.++|+++++.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6667777776 366777777777777777653 3355677777777777777777777777777652 46666666664
Q ss_pred HH-HccCCHHHHHH----HHHHHHHc-CCC-CChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCChhh
Q 004006 375 GF-AKMGNAEAADH----WFEEAKER-HAT-LNAIIYGNIIYAQCQ---------TRNMERAEALVRDMEEEGIDAPIDI 438 (779)
Q Consensus 375 ~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~ 438 (779)
.. ...|++++|.+ +|+++... |.. .+...|...+....+ .|++++|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34566655544 66655542 222 244566666555443 5666667777766665210000112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH------HCC---CCCC----
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMK------SSG---IKHN---- 505 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~---~~~~---- 505 (779)
|..........|. .+...++. .+.++++.|..+++.+. +.. +.|+
T Consensus 168 ~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2211111111110 00011110 12344566666655421 111 2332
Q ss_pred ----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------CCCHH-------H
Q 004006 506 ----MKTYSMLINGFLKL----KDW----ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG-------MGNMD-------R 559 (779)
Q Consensus 506 ----~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~g~~~-------~ 559 (779)
...|...+...... ++. +.+..+|++++..... +...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 23454444333221 222 4677888888776333 67788888887765 78876 8
Q ss_pred HHHHHHHHHH-cCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 560 AIHIVKEMQK-ERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT-VHTFNALILGLVEKRQMEKAIEILDEM 637 (779)
Q Consensus 560 A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (779)
|..+|++... ..+. +...|..++..+.+.|++++|..+|+++++.... + ...|..++..+.+.|++++|..+|++.
T Consensus 305 A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8999998886 3332 5677888888888899999999999999886432 3 357888888888889999999999998
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCC-
Q 004006 638 TLAGISPNEHTYTTIMHG-YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK-IPR- 714 (779)
Q Consensus 638 ~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~- 714 (779)
++.. +.+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++...+ ..|
T Consensus 383 l~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred Hhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 8753 2233333332222 345889999999999988764 4578888899999989999999999999988763 122
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 715 -NTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 715 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
....|...+......|+.+.+.++++++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2447888888888899999999999988764
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2.4e-16 Score=177.89 Aligned_cols=422 Identities=12% Similarity=0.087 Sum_probs=318.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
.-++......++.|+..|.+.+|+++++++.-.+- .-+....+.++....+. +..+..+..+++... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 34667778889999999999999999999984421 12345667777776666 566666666655421 1 34
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
.++..+...|.+++|..+|++... .......+ +-..+++++|.++.++. .+..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 488888999999999999999631 22222222 23778999999998865 24778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 451 NEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (779)
Q Consensus 451 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (779)
++++|+..|.+. -|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999764 377888899999999999999999999888754 33333445889999999988644432
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 610 (779)
+ .++...|..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++.. +
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 235667778999999999999999999985 378999999999999999999999872 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
..+|..+..+|...|++..|..+...+ ..+...+..++..|.+.|.+++|+.+++..+... +.....|..|...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 789999999999999999998876643 3456677899999999999999999999888765 5566677777777
Q ss_pred HHHc--CChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHcCCCC
Q 004006 691 CCKS--GRMQSALAVTKEMSAQKIPR------NTFVYNILIDGWARRGDVWEAADLM-------------QQMKQEGVQP 749 (779)
Q Consensus 691 ~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~m~~~g~~p 749 (779)
|++. +++.++.++|..-.. +++ +...|.-++-.|.+.|+++.|...+ +..+. -..
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~ 1399 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVA 1399 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccc
Confidence 7764 456666666664332 233 5677899999999999999988322 22221 234
Q ss_pred CHHHHHHHHHHHHhcC---------------CcchHHHhHhh
Q 004006 750 DVHTYTSFINACKCSK---------------SNQRNGRSWSE 776 (779)
Q Consensus 750 d~~~~~~l~~a~~~~g---------------~~~~a~~~~~~ 776 (779)
|...|...+.-|...+ +.+++.++++.
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 6667777777666666 77777777663
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.6e-18 Score=178.06 Aligned_cols=269 Identities=9% Similarity=0.022 Sum_probs=124.3
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..++..+...|++++|+++|+++++... .+...+..++..+.+.|++++|+.+|+++.+.... +..+|..++.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 334444455555555555555555555554431 23444444555555555555555555555554322 4445555555
Q ss_pred HHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 004006 410 AQCQTR-NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 410 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 488 (779)
+|...| ++++|++.|+++.+.+ +.+...|..+...|...|++++|+..|+++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 5555555555555442 223444455555555555555555555555443211 2333444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhCCCHHHH
Q 004006 489 KALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG--------LKPDVVLYNNIIRAFCGMGNMDRA 560 (779)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--------~~~~~~~~~~l~~~~~~~g~~~~A 560 (779)
+|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. ...+..++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555554432 2234444444455555555555555554444321 011223444444444444444444
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 561 IHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
+..|+++...... +...+..+...|.+.|++++|...|+++.+
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4444444443322 333334444444444444444444444433
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2e-18 Score=177.40 Aligned_cols=285 Identities=10% Similarity=-0.000 Sum_probs=137.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 435 PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (779)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (779)
+...+..++..+...|++++|+.+|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 334444445555555555555555555544321 133344444455555555555555555554432 123444444555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 004006 515 GFLKLK-DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMK 593 (779)
Q Consensus 515 ~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (779)
.|...| ++++|...|+++.+.... +...|..+..++...|++++|+..|+++...... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 555555555555543322 3344555555555555555555555555544332 3334444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 004006 594 RALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG--------ISPNEHTYTTIMHGYASLGDTGKA 665 (779)
Q Consensus 594 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 665 (779)
+|+..++++.+.... +...+..+...+...|++++|+.+++++.+.. ...+..+|..+..+|...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 555555555544322 44555555555555555555555555554321 011223444455555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
+..++++++.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..++
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55555554443 2234444445555555555555555555444433 33444444444444
No 21
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=155.43 Aligned_cols=83 Identities=19% Similarity=0.440 Sum_probs=79.4
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..++++|||||||+++|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..++|++|+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~gr~l~ 92 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD-KVAGHSLGYGFVNYVTAKDAERAINTL--NGLRLQSKTIK 92 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-SSSCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec-CCCCcccccEEEEECCHHHHHHHHHHh--CCCEECCEEEE
Confidence 456679999999999999999999999999999999999 889999999999999999999999999 99999999999
Q ss_pred EEecCC
Q 004006 228 VKLDDG 233 (779)
Q Consensus 228 v~~~~~ 233 (779)
|++|+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999976
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=4e-17 Score=179.30 Aligned_cols=402 Identities=11% Similarity=0.082 Sum_probs=273.8
Q ss_pred cHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-HccCChHHHHH---
Q 004006 280 NWQAVVSAFERIK---KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAY-AVGRDMEEALS--- 352 (779)
Q Consensus 280 ~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~--- 352 (779)
....+...|++.- +-+...|..++..+.+.|++++|+.+|+++++. .|+...|...+... ...|++++|.+
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 3455555666542 346778999999999999999999999999987 46888888887644 45678877765
Q ss_pred -HHHHHHHc-CCCC-CHhHHHHHHHHHHc---------cCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHH
Q 004006 353 -CVRKMKEE-GIEM-SLVTYSIIVGGFAK---------MGNAEAADHWFEEAKERHATLN-AIIYGNIIYAQCQTRNMER 419 (779)
Q Consensus 353 -~~~~m~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 419 (779)
+|++.+.. |..+ +...|...+....+ .|++++|..+|+++++. +..+ ...|..........|. ..
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~-~~ 182 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINI-HL 182 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCH-HH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhch-hH
Confidence 77776653 4433 56788888877665 78999999999999883 2111 1233322221111110 00
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------HCC---CCCC--------HhhHHHHHHHHH
Q 004006 420 AEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK------ECG---FSPS--------IISYGCLINLYT 482 (779)
Q Consensus 420 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~li~~~~ 482 (779)
+.. ++. ...+++..|..++..+. +.. +.|+ ...|...+....
T Consensus 183 ~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 183 AKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp HHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred HHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 111 110 12344555655555422 111 1222 234444444332
Q ss_pred Hc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCC
Q 004006 483 KI----GKV----SKALEVSKVMKSSGIKHNMKTYSMLINGFLK-------LKDWA-------NVFAVFEDVMRDGLKPD 540 (779)
Q Consensus 483 ~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~ 540 (779)
.. ++. +++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-..-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 22 222 36777888887753 3467788888877765 68876 88999999886212236
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (779)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 619 (779)
...|..++..+.+.|++++|..+|+++...... + ...|..++..+.+.|++++|+.+|++..+.... +...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHH
Confidence 788888999999999999999999999886433 2 247888888888899999999999999876432 3333333222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHHcC
Q 004006 620 G-LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL-EL--DVFTYEALLKACCKSG 695 (779)
Q Consensus 620 ~-~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g 695 (779)
. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++++..+. .| ....|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999988753 34678888999999999999999999999998742 22 2557888888888899
Q ss_pred ChHHHHHHHHHHHhC
Q 004006 696 RMQSALAVTKEMSAQ 710 (779)
Q Consensus 696 ~~~~A~~~~~~~~~~ 710 (779)
+.+.+..+.+++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=4e-19 Score=185.79 Aligned_cols=332 Identities=12% Similarity=0.019 Sum_probs=183.0
Q ss_pred HHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHCCCC-C--CHhhHHHHHHHHHccCChH
Q 004006 273 AVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ-TFENMRARGIE-P--TLHVYTNLIHAYAVGRDME 348 (779)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~ 348 (779)
.+..+...|..+...|+.+...+.. ++.-.|++++|+. .|++..+.... | +...+..+...+.+.|+++
T Consensus 9 ai~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 9 AIESDVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred hcccCcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 3344455566555555444322221 3445578888888 88876654221 1 3456788888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004006 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (779)
Q Consensus 349 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (779)
+|+.+|+++++.. +.+..++..++.+|.+.|++++|+..|+++.+.... +..++..++.+|...|++++|++.|+++.
T Consensus 82 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 82 NAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998874 337788888999999999999999999998887644 77888888889999999999999998888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 004006 429 EEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH-NMK 507 (779)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~ 507 (779)
+.. +.+...+..+... .. .. . ....+..+...+ ..|++++|+.+|+++.+..... +..
T Consensus 160 ~~~-~~~~~~~~~~~~~-------~~-------~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 160 RYT-PAYAHLVTPAEEG-------AG-------GA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HTS-TTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HhC-cCcHHHHHHHHHH-------hh-------hh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHH
Confidence 864 2222222211000 00 00 0 000111122222 5556666666666555542111 355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 004006 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA 587 (779)
Q Consensus 508 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (779)
++..+...|...|++++|+..|+++.+.... +..++..+..++...|++++|+..|+++...... +...+..+..+|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 5555666666666666666666665554322 4555666666666666666666666666555432 4455566666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 588 RAGEMKRALEIFDMMRRSGCIP----------TVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
+.|++++|...|+++.+..... ...+|..+..+|...|++++|..++++
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6666666666666665432211 156667777777777777777666553
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.7e-18 Score=180.92 Aligned_cols=305 Identities=9% Similarity=-0.004 Sum_probs=173.5
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 446 YTIIGNEEKCLI-VFERLKECGF---SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (779)
Q Consensus 446 ~~~~g~~~~a~~-~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (779)
+...|++++|+. .|++...... ..+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+..+|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344567777777 6665543321 1134567777888888888888888888888764 3466777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDM 601 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 601 (779)
+++|+..|+++.+.... +..++..+..++...|++++|+..|+++...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 88888888888776543 6777888888888888888888888888876543 22222111000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 602 MRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD 680 (779)
Q Consensus 602 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 680 (779)
.. . ....+..+. .+...|++++|+.+|+++.+..... +..++..+...|...|++++|+.+|+++++.. +.+
T Consensus 178 ~~----~-~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 GA----G-LGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hh----c-ccHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 00 0 000111111 2225555666666666555443111 35555566666666666666666666665543 334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------C
Q 004006 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP----------D 750 (779)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p----------d 750 (779)
..++..++.+|...|++++|...++++.+.. +.+...+..++.+|.+.|++++|...++++++..-.. .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 5566666666666666666666666665543 4455566666666666666666666666665431110 1
Q ss_pred HHHHHHHHHHHHhcCCcchHHHhHh
Q 004006 751 VHTYTSFINACKCSKSNQRNGRSWS 775 (779)
Q Consensus 751 ~~~~~~l~~a~~~~g~~~~a~~~~~ 775 (779)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4566666666666666666666554
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=151.78 Aligned_cols=84 Identities=14% Similarity=0.339 Sum_probs=79.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+||++++++++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|++|++.| ||..|+|+.|+|++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d-~~tg~~rG~aFV~f~~~~~A~~Ai~~l--ng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLH-PRTRKHLGLARVLFTSTRGAKETVKNL--HLTSVMGNIIHAQL 82 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEC-CCCCceeeEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
+..+..+
T Consensus 83 a~~~~~~ 89 (110)
T 3s8s_A 83 DIKGQQR 89 (110)
T ss_dssp CSTTHHH
T ss_pred CCCCcHH
Confidence 9766433
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.2e-15 Score=172.21 Aligned_cols=380 Identities=10% Similarity=0.103 Sum_probs=288.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
--...+++|...|.+.+|++++++++-.+- .-+....+.|+.+..+. +..+..++.++.... ....++.+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHH
Confidence 345667778888999999999999884321 12445666677766666 556666665555322 24457888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004006 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 490 (779)
+...|.+++|..+|++... .....+.+ +...+++++|.++.++.. +..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 8899999999999998631 11112222 337888999999988652 577888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004006 491 LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (779)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 570 (779)
++.|.+. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...++ .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999653 377888889999999999999999998877654 23333445888999999888644442 2
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004006 571 RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT 650 (779)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 650 (779)
.++...|..+...|...|++++|..+|..+ ..|..+...|++.|++++|++.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 234556777889999999999999999985 37889999999999999999999876 3568999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR- 729 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 729 (779)
.+..+|...|++..|..+... +..+...+..++..|.+.|.+++|+.+++.....+ +-+...|+-|..+|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 999999999999988887654 23466678899999999999999999999888765 55667788888888775
Q ss_pred -CCHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHhcCCcchHHH
Q 004006 730 -GDVWEAADLMQQMKQEGVQ------PDVHTYTSFINACKCSKSNQRNGR 772 (779)
Q Consensus 730 -g~~~~A~~~~~~m~~~g~~------pd~~~~~~l~~a~~~~g~~~~a~~ 772 (779)
++..++.++|..-.. +. -+...|.-++-.|.+.|++++|..
T Consensus 1329 peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 466677777764432 22 256789999999999999999983
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.8e-18 Score=180.52 Aligned_cols=236 Identities=8% Similarity=-0.066 Sum_probs=153.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...|..+...+.+.|++++|+.+|+++++... .+..+|..++.+|.+.|++++|+..|+++.+.... +..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 345577778888888888888888888887643 36778888888888888888888888888877543 6778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHH
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPI----------DIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PSIISYGCLI 478 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li 478 (779)
+|...|++++|+++|+++.+.. +.+. ..+..+...+...|++++|+.+|+++.+.... .+..++..++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 8888888888888888887653 1111 12233456666677777777777766664321 1455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMD 558 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 558 (779)
.+|.+.|++++|++.|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.... +..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 66667777777777776666543 234566666666666666666666666666654332 4556666666666666666
Q ss_pred HHHHHHHHHHHc
Q 004006 559 RAIHIVKEMQKE 570 (779)
Q Consensus 559 ~A~~~~~~~~~~ 570 (779)
+|...|+++...
T Consensus 299 ~A~~~~~~al~~ 310 (365)
T 4eqf_A 299 EAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666665543
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=146.56 Aligned_cols=79 Identities=18% Similarity=0.392 Sum_probs=74.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCC--eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc----eeeceE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGP--IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV----EFHGRV 225 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~----~~~~~~ 225 (779)
.+|||+|||+++|+++|+++|++||. +.+|++++| +.||++||||||+|.+.++|.+|++.| ||. .++||+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d-~~tg~srG~aFV~f~~~~~A~~Ai~~l--ng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD-KQTQQNRGFAFVQLSSAMDASQLLQIL--QSLHPPLKIDGKT 86 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC-SSSSSCSSEEEEECSSSHHHHHHHHHH--HSSSSCEEETTEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec-CCCCCCceEeEEEECCHHHHHHHHHHh--cCCCCCceECCEE
Confidence 39999999999999999999999995 679999999 999999999999999999999999999 986 589999
Q ss_pred EEEEecCC
Q 004006 226 LTVKLDDG 233 (779)
Q Consensus 226 ~~v~~~~~ 233 (779)
|+|++|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.2e-18 Score=181.91 Aligned_cols=274 Identities=9% Similarity=-0.045 Sum_probs=162.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004006 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFC 552 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 552 (779)
.+..++..+.+.|++++|+.+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.... +..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 35555555556666666666665555542 224555555555555555555555555555554322 3455555555555
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 553 GMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIE 632 (779)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 632 (779)
..|++++|+.+|+++...... +...+..+. .....+..+...+...|++++|+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHH
Confidence 555555555555555543221 111111110 012233445666777777777777
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 633 ILDEMTLAGIS-PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 633 ~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
+|+++++.... .+..++..+...|...|++++|+.+|+++++.. +.+..++..++.+|...|++++|...++++.+..
T Consensus 199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777765311 156677777777777788888888887777764 4467777778888888888888888888777654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ-----------PDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 712 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----------pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
+.+...|..++.+|.+.|++++|..+++++++..-. .+..+|..+..++...|+.+.+.+.+++
T Consensus 278 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 -PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 455777778888888888888888888877753100 1256778888888888888888776653
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.1e-17 Score=175.48 Aligned_cols=384 Identities=10% Similarity=-0.031 Sum_probs=238.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHc--------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE--------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH----- 396 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 396 (779)
....||.|..++...|++++|++.|++.++. .-.....+|+.+..+|...|++++|+..|+++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888888899999999999887542 112246678888888999999999998888876531
Q ss_pred --CCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCC
Q 004006 397 --ATLNAIIYGNIIYAQCQ--TRNMERAEALVRDMEEEGIDAPIDIYHMMMDG---YTIIGNEEKCLIVFERLKECGFSP 469 (779)
Q Consensus 397 --~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~g~~~ 469 (779)
......++..+..++.. .+++++|++.|++..+.+ +.+...+..+..+ +...++.++|++.|++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 01133456655555544 456888888888888764 3445555555544 34456777888888887775322
Q ss_pred CHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004006 470 SIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYN 545 (779)
Q Consensus 470 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 545 (779)
+..++..+...+.. .|++++|.+++++..... ..+..++..+...|...|++++|+..|+++.+.... +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45555555555444 356778888888777654 346677788888888888888888888888776444 556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004006 546 NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKR 625 (779)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 625 (779)
.+..+|...+... .... ...........+.+++|...|++..+.... +...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 6665553221110 0000 000011111223467788888888776543 4556777888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004006 626 QMEKAIEILDEMTLAGISPNEH--TYTTIMH-GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (779)
Q Consensus 626 ~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (779)
++++|+..|++.++....+... .+..+.. .+...|++++|+..|++.++.. ++..... +.+..+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHH
Confidence 9999999999888764332221 2222222 2356788999999999988864 3322221 22344556
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 703 VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (779)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (779)
++++....+ +.+..+|..|+.+|...|++++|++.|++.++.|
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666666554 6677889999999999999999999999998764
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.7e-16 Score=171.93 Aligned_cols=384 Identities=13% Similarity=-0.026 Sum_probs=263.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcC-----
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR--------GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG----- 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----- 361 (779)
....|+.|...|...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++.++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3467899999999999999999999998652 112245689999999999999999999999886521
Q ss_pred -C-CCCHhHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCC
Q 004006 362 -I-EMSLVTYSIIVGGFAKM--GNAEAADHWFEEAKERHATLNAIIYGNIIYAQC---QTRNMERAEALVRDMEEEGIDA 434 (779)
Q Consensus 362 -~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 434 (779)
. .....++..+..++.+. +++++|+..|+++.+..+. +...+..+..++. ..++.++|++.+++..+.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1 12356777777666654 4699999999999998655 6777777766644 5677889999999998875 44
Q ss_pred ChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004006 435 PIDIYHMMMDGYT----IIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYS 510 (779)
Q Consensus 435 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 510 (779)
+..++..+...+. ..|++++|.+++++...... .+..++..+...|...|++++|+..+++..+.. +-+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 5666666665554 45678899999999887643 367788999999999999999999999998864 33567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 004006 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (779)
.+...|...+....+.. ...........+..+.|...|++....... +...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 77766643211111100 000111111223467888889988887655 6778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 591 EMKRALEIFDMMRRSGCIPTV--HTFNALIL-GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFE 667 (779)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 667 (779)
++++|+..|++.++....+.. ..+..+.. .+...|++++|+..|++.++.. |+....... ...+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH---------HHHHHH
Confidence 999999999999886543222 12333332 3457899999999999998763 443322222 334556
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 668 YFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
++++.+... +.+..+|..|+.+|...|++++|.+.+++.++.+
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666766665 5577899999999999999999999999998764
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-20 Score=147.13 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=76.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.+|||+|||+++|+++|+++|++|| .|.+|+|++| +.||+++|||||+|.+.++|.+|++.+ .|+..++||+|+|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d-~~t~~~rg~aFV~F~~~~~A~~Ai~~~-~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRN-KSSGQSRGFAFVEFSHLQDATRWMEAN-QHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSC-SSSCCCSSEEEEECSSHHHHHHHHHTT-TTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHhc-CCCeEECCEEEEEEE
Confidence 5899999999999999999999999 8999999999 899999999999999999999999875 145679999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
+.++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 988753
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.6e-18 Score=176.05 Aligned_cols=376 Identities=14% Similarity=0.150 Sum_probs=137.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
+.|++++|.+.++++. +..+|..|+.++.+.|++++|++.|.+. .|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455666666666652 1236666666666666666666666432 244566666666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
+++.+.+. ..+..+...++.+|.+.|++.+++++++ .|+..+|+.+++.|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55555442 2234555566666666666666665553 234446666666666666666666666644
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (779)
..|..++.++.+.|++++|.+.++++ -+..+|..++.+|...|+++.|......+ ..++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 25666666666666666666666655 14566666666666666666664433321 1233334456
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCC------CCHHHHHHHHH
Q 004006 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA--GEMKRALEIFDMMRRSGCI------PTVHTFNALIL 619 (779)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~ 619 (779)
+..|.+.|++++|+.+|+...... .-....|+-|..+|++- +++.+.+++|..-. ++. -+...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665544 22344455444444432 23333343332110 010 13445667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-C-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004006 620 GLVEKRQMEKAIEILDEMTLAG-I-------------SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYE 685 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~-~-------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 685 (779)
.|.+-++++.|... |.+.- . ..+...|-..+.-|.... -.++.-+...+.. ..| .+
T Consensus 291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--p~~l~~ll~~l~~--~ld---~~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSP--RLD---HT 360 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--GGGHHHHHHHHGG--GCC---HH
T ss_pred HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHh--ccC---cH
Confidence 77777777766542 22220 0 223334444444443111 1111111112211 112 13
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (779)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (779)
.++..+.+.|++.-+..++..+... .+..+-.+|-..|....|++.-..-++
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555667777777777777766653 355555677777777777766555544
No 34
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=157.26 Aligned_cols=83 Identities=13% Similarity=0.362 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccC--CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.++|||||||+++|+++|+++|++|| .|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d-~~tg~skGfaFV~f~~~~~A~~Ai~~l--ng~~~~Gr~l~V 131 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN-RANGQSKGYAEVVVASENSVHKLLELL--PGKVLNGEKVDV 131 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHS--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEeEE
Confidence 35999999999999999999999999 9999999999 899999999999999999999999999 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
.++.++..
T Consensus 132 ~~a~~~~~ 139 (156)
T 3n9u_C 132 RPATRQNL 139 (156)
T ss_dssp EECCHHHH
T ss_pred EEcCCCcc
Confidence 99977643
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.1e-16 Score=163.92 Aligned_cols=263 Identities=8% Similarity=-0.044 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+..+...+...|++++|+.+|+++.+... .+..++..+..++...|++++|.+.|+++++.. +.+..++..++..|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3456678888899999999999999988753 367788888999999999999999999998874 33678888899999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNI--------------IY-AQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 441 (779)
...|++++|+..|+++.+.... +...+..+ .. ++...|++++|+++++++.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 9999999999999999887543 33344333 22 3555666666666666666553 334555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (779)
+...|...|++++|+..++++.+... .+..++..++.++...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 66666666666666666666655422 244555566666666666666666666655542 2244555555556666666
Q ss_pred HHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004006 522 WANVFAVFEDVMRDGLKP-----------DVVLYNNIIRAFCGMGNMDRAIHIVK 565 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (779)
+++|...|+++.+..... +...|..+..++.+.|+.++|..+++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666665555432221 23445555555555555555555544
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3e-17 Score=166.69 Aligned_cols=381 Identities=8% Similarity=0.075 Sum_probs=179.9
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
..++|+. +.|.+.++++- .+..|..|+.++.+.|++++|++.|.+.
T Consensus 13 l~~~~~l---------d~A~~fae~~~--------------------~~~vWs~La~A~l~~g~~~eAIdsfika----- 58 (449)
T 1b89_A 13 IEHIGNL---------DRAYEFAERCN--------------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCH---------HHHHHHHHhCC--------------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----
Confidence 3566666 77777777771 2346788999999999999999999763
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
+|...|..++..+...|++++|+..++..++. .++..+.+.++.+|.+.|+++++.++|+ .++..+|..+
T Consensus 59 -~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~I 128 (449)
T 1b89_A 59 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 128 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTT-------CC--------
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHH
Confidence 37779999999999999999999988777664 3467889999999999999999998885 2577799999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 004006 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (779)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 487 (779)
+..|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|++
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp --------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcH
Confidence 99999999999999999977 46999999999999999999999988 2789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 004006 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM--GNMDRAIHIVK 565 (779)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 565 (779)
+.|......+ .........++..|.+.|.+++|..+++..+... .-....|+.|.-+|++- +++.+.+++|.
T Consensus 194 ~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 194 RLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9996655442 2344445578999999999999999999988665 34677888887777765 23444444443
Q ss_pred HHHHcCCC------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHH
Q 004006 566 EMQKERHR------PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC-----------IPTVHTFNALILGLVEKRQME 628 (779)
Q Consensus 566 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~ 628 (779)
.- .++. -+...|..+...|.+.++++.|......-....+ ..+...|...|.-|.... .
T Consensus 268 ~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--p 343 (449)
T 1b89_A 268 SR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--P 343 (449)
T ss_dssp TT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--G
T ss_pred HH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC--H
Confidence 21 1111 1567889999999999999988775432211101 013344444444444211 1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004006 629 KAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTK 705 (779)
Q Consensus 629 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (779)
.++.-|-..... +.| .+.++..+.+.|++.-+..++..+...+ +..+-.+|-..|....+++.-..-++
T Consensus 344 ~~l~~ll~~l~~--~ld---~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 344 LLLNDLLMVLSP--RLD---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp GGHHHHHHHHGG--GCC---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccC---cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 111111111111 111 2344555666777766777776666543 55566667777777777766555444
No 37
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=141.99 Aligned_cols=78 Identities=31% Similarity=0.473 Sum_probs=75.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeE--------EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
++|||||||+++++++|+++|++||.|.+ ++++.| +.+|+++|||||+|.+.++|.+|++.| ||..++|
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~G~afV~f~~~~~a~~Ai~~l--~g~~~~g 90 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWF--DGKEFSG 90 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC-TTTCSEEEEEEEEBSSHHHHHHHHHHH--TTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec-CCCCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCC
Confidence 49999999999999999999999999999 999999 889999999999999999999999999 9999999
Q ss_pred eEEEEEecC
Q 004006 224 RVLTVKLDD 232 (779)
Q Consensus 224 ~~~~v~~~~ 232 (779)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1e-18 Score=137.25 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=77.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||+|||.++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCccceEEEEECCHHHHHHHHHHh--cCCeeCCcEEEEEec
Confidence 58999999999999999999999999999999999 889999999999999999999999999 999999999999999
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
+++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 776
No 39
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=8.8e-17 Score=164.74 Aligned_cols=279 Identities=8% Similarity=-0.040 Sum_probs=186.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..+|...|++++|...|+++.+.... +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 34456677888888999999999998888764 336778888888888889999999888888876443 6777888888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCH
Q 004006 550 AFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL--GLVEKRQM 627 (779)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~ 627 (779)
.+...|++++|+..++++...... +...+..++..+ ++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888888876543 333333221100 01111111212 24556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 628 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
++|+.+++++.+.. +.+...+..+...|...|++++|..+++++.+.. +.+..++..++.+|...|++++|..+++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766543 3355666677777777777777777777776654 345667777777777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP-----------DVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----------d~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
.+.. +.+...+..++.+|.+.|++++|.++++++.+..-.. +..+|..+..++...|+.++|.+++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6654 4556677777777777777777777777776642111 355677777777777777777777654
No 40
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=149.41 Aligned_cols=84 Identities=19% Similarity=0.471 Sum_probs=79.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.+
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD-RETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNKRLKVAL 118 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEE-TTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9877543
No 41
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.1e-18 Score=131.35 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=69.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+..||||||++.+|+++|+++|.+||+|.+++++.. ||||||+|.+.++|.+|++.| ||..+.||.|+|++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-------kGfaFVey~~~~eA~~Ai~~L--n~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-------QGIALCKYTTREEANKAQMAL--NNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-------CcEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEEE
Confidence 358999999999999999999999999999999865 999999999999999999999 99999999999999
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
|+
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 42
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=2.2e-19 Score=142.99 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=72.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccC--CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+|||||||+++|+++|+++|++|| .|.+++++.| +.+|+++|||||+|.+.++|.+|++.| ||..++||.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~-~~~g~~kG~afV~f~~~~~a~~Ai~~l--~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC-TTTCCEEEEEEECC-CHHHHHHHHHHG--GGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec-CCCCccCcEEEEEECCHHHHHHHHHHc--CCCeeCCEEEEEE
Confidence 4899999999999999999999999 9999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.+..
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 987663
No 43
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2.5e-18 Score=145.28 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=75.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 115 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID-KQTSLSKCFGFVSFDNPDSAQVAIKAM--NGFQVGTKRLKVQ 115 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC-SSSSCCCCEEEEEEESSHHHHHHHHHC--CCCEETTEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCcCcEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 44
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1.7e-18 Score=140.01 Aligned_cols=84 Identities=14% Similarity=0.407 Sum_probs=79.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||||||.++++++|+++|++||.|.+++|+.| +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD-PQTGRSKGYAFIEFRDLESSASAVRNL--NGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTCCBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEE
Confidence 469999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9887533
No 45
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=137.92 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||.++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98765
No 46
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.7e-19 Score=140.10 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=72.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.+..+|..|+||+|+|++
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 459999999999999999999999999999999987 8999999999999999999882234789999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++...
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9877544
No 47
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=3.7e-19 Score=144.54 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=77.7
Q ss_pred cceEEeccCCC------cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec-
Q 004006 151 EGKIFVGNLPN------WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG- 223 (779)
Q Consensus 151 ~~~~~v~~l~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~- 223 (779)
+++|||+|||+ ++++++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|.+|++.| ||..++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPID-EATGKTKGFLFVECGSMNDAKKIIKSF--HGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHh--CCcccCCC
Confidence 45999999999 9999999999999999999999999 889999999999999999999999999 9999999
Q ss_pred eEEEEEecCCc
Q 004006 224 RVLTVKLDDGR 234 (779)
Q Consensus 224 ~~~~v~~~~~~ 234 (779)
+.|+|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999765
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.2e-18 Score=136.08 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC-CCCCccccEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 974
No 49
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=135.62 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=71.5
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce--eeceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE--FHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~--~~~~~~ 226 (779)
.++.+|||+|||+++|+++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+ ||.. ++||+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~AFVef~~~~~A~~Av~~l--n~~~~~i~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-------KRQALVEFEDVLGACNAVNYA--ADNQIYIAGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--HHSCEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHh--cCCCceeCCcEE
Confidence 34569999999999999999999999999999999876 899999999999999999999 7765 789999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+|++++++.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998764
No 50
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=7.6e-19 Score=142.93 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=74.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++++++|+++|++|| |.+|+|++++..+|+++|||||+|.+.++|.+|+ .+ ||..++|+.|+|+++
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l--~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNRRIRVDVA 95 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT--TTCCBTTBCCCCEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc--CCCEECCeEEEEEec
Confidence 5999999999999999999999999 9999999983269999999999999999999999 88 999999999999999
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
+++
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 775
No 51
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=138.08 Aligned_cols=81 Identities=23% Similarity=0.415 Sum_probs=77.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| ||..++|++|+|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRVS 90 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC-SSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3459999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 004006 230 LDDG 233 (779)
Q Consensus 230 ~~~~ 233 (779)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9865
No 52
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=137.16 Aligned_cols=79 Identities=19% Similarity=0.491 Sum_probs=76.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD-KDTRKSKGVAFILFLDKDSAQNCTRAI--NNKQLFGRVIKASI 92 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCC-SSSCCCTTCEEEEESCHHHHHHHHHHT--TTEEETTEEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEEEe
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=138.33 Aligned_cols=84 Identities=25% Similarity=0.535 Sum_probs=79.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||.++++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD-SDTGRSKGYGFITFSDSECARRALEQL--NGFELAGRPMRVGH 81 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECC-SSSCCCCSEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEE
Confidence 469999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++..+
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9877543
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=2.4e-18 Score=143.80 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=74.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||||||+++|+++|+++|++||.|.+|+|++| + ++++|||||+|.+.++|++|++.| ||..|+|+.|+|.++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d-~--~~~kg~afV~f~~~~~A~~Ai~~l--~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGRF 80 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T--TEEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEES
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeec-C--CCCCceEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 48999999999999999999999999999999988 3 457999999999999999999999 999999999999999
Q ss_pred CCcch
Q 004006 232 DGRRL 236 (779)
Q Consensus 232 ~~~~~ 236 (779)
+++..
T Consensus 81 ~~~~~ 85 (115)
T 4f25_A 81 KSRKE 85 (115)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 77643
No 55
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=139.08 Aligned_cols=84 Identities=27% Similarity=0.424 Sum_probs=79.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID-SLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC-TTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 4469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987753
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=142.02 Aligned_cols=82 Identities=24% Similarity=0.524 Sum_probs=78.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||..+++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|++
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD-SETGRSKGYGFITFSDSECAKKALEQL--NGFELAGRPMKVGH 102 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE-TTTTEEEEEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
No 57
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=138.46 Aligned_cols=81 Identities=21% Similarity=0.433 Sum_probs=77.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.+
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN-R-AGKPKGLAYVEYENESQASQAVMKM--DGMTIKENIIKVAI 92 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTEESSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC-C-CCCEEeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 459999999999999999999999999999999998 5 8999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98774
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=3.7e-18 Score=143.38 Aligned_cols=83 Identities=22% Similarity=0.458 Sum_probs=78.9
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID-KQTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGMKRLKVQL 101 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCCcCccEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987753
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=141.41 Aligned_cols=85 Identities=24% Similarity=0.396 Sum_probs=80.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 89 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD-KTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNV 89 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEE
Confidence 34569999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
.+++++..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987753
No 60
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=142.15 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=79.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC------Cceeec
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD------GVEFHG 223 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~------g~~~~~ 223 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.+ | |..++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~~--~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH-PDTEHSKGCAFAQFMTQEAAQKCLAAA--SLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCCBCSEEEEEESSHHHHHHHHHHH--CTTTTTCCEESSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCccEEEEEECCHHHHHHHHHHh--ccccccCCcEEcC
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9 999999
Q ss_pred eEEEEEecCCcchh
Q 004006 224 RVLTVKLDDGRRLK 237 (779)
Q Consensus 224 ~~~~v~~~~~~~~~ 237 (779)
+.|+|.++.++..+
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999877543
No 61
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=5.1e-16 Score=155.04 Aligned_cols=256 Identities=9% Similarity=0.064 Sum_probs=176.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
|+.....|+++.|+..++................+.++|...|++++|+..++.. -.++..++..++..+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 3445567888888888777654321111234556677888888888888766441 245667777788888888888
Q ss_pred HHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (779)
++|++.|+++...+. .-+...+..++.+|...|++++|++++++ +.+..++..++..|.+.|++++|++.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888876643 22566677777888888888888888876 34567777778888888888888888888
Q ss_pred HHHCCCCCCHhhH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 462 LKECGFSPSIISY---GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (779)
Q Consensus 462 ~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (779)
+.+.. |+.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..+|.+.|++++|...|+++++....
