Your job contains 1 sequence.
>004009
MDSQQTNLFETASQPDTGTDAYTFLEFNTQGESDFDAYPEFRSPVSWPTPSDSLSVDPTT
PVTPATPSDSRSAPPASDHHHHHNHHRHSDSLAATSSPSKRGANNSSNTSTSQIVEGMAG
LSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHI
VNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNM
MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVG
HVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGY
IYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTV
TSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLT
LHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCV
GAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARA
GLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFP
WPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEG
QRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTKT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004009
(779 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2171007 - symbol:LBA1 "LOW-LEVEL BETA-AMYLASE ... 2583 0. 2
UNIPROTKB|E1C0J4 - symbol:UPF1 "Uncharacterized protein" ... 2051 1.3e-259 2
ZFIN|ZDB-GENE-040426-2836 - symbol:upf1 "upf1 regulator o... 2044 1.7e-257 2
UNIPROTKB|E1BEK9 - symbol:UPF1 "Uncharacterized protein" ... 2023 5.6e-257 2
UNIPROTKB|E2RL81 - symbol:UPF1 "Uncharacterized protein" ... 2023 5.6e-257 2
UNIPROTKB|Q92900 - symbol:UPF1 "Regulator of nonsense tra... 2023 7.2e-257 2
UNIPROTKB|E1C0J3 - symbol:UPF1 "Uncharacterized protein" ... 2022 1.5e-256 2
MGI|MGI:107995 - symbol:Upf1 "UPF1 regulator of nonsense ... 2019 1.5e-256 2
UNIPROTKB|G4ND47 - symbol:MGG_00976 "Regulator-nonsense t... 1833 5.8e-233 2
FB|FBgn0030354 - symbol:Upf1 "Upf1" species:7227 "Drosoph... 1801 4.7e-231 2
ASPGD|ASPL0000056713 - symbol:AN0646 species:162425 "Emer... 1835 1.8e-229 2
POMBASE|SPAC16C9.06c - symbol:upf1 "ATP-dependent RNA hel... 1688 9.6e-209 2
SGD|S000004685 - symbol:NAM7 "ATP-dependent RNA helicase ... 1564 4.6e-198 2
CGD|CAL0003666 - symbol:NAM7 species:5476 "Candida albica... 1555 2.3e-196 2
UNIPROTKB|Q5A507 - symbol:NAM7 "Putative uncharacterized ... 1555 2.3e-196 2
WB|WBGene00004880 - symbol:smg-2 species:6239 "Caenorhabd... 1542 7.7e-196 2
DICTYBASE|DDB_G0288923 - symbol:upf1 "regulator of nonsen... 1490 1.7e-191 2
CGD|CAL0001700 - symbol:orf19.702 species:5476 "Candida a... 477 3.0e-51 3
POMBASE|SPCC737.07c - symbol:SPCC737.07c "DNA polymerase ... 519 8.5e-50 1
SGD|S000000978 - symbol:ECM32 "DNA dependent ATPase/DNA h... 468 4.5e-47 2
RGD|1589127 - symbol:LOC684558 "similar to regulator of n... 458 7.8e-43 1
RGD|2322000 - symbol:LOC100363957 "hypothetical protein L... 460 1.4e-40 1
GENEDB_PFALCIPARUM|MAL7P1.12 - symbol:MAL7P1.12 "erythroc... 373 6.4e-40 2
UNIPROTKB|Q8IC35 - symbol:MAL7P1.12 "Erythrocyte membrane... 373 6.4e-40 2
TAIR|locus:2162858 - symbol:AT5G35970 species:3702 "Arabi... 451 1.6e-39 2
TAIR|locus:2056896 - symbol:AT2G03270 species:3702 "Arabi... 438 5.7e-39 1
UNIPROTKB|E1BG37 - symbol:E1BG37 "Uncharacterized protein... 444 9.1e-39 1
UNIPROTKB|F1PCI1 - symbol:C4orf21 "Uncharacterized protei... 443 1.5e-38 1
UNIPROTKB|Q6ZU11 - symbol:Q6ZU11 "Uncharacterized protein... 432 2.0e-37 1
UNIPROTKB|F1RY71 - symbol:IGHMBP2 "Uncharacterized protei... 432 2.3e-37 1
DICTYBASE|DDB_G0268924 - symbol:DDB_G0268924 "Helicase SE... 351 3.8e-37 2
DICTYBASE|DDB_G0268662 - symbol:DDB_G0268662 "DNA2/NAM7 h... 342 1.0e-36 2
ZFIN|ZDB-GENE-070912-617 - symbol:si:dkey-97a13.6 "si:dke... 334 3.5e-36 4
DICTYBASE|DDB_G0289529 - symbol:DDB_G0289529 species:4468... 344 1.0e-35 2
DICTYBASE|DDB_G0268660 - symbol:DDB_G0268660 "DNA2/NAM7 h... 339 1.8e-35 3
UNIPROTKB|F1MHU8 - symbol:IGHMBP2 "Uncharacterized protei... 414 2.2e-35 1
UNIPROTKB|E2R760 - symbol:IGHMBP2 "Uncharacterized protei... 414 2.3e-35 1
POMBASE|SPAC6G9.10c - symbol:sen1 "ATP-dependent 5' to 3'... 363 2.4e-35 3
UNIPROTKB|E2R8W1 - symbol:IGHMBP2 "Uncharacterized protei... 414 2.4e-35 1
UNIPROTKB|Q60560 - symbol:IGHMBP2 "DNA-binding protein SM... 413 3.0e-35 1
SGD|S000001500 - symbol:HCS1 "Hexameric DNA polymerase al... 292 3.5e-35 2
UNIPROTKB|E1BY42 - symbol:E1BY42 "Uncharacterized protein... 411 4.8e-35 1
DICTYBASE|DDB_G0268914 - symbol:DDB_G0268914 species:4468... 335 1.2e-34 2
RGD|68325 - symbol:Ighmbp2 "immunoglobulin mu binding pro... 407 1.4e-34 1
UNIPROTKB|Q9EQN5 - symbol:Ighmbp2 "DNA-binding protein SM... 407 1.4e-34 1
UNIPROTKB|Q9BYK8 - symbol:HELZ2 "Helicase with zinc finge... 333 2.2e-34 3
UNIPROTKB|G5EA02 - symbol:C4orf21 "Uncharacterized protei... 432 2.7e-34 3
MGI|MGI:99954 - symbol:Ighmbp2 "immunoglobulin mu binding... 404 3.0e-34 1
UNIPROTKB|E1BQD2 - symbol:C4H4orf21 "Uncharacterized prot... 402 4.0e-34 1
ZFIN|ZDB-GENE-070402-1 - symbol:setx "senataxin" species:... 369 5.5e-34 2
SGD|S000004422 - symbol:SEN1 "Presumed helicase and subun... 348 9.9e-34 2
UNIPROTKB|P38935 - symbol:IGHMBP2 "DNA-binding protein SM... 399 1.1e-33 1
TAIR|locus:2059088 - symbol:AT2G19120 "AT2G19120" species... 363 1.4e-33 4
TAIR|locus:2166173 - symbol:AT5G37150 species:3702 "Arabi... 326 1.5e-33 2
UNIPROTKB|G4NIZ8 - symbol:MGG_02784 "DNA-binding protein ... 359 6.1e-33 2
ZFIN|ZDB-GENE-070424-144 - symbol:si:ch211-183d5.1 "si:ch... 375 7.5e-33 1
TAIR|locus:2130384 - symbol:MAA3 "MAGATAMA 3" species:370... 361 8.0e-33 2
RGD|1306056 - symbol:Pric285 "peroxisomal proliferator-ac... 332 3.0e-32 4
TAIR|locus:2173033 - symbol:AT5G52090 species:3702 "Arabi... 323 1.8e-31 2
TAIR|locus:2126480 - symbol:AT4G30100 species:3702 "Arabi... 344 2.0e-31 3
TAIR|locus:2200996 - symbol:SDE3 "SILENCING DEFECTIVE" sp... 280 3.2e-31 2
CGD|CAL0003335 - symbol:SEN1 species:5476 "Candida albica... 344 4.3e-31 2
TAIR|locus:2166163 - symbol:AT5G37140 species:3702 "Arabi... 316 4.5e-31 3
TAIR|locus:2166183 - symbol:AT5G37160 species:3702 "Arabi... 302 6.6e-31 3
UNIPROTKB|E2RBM4 - symbol:PRIC285 "Uncharacterized protei... 326 2.9e-30 4
UNIPROTKB|E1C4T7 - symbol:Gga.18015 "Uncharacterized prot... 330 4.2e-30 4
UNIPROTKB|J9NRI6 - symbol:DNA2 "Uncharacterized protein" ... 317 8.2e-30 3
UNIPROTKB|E1C0Z0 - symbol:HELZ2 "Uncharacterized protein"... 299 9.3e-30 3
POMBASE|SPBC29A10.10c - symbol:SPBC29A10.10c "tRNA-splici... 382 1.1e-29 2
DICTYBASE|DDB_G0285243 - symbol:DDB_G0285243 "putative sp... 363 3.0e-29 1
UNIPROTKB|F6UZP1 - symbol:DNA2 "Uncharacterized protein" ... 317 1.7e-28 3
UNIPROTKB|E2QSH2 - symbol:E2QSH2 "Uncharacterized protein... 317 1.9e-28 3
TAIR|locus:2135472 - symbol:AT4G05540 species:3702 "Arabi... 302 2.0e-28 2
UNIPROTKB|F1PHA4 - symbol:SETX "Uncharacterized protein" ... 302 2.3e-28 2
UNIPROTKB|E1BAS6 - symbol:SETX "Uncharacterized protein" ... 305 2.8e-28 3
