Query 004007
Match_columns 779
No_of_seqs 262 out of 782
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 11:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004007.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004007hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 17.3 38 0.0027 21.6 2.2 20 481-500 5-24 (27)
2 d2yvxa3 f.57.1.1 (A:276-448) M 13.7 34 0.0025 31.2 1.9 119 308-442 12-132 (173)
3 d1or7a2 a.177.1.1 (A:-1-111) S 9.5 76 0.0055 25.5 2.6 24 737-760 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.3 51 0.0037 24.8 0.9 40 308-352 15-54 (57)
5 d1ug8a_ d.68.7.1 (A:) Poly(A)- 6.2 1.3E+02 0.0093 24.5 2.4 21 609-629 8-28 (87)
6 d1iray2 b.1.1.4 (Y:102-204) Ty 5.7 1.7E+02 0.012 23.3 2.9 26 579-604 57-82 (103)
7 d2bnma1 a.35.1.3 (A:6-76) Hydr 5.5 72 0.0053 24.2 0.4 14 87-100 38-51 (71)
8 d1krha2 c.25.1.2 (A:206-338) B 5.4 2E+02 0.015 23.3 3.4 41 363-403 17-57 (133)
9 d1jl0a_ d.156.1.1 (A:) S-adeno 4.7 88 0.0064 31.2 0.5 38 691-728 109-147 (325)
10 d1f2qa2 b.1.1.4 (A:86-174) IgE 4.7 2E+02 0.015 21.8 2.7 40 571-610 40-79 (89)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.33 E-value=38 Score=21.61 Aligned_cols=20 Identities=35% Similarity=0.876 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHHHHHHhhh
Q 004007 481 AWVPIALAFIFLIVMCVWHY 500 (779)
Q Consensus 481 GW~pl~ia~~~~~iM~~W~~ 500 (779)
||+.++.-..-.+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888888777888888854
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=13.67 E-value=34 Score=31.21 Aligned_cols=119 Identities=8% Similarity=0.053 Sum_probs=67.8
Q ss_pred hHHHHhccch--hhhhhcCCCCCccccccceeeccCcchhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhCCCCceeEE
Q 004007 308 PSLILAYMGQ--AAYLSQHHVLDNDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIV 385 (779)
Q Consensus 308 P~L~l~Y~GQ--~A~ll~~p~~~~~~~npFy~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki~ 385 (779)
|-|+++.+|+ +|+++.+- |+.-+-+-. =..+.|+ ++-.+.-++||+.. ++-+++++|-+-+-.
T Consensus 12 pWL~i~l~~~~~~a~ii~~F---e~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~-- 76 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGF---ESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD-- 76 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh--
Confidence 4455555554 56677654 333332211 1256666 67778888999874 888999999643211
Q ss_pred ecCCccCCceeechhHHHHHHHhheeEEeecCcchhcccccceehhHHHHHHHHHHH
Q 004007 386 HTSSKIHGQIYIPEINWILMILCLAVTIGFRDTKRMGNASGLAVITVMLVTTCLMSL 442 (779)
Q Consensus 386 hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~ 442 (779)
.-+...-++.+-.+|=+.+-..+.....+++...++-+=|++...+|++.+++=++
T Consensus 77 -~~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 77 -WRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223345667777766665555444445555556555555555555555554433
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=9.50 E-value=76 Score=25.55 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHHhhccCCCC
Q 004007 737 SSALKKLVINYGYEFLRRNTRVPS 760 (779)
Q Consensus 737 Ss~lKK~vIn~~Y~FLRkNcR~~~ 760 (779)
.+|+.+++-|.++.++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998764
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.30 E-value=51 Score=24.83 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=26.9
Q ss_pred hHHHHhccchhhhhhcCCCCCccccccceeeccCcchhHHHHHHH
Q 004007 308 PSLILAYMGQAAYLSQHHVLDNDYRIGFYVSVPEKLRWPVLVIAI 352 (779)