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 87753 332211 122333444577888888888877763 446777777777888888888888888887776444
Q ss_pred CCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcCC
Q 004006 539 PDVVLYNNIIRAFCGMGNMDR-AIHIVKEMQKERH 572 (779)
Q Consensus 539 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 572 (779)
+..++..++..+...|+.++ +.++++++.+..+
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 66777777777777777765 4577777776643
No 62
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=141.01 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=78.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD-RVTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYGKPIRVNK 91 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCSBCSCEEEEESSHHHHHHHHHHS--SSCBCSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCcCCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 97764
No 63
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=139.98 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=80.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC-SSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99877543
No 64
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=138.65 Aligned_cols=83 Identities=25% Similarity=0.532 Sum_probs=78.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++ + ||..++|+.|+|.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD-AEKQRPRGFGFITFEDEQSVDQAVN-M--HFHDIMGKKVEVK 84 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC-TTTCSCCSEEEEEESSHHHHHHHHH-H--CCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCCCceEEEEECCHHHHHHHHH-h--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999999 8899999999999999999999998 8 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987753
No 65
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=142.39 Aligned_cols=82 Identities=18% Similarity=0.365 Sum_probs=77.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|+ .+ ||..|+|+.|+|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD-RNSRRSKGIAYVEFCEIQSVPLAI-GL--TGQRLLGVPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS-CCSSSCCCCEEEEESCGGGHHHHH-HH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec-CCCCccCcEEEEEeCcHHHHHHHH-Hc--CCCEeCCeEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999 88 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 987653
No 66
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=4.2e-18 Score=141.83 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=78.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||.++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 101 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC-TTTSSBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997664
No 67
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=140.46 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=78.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE-PHTKAPRGFAFVRFHDRRDAQDAEAAM--DGAELDGRELRVQ 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC-SSSCSBCSCEEEEESSSSHHHHHHHHH--SSCCBTTBCCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCCCeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEE
Confidence 4469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998664
No 68
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=3.6e-18 Score=141.04 Aligned_cols=83 Identities=24% Similarity=0.437 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||||||+++|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.+ |..++|+.|+|.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~tg~~kg~afV~f~~~~~A~~Ai~~~---~~~l~g~~l~V~ 99 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQS---RHELDSKTIDPK 99 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC-TTTCCCTTCEEEEESSHHHHHHHHHSS---CEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC-CCCCCcCcEEEEEECCHHHHHHHHHHC---CCcCCCEEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999875 699999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987753
No 69
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=148.79 Aligned_cols=81 Identities=16% Similarity=0.354 Sum_probs=76.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeE--EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc----eeece
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV----EFHGR 224 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~----~~~~~ 224 (779)
.++|||||||+++|+++|+++|++||.|.. |+|++| +.||++||||||+|.+. +|.+|+..| ||. .++||
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d-~~tg~~rG~aFV~f~~~-~a~~Ai~~l--~g~~~~~~~~gr 98 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD-KQTQLNRGFAFIQLSTI-EAAQLLQIL--QALHPPLTIDGK 98 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC-SSSSSBCSCEEEECCHH-HHHHHHHHH--TTCCCSCCGGGC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc-CCCCCcceEEEEEECCH-HHHHHHHHh--cCCCCCccCCCE
Confidence 359999999999999999999999999976 999999 88999999999999999 999999999 999 99999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 70
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=140.31 Aligned_cols=79 Identities=28% Similarity=0.491 Sum_probs=74.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||.++++++|+++|++||.|.+|+++.| + ++++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~--~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~a 104 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVNNA 104 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB-T--TBCTTEEEEECCCSHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC-C--CCCceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 59999999999999999999999999999999987 3 458999999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8764
No 71
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=136.14 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=73.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+..++..++||+|+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 4469999999999999999999999999999999876 899999999999999999987446788999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99877543
No 72
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=5.9e-18 Score=142.25 Aligned_cols=84 Identities=23% Similarity=0.364 Sum_probs=79.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRTN 90 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987653
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=141.08 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=78.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec-CCCCceeeEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98765
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=138.26 Aligned_cols=84 Identities=24% Similarity=0.420 Sum_probs=79.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEE-EEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+|||+++++++|+++|++||.|.++ +|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD-PDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC-TTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc-CCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34699999999999999999999999999999 99998 889999999999999999999999999 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
++++++..
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 99977653
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=6e-18 Score=134.94 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=76.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|+ .+ ||..++|+.|+|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~-~~--~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD-KFSGHPKGFAYIEFSDKESVRTSL-AL--DESLFRGRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES-CSSSSCCEEEEEEESSTHHHHHHG-GG--TTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHH-hc--CCCEECCcEEEEEE
Confidence 469999999999999999999999999999999999 889999999999999999999999 88 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
+++.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9765
No 76
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-18 Score=139.10 Aligned_cols=78 Identities=15% Similarity=0.302 Sum_probs=73.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|+|++| +. |+++|||||+|.+.++|.+|+. + ||..++|+.|+|.+
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d-~~-g~~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-LH-KAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLILF 85 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC-CT-TSCCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC-CC-CCCccEEEEEECCHHHHHHHHH-c--CCCEECCEEEEEEE
Confidence 459999999999999999999999999999999999 65 9999999999999999999998 7 99999999999998
Q ss_pred cCC
Q 004006 231 DDG 233 (779)
Q Consensus 231 ~~~ 233 (779)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=5.2e-18 Score=144.36 Aligned_cols=83 Identities=24% Similarity=0.443 Sum_probs=78.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~l--ng~~i~g~~l~V~ 121 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRVD 121 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECC-SSSSCCCCEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3459999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997763
No 78
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=7.3e-18 Score=139.11 Aligned_cols=84 Identities=25% Similarity=0.441 Sum_probs=78.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec---eEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG---RVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~---~~~ 226 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.| ||..+.| +.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-P-DGSSKGCAFVKFSSHTEAQAAIHAL--HGSQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-S-SSCEEEEEEEEESSHHHHHHHHHHH--SSCCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCcCcEEEEEeCCHHHHHHHHHHH--cCCccCCCCCccE
Confidence 3469999999999999999999999999999999998 5 7999999999999999999999999 9999988 999
Q ss_pred EEEecCCcchh
Q 004006 227 TVKLDDGRRLK 237 (779)
Q Consensus 227 ~v~~~~~~~~~ 237 (779)
+|.+++++..+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999877543
No 79
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1e-17 Score=132.71 Aligned_cols=79 Identities=25% Similarity=0.508 Sum_probs=73.5
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++ + +|..++|+.|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD-PNTGRSRGFGFILFKDAASVEKVLD-Q--KEHRLDGRVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSTHHHHHHHH-S--SCEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccccEEEEEECCHHHHHHHHH-h--CCCEECCEEEEE
Confidence 34469999999999999999999999999999999999 8899999999999999999999995 4 789999999999
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 80
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=6.7e-18 Score=141.08 Aligned_cols=84 Identities=31% Similarity=0.641 Sum_probs=78.6
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.| + +|+++|||||+|.+.++|++|++.| ||..++|+.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-R-TSKSRGFAFITFENPADAKNAAKDM--NGKSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECS-T-TTTCCCEEEEECSSHHHHHHHHHHC--SSCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 5 8999999999999999999999999 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
++++++..
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99987653
No 81
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.6e-17 Score=141.77 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=78.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|+ .+ ||..|+|+.|+|
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD-KFSGHPKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIKV 109 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE-CTTSSCEEEEEEEESSHHHHHHHH-TT--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcccEEEEEECCHHHHHHHH-hc--CCCeECCeEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999 78 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++++..
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9997654
No 82
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-18 Score=139.38 Aligned_cols=84 Identities=30% Similarity=0.554 Sum_probs=79.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD-RETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGRQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC-SSSCSCCSEEEEECSSHHHHHHHHHHH--TTCCTTSCCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9977653
No 83
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.8e-18 Score=137.66 Aligned_cols=83 Identities=27% Similarity=0.476 Sum_probs=77.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCC---CCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN---FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +. ||+++|||||+|.+.++|.+|++.| ||..++|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~gt~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKK-KNKAGVLLSMGFGFVEYKKPEQAQKALKQL--QGHTVDGHKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-ECTTCCEEEEEEEEEEESSHHHHHHHHHHS--TTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCcCcccEEEEEECCHHHHHHHHHHh--CCCeeCCeEE
Confidence 3469999999999999999999999999999999998 54 6699999999999999999999999 9999999999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+|.+++++.
T Consensus 81 ~V~~a~~~~ 89 (98)
T 2cpf_A 81 EVRISERAT 89 (98)
T ss_dssp EEECSSCSS
T ss_pred EEEEccCCC
Confidence 999997764
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=3.9e-18 Score=130.75 Aligned_cols=75 Identities=25% Similarity=0.478 Sum_probs=71.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|++|++ + ||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD-KTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBC-SSSTTSCBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999998 8899999999999999999999997 7 999999999999875
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=134.90 Aligned_cols=80 Identities=29% Similarity=0.576 Sum_probs=75.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+.+++++|+++|++||.|.+|+|+.| +. |+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~-~~-g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD-RE-GKPKSFGFVCFKHPESVSYAIALL--NGIRLYGRPINVS 90 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TT-SCEEEEEEEEESSTHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHHh--CCCEECCCEEEEE
Confidence 3469999999999999999999999999999999998 54 999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 004006 230 LDDG 233 (779)
Q Consensus 230 ~~~~ 233 (779)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 86
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=134.06 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=74.7
Q ss_pred ccceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
++++|||||||+++++++|+ ++|++||.|.+|+|+.| +.+ +|||||+|.+.++|.+|++.| ||..++||.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~-~~~---rg~afV~f~~~~~A~~Ai~~l--~g~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH-TDY---QLKAVVQMENLQDAIGAVNSL--HRYKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSC-CST---TCCEEEEESSHHHHHHHHHHH--TTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeC-CCC---CeEEEEEECCHHHHHHHHHHh--CCCEECCeE
Confidence 44699999999999999999 99999999999999998 554 899999999999999999999 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|++++++.
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=7.9e-18 Score=133.99 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=76.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCC-CcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK-NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.++|||+|||.++|+++|+++|++||.|.+++++.+ +.+++ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE-RMHPHLSKGYAYVEFENPDEAEKALKHM--DGGQIDGQEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTEEEEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeC-CCCCCCCCcEEEEEEecHHHHHHHHHHc--CCCeECCeEEEEE
Confidence 469999999999999999999999999999999998 65555 8999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.+..
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987653
No 88
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=6.3e-18 Score=139.76 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee---eceEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HGRVLT 227 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~---~~~~~~ 227 (779)
.++|||+|||.++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..+ +|++|+
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD-RFTGMHKGCAFLTYCERESALKAQSAL--HEQKTLPGMNRPIQ 89 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC-SSSCSCCSEEEEEESSHHHHHHHHHHH--TTTCCCTTCSSCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--cCCcccCCCCceEE
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99998 999999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.+++++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987653
No 89
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=7.5e-18 Score=138.26 Aligned_cols=81 Identities=28% Similarity=0.478 Sum_probs=76.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++|| |.+|+|+.| +.+|+++|||||+|.+.++|.+|+ .| ||..|+|+.|+|.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD-KDTDKFKGFCYVEFDEVDSLKEAL-TY--DGALLGDRSLRVDI 89 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHG-GG--TTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec-CCCCccceEEEEEECCHHHHHHHH-hh--CCCeECCeEEEEEE
Confidence 46999999999999999999999997 999999999 889999999999999999999999 78 99999999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987753
No 90
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1e-15 Score=152.80 Aligned_cols=250 Identities=13% Similarity=0.075 Sum_probs=118.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSI--ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (779)
+.....|++..|+..++++... .|+. .....+..+|...|+++.|+..++.. -.++..++..+...|...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 3445566666666665554332 1221 23344555666666666666544331 13344455555555555566
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004006 522 WANVFAVFEDVMRDGLKP-DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 600 (779)
.++|++.++++...+..| +...+..+..++...|++++|++.|++ ..+...+..++..|.+.|++++|+..|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666655544323 333444444555555555555555554 1233444445555555555555555555
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004006 601 MMRRSGCIPTVHTF---NALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL 677 (779)
Q Consensus 601 ~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 677 (779)
++.+.. |+.... ..++..+...|++++|+.+|+++.+.. +.+...|+.+..++.+.|++++|...|+++++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 555432 221100 111122222344555555555544432 3344444444445555555555555555544443
Q ss_pred CCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Q 004006 678 ELDVFTYEALLKACCKSGRMQS-ALAVTKEMSA 709 (779)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 709 (779)
+.+..++..++..+...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2344444444444444444433 3344444444
No 91
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-18 Score=140.50 Aligned_cols=84 Identities=26% Similarity=0.424 Sum_probs=79.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCee--------EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
+.++|||+|||+++|+++|+++|++||.|. .|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD-KETGKPKGDATVSYEDPPTAKAAVEWF--DGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC-TTTCSBCSEEEEEBSSHHHHHHHHHHH--TTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe-CCCCCeeeEEEEEECCHHHHHHHHHHc--CCCcc
Confidence 446999999999999999999999999999 6999999 889999999999999999999999999 99999
Q ss_pred eceEEEEEecCCcch
Q 004006 222 HGRVLTVKLDDGRRL 236 (779)
Q Consensus 222 ~~~~~~v~~~~~~~~ 236 (779)
+|+.|+|.+++++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987753
No 92
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.5e-18 Score=138.37 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=73.3
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.++++|||||||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.+..+|..|+|++|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 34569999999999999999999999999999999987 89999999999999999998822256899999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
++++++...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999887644
No 93
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.1e-18 Score=137.44 Aligned_cols=83 Identities=14% Similarity=0.360 Sum_probs=78.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCee-EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE---
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK-NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV--- 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~--- 225 (779)
+.++|||+|||+++++++|+++|++||.|. +|+|++| +.+|+++|||||+|.+.++|++|++.| ||..++|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN-RLTGIPAGYCFVEFADLATAEKCLHKI--NGKPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC-SSSCCEEEEEEEECSCHHHHHHHHHTT--TTSEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec-CCCCCcCCEEEEEeCCHHHHHHHHHHH--cCCccCCCCcce
Confidence 446999999999999999999999999999 9999999 889999999999999999999999999 999999999
Q ss_pred -EEEEecCCcc
Q 004006 226 -LTVKLDDGRR 235 (779)
Q Consensus 226 -~~v~~~~~~~ 235 (779)
|+|+++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997664
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.9e-18 Score=138.10 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=76.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCC-CCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF-EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.++|||+|||+++++++|+++|++|| |.+|+|+.+ +.+ |+++|||||+|.+.++|.+|+ .+ ||..|+|+.|+|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~-~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE-PSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNKRIRVD 89 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBC-SSCTTSBCSCEEEEESSHHHHHHHH-GG--GTCEETTEECEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecC-CCCCCCcCeEEEEEECCHHHHHHHH-hc--CCCEeCCcEEEEE
Confidence 35999999999999999999999999 999999999 666 999999999999999999999 88 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877533
No 95
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.3e-18 Score=139.31 Aligned_cols=85 Identities=29% Similarity=0.531 Sum_probs=80.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+.+++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALRVDN 84 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBEEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEe
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchhh
Q 004006 231 DDGRRLKN 238 (779)
Q Consensus 231 ~~~~~~~~ 238 (779)
++++..+.
T Consensus 85 a~~~~~~~ 92 (104)
T 1p1t_A 85 AASEKNKE 92 (104)
T ss_dssp TTCTTHHH
T ss_pred CCCccchh
Confidence 98876544
No 96
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=5.4e-17 Score=138.23 Aligned_cols=83 Identities=24% Similarity=0.364 Sum_probs=77.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECC-S-SSSCCSEEEEEESSHHHHHHHHHHH--TTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 34569999999999999999999999999999999998 6 8999999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++.+..
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997653
No 97
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-18 Score=135.40 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=76.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++++++|+++|++||.|.+++|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.++|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD-KTTNKCKGYGFVDFDSPSAAQKAVTAL--KASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC-SSSCSCCSEEEEEESCHHHHHHHHHHH--HHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHh--cCCeEeeEEEeec
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999988
Q ss_pred ecCC
Q 004006 230 LDDG 233 (779)
Q Consensus 230 ~~~~ 233 (779)
+.++
T Consensus 81 ~~~s 84 (85)
T 1x4e_A 81 GPSS 84 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-18 Score=135.24 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=70.1
Q ss_pred ccceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC--ceeeceEE
Q 004006 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG--VEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g--~~~~~~~~ 226 (779)
++++|||||||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.| || ..|+||+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l--~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYY--TTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHH--HHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHH--cCCCceECCcEE
Confidence 456999999999 9999999999999999999999987 799999999999999999998 65 56999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|++++..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999754
No 99
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-17 Score=133.82 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=73.1
Q ss_pred ceEEeccC----CCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCC----HHH----HHHHHHHhhhCCc
Q 004006 152 GKIFVGNL----PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG----PAA----EKSAMKAVEFDGV 219 (779)
Q Consensus 152 ~~~~v~~l----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~~~~~~g~ 219 (779)
..|||||| ++.+++.+|+++|++||.|.++.++.| +.||+++|||||+|.+ +++ |.+|+..+..||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~D-p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFND-PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEEC-TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 48999999 999999999999999999999999999 9999999999999996 333 7788773223999
Q ss_pred eeeceEEEEEecCCcch
Q 004006 220 EFHGRVLTVKLDDGRRL 236 (779)
Q Consensus 220 ~~~~~~~~v~~~~~~~~ 236 (779)
.|+||.|+|.+-+...+
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999999766654
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=1.9e-17 Score=137.08 Aligned_cols=81 Identities=26% Similarity=0.420 Sum_probs=76.3
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...++|||+|||+.+++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-R-SGRSLGTADVHFERKADALKAMKQY--NGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 34469999999999999999999999999999999998 5 8999999999999999999999999 999999999999
Q ss_pred EecCC
Q 004006 229 KLDDG 233 (779)
Q Consensus 229 ~~~~~ 233 (779)
+++.+
T Consensus 103 ~~a~s 107 (107)
T 3ulh_A 103 QLVTS 107 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99853
No 101
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=7.1e-16 Score=164.70 Aligned_cols=349 Identities=12% Similarity=0.078 Sum_probs=161.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM---EEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+...+.+.|++++|+++|+++.+.| +...+..|...|...|+. ++|+.+|++..+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555566666666666666665554 334444455555555555 5666666655542 44445555553443
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 379 MG-----NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 379 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
.+ ++++|+.+|++..+.+ +...+..|...|...+...++.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~------------------------------- 127 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVN------------------------------- 127 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCC-------------------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHH-------------------------------
Confidence 33 4556666666665543 22355555555554433222221
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK---DWANVFAVFE 530 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~ 530 (779)
+++.+.+....| +...+..|...|...+.++++.+....+.+.-...+...+..|..+|...| +.++|+..|+
T Consensus 128 -a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 128 -AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp -HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 222222222222 233344444444444433332222111111101111224445555555555 5555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHH
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCGM----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHG-F--ARAGEMKRALEIFDMMR 603 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~ 603 (779)
+..+.|.. +...+..|..+|... +++++|+.+|++.. .+ +...+..|... | ...+++++|+..|++..
T Consensus 204 ~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 204 AGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 55555433 333334444444333 45666666666555 21 33344444444 2 34566666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004006 604 RSGCIPTVHTFNALILGLVEKR-----QMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFTKLRN 674 (779)
Q Consensus 604 ~~~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 674 (779)
+.| +...+..|...|. .| ++++|+..|++.. . -+...+..|...|.. ..++++|..+|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 654 4555555555555 33 6667777666655 2 244555555555554 2367777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 004006 675 EGLELDVFTYEALLKACCK----SGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (779)
.|. ......|..+|.. ..+.++|..++++..+.|
T Consensus 351 ~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 351 NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 652 2334455555543 336677777777776655
No 102
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=136.90 Aligned_cols=83 Identities=24% Similarity=0.408 Sum_probs=77.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEM--NGRIVATKPLYVA 88 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 4569999999999999999999999999999999986 7999999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99877543
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-18 Score=129.97 Aligned_cols=76 Identities=24% Similarity=0.473 Sum_probs=73.0
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.+ | ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~~--~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC-CCSSSCSSEEEECCCCTTHHHHHHHTT--T-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC-CCCCCcCceEEEEEcCHHHHHHHHHhC--C-CccCCEEEEEEec
Confidence 48999999999999999999999999999999998 889999999999999999999999998 7 9999999999986
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.2e-18 Score=137.11 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=76.9
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|++|++.| ||..|+|+.|+|++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLVL 91 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE-CCCCCeeeEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEEE
Confidence 359999999999999999999999999998888888 889999999999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
++++
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8765
No 105
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=133.08 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=71.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+..++..++|++|+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3459999999999999999999999999999999876 899999999999999999988223445999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++.+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987753
No 106
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=134.53 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=75.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|+.| +. .++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~--~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HT--SNDPYCFVEFYEHRDAAAALAAM--NGRKILGKEVKVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC-CC--SSCCEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec-CC--CCCCEEEEEECCHHHHHHHHHHh--CCCCcCCCeEEEE
Confidence 3469999999999999999999999999999999987 43 36899999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987653
No 107
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=1.1e-15 Score=163.32 Aligned_cols=270 Identities=9% Similarity=0.017 Sum_probs=148.4
Q ss_pred cHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-----ChHHH
Q 004006 280 NWQAVVSAFERIKK-PSRREFGLMVNYYARRGDM---HRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-----DMEEA 350 (779)
Q Consensus 280 ~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 350 (779)
++......|.+... -+...+..|...|...|+. ++|+.+|++..+. +...+..+...+...+ ++++|
T Consensus 18 ~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 34555555554321 2444566677888888988 9999999999864 5677777777555555 78999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004006 351 LSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA---ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (779)
Q Consensus 351 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (779)
+..|++..+.| +...+..|...|...+..++ +.+.+.+....+ +...+..|...|...+.++++.+....+
T Consensus 94 ~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 94 ESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 99999999976 34478888888887766444 455555555443 4667778888888887666555554333
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc----CCHHHHHHHHHHHHHC
Q 004006 428 EEEGIDAPIDIYHMMMDGYTIIG---NEEKCLIVFERLKECGFSPSIISYGCLINLYTKI----GKVSKALEVSKVMKSS 500 (779)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~ 500 (779)
.+.-...+...+..|..+|...| +.++|++.|.+..+.|.. +...+..|..+|... +++++|++.|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 33222233446777777777777 777777777777776532 444445555555444 56677777776665 3
Q ss_pred CCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHH
Q 004006 501 GIKHNMKTYSMLING-F--LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMG-----NMDRAIHIVKEMQ 568 (779)
Q Consensus 501 ~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 568 (779)
| +...+..|... | ...+++++|+.+|++..+.| +...+..|..+|. .| ++++|+.+|++..
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 2 34445555554 3 34566666666666666554 4455555555554 33 5555555555444
No 108
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=138.35 Aligned_cols=83 Identities=25% Similarity=0.452 Sum_probs=77.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++. ||..|+|+.|+|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD-PASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC-TTTSSCCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CCCCCcCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEEE
Confidence 3469999999999999999999999999999999999 88999999999999999999999964 8999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9987754
No 109
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=138.41 Aligned_cols=81 Identities=31% Similarity=0.455 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++||.|.+|+|+++ +.+|+++|||||+|.+.++|++|++.+ |+ .|+|+.|+|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~~--~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD-RQTGKSRGYGFVTMADRAAAERACKDP--NP-IIDGRKANVN 91 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC-SSSCCCCSEEEEEESSHHHHHHHHTCS--SC-EETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhC--CC-cCCCEEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999998 88 8999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99654
No 110
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=136.98 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHH---HHHhccCCeeEEEEecCCCCC---CCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 150 QEGKIFVGNLPNWIKKHLVM---EFFRQFGPIKNVILIKGYNNF---EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
+.++|||+|||+++++++|+ ++|++||.|.+|+|+++ +.+ ++++|||||+|.+.++|++|++.| ||..|+|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~-~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l--ng~~~~g 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS-TSYAGSQGPSASAYVTYIRSEDALRAIQCV--NNVVVDG 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC-SSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecC-CCcCccCCCCeEEEEEECcHHHHHHHHHHh--CCCEECC
Confidence 34699999999999999999 99999999999999988 654 456699999999999999999999 9999999
Q ss_pred eEEEEEecCCcc
Q 004006 224 RVLTVKLDDGRR 235 (779)
Q Consensus 224 ~~~~v~~~~~~~ 235 (779)
+.|+|++++++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 111
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=139.07 Aligned_cols=79 Identities=14% Similarity=0.333 Sum_probs=72.4
Q ss_pred cceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 151 EGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
+++||||||++.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|.+|+..| ||..|.|++|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~----~~~~rG~aFV~F~~~~~A~~Ai~~l--ng~~l~gr~l 102 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL----SDDNSGKAYIVFATQESAQAFVEAF--QGYPFQGNPL 102 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC----CCSSCCCEEEEESSHHHHHHHHHHS--TTCCCTTSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc----CCCcCCEEEEEECCHHHHHHHHHHH--CCCEeCCCEE
Confidence 3599999999999999876 6999999999988753 5889999999999999999999999 9999999999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+|++++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998774
No 112
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.1e-18 Score=138.26 Aligned_cols=83 Identities=18% Similarity=0.361 Sum_probs=78.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhc-cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce-eeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQ-FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~-~~~~~~~ 227 (779)
+.++|||+|||+++|+++|+++|++ ||.|.+|+|+.| + +|+++|||||+|.+.++|.+|++.| ||.. ++|+.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-Q-TGVSKGYGFVKFTDELEQKRALTEC--QGAVGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC-T-TCCEEEEEEEEESCHHHHHHHHHHT--TTCCSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHHHc--cCCcccCCEeEE
Confidence 4469999999999999999999999 999999999999 6 9999999999999999999999999 9999 9999999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999977643
No 113
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.1e-18 Score=136.02 Aligned_cols=80 Identities=34% Similarity=0.529 Sum_probs=73.8
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||.++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.+ |.+|+..| ||..++|+.|+|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~-a~~a~~~l--~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD-RETKKPKGFGFVEMQEES-VSEAIAKL--DNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC-SSSCCCCEEEEEEECTTH-HHHHHHTS--CSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc-CCCCCcceEEEEEECCHH-HHHHHHHh--CCCEECCeEEEEEEc
Confidence 48999999999999999999999999999999999 889999999999999999 99999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
.+..
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7663
No 114
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.6e-17 Score=133.14 Aligned_cols=83 Identities=27% Similarity=0.477 Sum_probs=76.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|+.+ + +.++|||||+|.+.++|.+|+..| ||..|+|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~--~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC-T--TTTCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-C--CCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999987 3 338999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99877543
No 115
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=135.02 Aligned_cols=80 Identities=28% Similarity=0.527 Sum_probs=74.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|..|+|..+ ++++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGR--DGYDYDGYRLRVEF 95 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 459999999999999999999999999999999765 668999999999999999999999 99999999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987753
No 116
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.1e-17 Score=135.26 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=75.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|..++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLSG 91 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE-CTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe-CCCCCEeeEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEEe
Confidence 359999999999999999999999999999999998 889999999999999999999999999 99999999999998
Q ss_pred cCC
Q 004006 231 DDG 233 (779)
Q Consensus 231 ~~~ 233 (779)
+++
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 117
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.4e-17 Score=132.76 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=75.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|+. ++..++|+.|+|.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD-LKTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHH----SCEEETTEEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec-CCCCCccceEEEEECCHHHHHHHHH----cCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999999 8899999999999999999999996 5889999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqg_A 89 LPNSKQ 94 (103)
T ss_dssp CCCTTC
T ss_pred ecCCCC
Confidence 998764
No 118
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=134.98 Aligned_cols=79 Identities=28% Similarity=0.423 Sum_probs=73.5
Q ss_pred cceEEeccCCCcC------ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 151 EGKIFVGNLPNWI------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 151 ~~~~~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
+++|||||||+.+ |+++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~---~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC---CBTTBSCCEEEEEECSSSHHHHHHHHC--SSEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee---CCCCCeeeEEEEEECCHHHHHHHHHHh--CCcccCCC
Confidence 4599999999999 789999999999999999988 357999999999999999999999999 99999999
Q ss_pred -EEEEEecCCc
Q 004006 225 -VLTVKLDDGR 234 (779)
Q Consensus 225 -~~~v~~~~~~ 234 (779)
+|+|+++.+.
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
No 119
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=2.6e-17 Score=132.12 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=75.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+++|.++ +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME---NGKSKGCGVVKFESPEVAERACRMM--NGMKLSGREIDVR 81 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHH--TTCCBTTBCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999874 7899999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998764
No 120
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=133.48 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=72.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++| .|.+|+|+.| +. |+++|||||+|.+.++|.+|+ .+ ||..|+||.|.|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d-~~-g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKD-HV-GRNNGNGLVKFLSPQDTFEAL-KR--NRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCC-TT-CCCCSEEEEECSSHHHHHHHH-HT--TTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEEC-CC-CCCCeEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEEE
Confidence 3599999999999999999999999 8999999998 55 999999999999999999999 67 99999999999988
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
+..+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7544
No 121
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=3e-17 Score=140.49 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=78.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISVD 97 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTSSBCSCEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 986554
No 122
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=179.42 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004006 610 TVHTFNALILGLVEKRQMEKAIEILDEMTL---AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686 (779)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 686 (779)
-..+||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345677777777777777777777766553 35677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004006 687 LLKACCKSGRM-QSALAVTKEMSAQKIPRNTFVYNILIDGWARR 729 (779)
Q Consensus 687 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 729 (779)
||.+|++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 77777777763 56777777777777777777777776555443
No 123
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=135.27 Aligned_cols=83 Identities=24% Similarity=0.493 Sum_probs=77.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|+.. ||..|+|+.|+|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD-KTTNQSRGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC-SSSCCEEEEEEEEESSTTHHHHHHHH---CSEEETTEEEBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCCcceEEEEEECCHHHHHHHHHh---CCCeECCEEEEEE
Confidence 4469999999999999999999999999999999999 88999999999999999999999975 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9987753
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=4.4e-17 Score=133.08 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=71.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..++|||||||+++++++|+++|++|| .|..++|..+ +++|||||+|.+.++|++|++.| ||..|+||.|+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~l--ng~~l~Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEALERL--NNIEFRGSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 346999999999999999999999999 8999988643 46999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
++++.+.
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9987653
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=139.90 Aligned_cols=79 Identities=24% Similarity=0.461 Sum_probs=74.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||..+++++|+++|++||.|.+++|++| +.+|+++|||||+|.+.++|.+|++.+ ||..|+|+.|+|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 138 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC-TTTCCCCSEEEEEESCHHHHHHHHHHS--TEEEETTEEEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec-CCCCCcCcEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3459999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ec
Q 004006 230 LD 231 (779)
Q Consensus 230 ~~ 231 (779)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 126
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=1.7e-17 Score=141.26 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=74.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCC---eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
+.++|||+|||+++|+++|+++|++||. |.+|+|++| +. |+++|||||+|.+.++|++|++ + ||..|+||.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d-~~-g~srG~aFV~F~~~e~a~~Al~-~--~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYT-RE-GRQSGEAFVELGSEDDVKMALK-K--DRESMGHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEEC-SS-SCEEEEEEEECSSHHHHHHHHT-T--TEEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEEC-CC-CCCCeEEEEEECCHHHHHHHHh-c--CCCEECCEEE
Confidence 3469999999999999999999999999 899999998 66 9999999999999999999999 8 9999999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|.++..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 127
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=135.52 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=76.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 89 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED-K-DGKSRGIGTVTFEQSIEAVQAISMF--NGQLLFDRPMHVK 89 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-T-TCSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCCCEEEEE
Confidence 3469999999999999999999999999999999998 5 5999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98654
No 128
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=2.1e-17 Score=142.02 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=79.1
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~G~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V 121 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRV 121 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC-SSSSSCCSCCEEECSCHHHHHHHHTTT--TTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++++..
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9997764
No 129
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=3.3e-17 Score=137.40 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=74.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCC---eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
+.++|||+|||+++|+++|+++|++||. |..|+|+.| +. |+++|||||+|.+.++|++|++ + ||..|+||.|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT-RE-GRQSGEAFVELESEDDVKLALK-K--DRESMGHRYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC-SS-SCEEEEEEEEBSSHHHHHHHGG-G--TTEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC-CC-CCCCeEEEEEECCHHHHHHHHh-c--CCCeECCeEE
Confidence 4469999999999999999999999999 899999998 55 9999999999999999999998 8 9999999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998654
No 130
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=133.11 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=70.8
Q ss_pred ccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+|||++ +|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.|..++..|+||+|+|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3469999999998 999999999999999999999865 89999999999999999998833456799999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
++++.+.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9997653
No 131
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=134.04 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=77.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|..|+|+.+.+.+|+++|||||+|.+.++|.+|++.| .||..|+|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL-CHSTHLYGRRLVLE 92 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH-HTCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh-ccCCeECCCEEEEE
Confidence 34699999999999999999999999999999999874568999999999999999999999865 15999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998764
No 132
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=7.1e-17 Score=143.87 Aligned_cols=86 Identities=26% Similarity=0.480 Sum_probs=80.3
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD-KMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 34569999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
+++++...+
T Consensus 114 ~~a~~~~~~ 122 (156)
T 1h2v_Z 114 DWDAGFKEG 122 (156)
T ss_dssp EEESCCCTT
T ss_pred EECCCCCCc
Confidence 999876543
No 133
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=135.85 Aligned_cols=83 Identities=22% Similarity=0.409 Sum_probs=77.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCC-eeEEEEe-cCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC--CceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILI-KGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--g~~~~~~~ 225 (779)
+.++|||||||+++|+++|+++|++||. |.+++++ .| +.+|+++|||||+|.+.++|.+|++.| | +..++|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~~g~~~~~g~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA-ADKMKNRGFAFVEYESHRAAAMARRKL--MPGRIQLWGHQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS-CTTTTTCCEEEEEESSHHHHHHHHTTT--TTCCSCBTTBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC-CCCCCcCcEEEEEecCHHHHHHHHHHh--hCCCceecCCe
Confidence 3469999999999999999999999998 9999999 66 889999999999999999999999988 8 79999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|.+++++.
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998774
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-18 Score=137.72 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=74.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.. .++.+ +.+|+++|||||+|.+.++|.+|++ | ||..++|+.|+|.+
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~-~~~g~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEK 91 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH-G--GGCCBTTBCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec-CCCCCcCcEEEEEECCHHHHHHHHh-c--CCcEECCcEEEEEE
Confidence 459999999999999999999999999988 77777 7889999999999999999999998 8 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98764
No 135
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=7.9e-17 Score=144.25 Aligned_cols=82 Identities=24% Similarity=0.416 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|++|+|.+
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRVQM 146 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHS--TTEESSSSEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 469999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98764
No 136
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=1.8e-16 Score=127.70 Aligned_cols=73 Identities=23% Similarity=0.519 Sum_probs=68.9
Q ss_pred ceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
++|||||||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.+ ||..++|+.|+|++
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXE--SQEMNFGKKLILEV 91 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHH--TTSEETTEECEEEE
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEe
Confidence 4999999998 99999999999999999999883 799999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97763
No 137
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=128.45 Aligned_cols=73 Identities=29% Similarity=0.461 Sum_probs=67.9
Q ss_pred ceEEeccCCCcC------ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece-
Q 004006 152 GKIFVGNLPNWI------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR- 224 (779)
Q Consensus 152 ~~~~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~- 224 (779)
++|||||||..+ ++++|+++|++||.|.++++. +.+|+++|||||+|.+.++|.+|++.| ||..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~---~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC---CBTTBCCCEEEEEESSHHHHHHHHTTS--SSCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec---CCCCcEeEEEEEEECCHHHHHHHHHHh--cCcccCCce
Confidence 589999999999 679999999999999999987 358999999999999999999999999 99999999
Q ss_pred EEEEE
Q 004006 225 VLTVK 229 (779)
Q Consensus 225 ~~~v~ 229 (779)
+|+|+
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88763
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=136.60 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=75.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCC---eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
...++|||+|||+++|+++|+++|++||. |.+|+|+.| +. |+++|||||+|.+.++|.+|+. + ||..++||.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RD-GKRRGDALIEMESEQDVQKALE-K--HRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCC-TT-STTCSEEEEEBSSHHHHHHHHT-T--TTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEEC-CC-CCEeeEEEEEECCHHHHHHHHH-h--CcceeCCeE
Confidence 34569999999999999999999999998 899999998 66 9999999999999999999998 8 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|.++..+.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987653
No 139
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=127.59 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=74.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++| .|.+|+|+++ .+|+++|||||+|.+.++|.+|+. + ||..|+|+.|+|.+
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~--~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-C--NREYMGGRYIEVFR 83 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-S--CSEEETTEEEEEEE
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-h--CCceeCCcEEEEEE
Confidence 4599999999999999999999999 9999999987 679999999999999999999999 9 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
++++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9776
No 140
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.8e-17 Score=131.70 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=70.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||.++++++|+++|++||.|.++++.+. +|||||+|.+.++|.+|+..| ||..++|+.|+|.+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE-------KGCCFIKYDTHEQAAVCIVAL--ANFPFQGRNLRTGW 97 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECCCCB
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEe
Confidence 359999999999999999999999999999999855 899999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.7e-17 Score=126.09 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=71.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+|||+|||+++++++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|++ . +|..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~-~--~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIME-K--KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS-CCCSSSCCCEEEECSSSHHHHHHHT-T--SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCCEEEEEECCHHHHHHHHH-h--CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999999 8899999999999999999999997 3 899999999999875
No 142
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=130.85 Aligned_cols=78 Identities=27% Similarity=0.505 Sum_probs=73.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v 83 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVEL--DNMPLRGKQLRV 83 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHH--TTCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHHHHHh--CCCEeCCceEEE
Confidence 34469999999999999999999999999999999876 899999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.+++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9997764
No 143
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.7e-17 Score=135.37 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=75.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCe-eEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPI-KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+.++|||+|||+++|+++|+++|++||.| .+|+|+.| + +|+++|||||+|.+.++|.+|++. ||..|+|+.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~v 88 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-N-NGQGLGQALVQFKNEDDARKSERL---HRKKLNGREAFV 88 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-T-TSSCSSCEEEECSSHHHHHHHGGG---CSEEETTEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHh---CCCccCCeEEEE
Confidence 34599999999999999999999999999 89999999 6 899999999999999999999863 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
.++..+..