TAIR|locus:2018561 - symbol:AT1G65810 species:3702 "Arabi... 291 1.2e-27 2
TAIR|locus:2152627 - symbol:AT5G37030 species:3702 "Arabi... 315 1.9e-27 2
DICTYBASE|DDB_G0274399 - symbol:DDB_G0274399 "DNA2/NAM7 h... 311 2.9e-27 2
UNIPROTKB|F1RMM8 - symbol:LOC100519780 "Uncharacterized p... 287 3.1e-27 2
TAIR|locus:2018536 - symbol:AT1G65780 species:3702 "Arabi... 289 4.2e-27 2
UNIPROTKB|F1S0U6 - symbol:SETX "Uncharacterized protein" ... 300 7.4e-27 4
ZFIN|ZDB-GENE-061013-333 - symbol:zgc:154086 "zgc:154086"... 268 9.6e-27 2
CGD|CAL0006154 - symbol:orf19.6199 species:5476 "Candida ... 210 2.6e-26 2
UNIPROTKB|Q5AAW1 - symbol:HCS1 "Putative uncharacterized ... 210 2.6e-26 2
DICTYBASE|DDB_G0271732 - symbol:DDB_G0271732 "AN1-type zi... 331 3.1e-26 1
UNIPROTKB|D4AEB3 - symbol:Setx "Protein Setx" species:101... 287 4.0e-26 3
UNIPROTKB|Q4S102 - symbol:GSTENG00025786001 "Chromosome 5... 296 6.5e-26 2
UNIPROTKB|Q7Z333 - symbol:SETX "Probable helicase senatax... 288 1.1e-25 3
MGI|MGI:2443480 - symbol:Setx "senataxin" species:10090 "... 284 3.2e-25 4
ZFIN|ZDB-GENE-091230-8 - symbol:mov10a "Moloney leukemia ... 225 4.2e-25 2
UNIPROTKB|F1PYQ4 - symbol:DNA2 "Uncharacterized protein" ... 283 9.2e-25 3
FB|FBgn0034187 - symbol:CG6967 species:7227 "Drosophila m... 315 1.2e-24 1
UNIPROTKB|G4MK85 - symbol:MGG_02491 "DNA replication ATP-... 177 1.8e-24 4
UNIPROTKB|H0Y455 - symbol:DNA2 "DNA replication ATP-depen... 207 2.9e-24 2
POMBASE|SPBC16D10.04c - symbol:dna2 "DNA replication endo... 272 5.7e-24 2
UNIPROTKB|F1SBP9 - symbol:MOV10 "Uncharacterized protein"... 240 8.1e-24 2
UNIPROTKB|Q5ZKG3 - symbol:DNA2 "DNA replication ATP-depen... 246 1.2e-23 2
MGI|MGI:2443732 - symbol:Dna2 "DNA replication helicase 2... 206 5.4e-23 3
UNIPROTKB|I3LBB7 - symbol:I3LBB7 "Uncharacterized protein... 274 7.5e-23 1
UNIPROTKB|P51530 - symbol:DNA2 "DNA replication ATP-depen... 212 7.9e-23 3
WARNING: Descriptions of 70 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2171007 [details] [associations]
symbol:LBA1 "LOW-LEVEL BETA-AMYLASE 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=IGI]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA;RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0009755 "hormone-mediated
signaling pathway" evidence=RCA] [GO:0048825 "cotyledon
development" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0009744 "response to sucrose stimulus"
evidence=IGI] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005886 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016246 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0009744 GO:GO:0008270 GO:GO:0010182
GO:GO:0004386 GO:GO:0000932 eggNOG:COG1112 InterPro:IPR014001
PROSITE:PS51192 EMBL:AB013394 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL EMBL:AF484122 IPI:IPI00541997 RefSeq:NP_199512.2
UniGene:At.8584 ProteinModelPortal:Q9FJR0 SMR:Q9FJR0 STRING:Q9FJR0
PaxDb:Q9FJR0 PRIDE:Q9FJR0 EnsemblPlants:AT5G47010.1 GeneID:834747
KEGG:ath:AT5G47010 GeneFarm:2422 TAIR:At5g47010 InParanoid:Q9FJR0
PhylomeDB:Q9FJR0 ProtClustDB:CLSN2680462 Genevestigator:Q9FJR0
GermOnline:AT5G47010 Uniprot:Q9FJR0
Length = 1254
Score = 2583 (914.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 497/531 (93%), Positives = 518/531 (97%)
Query: 240 MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSV 299
MMKESQSK+N+T+RWDIGLNKKRVAYFVFPKE+NELRLVPGDELRLRYSGDA HP+WQSV
Sbjct: 338 MMKESQSKENLTVRWDIGLNKKRVAYFVFPKEENELRLVPGDELRLRYSGDAVHPSWQSV 397
Query: 300 GHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSG 359
GHVIKLTAQEEVALELRA+QGVP+D+NHGFSVDFVWKSTSFDRMQGAMK FAVDETSVSG
Sbjct: 398 GHVIKLTAQEEVALELRANQGVPIDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSG 457
Query: 360 YIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKT 419
YIYH LLGHEVE QMVRNTLPRRFG PGLPELNASQV AVKSVLQ+PISLIQGPPGTGKT
Sbjct: 458 YIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKT 517
Query: 420 VTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHL 479
VTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVE+L
Sbjct: 518 VTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEYL 577
Query: 480 TLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTC 539
TLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYK LKRATEREI+QSADVICCTC
Sbjct: 578 TLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTC 637
Query: 540 VGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAAR 599
VGA D RL+NFRFRQVLIDESTQATEPECLIPLVLG KQVVLVGDHCQLGPVIMCKKAAR
Sbjct: 638 VGAADLRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAAR 697
Query: 600 AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659
AGLAQSLFERLV LG+KPIRLQVQYRMHP+LSEFPSNSFYEGTLQNGVTI ERQ++GIDF
Sbjct: 698 AGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDF 757
Query: 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYE 719
PWPVPNRPMFFYVQ+GQEEISASGTSYLNRTEAANVEK+VT FL+SGVVPSQIGVITPYE
Sbjct: 758 PWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYE 817
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
GQRAYIVNYM+RNG+LRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ
Sbjct: 818 GQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 868
Score = 810 (290.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 156/257 (60%), Positives = 181/257 (70%)
Query: 1 MDSQQTNLFETASQPDTGTDAYTFLEFNTQGESDFDAYPEFRSPVSWPTPSDSLXXXXXX 60
MDSQQ++LF+TASQPDT D YTFLEFNTQG+S+FD Y +F SP +WPTPSDS+
Sbjct: 1 MDSQQSDLFDTASQPDTVADEYTFLEFNTQGDSEFD-YQDFGSPTAWPTPSDSISIADVA 59
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAATSSPSKRGANN-SSNTSTSQIVEGMA 119
A G+ SS++ + G+
Sbjct: 60 DRGEGGAAADHHSEASSPSSLSAGAGNG----AKVGRGGVGGSGGVSSSSQVDALAAGVG 115
Query: 120 GLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSH 179
L+FEETGDD +GF+YGK DFTEHAC+YCG+SNPACVVRCNV SCRKWFCNSRGNTSGSH
Sbjct: 116 NLNFEETGDD-DGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSH 174
Query: 180 IVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLN 239
IVNHLVRAKHKEVCLH+DSPLGETILECYNCGCRNVFLLGFISAKT+SVVVLLCR+PCLN
Sbjct: 175 IVNHLVRAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLN 234
Query: 240 MMKESQSKDNVTIRWDI 256
+ + KD + WD+
Sbjct: 235 V---NALKD---MNWDL 245
>UNIPROTKB|E1C0J4 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
GeneTree:ENSGT00550000074391 EMBL:AADN02071779 IPI:IPI00598917
Ensembl:ENSGALT00000005099 NextBio:20823079 ArrayExpress:E1C0J4
Uniprot:E1C0J4
Length = 1117
Score = 2051 (727.0 bits), Expect = 1.3e-259, Sum P(2) = 1.3e-259
Identities = 379/532 (71%), Positives = 456/532 (85%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVG 300
+KESQ++DN+T+RWD+GLNKKR+AYF PK D+++RL+ GDE+ LRY GD A P W+ +G
