Query 004007
Match_columns 779
No_of_seqs 262 out of 782
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.4 0.033 1.1E-06 61.5 14.4 99 198-303 131-239 (511)
2 3gia_A Uncharacterized protein 96.2 0.0087 3E-07 64.9 8.2 107 170-287 98-208 (444)
3 3l1l_A Arginine/agmatine antip 95.0 0.066 2.2E-06 57.9 9.4 79 199-286 127-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 23.3 32 0.0011 31.9 1.8 22 749-772 30-51 (124)
5 3luu_A Uncharacterized protein 19.0 38 0.0013 29.9 1.4 22 748-769 34-55 (101)
6 2l6n_A Uncharacterized protein 18.3 48 0.0016 31.1 1.9 15 749-763 37-51 (132)
7 2rdd_B UPF0092 membrane protei 15.6 2E+02 0.0068 21.0 4.3 20 480-499 1-20 (37)
8 3ghp_A Cellulosomal scaffoldin 14.4 46 0.0016 33.8 0.7 13 243-255 46-58 (227)
9 1tyj_A Cellulosomal scaffoldin 12.9 46 0.0016 32.5 0.2 13 243-255 37-49 (170)
10 2od6_A Hypothetical protein; m 12.1 2.6E+02 0.0088 24.4 4.6 32 581-617 46-77 (110)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.39 E-value=0.033 Score=61.46 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=54.7
Q ss_pred ehhHHHHHHHHHhhhcccccccccchhhH----HHHHHHHHHHHHHHhhcccCccee----eecCHHHHHHHHHhcCCce
Q 004007 198 VPVACIILIGLFALQHYGTHRVGFLFAPV----VLIWLLCISAIGLYNIFHWNPHVY----QALSPCYMYKFVKKTQKGG 269 (779)
Q Consensus 198 v~is~~ILv~LF~iQ~~GT~kvg~~FgPI----m~vWf~~i~~~Giyni~~~~p~Vl----~AlnP~ya~~f~~~~~~~g 269 (779)
..+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..+
T Consensus 131 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 203 (511)
T 4djk_A 131 TIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVGT 203 (511)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTTT
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccchH
Confidence 45788888888899999988777654332 222344555667766654333211 1122211 12345
Q ss_pred EeeehhhhhhhcchhhhhccCCCCC--ccceeeehh
Q 004007 270 WMSLGGILLCITGSEAMFADLGHFS--QLSIKIAFT 303 (779)
Q Consensus 270 ~~~LG~V~L~iTGaEALyADlGHFg--~~~I~~aw~ 303 (779)
|..+..++.+.+|-|+.-.=-+-.- +|.+..|=.
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 6677888999999998644333332 344544433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.19 E-value=0.0087 Score=64.90 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=53.9
Q ss_pred cccCchhhhhhhccccccccccccceEEehhHHHHHHHHHhhhcccccccccc---hhhHHHHHHHHHHHHHHHhhcccC
Q 004007 170 VLTPALSVFSAVSGLELSTAKEHHKYVEVPVACIILIGLFALQHYGTHRVGFL---FAPVVLIWLLCISAIGLYNIFHWN 246 (779)
Q Consensus 170 vlTPAiSVLSAveGl~v~~p~~~~~~v~v~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWf~~i~~~Giyni~~~~ 246 (779)
+++.|....+..+=+....|...+......+++++++++..+..+|....+++ +..+.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 34455544444443333233322211113467888888888888997766554 44444444444445555443 4
Q ss_pred cceeee-cCHHHHHHHHHhcCCceEeeehhhhhhhcchhhhh
Q 004007 247 PHVYQA-LSPCYMYKFVKKTQKGGWMSLGGILLCITGSEAMF 287 (779)
Q Consensus 247 p~Vl~A-lnP~ya~~f~~~~~~~g~~~LG~V~L~iTGaEALy 287 (779)
|+-+.. ++|.-...+ +..+...+.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~~g~~~~--------~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAPSAVSGM--------IFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSHHHHHHH--------HHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCCcchHHH--------HHHHHHHHHHHHhHHHHH
Confidence 443322 333211111 123344567889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=94.98 E-value=0.066 Score=57.88 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhhhcccccccccc---hhhHHHHHHHHHHHHHHHhhcccCccee-eecCHHHHHHHHHhcCCce-Eeee
Q 004007 199 PVACIILIGLFALQHYGTHRVGFL---FAPVVLIWLLCISAIGLYNIFHWNPHVY-QALSPCYMYKFVKKTQKGG-WMSL 273 (779)
Q Consensus 199 ~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWf~~i~~~Giyni~~~~p~Vl-~AlnP~ya~~f~~~~~~~g-~~~L 273 (779)
.+++++++++..+--+|....+++ +.++.++=++.+. +..+...+|+.+ ..++|.-. .+..+ +..+
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~---i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 197 (445)
T 3l1l_A 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIA---VFGWFWFRGETYMAAWNVSGL------GTFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---HTTSTTCCCCCCCCC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhChhhcccccCccCC------ccHHHHHHHH
Confidence 367777777888888888777665 3443333233333 333444455543 33444210 00111 2234
Q ss_pred hhhhhhhcchhhh
Q 004007 274 GGILLCITGSEAM 286 (779)
Q Consensus 274 G~V~L~iTGaEAL 286 (779)
..++.+.+|-|+.