T Consensus 89 ~~a~~~~~ 96 (114)
T 2cpy_A 89 HVVTLEDM 96 (114)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99976643
No 144
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1e-14 Score=143.49 Aligned_cols=226 Identities=11% Similarity=0.127 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--C----HhHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--S----LVTY 369 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~----~~~~ 369 (779)
...|..+...+...|++++|+..|+++.+.. .+..+|..+..+|...|++++|++.|++.++..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456778888888888888888888888876 577888888888888888888888888887643111 1 5777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
..++..|.+.|++++|+..|+++..... + ...+.+.|++++|.+.++++.... +.+..++..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 8888888888888888888888877632 2 234556677777777777777653 33455666667777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 450 GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529 (779)
Q Consensus 450 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (779)
|++++|+..|+++.+.... +..++..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777777665322 45666667777777777777777777666643 234566666666666777777777666
Q ss_pred HHHHHC
Q 004006 530 EDVMRD 535 (779)
Q Consensus 530 ~~~~~~ 535 (779)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-17 Score=139.38 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=75.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++||.|.++.++.+ +.+|+++|||||+|.+.++|.+|+. + ||..|+||.|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEE-CCCCCCCeEEEEEECCHHHHHHHHH-h--CCCeECCcEEEEE
Confidence 3469999999999999999999999999998767777 6789999999999999999999999 8 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986653
No 146
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=1.1e-16 Score=143.87 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=78.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+++|||+|||+.+++++|+++|++||.|..|+|+.+ +.+|+++|||||+|.+.++|.+|+..| ||..|+|+.|+|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec-CCCCcEeeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
++.++..+
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99766433
No 147
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.2e-17 Score=132.32 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=72.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.+ +|+|+.| + +|+++|||||+|.+.++|++|+ .+ |+..|+||.|+|..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIG-P-DGRVTGEADVEFATHEDAVAAM-AK--DKANMQHRYVELFL 88 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEES-S-SSCEEEEEEEECSSSHHHHHHH-TT--SSCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEEC-C-CCCEeeEEEEEECCHHHHHHHH-Hh--CCCeECCcEEEEEE
Confidence 3599999999999999999999999954 9999999 6 8999999999999999999999 46 99999999999998
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86553
No 148
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.6e-14 Score=142.16 Aligned_cols=224 Identities=15% Similarity=0.160 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--C----cccHHH
Q 004006 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP--T----SRTFMP 581 (779)
Q Consensus 508 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~~ 581 (779)
.+..+...+...|++++|+.+|+++.+.. .+...+..+..++...|++++|+..|+++....... + ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444555555555555555554443 344455555555555555555555555544432111 0 344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 582 IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD 661 (779)
Q Consensus 582 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 661 (779)
+...|...|++++|+..|+++.+.. ++. ..+.+.|++++|+..++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 5556666666666666666665532 221 23455566777777777776643 2334566677777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+++|+..++++++.. +.+..++..++.+|...|++++|...++++.+.+ +.+...|..++.+|.+.|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888777777765 4467777778888888888888888888877654 55677778888888888888888888888
Q ss_pred HHHc
Q 004006 742 MKQE 745 (779)
Q Consensus 742 m~~~ 745 (779)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7763
No 149
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=1.3e-14 Score=149.72 Aligned_cols=249 Identities=8% Similarity=0.035 Sum_probs=203.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD-MEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+...|..+...+.+.|++++|+..|+++++.+.. +..+|+.+..+|...|+ +++|+..|+++++.... +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 3455777888899999999999999999998533 67889999999999996 99999999999997644 789999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNE 452 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 452 (779)
.+|.+.|++++|+..|+++++.+.. +..+|..+..++.+.|++++|++.|+++++.+ +.+..+|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998766 88999999999999999999999999999986 5578889999999988 6664
Q ss_pred HHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 004006 453 EKC-----LIVFERLKECGFSPSIISYGCLINLYTKIG--KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK----- 520 (779)
Q Consensus 453 ~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----- 520 (779)
++| +..|++.++.... +...|..+..++.+.| ++++|++.+.++ +. ...+...+..+..+|.+.+
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 5788888876433 6778888888888887 688898888887 33 2446778888888888763
Q ss_pred ----CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 004006 521 ----DWANVFAVFEDV-MRDGLKPDVVLYNNIIRAF 551 (779)
Q Consensus 521 ----~~~~a~~~~~~~-~~~g~~~~~~~~~~l~~~~ 551 (779)
.+++|+.+|+++ .+.+.. ....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 258888888888 554322 345565555544
No 150
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.7e-16 Score=130.41 Aligned_cols=76 Identities=26% Similarity=0.496 Sum_probs=70.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.| ||..++|+.|+|.+
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEV--HGKSFANQPLEVVY 99 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 3599999999999999999999999999999987 689999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9877543
No 151
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=1e-16 Score=130.03 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=74.4
Q ss_pred ccceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
++++|||+|||+++++++|+ ++|++||.|.+|++.. +|+++|||||+|.+.++|.+|++.| ||..++|+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~ 80 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDKP 80 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc----CCCcCcEEEEEeCCHHHHHHHHHHh--CCCEECCcE
Confidence 44699999999999999999 9999999999999874 4788999999999999999999999 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|++++++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998774
No 152
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=131.95 Aligned_cols=81 Identities=14% Similarity=0.313 Sum_probs=75.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--------
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-------- 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~-------- 221 (779)
+.++|||+|||+++++++|+++|++||.|.+++|+.| + +|+++|||||+|.+.++|.+|++.| ||..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-S-SGTSRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S-SSCEEEEEEEEESCHHHHHHHHHHH--BTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHh--CCCEEcCCccccC
Confidence 3469999999999999999999999999999999999 6 8999999999999999999999999 99999
Q ss_pred eceEEEEEecCCc
Q 004006 222 HGRVLTVKLDDGR 234 (779)
Q Consensus 222 ~~~~~~v~~~~~~ 234 (779)
.|++|+|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 6888999999765
No 153
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=127.53 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=71.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee--ceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~--~~~~~v 228 (779)
.++|||+|||+++|+++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.| ||..++ |+.|+|
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l--~g~~~~~~g~~l~V 87 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKM--RGFPLGGPDRRLRV 87 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHH--TTCBCSSSSCBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHHHHHH--CCCEeCCCCcEEEE
Confidence 459999999999999999999999999999999865 899999999999999999999 999999 999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
++++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998874
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=130.00 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=74.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++|+ .++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTD-RETGSSKGFGFVDFNSEEDAKAAKEAM--EDGEIDGNKVTLD 87 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 346999999999999999999999874 6778888 888999999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99887543
No 155
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=5.8e-17 Score=153.09 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=77.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccC--CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.++|||+||++++|+++|+++|++|| .|.+|+|++| +.||++||||||+|.+.++|.+||+.| ||..|+|+.|+|
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d-~~tg~skGfaFV~f~~~~~a~~Ai~~l--ng~~~~Gr~l~V 144 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVV 144 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC-TTTCCEEEEEEEEESCTTHHHHHHTTS--TTSCBTTBCCEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCeECCEEeEE
Confidence 35999999999999999999999999 9999999999 899999999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++++..
T Consensus 145 ~~a~~~~ 151 (229)
T 3q2s_C 145 TPVNKQF 151 (229)
T ss_dssp EECCHHH
T ss_pred EECCCCc
Confidence 9997654
No 156
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=129.63 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=72.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.| +++.+ .+|+++|||||+|.+.++|++|++.| ||..|+|+.|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN--QNGKSKGYAFIEFASFEDAKEALNSC--NKREIEGRAIRLE 86 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC--SSSCBCSEEEEECSSHHHHHHHHHHT--SSEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC--CCCCEeeEEEEEECCHHHHHHHHHHh--CCCEeCCeEEEEE
Confidence 34699999999999999999999999987 56654 57999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987753
No 157
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=7.5e-15 Score=139.93 Aligned_cols=197 Identities=13% Similarity=0.036 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...+..+...+.+.|++++|+..|+++++... .+...+..+..++.+.|++++|+..|++.++... .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 445566777778888888888888888777643 2666777777788888888888888888777643 25677777777
Q ss_pred HHHcc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 375 GFAKM-----------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM 443 (779)
Q Consensus 375 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 443 (779)
+|.+. |++++|+..|+++.+..+. +...+..+..+|...|++++|++.|++..+.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 7777777777777766444 56666677777777777777777777776665 4566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
.+|...|++++|+..|+++.+.... +...+..+..++.+.|++++|+..|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666654321 4555666666666666666666666544
No 158
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=131.39 Aligned_cols=77 Identities=22% Similarity=0.262 Sum_probs=71.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|..+ +|||||+|.+.++|.+|++.| ||..++|++|+|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 79 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-------GITAIVEFLEPLEARKAFRHL--AYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-------SSCEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEeCCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 4569999999999999999999999999999998765 899999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
|+....
T Consensus 80 ~a~~~~ 85 (111)
T 1whx_A 80 WAPIGV 85 (111)
T ss_dssp EEETTT
T ss_pred ECCCCc
Confidence 986653
No 159
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=1.8e-16 Score=133.05 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=74.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+|||+++|+++|+++|++||.|.+|+++.+ ++++|||||+|.+.++|.+|+..| ||..++|+.|+|.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNAVDHL--SGFNVSNRYLVVLY 81 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS----TTTTTCEEEEESSHHHHHHHHHHH--TTCBSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 359999999999999999999999999999999876 566999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97654
No 160
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.8e-16 Score=128.86 Aligned_cols=78 Identities=18% Similarity=0.415 Sum_probs=73.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...++|||+|||..+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 93 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVKC 93 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 45579999999999999999999999999999999987 899999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.+++++.
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9998764
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=6.9e-18 Score=141.83 Aligned_cols=86 Identities=29% Similarity=0.419 Sum_probs=80.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeE--------EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
.+.++|||+|||+++++++|+++|++||.|.. |+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 81 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWF--DGKE 81 (116)
Confidence 34569999999999999999999999999998 999998 889999999999999999999999999 9999
Q ss_pred eeceEEEEEecCCcchh
Q 004006 221 FHGRVLTVKLDDGRRLK 237 (779)
Q Consensus 221 ~~~~~~~v~~~~~~~~~ 237 (779)
++|+.|+|++++++..+
T Consensus 82 ~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADF 98 (116)
Confidence 99999999999877544
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=128.00 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=69.8
Q ss_pred ccceEEe--ccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee-----e
Q 004006 150 QEGKIFV--GNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-----H 222 (779)
Q Consensus 150 ~~~~~~v--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~-----~ 222 (779)
++.+||| |||++++++++|+++|++||.|.+|.|..+ ||||||+|.+.++|++|++.| ||..+ +
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHT--TTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCEEccccCC
Confidence 3458999 889999999999999999999999988765 899999999999999999999 99998 7
Q ss_pred ceEEEEEecCCc
Q 004006 223 GRVLTVKLDDGR 234 (779)
Q Consensus 223 ~~~~~v~~~~~~ 234 (779)
|++|.|.+++..
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 999999998654
No 163
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=130.29 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=73.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeE-EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.| .+|+++|||||+|.+.++|.+|+.. ||..++||.|+|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~--~~g~~~G~afV~F~~~~~a~~A~~~---~~~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD--FQGRSTGEAFVQFASQEIAEKALKK---HKERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC--SSSCBCSEEEEEESSHHHHHHHHTT---TTCCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC--CCCCcceEEEEEECCHHHHHHHHHh---CcchhCCcEEEE
Confidence 3469999999999999999999999999997 888886 6799999999999999999999974 899999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
..+..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9886553
No 164
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=128.10 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=70.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|. ++++. ++++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-----QGPRRRAFLHYPDSAAAQQAVSCL--QGLRLGTDTLRVAL 90 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-----ETTTTEEEEECSSHHHHHHHHHHH--TTCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-----CCCCcEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEE
Confidence 45999999999999999999999999997 66664 466999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 165
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=128.10 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=71.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec-----e
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG-----R 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~-----~ 224 (779)
..++|||+|||+++|+++|+++|++||.|.+|+|+.| |||||+|.+.++|++|++.| ||..|+| +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHS--SSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHH--CcCCccCCcCcce
Confidence 3469999999999999999999999999999999875 89999999999999999999 9999999 9
Q ss_pred EEEEEecCCcch
Q 004006 225 VLTVKLDDGRRL 236 (779)
Q Consensus 225 ~~~v~~~~~~~~ 236 (779)
.|+|.+++++..
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 999999987643
No 166
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=128.27 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=71.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+..+ ||..++|+.|+|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 85 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSL 85 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE------EETTEEEEEEEEEESSHHHHHHHHHHT--TEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe------CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 345699999999999999999999999988765 246889999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.+++++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9998774
No 167
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.6e-14 Score=137.63 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=87.8
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..+...+.+.|++++|+..|++.++... .+...+..+..++.+.|++++|+..|+++.+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 444555555556666666666666666655432 24555555666666666666666666666555433 4555555555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004006 410 AQCQT-----------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478 (779)
Q Consensus 410 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 478 (779)
+|... |++++|+..|++..+.+ +.+..++..+..+|...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 44444444444444432 2233344444444444444444444444444433 2333444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (779)
.+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444444443321 1123333334444444444444444333
No 168
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.9e-17 Score=135.10 Aligned_cols=84 Identities=14% Similarity=0.300 Sum_probs=73.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++|+++|+++|++||.|..+.+..+ ..+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR-MMTGRMRGQAFITFPNKEIAWQALHLV--NGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE-EECSSSCSEEEEECSSHHHHHHHHHHS--TTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEE-cCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 3469999999999999999999999999954433333 337899999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987753
No 169
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=171.39 Aligned_cols=151 Identities=15% Similarity=0.268 Sum_probs=118.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRR---SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651 (779)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 651 (779)
-..+|++||++|++.|++++|..+|++|.+ .|+.||+.+||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345799999999999999999999987764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 004006 652 IMHGYASLGD-TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN------TFVYNILID 724 (779)
Q Consensus 652 li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 724 (779)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+.+ +++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 4788899999999999999999998887665543 33333333 2233333 334455556
Q ss_pred HHHhcC
Q 004006 725 GWARRG 730 (779)
Q Consensus 725 ~~~~~g 730 (779)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 665554
No 170
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=1.2e-16 Score=133.36 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=71.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCee--EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.+.++|||+|||+++|+++|+++|++| .|. +|+|+.| +. |+++|||||+|.+.++|++|++. ++..|+||.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d-~~-GrsrGfaFV~F~~~e~A~~Al~~---~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD-PE-GKITGEAFVQFASQELAEKALGK---HKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC-SS-SSSCSEEEEEESSTTHHHHHHTT---TTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHH---CCCEECCEEE
Confidence 344699999999999999999999999 566 8999998 66 99999999999999999999974 7899999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|..+..+
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99987544
No 171
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=132.69 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=73.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCe----eEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPI----KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
.+.++|||+|||+++|+++|+++|++||.| .+|+|+.| + +|+++|||||+|.+.++|.+|++. ||..|+||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~-~gr~~G~aFV~F~~~~~A~~Al~~---~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-P-DGRPTGDAFVLFACEEYAQNALRK---HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-T-TSCEEEEEEECCSSHHHHHHHHTT---TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHh---CCCeeCCe
Confidence 456799999999999999999999999975 68999988 4 799999999999999999999973 89999999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|.|..+..+.
T Consensus 96 ~i~V~~a~~~e 106 (123)
T 2dha_A 96 YIELFRSTAAE 106 (123)
T ss_dssp EECCEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999886553
No 172
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=3.8e-13 Score=133.56 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
+...+..+...|...|++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566777778888888888888888887743 55677777777777 788888888888887764 677777
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 371 IIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMM 442 (779)
Q Consensus 371 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (779)
.+...|.. .+++++|+.+|+++.+.+ +..++..+..+|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77778877 788888888888877763 66777777777777 777777777777777754 45566666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 443 MDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (779)
Q Consensus 443 ~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (779)
...|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777766653 45566666666666 667777777776666653 2455555666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCC
Q 004006 515 GFLK----LKDWANVFAVFEDVMRDG 536 (779)
Q Consensus 515 ~~~~----~~~~~~a~~~~~~~~~~g 536 (779)
+|.+ .+++++|+..|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666665543
No 173
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.2e-16 Score=123.13 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=70.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++||.|.+++++ +|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQL--NGKEVKGKRINVE 76 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 44699999999999999999999999999999997 359999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998764
No 174
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.6e-16 Score=123.38 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=70.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|++.+ ||..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNL--HHYKLHGVNINVE 75 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHh--cCCccCCcEEEEE
Confidence 34699999999999999999999999999999987 589999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987753
No 175
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=5.2e-14 Score=145.25 Aligned_cols=248 Identities=8% Similarity=0.103 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 004006 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGN-MDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (779)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (779)
..|..+..++.+.|++++|+..|+++++.... +...|+.+..++...|+ +++|+..|++++..... +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 44555566666666677777777666665443 55666666667777775 77777777777766555 56666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS-LGDTGK 664 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~ 664 (779)
+...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++.+ +-+...|+.+..+|.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777777777777777776554 66777777777777777777777777777664 3456677777777777 444466
Q ss_pred H-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 004006 665 A-----FEYFTKLRNEGLELDVFTYEALLKACCKSG--RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG------- 730 (779)
Q Consensus 665 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 730 (779)
| +..|++++... +.+...|+.+..++...| ++++|++.++++ +.+ +.+...+..|+++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 6 47777777765 446777777777777777 577888888777 433 556677788888887764
Q ss_pred --CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHHh
Q 004006 731 --DVWEAADLMQQM-KQEGVQPD-VHTYTSFINACKC 763 (779)
Q Consensus 731 --~~~~A~~~~~~m-~~~g~~pd-~~~~~~l~~a~~~ 763 (779)
.+++|+++++++ .+ +.|+ ...|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 257888888887 54 3444 3456656555443
No 176
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=5.2e-14 Score=139.79 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGG 375 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~ 375 (779)
.+..+...+...|++++|+..|+++.+... .+...+..+..+|...|++++|++.|++.++.+..+ ....|..++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345567788888999999999999888743 255578888888888899999999988888743111 13347888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
|...|++++|+..|+++.+.... +..++..++.+|...|++++|++.|++..+.. +.+..++..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888899998888888887554 66788888888888888888888888887763 44566677777344445588888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGK---VSKALEVSKVMKSSG-IKHN------MKTYSMLINGFLKLKDWANV 525 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~a 525 (779)
++.|+++.+.... +...+..+..++...|+ +++|...++++.+.. -.++ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888775322 45667777777777777 777777777666531 0112 24556666667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 004006 526 FAVFEDVMRDGLKPDVVLYNN 546 (779)
Q Consensus 526 ~~~~~~~~~~g~~~~~~~~~~ 546 (779)
...|+++.+.... +...+..
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~ 260 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHhcCcc-HHHHHHH
Confidence 7777777665432 3434333
No 177
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.2e-16 Score=124.67 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=70.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc--CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
+.++|||+|||+.+|+++|+++|++| |.|..+++. +|||||+|.+.++|.+|+..| ||..++|+.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 82 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKAL--NGKVLDGSPIE 82 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHH--SSEEETTEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHh--CCCEeCCcEEE
Confidence 44699999999999999999999999 899988775 679999999999999999999 99999999999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.+++++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987753
No 178
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=128.40 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=71.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN------PPGFAFVEFEDPRDAEDAVRGL--DGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS------SSSEEEEECSSHHHHHHHHHHH--HHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCEEEEEECCHHHHHHHHHHH--CCCeECCcEEEEEEc
Confidence 48999999999999999999999999999999875 6899999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
+++.
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8765
No 179
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=6.4e-13 Score=131.90 Aligned_cols=224 Identities=12% Similarity=-0.040 Sum_probs=161.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYG 405 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (779)
+..++..+...|...|++++|++.|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45667777777778888888888888877743 56677777777877 888888888888887764 667777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 004006 406 NIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCL 477 (779)
Q Consensus 406 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 477 (779)
.+..+|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777764 56677777777777 777777777777777754 45566667
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 478 INLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 478 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
..+|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776 777777777777777653 45666666777777 777777777777776653 2455666666
Q ss_pred HHHh----CCCHHHHHHHHHHHHHcC
Q 004006 550 AFCG----MGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 550 ~~~~----~g~~~~A~~~~~~~~~~~ 571 (779)
+|.+ .+++++|++.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 667777777777666654
No 180
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.3e-16 Score=136.22 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=74.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++|| |.+|+|+.| +. |+++|||||+|.+.++|++|+ .+ |+..|+||.|+|.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d-~~-g~srGfaFV~F~~~e~A~~Al-~~--~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG-PD-GRVTGEADVEFATHEEAVAAM-SK--DRANMQHRYIELF 118 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS-SS-SCSSCCCEEECSHHHHHHHHT-TC--CSCSSSSCCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC-CC-CCCceEEEEEeCCHHHHHHHH-hh--CCCEECCEEEEEE
Confidence 346999999999999999999999999 779999998 65 999999999999999999999 67 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
.+..+..
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9876643
No 181
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=121.98 Aligned_cols=76 Identities=22% Similarity=0.456 Sum_probs=70.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGL--DNTEFQGKRMHVQ 77 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEE
Confidence 44699999999999999999999999999999997 359999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987743
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=3e-16 Score=128.44 Aligned_cols=80 Identities=21% Similarity=0.476 Sum_probs=74.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||||||+++++++|+++|++||.|.+|+|+.| + +|+++|||||+|.+.++|.+|+. +|..++|+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-R-TGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-T-TSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHh----CCCeECCEEEEEE
Confidence 3469999999999999999999999999999999999 6 89999999999999999999986 7999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++..+.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 986553
No 183
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=5.5e-16 Score=124.95 Aligned_cols=78 Identities=22% Similarity=0.479 Sum_probs=70.8
Q ss_pred cccceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 149 RQEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.+.++|||||||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.| ||..+.|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECE--SQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHH--TCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHc--CCCeeCCcEEE
Confidence 4556999999999 99999999999999999999884 789999999999999999999 99999999999
Q ss_pred EEecCCcchh
Q 004006 228 VKLDDGRRLK 237 (779)
Q Consensus 228 v~~~~~~~~~ 237 (779)
|++++++...
T Consensus 77 V~~a~~~~~~ 86 (96)
T 2kvi_A 77 LEVSSSNARP 86 (96)
T ss_dssp EEEEECCCC-
T ss_pred EEEcCcCCCC
Confidence 9999766543
No 184
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.8e-15 Score=125.62 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=69.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcce-EEEEeCCHHHHHHHHHHhhhCCceeec--eEEEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF-GFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v~ 229 (779)
+|||+||++.+|+++|+++|++||.|.+|+|+.+ .+|| |||+|.+.++|.+|++.| ||..|.| +.|+|+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~------~~gfqAFVef~~~~~A~~Ai~~L--nG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE------TTEEEEEEEESCHHHHHHHHHHH--TTCEEETTEEEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHc--CCCeecCCCcEEEEE
Confidence 8899999999999999999999999999988764 2688 999999999999999999 9999988 999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
|++++.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998774
No 185
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3.6e-15 Score=123.61 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=68.2
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcce-EEEEeCCHHHHHHHHHHhhhCCceeec--eEEEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF-GFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v~ 229 (779)
.|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.| ||..|.| +.|+|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~L--nG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAAL--NGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHH--TTCCCBTTBSEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHh--CCCEecCCCeEEEEE
Confidence 6899999999999999999999999999999642 386 999999999999999999 9999987 699999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998874
No 186
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1e-15 Score=125.32 Aligned_cols=77 Identities=22% Similarity=0.446 Sum_probs=70.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.| ||..|+|+.|+|.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEM--NGKDLEGENIEIV 78 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHH--CCCccCCCEEEEE
Confidence 34699999999999999999999999999999886 469999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99776543
No 187
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=7.7e-16 Score=138.86 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=76.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.+ ||..|+|+.|+|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~-~g~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDIQ 162 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCC-T-TSSCSCCEEEEESCHHHHHHHHHHS--TTCBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCEeeEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 5 8999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98765
No 188
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=8.9e-12 Score=137.14 Aligned_cols=233 Identities=9% Similarity=-0.011 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAI-HIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDM 601 (779)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 601 (779)
+.+..+|++.+..-. -+...|-..+..+...|+.++|. .+|+......+. +...|...+....+.|++++|..+|+.
T Consensus 326 ~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-SAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445677888777533 37788888888888888888886 999988875432 455566777788888999999999998
Q ss_pred HHHCCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 004006 602 MRRSGC---------IP------------TVHTFNALILGLVEKRQMEKAIEILDEMTLA-GISPNEHTYTTIMHGYASL 659 (779)
Q Consensus 602 ~~~~~~---------~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 659 (779)
+++... .| ...+|...+....+.|..+.|..+|.++++. + ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 876310 12 1236777777777888899999999998875 2 22334444333333344
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 004006 660 -GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIP--RNTFVYNILIDGWARRGDVWEAA 736 (779)
Q Consensus 660 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 736 (779)
++.+.|..+|+..++. .+.+...+..+++.....|+.+.|..+|++....... .....|..++..=.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4589999999999887 4557777788888888899999999999998876421 13457788888888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 004006 737 DLMQQMKQEGVQPDVHTYTSFINAC 761 (779)
Q Consensus 737 ~~~~~m~~~g~~pd~~~~~~l~~a~ 761 (779)
++.+++.+. .|+......+++=|
T Consensus 562 ~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 562 TLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999885 44544444454433
No 189
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=2e-15 Score=119.05 Aligned_cols=73 Identities=22% Similarity=0.427 Sum_probs=62.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~v 228 (779)
..+|||||||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ + +|..+ +|+.|.|
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~------srGfaFV~F~~~~~A~~----~--~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP------FRAFAFVTFADDKVAQS----L--CGEDLIIKGISVHI 78 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS------CCSEEEEEESCHHHHHH----H--TTCEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC------CCCEEEEEECCHHHHHH----H--cCCCcccCCEEEEE
Confidence 459999999999999999999999999999999864 68999999999999883 4 67665 5999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998764
No 190
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=116.12 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=63.9
Q ss_pred eEEeccCCCcCChHH----HHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 153 KIFVGNLPNWIKKHL----VMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.|||+|||+.+++++ |+++|++|| .|.+| || |||||.|.+.++|.+|++.| ||..+.||+|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l--~G~~l~gr~i~ 77 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRM--ENEDVFGNRII 77 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHH--TTCCSSSSCCE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHh--cCCccCCceEE
Confidence 399999999999987 558999994 99987 33 99999999999999999999 99999999999
Q ss_pred EEecCCcc
Q 004006 228 VKLDDGRR 235 (779)
Q Consensus 228 v~~~~~~~ 235 (779)
|++|+.++
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998774
No 191
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.61 E-value=1.4e-15 Score=143.68 Aligned_cols=82 Identities=17% Similarity=0.377 Sum_probs=78.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.+ ||..+.|+.|++.++
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~--~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVRIMWS 92 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHh--hhhhcCCcccccccc
Confidence 49999999999999999999999999999999999 899999999999999999999999999 999999999999998
Q ss_pred CCcch
Q 004006 232 DGRRL 236 (779)
Q Consensus 232 ~~~~~ 236 (779)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 76643
No 192
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=122.03 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=69.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|+ ++|+++|+++|++||.|.+|+|... +|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-------RNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 82 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHT--TTEEETTEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC-------CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 3469999996 8999999999999999999998543 899999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9987653
No 193
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=119.79 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=68.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||.++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.| .||..++|++|+|+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l-~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVAAEKS-FNKLIVNGRRLNVK 82 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHTT-TTTCEETTEECCEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHHHHHh-cCCeeECCCEEEEE
Confidence 3459999999999999999999999999999999986 899999999999999999853 28899999999999
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 194
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.7e-13 Score=135.98 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=105.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDIYHMMMDGY 446 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 446 (779)
+...+..+...|++++|+..|+++.+..+. +..++..++.+|...|++++|++.|+++.+....++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334444445555555555555555444322 333444555555555555555555555544211111 11244455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVF 526 (779)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (779)
...|++++|+..|++..+.... +..++..+..+|...|++++|+..|++..+.. ..+...|..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443211 33455555555555555555555555554432 223444444441222233555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCC-CCC------cccHHHHHHHHHhcCCHHHHH
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGN---MDRAIHIVKEMQKERH-RPT------SRTFMPIIHGFARAGEMKRAL 596 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~~~~~~a~ 596 (779)
..|+++.+.... +...+..+..++...|+ +++|...|+++..... .++ ...|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555555554322 34444444455544444 4445555544443210 011 023333444444445555555
Q ss_pred HHHHHHHHC
Q 004006 597 EIFDMMRRS 605 (779)
Q Consensus 597 ~~~~~~~~~ 605 (779)
..|+++.+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555444443
No 195
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.6e-15 Score=131.03 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=70.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v~ 229 (779)
.+|||+||++.+|+++|+++|++||.|++|+|..+ +++|||||+|.+.++|.+|++.| ||..|.| +.|+|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~L--nG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHS--TTBCSSSSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHh--CCCEecCCCcEEEEE
Confidence 38999999999999999999999999999998754 24799999999999999999999 9999955 999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998774
No 196
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.8e-15 Score=119.69 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=69.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||||||+++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.+ ||..++|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEE
Confidence 34699999999999999999999999 99999885 34899999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98655
No 197
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=1.3e-15 Score=134.57 Aligned_cols=78 Identities=29% Similarity=0.574 Sum_probs=73.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||||||+++|+++|+++|++||.|.+|+|+.| ++|||||+|.+.++|.+|+..| ||..++|++|+|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN------PPGFAFVEFEDPRDAADAVREL--DGRTLCGCRVRVE 143 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHH--SSSCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999876 4899999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 198
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.2e-16 Score=137.25 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=72.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEE-----ecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-----IKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~-----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
++++|||||||+++|+++|+++|++||.|..+.+ ++. ..+|+++|||||+|.+.++|.+|+..| ||..|+|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 120 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEA--NGYVLFGK 120 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHH--TTBEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHh--CCCEeCCc
Confidence 4569999999999999999999999999876411 111 246999999999999999999999999 99999999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|+|++++++.
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997764
No 199
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=3.3e-15 Score=121.05 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=72.8
Q ss_pred ccceEEeccCCC-----cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 150 QEGKIFVGNLPN-----WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 150 ~~~~~~v~~l~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
++++|+|+|+.. +-++++|++.|++||.|.+|+|++++..+|+++|||||+|.+.++|.+|++.| ||..++||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l--nG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL--NGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH--TTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH--CCCEECCc
Confidence 456999999963 23689999999999999999999983345789999999999999999999999 99999999
Q ss_pred EEEEEecCCc
Q 004006 225 VLTVKLDDGR 234 (779)
Q Consensus 225 ~~~v~~~~~~ 234 (779)
.|+|.++...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998654
No 200
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=122.73 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=70.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEE-EecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVI-LIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+++|||||||+++++++|+++|++||.|.+++ ++.+ +.+| .|||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-~~~~----~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~ 87 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-SETA----VVNVTYSSKDQARQALDKL--NGFQLENFTLKVA 87 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-SSSE----EEEEEESSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCC----EEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 46999999999999999999999999999994 8877 5543 4999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99876
No 201
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7e-16 Score=123.77 Aligned_cols=78 Identities=23% Similarity=0.486 Sum_probs=69.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCC-eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC-ceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG-VEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g-~~~~~~~~~ 227 (779)
..++|||+|||+++|+++|+++|++||. |..+.+. . +|||||+|.+.++|.+|++.| || ..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~-------~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K-------SGYAFVDYPDQNWAIRAIETL--SGKVELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E-------TTEEEECCSCHHHHHHHHHHH--TTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C-------CCEEEEEECCHHHHHHHHHHc--cCCeeECCEEEE
Confidence 3459999999999999999999999999 5655553 2 899999999999999999999 99 999999999
Q ss_pred EEecCCcchh
Q 004006 228 VKLDDGRRLK 237 (779)
Q Consensus 228 v~~~~~~~~~ 237 (779)
|++++++..+
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999877533
No 202
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=3.6e-13 Score=131.96 Aligned_cols=201 Identities=12% Similarity=0.013 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+...|...|++++|+.+|+++.+.. ..+..++..+..+|...|++++|++.|+++++... .+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4567778888888999999999999888764 23677888888888888899999998888887643 367788888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
|...|++++|+++|+++...+..+ +...+..++.+|...|++++|++.|+++.+.. +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887721122 45677777788888888888888888877764 3456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
|+..|+++.+... .+...+..+..++.+.|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777766432 24556666677777777777777777777664
No 203
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=1.4e-11 Score=135.50 Aligned_cols=429 Identities=8% Similarity=0.027 Sum_probs=301.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
.+.+..|.+.+..||. |...|..++..+.+.|.++.++.+|++++.. +..+...|...+..-.+
T Consensus 49 ~d~i~~lE~~l~~np~---------------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~ 112 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT---------------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFD 112 (679)
T ss_dssp SCHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHh
Confidence 4567778888999997 7778899999999999999999999999987 35577889999999999
Q ss_pred cCC---hHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHccCCH--------HHHHHHHHHHHHc-CC-CC-ChhhHHHHH
Q 004006 344 GRD---MEEALSCVRKMKEEG-IEMSLVTYSIIVGGFAKMGNA--------EAADHWFEEAKER-HA-TL-NAIIYGNII 408 (779)
Q Consensus 344 ~g~---~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~-~~~~~~~l~ 408 (779)
.++ ++.+.++|++.+... ..++...|..-+....+.++. +...++|+++... |. .+ ....|...+
T Consensus 113 ~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp C--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred hCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 999 999999999998863 137888998888776665553 3455888887753 33 33 346777776
Q ss_pred HHHH---------hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC-
Q 004006 409 YAQC---------QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-------------IGNEEKCLIVFERLKEC- 465 (779)
Q Consensus 409 ~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~- 465 (779)
.... ..++++.+..+|++++......-..+|......-.. ..+++.|...+.++...
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5543 234577889999998853211112333222211111 12334455555554321
Q ss_pred -CCC---------------C-----C---HhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 466 -GFS---------------P-----S---IISYGCLINLYTKIG-------KVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (779)
Q Consensus 466 -g~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (779)
++. | + ...|...+..--..+ ..+....+|++..... ..+...|...+.
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~ 351 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMAN 351 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 211 0 0 134555554433322 1234566788887753 447888888888
Q ss_pred HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------CCCC---------
Q 004006 515 GFLKLKDWANVF-AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER---------HRPT--------- 575 (779)
Q Consensus 515 ~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~--------- 575 (779)
.+...|+.++|. .+|++....- ..+...|-..+....+.|++++|..+|+.++... ..|+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 888889999997 9999998753 3467778888888999999999999999988641 0121
Q ss_pred ---cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 576 ---SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK-RQMEKAIEILDEMTLAGISPNEHTYTT 651 (779)
Q Consensus 576 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~~~~~~~~~ 651 (779)
...|...+....+.|..+.|..+|.++++.........|...+..-.+. ++.+.|..+|+..++. ..-+...|..
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 2357777888888999999999999998761112334444333333444 4589999999998876 3446667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
.+......|+.+.|..+|++.+..... -....|..++..-...|+.+.+..+.+++.+..
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888788899999999999999887532 245678888888889999999999999998764
No 204
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.7e-13 Score=131.11 Aligned_cols=200 Identities=16% Similarity=0.041 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (779)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 621 (779)
..+..+...+...|++++|+.+|+++...... +...+..+...|...|++++|+.+|+++.+.... +...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 44556666666677777777777766665433 4556666677777777777777777777765433 566777777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 004006 622 VEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSA 700 (779)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (779)
...|++++|+.+++++...+..+ +...+..+...|...|++++|..+++++.+.. +.+...+..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877622233 45667777788888888888888888888765 44677888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 701 LAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
..+++++.+.. +.+...+..++..+.+.|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888887754 567777888888888888888888888888874
No 205
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=6.2e-14 Score=139.41 Aligned_cols=121 Identities=12% Similarity=-0.105 Sum_probs=66.4
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH
Q 004006 308 RRGDMHRARQTFENMRARGIE---PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (779)
..|++++|+..|+++.+.... .+..+|..+..+|...|++++|+..|+++++... .+..+|..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 445566666666666554211 1234555555666666666666666666655432 245555566666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
|+..|+++.+.... +..++..++.+|.+.|++++|++.|+++.+.
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666665554332 4455555555555555555555555555554
No 206
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=126.06 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=68.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCC---CCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF---EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
..++|||||||+++|+++|+++|++||.|. +.++.+ +.+ |+++|||||+|.+.++|++|++.+ + .++|+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~-~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~--~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHK-AESKSYFPPKGYAFLLFQEESSVQALIDAC--L--EEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTS-SSSCCCSCTTSEEEECCSSHHHHHHHHHHS--E--EETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeec-CCCCCCCCcccEEEEEECCHHHHHHHHHhh--h--hcCCcEE
Confidence 346999999999999999999999999999 888888 666 899999999999999999999987 5 3788888
Q ss_pred EEEecC
Q 004006 227 TVKLDD 232 (779)
Q Consensus 227 ~v~~~~ 232 (779)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 887553
No 207
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=2.8e-15 Score=124.39 Aligned_cols=74 Identities=23% Similarity=0.516 Sum_probs=69.2
Q ss_pred cceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.++|||+|||++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGE--NGRVLAGQTLDIN 95 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHH--TTCEETTEECCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 359999999999 999999999999999999988 2799999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
No 208
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=120.82 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=68.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||||||+++|+++|+++|++||.|.+| +.+ +.+|+ ||||+|.+.++|.+|++ + ||..|+|+.|+|.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~-~~~g~---~afV~f~~~~~a~~ai~-l--~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMD-KDKGV---FAIVEMGDVGAREAVLS-Q--SQHSLGGHRLRVRP 78 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EEC-SSSCC---EEEEEESSHHHHHHHHT-C--SCCEETTEECCCBC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEc-CCCCc---EEEEEECCHHHHHHHHh-c--CCeEECCEEEEEEE
Confidence 3599999999999999999999999999987 555 55665 99999999999999999 8 99999999999998
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.++.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 87654
No 209
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=5.4e-14 Score=139.85 Aligned_cols=249 Identities=10% Similarity=-0.031 Sum_probs=190.0
Q ss_pred HHccCChHHHHHHHHHHHHcCC---CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004006 341 YAVGRDMEEALSCVRKMKEEGI---EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (779)
+...|++++|+..|+++++... +.+..++..++..|...|++++|+..|+++.+.... +..+|..++.+|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3456889999999999987532 124678888999999999999999999999887654 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 418 ERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 418 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
++|++.|+++.+.. +.+..++..+..+|...|++++|+..|+++.+.. |+......++..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999874 4467888889999999999999999999988753 44444455556667779999999999777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 004006 498 KSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP---DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (779)
Q Consensus 498 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (779)
.... ..+...+ .++..+...++.++|+..+.++.+..... +..++..+..+|.+.|++++|...|+++......