Sbjct: 319 LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLA-PLWKGIG 377
Query: 301 HVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVS 358
HVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+KTFAVDETSVS
Sbjct: 378 HVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS 437
Query: 359 GYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGK 418
GYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+SLIQGPPGTGK
Sbjct: 438 GYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK 497
Query: 419 TVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEH 478
TVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAKSREA+ SPV
Sbjct: 498 TVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSF 557
Query: 479 LTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCT 538
L LH Q+R++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE+ +ADVICCT
Sbjct: 558 LALHNQIRNMDSMP--ELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT 615
Query: 539 CVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAA 598
CVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQLGPV+MCKKAA
Sbjct: 616 CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA 675
Query: 599 RAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID 658
+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGVT +R G D
Sbjct: 676 KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD 735
Query: 659 FPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPY 718
F WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G P QIG+ITPY
Sbjct: 736 FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY 795
Query: 719 EGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
EGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+NEHQ
Sbjct: 796 EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ 847
Score = 471 (170.9 bits), Expect = 1.3e-259, Sum P(2) = 1.3e-259
Identities = 95/156 (60%), Positives = 111/156 (71%)
Query: 100 KRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRC 159
+ GA + + TSQ+ +A L+FEE +D Y D HAC YCG+ +PACVV C
Sbjct: 84 QNGAVDDNVAKTSQL---LAELNFEEDEEDT----YYTKDLPVHACSYCGIHDPACVVYC 136
Query: 160 NVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + +KWFCN RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLG
Sbjct: 137 N--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 194
Query: 220 FISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD 255
FI AK +SVVVLLCR+PC + +S KD I WD
Sbjct: 195 FIPAKADSVVVLLCRQPCAS---QSSLKD---INWD 224
Score = 53 (23.7 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 382 RFGAPGLPELNASQVFAVKSVLQRPISLIQGP 413
RFG PG + N A + V+ +P S QGP
Sbjct: 1023 RFGIPGTSQSNLPNSQASQDVVSQPFS--QGP 1052
Score = 37 (18.1 bits), Expect = 1.0e-213, Sum P(2) = 1.0e-213
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 124 EETGDDVEGFEYGKADFT 141
E G D +G E+ DFT
Sbjct: 22 ELLGADTQGSEFEFTDFT 39
>ZFIN|ZDB-GENE-040426-2836 [details] [associations]
symbol:upf1 "upf1 regulator of nonsense
transcripts homolog (yeast)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] InterPro:IPR018999 Pfam:PF09416
ZFIN:ZDB-GENE-040426-2836 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0009790 GO:GO:0004386
HOGENOM:HOG000205990 KO:K14326 CTD:5976 HOVERGEN:HBG061556
EMBL:BC045353 EMBL:FM986817 IPI:IPI00491565 RefSeq:NP_998639.1
UniGene:Dr.96025 SMR:Q7ZVZ4 STRING:Q7ZVZ4 GeneID:406783
KEGG:dre:406783 NextBio:20818296 Uniprot:Q7ZVZ4
Length = 1100
Score = 2044 (724.6 bits), Expect = 1.7e-257, Sum P(2) = 1.7e-257
Identities = 380/533 (71%), Positives = 456/533 (85%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDN-ELRLVPGDELRLRYSGDAAHPAWQSV 299
+KESQ++DN+T+RWD+GLNKKR+AYF PK D+ ++RL+ GDE+ LRY GD A P W+ +
Sbjct: 299 LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMA-PLWKGI 357
Query: 300 GHVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSV 357
GHVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+KTFAVDETSV
Sbjct: 358 GHVIKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSV 417
Query: 358 SGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTG 417
SGYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+SLIQGPPGTG
Sbjct: 418 SGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTG 477
Query: 418 KTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVE 477
KTVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAKSREA+ SPV
Sbjct: 478 KTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVS 537
Query: 478 HLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICC 537
L LH Q+R++D+ EL KLQQLKDE GELSSSDEK+Y+ALKR ERE+ +ADVICC
Sbjct: 538 FLALHNQIRNMDSMP--ELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICC 595
Query: 538 TCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKA 597
TCVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQLGPV+MCKKA
Sbjct: 596 TCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKA 655
Query: 598 ARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGI 657
A+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGVT +R G
Sbjct: 656 AKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRLKKGF 715
Query: 658 DFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITP 717
DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G P QIG+ITP
Sbjct: 716 DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITP 775
Query: 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
YEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+NEHQ
Sbjct: 776 YEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ 828
Score = 458 (166.3 bits), Expect = 1.7e-257, Sum P(2) = 1.7e-257
Identities = 94/145 (64%), Positives = 106/145 (73%)
Query: 111 TSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCN 170
TSQ+ +A L+FEE D E Y K HAC YCG+ +PACVV CN + +KWFCN
Sbjct: 75 TSQL---LAELNFEE---DEEDTYYTKV-LPVHACSYCGIHDPACVVYCN--TSKKWFCN 125
Query: 171 SRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVV 230
RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLGFI AK +SVVV
Sbjct: 126 GRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVV 185
Query: 231 LLCREPCLNMMKESQSKDNVTIRWD 255
LLCR+PC + +S KD I WD
Sbjct: 186 LLCRQPCAS---QSSLKD---INWD 204
Score = 38 (18.4 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 373 QMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPIS 408
Q R T G P +P ASQ + Q P++
Sbjct: 1002 QRNRGTGNHGSGQPNMPNSQASQDLVSQPFSQGPLT 1037
Score = 37 (18.1 bits), Expect = 5.7e-213, Sum P(2) = 5.7e-213
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 124 EETGDDVEGFEYGKADFT 141
E G D +G E+ DFT
Sbjct: 22 ELLGADTQGSEFEFTDFT 39
>UNIPROTKB|E1BEK9 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0044530 "supraspliceosomal complex" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] InterPro:IPR018999