T Consensus 198 ~~~~~af~G~e~~ 210 (445)
T 3l1l_A 198 NVTLWSFIGVESA 210 (445)
T ss_dssp HHHHHTTTTTTHH
T ss_pred HHHHHHHHhHHHH
Confidence 4456778898875
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=23.33 E-value=32 Score=31.87 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHhhccCCCCcccccCCCCeEE
Q 004007 749 YEFLRRNTRVPSYALSVPHASTLE 772 (779)
Q Consensus 749 Y~FLRkNcR~~~~~L~IPh~~LlE 772 (779)
|.|||.||+.+...-. .+++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999876543 555543
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=19.02 E-value=38 Score=29.86 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHhhccCCCCcccccCCCC
Q 004007 748 GYEFLRRNTRVPSYALSVPHAS 769 (779)
Q Consensus 748 ~Y~FLRkNcR~~~~~L~IPh~~ 769 (779)
=|.|||.||+.+...-.-+.++
T Consensus 34 ~~~wLRd~c~ca~c~~~~t~qr 55 (101)
T 3luu_A 34 TFEHLRVECPCAECKGHTPDQA 55 (101)
T ss_dssp EHHHHHHTCCCC----------
T ss_pred CHHHHHhhCCChhhcCccCCcc
Confidence 4789999999877654433333
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=18.27 E-value=48 Score=31.07 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=12.3
Q ss_pred HHHHhhccCCCCccc
Q 004007 749 YEFLRRNTRVPSYAL 763 (779)
Q Consensus 749 Y~FLRkNcR~~~~~L 763 (779)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 689999999976553
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.57 E-value=2e+02 Score=21.04 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=10.9
Q ss_pred CccHHHHHHHHHHHHHHHhh
Q 004007 480 GAWVPIALAFIFLIVMCVWH 499 (779)
Q Consensus 480 GGW~pl~ia~~~~~iM~~W~ 499 (779)
|||..++.-++++.+||..-
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMI 20 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45655555555556665443
No 8
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=14.40 E-value=46 Score=33.77 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=0.0
Q ss_pred cccCcceeeecCH
Q 004007 243 FHWNPHVYQALSP 255 (779)
Q Consensus 243 ~~~~p~Vl~AlnP 255 (779)
++|||+||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
No 9
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=12.88 E-value=46 Score=32.54 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=0.0
Q ss_pred cccCcceeeecCH
Q 004007 243 FHWNPHVYQALSP 255 (779)
Q Consensus 243 ~~~~p~Vl~AlnP 255 (779)
++|||+||+|+||
T Consensus 37 IKYDP~vLQaV~~ 49 (170)
T 1tyj_A 37 IKYNTTYLQPWDT 49 (170)
T ss_dssp EECCTTTEEEEET
T ss_pred eeeChhheecccc
No 10
>2od6_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE OHA; 1.85A {Uncultured marine organism} SCOP: d.58.4.22
Probab=12.06 E-value=2.6e+02 Score=24.37 Aligned_cols=32 Identities=22% Similarity=0.654 Sum_probs=0.0
Q ss_pred cEEEEEecCCCccEEEEEEEEeeecccCCchHHHHHH
Q 004007 581 RFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDL 617 (779)
Q Consensus 581 R~~v~~l~~~~~~~yR~~vryGY~d~~~~~~~F~~~l 617 (779)
+|...|+-.++ .+||++..|-|+|. ..||..+
T Consensus 46 kfsmnrvwnkg-evfrvvmtyeykdr----asfeani 77 (110)
T 2od6_A 46 KFSMNRVWNKG-EVFRVVMTYEYKDR----ASFEANI 77 (110)
T ss_dssp EEEEEEECSSS-SCEEEEEEEEESSH----HHHHHHH
T ss_pred hhhhhhhccCC-cEEEEEEEEEeccc----hhhhhhh
Done!