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 247 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH- 247 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-
Confidence 7653 2333344 36777778888899999988876542211 1467888889999999999999999999886432
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHH
Q 004006 575 TSRTFMPIIHGFARAGEMKRALEIF 599 (779)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~a~~~~ 599 (779)
.+.....++...|++++|++.+
T Consensus 248 ---~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 ---NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---TCHHHHHHHHHHHHHHHC----
T ss_pred ---hHHHHHHHHHHHHHHHhhHHHH
Confidence 2344455777888888888776
No 210
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=5.7e-15 Score=153.38 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=79.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.| +.+|+++|||||+|.+.++|.+||..| ||..|+|+.|+|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS-KRSGKPRGYAFIEYEHERDMHSAYKHA--DGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc-CCCCCccceEEEeeccHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987654
No 211
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.2e-13 Score=134.49 Aligned_cols=201 Identities=14% Similarity=0.053 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
....|..+...+...|++++|+.+|+++.+.. ..+...+..+..+|...|++++|++.|+++++... .+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45567778888889999999999999998764 33677888888889999999999999998887643 36788888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
.|...|++++|+..|+++.+.... +..++..++.+|.+.|++++|+++++++.+.. +.+..++..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 888899999999999888877543 67778888888888888888888888887764 4456677777777777788888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
|+..|+++.+... .+..++..+..+|.+.|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8877777766532 24566777777777777777777777777664
No 212
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=7.6e-13 Score=126.88 Aligned_cols=203 Identities=10% Similarity=-0.009 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..++..|...|++++|+.+|+++.+.. ..+...+..+..+|...|++++|.+.|+++++.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34567777888888888888888888887764 2356778888888888888888888888887764 236777788888
Q ss_pred HHHcc-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 375 GFAKM-GNAEAADHWFEEAKERHATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 375 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
.|... |++++|+..|+++.+....+ +...+..++.+|...|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887721111 35667777777777888888888877777653 33466666777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
++|...|+++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777665432124555666666666777777777776666543
No 213
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=5.3e-15 Score=134.63 Aligned_cols=82 Identities=20% Similarity=0.414 Sum_probs=78.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+|||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD-YKTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEe-CCCCccceEEEEEECCHHHHHHHHHhc--CCCEeCCcEEEEEe
Confidence 469999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.+..
T Consensus 80 ~~~~~ 84 (168)
T 1b7f_A 80 ARPGG 84 (168)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 87654
No 214
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.1e-12 Score=125.71 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILG 620 (779)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 620 (779)
...+..+...+...|++++|...|+++...... +...+..+...|...|++++|..+++++.+.... +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 345555666666666666666666666655433 4455666666666777777777777776665432 56667777777
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 004006 621 LVEK-RQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (779)
Q Consensus 621 ~~~~-~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (779)
|... |++++|+.+++++.+.+..++ ...+..+..+|...|++++|+.+++++.+.. +.+...+..++.+|...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777776222233 4567777777778888888888888877764 345777777888888888888
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 699 SALAVTKEMSAQKIP-RNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
+|..+++++.+.. + .+...+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888877654 4 56667777777778888888888888887653
No 215
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=4.4e-14 Score=140.42 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=70.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~v 228 (779)
.+++|||+||+..+++++|+++|++||.|.+|+++.+ + +|||||+|.+.++|.+|++.| ||..++ |+.|+|
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-~-----~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~v 277 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-R-----HDIAFVEFDNEVQAGAARDAL--QGFKITQNNAMKI 277 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC-C-----CcEEEEEeCCHHHHHHHHHHc--CCcEeCCCCEEEE
Confidence 3469999999999999999999999999999999976 2 599999999999999999999 999999 999999
Q ss_pred EecC
Q 004006 229 KLDD 232 (779)
Q Consensus 229 ~~~~ 232 (779)
+|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9985
No 216
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=5.5e-15 Score=117.01 Aligned_cols=71 Identities=30% Similarity=0.606 Sum_probs=66.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc----C-------CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF----G-------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
+.++|||||||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+ ||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A~-~l--~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AF--DG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHHG-GG--TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHHH-hc--CC
Confidence 44699999999999999999999999 8 8999999876 899999999999999999 88 99
Q ss_pred ceeeceEEEEEe
Q 004006 219 VEFHGRVLTVKL 230 (779)
Q Consensus 219 ~~~~~~~~~v~~ 230 (779)
..++|+.|+|+.
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999973
No 217
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=2.4e-13 Score=132.28 Aligned_cols=128 Identities=14% Similarity=0.123 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004006 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693 (779)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (779)
+..+...|...|++++|+.+++++.+.. ..+...+..+...|...|++++|+.+++++.+.. +.+...+..++.+|..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333333333344444444443333322 1223333334444444444444444444444332 2233344444444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 694 SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.|++++|..+++++.+.. +.+...+..++.+|.+.|++++|.++++++.+
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444444444444444332 23334444444444444444444444444444
No 218
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=8.9e-15 Score=133.06 Aligned_cols=82 Identities=20% Similarity=0.450 Sum_probs=78.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|++|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTL--NGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHc--CCCccCCceEEEEe
Confidence 369999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.+..
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 87664
No 219
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=5.2e-15 Score=123.40 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=66.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE----
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV---- 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~---- 225 (779)
..++|||+|||+++|+++|+++|++||.|.+|+|+.| |||||+|.+.++|.+|++.| ||..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHh--CCCEECCcEeeeE
Confidence 3469999999999999999999999999999999864 99999999999999999999 999999998
Q ss_pred -EEEEecCCc
Q 004006 226 -LTVKLDDGR 234 (779)
Q Consensus 226 -~~v~~~~~~ 234 (779)
|+|..+.++
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 777776554
No 220
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.9e-15 Score=132.88 Aligned_cols=79 Identities=20% Similarity=0.393 Sum_probs=76.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+|||..+++++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|.+
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRINW 163 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEEEe
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
|+
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 221
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=7.5e-15 Score=138.57 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=75.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+||++.+|+++|+++|++||.|.+|+|++| + +.++|||||+|.+.++|.+|++.| ||..|+|++|+|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d-~--~~~~g~~fV~f~~~~~a~~Ai~~l--ng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T--TEEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc-C--CCCceEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4468999999999999999999999999999999987 3 457999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 177 ~a~~~~ 182 (213)
T 4f02_A 177 RFKSRK 182 (213)
T ss_dssp ECCCHH
T ss_pred EcCCCc
Confidence 998764
No 222
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=5.1e-15 Score=134.49 Aligned_cols=81 Identities=31% Similarity=0.547 Sum_probs=76.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||..+++++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|++ + ||..++|++|+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-C--CCEEeCCeEEEEe
Confidence 4569999999999999999999999999999999999 8899999999999999999999997 7 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++.++
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99876
No 223
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=1.1e-14 Score=133.16 Aligned_cols=79 Identities=27% Similarity=0.543 Sum_probs=75.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||.++|+++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQR 170 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCSEEEEEEEEESSTTHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHc--CCCEECCeEEEEEe
Confidence 459999999999999999999999999999999998 789999999999999999999999999 99999999999998
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 224
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=9.1e-15 Score=122.57 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=69.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+++|||||+ ++|+++|+++|++||.|.+|++... +|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~-------kg~aFV~f~~~~~A~~Ai~~l--ng~~~~g~~l~V~ 106 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-------RNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 106 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 3459999996 7999999999999999999999644 899999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987753
No 225
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.2e-13 Score=146.44 Aligned_cols=276 Identities=13% Similarity=0.076 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCCHhH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKEE----G-IEMSLVT 368 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~ 368 (779)
.+..+...+...|++++|+.+|+++.+.+.. +. .+|..+..+|...|++++|+..|++.++. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4556778889999999999999999987432 33 46888889999999999999999988653 1 1224567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRN-----------------MERAEALVRD 426 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 426 (779)
+..+...|...|++++|+..|+++.+.. ......++..++.+|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8888889999999999999998876641 11134467777777777887 6777666666
Q ss_pred HHHcC----C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 427 MEEEG----I-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 427 ~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
..+.. . .....++..+...|...|++++|+..|++..+.... .+..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 54321 0 011224444555555555555555555554432100 0000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--
Q 004006 501 GIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR-- 573 (779)
Q Consensus 501 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 573 (779)
.....+..+...|...|++++|...|++..+.... ....++..+..+|...|++++|...|++.......
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 00113344444444445555554444444332100 01234445555555555555555555554432110
Q ss_pred ---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 574 ---PTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (779)
Q Consensus 574 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 605 (779)
....++..+...|.+.|++++|...|++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01234555666666667777777766666654
No 226
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.8e-14 Score=133.86 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=71.7
Q ss_pred ccceEEeccCC-CcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++||||||+ +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.| ||..+.|++|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS------KPGAAMVEMADGYAVDRAITHL--NNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT------STTCEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC------CCCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 45699999999 89999999999999999999999876 2799999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.+++..
T Consensus 75 ~~s~~~ 80 (205)
T 3tyt_A 75 CVSKQP 80 (205)
T ss_dssp EECSCS
T ss_pred EEccCC
Confidence 998654
No 227
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=3e-13 Score=142.96 Aligned_cols=203 Identities=18% Similarity=0.103 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CC
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GIE-MS 365 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~ 365 (779)
....+..+...+...|++++|+..|+++.+.+.. + ..++..+...|...|++++|...|++.++. +.. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4556677888899999999999999999887432 3 356788888899999999999999887543 111 12
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------hHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRN--------------------MERA 420 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A 420 (779)
..++..+...|...|++++|+..|+++.+.... .+ ..++..++.+|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 557788888888999999999988887664211 01 3367777777777777 7777
Q ss_pred HHHHHHHHHcC--C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHHcCCHHHH
Q 004006 421 EALVRDMEEEG--I---DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PS----IISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 421 ~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A 490 (779)
++.+++..+.. . .....++..+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 77766654421 0 001234455555556666666666655555432000 01 12444455555555555555
Q ss_pred HHHHHHHH
Q 004006 491 LEVSKVMK 498 (779)
Q Consensus 491 ~~~~~~m~ 498 (779)
...+++..
T Consensus 247 ~~~~~~al 254 (406)
T 3sf4_A 247 SEYYKKTL 254 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 228
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=3.7e-14 Score=132.93 Aligned_cols=83 Identities=25% Similarity=0.498 Sum_probs=79.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||..+++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQ 189 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC-TTTCSEEEEEEEEESSSSHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 190 ~a~~~~ 195 (198)
T 2yh0_A 190 RASVGA 195 (198)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998774
No 229
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=1.9e-14 Score=137.11 Aligned_cols=85 Identities=21% Similarity=0.385 Sum_probs=80.2
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
....++|||+|||..+|+++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~i~ 198 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAVSSM--NLFDLGGQYLR 198 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBCSSSBCE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHHc--cCCEeCCcEEE
Confidence 345679999999999999999999999999999999999 889999999999999999999999999 99999999999
Q ss_pred EEecCCcc
Q 004006 228 VKLDDGRR 235 (779)
Q Consensus 228 v~~~~~~~ 235 (779)
|.++.++.
T Consensus 199 V~~a~~~~ 206 (216)
T 2qfj_A 199 VGKAVTPP 206 (216)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99998764
No 230
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.53 E-value=2e-14 Score=134.59 Aligned_cols=83 Identities=28% Similarity=0.471 Sum_probs=75.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||||||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++. +|..++|+.|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~v 86 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEP 86 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT---CSCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhc---CCCEECCEEeee
Confidence 34569999999999999999999999999999999999 88999999999999999999999964 899999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++..+.
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987653
No 231
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=4e-12 Score=128.45 Aligned_cols=218 Identities=13% Similarity=0.130 Sum_probs=159.5
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-CCCC
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYA-------RRGDM-------HRARQTFENMRA-RGIE 328 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~ 328 (779)
+.|...|++++..+|. +...|..++..+. +.|++ ++|+.+|++.++ .. .
T Consensus 33 ~~a~~~~~~al~~~p~---------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-K 96 (308)
T ss_dssp HHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-T
T ss_pred HHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-c
Confidence 6788999999998887 6666777777665 45876 899999999987 33 2
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
-+...|..++..+.+.|++++|.++|++.++.... +.. +|..++..+.+.|++++|+.+|+++.+.... +...|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~ 174 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTA 174 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 25668888999999999999999999999885321 333 7888888888899999999999998876543 44555544
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHH
Q 004006 408 IYAQC-QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG-FSP--SIISYGCLINLYTK 483 (779)
Q Consensus 408 ~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~ 483 (779)
+.... ..|+.++|.++|++..+.. +.+...|..++..+.+.|++++|+.+|++..... +.| ....|..++..+.+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 43322 3688888888888777753 3456677777777777777777777777777752 233 34566677777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004006 484 IGKVSKALEVSKVMKSS 500 (779)
Q Consensus 484 ~g~~~~A~~~~~~m~~~ 500 (779)
.|+.+.|..+++++.+.
T Consensus 254 ~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 254 IGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777776654
No 232
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1e-14 Score=115.50 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=65.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc--eeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV--EFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~--~~~~~~~~ 227 (779)
+.++|||||||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|+++ ++. .++|+.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~------~~~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSL------CGEDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS------CCSCCEEECSCHHHHHHT------TTCEEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC------CCCEEEEEECCHHHHHHH------hcCCceeCCEEEE
Confidence 3469999999999999999999999999999999864 589999999999999753 444 45899999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.+++++..
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999987753
No 233
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=4.7e-13 Score=141.47 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGI-SPN----EHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GL-ELDV 681 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~ 681 (779)
.++..+...|...|++++|..++++..+... ..+ ..++..+...|...|++++|..++++.++. +. ....
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 3445555556666666666666655443210 011 345556666666666666666666665543 10 1123
Q ss_pred HHHHHHHHHHHHcCCh
Q 004006 682 FTYEALLKACCKSGRM 697 (779)
Q Consensus 682 ~~~~~l~~~~~~~g~~ 697 (779)
.++..+...+...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 4556666666666654
No 234
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.3e-14 Score=133.40 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=71.0
Q ss_pred cccceEEeccCCCcC---------ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc
Q 004006 149 RQEGKIFVGNLPNWI---------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~ 219 (779)
...++||||||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|+++| ||.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-------kG~AFV~F~~~~~Ae~A~~am--~g~ 202 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-------KNCGFVKFKYQANAEFAKEAM--SNQ 202 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHHH--TTC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-------CCEEEEEeCCHHHHHHHHHHh--CCC
Confidence 345699999999998 79999999999999999999976 899999999999999999999 999
Q ss_pred ee------------eceEEEEEecCCc
Q 004006 220 EF------------HGRVLTVKLDDGR 234 (779)
Q Consensus 220 ~~------------~~~~~~v~~~~~~ 234 (779)
.| +|+.|.|.||+..
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EEeccccccccccCCCCEEEEEEccCC
Confidence 99 9999999999765
No 235
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=3.9e-13 Score=142.45 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=58.0
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCh
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA----IIYGNIIYAQCQTRNMERAEALVRDMEEEG-----IDAPI 436 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~ 436 (779)
...+..+...+...|++++|+..|+++.+.... +. .++..++.+|...|++++|++.|++..+.. .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 444556666777777777777777777776433 32 356667777777777777777777665431 01122
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 437 DIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
.++..+...|...|++++|+..|++..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 236
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=2.6e-14 Score=131.00 Aligned_cols=80 Identities=15% Similarity=0.286 Sum_probs=72.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++||.|.+|+|.++ . +|+++|||||+|++.++|.+|+..+ +..++|+.|+|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~-~~~~kG~aFVeF~~~e~A~~A~~~~---~~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-L-HKAFKGSIFVVFDSIESAKKFVETP---GQKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC-T-TCCEEEEEEEEESSHHHHHHHHHCT---TCEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHhC---CCeECCEEEEEE
Confidence 4569999999999999999999999999999999997 4 4999999999999999999999765 569999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++.-
T Consensus 183 ~~~~y 187 (193)
T 2voo_A 183 FKDDY 187 (193)
T ss_dssp ETTTC
T ss_pred EhHHH
Confidence 87654
No 237
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=5.2e-13 Score=136.94 Aligned_cols=277 Identities=15% Similarity=0.101 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHh
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GIE-MSLV 367 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~ 367 (779)
..+......+...|++++|+.+|+++.+.... + ...+..+...|...|++++|++.+++.++. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556778888999999999999999887432 3 357888889999999999999999887643 111 1356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------hHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRN--------------------MERAEA 422 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 422 (779)
++..+...|...|++++|+..|+++.+.... .+ ..++..++.+|...|+ +++|++
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7788888899999999999998887664211 11 3367777778888888 777777
Q ss_pred HHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 423 LVRDMEEE----GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG----FS-PSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 423 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~-~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
.+++.... +. .....++..+...|...|++++|+..+++..+.. .. ....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 10 0112345555556666666666666665554320 00 001244445555555555555555
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004006 493 VSKVMKSSGIK-HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 493 ~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 571 (779)
.+++..+.... .+.. ....++..+...+...|++++|...++++....
T Consensus 245 ~~~~al~~~~~~~~~~-------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRA-------------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchh-------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 55544321000 0000 002334444455555555555555555443321
Q ss_pred CC-----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 572 HR-----PTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (779)
Q Consensus 572 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 605 (779)
.. ....++..+...|.+.|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 01224445555666666666666666666553
No 238
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.50 E-value=3.2e-14 Score=135.50 Aligned_cols=86 Identities=24% Similarity=0.411 Sum_probs=76.9
Q ss_pred hccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 147 ~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.....++|||+|||.++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~l 100 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQM--NSVMLGGRNI 100 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHH--SSCCCC-CCC
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHc--cCCeeCCeeE
Confidence 3345579999999999999999999999999999999998 889999999999999999999999999 9999999999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+|.++....
T Consensus 101 ~v~~~~~~~ 109 (216)
T 2qfj_A 101 KVGRPSNIG 109 (216)
T ss_dssp EEECCSCCG
T ss_pred EEecCCCcc
Confidence 999886654
No 239
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=3.1e-14 Score=129.32 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=75.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||||||+++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD-PATGRSRGFGFLSFEKPSSVDEVVK----TQHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCC-TTTSSCCSCEEEEESSTHHHHHHHH----SCCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEC-CCCCCccceEEEEEccHHHHHHHHh----cccccCCeEcccc
Confidence 4569999999999999999999999999999999999 8899999999999999999999997 4779999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.++.
T Consensus 77 ~~~~~~ 82 (167)
T 2cjk_A 77 RAIPRD 82 (167)
T ss_dssp ECCCHH
T ss_pred cccchh
Confidence 987653
No 240
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=7.4e-13 Score=142.25 Aligned_cols=194 Identities=10% Similarity=-0.032 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDM-HRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+...|..+...|...|++ ++|+..|+++++... .+...|..+..+|...|++++|++.|++.++.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 555666667777777777 777777777766532 245667777777777777777777777776643 4556666777
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCC---
Q 004006 374 GGFAKM---------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT--------RNMERAEALVRDMEEEGID--- 433 (779)
Q Consensus 374 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--- 433 (779)
.+|... |++++|+..|+++.+.... +...|..++.+|... |++++|++.|++..+.+ +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 777776 7777777777777666443 566666677776666 66777777776666653 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004006 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (779)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (779)
.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|++.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666666666654322 4445566666666666666666544
No 241
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=6e-12 Score=116.37 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..|...|.+.|++++|+..|++.++.+.. +..++..+..+|.+.|++++|+..++....... -+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 4566777788888888888888888887776432 666777777778888888888888877776543 35667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
.+...++++.|...+.++...... +..++..++.+|.+.|++++|++.|++..+.+ +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 777777888888777777776444 66677777777777777777777777777664 4456666777777777777777
Q ss_pred HHHHHHHHHHC
Q 004006 455 CLIVFERLKEC 465 (779)
Q Consensus 455 a~~~~~~~~~~ 465 (779)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777776654
No 242
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.49 E-value=5.3e-14 Score=131.65 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=74.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|..|+++.| +.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|.|.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~---~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQ---KYHTVNGHNCEVRK 179 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHC---SCCEETTEECEEEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec-CCCCCccceEEEEECCHHHHHHHHHh---CCcEECCEEEEEEe
Confidence 369999999999999999999999999999999999 88999999999999999999999964 79999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
+.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9877543
No 243
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=5.5e-14 Score=127.85 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=74.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v 228 (779)
.++|||+|||..+++++|+++|++||.|..+++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++| ++|+|
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD-KLTGRPRGVAFVRYNKREEAQEAISAL--NNVIPEGGSQPLSV 165 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCEE
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--cCCEecCCCeEEEE
Confidence 459999999999999999999999999999999998 778999999999999999999999999 9999987 99999
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 244
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6.1e-14 Score=127.33 Aligned_cols=80 Identities=23% Similarity=0.479 Sum_probs=74.1
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||+|||.++|+++|+++|++||.|.+++++.+ + +|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~-~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-K-NNKNVNYAFVEYHQSHDANIALQTL--NGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECC-C-C-CCEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCCCCEEEEEeCCHHHHHHHHHHc--CCCccCCCeeEEEEc
Confidence 38999999999999999999999999999999998 4 4889999999999999999999999 999999999999998
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
.+..
T Consensus 77 ~~~~ 80 (166)
T 3md3_A 77 FQSQ 80 (166)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
No 245
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=2.5e-14 Score=115.86 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=64.7
Q ss_pred eccCCCcCChHHHHHHH------------hccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 156 VGNLPNWIKKHLVMEFF------------RQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 156 v~~l~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
++||++.+++++|++.| ++||.|.+|+|+++ + +|+++|||||+|.+.++|.+|+..| ||..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~-~-~~~~~G~~fV~f~~~~~A~~A~~~l--ng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-L-GDHLVGNVYVKFRREEDAEKAVIDL--NNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS-S-SSSSEEEEEEEESCHHHHHHHHHHH--TTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC-C-CCCccEEEEEEECCHHHHHHHHHHH--CCCEECC
Confidence 56788888888777666 99999999999987 4 4899999999999999999999999 9999999
Q ss_pred eEEEEEec
Q 004006 224 RVLTVKLD 231 (779)
Q Consensus 224 ~~~~v~~~ 231 (779)
|+|+|+++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99999986
No 246
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1e-12 Score=134.67 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAG----I-SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 675 (779)
.++..+...|...|++++|..++++..+.. . .....++..+...|...|++++|..+++++.+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345555566666666666666666554321 0 011335566667777777777777777777654
No 247
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=2.4e-11 Score=122.76 Aligned_cols=217 Identities=9% Similarity=0.032 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-------cCCh-------HHHHHHHHHHHH-cCCCCCHhHHHHHHHHHH
Q 004006 313 HRARQTFENMRARGIEPTLHVYTNLIHAYAV-------GRDM-------EEALSCVRKMKE-EGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~ 377 (779)
++|+.+|+++++.. ..+...|..++..+.. .|++ ++|..+|++.++ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56777777777653 2356667666666543 3554 666666666665 22 224456666666666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT-IIGNEEKC 455 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 455 (779)
+.|++++|+.+|+++.+..+. +.. +|..++..+.+.|++++|..+|++..+.+ +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666654322 222 56666666666666666666666665543 222333332222211 23555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG-IKH--NMKTYSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
..+|++.++... -+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555444311 134444444444545555555555555544431 122 2334444444444444444444444444
Q ss_pred HH
Q 004006 533 MR 534 (779)
Q Consensus 533 ~~ 534 (779)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 248
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.47 E-value=9e-14 Score=126.32 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=73.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE--EE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV--LT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~--~~ 227 (779)
..++|||+|||..+++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+. |+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPIT 163 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHh--cCCccCCCccceE
Confidence 3458999999999999999999999999999999998 788999999999999999999999999 999999975 88
Q ss_pred EEec
Q 004006 228 VKLD 231 (779)
Q Consensus 228 v~~~ 231 (779)
|+||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8775
No 249
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1e-11 Score=114.78 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=118.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMH 654 (779)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 654 (779)
+...|..+...|.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|+..+....... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445666667777777777777777777766543 56667777777777777777777777766553 345566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 655 GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWE 734 (779)
Q Consensus 655 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 734 (779)
.+...++++.+...+.++.... +.+...+..+..+|...|++++|+..++++.+.+ +.+...|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777664 4466777777777778888888888887777665 5567777777888888888888
Q ss_pred HHHHHHHHHH
Q 004006 735 AADLMQQMKQ 744 (779)
Q Consensus 735 A~~~~~~m~~ 744 (779)
|++.|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887776
No 250
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=1.7e-13 Score=111.03 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=69.6
Q ss_pred cceEEeccC--CCcCC--------hHHHHHHHhccCCeeEEEEecCCCCC--CCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 151 EGKIFVGNL--PNWIK--------KHLVMEFFRQFGPIKNVILIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 151 ~~~~~v~~l--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
++.|.+.|+ +.+.. +++|++.|++||.|.+|+|+++ +.+ ++++|||||+|.+.++|.+|++.| ||
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~-~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l--nG 81 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGL--TG 81 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCC-BTTBCCTTTTEEEEEESSHHHHHHHHHHH--TT
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEecc-CCCCCcCCcEEEEEEECCHHHHHHHHHHh--CC
Confidence 458888888 33433 3689999999999999999988 544 478999999999999999999999 99
Q ss_pred ceeeceEEEEEecCCc
Q 004006 219 VEFHGRVLTVKLDDGR 234 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~ 234 (779)
..++||.|+|.+....
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999997554
No 251
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=3e-12 Score=137.50 Aligned_cols=216 Identities=9% Similarity=-0.009 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 004006 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNM-DRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIF 599 (779)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 599 (779)
.+++++..++....... .+...+..+..++...|++ ++|++.|+++.+.... +...|..+..+|.+.|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46777777777665433 3677888888888888888 8888888888887655 5677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 004006 600 DMMRRSGCIPTVHTFNALILGLVEK---------RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL--------GDT 662 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~ 662 (779)
+++.+.. |+...+..+...|... |++++|+..|++.++.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888764 5567778888888888 88888888888887764 44577788888888887 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 663 GKAFEYFTKLRNEGLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (779)
Q Consensus 663 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (779)
++|+..|+++++.... .+...|..+..+|...|++++|...|+++.+.+ +.+...+..+..++...|++++|++.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888876421 477788888888888888888888888887765 5566778888888888888888887665
Q ss_pred HH
Q 004006 741 QM 742 (779)
Q Consensus 741 ~m 742 (779)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 252
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=1.7e-13 Score=125.38 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=71.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||..+|+++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~ 169 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSLY 169 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE------CSSSSCCSEEEEECSSHHHHHHHHHHH--TEEEETTEEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe------cCCCCCceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 45699999999999999999999999988765 356899999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99876
No 253
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=1.7e-13 Score=125.56 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=72.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee---ceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~---~~~~ 226 (779)
..++|||+|||..+|+++|+++|++||.|.+++++++ + +|+++|||||+|.+.++|.+|++.| ||..+. |++|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~~~l 169 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-P-DGLSRGCAFVTFTTRAMAQTAIKAM--HQAQTMEGCSSPM 169 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTSCCCTTCSSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-C-CCCEEEEEEEEECCHHHHHHHHHHh--cCCcccCCCCCCe
Confidence 4569999999999999999999999999999999998 4 5999999999999999999999999 998876 4999
Q ss_pred EEEec
Q 004006 227 TVKLD 231 (779)
Q Consensus 227 ~v~~~ 231 (779)
+|.||
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 254
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=1.2e-13 Score=126.58 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=75.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCC--CCcceEEEEeCCHHHHHHHHHHhhhCCceee---ce
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GR 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~---~~ 224 (779)
+.++|||+|||+++|+++|+++|++||.|.+++++++ +.+| +++|||||+|.+.++|.+|++.+ ||..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRD-RSQNPPQSKGCCFVTFYTRKAALEAQNAL--HNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-CSSSSCEEEEEEEEEESSHHHHHHHHHHH--TTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCCCcceEEEEEECCHHHHHHHHHHh--cCcEEccCCcc
Confidence 3469999999999999999999999999999999998 7776 89999999999999999999999 998876 78
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.+.+.++....
T Consensus 79 ~~~~~~~~~~~ 89 (175)
T 3nmr_A 79 PIQMKPADSEK 89 (175)
T ss_dssp CCEEEECGGGC
T ss_pred ceEEccccccc
Confidence 88888876553
No 255
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=8.6e-12 Score=130.59 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=148.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CcccHH
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRD----GLKP-DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP------TSRTFM 580 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 580 (779)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|+..+++........ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556667777777777776553 1011 23456667777777777777777777665432111 123556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGCI-PT----VHTFNALILGLVEKRQMEKAIEILDEMTLA----GI-SPNEHTYT 650 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~~~~~~~~ 650 (779)
.+...|...|++++|+..|++..+.... .+ ..++..+...|...|++++|+..|++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6667777778888888777776643110 11 236777788888888888888888877651 22 23356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNE----GLELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILI 723 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (779)
.+...|...|++++|..++++.++. +-......+..+...|...|+ +++|..++++... .+.....+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 8888888888888888888887654 111122335667777777887 6677777766521 122234667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004006 724 DGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|...|++++|.+++++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888765
No 256
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=2.2e-13 Score=135.42 Aligned_cols=81 Identities=25% Similarity=0.469 Sum_probs=74.3
Q ss_pred cccceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 149 RQEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
.+.++|||+|||+++|+++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.+ ||..+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~ 80 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDK 80 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHh--cCCeeCCc
Confidence 445799999999999999976 8999999999999875 5889999999999999999999999 99999999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|+|.+++.+.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999986654
No 257
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=1.1e-11 Score=129.75 Aligned_cols=228 Identities=11% Similarity=0.038 Sum_probs=119.0
Q ss_pred HHHcCChHHHHHHHHHHHHC--CCCCC--HhhHHHHHHHH--HccCChHHHH-----------HHHHHHHHcCCCCC---
Q 004006 306 YARRGDMHRARQTFENMRAR--GIEPT--LHVYTNLIHAY--AVGRDMEEAL-----------SCVRKMKEEGIEMS--- 365 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~~~--- 365 (779)
+.+.+++++|..+++++.+. .+..| ...|..++..- .-.++++.+. ++++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45788999999999998664 22223 33334443321 1223333343 55555543210001
Q ss_pred -HhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----
Q 004006 366 -LVTYSIIVGGFAKMGNAEAADHWFEEAKERH----AT-LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-A---- 434 (779)
Q Consensus 366 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~---- 434 (779)
...+...+..+...|++++|+..|+++.+.- .. ....++..++.+|...|++++|++.+.+..+.... .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1122235666777888888888888876531 11 12356777777777777777777777766653100 0
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C
Q 004006 435 -PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PS----IISYGCLINLYTKIGKVSKALEVSKVMKSS----GI-K 503 (779)
Q Consensus 435 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~ 503 (779)
...+++.+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|++.+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1234555556666666666666666655432100 01 124455555555555555555555555441 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 504 HNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 504 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
....++..+...|.+.|++++|...+++..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 123344445555555555555555554443
No 258
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.7e-13 Score=110.97 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=68.0
Q ss_pred ccceEEeccCCCcCC-----------hHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 150 QEGKIFVGNLPNWIK-----------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
.+++|+|.||..... +++|+++|++||.|.+|.| .| + .++|||||+|.+.++|.+|+..| ||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~-~---~~~G~afV~f~~~~~A~~Ai~~l--ng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD-R---HPDGVASVSFRDPEEADYCIQTL--DG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET-T---CTTCEEEEECSCHHHHHHHHHHS--TT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec-C---CCCEEEEEEECCHHHHHHHHHHc--CC
Confidence 345999999944332 5799999999999999966 55 2 36999999999999999999999 99
Q ss_pred ceeeceEEEEEecCCcc
Q 004006 219 VEFHGRVLTVKLDDGRR 235 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~~ 235 (779)
..++||+|+|.++.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999997764
No 259
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.41 E-value=5e-13 Score=132.94 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=79.6
Q ss_pred cccceEEeccCCCcC-ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 149 RQEGKIFVGNLPNWI-KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
...++|||+|||..+ ++++|+++|++||.|.+++|..| . +|+++|||||+|.+.++|.+|+..| ||..++|+.|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 257 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG-Q-DGQLKGFAVLEYETAEMAEEAQQQA--DGLSLGGSHLR 257 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC-S-SCCEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC-C-CCCcccEEEEEeCCHHHHHHHHHHh--CCCccCCeEEE
Confidence 345699999999995 99999999999999999999997 4 7999999999999999999999999 99999999999
Q ss_pred EEecCCcchhhH
Q 004006 228 VKLDDGRRLKNK 239 (779)
Q Consensus 228 v~~~~~~~~~~~ 239 (779)
|.++.++..+++
T Consensus 258 v~~a~~~~~~~~ 269 (284)
T 3smz_A 258 VSFCAPGPPGRS 269 (284)
T ss_dssp EEECCSSSCHHH
T ss_pred EEEecCCCcccc
Confidence 999988865543
No 260
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.41 E-value=3.3e-13 Score=134.87 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=75.1
Q ss_pred cccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCC-CCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 149 RQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNN-FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
...++|||+|||+. +|+++|+++|++||.|..|+|+.+ .. ||+++|||||+|.+.++|.+|+ .| ||..|+|+.|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~tg~~~g~afV~F~~~~~A~~A~-~l--~g~~~~g~~i 283 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG-QKEHSFNNCCAFMVFENKDSAERAL-QM--NRSLLGNREI 283 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC-CC---CCCEEEEEEESSHHHHHHHG-GG--TTEEETTEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec-CCcCCCCceEEEEEeCCHHHHHHHH-Hh--cCCEECCcEE
Confidence 34569999999999 999999999999999999999998 54 6999999999999999999999 99 9999999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|.+++++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999875
No 261
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=4.8e-13 Score=130.53 Aligned_cols=78 Identities=26% Similarity=0.515 Sum_probs=72.5
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..+.++|||||||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..+ ||..++|+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~ 89 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-------RGFGFIRLESRTLAEIAKAEL--DGTILKSRPLR 89 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CcEEEEEECCHHHHHHHHHHc--CCcEECCceeE
Confidence 345569999999999999999999999999999999776 899999999999999999999 99999999999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|.++.+.
T Consensus 90 v~~a~~~ 96 (261)
T 3sde_A 90 IRFATHG 96 (261)
T ss_dssp EEECCCS
T ss_pred eeecccC
Confidence 9998764
No 262
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=4.8e-13 Score=127.78 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=72.0
Q ss_pred ccceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+|||+ .+++++|+++|++||.|.+|+|+++ + +|||||+|.+.++|.+|++.+ ||..+.|+.|+|
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~-~-----~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~v 104 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRI 104 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-T-----SCCEEEEESCHHHHHHHHHHH--TTCBCSSSBCEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC-C-----CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEE
Confidence 446999999999 9999999999999999999999987 3 799999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.+++..
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998755
No 263
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=132.48 Aligned_cols=170 Identities=13% Similarity=0.045 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc------C
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR-------GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE------G 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 361 (779)
....+..+...|...|++++|+.+|+++.+. .......++..+..+|...|++++|+..|++.++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456788999999999999999999999873 22334567888999999999999999999998764 2
Q ss_pred C-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC------C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 004006 362 I-EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH------A-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE--- 430 (779)
Q Consensus 362 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 430 (779)
- .....++..++..|...|++++|+..|+++.+.. . .....++..++.+|...|++++|+++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 2246678889999999999999999999887641 1 224456778888888888888888888888764
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 431 ---GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 431 ---~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
+. .....++..+...|...|++++|+..|+++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 12234567777778888888888888877764
No 264
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=5.3e-13 Score=110.14 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=71.0
Q ss_pred ccceEEeccCCC--cC---ChHHHHHHHhccCCeeEEEEecCCCC----CCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 150 QEGKIFVGNLPN--WI---KKHLVMEFFRQFGPIKNVILIKGYNN----FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 150 ~~~~~~v~~l~~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
+++.|++.|+-. ++ -+++|++.|++||.|.+|+|+++ +. +++++||+||+|.+.++|.+|++.| ||..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~-~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L--nGr~ 95 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQE-KQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRW 95 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEE-EESSSTTCEEEEEEEEEESSHHHHHHHHHHH--TTCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeec-CCCcccCCcceEEEEEEECCHHHHHHHHHHH--CCCE
Confidence 566999999832 22 35799999999999999999998 43 5678999999999999999999999 9999
Q ss_pred eeceEEEEEecCCc
Q 004006 221 FHGRVLTVKLDDGR 234 (779)
Q Consensus 221 ~~~~~~~v~~~~~~ 234 (779)
++||.|+|.++...