Pfam:PF09416 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0007049 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145
GeneTree:ENSGT00550000074391 OMA:MFYEGSL EMBL:DAAA02019036
IPI:IPI00685259 Ensembl:ENSBTAT00000027868 Uniprot:E1BEK9
Length = 1127
Score = 2023 (717.2 bits), Expect = 5.6e-257, Sum P(2) = 5.6e-257
Identities = 381/543 (70%), Positives = 456/543 (83%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKED--NE---------LRLVPGDELRLRYSG 289
+KESQ++DN+T+RWD+GLNKKR+AYF PK D NE +RL+ GDE+ LRY G
Sbjct: 318 LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKG 377
Query: 290 DAAHPAWQSVGHVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAM 347
D A P W+ +GHVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+
Sbjct: 378 DLA-PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL 436
Query: 348 KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPI 407
KTFAVDETSVSGYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+
Sbjct: 437 KTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL 496
Query: 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467
SLIQGPPGTGKTVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAK
Sbjct: 497 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 556
Query: 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATERE 527
SREA+ SPV L LH Q+R++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE
Sbjct: 557 SREAIDSPVSFLALHNQIRNMDSMP--ELQKLQQLKDETGELSSADEKRYRALKRTAERE 614
Query: 528 ISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQ 587
+ +ADVICCTCVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQ
Sbjct: 615 LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ 674
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPV+MCKKAA+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGV
Sbjct: 675 LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 734
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
T +R G DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G
Sbjct: 735 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 794
Query: 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
P QIG+ITPYEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+N
Sbjct: 795 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 854
Query: 768 EHQ 770
EHQ
Sbjct: 855 EHQ 857
Score = 474 (171.9 bits), Expect = 5.6e-257, Sum P(2) = 5.6e-257
Identities = 96/156 (61%), Positives = 111/156 (71%)
Query: 100 KRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRC 159
+ GA + S TSQ+ +A L+FEE +D Y D HAC YCG+ +PACVV C
Sbjct: 83 QNGAVDDSVAKTSQL---LAELNFEEDEEDT----YYTKDLPVHACSYCGIHDPACVVYC 135
Query: 160 NVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + +KWFCN RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLG
Sbjct: 136 N--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 193
Query: 220 FISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD 255
FI AK +SVVVLLCR+PC + +S KD I WD
Sbjct: 194 FIPAKADSVVVLLCRQPCAS---QSSLKD---INWD 223
Score = 44 (20.5 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 382 RFGAPGLPELNASQVFAVKSVLQRPIS---LIQG 412
RFG PG + N A + V +P S L QG
Sbjct: 1033 RFGLPGPSQTNLPNSQASQDVASQPFSQGALTQG 1066
Score = 37 (18.1 bits), Expect = 9.4e-211, Sum P(2) = 9.4e-211
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 124 EETGDDVEGFEYGKADFT 141
E G D +G E+ DFT
Sbjct: 22 ELLGADTQGSEFEFTDFT 39
>UNIPROTKB|E2RL81 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AAEX03012279 Ensembl:ENSCAFT00000023180 Uniprot:E2RL81
Length = 1130
Score = 2023 (717.2 bits), Expect = 5.6e-257, Sum P(2) = 5.6e-257
Identities = 381/543 (70%), Positives = 456/543 (83%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKED--NE---------LRLVPGDELRLRYSG 289
+KESQ++DN+T+RWD+GLNKKR+AYF PK D NE +RL+ GDE+ LRY G
Sbjct: 321 LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKG 380
Query: 290 DAAHPAWQSVGHVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAM 347
D A P W+ +GHVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+
Sbjct: 381 DLA-PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL 439
Query: 348 KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPI 407
KTFAVDETSVSGYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+
Sbjct: 440 KTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL 499
Query: 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467
SLIQGPPGTGKTVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAK
Sbjct: 500 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 559
Query: 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATERE 527
SREA+ SPV L LH Q+R++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE
Sbjct: 560 SREAIDSPVSFLALHNQIRNMDSMP--ELQKLQQLKDETGELSSADEKRYRALKRTAERE 617
Query: 528 ISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQ 587
+ +ADVICCTCVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQ
Sbjct: 618 LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ 677
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPV+MCKKAA+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGV
Sbjct: 678 LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 737
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
T +R G DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G
Sbjct: 738 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 797
Query: 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
P QIG+ITPYEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+N
Sbjct: 798 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 857
Query: 768 EHQ 770
EHQ
Sbjct: 858 EHQ 860
Score = 474 (171.9 bits), Expect = 5.6e-257, Sum P(2) = 5.6e-257
Identities = 96/156 (61%), Positives = 111/156 (71%)
Query: 100 KRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRC 159
+ GA + S TSQ+ +A L+FEE +D Y D HAC YCG+ +PACVV C
Sbjct: 86 QNGAVDDSVAKTSQL---LAELNFEEDEEDT----YYTKDLPVHACSYCGIHDPACVVYC 138
Query: 160 NVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + +KWFCN RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLG
Sbjct: 139 N--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 196
Query: 220 FISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD 255
FI AK +SVVVLLCR+PC + +S KD I WD
Sbjct: 197 FIPAKADSVVVLLCRQPCAS---QSSLKD---INWD 226
Score = 44 (20.5 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 382 RFGAPGLPELNASQVFAVKSVLQRPIS---LIQG 412
RFG PG + N A + V +P S L QG
Sbjct: 1036 RFGLPGPSQTNLPNSQASQDVASQPFSQGALTQG 1069
Score = 37 (18.1 bits), Expect = 9.4e-211, Sum P(2) = 9.4e-211
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 124 EETGDDVEGFEYGKADFT 141
E G D +G E+ DFT
Sbjct: 22 ELLGADTQGSEFEFTDFT 39
