BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004007
         (779 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HWT|A Chain A, Nmr Solution Structure Of The Master-Rep Protein Nuclease
           Domain (2-95) From The Faba Bean Necrotic Yellows Virus
          Length = 94

 Score = 30.8 bits (68), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 698 PESPKIDREAMKELQELMEAREAGIAYILGHSYVKAKQGSSALKKLVINYGYEFLRRNTR 757
           P SP    ++MK L    E  EAG  +  G+  +K +   + +KKL+    +E  RR T+
Sbjct: 14  PLSPLSLHDSMKYLVYQTEQGEAGNIHFQGYIEMKKRTSLAGMKKLIPGAHFE-KRRGTQ 72

Query: 758 VPSYALSVPHASTLE 772
             + A S+   + LE
Sbjct: 73  GEARAYSMKEDTRLE 87


>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
           Thuringiensis
 pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
           Thuringiensis
 pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
           Thuringiensis
 pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
           Thuringiensis
          Length = 264

 Score = 29.3 bits (64), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 7   VYQNLVKKESWRTVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIKHSETNEEIFGALSF 66
           V  ++ KKE    ++  A    G +   ++ +  YV++     D +  E NE I G L+ 
Sbjct: 62  VQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTA 121

Query: 67  IFWTLTL-VPLLK 78
           +F  L L VP+++
Sbjct: 122 VFHLLKLVVPVMR 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,161,177
Number of Sequences: 62578
Number of extensions: 903405
Number of successful extensions: 2176
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2168
Number of HSP's gapped (non-prelim): 11
length of query: 779
length of database: 14,973,337
effective HSP length: 106
effective length of query: 673
effective length of database: 8,340,069
effective search space: 5612866437
effective search space used: 5612866437
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)