T Consensus 96 f~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 96 FAGRKVVAEVYDQE 109 (118)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCcEEEEEEcChH
Confidence 99999999997543
No 265
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.39 E-value=1.1e-13 Score=126.70 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=72.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||||||+++|+++|+++|++||.+.. .++.+ ..+|+++|||||+|.+.++|.+|+ .+ ||..+.|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKAL-EL--TGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHH-HG--GGEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEE-CCCCccccEEEEEECCHHHHHHHH-hc--CCCEeCCeEEEE
Confidence 34569999999999999999999999998877 44555 678999999999999999999999 48 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++.++.
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9987653
No 266
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.39 E-value=8.3e-13 Score=131.35 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=78.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+.+|+++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|+..+ ||..++|+.|+|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDL--LGKPLGPRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.++.
T Consensus 171 ~a~~~~ 176 (284)
T 3smz_A 171 WTDAGQ 176 (284)
T ss_dssp ECCGGG
T ss_pred ECCCCC
Confidence 987664
No 267
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=132.29 Aligned_cols=170 Identities=17% Similarity=0.115 Sum_probs=131.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------H 396 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 396 (779)
+..++..+...|...|++++|+.+|+++++. .......++..+...|...|++++|+..|+++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888999999999999999999999873 22335678889999999999999999999998765 1
Q ss_pred -CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 004006 397 -ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE------GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--- 465 (779)
Q Consensus 397 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 465 (779)
......++..++.+|...|++++|++.|+++.+. +. .....++..+...|...|++++|+.+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567888899999999999999999888764 21 223456777788888888888888888887664
Q ss_pred ---CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 466 ---GFSP-SIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 466 ---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
+..+ ...++..+..+|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 244677778888888888888888887765
No 268
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.37 E-value=6.9e-13 Score=123.15 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=68.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCe--eEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece---
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPI--KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR--- 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~--- 224 (779)
++.+|||+|||+.+|+++|+++|++||.| .+++++.+ + |+.+|||||+|.+.++|.+|+..| ||..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~-~--~~~~g~gfV~f~~~~~A~~Ai~~l--ng~~~~g~~~~ 196 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG-K--SERSSSGLLEWDSKSDALETLGFL--NHYQMKNPNGP 196 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC-C--SSSSEEEEEECSSHHHHHHHHHHH--TTCEECCSSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC-C--CCCceEEEEEeCCHHHHHHHHHHh--CCCCccCCCCC
Confidence 34589999999999999999999999999 89999887 3 566799999999999999999999 99999887
Q ss_pred -EEEEEec
Q 004006 225 -VLTVKLD 231 (779)
Q Consensus 225 -~~~v~~~ 231 (779)
++.|.++
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 5777664
No 269
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.36 E-value=7.2e-13 Score=123.86 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=71.5
Q ss_pred cceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+++|||+|||+ .+++++|+++|++||.|.+|+++.+ + +|||||+|.+.++|.+|++.+ ||..++|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~-~-----~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT-C-----SSCCEEECTTTHHHHHHHHHH--TTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCeecCeEEEEE
Confidence 46999999999 9999999999999999999999987 3 799999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++..
T Consensus 75 ~a~~~ 79 (198)
T 1qm9_A 75 LSKHQ 79 (198)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98755
No 270
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=6.8e-11 Score=123.42 Aligned_cols=230 Identities=8% Similarity=0.014 Sum_probs=149.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------CCcccHH
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRDGLK-PD----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR------PTSRTFM 580 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 580 (779)
....+...|++++|+..|++..+.... .+ ..++..+...|...|++++|+..+++....... ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344556677777777777777653111 12 345667777777888888887777776543111 0133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRS----GCI-PTVHTFNALILGLVEKRQMEKAIEILDEMTL-----AGISPNEHTYT 650 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~~~~~~~~ 650 (779)
.+...|...|++++|+..|++..+. +.. ....+++.+..+|...|++++|+..|++.++ .. .....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6777777888888888887776642 111 1134667777788888888888888887765 33 22356777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGL----ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILI 723 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (779)
.+...|.+.|++++|..++++.++... ......+..+...|...|+ +++|..++++... .+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHH
Confidence 788888888888888888888876421 2223345566666666777 6677776665211 112234566788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004006 724 DGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|...|++++|.+.++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887764
No 271
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=3.2e-11 Score=134.54 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|+.|...|.+.|++++|++.|+++++.... +..+|+.+..+|.+.|++++|++.|++.++.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4567899999999999999999999999987533 6789999999999999999999999999997533 6889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
+|.+.|++++|++.|+++.+.... +..+|+.++.+|.+.|++++|++.|++..+.+ +.+..++..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999998665 78899999999999999999999999999985 5568889999999999999999
Q ss_pred HHHHHHHHHH
Q 004006 455 CLIVFERLKE 464 (779)
Q Consensus 455 a~~~~~~~~~ 464 (779)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 272
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.2e-10 Score=121.45 Aligned_cols=309 Identities=12% Similarity=0.048 Sum_probs=143.2
Q ss_pred HHHHHHHHHHH--HHcCChHHHHHHHHHHHHC--CCCCC--HhhHHHHHHHH--HccCChHHHH---------HHHHHHH
Q 004006 296 RREFGLMVNYY--ARRGDMHRARQTFENMRAR--GIEPT--LHVYTNLIHAY--AVGRDMEEAL---------SCVRKMK 358 (779)
Q Consensus 296 ~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~li~~~--~~~g~~~~A~---------~~~~~m~ 358 (779)
...-..|-.+| ...+++++|..+++++.+. .+..| ...|-.++..- .-.+.+..+. +.++.+.
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 89 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence 33344455566 7889999999999987653 22122 23334443321 1112222222 4444443
Q ss_pred HcCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 359 EEGIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-L----NAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 359 ~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
......+ ...+...+..+...|++++|+..|+++.+.-.. . ...++..++.+|...|++++|+..+++..+
T Consensus 90 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 90 TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2110001 112334455556677777777777776653111 1 234566666666666666666666666554
Q ss_pred cCC--C----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004006 430 EGI--D----APIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 430 ~~~--~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (779)
... . ....+++.+..+|...|++++|++.|++..+. +... ...++..+..+|...|++++|++.+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 210 0 01233445555555555555555555554431 1000 11234444444555555555555444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--
Q 004006 499 SSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR-DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-- 575 (779)
Q Consensus 499 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 575 (779)
+.. .. .... ...++..+..++.+.|++++|...+++........+
T Consensus 250 ~~~-------------------------------~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 297 (378)
T 3q15_A 250 KVS-------------------------------REKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK 297 (378)
T ss_dssp HHH-------------------------------HHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred HHH-------------------------------HhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 300 00 2111 134444455555555555555555555444321111
Q ss_pred --cccHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 576 --SRTFMPIIHGFARAGE---MKRALEIFDMMRRSGCIP-TVHTFNALILGLVEKRQMEKAIEILDEMTL 639 (779)
Q Consensus 576 --~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 639 (779)
...+..+...|...++ +.+|+..+++. +..+ ....+..+...|...|++++|...|++..+
T Consensus 298 ~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 298 FYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122233333444444 44444444431 1111 123444556666666777777766666543
No 273
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=4.6e-10 Score=116.95 Aligned_cols=235 Identities=10% Similarity=-0.006 Sum_probs=144.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HhHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLH----VYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MS----LVTY 369 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~ 369 (779)
+..+...+...|++++|+..+++........+.. +++.+...+...|++++|...+++.++.... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445567778999999999999988764222222 4566677788889999999999887652110 11 2335
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcC----CC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----Chhh
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERH----AT--L-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA----PIDI 438 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~ 438 (779)
..+...+...|++++|+..|+++.... .. + ...++..+..+|...|++++|.+.+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667788888899999988888876532 11 1 23455667777888888888888888777643211 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI-ISYG-----CLINLYTKIGKVSKALEVSKVMKSSGIKH---NMKTY 509 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~ 509 (779)
+..+...+...|++++|...+++........+. ..+. ..+..+...|++++|...+++........ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 556667777777777777777776543111111 1111 22233556677777777766655432111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
..+...+...|++++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555666666666666665543
No 274
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.32 E-value=3.1e-12 Score=122.14 Aligned_cols=77 Identities=10% Similarity=0.223 Sum_probs=71.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~ 227 (779)
++++|||+|||..+++++|+++|++|| .|.+++++.+ ++|||||+|.+.++|.+|++.| ||..++ |+.|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l--~g~~~~~g~~l~ 221 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLR 221 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHH--TTCBSSSSCBCE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHH--CCCccCCCCeEE
Confidence 457999999999999999999999999 9999999753 2799999999999999999999 999999 99999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|.|++++
T Consensus 222 v~~a~~~ 228 (229)
T 2adc_A 222 VSFSKST 228 (229)
T ss_dssp EEECSSC
T ss_pred EEEecCC
Confidence 9999765
No 275
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.4e-10 Score=107.08 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..|..+...+...|++++|+..|+++.+.. ..+..++..+...+...|++++|.+.++++.+.. +.+...+..++..|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346667788888888888888888887653 2366777888888888888888888888887764 33677778888888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (779)
...|++++|+..|+++...... +...+..++.+|...|++++|.++++++.+.. +.+..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888776443 66777777777778888888888887777764 345566677777777777777777
Q ss_pred HHHHHHHHC
Q 004006 457 IVFERLKEC 465 (779)
Q Consensus 457 ~~~~~~~~~ 465 (779)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777766553
No 276
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.32 E-value=2.9e-12 Score=116.79 Aligned_cols=75 Identities=28% Similarity=0.565 Sum_probs=67.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc----C-------CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF----G-------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
+.++|||||||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+ ||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-------~g~afV~f~~~~~A~~A~-~~--~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AF--DG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------TTEEEEEESSHHHHHHHG-GG--TT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------CCEEEEEeCCHHHHHHHH-Hh--CC
Confidence 45799999999999999999999999 6 6777776554 899999999999999999 78 99
Q ss_pred ceeeceEEEEEecCCc
Q 004006 219 VEFHGRVLTVKLDDGR 234 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~ 234 (779)
..++|+.|+|.++.+.
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHDY 88 (172)
T ss_dssp CEETTEECEEECCSSC
T ss_pred cEecCceeeecCCccc
Confidence 9999999999987655
No 277
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=7.7e-11 Score=131.48 Aligned_cols=166 Identities=17% Similarity=0.034 Sum_probs=150.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+..+|+.|..+|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|+..|+++++.+.. +..+|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4578999999999999999999999999997533 6889999999999999999999999999998655 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
+|.+.|++++|++.|++..+.+ +.+..+|+.+..+|...|++++|++.|++.++.... +...+..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999985 557889999999999999999999999999986433 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 004006 490 ALEVSKVMKS 499 (779)
Q Consensus 490 A~~~~~~m~~ 499 (779)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 278
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=2.5e-12 Score=120.17 Aligned_cols=76 Identities=11% Similarity=0.227 Sum_probs=70.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~v 228 (779)
+++|||+|||..+++++|+++|++|| .|.+++++.+ .+|||||+|.+.++|.+|+..| ||..++ |++|+|
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~v 191 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLRV 191 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST------TSSCEEEECSSHHHHHHHHHHH--TSSCCSSCCSCCE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHh--cCCccCCCCeEEE
Confidence 45999999999999999999999999 9999999764 2799999999999999999999 999999 999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999765
No 279
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.30 E-value=2.9e-12 Score=125.02 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=73.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee----ceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH----GRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~----~~~ 225 (779)
++++|||+|||..+|+++|+++|++||.|.+|+|+.| .+|+++|||||+|.+.++|.+|+..| |+..+. ||+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~r~ 170 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERC--GDGAFLLTTTPRP 170 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHH--HHSCEESSSSCCB
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHh--cCCeEEecCCCce
Confidence 4569999999999999999999999999999999998 47999999999999999999999998 765553 999
Q ss_pred EEEEecCCc
Q 004006 226 LTVKLDDGR 234 (779)
Q Consensus 226 ~~v~~~~~~ 234 (779)
|.|.++...
T Consensus 171 i~v~~~~~~ 179 (261)
T 3sde_A 171 VIVEPMEQF 179 (261)
T ss_dssp CEEEECCCE
T ss_pred EEEeecccc
Confidence 999998765
No 280
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=9.4e-10 Score=114.57 Aligned_cols=273 Identities=9% Similarity=-0.024 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----HH
Q 004006 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMK----TYSMLINGFLKLKDWANVFAVFEDVMRDGLK-PDV----VL 543 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~----~~ 543 (779)
....+...+...|++++|...+++.....-..+.. .++.+...|...|++++|...+++..+.... .+. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455667778999999999999988754222322 4566677888899999999999887653211 122 23
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC----CC--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHH
Q 004006 544 YNNIIRAFCGMGNMDRAIHIVKEMQKER----HR--P-TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP----TVH 612 (779)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 612 (779)
+..+...+...|++++|...+++..... .. + ....+..+...+...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5667778889999999999998876542 11 1 22345567778888999999999999887653221 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPN--EHTYT----TIMHGYASLGDTGKAFEYFTKLRNEGLEL---DVFT 683 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~ 683 (779)
.+..+...+...|++++|..++++........+ ..... .++..+...|++++|..++++........ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677778888899999999999988765311111 11111 23344778899999999998887643221 1335
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 684 YEALLKACCKSGRMQSALAVTKEMSAQ----KIPRNT-FVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
+..+...+...|++++|...++++... +...+. ..+..+..++...|+.++|...+++..+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677788888999999999998887542 211122 35667788888899999999999988874
No 281
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.8e-12 Score=101.28 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=57.6
Q ss_pred CcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCCcc
Q 004006 161 NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235 (779)
Q Consensus 161 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~~~ 235 (779)
..+++++|+++|++||.|.+|+|+ ++++|||||+|.+.++|..|++.+ +| +.|++|+|.|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~~--~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS------SKKPGTAVVEFATVKAAELAVQNE--VG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE------SSSSSEEEEEESCHHHHHHHHHTC--CB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc------cCCCCEEEEEECCHHHHHHHHHhc--CC--CCCCeEEEEEccCCC
Confidence 568999999999999999999987 356999999999999999999865 55 679999999997764
No 282
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=2.1e-10 Score=110.02 Aligned_cols=207 Identities=13% Similarity=-0.027 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
++..+..+...|.+.|++++|+..|+++++....++...+..+..++...|++++|++.|++.++.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 567788899999999999999999999998764367788888999999999999999999999987533 6788999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNA-------IIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDG 445 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 445 (779)
+|...|++++|+..|+++.+..+. +. .+|..+..++...|++++|++.|++..+.+ +. +...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 999999999999999999987554 55 568889999999999999999999999864 33 35677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 446 YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLI 513 (779)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 513 (779)
|...|+ .+++++...+.. +...|..+. ....+.+++|+..|++..+.. +-+..+...+.
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~ 221 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 865553 345555544322 333443332 345567899999999998864 22444444443
No 283
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=4.3e-12 Score=126.74 Aligned_cols=84 Identities=11% Similarity=0.224 Sum_probs=71.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
...++|||+|||+.+++++|+++|++|| .|.+|+++.+ +. |+++|||||+|.+.++|.+|+..+ ||..++|+.|+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~-~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL-RF-NTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeC-CC-CCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEE
Confidence 3567999999999999999999999999 9999999987 44 889999999999999999999999 99999999999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.++.+...
T Consensus 191 v~~a~~~~~ 199 (292)
T 2ghp_A 191 TKVSNPLEK 199 (292)
T ss_dssp EEECCCC--
T ss_pred EEECCCCcc
Confidence 999977643
No 284
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=3.1e-10 Score=104.66 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 579 FMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658 (779)
Q Consensus 579 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 658 (779)
+..+...+...|++++|+..++++.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 444555666667777777777666554332 56666667777777777777777777766553 3456667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004006 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADL 738 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 738 (779)
.|++++|..+++++.+.. +.+...+..++.+|...|++++|..+++++.+.. +.+...+..++..+...|++++|.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777664 4466677777777777778888887777776654 45667777777778888888888888
Q ss_pred HHHHHH
Q 004006 739 MQQMKQ 744 (779)
Q Consensus 739 ~~~m~~ 744 (779)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 285
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.28 E-value=6.4e-12 Score=117.56 Aligned_cols=75 Identities=27% Similarity=0.541 Sum_probs=65.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccC-----------CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-----------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g-----------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
..++|||+|||+++|+++|+++|++|| .|.++++ ++++|||||+|.+.++|.+|+ .+ ||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~Al-~l--~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQAM-AF--DG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHHG-GG--TT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHHH-Hh--cC
Confidence 346999999999999999999999995 4555555 445999999999999999999 78 99
Q ss_pred ceeeceEEEEEecCCc
Q 004006 219 VEFHGRVLTVKLDDGR 234 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~ 234 (779)
..++|+.|+|.++.+.
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEETTEEEEEECCCCC
T ss_pred CEEcCceEEEeCCCCC
Confidence 9999999999998654
No 286
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=6.7e-12 Score=123.79 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=65.8
Q ss_pred ccceEEecc--CCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee---ce
Q 004006 150 QEGKIFVGN--LPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GR 224 (779)
Q Consensus 150 ~~~~~~v~~--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~---~~ 224 (779)
++.+||||| |++.+|+++|+++|++||.|.+|.+..+ ||||||+|.+.++|++|++.| ||..+- |+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-------kgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~~g~ 87 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLGQ 87 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-------CSEEEEEESSHHHHHHHHHHT--TTCEEECTTSC
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCccccccCC
Confidence 445999999 6899999999999999999999877643 899999999999999999999 999983 45
Q ss_pred --EEEEEecCCc
Q 004006 225 --VLTVKLDDGR 234 (779)
Q Consensus 225 --~~~v~~~~~~ 234 (779)
++.|.++...
T Consensus 88 ~~~ly~~~~~~~ 99 (345)
T 3tht_A 88 KITLYLNFVEKV 99 (345)
T ss_dssp EEECEEEECSSE
T ss_pred ceEEEEEEeecc
Confidence 6788887533
No 287
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=7.9e-10 Score=106.01 Aligned_cols=203 Identities=15% Similarity=0.048 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (779)
Q Consensus 539 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 618 (779)
.|...+..+...+...|++++|+..|++........+...+..+..++...|++++|+..|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3667888899999999999999999999998876456777777888999999999999999999987654 677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAGISPNE-------HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL--DVFTYEALLK 689 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 689 (779)
.+|...|++++|+..|++.++.. +.+. ..|..+...+...|++++|+..|+++++.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999998764 3344 457888888899999999999999998864 33 3567777887
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (779)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (779)
+|...| ..+++++...+ ..+...|..+. ....+.+++|+..+++..+. .|+....
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~ 216 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEI 216 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence 876544 44556665543 33444554333 34567789999999999984 5554433
No 288
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=1.5e-11 Score=100.59 Aligned_cols=76 Identities=22% Similarity=0.180 Sum_probs=63.1
Q ss_pred ceEEeccCCCcC----------ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 152 GKIFVGNLPNWI----------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 152 ~~~~v~~l~~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
..|.+.|+-..- -+++|++.|++||.|.+|.|.++ . ++|||||+|.+.++|.+|++.| ||..+
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~----~~G~~fV~f~~~e~A~~Ai~~l--nG~~f 80 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-S----AQGNVYVKCPSIAAAIAAVNAL--HGRWF 80 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-C----TTCCEEEECSSHHHHHHHHHHH--TTCEE
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-C----CcEEEEEEECCHHHHHHHHHHh--CCCEE
Confidence 367777763211 23588999999999999999765 2 4899999999999999999999 99999
Q ss_pred eceEEEEEecCCc
Q 004006 222 HGRVLTVKLDDGR 234 (779)
Q Consensus 222 ~~~~~~v~~~~~~ 234 (779)
+||.|+|.++...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998544
No 289
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=2.9e-09 Score=105.05 Aligned_cols=217 Identities=8% Similarity=0.023 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG--DMHRARQTFENMRARGIEPTLHVYTNLIHAY 341 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (779)
+.|..++++++..||. +...|+.-..++...| ++++++++++.++..+.+ +..+|+....++
T Consensus 50 ~~aL~~t~~~L~~nP~---------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL 113 (306)
T 3dra_A 50 ERALHITELGINELAS---------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcH---------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHH
Confidence 6788888888888887 4555666666777777 888888888888877543 556676666655
Q ss_pred ----Hcc---CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 342 ----AVG---RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE--AADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 342 ----~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+. +++++++++++++++... -+..+|+.-.-++.+.|.++ +++++++++.+.++. |..+|+....++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 555 678888888888887653 37788888888888888877 888888888887655 7777777776766
Q ss_pred hcCC------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHH
Q 004006 413 QTRN------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK-CLIVFERLKECG--FSPSIISYGCLINLYTK 483 (779)
Q Consensus 413 ~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~g--~~~~~~~~~~li~~~~~ 483 (779)
..+. ++++++.+++++..+ +.|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..++++|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 6665 677777777777764 5566777776666666666333 333444443322 11245566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 004006 484 IGKVSKALEVSKVMKS 499 (779)
Q Consensus 484 ~g~~~~A~~~~~~m~~ 499 (779)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6666666666666654
No 290
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1e-10 Score=116.32 Aligned_cols=229 Identities=13% Similarity=0.078 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCC-CCHhhHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR------GIE-PTLHVYTN 336 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~~~ 336 (779)
+.|...|.++++.-.. ............+..+...|...|++++|+..|+++.+. +-. ....++..
T Consensus 18 ~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 18 GSAVPLCKQALEDLEK-------TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp SSHHHHHHHHHHHHHH-------HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 8888888888763210 000000113556888999999999999999999998865 211 23457899
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc------C-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C-CCCChh
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEE------G-IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------H-ATLNAI 402 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~ 402 (779)
+..+|...|++++|++.|++.++. . .+....++..++..|...|++++|+.+|+++.+. . ......
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1234678899999999999999999999999875 1 122456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCC-ChhhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCC
Q 004006 403 IYGNIIYAQCQTRNMERAEALVRDMEEE-------GIDA-PIDIYHMMMDGYTIIGNEE------KCLIVFERLKECGFS 468 (779)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~g~~ 468 (779)
++..++.+|...|++++|+++|+++.+. ...+ ....+..+...+...+... .+...+..+.. ...
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 8889999999999999999999998864 1122 2333444444444333322 22222221111 011
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 469 PSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 469 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
....++..+..+|...|++++|..+|++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 13557888999999999999999999988753
No 291
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.8e-10 Score=114.57 Aligned_cols=157 Identities=12% Similarity=-0.003 Sum_probs=111.5
Q ss_pred HcCChHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCCHhHHHHHH
Q 004006 308 RRGDMHRARQTFENMRA-------RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE------GI-EMSLVTYSIIV 373 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~l~ 373 (779)
..|++++|+.+|++.++ .+......++..+..+|...|++++|+..|+++++. +- +....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34556666666555554 221224567888999999999999999999988764 21 22466788899
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCChhhH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH-------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE------G-IDAPIDIY 439 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 439 (779)
..|...|++++|+..|+++.... ......++..++.+|...|++++|+++|+++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999887651 1224567778888888888888888888887764 1 11224556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
..+...|...|++++|+..|+++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777777777777654
No 292
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=6.9e-11 Score=88.92 Aligned_cols=72 Identities=15% Similarity=0.294 Sum_probs=61.9
Q ss_pred cceEEeccCCC----cCCh----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 151 EGKIFVGNLPN----WIKK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 151 ~~~~~v~~l~~----~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
.++|+|.-.+. ..-+ .+|.+.|++||.|..++++.| .+||+|.+.++|.+|++ | ||..++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---------~~fVtF~d~~sAlaAi~-m--nG~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---------KMWVTFLEGSSALNVLS-L--NGKELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---------SEEEEESSHHHHHHGGG-G--TTCEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---------CEEEEECChHHHHHHHh-c--CCeEeC
Confidence 45888887762 2333 578999999999999999987 38999999999999998 8 999999
Q ss_pred ceEEEEEecCCc
Q 004006 223 GRVLTVKLDDGR 234 (779)
Q Consensus 223 ~~~~~v~~~~~~ 234 (779)
||.|+|+++++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998765
No 293
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.17 E-value=1.8e-08 Score=99.44 Aligned_cols=223 Identities=6% Similarity=-0.049 Sum_probs=175.1
Q ss_pred HHcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----Hcc
Q 004006 307 ARRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGF----AKM 379 (779)
Q Consensus 307 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~ 379 (779)
.+.|. .++|+.+++.++..+.. +..+|+.--.++...+ ++++++++++.++..+.. +..+|+.-...+ .+.
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 34444 47999999999988533 5667899999998888 999999999999987644 777888877777 666
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---
Q 004006 380 ---GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME--RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN--- 451 (779)
Q Consensus 380 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 451 (779)
+++++++.+++++.+.+.. |..+|+.-..++.+.|.++ ++++.++++++.+ ..+..+|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 7899999999999998766 8899999888888899888 9999999999886 5678888887777777776
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 004006 452 ---EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK-ALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANV 525 (779)
Q Consensus 452 ---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a 525 (779)
++++++.+++++..... |...|+-+...+.+.|+... +..+..++.+.+ -..+...+..++.+|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88888888888876544 77888888888888877444 444555554422 123667777888888888888888
Q ss_pred HHHHHHHHH
Q 004006 526 FAVFEDVMR 534 (779)
Q Consensus 526 ~~~~~~~~~ 534 (779)
+++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888775
No 294
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=1.8e-09 Score=107.81 Aligned_cols=160 Identities=13% Similarity=-0.021 Sum_probs=84.2
Q ss_pred HHHccCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHH
Q 004006 340 AYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNIIY 409 (779)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~ 409 (779)
.|...|++++|.+.|++.++. |-.. ...+|+.+..+|.+.|++++|+..|+++.+..... + ..++..++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666555432 1111 13455666666666666666666666655431110 0 234555666
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHH
Q 004006 410 AQCQT-RNMERAEALVRDMEEEGIDA-P----IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYGCL 477 (779)
Q Consensus 410 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------~~~~~l 477 (779)
+|... |++++|++.|++..+..... + ..+++.+...|...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 66666666666655431000 0 234555566666666666666666666654322111 134555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 004006 478 INLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~ 499 (779)
..++...|++++|+..|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5666666666666666666554
No 295
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=2.8e-09 Score=104.57 Aligned_cols=104 Identities=15% Similarity=0.005 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT---LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVT 368 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~ 368 (779)
.+...+..+...+.+.|++++|+..|+++++.... + ..++..+..+|.+.|++++|+..|++.++.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 36677788899999999999999999999887422 3 567888889999999999999999999886321 22567
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCC
Q 004006 369 YSIIVGGFAK--------MGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 369 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~ 398 (779)
+..+..++.+ .|++++|+..|+++.+..+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 7888888888 99999999999999887543
No 296
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=2.6e-09 Score=106.61 Aligned_cols=175 Identities=10% Similarity=-0.007 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC-CcccHHHHHHHHHhcCCHHHH
Q 004006 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER----HRP-TSRTFMPIIHGFARAGEMKRA 595 (779)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a 595 (779)
++++|...|.+. +..|...|++++|...|++..... ... ...+|..+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666665543 556667777777777777665431 110 134556666666667777777
Q ss_pred HHHHHHHHHCCCCC-C----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 004006 596 LEIFDMMRRSGCIP-T----VHTFNALILGLVEK-RQMEKAIEILDEMTLAGIS-PN----EHTYTTIMHGYASLGDTGK 664 (779)
Q Consensus 596 ~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~ 664 (779)
+..|++..+..... + ..+++.+...|... |++++|+..|++.++.... .+ ..+|..+...|...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77666665431100 1 23555566666664 6666666666665542100 01 2345556666666666666
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004006 665 AFEYFTKLRNEGLELDV------FTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (779)
Q Consensus 665 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (779)
|+.+|+++.+....... ..|..++.++...|++++|...+++..+.
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666654322111 13455555666666666666666666543
No 297
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=2.8e-09 Score=100.26 Aligned_cols=189 Identities=12% Similarity=-0.012 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+......+.+.|++++|+..|+++++.... +...|... ....- .......+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHH
Confidence 34445667777889999999999988876311 23344440 00000 000111122244444
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--HHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN--EEK 454 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~ 454 (779)
.+.|++++|+..|+++.+..+. +..++..++.+|...|++++|++.|++..+.+ +.+..++..+...|...|+ .+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 4555555555555555444333 44445555555555555555555555554443 3334444444444433332 222
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSM 511 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 511 (779)
+...+..... ..+....+..+..++...|++++|+..|++..+. .|+......
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 3333333321 1111222233344444555555555555555543 344443333
No 298
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2e-10 Score=93.37 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=70.7
Q ss_pred ccccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCC-HHHHHHHHHHhhhCCceeeceE
Q 004006 148 FRQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG-PAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
...++.|||+||++. ++.++|+++|++||.|..|.+++| .-.|||.|.+ ..+|..|+..+..+|..|+|..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-------AKEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 456789999999999 999999999999999999999998 4469999999 8999999999855688899999
Q ss_pred EEEEecCCc
Q 004006 226 LTVKLDDGR 234 (779)
Q Consensus 226 ~~v~~~~~~ 234 (779)
++++...+.
T Consensus 88 ~~~evL~Ge 96 (121)
T 1owx_A 88 VTWEVLEGE 96 (121)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCCH
Confidence 999876444
No 299
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=7.3e-09 Score=89.42 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.|..++..|...|++++|+.+|+++.+.+. .+...+..+...+...|++++|..+|+++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 356677777788888888888888776542 356677777777777788888888888877654 235667777777777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
..|++++|+.+|+++.+.... +..++..++.+|.+.|++++|.+.|+++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 788888888888777766433 5566677777777777777777777776654
No 300
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=6.5e-09 Score=97.79 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=106.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 004006 405 GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI 484 (779)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 484 (779)
..++.+|.+.|++++|+..|++..+.+ +.+..++..+..+|...|++++|+..|++.++.... +..+|..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 448999999999999999999999985 567889999999999999999999999999987533 678888998888776
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 485 GK--VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 485 g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
|+ .+.+...++.... ..+....+..+..++...|++++|+..|++.++. .|+......+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 54 4455666665542 2233334455666777889999999999999875 566655555444
No 301
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=5.6e-07 Score=96.20 Aligned_cols=125 Identities=13% Similarity=0.072 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL-GDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
.+|...+..+.+.+..+.|..+|+++ ... ..+...|......-... ++.+.|..+|+..++.- ..+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666778899999999998 322 23444554322222223 36999999999998863 3345566777888
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
....|+.+.|..+|+++. .....|...+..=...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999872 3577888888877888999999998888874
No 302
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=3.6e-07 Score=97.73 Aligned_cols=371 Identities=10% Similarity=-0.000 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHhcCC-ccHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHC-CCC-CCHhhHHHH
Q 004006 264 EWHRREFRKAVETQP-ENWQAVVSAFERIK--KPSRREFGLMVNYYARRGD-MHRARQTFENMRAR-GIE-PTLHVYTNL 337 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~l 337 (779)
+.|+.+|++++..-| .+...+...|++.- -|+...|...+....+.|. .+....+|+.++.. |.. .+...|...
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 677888888877766 55666666666542 3677777777777666663 34566777777653 322 255677777
Q ss_pred HHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004006 338 IHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (779)
Q Consensus 338 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (779)
+..+.. .++++.+..+|++.+.....--...|...... .+......+..++.+.
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~--------------------- 149 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT--------------------- 149 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH---------------------
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH---------------------
Confidence 766542 35677788888888764211111122211111 1111111111111110
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG--N-----EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
...+..|..+++++...-...+...|...++.-...+ - .+.+..+|++++... .-+...|...+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 0112222222222221100012223333333222110 0 233445555555432 2234455555555555556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhC
Q 004006 487 VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG---------LKP---DVVLYNNIIRAFCGM 554 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------~~~---~~~~~~~l~~~~~~~ 554 (779)
.+.|.++|++.... +.+...|. .|+...+.++. ++.+.+.- ..+ ....|...+..+.+.
T Consensus 229 ~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 229 KEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 66666666555554 22222111 11111111111 11111100 000 124455666666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004006 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR-AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEI 633 (779)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 633 (779)
++.+.|..+|+.+ .. ...+...|...+..-.. .++.+.|..+|+...+.... +...|...+....+.|+.+.|..+
T Consensus 300 ~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888887 22 11222333322222222 33688888888888765322 445566667767778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 634 LDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 634 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88862 2456677777666677888888888877764
No 303
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=8.1e-09 Score=101.27 Aligned_cols=186 Identities=5% Similarity=-0.050 Sum_probs=99.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIY 404 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 404 (779)
+...+..+...+.+.|++++|+..|+++++.... + ...+..++.+|.+.|++++|+..|+++.+..+. ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4455666666666777777777777777665321 3 556666777777777777777777777665332 123456
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004006 405 GNIIYAQCQ--------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGC 476 (779)
Q Consensus 405 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 476 (779)
..++.++.. .|++++|+..|+++.+.. +.+......+.. +..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 666666666 666777777776666653 112222211110 0000000 0011334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 004006 477 LINLYTKIGKVSKALEVSKVMKSSGIKH--NMKTYSMLINGFLKL----------KDWANVFAVFEDVMRD 535 (779)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~ 535 (779)
+..+|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|+..|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4555666666666666666655532111 123444455555543 5556666666665554
No 304
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.5e-08 Score=95.61 Aligned_cols=176 Identities=13% Similarity=0.066 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC----CHHHHHHHH
Q 004006 314 RARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG----NAEAADHWF 389 (779)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 389 (779)
+|+..|++..+.| +..++..+...|...+++++|++.|++..+.| +...+..|..+|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666553 55666666666666666666666666666654 45556666666655 4 566666666
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 004006 390 EEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGID-APIDIYHMMMDGYTI----IGNEEKCLIVFE 460 (779)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 460 (779)
++..+.+ +..++..|..+|.. .+++++|+++|++..+.+.. .....++.|..+|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 45556666666655 55666666666666554311 014455555555555 555666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 004006 461 RLKECGFSPSIISYGCLINLYTKI-G-----KVSKALEVSKVMKSSG 501 (779)
Q Consensus 461 ~~~~~g~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 501 (779)
+..+.+ .+...+..|..+|... | +.++|+..|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 655541 1333444555555432 2 5556666655555543
No 305
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=1.7e-09 Score=121.47 Aligned_cols=152 Identities=9% Similarity=-0.005 Sum_probs=76.8
Q ss_pred HcCChHHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 308 RRGDMHRARQTFENMR--------ARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
..|++++|++.|+++. +.. ..+...+..+..+|...|++++|++.|++.++.+. -+...|..+..+|.+.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 4455555555555555 221 11334455555555555555555555555554432 2445555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
|++++|+..|+++.+..+. +...|..++.+|.+.|++++ ++.|++..+.+ +.+..+|..+..+|.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555554333 44455555555555555555 55555555543 333444555555555555555555555
Q ss_pred HHHHH
Q 004006 460 ERLKE 464 (779)
Q Consensus 460 ~~~~~ 464 (779)
++..+
T Consensus 558 ~~al~ 562 (681)
T 2pzi_A 558 DEVPP 562 (681)
T ss_dssp HTSCT
T ss_pred Hhhcc
Confidence 54443
No 306
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=1.2e-09 Score=122.60 Aligned_cols=169 Identities=10% Similarity=-0.032 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHH--------hcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH
Q 004006 263 REWHRREFRKAV--------ETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY 334 (779)
Q Consensus 263 ~~~a~~~f~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 334 (779)
.+.|.+.|++++ ..+|. +...|..+...|.+.|++++|+..|+++++.+.. +...|
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~ 470 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSE---------------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLV 470 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTT---------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHH
T ss_pred HHHHHHHHHHhhhhccccccccccc---------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHH
Confidence 377888888887 55664 6677888999999999999999999999987533 77899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (779)
..+..+|...|++++|++.|++.++.... +...|..+..+|.+.|++++ ++.|+++.+.+.. +..+|..++.+|.+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHc
Confidence 99999999999999999999999987533 68889999999999999999 9999999998665 788999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
|++++|++.|++..+.+ +.+..++..+..++...++
T Consensus 548 g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999999998764 3345677777777766554
No 307
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=2.7e-08 Score=94.90 Aligned_cols=187 Identities=14% Similarity=0.016 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---hHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTY 369 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~ 369 (779)
+...+..+...+.+.|++++|+..|+++++...... ...+..+..+|.+.|++++|+..|+++++.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 445567778889999999999999999998632211 357888889999999999999999999886432 22 255
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 370 SIIVGGFAK------------------MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 370 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
..+..++.+ .|++++|+..|+++.+..+. +..++..+.... .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH---
Confidence 566666654 46777777777777766433 222322211110 0111110
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004006 432 IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--IISYGCLINLYTKIGKVSKALEVSKVMKSSG 501 (779)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (779)
.....+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123466788889999999999998887532211 2457788889999999999999998888764
No 308
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=3.4e-08 Score=96.16 Aligned_cols=180 Identities=10% Similarity=0.023 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
|+..|++....+ ..+..++..++.++...|++++|++++.+.+..+- ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665543 22444455666666677777777777766655432 1344555666667777777777777777766
Q ss_pred HCCCCC-----CHhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 464 ECGFSP-----SIISYGCLINL--YTKIG--KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 464 ~~g~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (779)
+. .+ +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 23 13333344433 22223 677777777776553 23333333444466667777777777765543
Q ss_pred CC---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004006 535 DG---------LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 535 ~g---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 571 (779)
.. -.-|..++..+|......|+ +|.++++++....