>UNIPROTKB|Q92900 [details] [associations]
symbol:UPF1 "Regulator of nonsense transcripts 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;IMP;TAS] [GO:0006449 "regulation of translational
termination" evidence=IMP;NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000785 "chromatin"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0007049 "cell cycle" evidence=IMP] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005524 GO:GO:0010467 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0003723 GO:GO:0007049
GO:GO:0006406 GO:GO:0000932 eggNOG:COG1112 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145 EMBL:AC003972
GO:GO:0044530 GO:GO:0006449 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL CTD:5976 EMBL:U65533 EMBL:U59323 EMBL:D86988
EMBL:AF074016 EMBL:BC039817 IPI:IPI00034049 IPI:IPI00399170
RefSeq:NP_002902.2 UniGene:Hs.515266 PDB:2GJK PDB:2GK6 PDB:2GK7
PDB:2IYK PDB:2WJV PDB:2WJY PDB:2XZO PDB:2XZP PDBsum:2GJK
PDBsum:2GK6 PDBsum:2GK7 PDBsum:2IYK PDBsum:2WJV PDBsum:2WJY
PDBsum:2XZO PDBsum:2XZP ProteinModelPortal:Q92900 SMR:Q92900
DIP:DIP-29875N IntAct:Q92900 MINT:MINT-5005507 STRING:Q92900
PhosphoSite:Q92900 DMDM:17380291 PaxDb:Q92900 PRIDE:Q92900
Ensembl:ENST00000262803 GeneID:5976 KEGG:hsa:5976 UCSC:uc002nkf.3
UCSC:uc002nkg.3 GeneCards:GC19P018942 HGNC:HGNC:9962 HPA:HPA019587
HPA:HPA020857 MIM:601430 neXtProt:NX_Q92900 PharmGKB:PA34328
HOVERGEN:HBG061556 InParanoid:Q92900 ChiTaRS:UPF1
EvolutionaryTrace:Q92900 GenomeRNAi:5976 NextBio:23259
ArrayExpress:Q92900 Bgee:Q92900 CleanEx:HS_UPF1
Genevestigator:Q92900 GermOnline:ENSG00000005007 Uniprot:Q92900
Length = 1129
Score = 2023 (717.2 bits), Expect = 7.2e-257, Sum P(2) = 7.2e-257
Identities = 381/543 (70%), Positives = 456/543 (83%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKED--NE---------LRLVPGDELRLRYSG 289
+KESQ++DN+T+RWD+GLNKKR+AYF PK D NE +RL+ GDE+ LRY G
Sbjct: 320 LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKG 379
Query: 290 DAAHPAWQSVGHVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAM 347
D A P W+ +GHVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+
Sbjct: 380 DLA-PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL 438
Query: 348 KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPI 407
KTFAVDETSVSGYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+
Sbjct: 439 KTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL 498
Query: 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467
SLIQGPPGTGKTVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAK
Sbjct: 499 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 558
Query: 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATERE 527
SREA+ SPV L LH Q+R++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE
Sbjct: 559 SREAIDSPVSFLALHNQIRNMDSMP--ELQKLQQLKDETGELSSADEKRYRALKRTAERE 616
Query: 528 ISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQ 587
+ +ADVICCTCVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQ
Sbjct: 617 LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ 676
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPV+MCKKAA+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGV
Sbjct: 677 LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 736
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
T +R G DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G
Sbjct: 737 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 796
Query: 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
P QIG+ITPYEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+N
Sbjct: 797 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 856
Query: 768 EHQ 770
EHQ
Sbjct: 857 EHQ 859
Score = 473 (171.6 bits), Expect = 7.2e-257, Sum P(2) = 7.2e-257
Identities = 96/156 (61%), Positives = 111/156 (71%)
Query: 100 KRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRC 159
+ GA + S TSQ+ +A L+FEE +D Y D HAC YCG+ +PACVV C
Sbjct: 85 QNGAVDDSVAKTSQL---LAELNFEEDEEDT----YYTKDLPIHACSYCGIHDPACVVYC 137
Query: 160 NVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + +KWFCN RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLG
Sbjct: 138 N--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 195
Query: 220 FISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD 255
FI AK +SVVVLLCR+PC + +S KD I WD
Sbjct: 196 FIPAKADSVVVLLCRQPCAS---QSSLKD---INWD 225
Score = 44 (20.5 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 382 RFGAPGLPELNASQVFAVKSVLQRPIS---LIQG 412
RFG PG + N A + V +P S L QG
Sbjct: 1035 RFGLPGPSQTNLPNSQASQDVASQPFSQGALTQG 1068
Score = 37 (18.1 bits), Expect = 9.4e-211, Sum P(2) = 9.4e-211
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 124 EETGDDVEGFEYGKADFT 141
E G D +G E+ DFT
Sbjct: 22 ELLGADTQGSEFEFTDFT 39
>UNIPROTKB|E1C0J3 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0035145 "exon-exon
junction complex" evidence=IEA] [GO:0044530 "supraspliceosomal
complex" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AADN02071779 IPI:IPI00571950 Ensembl:ENSGALT00000005101
ArrayExpress:E1C0J3 Uniprot:E1C0J3
Length = 1128
Score = 2022 (716.8 bits), Expect = 1.5e-256, Sum P(2) = 1.5e-256
Identities = 379/543 (69%), Positives = 456/543 (83%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDN-----------ELRLVPGDELRLRYSG 289
+KESQ++DN+T+RWD+GLNKKR+AYF PK D+ ++RL+ GDE+ LRY G
Sbjct: 319 LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNVFCIVGWLLDMRLMQGDEICLRYKG 378
Query: 290 DAAHPAWQSVGHVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAM 347
D A P W+ +GHVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+
Sbjct: 379 DLA-PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL 437
Query: 348 KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPI 407
KTFAVDETSVSGYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+
Sbjct: 438 KTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL 497
Query: 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467
SLIQGPPGTGKTVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAK
Sbjct: 498 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 557
Query: 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATERE 527
SREA+ SPV L LH Q+R++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE
Sbjct: 558 SREAIDSPVSFLALHNQIRNMDSMP--ELQKLQQLKDETGELSSADEKRYRALKRTAERE 615
Query: 528 ISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQ 587
+ +ADVICCTCVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQ
Sbjct: 616 LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ 675
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPV+MCKKAA+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGV
Sbjct: 676 LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 735
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
T +R G DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G
Sbjct: 736 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 795
Query: 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
P QIG+ITPYEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+N
Sbjct: 796 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 855
Query: 768 EHQ 770
EHQ
Sbjct: 856 EHQ 858
Score = 471 (170.9 bits), Expect = 1.5e-256, Sum P(2) = 1.5e-256
Identities = 95/156 (60%), Positives = 111/156 (71%)
Query: 100 KRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRC 159
+ GA + + TSQ+ +A L+FEE +D Y D HAC YCG+ +PACVV C
Sbjct: 84 QNGAVDDNVAKTSQL---LAELNFEEDEEDT----YYTKDLPVHACSYCGIHDPACVVYC 136
Query: 160 NVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + +KWFCN RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLG
Sbjct: 137 N--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 194
Query: 220 FISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD 255
FI AK +SVVVLLCR+PC + +S KD I WD
Sbjct: 195 FIPAKADSVVVLLCRQPCAS---QSSLKD---INWD 224
Score = 53 (23.7 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 382 RFGAPGLPELNASQVFAVKSVLQRPISLIQGP 413
RFG PG + N A + V+ +P S QGP
Sbjct: 1034 RFGIPGTSQSNLPNSQASQDVVSQPFS--QGP 1063
Score = 37 (18.1 bits), Expect = 1.2e-210, Sum P(2) = 1.2e-210
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 124 EETGDDVEGFEYGKADFT 141
E G D +G E+ DFT
Sbjct: 22 ELLGADTQGSEFEFTDFT 39
>MGI|MGI:107995 [details] [associations]
symbol:Upf1 "UPF1 regulator of nonsense transcripts homolog
(yeast)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000785 "chromatin" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006449 "regulation of
translational termination" evidence=ISO] [GO:0007049 "cell cycle"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=ISO] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=ISO] InterPro:IPR018999 Pfam:PF09416 MGI:MGI:107995
GO:GO:0005524 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0000785
GO:GO:0003682 GO:GO:0003723 GO:GO:0007049 GO:GO:0000932
eggNOG:COG1112 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GO:GO:0006449 GeneTree:ENSGT00550000074391
HOGENOM:HOG000205990 KO:K14326 OMA:MFYEGSL CTD:5976
HOVERGEN:HBG061556 ChiTaRS:UPF1 EMBL:AF322655 EMBL:AY597039
EMBL:AY597038 EMBL:AK148196 EMBL:BC030916 EMBL:BC052149
EMBL:BC056442 EMBL:AF182947 IPI:IPI00420949 IPI:IPI00850525
RefSeq:NP_001116301.1 RefSeq:NP_109605.2 UniGene:Mm.390048
ProteinModelPortal:Q9EPU0 SMR:Q9EPU0 STRING:Q9EPU0
PhosphoSite:Q9EPU0 PaxDb:Q9EPU0 PRIDE:Q9EPU0
Ensembl:ENSMUST00000075666 GeneID:19704 KEGG:mmu:19704
UCSC:uc009mab.2 UCSC:uc012gfa.1 InParanoid:Q9EPU0 OrthoDB:EOG4P8FH8
NextBio:297078 Bgee:Q9EPU0 Genevestigator:Q9EPU0
GermOnline:ENSMUSG00000058301 Uniprot:Q9EPU0
Length = 1124
Score = 2019 (715.8 bits), Expect = 1.5e-256, Sum P(2) = 1.5e-256
Identities = 380/543 (69%), Positives = 456/543 (83%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKED--NE---------LRLVPGDELRLRYSG 289
+KESQ++DN+T+RWD+GLNKKR+A+F PK D NE +RL+ GDE+ LRY G
Sbjct: 315 LKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKG 374
Query: 290 DAAHPAWQSVGHVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAM 347
D A P W+ +GHVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+
Sbjct: 375 DLA-PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL 433
Query: 348 KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPI 407
KTFAVDETSVSGYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+
Sbjct: 434 KTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL 493
Query: 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467
SLIQGPPGTGKTVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAK
Sbjct: 494 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 553
Query: 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATERE 527
SREA+ SPV L LH Q+R++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE
Sbjct: 554 SREAIDSPVSFLALHNQIRNMDSMP--ELQKLQQLKDETGELSSADEKRYRALKRTAERE 611
Query: 528 ISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQ 587
+ +ADVICCTCVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQ
Sbjct: 612 LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ 671
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPV+MCKKAA+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGV
Sbjct: 672 LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 731
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
T +R G DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G
Sbjct: 732 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 791
Query: 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
P QIG+ITPYEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+N
Sbjct: 792 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 851
Query: 768 EHQ 770
EHQ
Sbjct: 852 EHQ 854
Score = 474 (171.9 bits), Expect = 1.5e-256, Sum P(2) = 1.5e-256
Identities = 96/156 (61%), Positives = 111/156 (71%)
Query: 100 KRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRC 159
+ GA + S TSQ+ +A L+FEE +D Y D HAC YCG+ +PACVV C
Sbjct: 80 QNGAVDDSVAKTSQL---LAELNFEEDEEDT----YYTKDLPVHACSYCGIHDPACVVYC 132
Query: 160 NVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + +KWFCN RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLG
Sbjct: 133 N--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 190
Query: 220 FISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD 255
FI AK +SVVVLLCR+PC + +S KD I WD
Sbjct: 191 FIPAKADSVVVLLCRQPCAS---QSSLKD---INWD 220
Score = 38 (18.4 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 382 RFGAPGLPELNASQVFAVKSVLQRPIS---LIQG 412
RFG PG + A + V +P S L QG
Sbjct: 1030 RFGLPGPSQTTLPNSQASQDVASQPFSQGALTQG 1063
Score = 37 (18.1 bits), Expect = 2.5e-210, Sum P(2) = 2.5e-210
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 124 EETGDDVEGFEYGKADFT 141
E G D +G E+ DFT
Sbjct: 22 ELLGADTQGSEFEFTDFT 39
>UNIPROTKB|G4ND47 [details] [associations]
symbol:MGG_00976 "Regulator-nonsense transcripts 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 EMBL:CM001235 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
KO:K14326 RefSeq:XP_003717973.1 ProteinModelPortal:G4ND47
SMR:G4ND47 EnsemblFungi:MGG_00976T0 GeneID:2674784
KEGG:mgr:MGG_00976 Uniprot:G4ND47
Length = 1105
Score = 1833 (650.3 bits), Expect = 5.8e-233, Sum P(2) = 5.8e-233
Identities = 355/536 (66%), Positives = 422/536 (78%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KE+QS+D + +RWD GLN K +A F+ PK E +++L GDE+RL+Y G+ P W+ V