Q Consensus 308 P~L~l~Y~GQ~A~ll~~p~~~~~~~npFy~~~P~~~~~P~~vlAt 352 (779)
-++++--++=+.|+.++. . .|.-|.++|+.+.|-.+-+.|
T Consensus 15 ~~i~i~~~s~~~y~~E~~---~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERG---A--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHTT---S--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC---C--CCccccccchhhhhheeeeec
Confidence 344444556677788775 2 334599999999997765544
No 5
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.19 E-value=1.3e+02 Score=24.52 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHcCC
Q 004007 609 DDMEFEKDLVCSIAEFIRSGS 629 (779)
Q Consensus 609 ~~~~F~~~lv~~L~~FI~~e~ 629 (779)
+..+|.+++++.|.+|+.+|+
T Consensus 8 d~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 8 DQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHcCcc
Confidence 447899999999999998754
No 6
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.67 E-value=1.7e+02 Score=23.31 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=21.0
Q ss_pred CccEEEEEecCCCccEEEEEEEEeee
Q 004007 579 EERFLVGHIGPRQYRIYRCIVRYGYR 604 (779)
Q Consensus 579 ~eR~~v~~l~~~~~~~yR~~vryGY~ 604 (779)
+..+.+..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 44577888888888999999998764
No 7
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=5.52 E-value=72 Score=24.19 Aligned_cols=14 Identities=50% Similarity=0.798 Sum_probs=12.0
Q ss_pred cCCCCChHHHHHHH
Q 004007 87 DDNGEGGTFALYSL 100 (779)
Q Consensus 87 dn~GEGG~fALysL 100 (779)
=.|||||-+.|..|
T Consensus 38 wengeggeltltql 51 (71)
T d2bnma1 38 WENGEGGELTLTQL 51 (71)
T ss_dssp HHTTTCTTCBHHHH
T ss_pred hhcCCCceeeHHHH
Confidence 36999999999876
No 8
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=5.45 E-value=2e+02 Score=23.34 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHhCCCCceeEEecCCccCCceeechhHHH
Q 004007 363 ITGTFSIIKQCSALGCFPRVKIVHTSSKIHGQIYIPEINWI 403 (779)
Q Consensus 363 Isg~FSi~~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~ 403 (779)
|+-..|+++++.+.+.-++++++|..+...--+|-.++..+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l 57 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHH
No 9
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.75 E-value=88 Score=31.17 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred cccccccC-CCCccchhHHHHHHHHHHHHHcCcEEEEee
Q 004007 691 KRVRFVVP-ESPKIDREAMKELQELMEAREAGIAYILGH 728 (779)
Q Consensus 691 ~~~~f~~~-~~~~~~~~v~eEL~~L~~A~eaGVvYIlG~ 728 (779)
+|.+|..| .+...+...++|.+.|++....|..|++|+
T Consensus 109 sRknf~fP~~Q~~pH~sf~~Ev~~L~~~f~~G~aY~~G~ 147 (325)
T d1jl0a_ 109 SRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGR 147 (325)
T ss_dssp EEECCSSGGGCCTTCSSHHHHHHHHHTTCSSEEEEEESC
T ss_pred ecccCcCcccCCcccCCHHHHHHHHHHhCCCCceEEecC
No 10
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.72 E-value=2e+02 Score=21.79 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=0.0
Q ss_pred ecccccCCCccEEEEEecCCCccEEEEEEEEeeecccCCc
Q 004007 571 VPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDD 610 (779)
Q Consensus 571 ~~vP~V~~~eR~~v~~l~~~~~~~yR~~vryGY~d~~~~~ 610 (779)
..++.-....++.+..+...+-|.|+|.++.++.+.....
T Consensus 40 ~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~ 79 (89)
T d1f2qa2 40 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEP 79 (89)
T ss_dssp EECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred eccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeee
Done!