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 01245555555555555565 6666666666654
No 309
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=3.5e-08 Score=96.11 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGC-IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-----NEHTYTTIMH 654 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~ 654 (779)
.+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .+ +..+...|+.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH
Confidence 444444444555555555544443332 013334444444555555555555555555443 23 1333333333
Q ss_pred HH--HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C----CCCCHHHHHH
Q 004006 655 GY--ASLG--DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ-----K----IPRNTFVYNI 721 (779)
Q Consensus 655 ~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~~~~~ 721 (779)
++ ...| ++.+|..+|+++.+. .|+..+...|+.++.+.|++++|...++.+.+. + -+.|..++..
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 31 1112 455555555554433 122222222333455555555555555543321 0 0223444434
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004006 722 LIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
+|......|+ +|.++++++.+
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHhCh--HHHHHHHHHHH
Confidence 4444444444 45555555554
No 310
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=9.8e-10 Score=97.13 Aligned_cols=145 Identities=9% Similarity=0.011 Sum_probs=86.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
|...+...|++++|+..++....... -+...+..+..+|.+.|++++|++.|++.++... -+..+|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 34445556667777777776654421 1233455666677777777777777777766542 256677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL-VRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
+++|+..|+++.+..+. +..+|..++.+|.+.|++++|.+. +++..+.. +.+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 77777777777766444 566666777777777776655544 35666553 334455555555555444
No 311
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.8e-08 Score=86.89 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (779)
.|..+...+...|++++|+.+++++.+.. ..+...+..+...+...|++++|..+++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555566666666666666666665543 2345556666666666666777776666666654 335556666666777
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|++++|..+++++.... +.+...+..++.++.+.|++++|.++++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777666543 34566666677777777777777777777665
No 312
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=3e-08 Score=93.40 Aligned_cols=177 Identities=13% Similarity=0.046 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 004006 265 WHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG 344 (779)
Q Consensus 265 ~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (779)
+|...|.++.+.. +...+..|...|...|++++|+..|++..+.| +...+..|...|..
T Consensus 4 eA~~~~~~aa~~g-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~- 62 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-----------------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR- 62 (212)
T ss_dssp CTTHHHHHHHHTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHCC-----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-
Confidence 5666777776642 56778889999999999999999999999876 67888899999888
Q ss_pred C----ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh--
Q 004006 345 R----DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHAT-LNAIIYGNIIYAQCQ-- 413 (779)
Q Consensus 345 g----~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-- 413 (779)
+ ++++|+++|++..+.| +...+..|..+|.. .+++++|+.+|++..+.+.. .+..++..|..+|..
T Consensus 63 ~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 63 NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCC
Confidence 6 8999999999998875 78889999999987 89999999999999987532 127889999999998
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 004006 414 --TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-G-----NEEKCLIVFERLKECGF 467 (779)
Q Consensus 414 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~g~ 467 (779)
.+++++|+..|++..+. ..+...+..|..+|... | +.++|+.+|++..+.|.
T Consensus 140 g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999987 23455778888888654 3 89999999999988763
No 313
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.01 E-value=5.1e-08 Score=97.01 Aligned_cols=169 Identities=7% Similarity=0.052 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG-DMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (779)
+.|.+++++++..||. +...|+.--..+...| .+++++.+++.++..+.+ +..+|+....++.
T Consensus 71 e~AL~lt~~~L~~nP~---------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA---------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 6799999999999997 5555676667777778 599999999999988644 7788988888887
Q ss_pred cc-C-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 343 VG-R-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE--------AADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 343 ~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
+. + ++++++++++++++... .|...|+...-.+.+.|.++ ++++.++++.+.++. |..+|+....++.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 77 7 88999999999998754 38888988888877777776 899999999988766 8888888888888
Q ss_pred hcCC-------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 413 QTRN-------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 413 ~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
+.+. ++++++.+++++... +.|...|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7776 678888888888775 5677788777766666654
No 314
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=6.2e-10 Score=84.07 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=61.1
Q ss_pred ccceEEeccCCCc-----CCh----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 150 QEGKIFVGNLPNW-----IKK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 150 ~~~~~~v~~l~~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
+..+++|.-++.. .-+ .+|.+.|++||.|..++++.| + +||+|.+.++|.+||+ | ||..
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~--~fVtF~d~~sAl~AI~-l--dG~~ 81 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------Q--MLVTFADSHSALSVLD-V--DGMK 81 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------E--EEEECSCSHHHHHHHH-G--GGSE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------c--EEEEEcChHHHHHHHh-c--CCee
Confidence 3459999988632 222 468899999999999999988 2 9999999999999998 8 9999
Q ss_pred eeceEEEEEecCC
Q 004006 221 FHGRVLTVKLDDG 233 (779)
Q Consensus 221 ~~~~~~~v~~~~~ 233 (779)
++||.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998654
No 315
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=3.1e-09 Score=93.92 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.|+..|.+++..+|. +...+..+...|.+.|++++|+..|+++++... .+..+|..+..+|.+
T Consensus 14 e~ai~~~~~a~~~~p~---------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQ---------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYEL 77 (150)
T ss_dssp HHHHHHHHHHSCSHHH---------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 9999999999987775 444567789999999999999999999999853 378899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW-FEEAKERHATLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (779)
.|++++|+..|++.++.... +..+|..+..+|.+.|++++|.+. ++++.+..+. +..+|......+...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99999999999999997533 788999999999999999876665 5888887655 77788877777776664
No 316
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=2e-07 Score=92.73 Aligned_cols=180 Identities=7% Similarity=0.001 Sum_probs=141.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-C
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM-G 380 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-g 380 (779)
-......+..++|+++++.++..+.. +..+|+..-.++...| ++++++++++.++..... +..+|+.-..++.+. +
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 33344455668999999999998643 6677898888888888 599999999999987644 888999998888887 7
Q ss_pred -CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 381 -NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME--------RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 381 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
++++++++++++.+.+.. |..+|+.-..++.+.|.++ ++++.++++++.+ ..+..+|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 899999999999988665 8888888877777777776 8888889888876 5578888888877777776
Q ss_pred -------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 004006 452 -------EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (779)
Q Consensus 452 -------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 487 (779)
++++++.+++++..... |...|+-+-..+.+.|+.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 67788888877775433 667777766666666543
No 317
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.7e-08 Score=100.19 Aligned_cols=165 Identities=7% Similarity=-0.012 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH-HHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY-SIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~ 373 (779)
+...+..+...+.+.|++++|+..|+++.+.... +...+..+..+|...|++++|..+++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4455667888889999999999999999887533 66788888999999999999999999887753 344333 3333
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-APIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 452 (779)
..+.+.++.++|+..|+++....+. +...+..++.+|...|++++|++.|+++.+.+-. .+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4466778888888888888887655 7788888888888888888888888888886421 1255677777777777777
Q ss_pred HHHHHHHHHHH
Q 004006 453 EKCLIVFERLK 463 (779)
Q Consensus 453 ~~a~~~~~~~~ 463 (779)
++|...|.+..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
No 318
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=8.1e-08 Score=91.54 Aligned_cols=188 Identities=8% Similarity=-0.050 Sum_probs=130.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh--hhHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA--IIYG 405 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 405 (779)
+...+..+...+.+.|++++|+..|+++++..... ....+..++.+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778889999999999999998864221 1367888999999999999999999999987554221 2566
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 406 NIIYAQCQ------------------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 406 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
.++.++.+ .|++++|+..|+++++.. +.+..++..+.... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH----
Confidence 66666654 456666777776666652 22222222111100 0000000
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN----MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (779)
.....+...|.+.|++++|+..|+++.+.. |+ ...+..+..+|.+.|++++|...++.+...+..
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 112356788999999999999999998863 33 256888999999999999999999999887543
No 319
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=1.8e-08 Score=111.16 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 263 REWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (779)
Q Consensus 263 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (779)
.+.|...|.+++..+|. +...|..+...|.+.|++++|+..|++..+... .+...+..+..+|.
T Consensus 5 ~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQ---------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRW 68 (568)
T ss_dssp ----------------C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 38899999999999887 667788899999999999999999999998753 36788999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CChHH
Q 004006 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT---RNMER 419 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 419 (779)
..|++++|.+.|++.++... .+...+..+..+|.+.|++++|++.|+++.+.... +..++..++.++... |++++
T Consensus 69 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHH
Confidence 99999999999999998753 36889999999999999999999999999988654 788899999999999 99999
Q ss_pred HHHHHHHHHHcC
Q 004006 420 AEALVRDMEEEG 431 (779)
Q Consensus 420 A~~~~~~~~~~~ 431 (779)
|.+.+++..+.+
T Consensus 147 A~~~~~~al~~~ 158 (568)
T 2vsy_A 147 LSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 320
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=9.9e-09 Score=93.62 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG-FA 377 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~ 377 (779)
+..+...+.+.|++++|+..|+++.+... .+...+..+..+|...|++++|+..|++..+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 33455666667777777777766655421 245566666666666777777777766665542 133332222211 11
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCL 456 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 456 (779)
..+...+|+..|+++.+..+. +...+..++.++...|++++|++.|+++.+.+-.. +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 212223345555555554333 45555555555555555555555555555543111 1234455555555555555555
Q ss_pred HHHHHH
Q 004006 457 IVFERL 462 (779)
Q Consensus 457 ~~~~~~ 462 (779)
..|.+.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 321
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=2.2e-08 Score=100.63 Aligned_cols=164 Identities=12% Similarity=0.009 Sum_probs=89.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (779)
.|++++|.+++++..+.... . .+...+++++|...|++. +..|...|++++|+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 46678888888877664211 1 011146777777777654 3456677888888888
Q ss_pred HHHHHHcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 004006 389 FEEAKERHATL-----NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI---DA--PIDIYHMMMDGYTIIGNEEKCLIV 458 (779)
Q Consensus 389 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~ 458 (779)
|.++.+..... -..+|..++.+|.+.|++++|++.|++..+... .+ ...+++.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77776542110 133566667777777777777777766654310 00 12334445555555 666666655
Q ss_pred HHHHHHCCCCC-----CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004006 459 FERLKECGFSP-----SIISYGCLINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 459 ~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (779)
|++..+..... ...++..+..+|.+.|++++|+..|++..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55544321000 02334444455555555555555554443
No 322
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=1.5e-08 Score=92.46 Aligned_cols=162 Identities=7% Similarity=0.015 Sum_probs=109.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA-Q 411 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 411 (779)
.+..+...+...|++++|+..|++.++... -+...+..+..+|.+.|++++|+..|+++....+ +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 455666777788888888888888776532 3677888888888888888888888888776643 44333332222 1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A 490 (779)
...+...+|+..|++..+.+ +.+...+..+...+...|++++|+..|+++.+....+ +...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345677777777654 4456777777777777888888888877777654322 244667777777777777777
Q ss_pred HHHHHHHH
Q 004006 491 LEVSKVMK 498 (779)
Q Consensus 491 ~~~~~~m~ 498 (779)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 323
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=2.7e-08 Score=109.83 Aligned_cols=155 Identities=10% Similarity=-0.114 Sum_probs=122.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (779)
.|++++|+..|+++.+... .+...|..+...|...|++++|++.|++.++... .+...+..+..+|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999988743 3678899999999999999999999999998753 3688999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 004006 389 FEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNEEKCLIVFERLKEC 465 (779)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 465 (779)
|+++.+.... +...+..++.+|.+.|++++|++.|++..+.+ +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999998655 78899999999999999999999999999875 55678889999999999 9999999999999886
Q ss_pred CC
Q 004006 466 GF 467 (779)
Q Consensus 466 g~ 467 (779)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 324
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=2.2e-08 Score=100.66 Aligned_cols=198 Identities=11% Similarity=0.031 Sum_probs=113.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004006 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK-LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (779)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 562 (779)
.|++++|.+++++..+..-. .+.+ .+++++|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46677777777766553111 1222 46677777666554 345667788888887
Q ss_pred HHHHHHHcCCCC-----CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHH
Q 004006 563 IVKEMQKERHRP-----TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC---IP--TVHTFNALILGLVEKRQMEKAIE 632 (779)
Q Consensus 563 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~A~~ 632 (779)
.|.+........ -..+|..+...|.+.|++++|+..|++..+... .+ ...+++.+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 777765432111 123555666667777777777777776654311 01 12355566666666 77777777
Q ss_pred HHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChHHHHH
Q 004006 633 ILDEMTLAGISP-N----EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE-LD----VFTYEALLKACCKSGRMQSALA 702 (779)
Q Consensus 633 ~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 702 (779)
+|++.++..... + ..++..+...|...|++++|+..|+++++.... .+ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777665421000 1 245666666677777777777777766653110 01 2245555556666677777777
Q ss_pred HHHHHH
Q 004006 703 VTKEMS 708 (779)
Q Consensus 703 ~~~~~~ 708 (779)
.+++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777666
No 325
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=4.2e-08 Score=97.45 Aligned_cols=167 Identities=5% Similarity=-0.042 Sum_probs=134.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..+...+...|++++|...|++.++... -+...+..++..|.+.|++++|+.+|+++....+. ..........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHH
Confidence 456677788888899999999999999988753 37888999999999999999999999999876542 2333444445
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHH
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~ 488 (779)
.+.+.++.++|++.|++..+.. +.+...+..+...|...|++++|+..|.++.+..... +...+..++.++...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 5778888888999999988875 5678888999999999999999999999988864321 2567888899999999999
Q ss_pred HHHHHHHHHHH
Q 004006 489 KALEVSKVMKS 499 (779)
Q Consensus 489 ~A~~~~~~m~~ 499 (779)
+|...|++...
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 98888876543
No 326
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=3.2e-08 Score=84.13 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+.+.|.+.|++++|+..|+++++... .+..+|..+..+|.+.|++++|++.|++.++.+. .+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 44566677788888888888888888777642 3667777777888888888888888888777643 256777777778
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (779)
|...|++++|++.|+++.+..+. +..++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 88888888888888877776544 445544443
No 327
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.82 E-value=2.1e-06 Score=85.11 Aligned_cols=167 Identities=7% Similarity=-0.102 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHCCCCCCHhh
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG----------DMHRARQTFENMRARGIEPTLHV 333 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~ 333 (779)
+.|...+++++..||.+. ..|+.--..+...| .+++++.+++.+...+.+ +..+
T Consensus 47 ~eaL~~t~~~L~~nP~~y---------------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~a 110 (331)
T 3dss_A 47 ESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGT 110 (331)
T ss_dssp HHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 579999999999999743 22332222222222 267899999999887543 7788
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 334 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
|+.-.-++.+.+ ++++++++++++++.... |...|+.-.-.+...|. ++++++.++++.+.++. |..+|+....+
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 988888888887 489999999999987644 88899998888888888 68999999999988766 88888887777
Q ss_pred HHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 411 QCQT--------------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 411 ~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
+... +.++++++.+.+.+..+ +.|..+|+.+-..+...
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6655 34677777777777764 55666666554444433
No 328
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.79 E-value=5.8e-09 Score=98.76 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=61.5
Q ss_pred CChHHHHHHHhccCCeeEEEEecCC---CCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCCc
Q 004006 163 IKKHLVMEFFRQFGPIKNVILIKGY---NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (779)
Q Consensus 163 ~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~~ 234 (779)
-.+++|++.|++||.|.++.|+++. +.+|+++|++||+|.+.++|.+|+..| ||..++||.|+|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l--~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh--cCceECCeEEEEEEcCHH
Confidence 3457899999999999999998541 345689999999999999999999999 999999999999997543
No 329
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=3.9e-07 Score=85.89 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.+..+...+...|++++|+..|+++. .++..+|..+..+|...|++++|++.|++.++.. +.+...|..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35567788889999999999998874 4578889999999999999999999999998875 336888999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 378 KMGNAEAADHWFEEAKERHATLNA----------------IIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
+.|++++|+..|+++.+.... +. .++..++.+|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999886433 22 678888888889999999999998888764
No 330
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=2.4e-08 Score=95.97 Aligned_cols=183 Identities=9% Similarity=-0.028 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC------
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLM-------VNYYARRGDMHRARQTFENMRARGIEPT------ 330 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~------ 330 (779)
+.|.+.|.++++.+|. ....|..+ ...+.+.++..+++..+.+.++. .|+
T Consensus 23 ~~A~~~F~~a~~~dP~---------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~ 85 (282)
T 4f3v_A 23 ARSLDLFTEITNYDES---------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEE
T ss_pred HHHHHHHHHHHHhChh---------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--Chhhhhhhh
Confidence 8999999999999997 45556656 46666666677777777766552 221
Q ss_pred ----------------HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 331 ----------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 331 ----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
...+-.+..++...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+....
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 1233446677888899999999998887754 3433777777788899999999999986654
Q ss_pred cCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 395 RHATL--NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 395 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
.. .+ ...++..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 164 ~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 164 WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 31 11 134778888888889999999999888875433232 3456677777888888888888888887753
No 331
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=1.9e-07 Score=79.24 Aligned_cols=98 Identities=12% Similarity=-0.000 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
..+......|.+.|++++|++.|++.++... .+..+|..+..+|.+.|++++|+..|+++++.+.. +..+|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 3455566666677777777777777666542 25666666777777777777777777777666444 566666666667
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 004006 412 CQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~ 431 (779)
...|++++|++.|++..+.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 77777777777766666653
No 332
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=2.3e-08 Score=87.74 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...+..+...|.+.|++++|+..|+++++.+. .+...|..+..+|...|++++|+..|++.++.... +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 334455566666677777777777777666542 25566666666666667777777777666665422 4566666666
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 004006 375 GFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+|.+.|++++|+..|+++.+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666665
No 333
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=2.2e-08 Score=101.82 Aligned_cols=148 Identities=14% Similarity=0.037 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------------
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT------------- 330 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------------- 330 (779)
+.|...|.+.+..++. +...|..+...|.+.|++++|+..|+++++......
T Consensus 130 ~~A~~~~~~a~~~~p~---------------~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~ 194 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLE---------------QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194 (336)
T ss_dssp ECCCCGGGCCHHHHHH---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH
T ss_pred ccccchhcCCHHHHHH---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence 5555555555554443 455677889999999999999999999998743221
Q ss_pred -HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 331 -LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 331 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
..+|..+..+|.+.|++++|+..|++.++... .+...|..+..+|...|++++|+..|+++.+..+. +..++..+..
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 272 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 35666677777777777777777777766542 25666777777777777777777777777666443 5566666666
Q ss_pred HHHhcCChHHH-HHHHHHHH
Q 004006 410 AQCQTRNMERA-EALVRDME 428 (779)
Q Consensus 410 ~~~~~g~~~~A-~~~~~~~~ 428 (779)
++.+.|+.++| ..+|+.|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666 33444443
No 334
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=7e-06 Score=81.31 Aligned_cols=192 Identities=8% Similarity=-0.056 Sum_probs=140.0
Q ss_pred HHHHHcCChH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 304 NYYARRGDMH-RARQTFENMRARGIEPTLHVYTNLIHAYAVGRD----------MEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 304 ~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
....+.|.+. +|+.+++.++..+.. +..+|+.--.++...+. +++++.+++.++..... +..+|+.-
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR 114 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHR 114 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3344566665 899999999987543 55667776666655444 68899999999887544 88999999
Q ss_pred HHHHHccCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 373 VGGFAKMGN--AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN-MERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 373 ~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
..++.+.|+ +++++.+++++.+.++. |..+|+.-..++...|. ++++++.++++++.+ +.+..+|+.....+...
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 888888884 89999999999998766 88899988888888888 589999999999886 56788888777666655
Q ss_pred --------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHC
Q 004006 450 --------------GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI-----------GKVSKALEVSKVMKSS 500 (779)
Q Consensus 450 --------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 500 (779)
+.++++++.+++....... |...|+-+--.+.+. +.++++++.++++.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777765332 566665444444333 2355566666665553
No 335
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=8.9e-07 Score=83.39 Aligned_cols=124 Identities=10% Similarity=-0.087 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG 660 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 660 (779)
.+...+...|++++|+..|+++. .++...|..+...|...|++++|+..|++.++.. +.+...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 33444555555555555555442 2344555555555555555555555555555432 233445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004006 661 DTGKAFEYFTKLRNEGLELDV----------------FTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (779)
Q Consensus 661 ~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (779)
++++|+..|+++++... .+. ..+..+..+|...|++++|...++++.+.
T Consensus 86 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555555554421 111 34444555555555555555555555443
No 336
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=4.4e-07 Score=81.47 Aligned_cols=129 Identities=16% Similarity=0.048 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..|..+...+...|++++|+..|++..+... .+..++..+..++...|++++|+..|++.++.. +.+...|..++.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4566677888888888888888888877642 256777778888888888888888888887764 23567777788888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIY--GNIIYAQCQTRNMERAEALVRDME 428 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 428 (779)
...|++++|+..|+++.+.... +...+ ..++..+...|++++|++.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887776443 44444 333333566677777776666544
No 337
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=4.9e-07 Score=90.13 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CC--HhH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTL-----HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE---MS--LVT 368 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~--~~~ 368 (779)
+...+..+...|++++|++.++...+....... ..+..+...+...|++++|+..|++.++.... .. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455555666666666666555544211000 11222333444445555555555555432110 00 224
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (779)
++.++..|...|++++|+..|+++.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555544
No 338
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=3.9e-07 Score=90.82 Aligned_cols=161 Identities=9% Similarity=-0.050 Sum_probs=75.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCC-CCH----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-C----hhhHHHH
Q 004006 338 IHAYAVGRDMEEALSCVRKMKEEGIE-MSL----VTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNI 407 (779)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~g~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l 407 (779)
+..+...|++++|.+++++..+.... ++. ..+..+...+...|++++|+..|+++....... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444455555555555554442111 110 112234444444455555555555555422111 1 1135555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHH
Q 004006 408 IYAQCQTRNMERAEALVRDMEEE-----GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSPS-IISYGC 476 (779)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~ 476 (779)
+.+|...|++++|+..|+++.+. +. .....+++.+...|.+.|++++|+..+++..+. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555555555555555555421 10 111234555556666666666666666555432 11111 345566
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHH
Q 004006 477 LINLYTKIGK-VSKALEVSKVMK 498 (779)
Q Consensus 477 li~~~~~~g~-~~~A~~~~~~m~ 498 (779)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666665554
No 339
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=2.6e-06 Score=84.82 Aligned_cols=126 Identities=8% Similarity=-0.060 Sum_probs=65.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-AP----IDIYHM 441 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 441 (779)
.+..+...|++++|+.+++++.+..... + ...+..++..|...+++++|+..|+++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777788888888888777643211 1 112223555555666667777766666653211 11 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKEC-----GFSP-SIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~-----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
+...|...|++++|+..|+++.+. +..+ ...++..+..+|.+.|++++|+..+++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555666666666666666555421 0000 1123444444455555555555444443
No 340
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=6.6e-07 Score=80.27 Aligned_cols=129 Identities=11% Similarity=-0.061 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
..+..+...+...|++++|...|++.++.. +.+..++..++.+|...|++++|+..|+++.+.... +..++..++.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666666777777777777777777653 225667777777777777777777777777766433 566677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYH--MMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
...|++++|.+.|+++.+.. +.+...+. .++..+...|++++|+..+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776653 22333332 22333555666666666665543
No 341
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=2.1e-07 Score=81.67 Aligned_cols=111 Identities=10% Similarity=-0.039 Sum_probs=89.6
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChH
Q 004006 269 EFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDME 348 (779)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (779)
.|.+++..+|. +...+..+...+.+.|++++|+..|++++..+. .+...|..+..+|...|+++
T Consensus 9 ~~~~al~~~p~---------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 9 TIAMLNEISSD---------------TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp SHHHHTTCCHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHcCCHh---------------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHH
Confidence 46677777765 445567788888899999999999999888753 36778888888898999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 349 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+|+..|++.++... -+...+..+..+|...|++++|+..|+++.+..
T Consensus 73 ~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 73 LAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999888653 367788888889999999999999998888764
No 342
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=1.7e-07 Score=82.14 Aligned_cols=97 Identities=12% Similarity=-0.053 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 367 VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
..+..+...+.+.|++++|+..|+++...++. +...|..++.+|...|++++|++.|++..+.+ +.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34455555555555555555555555555433 45555555555555555555555555555543 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004006 447 TIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~ 465 (779)
...|++++|+..|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 343
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=1.2e-07 Score=93.70 Aligned_cols=98 Identities=17% Similarity=0.029 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...+.+.|++++|+..|+++++... .+...|..+..+|.+.|++++|+..+++.++... -+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 34455566666666666666666666666532 2455666666666666666666666666665432 245566666666
Q ss_pred HHccCCHHHHHHHHHHHHHc
Q 004006 376 FAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~ 395 (779)
|...|++++|+..|+++.+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 344
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=9.1e-07 Score=74.69 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|+.+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3456667777777777777777777777653 2255667777777777777777777777776653 2356666777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
|.+.|++++|+.+|+++.+.... +...+..+..++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 77777777777777777665433 4444544444443
No 345
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=2e-06 Score=85.65 Aligned_cols=159 Identities=9% Similarity=0.001 Sum_probs=81.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--HHHHHH
Q 004006 617 LILGLVEKRQMEKAIEILDEMTLAGISPNE-----HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE---LD--VFTYEA 686 (779)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~ 686 (779)
.+..+...|++++|++.+.+.++....... ..+..+...+...|++++|+..+++.++.... .. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344455555555555555555443211110 11223344455556666666666665543111 11 335566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HHHHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQ--KIPRN----TFVYNILIDGWARRGDVWEAADLMQQMKQEG----VQPD-VHTYT 755 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~pd-~~~~~ 755 (779)
++..|...|++++|..+++++.+. ..+.+ ..+|..++.+|.+.|++++|++++++.++.. .... ..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 666666666666666666665421 00111 1355666666666666666666666655421 1011 44566
Q ss_pred HHHHHHHhcCCcchH-HHhHh
Q 004006 756 SFINACKCSKSNQRN-GRSWS 775 (779)
Q Consensus 756 ~l~~a~~~~g~~~~a-~~~~~ 775 (779)
.+..+|.+.|+.++| ..+++
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 666666666666666 54444
No 346
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=6e-07 Score=76.93 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..+...+.+.|++++|+..|+++.+... .+..++..+..+|...|++++|+..|++.++... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 455677778888888888888888888877642 2567777777778888888888888888777542 35677777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (779)
+|.+.|++++|+..|+++.+.... +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777888888888888777766433 4455555655555444
No 347
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=1.9e-07 Score=92.27 Aligned_cols=99 Identities=17% Similarity=0.062 Sum_probs=76.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..+...+.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|+..|+++.+.... +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 445677777788888888888888888877642 26777888888888888888888888888776544 6777888888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 004006 410 AQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~ 430 (779)
+|...|++++|+..|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888777764
No 348
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=1.3e-06 Score=73.68 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=67.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...|..+...+...|++++|.++|+++++.. +.+..++..++..|.+.|++++|+.+|+++.+.... +..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 3456666666666777777777777666653 225566666666666667777777766666665332 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
|...|++++|...|+++.+.. +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 666666666666666665543 22333344443333
No 349
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=8.6e-07 Score=75.58 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...+...|++++|+..|+++.+.. ..+...+..+..++...|++++|++.+++.++.. +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3456667777778888888888888877653 2256677777777777788888888887777653 2256677777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (779)
|.+.|++++|+..|+++.+.... +...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 77777777777777777766433 556666666666665543
No 350
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=2.1e-07 Score=81.11 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...+..+...+.+.|++++|+..|++++..+. .+...|..+..+|...|++++|+..|++.++.+. -+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 344566677888889999999999999888753 3677788888888888999999999998888753 36777888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcC
Q 004006 375 GFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+|...|++++|+..|+++.+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888999999998888887753
No 351
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=8.5e-07 Score=75.98 Aligned_cols=117 Identities=11% Similarity=-0.044 Sum_probs=71.0
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...|..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|+..|+++.+.... +...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 34456666666667777777777777766653 225666666666676777777777777766665433 5556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
+|.+.|++++|++.|++..+.. +.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666666543 22334444444444433
No 352
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=6.7e-07 Score=81.37 Aligned_cols=118 Identities=10% Similarity=0.185 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA-YA 342 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~ 342 (779)
+.|...|.+++..+|. +...|..+...|...|++++|+..|+++.+... .+...+..+..+ +.
T Consensus 27 ~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQ---------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYY 90 (177)
T ss_dssp CCCCHHHHHHHHHCCS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 8889999999988886 666788888999999999999999999887643 366777778877 77
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 343 VGRDM--EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 343 ~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
..|++ ++|+..|+++++... -+...+..++.+|...|++++|+..|+++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred hcCCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888 999999999888643 36778888888899999999999999988887543
No 353
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=5.3e-07 Score=82.06 Aligned_cols=123 Identities=10% Similarity=0.050 Sum_probs=89.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHccCCH--
Q 004006 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG-FAKMGNA-- 382 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~g~~-- 382 (779)
+...|++++|+..|++..+... .+...|..+..+|...|++++|+..|++.++... .+...+..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 3456778888888888777642 3667788888888888888888888888877542 366777777777 6778887
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
++|+..|+++.+..+. +...+..++.+|...|++++|+..|+++.+..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888877544 66777788888888888888888888887764
No 354
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=3.9e-07 Score=85.04 Aligned_cols=121 Identities=14% Similarity=0.027 Sum_probs=69.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHccCC
Q 004006 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GI-EMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l~~~~~~~g~ 381 (779)
...|++++|+++++.+... ......++..+...+...|++++|+..+++.++. +. .....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755554332 2224456777777777777887777777776651 11 1124556666777777777
Q ss_pred HHHHHHHHHHHHHc---CC-C--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004006 382 AEAADHWFEEAKER---HA-T--LNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (779)
Q Consensus 382 ~~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (779)
+++|+..|++.... .. . ....++..+..++...|++++|++.+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777766553 11 1 112345555666666666666666665554
No 355
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=8.1e-07 Score=85.34 Aligned_cols=187 Identities=9% Similarity=-0.087 Sum_probs=120.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHH-------HHHHHccCChHHHHHHHHHHHHcCCCCC---------------
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNL-------IHAYAVGRDMEEALSCVRKMKEEGIEMS--------------- 365 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 365 (779)
+.++...|++.|.++.+.... ....|+.+ ...+.+.++..+++..+..-++. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 578899999999999887533 55677777 46666666666666655555441 111
Q ss_pred -------HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--Ch
Q 004006 366 -------LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PI 436 (779)
Q Consensus 366 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 436 (779)
...+..+...+...|++++|.++|+.+...+.. +. ....+...+.+.+++++|+..|+...... .+ ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 223445666777788888888888877665432 23 66667777778888888888887543321 11 02
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 437 DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
.++..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3566667777777777777777777764322132 234555666677777777777777777765
No 356
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=2.3e-07 Score=81.41 Aligned_cols=98 Identities=12% Similarity=-0.059 Sum_probs=60.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...+..+...+...|++++|+..|++.+.... .+...|..+..+|...|++++|+..|+++....+. +...+..++.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 34455556666666666666666666665532 25666666666666666666666666666665433 55566666666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 004006 411 QCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~ 430 (779)
|...|++++|++.|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 357
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=2.2e-06 Score=72.91 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
..+..+...+...|++++|..+++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 455556666666777777777777766654 3356666777777777777777777777776653 44566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 004006 727 ARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSN 767 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~ 767 (779)
.+.|++++|.+++++..+.. ..+...+..+..++...|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 77777777777777776642 22455666676677666654
No 358
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=1.2e-06 Score=89.06 Aligned_cols=151 Identities=13% Similarity=-0.032 Sum_probs=96.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HhHHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS--------------LVTYSIIVG 374 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~l~~ 374 (779)
.+++++|+..|+...+.. ..+...+..+...|.+.|++++|+..|++.++...... ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344555655555544321 11445677778888888888888888888877642211 366777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
+|.+.|++++|+..|+++++.... +..+|..++.+|...|++++|+..|+++.+.. +.+..++..+..++...|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766543 66667777777777777777777777766653 3345566666666666666665
Q ss_pred H-HHHHHHH
Q 004006 455 C-LIVFERL 462 (779)
Q Consensus 455 a-~~~~~~~ 462 (779)
+ ...|.+|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5 3344444
No 359
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=6.9e-07 Score=83.35 Aligned_cols=156 Identities=10% Similarity=-0.025 Sum_probs=95.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCH
Q 004006 588 RAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA----GIS-PNEHTYTTIMHGYASLGDT 662 (779)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~ 662 (779)
..|++++|.++++.+... .......+..+...+...|++++|+..+++.++. +.. .....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 2224556666666777777777777777665541 111 1234566677777777788
Q ss_pred HHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC
Q 004006 663 GKAFEYFTKLRNE----GLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI-PRN----TFVYNILIDGWARRGD 731 (779)
Q Consensus 663 ~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 731 (779)
++|...+++.++. +.. .....+..+...+...|++++|...+++..+..- ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777776653 101 1234567777788888888888888877653200 112 2245777888888888
Q ss_pred HHHHHHHHHHHHH
Q 004006 732 VWEAADLMQQMKQ 744 (779)
Q Consensus 732 ~~~A~~~~~~m~~ 744 (779)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
No 360
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.54 E-value=1.2e-07 Score=88.25 Aligned_cols=120 Identities=10% Similarity=-0.026 Sum_probs=59.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS----------------LVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.+..+...+...|++++|+..|++.++.... + ...|..+..+|.+.|++++|+..|+++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3444444555555555555555555443111 1 1445555555555566666666655555543
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 397 ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
.. +..++..++.+|...|++++|++.|++..+.. +.+..++..+..++...++.+++
T Consensus 119 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 32 44555555555555555555555555555542 22344444444444444444333
No 361
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.8e-06 Score=72.04 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..|..+...+.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|+..|++.++... -+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 3456667777777777777777777777642 2566777777777777777777777777777542 2566777777777
Q ss_pred HccCCHHHHHHHHHHHHHc
Q 004006 377 AKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~ 395 (779)
...|++++|+..|+++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777777665
No 362
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.6e-06 Score=71.38 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
..|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...+++..+.+ +.+...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345566666777777777777777777664 4466777777777777777777777777777654 55666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 004006 727 ARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~ 745 (779)
...|++++|++.+++.++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777777663
No 363
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=2.5e-06 Score=74.23 Aligned_cols=98 Identities=9% Similarity=-0.073 Sum_probs=72.6
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...+..+...+.+.|++++|+..|++.+..+. .+...|..+..+|.+.|++++|+..|+++...++. +...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 34555666777777888888888888777643 36777777788888888888888888888777544 66677777778
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 004006 411 QCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~ 430 (779)
|...|++++|++.|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888777665
No 364
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.45 E-value=2.9e-06 Score=75.90 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..+...|.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|+..|++.++... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 345567778888888888888888888887642 2667788888888888888888888888887643 35777888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC
Q 004006 375 GFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
+|.+.|++++|+..|+++.+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888776443
No 365
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=3e-06 Score=78.69 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---------------HhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPT---------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 361 (779)
..+..+...+.+.|++++|+..|+++++...... ..+|..+..+|.+.|++++|+..+++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3466688899999999999999999998632211 2688889999999999999999999999874
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH-HHHHHHHHc
Q 004006 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE-ALVRDMEEE 430 (779)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 430 (779)
+.+...+..+..+|...|++++|+..|+++.+.... +..++..+..++...++.+++. ..|..+...
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 347889999999999999999999999999988654 7788888888888877777766 555555543
No 366
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=8.2e-06 Score=67.82 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+..+...+...|++++|+..|+++..... .+...+..+..++...|++++|...+++.++... .+...+..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 4456677777777888888888877776532 2566677777777777777777777777776532 2566677777777
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
...|++++|+..|+++.+.... +...+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 7777777777777777665433 33444333
No 367
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.4e-06 Score=67.01 Aligned_cols=72 Identities=17% Similarity=0.342 Sum_probs=66.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhcc-----CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQF-----GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
.+++-+-|||..+++.-++.+...+ |.|..+.++.| -|-|+|+|.+...|.+|.=++ ||..|+||.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-------H~GAivef~d~~~AgKasLaL--~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-------FNGAIIIFRDSKFAAKMLMIL--NGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-------TTEEEEECSCHHHHHHHHHHH--SSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-------CCceEEEEccchhhHHHHhhc--CCeeecCeE
Confidence 4588999999999999999999999 99999999998 789999999999999998777 999999999
Q ss_pred EEEEec
Q 004006 226 LTVKLD 231 (779)
Q Consensus 226 ~~v~~~ 231 (779)
|++.=.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999743
No 368
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=3.3e-06 Score=75.59 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=83.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...|..+...+.+.|++++|++.|++.++... -+...|..+..+|.+.|++++|+..|+++.+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 445677788888889999999999999888643 37888888889999999999999999998887654 7788888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 004006 410 AQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
+|...|++++|++.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999998888764
No 369
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=5e-06 Score=70.50 Aligned_cols=105 Identities=9% Similarity=0.035 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 004006 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--IPRN----TFVYNI 721 (779)
Q Consensus 648 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~ 721 (779)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++.+ ...+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34455556666666666666666666554 3355566666666666666666666666655421 0111 135566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004006 722 LIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755 (779)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 755 (779)
++.++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 667777777777777777776653 45554443
No 370
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=4.8e-06 Score=70.62 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (779)
+..|.+.|.+.|++++|+..|+++++... .+...|+.+..+|.+.|++++|++.|++.+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444444444444444444321 133344444444444444444444444443
No 371
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=9e-06 Score=88.34 Aligned_cols=170 Identities=6% Similarity=-0.081 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHhh
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD----------MHRARQTFENMRARGIEPTLHV 333 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~ 333 (779)
++|.+.+++++..+|. +...|+.--.++...|+ ++++++.++.+.+.+.+ +..+
T Consensus 46 eeal~~~~~~l~~nP~---------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~a 109 (567)
T 1dce_A 46 ESVLELTSQILGANPD---------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGT 109 (567)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHHCch---------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 6899999999999997 44556655566666666 89999999999998644 7889
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 334 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
|+.-.-++.+.+ ++++++++++++++.... +...|+.....+.+.| .++++++.++++.+.++. |..+|+....+
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHH
Confidence 999999999999 779999999999998644 8999999999999999 899999999999988766 88899888887
Q ss_pred HHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 411 QCQT--------------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 411 ~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
+.+. +.++++++.+++....+ +.+..+|+.+...+.+.++.