Sbjct: 297 LKEAQSEDGLVVRWDYGLNNKHLASFILPKIESGDVKLAVGDEMRLKYKGEL-RPQWEGV 355
Query: 300 GHVIKL--TAQEEVALELRAS---QGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDE 354
G+V+K+ +EV LELR S + VP + H FS D+VWK+TS+DRMQ AM+ FAVDE
Sbjct: 356 GYVVKIPNNQSDEVTLELRKSGNDKSVPTECTHNFSADYVWKATSYDRMQLAMRNFAVDE 415
Query: 355 TSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPP 414
SVSGYI+H LLGHEV V +R T+P++F APGLP+LN SQ+ A+K+VL P+SLIQGPP
Sbjct: 416 MSVSGYIFHKLLGHEVAVAPMRTTMPKKFTAPGLPDLNGSQISAIKAVLSTPLSLIQGPP 475
Query: 415 GTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSS 474
GTGKTVTSA I+YH+AK QVLVCAPSNVAVDQL E++ TGLKVVRL AKSRE V S
Sbjct: 476 GTGKTVTSATIIYHLAKMNGSQVLVCAPSNVAVDQLCERVHRTGLKVVRLTAKSREDVES 535
Query: 475 PVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADV 534
V L LH QVR DT+ EL KLQQLK E GELSS DEKK+K L +A EREI +ADV
Sbjct: 536 SVSFLALHEQVRMNDTNP--ELAKLQQLKSELGELSSQDEKKFKQLTKAAEREILSNADV 593
Query: 535 ICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMC 594
+CCTCVGAGDPRLA +FR VLIDESTQ+ EPEC+IPLVLG KQVVLVGDH QLGPVIM
Sbjct: 594 VCCTCVGAGDPRLAKLKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMN 653
Query: 595 KKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQS 654
KKAA+AGL QSLFERLV LGL PIRL VQYRMHP LSEFPSN FYEG+LQNGVTI +R
Sbjct: 654 KKAAKAGLNQSLFERLVKLGLTPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTIQQRLR 713
Query: 655 SGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 714
+DFPWPV + PM F+ +G EEISASGTSYLNRTEA+NVEK+VT F ++GV P IGV
Sbjct: 714 RDVDFPWPVADMPMMFWSNLGNEEISASGTSYLNRTEASNVEKLVTRFFKAGVKPGDIGV 773
Query: 715 ITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
+TPYEGQR+YIV+ M G +++ YKE+EVASVD+FQGREKD+I+LSCVRSNE Q
Sbjct: 774 VTPYEGQRSYIVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIVLSCVRSNESQ 829
Score = 437 (158.9 bits), Expect = 5.8e-233, Sum P(2) = 5.8e-233
Identities = 91/187 (48%), Positives = 121/187 (64%)
Query: 94 ATSSPSKRGANNSSNTSTSQI-VEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSN 152
A ++ + S + + V+GM GLS + ++ E EHAC YCG+ +
Sbjct: 55 AADDDETEALDDDDDESLASVPVDGMRGLSLKAAEEEKE--------LPEHACAYCGIHS 106
Query: 153 PACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGC 212
PACVV+C C+KWFCNSRGNTS SHI+NHLVRA+HKEV LH +S LG+TILECYNCG
Sbjct: 107 PACVVKCL--GCKKWFCNSRGNTSSSHIINHLVRARHKEVQLHPESTLGDTILECYNCGV 164
Query: 213 RNVFLLGFISAKTESVVVLLCREPCL-NMMKESQSKDNVTIRWDIGLNKKR-VAYFV-FP 269
RNVFLLGFI AK+++VVVLLCR+PC N + S D RW L+++ +++ V P
Sbjct: 165 RNVFLLGFIPAKSDTVVVLLCRQPCAANPSSKDMSWD--ISRWSPLLDERNFLSWLVAVP 222
Query: 270 KEDNELR 276
+ +LR
Sbjct: 223 TDAEQLR 229
>FB|FBgn0030354 [details] [associations]
symbol:Upf1 "Upf1" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS;IMP;NAS] [GO:0005737 "cytoplasm"
evidence=IEA;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0035195 "gene silencing by miRNA" evidence=IMP] [GO:0071456
"cellular response to hypoxia" evidence=IMP] [GO:0035145 "exon-exon
junction complex" evidence=IDA] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0071456
GO:GO:0004386 eggNOG:COG1112 GeneTree:ENSGT00550000074391 KO:K14326
OMA:MFYEGSL EMBL:AY061379 RefSeq:NP_572767.1 UniGene:Dm.3617
ProteinModelPortal:Q9VYS3 SMR:Q9VYS3 STRING:Q9VYS3 PaxDb:Q9VYS3
PRIDE:Q9VYS3 EnsemblMetazoa:FBtr0073596 GeneID:32153
KEGG:dme:Dmel_CG1559 UCSC:CG1559-RA CTD:5976 FlyBase:FBgn0030354
InParanoid:Q9VYS3 OrthoDB:EOG476HF1 PhylomeDB:Q9VYS3
GenomeRNAi:32153 NextBio:777131 Bgee:Q9VYS3 GermOnline:CG1559
Uniprot:Q9VYS3
Length = 1180
Score = 1801 (639.0 bits), Expect = 4.7e-231, Sum P(2) = 4.7e-231
Identities = 343/537 (63%), Positives = 422/537 (78%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVG 300
+KES +++N+ +RWD+GLNKK +AYF K D++++L+ GDELRL Y G+ +P W +G
Sbjct: 297 LKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNP-WSEIG 355
Query: 301 HVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVS 358
HVIK+ ++V LEL++S PV F+VDF+WK TSFDRM A+ FA+D SVS
Sbjct: 356 HVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFDRMTRALCKFAIDRNSVS 415
Query: 359 GYIYHHLLGH-----EVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGP 413
+IY LLGH EV + R P+ F AP LP+LN SQV+AVK LQRP+SLIQGP
Sbjct: 416 NFIYSRLLGHGRADSNDEV-LFRGPQPKLFSAPHLPDLNRSQVYAVKHALQRPLSLIQGP 474
Query: 414 PGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVS 473
PGTGKTVTSA IVY + K G VLVCAPSN AVDQL EKI T LKVVR+CAKSREA+
Sbjct: 475 PGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAID 534
Query: 474 SPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSAD 533
SPV L LH Q+R+++T+ SEL KLQQLKDE GELSS+DEK+Y+ LKRA E ++ ++AD
Sbjct: 535 SPVSFLALHNQIRNMETN--SELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAAD 592
Query: 534 VICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIM 593
VICCTCVGAGD RL+ +F +LIDES Q+TEPEC++P+VLGAKQ++LVGDHCQLGPV+M
Sbjct: 593 VICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVM 652
Query: 594 CKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQ 653
CKKAARAGL+QSLFERLV+LG++P RL+VQYRMHP LS+FPSN FYEG+LQNGV +R+
Sbjct: 653 CKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRR 712
Query: 654 SSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIG 713
+DFPWP P RPMFF V GQEEI+ SGTS+LNRTEAANVEKI T FL++G+ P QIG
Sbjct: 713 LK-LDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIG 771
Query: 714 VITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
+ITPYEGQRAY+V YM G+L +LY+EIE+ASVD+FQGREKD II+SCVRSNE Q
Sbjct: 772 IITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQ 828
Score = 451 (163.8 bits), Expect = 4.7e-231, Sum P(2) = 4.7e-231
Identities = 86/147 (58%), Positives = 107/147 (72%)
Query: 99 SKRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVR 158
++R + S+ + I +A L FEE DD G Y K + HAC+YCG+ +PA VV
Sbjct: 56 AQRCSAGDSHPRLASITNDLADLQFEEE-DDEPGSSYVK-ELPPHACKYCGIHDPATVVM 113
Query: 159 CNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLL 218
CN +CRKWFCN RG+TSGSHI+NHLVRAKH+EV LH + PLGETILECY+CG RNVF+L
Sbjct: 114 CN--NCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVL 171
Query: 219 GFISAKTESVVVLLCREPCL--NMMKE 243
GFI AK +SVVVLLCR+PC N +K+
Sbjct: 172 GFIPAKADSVVVLLCRQPCAAQNSLKD 198
Score = 37 (18.1 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAY 724
Q+ +ISA+ + L N+E + G+ V+ YE Y
Sbjct: 228 QLRARQISAAQINKLEELWKENIEATFQDLEKPGIDSEPAHVLLRYEDGYQY 279
>ASPGD|ASPL0000056713 [details] [associations]
symbol:AN0646 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001308 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
HOGENOM:HOG000205990 OMA:MFYEGSL ProteinModelPortal:C8VS08
EnsemblFungi:CADANIAT00002030 Uniprot:C8VS08
Length = 1077
Score = 1835 (651.0 bits), Expect = 1.8e-229, Sum P(2) = 1.8e-229