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 7764 44677888887777764 55667777776666666653
No 372
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.36 E-value=6e-07 Score=95.52 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
....|..+...|.+.|++++|+..|+++++...... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677788999999999999999999988632211 244445555555555555555555555544
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004006 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (779)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (779)
.. .+...|..+..+|...|++++|+..|+++.+..+. +..++..+..++.+.++.+++.
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 32 24444555555555555555555555555544322 3344444444444444444433
No 373
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=5e-06 Score=70.71 Aligned_cols=112 Identities=8% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 004006 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI--PRN----TFVYNI 721 (779)
Q Consensus 648 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 721 (779)
.|..+...+...|++++|..+|+++.+.. +.+...+..+..+|...|++++|..+++++....- ..+ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45555566666666666666666666554 33556666666666677777777777666654320 111 556667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 722 LIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACK 762 (779)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 762 (779)
++.+|.+.|++++|.+.++++.+. .|+...+..+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 777777777777777777777764 345555555544443
No 374
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=6.5e-06 Score=70.87 Aligned_cols=97 Identities=19% Similarity=0.043 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..+...+...|++++|+..|++++.... .+...|..+..+|...|++++|+..|++.++.+. .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444444444444555555554444444321 1334444444444444444444444444444321 13344444444
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 004006 375 GFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~ 393 (779)
+|...|++++|+..|+++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444443
No 375
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.2e-05 Score=70.05 Aligned_cols=109 Identities=14% Similarity=0.043 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
+...+..+...+.+.|++++|+..|++..+. .|+ ...|..+..+|...|++++|+..+++.++... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 5667777888888889999999999888876 344 56777777888888888888888888777632 2567777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
.+..+|...|++++|+..|+++.+.... +...+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 7888888888888888888887776433 34444333
No 376
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=2.5e-05 Score=64.78 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004006 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (779)
Q Consensus 649 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (779)
+..+...+...|++++|..+|+++.... +.+...+..+..+|...|++++|...+++..+.. +.+...+..++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444444555555555555544432 2244444555555555555555555555554432 3344445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 004006 729 RGDVWEAADLMQQMKQ 744 (779)
Q Consensus 729 ~g~~~~A~~~~~~m~~ 744 (779)
.|++++|.+++++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555544
No 377
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=1.2e-05 Score=69.18 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004006 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (779)
Q Consensus 645 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (779)
+...|..+...+...|++++|+..|++++... +.+...+..+..+|...|++++|...+++..+.+ +.+...|..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666666666666666666654 3356666666666777777777777777666654 445666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004006 725 GWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~ 744 (779)
+|...|++++|+..|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777776654
No 378
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=5.1e-06 Score=69.74 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=41.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (779)
.+...+.+.|++++|+..|+++++... .+...|..+..++...|++++|+..|++.++.... +...+..+..+|.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 344444444445555554444444321 13344444444444444444444444444443211 3444444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 004006 381 NAEAADHWFEEAKE 394 (779)
Q Consensus 381 ~~~~A~~~~~~~~~ 394 (779)
++++|+..|+++.+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 379
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=5.1e-06 Score=69.74 Aligned_cols=97 Identities=9% Similarity=-0.075 Sum_probs=86.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+..+...+.+.|++++|+..|++.++... -+...|..+..++...|++++|+..|+++.+..+. +...+..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 456677888899999999999999998753 37899999999999999999999999999998765 7889999999999
Q ss_pred hcCChHHHHHHHHHHHHcC
Q 004006 413 QTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~ 431 (779)
..|++++|++.|++..+.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 380
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.8e-05 Score=68.94 Aligned_cols=98 Identities=10% Similarity=-0.044 Sum_probs=69.2
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYG 405 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (779)
+...+..+...+...|++++|+..|++.++.. |+ ...|..+..+|...|++++|+..|+++.+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 45567777777777788888888887777653 33 566777777777777777777777777766433 566677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 406 NIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
.++.+|...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777665
No 381
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=8.1e-06 Score=69.37 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CC----HhHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MS----LVTYS 370 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~~ 370 (779)
..|..+...+...|++++|+..|+++.+.. ..+...+..+..+|...|++++|...+++.++.... .+ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 446667777788888888888888877764 235667777777777778888888888777664311 11 55666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
.++.+|.+.|++++|+..|+++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777777777777777777665
No 382
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.1e-05 Score=81.93 Aligned_cols=164 Identities=10% Similarity=0.020 Sum_probs=80.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhH
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNA-----IIYGNIIYAQCQTRNMERAEALVRDMEEE----GID-APIDIY 439 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~ 439 (779)
..++..|.+.|++++|.+.+.++......... .+.+.+...+...|++++|.+++.+.... +.. ....++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 34455555555555555555544332111110 11222233333445555555555554431 111 112345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHH
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKEC--GF--SP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS--GIKHN----MKT 508 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~~--g~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~ 508 (779)
..+...|...|++++|..++.++... +. .+ ...++..++..|...|++++|..++++.... .+..+ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 55666666666666666666665432 11 11 1335666667777777777777776665432 11111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 509 YSMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
+..+...+...+++++|...|.+..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555566677777766665554
No 383
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=8.6e-06 Score=66.95 Aligned_cols=98 Identities=10% Similarity=-0.072 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LNAIIYGNIIYA 410 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~ 410 (779)
..+..+...+...|++++|...|++.++... .+...+..+..+|...|++++|+..|+++.+.... .+..++..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555555555555555555555554421 24445555555555555555555555555544211 034444555555
Q ss_pred HHhc-CChHHHHHHHHHHHHc
Q 004006 411 QCQT-RNMERAEALVRDMEEE 430 (779)
Q Consensus 411 ~~~~-g~~~~A~~~~~~~~~~ 430 (779)
|... |++++|++.++++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555554443
No 384
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=5.8e-05 Score=79.85 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004006 514 NGFLKLKDWANVFAVFEDVMRDGLKPDV----------------VLYNNIIRAFCGMGNMDRAIHIVKEMQ 568 (779)
Q Consensus 514 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 568 (779)
..+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+++..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455667777777777766665332110 123445555555555555555555443
No 385
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=9.3e-06 Score=86.64 Aligned_cols=117 Identities=13% Similarity=-0.068 Sum_probs=92.1
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
|.+.|++ +.|.+.|.++++.+|. +...|..+..+|.+.|++++|+..|+++++...
T Consensus 16 ~~~~g~~---------~~A~~~~~~Al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 71 (477)
T 1wao_1 16 YFKAKDY---------ENAIKFYSQAIELNPS---------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK 71 (477)
T ss_dssp TTTTTCH---------HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHhCCH---------HHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 5556666 9999999999999886 677788899999999999999999999998753
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HHccCCHHHHHHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--FAKMGNAEAADHWFE 390 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 390 (779)
.+..+|..+..+|...|++++|++.|++.++.... +...+..+..+ +.+.|++++|++.++
T Consensus 72 -~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 72 -KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 36778888999999999999999999998886432 45566666666 788899999999888
No 386
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=4.9e-05 Score=82.54 Aligned_cols=174 Identities=7% Similarity=-0.057 Sum_probs=129.1
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 308 RRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD----------MEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 308 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
+.|. .++|++.++++++.+.. +..+|+.--.++.+.|+ +++++++++.+++.... +..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3443 46889999999988543 66778888877777777 89999999999987644 788999999999
Q ss_pred HccC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----
Q 004006 377 AKMG--NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---- 449 (779)
Q Consensus 377 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 449 (779)
.+.| +++++++.++++.+.+.. |..+|+....++.+.| .++++++.++++++.+ +.+..+|+.....+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 9999 779999999999998766 8888988888888888 8888888888888875 55677777777666553
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 450 ----------GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 450 ----------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
+.++++++.+++....... |...|.-+...+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3345566666655554322 44455555554444444
No 387
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.21 E-value=3.5e-05 Score=65.36 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HhHHHHHH
Q 004006 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTL---HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIV 373 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~ 373 (779)
..+...+.+.|++++|+..|+.+.+.... +. ..+..+..++...|++++|+..|+++++.... + ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34556666777777777777777765322 22 35666667777777777777777777665322 3 45566667
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.+|.+.|++++|+..|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777777776653
No 388
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=9.7e-06 Score=71.97 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHccCChHHHHHHHHHHHHcC--CC---CCH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIE-PT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IE---MSL 366 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~---~~~ 366 (779)
..+..+...|...|++++|+..+++..+.... .+ ..++..+...+...|++++|.+.+++.++.. .. ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667788888889999998888887764111 01 1356667777777788888877777765421 00 013
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 367 VTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
..+..+...|...|++++|+..|++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555666666666777777666666554
No 389
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=1.4e-05 Score=65.58 Aligned_cols=96 Identities=17% Similarity=0.016 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 004006 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR--NTFVYNILIDG 725 (779)
Q Consensus 648 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 725 (779)
.+..+...+...|++++|..+++++++.. +.+...+..+..++...|++++|...++++.+.. +. +...+..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 44455555666666666666666666553 3355556666666666666666666666666543 33 45566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 004006 726 WARR-GDVWEAADLMQQMKQE 745 (779)
Q Consensus 726 ~~~~-g~~~~A~~~~~~m~~~ 745 (779)
+.+. |++++|++.++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666553
No 390
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=4.9e-05 Score=64.41 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=61.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---hhhHHHHH
Q 004006 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN---AIIYGNII 408 (779)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 408 (779)
..+...+...|++++|...|+++++.... +. ..+..++.+|.+.|++++|+..|+++....+. + ..++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34555666777777777777777665322 22 46666777777777777777777777765433 3 45566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 004006 409 YAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
.+|.+.|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777776665
No 391
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=2e-05 Score=83.65 Aligned_cols=144 Identities=11% Similarity=-0.025 Sum_probs=76.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HhHHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS--------------LVTYSIIVG 374 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~l~~ 374 (779)
.+++++|+..|+...+... -....|..+...|.+.|++++|+..|++.++...... ...|..+..
T Consensus 247 l~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544433211 1345677777778888888888888888776432211 345555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
+|.+.|++++|+..|+++++.... +..+|..+..+|...|++++|+..|+++.+.. +.+..++..+..++...++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555433 45555555555555555555555555555442 2233444444444444444443
Q ss_pred H
Q 004006 455 C 455 (779)
Q Consensus 455 a 455 (779)
+
T Consensus 404 a 404 (457)
T 1kt0_A 404 R 404 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 392
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=2.4e-05 Score=69.71 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
+..+|..+..+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..|++.++.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34566667777777777777777777776654 556667777777777777777777777777663
No 393
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=2.9e-05 Score=67.05 Aligned_cols=63 Identities=16% Similarity=-0.011 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC------CH-----hhHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEP------TL-----HVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
..+..+.+.+.+.|++++|+..|++.++..... +. ..|+.+..++.+.|++++|+..|++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345567788888899999999999888763220 11 1444455555555555555555554444
No 394
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=2.8e-05 Score=67.11 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC------C-----HhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM------S-----LVTYSIIVGGFAKMGNAEAADHWFEEAKER----- 395 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 395 (779)
..+......+.+.|++++|+..|++.++..... + ...|+.+..++.+.|++++|+..|+++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556667778888888888888887753220 1 226777777777777777777777777765
Q ss_pred --CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 396 --HATLNAIIY----GNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 396 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++. +...| +..+.++...|++++|+..|++..+.
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 443 45566 66666666667777776666666553
No 395
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.12 E-value=1.9e-05 Score=81.06 Aligned_cols=139 Identities=12% Similarity=-0.005 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..|..+...|.+.|++++|+..|+++++.- +.. ......+++ .+.. +.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHHH-HHHHHHHHHHHHHH
Confidence 346778899999999999999999988630 000 000011111 1100 11345566666666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (779)
.+.|++++|+..++++++.... +..+|..++.+|...|++++|++.|++..+.. +.+..++..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665433 55566666666666666666666666666653 334555555666666666555554
Q ss_pred H
Q 004006 457 I 457 (779)
Q Consensus 457 ~ 457 (779)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 396
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=6.5e-06 Score=87.84 Aligned_cols=121 Identities=17% Similarity=0.038 Sum_probs=79.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
+...|.+.|++++|++.|+++++... .+..+|..+..+|.+.|++++|++.+++.++... -+...|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 44556667777888888877777632 2566777777777777777777777777777642 256677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYA--QCQTRNMERAEALVR 425 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 425 (779)
+++|++.|+++.+.... +...+..+..+ +.+.|++++|+++++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777776433 44455555544 666677777777666
No 397
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.7e-05 Score=70.33 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGIS-PN----EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE-L----DVF 682 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~ 682 (779)
++..+...+...|++++|+..+++.++.... .+ ..++..+...|...|++++|..++++.++.... . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666666666666655432100 11 135556666666677777777777666543100 0 134
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQ----KI-PRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
++..+..++...|++++|...+++..+. +. ......+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666677777777777777777766532 10 01123566777777888888888888777664
No 398
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=2.3e-05 Score=80.34 Aligned_cols=139 Identities=10% Similarity=0.015 Sum_probs=105.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+..+...+.+.|++++|++.|++.++.- ++. ......+++. +.. ..+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHHHH
Confidence 46667778889999999999999887630 000 0011111111 111 115678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
+.|++++|++.+++.++.+ +.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 556788999999999999999999999999886432 67788888888888888888765
Q ss_pred H
Q 004006 493 V 493 (779)
Q Consensus 493 ~ 493 (779)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 399
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=1.9e-05 Score=70.37 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...+.+.|++++|+..|++.+..- ..+....+..... +..+. +.+...|..+..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~------------~~~~~~~~~~~~~--~~~~~----~~~~~~~~nla~~ 72 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRL------------DTLILREKPGEPE--WVELD----RKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHTSCTTSHH--HHHHH----HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------HHhcccCCCCHHH--HHHHH----HHHHHHHHHHHHH
Confidence 4456666777777777777777777766530 0000000000000 00000 1134456666666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
|.+.|++++|+..++++++.++. +..+|..++.+|...|++++|++.|++..+.
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 66666666666666666665433 5556666666666666666666666666654
No 400
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=8.4e-06 Score=82.72 Aligned_cols=148 Identities=11% Similarity=-0.038 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+..+...|.+.|++++|+..|+++++. .|+... +...+++.++...+ ....|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34666888899999999999999998876 333321 22233344433222 123677788888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG-YTIIGNEEKC 455 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 455 (779)
.+.|++++|+..|+++++.... +..+|..++.+|...|++++|+..|++..+.. +.+..++..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877543 67788888888888888888888888877653 3344555555555 3445666777
Q ss_pred HHHHHHHHHC
Q 004006 456 LIVFERLKEC 465 (779)
Q Consensus 456 ~~~~~~~~~~ 465 (779)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7788777654
No 401
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=7.4e-06 Score=68.31 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=52.6
Q ss_pred cCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 309 RGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
.|++++|+..|+++++.+. ..+...+..+..+|...|++++|+..|++.++.... +..++..+..+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4666777777777766531 123445666666677777777777777777665422 5666666667777777777777
Q ss_pred HHHHHHHHc
Q 004006 387 HWFEEAKER 395 (779)
Q Consensus 387 ~~~~~~~~~ 395 (779)
..|+++...
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766655
No 402
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=5.7e-06 Score=69.00 Aligned_cols=86 Identities=20% Similarity=0.127 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 659 LGDTGKAFEYFTKLRNEG--LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (779)
.|++++|+..|+++++.+ -+.+...+..+..+|...|++++|...++++.+.+ +.+...+..++.+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777766653 12344566667777777777777777777776654 455666777777777777777777
Q ss_pred HHHHHHHHc
Q 004006 737 DLMQQMKQE 745 (779)
Q Consensus 737 ~~~~~m~~~ 745 (779)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 403
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=4e-05 Score=65.90 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHH
Q 004006 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAAD 386 (779)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 386 (779)
++++|+..|++..+.| +.... |...|...+.+++|++.|++..+.| +...+..|..+|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 22233 5555555566666666666666654 55666666666665 56666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEG 431 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 431 (779)
.+|++..+.+ +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666553 45556666666665 566666666666665554
No 404
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=1.6e-05 Score=80.60 Aligned_cols=148 Identities=11% Similarity=-0.062 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
..+..+...+.+.|++++|+..|++.++.. ++... +...|+++++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 446667778889999999999999988752 33321 233445555543331 24788999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHHcCCHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL-YTKIGKVSKA 490 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~~A 490 (779)
.+.|++++|+..|++.++.+ +.+..+|..+..+|...|++++|+..|++.++.... +...+..+..+ ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 557889999999999999999999999998765322 45556666555 3445678888
Q ss_pred HHHHHHHHHC
Q 004006 491 LEVSKVMKSS 500 (779)
Q Consensus 491 ~~~~~~m~~~ 500 (779)
..+|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899888765
No 405
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.00016 Score=62.15 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHH
Q 004006 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERA 420 (779)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 420 (779)
+++++|++.|++..+.| +.... |...|...+.+++|+++|++..+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46677777777777766 22233 6666666677777777777777763 56677777777766 6777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004006 421 EALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECG 466 (779)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g 466 (779)
.+.|++..+.| +...+..|..+|.. .++.++|+++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777654 45566666666666 666777777776666654
No 406
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=2.6e-05 Score=63.96 Aligned_cols=94 Identities=15% Similarity=0.028 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 004006 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-------VHT 753 (779)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~~~ 753 (779)
...+..+...+...|++++|...+++..+.. +.+...|..++.+|.+.|++++|++.++++++. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4456667777777777777777777776654 456677777777777777777777777777763 344 455
Q ss_pred HHHHHHHHHhcCCcchHHHhHhhh
Q 004006 754 YTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 754 ~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+..+..++...|+.++|.+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 666777777777777777666554
No 407
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.84 E-value=4.6e-05 Score=65.64 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 004006 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR----------MQSALAVTKEMSAQKIPRNTFVYNILIDGWARR- 729 (779)
Q Consensus 661 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 729 (779)
.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|++.++.+ +.+...|..++.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 3444444444444443 2344444444444444433 235666666655554 44455556666666554
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004006 730 ----------GDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761 (779)
Q Consensus 730 ----------g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~ 761 (779)
|++++|++.|+++++ +.|+...|...+..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 366667777666666 456655555555443
No 408
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=5e-05 Score=58.62 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=63.2
Q ss_pred ceEEeccCCCcC-Ch----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 152 GKIFVGNLPNWI-KK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 152 ~~~~v~~l~~~~-~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.+|+|.||+.++ +. +.++.+|.+|+.+......++ -.-..|.|.+.++|.+|...| +|..++|+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~L--h~~~f~g~~~ 76 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRL--HKTEFLGKEM 76 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTS--TTSEETTEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHh--ccceecCcee
Confidence 489999998876 43 356899999999998888876 456789999999999999999 9999999999
Q ss_pred EEEecCC
Q 004006 227 TVKLDDG 233 (779)
Q Consensus 227 ~v~~~~~ 233 (779)
+|-++.+
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999864
No 409
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=0.0001 Score=63.43 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=67.7
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHCCCCCC
Q 004006 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDM----------HRARQTFENMRARGIEPT 330 (779)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~~~ 330 (779)
..++.|+..|.++++.+|. +...|..+..++.+.|++ ++|+..|++.++.+.. +
T Consensus 16 ~~feeA~~~~~~Ai~l~P~---------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL---------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-K 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred hHHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-c
Confidence 4459999999999999997 677777788888887765 4888888888877533 5
Q ss_pred HhhHHHHHHHHHccC-----------ChHHHHHHHHHHHHcCCCCCHhHH
Q 004006 331 LHVYTNLIHAYAVGR-----------DMEEALSCVRKMKEEGIEMSLVTY 369 (779)
Q Consensus 331 ~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~ 369 (779)
..+|..+..+|...| ++++|++.|++.++. .|+...|
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 667778888887664 677777777777774 3444444
No 410
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00012 Score=60.55 Aligned_cols=81 Identities=7% Similarity=-0.099 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.|...|.+++..+|. +...|..+...|...|++++|+..|+++++... .+...|..+..+|..
T Consensus 2 ~~a~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQGTD---------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTTTCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHH
Confidence 3577788888888876 566677888888889999999999988887743 356778888888888
Q ss_pred cCChHHHHHHHHHHHHc
Q 004006 344 GRDMEEALSCVRKMKEE 360 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~ 360 (779)
.|++++|...|++.++.
T Consensus 66 ~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 66 QGDRAGARQAWESGLAA 82 (115)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888887763
No 411
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=2.5e-05 Score=64.09 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=30.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
.|..+...+...|++++|++.|++.++... .+...|..+..+|.+.|++++|+..|+++.+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444445555555555555555544321 23444555555555555555555555555544
No 412
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00018 Score=76.08 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=70.6
Q ss_pred HHHHcCChHHHHHHHHHHHHC-----CC-CC-CHhhHHHHHHHHHccCChHHHHHHHHHHHH-----cCC-CCC-HhHHH
Q 004006 305 YYARRGDMHRARQTFENMRAR-----GI-EP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKE-----EGI-EMS-LVTYS 370 (779)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~-~~~~~ 370 (779)
.+..+|++++|+.++++.++. |. .| ...+++.|..+|...|++++|+.++++.++ .|. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455677788887777776652 11 11 124677777777777777777777776654 121 122 44566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc-----CCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKER-----HAT--LNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
.|+..|...|++++|+.+|+++.+. |.. ....+...+..++...+.+++|+.+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666542 111 0122333444444455555555555554443
No 413
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=0.00018 Score=59.39 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 350 ALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 350 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
|++.|++.++... .+...+..+...|...|++++|+..|+++.+.... +...|..++.+|...|++++|+..|++..+
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444321 23444444444444555555555555544444322 344444444555555555555555444443
No 414
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00019 Score=75.91 Aligned_cols=126 Identities=6% Similarity=-0.029 Sum_probs=79.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHH
Q 004006 620 GLVEKRQMEKAIEILDEMTLAG---ISP----NEHTYTTIMHGYASLGDTGKAFEYFTKLRNE-----GL-EL-DVFTYE 685 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 685 (779)
.+...|++++|+.++++.++.. +-+ ...+++.|..+|...|++++|..++++.++. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445677777777776655321 111 1346777777777777777777777776542 21 11 244577
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 686 ALLKACCKSGRMQSALAVTKEMSA-----QK--IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
.|...|...|++++|+.++++..+ .| .+....+.+.|..++...+++++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887777653 23 1111234466667777778888888888887653
No 415
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00047 Score=53.75 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
.+..+...|.+.|++++|+..|+++.+.... +..++..++.+|.+.|++++|++.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444444444444444444444443222 333444444444444444444444444443
No 416
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.61 E-value=0.00052 Score=53.50 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=35.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.+..+...+...|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..|+++.+..+. +..++..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34444444444455555555555444432 113444555555555555555555555555544322 334444444443
No 417
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.48 E-value=0.17 Score=56.73 Aligned_cols=272 Identities=13% Similarity=0.084 Sum_probs=142.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 004006 481 YTKIGKVSKALEVSKVMKSSGIKHNM--KTYSMLINGFLKLKDWANVFAVFEDVMRDGL--K-----PDVVLYNNIIRAF 551 (779)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~-----~~~~~~~~l~~~~ 551 (779)
....|+.++++.++......+...+. ..-..+.-+....|..++++.++...+...- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566777776666554431101122 2333344445566665677777776654311 0 0111122222233
Q ss_pred HhCCC-HHHHHHHHHHHHHcCCCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCC
Q 004006 552 CGMGN-MDRAIHIVKEMQKERHRPTSRTFM--PIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNAL--ILGLVEKRQ 626 (779)
Q Consensus 552 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~ 626 (779)
.-.|. -+++...+..+...... ...... .|...+...|+-+....++..+.+.. +..+...+ .-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33343 34566666666553211 111112 23333556788888888888776642 33333333 334556788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004006 627 MEKAIEILDEMTLAGISPNEHTYT---TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAV 703 (779)
Q Consensus 627 ~~~A~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (779)
.+.+..+++.+.... .|. .-|. .+..+|+..|+......++..+.+.. ..++...-.+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888777532 222 2232 34456777888777777888887642 22333333333344456776667777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 704 TKEMSAQKIPRNTFVYNILIDGWARRGDV-WEAADLMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
++.+.+.+ .+.+..-..+.-+..-.|.. .+++.++..+.. .+|..+-...+-+...
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 76665543 34444334444444445543 578888888874 3455544444444444
No 418
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.41 E-value=0.00065 Score=54.30 Aligned_cols=64 Identities=19% Similarity=0.012 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
+...+..+..+|.+.|++++|+..|+++.+.++. +..+|..++.+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555666666666666666666666555433 445556666666666666666666655544
No 419
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.0011 Score=52.94 Aligned_cols=63 Identities=27% Similarity=0.193 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
+...+..+..+|...|++++|+..|+++.+.+ +.+...|..++.+|.+.|++++|++.+++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444445555555555555555444433 3334444445555555555555555554444
No 420
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.11 E-value=0.035 Score=52.69 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHH
Q 004006 382 AEAADHWFEEAKERHATL-NAIIYGNIIYAQCQT-----RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEEK 454 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 454 (779)
...|...++++.+.+... +...|..++..|.+. |+.++|.+.|++.++.+-..+..++..+.+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 566777777777764331 345777777777774 78888888888888765323466777777777663 77888
Q ss_pred HHHHHHHHHHCCCC
Q 004006 455 CLIVFERLKECGFS 468 (779)
Q Consensus 455 a~~~~~~~~~~g~~ 468 (779)
+.+.+++.+.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888887776544
No 421
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.95 E-value=0.044 Score=62.90 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=87.3
Q ss_pred HHHHcCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 305 YYARRGDMHRARQ-TFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 305 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
.....|++++|.+ ++..+ . +......++..+.+.|..++|+++.+.- ..-+......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345777877766 44211 1 1223367777777888888887665321 11233455678888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
+|.++.+.+ .+...|..++..+.+.++++.|+++|.++.. |..+...|...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887775433 2567788888888888888888888877643 4455555555666665544444443
Q ss_pred HCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004006 464 ECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (779)
Q Consensus 464 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (779)
..| -++....+|.+.|++++|++++
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 332 1223333444455555555444
No 422
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.94 E-value=0.0037 Score=62.00 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=30.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+..+|..+...+...|++++|...+++++..+ ++...|..+...+.-.|++++|++.|+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33344444433444455555555555555443 34444444444555555555555555555444
No 423
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.93 E-value=0.0032 Score=47.64 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=44.4
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
.+++ +.|.+..-.||.++|+.||.|. |+.+-| --|||.|.+++.|..|+..+
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD--------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD--------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET--------TEEEEECSCHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC--------CeEEEEecCHHHHHHHHHhc
Confidence 4555 9999999999999999999654 677766 48999999999999998865
No 424
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.88 E-value=0.02 Score=56.84 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004006 678 ELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTS 756 (779)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 756 (779)
+.+..+|..+...+...|++++|...++++...+ ++...|..+.+.+...|++++|.+.++++.+ +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 5678888888777777889999999999888876 6777788888888889999999999988887 4667666543
No 425
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0056 Score=47.03 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=56.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhc-----cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQ-----FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
+.+|.|.|||..+.++.|+-.|++ -|.|.+++.. .+-|+|+|.+.+.+++.++. ..+.|+|.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~---------~~~AvItF~d~~va~rVL~k---~~H~L~~~~ 75 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL---------GCGGVLTFREPADAERVLAQ---ADHELHGAQ 75 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE---------TTEEEEEESSHHHHHHHHTC---SCCBSSSSB
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc---------CCcEEEEEcChHHHHHHhcC---CcceecCeE
Confidence 359999999999999999999976 2578887664 25789999999999988863 388899999
Q ss_pred EEEEec
Q 004006 226 LTVKLD 231 (779)
Q Consensus 226 ~~v~~~ 231 (779)
|.|.-.
T Consensus 76 LsV~P~ 81 (104)
T 2dhx_A 76 LSLRPA 81 (104)
T ss_dssp CEEEEC
T ss_pred EEEEcC
Confidence 988643
No 426
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.14 Score=44.60 Aligned_cols=98 Identities=11% Similarity=0.173 Sum_probs=47.5
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (779)
...|+++.|.++.+.+ -+...|..|.....+.|+++-|+++|.++.. +..+...|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455666665554443 1455566666666666666666665555432 233333444455554444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004006 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFE 460 (779)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (779)
++-+.....|. ++.....+...|+++++.++|.
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 44433333321 3333344445555555555543
No 427
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.65 E-value=0.13 Score=48.84 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCh
Q 004006 347 MEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKM-----GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RNM 417 (779)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 417 (779)
...|..++++.++.. |+ -..|..|+..|.+. |+.++|.+.|++.++..+.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 457777788888753 44 56888999999884 99999999999999987654688888888888884 999
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHHH
Q 004006 418 ERAEALVRDMEEEGID--APIDIYHM 441 (779)
Q Consensus 418 ~~A~~~~~~~~~~~~~--~~~~~~~~ 441 (779)
+++.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999987644 54444443
No 428
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.64 E-value=0.0035 Score=65.01 Aligned_cols=86 Identities=6% Similarity=-0.022 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CC--CCCCHHHHHHHHH
Q 004006 659 LGDTGKAFEYFTKLRNE-----GL-EL-DVFTYEALLKACCKSGRMQSALAVTKEMSA-----QK--IPRNTFVYNILID 724 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~~l~~ 724 (779)
.|++++|+.++++.++. |. .| -..+++.|..+|...|++++|+.+++++.+ .| .+....+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555666555555432 10 01 133566666666666666666666666542 12 1112235677777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004006 725 GWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~ 744 (779)
+|...|++++|+.++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777777654
No 429
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.60 E-value=0.15 Score=41.38 Aligned_cols=141 Identities=15% Similarity=0.143 Sum_probs=98.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 665 (779)
+.-.|..++..++..+..+. -+..-||.+|.-....-+-+-..++++..-.. -|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 34467788888888877764 25666777776666666666656665554321 111 235566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
...+-.+- -+....+..++.+...|+.+.-.+++..+... .+++....-.+..+|.+.|+..+|.+++.++.++
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 65554441 23445667788888999999999999886543 3788999999999999999999999999999998
Q ss_pred CCC
Q 004006 746 GVQ 748 (779)
Q Consensus 746 g~~ 748 (779)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 875
No 430
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.54 E-value=0.018 Score=45.40 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=23.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 304 NYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
..+.+.|++++|+..|+++.+... .+.. .+..+..+|...|++++|++.|++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444444444444321 1223 444444444444444444444444444
No 431
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.54 E-value=0.016 Score=45.73 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
..+.+.|++++|+..|++.++... .+.. .|..+..+|...|++++|+..|+++.+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334444555555555555554321 1334 4555555555555555555555555544
No 432
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.53 E-value=0.0084 Score=62.28 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=58.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CC--CCCCHHHHH
Q 004006 655 GYASLGDTGKAFEYFTKLRNEG---LEL----DVFTYEALLKACCKSGRMQSALAVTKEMSA-----QK--IPRNTFVYN 720 (779)
Q Consensus 655 ~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~ 720 (779)
.+.+.|++++|+.++++.++.. +.+ -..+++.|+.+|...|++++|+.+++++.+ .| .+....+|+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777776431 111 134677777778788888888877776653 12 111234577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 721 ILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.|+.+|...|++++|+.+++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888888887664
No 433
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.50 E-value=0.044 Score=62.89 Aligned_cols=172 Identities=14% Similarity=0.173 Sum_probs=117.7
Q ss_pred HHHHhCCCHHHHHH-HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 549 RAFCGMGNMDRAIH-IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (779)
Q Consensus 549 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 627 (779)
......+++++|.+ ++..+. +......++..+.+.|..++|+++.+.... - .......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCH
Confidence 44456889999877 552211 022337777888889999998876632211 1 2335678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 628 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
++|+++.+.+ .+...|..|...+.+.++++.|.++|.++.+ |..+...|...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886532 4678999999999999999999999998753 345666677788888877777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcc
Q 004006 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQ 768 (779)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~ 768 (779)
...+ -++.-..+|.+.|++++|++++.++.+ |...+......|..+
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~~---------~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQR---------FSEAAFLGSTYGLGD 779 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCCH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHcCC---------hHHHHHHHHHhCCCh
Confidence 6654 134445567788999999999877643 333444444555444
No 434
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.42 E-value=0.0076 Score=62.52 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=56.9
Q ss_pred HcCChHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHH-----cCC-CCC-HhHHHHHH
Q 004006 308 RRGDMHRARQTFENMRAR---GIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKE-----EGI-EMS-LVTYSIIV 373 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~-~~~~~~l~ 373 (779)
..|++++|+.++++.++. -+.++ ..+++.|..+|...|++++|+.++++.++ .|. .|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888877652 11111 24677788888888888888888877654 221 122 34567777
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~ 394 (779)
..|...|++++|+.+|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777777777777777776654
No 435
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.39 E-value=3.8e-07 Score=91.26 Aligned_cols=264 Identities=8% Similarity=0.100 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
+..|..|..++.+.|+..+|++.|-+. -|...|..+|.+..+.|.+++-...+.-.++. . .+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~-ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A-RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C-CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h-cccccHHHHHHH
Confidence 345666666666666666666554322 14555666666666666666666555333332 2 244444556666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
|++.++..+-++++. .+|..-...++.-|...|.++.|.-+|..+.. |..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 666666544333221 24555555566666666666665555443321 23344445555655554
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
.+.-.+ .-+..||-.+-.+|...+.+..|.-.--.++-.. .-...++..|...|.+++.+.+++.-...
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 433221 1267788888888998888887765544443221 11234667788889999999998886632
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCC------CCcccHHHHHHHHHhcCCHHHHH
Q 004006 536 GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE-RHR------PTSRTFMPIIHGFARAGEMKRAL 596 (779)
Q Consensus 536 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 596 (779)
.......|+-|.-.|++- +.++..+.++..-+. ++. -....|.-++-.|.+-.++|.|.
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 223567777777777765 455555444432221 110 12344666666666666666554
No 436
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.37 E-value=0.014 Score=60.67 Aligned_cols=93 Identities=13% Similarity=-0.051 Sum_probs=64.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC---CCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHc-----C-CCCC-Hh
Q 004006 302 MVNYYARRGDMHRARQTFENMRARG---IEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE-----G-IEMS-LV 367 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~-~~ 367 (779)
.+..+.+.|++++|+.++++.++.. +.++ ..+++.+..+|...|++++|+.++++.++. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667888899999888887531 1111 246788888888888888888888877642 2 1122 44
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
+++.|...|...|++++|+.+|+++.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 577777777788888887777777654
No 437
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.17 Score=44.07 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=66.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
+....+.|+++.|.++.+.+ -+...|..|.......|+++-|+++|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34445678888887776655 1567788888888888888888888777643 44566666777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
++..++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66555544444332 244455556667777777777643
No 438
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.34 E-value=0.013 Score=46.77 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=55.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec-eEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG-RVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~-~~~~v~ 229 (779)
.+-|-|-+.|... -..+.+.|++||.|.+...... ..+-.|.|.+..+|++|+.. ||..++| -.|-|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-------~NWihI~Y~s~~~A~rAL~k---NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-------GNWMHIRYQSKLQARKALSK---DGRIFGESIMIGVK 92 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-------SSEEEEEESSHHHHHHHHTT---TTCEETTTEECEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-------CCeEEEEeCCHHHHHHHHHh---CCeEecCCEEEEEE
Confidence 3478888888874 5677889999999998776322 57999999999999999965 9999985 555555
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
.-.
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 433
No 439
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.34 E-value=6.8e-06 Score=82.46 Aligned_cols=176 Identities=13% Similarity=0.081 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
-|+..|..+|.+..+.|++++-+..+....+. ..+...=+.|+-+|++.+++.+-.+++ -.+|..-...++
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHH
Confidence 35566788899999999999999988877765 335566679999999999887754443 135666667788
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC--------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH--------------------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID 433 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 433 (779)
+-|...|.++.|.-+|..+..-. -..+..+|..+-.+|...+.+.-|.-+--.++-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 88888888888877766542210 0124455666666666666655554443333211
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 004006 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI 484 (779)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 484 (779)
..-+..++..|...|.+++.+.+++.-... -+.....|+-|.-.|++-
T Consensus 229 --adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 229 --ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 111223445556666666666665554421 122455566666555554
No 440
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.32 E-value=0.029 Score=47.61 Aligned_cols=82 Identities=12% Similarity=-0.009 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC---CHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHH
Q 004006 348 EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG---NAEAADHWFEEAKERH-ATLNAIIYGNIIYAQCQTRNMERAEAL 423 (779)
Q Consensus 348 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (779)
..+.+.|.+..+.|. ++..+...+..++++.+ ++++++.+|+.+.+.+ +..+...++.|..+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344455555555443 46666666666666666 4556666666666653 112345566666666666666666666
Q ss_pred HHHHHHc
Q 004006 424 VRDMEEE 430 (779)
Q Consensus 424 ~~~~~~~ 430 (779)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666664
No 441
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.28 E-value=0.031 Score=43.43 Aligned_cols=66 Identities=9% Similarity=0.001 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 679 LDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
.+...+..+..++...++ .++|..++++....+ +.+...+..++..+.+.|++++|+.+|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455566666666654443 567777777776655 556666666777777777777777777777653
No 442
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.23 E-value=0.031 Score=42.54 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=57.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCC-cceEEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
.+|.|.+||+..|++++.+.++..+.+.....+..+...+.+ -+-|+|.|.+.+++..-.+.+ +|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~--~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF--DGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH--TTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh--CCcEEE
Confidence 378999999999999999999999888777777762222322 478999999999999999999 999983
No 443
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.039 Score=46.88 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 004006 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSG---RMQSALAVTKEMSAQKIPR--NTFVYNILIDGWARRGDVWEAAD 737 (779)
Q Consensus 663 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 737 (779)
..+.+.|.+..+.+ .++..+.-.+..++++++ +++++..+|++..+.+ .| +...+-.|.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444444444444 245555555555555555 4445555555555432 12 23344445555566666666666
Q ss_pred HHHHHHHcCCCCC
Q 004006 738 LMQQMKQEGVQPD 750 (779)
Q Consensus 738 ~~~~m~~~g~~pd 750 (779)
+++.+++ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 6666655 3454
No 444
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.16 E-value=0.04 Score=44.00 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=34.1
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERH------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
+..-+..|+..+.+.|+++.|+.+|+.+.+.. ......++..|+.+|.+.|++++|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445555555556666666666665555431 1113344555555555555555555555555543
No 445
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.01 E-value=0.059 Score=41.80 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=30.0
Q ss_pred CHhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 365 SLVTYSIIVGGFAKMGN---AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
|...+..+..++...++ .++|..+|++++..++. +..+...++..+.+.|++++|++.|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433222 34555555555544333 4444444444555555555555555554443
No 446
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.90 E-value=2.8 Score=46.26 Aligned_cols=128 Identities=8% Similarity=0.018 Sum_probs=79.3
Q ss_pred HHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHc------CC-CCChh--
Q 004006 334 YTNLIHAYAVGRD-MEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEAKER------HA-TLNAI-- 402 (779)
Q Consensus 334 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~-~~~~~-- 402 (779)
-..+++.+...++ ++.|.++|+++.+....-+......++..+.+.+ +--+|.+++.+..+. .. ..+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 4455555555666 5789999999988642212222233333333333 233566766665531 11 11111
Q ss_pred --------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 403 --------IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 403 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
....-+..+...|+++.|+++-++....- +.+..+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111333556889999999998888863 566888999999999999999999888776
No 447
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.80 E-value=0.62 Score=37.97 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=63.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
-.|..++..++..+..... +..-||++|--....-+-+-..++++.+-+. + |. ..+|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHHH
Confidence 4455666666666665532 4455555554444444444444444433221 1 11 12333333333
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
.|-++-. +.......+......|+.++-.+++.++... ..++......+..+|.+.|+..++.+++.+.-+.|+
T Consensus 83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3333211 2233333344445555555555555554331 244455555555555555555555555555555543
No 448
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.69 E-value=3.7 Score=46.18 Aligned_cols=222 Identities=12% Similarity=0.022 Sum_probs=101.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHH
Q 004006 551 FCGMGNMDRAIHIVKEMQKERHRPTS--RTFMPIIHGFARAGEMKRALEIFDMMRRSGC-------IPTVHTFNALILGL 621 (779)
Q Consensus 551 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~~~ 621 (779)
....|+.++++.++......+...+. ..=..+.-+....|..+++..++.......- .+....-.+|.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566666666666554432100111 1122233344555655566766666554211 01111222232333
Q ss_pred HhcCC-HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 004006 622 VEKRQ-MEKAIEILDEMTLAGISPNEHTYT--TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (779)
Q Consensus 622 ~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (779)
+-.|. -+++.+.+..++...- ....... .|...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+-+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 33332 2456666666654321 1111122 22233445566666666666666532 222222333333444667777
Q ss_pred HHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 699 SALAVTKEMSAQKIPRNTFVY--NILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
.+..+++.+.... .|....- .+++-+|+..|+.....+++..+... ...+..-...+.-++...|+.+.+.++++.
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 7777777776532 1222211 23444566677766666677777653 121222222222233345666655555543
No 449
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.56 E-value=0.11 Score=41.32 Aligned_cols=66 Identities=15% Similarity=0.032 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARG------IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
+...+..|...+.+.|++..|+..|+.+.+.- -.....++..+..+|.+.|++++|+..+++.++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455667777777888888888777766531 0123445666666666666666666666666654
No 450
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.25 E-value=0.031 Score=42.48 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=44.4
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
.++| +.|.+..-.||.++|+.||.| .|+.+-| .-|||.|.+++.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--------TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--------TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--------TEEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--------CeEEEEecCHHHHHHHHHhc
Confidence 4455 999999999999999999954 4777766 48999999999999999876
No 451
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.08 E-value=0.014 Score=59.76 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=42.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 213 (779)
.++|||. .+..+++.+|.+.|++||.|.++.+-.+ + .-|+.|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C-----CeEEEEEeCCHHHHHHHHhc
Confidence 3599998 7999999999999999999999988766 1 25999999999999977643
No 452
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.97 E-value=0.025 Score=45.80 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=53.2
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeE-EEEecC-----------CCCCC-CCcceEEEEeCCHHHHHHHHHHhhhCCc
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKG-----------YNNFE-KNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~-----------~~~~~-~~~g~~fv~f~~~~~a~~a~~~~~~~g~ 219 (779)
.|.|-+.|.. ....+.+.|++||.|.+ ..+.++ ++..+ ...+.-.|.|++..+|.+|+.. ||.
T Consensus 9 ~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~---NG~ 84 (132)
T 3p3d_A 9 AILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE---NGA 84 (132)
T ss_dssp EEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT---TTC
T ss_pred EEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh---CCe
Confidence 5666677666 45667778999999875 322211 00011 1256779999999999999865 999
Q ss_pred eeeceEEEEEecCCc
Q 004006 220 EFHGRVLTVKLDDGR 234 (779)
Q Consensus 220 ~~~~~~~~v~~~~~~ 234 (779)
.|+|..|-|..-.+.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999987777665433
No 453
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.73 E-value=0.2 Score=40.86 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHH
Q 004006 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS---ALAVTKEMSAQKIP-RNTFVYNILIDGWARRGDVWE 734 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 734 (779)
......+.+.|.+....|. ++..+--.+.+++.+..+..+ ++.+++++.+.+-+ ......-.|.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344555666666655553 566666677777877776444 77777777665311 133345566777888888888
Q ss_pred HHHHHHHHHHcCCCCC
Q 004006 735 AADLMQQMKQEGVQPD 750 (779)
Q Consensus 735 A~~~~~~m~~~g~~pd 750 (779)
|.++++.+++ +.|+
T Consensus 93 A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHH--hCCC
Confidence 8888888887 4664
No 454
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.36 E-value=0.72 Score=38.57 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=33.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS 468 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 468 (779)
.++.++|.++|+.+.... +.-..+|.+....-.+.|+..+|.+++.+.+..+.+
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 366777777777776542 222455555555556677777777777776666544
No 455
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.13 E-value=0.032 Score=48.71 Aligned_cols=35 Identities=14% Similarity=-0.071 Sum_probs=28.4
Q ss_pred EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc
Q 004006 180 NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (779)
Q Consensus 180 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~ 219 (779)
.++|+.+ .++++|||||+|.+.++|++|++.+ ++.
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~--~~~ 36 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQY--AND 36 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHH--HHH
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhh--ccc
Confidence 4567766 2368999999999999999999887 653
No 456
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.98 E-value=0.24 Score=40.30 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH---HHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA---ADHWFEEAKERH-ATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
+..+.+.|.+....|. ++..+-..+..++++..+..+ ++.+++.+...+ +.......+.|..++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444444433 455555555666666555444 555555555442 11233445555555666666666666
Q ss_pred HHHHHHHc
Q 004006 423 LVRDMEEE 430 (779)
Q Consensus 423 ~~~~~~~~ 430 (779)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 457
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.80 E-value=1.1 Score=37.56 Aligned_cols=102 Identities=8% Similarity=0.062 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHh-hHHHHHHH------HHccCChHHHHHHHHHHHHcC
Q 004006 295 SRREFGLMVNYYARRGDM------HRARQTFENMRARGIEPTLH-VYTNLIHA------YAVGRDMEEALSCVRKMKEEG 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~m~~~g 361 (779)
|..+|-..+...-+.|+. ++.+++|+++... +.|+.. .|...|.. +...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555766 6777788877764 344321 11111111 122356666666666665542
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
-.. ...|......-.+.|++..|.+++.+.+..+..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 122 555555555555666666666666666655433
No 458
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.29 Score=53.86 Aligned_cols=130 Identities=9% Similarity=0.015 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-hHHHHHHHHHHHHc------CCC-CC---
Q 004006 298 EFGLMVNYYARRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD-MEEALSCVRKMKEE------GIE-MS--- 365 (779)
Q Consensus 298 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~-~~--- 365 (779)
.-..|+..+...|+ ++.|+.+|+++.+.....+......+|..+.+.++ --+|..++.+.++. ... .+
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34556677766676 47899999999887432222223334444433332 22455555544321 111 11
Q ss_pred -------HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004006 366 -------LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (779)
Q Consensus 366 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (779)
.......+..+...|+++-|+++-+++...-+. +..+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 123444456677889999999999999987444 78999999999999999999999988773
No 459
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.80 E-value=0.19 Score=38.44 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=51.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCC-cceEEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
+|.|..||+..|++++.+.++..-.+.....+..+...+.+ -+.|+|.|.+.++...-.+.. +|+.+-
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f--~g~~F~ 79 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF--DGYIFL 79 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS--TTEEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc--CCcEEE
Confidence 89999999999999998888776555444444442222333 367899999999999999988 999883
No 460
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.72 E-value=14 Score=38.26 Aligned_cols=93 Identities=9% Similarity=0.081 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRS--GCIPT---VHTFNALILGLVEKRQMEKAIEILDEMTL----AGISPN--EHTY 649 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~~~--~~~~ 649 (779)
.|...|...|++.+|.+++..+... +.... ...+..-+..|...+++..|..+++++.. ....++ ...|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3445555666666666666555421 11100 22344445556666666666666655431 111111 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 650 TTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 650 ~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
...+..+...+++.+|...|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555556666666666665554
No 461
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.59 E-value=13 Score=38.42 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--HHH
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKEC--GFSPS---IISYGCLINLYTKIGKVSKALEVSKVMKS----SGIKHN--MKT 508 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~--~~~ 508 (779)
..|...|...|++.+|..++..+... |.... ...+..-+..|...+++.+|..+++++.. ....++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44566677777777777777766532 11111 23444556667777777777777766532 111111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 509 YSMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
+..++..+...++|.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455556666677777666665543
No 462
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.90 E-value=14 Score=37.06 Aligned_cols=222 Identities=10% Similarity=0.028 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCcccHH---
Q 004006 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPD-----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKER--HRPTSRTFM--- 580 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~--- 580 (779)
.++..|...|++.+|..++.++.+.=-..| ..++..-+..|...+++.++..++....... +.++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 355666666666666666666554210101 2334455566677777777777666654331 111111111
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 004006 581 -PIIHGFA-RAGEMKRALEIFDMMRRSGCIPT------VHTFNALILGLVEKRQMEKAIEILD-EMTLAGISPNEHTYTT 651 (779)
Q Consensus 581 -~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~~~~~~~~~ 651 (779)
.-...+. ..++|..|...|-+..+.--..+ ...|..| .+... ++..+.-.++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 1112234 56777777766655532100111 1122222 22222 22112112221 1111112344555566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
++.+| ..+++.+...+++.... .+..|......+-..+.+ --...+.++.+ +-...++..|...+.- .
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~---pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT-----MLEQNLCRIIE---PYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH-----HHHHHHHHHHT---TCSEEEHHHHHHHHTC--C
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH-----HHHHHHHHHhH---hhceeeHHHHHHHHCc--C
Confidence 66654 44667666666655433 234455432211111100 00111122222 2233445555555433 6
Q ss_pred HHHHHHHHHHHHHcC
Q 004006 732 VWEAADLMQQMKQEG 746 (779)
Q Consensus 732 ~~~A~~~~~~m~~~g 746 (779)
.+++...+-+|+..|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 788888888888764
No 463
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.77 E-value=5.1 Score=33.21 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 678 ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (779)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (779)
.++..+--.+.+++.++.+ ..++..+++++...+-.......-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3455555556666666554 345666666665533112233445556667777777777777777766 4554
No 464
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.64 E-value=1.1 Score=45.75 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 004006 684 YEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTY 754 (779)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~ 754 (779)
...++.++...|+.+++...+..+.... +-+...|..+|.+|.+.|+..+|++.|+++.+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666667777777777777666554 55666777777777777777777777776543 3777766543
No 465
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.52 E-value=2.6 Score=49.96 Aligned_cols=195 Identities=12% Similarity=0.087 Sum_probs=120.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----------------
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH---------------- 396 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------- 396 (779)
....++..+.+.+.++-+.++...+ +.+......++.+|...|++++|..+|.++...-
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc
Confidence 3445666677778887776654333 2355555677788888888888888887652210
Q ss_pred ------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 397 ------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI----DIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 397 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
...-...|..++..+.+.+.++.++++-...++.....+. ..|..+.+.+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 0001234667778888889998888887777664322222 257778888899999999998888887654
Q ss_pred CCCCHhhHHHHHHHHHHcCCHH------------HHHHHHHHHH-HC-CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 004006 467 FSPSIISYGCLINLYTKIGKVS------------KALEVSKVMK-SS-GIKHNMKTYSMLINGFLKLKDWANV-FAVFED 531 (779)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~------------~A~~~~~~m~-~~-~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~ 531 (779)
.+ ......|+..++..|+.+ +..+++..-. .. .+......|..|-.-+...|++.+| .-+|+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 33 445666666666655544 4444443322 11 1122224455555556667777655 445565
Q ss_pred HHH
Q 004006 532 VMR 534 (779)
Q Consensus 532 ~~~ 534 (779)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 466
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.35 E-value=13 Score=35.81 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=15.2
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004006 725 GWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~ 744 (779)
-|.-.|+...|..+++...+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 45567889999999887653
No 467
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.32 E-value=1.2 Score=38.16 Aligned_cols=115 Identities=9% Similarity=0.003 Sum_probs=64.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-------hhHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHhHHHH
Q 004006 302 MVNYYARRGDMHRARQTFENMRARG-IEPTL-------HVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IEMSLVTYSI 371 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ 371 (779)
-+..+...|.|+.|+-+.+.+.... ..++. .++..+..++...++|..|...|++.+... +.-...++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4677788899999988888865531 12232 256777788889999999999998865421 1111111111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
+. . ...... ......+...-+.+..+|.+.+++++|+.+++.+..
T Consensus 106 ~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10 0 000000 001122445556677778888888888887776543
No 468
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.20 E-value=2.7 Score=34.39 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 678 ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (779)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (779)
.++..+--.+.+++.++.+ ..+++.+++++.+.+-......+-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 4566666666677777664 345677777766544112344556667777778888888888777776 4565
No 469
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.12 E-value=5.9 Score=46.88 Aligned_cols=186 Identities=10% Similarity=0.086 Sum_probs=112.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA-------------------- 640 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------------------- 640 (779)
.++..+.+.+.++.+.++.... .-+...--.+..+|...|++++|..+|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555566666666655543322 124444344556677788888888887653210
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 004006 641 G--ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV----FTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (779)
Q Consensus 641 ~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (779)
. ...-..-|..++..+.+.+.++.+.++-+..++..-..+. ..|..+.+++...|++++|...+-.+.+.. -
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 0 0111234677888888889999999888887765323232 257888899999999999999998887654 3
Q ss_pred CHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCcchHHHh
Q 004006 715 NTFVYNILIDGWARRGDV------------WEAADLMQQMKQEG--VQPDVHTYTSFINACKCSKSNQRNGRS 773 (779)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~------------~~A~~~~~~m~~~g--~~pd~~~~~~l~~a~~~~g~~~~a~~~ 773 (779)
-...+..|+..++..|.. ++..+++....+.. .......|..|-.-+...|++.+|.++
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 456677777777765544 44444443322211 111112355555556667787766654
No 470
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=89.66 E-value=0.13 Score=44.21 Aligned_cols=42 Identities=12% Similarity=-0.042 Sum_probs=36.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCCc
Q 004006 191 EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (779)
Q Consensus 191 ~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~~ 234 (779)
.+.+|+++|+|.+.++|++|++.+ .||..++| .+.+.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~-~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQY-ANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHH-HHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHH-hcCCCCCC-ceecccccCc
Confidence 456999999999999999999865 27899999 9999988654
No 471
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.30 E-value=19 Score=36.12 Aligned_cols=168 Identities=11% Similarity=0.112 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcc-----cHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHH---
Q 004006 546 NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSR-----TFMPIIHGFARAGEMKRALEIFDMMRRS--GCIPTVHTFN--- 615 (779)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 615 (779)
.++..|...|++.+|.+++..+.+.=...|.. .+...+..|...+++.++...+...... .+.++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 67889999999999999999887742222322 2445566788899999999999877643 1112332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHH
Q 004006 616 -ALILGLV-EKRQMEKAIEILDEMTLAGISPN------EHTYTTIMHGYASLGDTGKAFEYFT-KLRNEGLELDVFTYEA 686 (779)
Q Consensus 616 -~li~~~~-~~~~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ 686 (779)
.-...+. ..++|..|...|-+..+.-.... ...|..|.. .. .++..+...++. +....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 1123455 68899999888776542110111 122322222 22 233222222222 2111112345555666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTF 717 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (779)
|+.+| ..+++.+...+++.... .+..|..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 66655 56778777777776533 2344554
No 472
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.81 E-value=5 Score=30.77 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
.-+..+-++.+....+.|+..+..+.+++|-+.+++.-|.++|+-++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555555555554443
No 473
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.43 E-value=7.9 Score=31.64 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=33.7
Q ss_pred CCHhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 364 MSLVTYSIIVGGFAKMGN---AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++..+-.....++++..+ ..+++.+++.+.+.+.......++.|..++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444555555555555443 2345555555554433223444555555555555555555555555543
No 474
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.40 E-value=1.7 Score=33.28 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=57.2
Q ss_pred HHHHHHHHHH-cC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 684 YEALLKACCK-SG-RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINA 760 (779)
Q Consensus 684 ~~~l~~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a 760 (779)
|..--..|.. .. +.-+..+-++.+...++.|+..+....+++|.|.+++.-|+.+|+.++.+ ......+|..++.-
T Consensus 11 F~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 11 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 3333334443 33 45678888888888899999999999999999999999999999998876 33345567777654
No 475
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.58 E-value=5.4 Score=34.11 Aligned_cols=24 Identities=4% Similarity=-0.164 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 004006 404 YGNIIYAQCQTRNMERAEALVRDM 427 (779)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~ 427 (779)
+..++.++...+++.+|...|++.
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 344444455555555555555544
No 476
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.56 E-value=5.8 Score=40.20 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 004006 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN-----EGLELDVFT 683 (779)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 683 (779)
...++..+...|++++|+..+..+.... +-++..|..+|.+|...|+..+|++.|+.+.. .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445666777788888887777776654 55777788888888888888888888777653 477776654
No 477
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.49 E-value=28 Score=33.86 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHH
Q 004006 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF----EDVMRDGLKPDVVLYNNII 548 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~g~~~~~~~~~~l~ 548 (779)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...+-++- +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344556667777777777776543221 233344444443332 3334456666666666666
Q ss_pred HHHHhCCCHH-HHHHHHHHHH----HcC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 549 RAFCGMGNMD-RAIHIVKEMQ----KER--HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (779)
Q Consensus 549 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 621 (779)
..+......+ .-..++++++ +.| ..=+......+...|.+.+++.+|+..|- .|-.+....|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6665544311 1122222222 222 22245566677788888888888887763 22222335554444433
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 622 VEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
...+...+ .+... ...+--|.-.++...|..++....
T Consensus 178 ~~~~~~~e--------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHT--------------APLYC-ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGG--------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33332111 11111 222234455677788877666554
No 478
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.36 E-value=7.8 Score=31.54 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
.-+..+-++.+....+-|+..+....+++|-+.+++.-|.++|+-++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555555555555443
No 479
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.01 E-value=32 Score=33.22 Aligned_cols=25 Identities=8% Similarity=-0.144 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 505 NMKTYSMLINGFLKLKDWANVFAVF 529 (779)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (779)
+......+...|.+.+++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5566666677777777777776655
No 480
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.93 E-value=17 Score=30.10 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=35.4
Q ss_pred CCHhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 364 MSLVTYSIIVGGFAKMGN---AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++..+......++++..+ ..+++.+++.+...+........+.|..++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445555555555555543 3345555555555433334444555555566666666666666665554
No 481
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.37 E-value=35 Score=33.21 Aligned_cols=25 Identities=0% Similarity=-0.020 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 505 NMKTYSMLINGFLKLKDWANVFAVF 529 (779)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (779)
+......+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555566667777777777776665
No 482
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.46 E-value=11 Score=38.71 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRAR--GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (779)
+..+...|.+.|++++|.++|.++... +...-...+-.+++.+...+++..+...++++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445667777777777777777776653 222233455556666666666666666666553
No 483
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.96 E-value=12 Score=38.44 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=39.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEE--GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
+...+...|.+.|++++|.++|.++... +..--...+..+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566677777777777777777777653 2222345666666667777777777766666643
No 484
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.57 E-value=39 Score=31.60 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=44.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 004006 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (779)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (779)
..+.+.|++++|++....-++.. +-|......++..+|-.|+++.|.+-++.+.+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34567788888888888777765 34788888888888888888888888888877643
No 485
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=77.59 E-value=82 Score=33.92 Aligned_cols=396 Identities=10% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
+....+.|++..+..+...+... ......--..+..-.......+...++++-.. .+.....-..-+..+.+.+++
T Consensus 13 a~~a~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 13 IKQAWDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCcccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCH
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
...+.++.. .-. +...-.....+....|+..+|....+.+-..| ....+.+-.+|..+
T Consensus 89 ~~~l~~~~~-~p~----~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-----------------~~~p~~c~~l~~~~ 146 (618)
T 1qsa_A 89 RGLLAFSPE-KPG----TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-----------------KSQPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHCCS-CCS----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-----------------SCCCTHHHHHHHHH
T ss_pred HHHHHhccC-CCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----------------CCCcHHHHHHHHHH
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004006 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (779)
Q Consensus 463 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (779)
.+.|.-.....+..+ ......|+...|..+...+-.. .......++..+.+-..+.........-.. +..
T Consensus 147 ~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~----~~~~a~~~~al~~~p~~~~~~~~~~~~~~~-----~~~ 216 (618)
T 1qsa_A 147 RASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLTFARTTGATDF-----TRQ 216 (618)
T ss_dssp HHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHHHHHHSCCCHH-----HHH
T ss_pred HHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHH----HHHHHHHHHHHHhChHhHHHHHhccCCChh-----hHH
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMK---RALEIFDMMRRSGCIPTVHTFNALIL 619 (779)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~ 619 (779)
.+...+.-+.+. +.+.|...|..........+......--..-.+.-... ++...+..... ...+.....-.+.
T Consensus 217 ~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~r 293 (618)
T 1qsa_A 217 MAAVAFASVARQ-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVR 293 (618)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cCCChHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCCC--------
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE------------GLEL-------- 679 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------~~~~-------- 679 (779)
...+.|+++.|...|+.|.... .......--+..++...|+.++|..+|+.+... |.+.
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~ 372 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP 372 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCC
Q ss_pred -------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 680 -------DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 680 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
........+..+...|....|...+..+.. ..+......+.......|.+..++.....
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~---~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK---SKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCChHHHHHHHHH
No 486
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.20 E-value=20 Score=29.25 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (779)
+..+-++.+...++.|+..+....+++|.|.+|+.-|+.+|+..+.+ ..+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34444444444555555555555555555555555555555555543 2223334444443
No 487
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.92 E-value=11 Score=35.19 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=73.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004006 654 HGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVW 733 (779)
Q Consensus 654 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 733 (779)
....+.|+++++++.+..-++.. +.|...-..|++.+|-.|+++.|.+-++.+.+.+ |+...-..+...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHH------
Confidence 34567899999999999888876 6688888999999999999999999998887754 44332221112221
Q ss_pred HHHHHHHHHHHcCCC-----CCHHHHHHHHHHHH--hcCCcchHHHhHhh
Q 004006 734 EAADLMQQMKQEGVQ-----PDVHTYTSFINACK--CSKSNQRNGRSWSE 776 (779)
Q Consensus 734 ~A~~~~~~m~~~g~~-----pd~~~~~~l~~a~~--~~g~~~~a~~~~~~ 776 (779)
.|+..-.+...-+-. ....-...|+.+.. ..|+.++|.++-..
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~ 125 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 125 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 223333333332212 22333456666644 46998888876554
No 488
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.32 E-value=20 Score=31.73 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=43.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 004006 344 GRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL 399 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 399 (779)
.++..++.++|..|...|+.-. ...|......+...|++++|.++|+..++.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3447788999999988876643 5667777888888899999999999888876554
No 489
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.77 E-value=16 Score=27.89 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 004006 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWF 389 (779)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (779)
.+.++|..+-+++...+. ...+--.-+..+.+.|+|++|+.+.+.+. -||.+.|..|.. .+.|.-+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356777777777766542 22222233345667777777777655443 456666665543 3667777777666
Q ss_pred HHHHHcC
Q 004006 390 EEAKERH 396 (779)
Q Consensus 390 ~~~~~~~ 396 (779)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665543
No 490
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=72.26 E-value=0.76 Score=49.32 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=7.3
Q ss_pred CChHHHHHHHhcc
Q 004006 163 IKKHLVMEFFRQF 175 (779)
Q Consensus 163 ~~~~~l~~~f~~~ 175 (779)
++.++.+++....
T Consensus 155 i~r~~ae~~L~~~ 167 (535)
T 2h8h_A 155 ITRRESERLLLNA 167 (535)
T ss_dssp CCHHHHHHHHTCT
T ss_pred cCHHHHHHHhccC
Confidence 4555666666544
No 491
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.45 E-value=16 Score=27.92 Aligned_cols=79 Identities=15% Similarity=0.004 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 004006 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWF 389 (779)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (779)
.+.++|..+-+++...+. ...+--.-+..+.+.|+|++|+.+.+.+. -||.+.|..|.. .+.|.-+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356777777777766542 22222233345667777777776654432 456666655543 4667777777766
Q ss_pred HHHHHcC
Q 004006 390 EEAKERH 396 (779)
Q Consensus 390 ~~~~~~~ 396 (779)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6665543
No 492
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=68.87 E-value=1 Score=48.39 Aligned_cols=6 Identities=0% Similarity=0.279 Sum_probs=2.4
Q ss_pred eCCHHH
Q 004006 201 YDGPAA 206 (779)
Q Consensus 201 f~~~~~ 206 (779)
|.+..+
T Consensus 222 F~SL~e 227 (535)
T 2h8h_A 222 FNSLQQ 227 (535)
T ss_dssp ESSHHH
T ss_pred ccChHH
Confidence 444433
No 493
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=68.81 E-value=1.3e+02 Score=32.47 Aligned_cols=346 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (779)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (779)
.+|-.|.++|++++|.++.++.... +.--...|...+..|+...+-.--.++-+++... |+..++......
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~e--------y~~~~r~~~~~D 227 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTE--------YNQHIKSSLDGD 227 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--------------------------------------C
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--------HHHHHhCCCCCC
Q ss_pred ChHHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004006 416 NMERAEALVRDMEEE------GIDAPIDIYHMMMDGYTIIG-----------NEEKCLIVFERLKECGFSPSIISYGCLI 478 (779)
Q Consensus 416 ~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~g~~~~~~~~~~li 478 (779)
-++.|.=.+---.+. .+..++.-|.-+=-.+.+.+ .+++....+.+.-+.-+.. ...
T Consensus 228 pyK~AvY~Iig~cD~~~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------lYf 301 (661)
T 2qx5_A 228 PYRLAVYKLIGRCDLSRKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------YYL 301 (661)
T ss_dssp HHHHHHHHHHHTCCGGGCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------CHH
T ss_pred HHHHHHHHHHhcccccccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------HHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---CC
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG---MG 555 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g 555 (779)
.++.-.|+++.|++.+-.. +...-..+.-++...|-... -+.+......-...-+..||..|.+ ..
T Consensus 302 ~vLlLtgqFE~AI~~L~~~-------~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~~~~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF-------SEMDAVHLAIGLASLKLFKI----DSSTRLTKKPKRDIRFANILANYTKSFRYS 370 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT-------CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHhhHHHHHHHHHhc-------CchhHHHHHHHHHHcCCccC----CCcccccCCCcccccHHHHHHHHHHHhhcC
Q ss_pred CHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhcCCHHHHH-----------HHHHHHHH-CCCCCCHHHHHHHHH---
Q 004006 556 NMDRAIHIVKEMQKER-HRPTSRTFMPIIHGFARAGEMKRAL-----------EIFDMMRR-SGCIPTVHTFNALIL--- 619 (779)
Q Consensus 556 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~-~~~~~~~~~~~~li~--- 619 (779)
+..+|.++|--+...+ ..-....+.++-......++++.-+ .++++... .++.-.......++.
T Consensus 371 d~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA 450 (661)
T 2qx5_A 371 DPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAA 450 (661)
T ss_dssp CHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHH
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCH
Q 004006 620 -GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL-----------------ELDV 681 (779)
Q Consensus 620 -~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------------~~~~ 681 (779)
-+...|++++|+.+|.- .|++++|++++.+.+..-+ ..-.
T Consensus 451 ~~ae~~G~~~dAi~LY~L----------------------a~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~ 508 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQL----------------------AEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPV 508 (661)
T ss_dssp HHHHHTTCHHHHHHHHHH----------------------TTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHH----------------------hcCHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Q ss_pred HHHHHHHHHHHHcCC--------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 682 FTYEALLKACCKSGR--------MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 682 ~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
.....++..|...+. ..++..++.++.+ +..++..|++++|++.++++
T Consensus 509 ~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~-------------f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 509 LLARRMASIYFDNAGISRQIHVKNKEICMLLLNISS-------------IRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHhC
No 494
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.70 E-value=98 Score=30.48 Aligned_cols=228 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 004006 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (779)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 554 (779)
..+|.-|...++.++|...++++......+.......-...=.+...-+.+-.++..+. .++-........+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------CCC
Q 004006 555 GN--------MDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS------------------GCI 608 (779)
Q Consensus 555 g~--------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------~~~ 608 (779)
.+ ++..-.++..+...++-+-.......... .-..+.+++++.... +..
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~ 211 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQ 211 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCCCSSS
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCc
Q ss_pred CCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHH
Q 004006 609 PTVHT---FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD--TGKAFEYFTKLRNEGLELDVFT 683 (779)
Q Consensus 609 ~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~ 683 (779)
+.... .+.++.-|...++.++|...++++.... .-.......+..++.+.++ .+....++..+...|+-.....
T Consensus 212 ~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 212 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_pred HHHHHHHHHHcCChH----HHHHHHHHHHh
Q 004006 684 YEALLKACCKSGRMQ----SALAVTKEMSA 709 (779)
Q Consensus 684 ~~~l~~~~~~~g~~~----~A~~~~~~~~~ 709 (779)
...+...+....++. .|..++.++..
T Consensus 291 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~va 320 (358)
T 3eiq_C 291 KRGYERIYNEIPDINLDVPHSYSVLERFVE 320 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhccHhhcccccHHHHHHHHHH
No 495
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=67.26 E-value=68 Score=28.49 Aligned_cols=202 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 004006 265 WHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG 344 (779)
Q Consensus 265 ~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (779)
|+...|.........+-..+-.....+..++...-...+..+.+.|.....-.+.+.+... +..+-...+.++.+.
T Consensus 2 w~~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 2 WSHPQFEKAAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE----DAWVRRAAADALGQI 77 (211)
T ss_dssp --------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----CHHHHHHHHHHHHHH
T ss_pred CcccccchhhhHhhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCC----CHHHHHHHHHHHHhh
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 004006 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALV 424 (779)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (779)
++.+..-.+.+.+... +..+....+.++.+.++.+....+.+.+... +..+-...+.++.+.+. .++...+
T Consensus 78 ~~~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~-~~~~~~L 148 (211)
T 3ltm_A 78 GDERAVEPLIKALKDE----DGWVRQSAAVALGQIGDERAVEPLIKALKDE----DWFVRIAAAFALGEIGD-ERAVEPL 148 (211)
T ss_dssp CCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC-GGGHHHH
T ss_pred CCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCC-HHHHHHH
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 425 RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
..+.+ .++..+-...+.++...+. .++...+..+.+. ++..+-...+.++.+.+.
T Consensus 149 ~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 149 IKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
No 496
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=67.15 E-value=11 Score=39.50 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
....++|+ .+..++..+|.++|+.|| -.+|+.+.| ..+||.|.+.+.|..++..+
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg-~v~V~widd--------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFG-NIQISWIDD--------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGC-CCEEEECSS--------SEEEEECSCHHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcC-CEEEEEEcC--------CeEEEEECCHHHHHHHHHHH
No 497
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=64.52 E-value=18 Score=26.11 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=0.0
Q ss_pred eEEec-cCCCcCChHHHHHHHhccCC-----eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 153 KIFVG-NLPNWIKKHLVMEFFRQFGP-----IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 153 ~~~v~-~l~~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
++||+ +--..++..+|..++..-+. |-.++|..+ |.||+- ..+.+..+++.+ ++..+.|+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~---------~s~v~v-~~~~~~~~~~~l--~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN---------ASYVEI-LNGKGPHVLKVM--KNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS---------CEEEEE-CTTCHHHHHHHH--TTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC---------cEEEEE-CHHHHHHHHHHh--ccccCcCceE
Q ss_pred EEEecC
Q 004006 227 TVKLDD 232 (779)
Q Consensus 227 ~v~~~~ 232 (779)
+|+.++
T Consensus 70 ~v~~~~ 75 (76)
T 2g0c_A 70 KVNKAN 75 (76)
T ss_dssp CEEECC
T ss_pred EEEECC
No 498
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=60.71 E-value=2.3e+02 Score=32.42 Aligned_cols=253 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred cCCccHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh--
Q 004006 276 TQPENWQAVVSAFER----IKKPSRREFGLMVNYYARRG--DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM-- 347 (779)
Q Consensus 276 ~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-- 347 (779)
.+..+|..+...+.. ++..++...-.=+-.+++.| .+..++++...+.... +...|..++..+....+.
T Consensus 635 Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l~l~~~l~~E~---~~~~w~~a~~~l~~l~~~~~ 711 (967)
T 3se6_A 635 YEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHET---SSPALLEGLSYLESFYHMMD 711 (967)
T ss_dssp EETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHTTGGGTCC---CHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHHHHh
Q ss_pred ----HHHHHHHHHHH--------------HcCCCCCHhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 348 ----EEALSCVRKMK--------------EEGIEMSLVTYSIIVGGFAKMGN---AEAADHWFEEAKERHATLNAIIYGN 406 (779)
Q Consensus 348 ----~~A~~~~~~m~--------------~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (779)
.+....|+... ..+-..+......++...|+.|. .++|.+.|++....+.......-..
T Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr 791 (967)
T 3se6_A 712 RRNISDISENLKRYLLQYFKPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVL 791 (967)
T ss_dssp HSCCHHHHHHHHHHHHHTTHHHHHHCCSSCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhh
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
-.-.|...++.++-..+++.... ..+..--..++.++....+.+...++++.......-..-.....+.........
T Consensus 792 ~~Vyc~~~~~~~~~~~l~~~y~~---s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~~i~~qd~~~~~~~v~~n~~g 868 (967)
T 3se6_A 792 KIVYSVGAQTTAGWNYLLEQYEL---SMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKG 868 (967)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH---CSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHHSTTH
T ss_pred hHhHhhhhccHHHHHHHHHHHhc---cCCHHHHHHHHHHhcCCCCHHHHHHHHHHHhCcCcCcHhHHHHHHHHHHcChhH
Q ss_pred HHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 487 VSKALEVSKV---MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 487 ~~~A~~~~~~---m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (779)
.+.|.+.+.. .....+..+...+..++......-.-++-++-++...+
T Consensus 869 ~~~~w~f~~~nw~~i~~~~~~~~~~~~~~i~~~~~~~~t~~~l~~~~~f~~ 919 (967)
T 3se6_A 869 QQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFE 919 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHTTTTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
No 499
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=60.43 E-value=24 Score=27.23 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 32 LSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLN 76 (779)
Q Consensus 32 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~ 76 (779)
....+++|+.|...++.|.+..++..++.+-+..||+-.-++..+
T Consensus 91 ~~~~~~~p~ap~~~p~~p~~~~p~~aP~~~~~~~PPPY~ep~a~q 135 (137)
T 1jvr_A 91 NQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQ 135 (137)
T ss_dssp TTCCCCCSCSSSSSCSSCCCCSCCCCCSSSCCSCCCCCCCSSCCC
T ss_pred hcCCCCCccccccCCCCCcccCCCCCCCcccccCCCCCCCccccc
No 500
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.41 E-value=49 Score=28.26 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHH
Q 004006 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMGNAEAADHWFE 390 (779)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (779)
++.++..|.....- ..|..-...-|..--..++ +.++|..|...|+.-. ...|......+-..|++.+|.++|.
T Consensus 46 LErc~~~f~~~~~Y--knD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 46 LERAVEALQGEKRY--YSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHHTTTCGGG--TTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhhhhh--ccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHcCCCC
Q 004006 391 EAKERHATL 399 (779)
Q Consensus 391 ~~~~~~~~~ 399 (779)
..++.+..|
T Consensus 121 ~Gi~~~A~P 129 (164)
T 2wvi_A 121 EGIQQKAEP 129 (164)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCCc
Done!