Identities = 360/536 (67%), Positives = 424/536 (79%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KESQS+D + +RWD+GLN K +A F+ PK E +++L GDE+RL+Y+G+ P W+ V
Sbjct: 269 LKESQSQDGLIVRWDLGLNNKHLASFILPKLELGDVKLAVGDEMRLKYTGEL-RPKWEGV 327
Query: 300 GHVIKL--TAQEEVALELRAS---QGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDE 354
G+VIK+ +EV +ELRA + VP + H F+ D+VWKSTSFDRMQ AMKTFAVDE
Sbjct: 328 GYVIKIPNNQSDEVTIELRAKGDHKSVPTECTHNFTADYVWKSTSFDRMQLAMKTFAVDE 387
Query: 355 TSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPP 414
SVSGYI+H LLGHEV ++ +P++F PGLPELN SQ+ AVKSVLQRP+SLIQGPP
Sbjct: 388 MSVSGYIFHRLLGHEVAAAPMKTQMPKKFSVPGLPELNGSQINAVKSVLQRPLSLIQGPP 447
Query: 415 GTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSS 474
GTGKTVTSA I+YH+AK GQVLVCAPSNVAVDQL E+I TGLK VR+ AKSRE V S
Sbjct: 448 GTGKTVTSATIIYHLAKLNGGQVLVCAPSNVAVDQLCERIHRTGLKTVRVTAKSREDVES 507
Query: 475 PVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADV 534
PV L+LH QVR D++ EL KL QLK E GELSS DEK+ K L RA EREI +ADV
Sbjct: 508 PVGFLSLHEQVRLNDSN--IELIKLNQLKSELGELSSQDEKRLKQLTRAAEREILNNADV 565
Query: 535 ICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMC 594
ICCTCVGAGDPRLA +FR VLIDESTQ+ EPEC+IPLVLG KQVVLVGDH QLGPVIM
Sbjct: 566 ICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMN 625
Query: 595 KKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQS 654
KKAA+AGL QSLFERLV+LG PIRL VQYRMHP LSEFPSN FYEG+LQNG+T +R
Sbjct: 626 KKAAKAGLNQSLFERLVILGCSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGITSFDRLR 685
Query: 655 SGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 714
+DFPWP+ + PM F+ +G EEISASGTSYLNRTEAANVEKIVT F ++GV P IG+
Sbjct: 686 REVDFPWPILDSPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVQPKDIGI 745
Query: 715 ITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
ITPYEGQR+YIV+ M G +++ YKEIEVASVD+FQGREKD+IILSCVRSN+HQ
Sbjct: 746 ITPYEGQRSYIVSSMQATGTFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQ 801
Score = 402 (146.6 bits), Expect = 1.8e-229, Sum P(2) = 1.8e-229
Identities = 76/140 (54%), Positives = 100/140 (71%)
Query: 139 DFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDS 198
+ HAC YCG+ NP+ VV+C +C KWFC++RGNTS SHIVNHLVRA+HKEV LH +S
Sbjct: 65 ELAPHACAYCGIHNPSSVVKCL--ACSKWFCSARGNTSSSHIVNHLVRARHKEVQLHPES 122
Query: 199 PLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWDIGL 258
LG+T+LECYNCG +NVFLLGFI AK+++VVVLLCR+PC M S+ + T RW +
Sbjct: 123 SLGDTVLECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCA-AMPSSKDMNWDTSRWQPLI 181
Query: 259 NKKR-VAYFVF-PKEDNELR 276
+ + + V P + +LR
Sbjct: 182 EDRSFLTWLVAAPSDQEQLR 201
>POMBASE|SPAC16C9.06c [details] [associations]
symbol:upf1 "ATP-dependent RNA helicase Upf1"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0002184 "cytoplasmic translational
termination" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006415
"translational termination" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 PomBase:SPAC16C9.06c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0004004 GO:GO:0002184 HOGENOM:HOG000205990
KO:K14326 OMA:MFYEGSL OrthoDB:EOG405W86 PIR:S62476
RefSeq:NP_593080.1 ProteinModelPortal:Q09820 SMR:Q09820
STRING:Q09820 PRIDE:Q09820 EnsemblFungi:SPAC16C9.06c.1
GeneID:2542327 KEGG:spo:SPAC16C9.06c NextBio:20803388
Uniprot:Q09820
Length = 925
Score = 1688 (599.3 bits), Expect = 9.6e-209, Sum P(2) = 9.6e-209
Identities = 324/539 (60%), Positives = 413/539 (76%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KESQ++ +V +RWD +NK+ A+F+ PK E E+RL GDE++L Y G+ P W S
Sbjct: 241 LKESQTQKDVVVRWDQAINKRYTAWFLLPKLESGEIRLAIGDEMKLTYEGELRAP-WSST 299
Query: 300 GHVIKL--TAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSV 357
G+VIK+ +EV LEL+ S VP++ H FSVD+VWKSTSFDRMQ A++ FA D + +
Sbjct: 300 GYVIKIPNNVSDEVGLELKRSDKVPIECTHNFSVDYVWKSTSFDRMQTALRLFATDGSRL 359
Query: 358 SGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTG 417
S ++YH LLGH++ ++ LP P LP+LNASQ AV++VL +P+SLIQGPPGTG
Sbjct: 360 SSFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTG 419
Query: 418 KTVTSAAIVYHMA------KQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREA 471
KTVTSA++VYH+A ++ VLVCAPSNVAVDQLAEKI TGL+VVR+ AKSRE
Sbjct: 420 KTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSRED 479
Query: 472 VSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQS 531
+ S V L+LH Q+++ + EL +L +L+ E ELS DEKK + L A E+E+ ++
Sbjct: 480 IESSVSFLSLHEQIKNYKFNP--ELQRLLKLRSENNELSIQDEKKLRILVAAAEKELLRA 537
Query: 532 ADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPV 591
A VICCTCVGAGD R++ ++FR VLIDE+TQA+EPEC+IPLVLGAKQVVLVGDH QLGPV
Sbjct: 538 AHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPV 597
Query: 592 IMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINE 651
+M KK A A L+QSLFERL++LG P RL VQYRMHP LSEFPSN+FYEGTLQNGVT +E
Sbjct: 598 VMNKKVALASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSE 657
Query: 652 RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQ 711
R + +DFPW P+ P+ FY GQEE+SASGTS+LNRTEA+ EKIVTTFLRS V+P Q
Sbjct: 658 RIARHVDFPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ 717
Query: 712 IGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
IG++TPY+GQR+YIV YM NG++++ LYK +EVASVD+FQGREKD+IILSCVRS+EHQ
Sbjct: 718 IGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQ 776
Score = 353 (129.3 bits), Expect = 9.6e-209, Sum P(2) = 9.6e-209
Identities = 65/142 (45%), Positives = 93/142 (65%)
Query: 140 FTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSP 199
++E C YC + NP +++C C KWFCN RG + SHI++HLVRA+HK+V LH S
Sbjct: 39 YSEEHCAYCHIKNPNSILKCL--HCNKWFCNVRGKSGASHIISHLVRARHKQVALHSHSS 96
Query: 200 LGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD-IGL 258
L +T+LECYNCG RNVFLLGFI AK ++VVVLLCR+PC ++T +W I
Sbjct: 97 LSDTVLECYNCGTRNVFLLGFIPAKAKTVVVLLCRQPCARASIAKDMNWDLT-QWQPIIS 155
Query: 259 NKKRVAYFVFPKEDNELRL-VP 279
+++ + + + P + E +L +P
Sbjct: 156 DRQFLPWLITPPSEEEQKLAIP 177
>SGD|S000004685 [details] [associations]
symbol:NAM7 "ATP-dependent RNA helicase of the SFI
superfamily" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IGI;IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016567 "protein ubiquitination"
evidence=IMP;IDA;IPI] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005844 "polysome" evidence=TAS] [GO:0003676 "nucleic acid
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;TAS]
[GO:0006449 "regulation of translational termination" evidence=TAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006452 "translational frameshifting" evidence=IMP] [GO:0008186
"RNA-dependent ATPase activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR018999 Pfam:PF09416 SMART:SM00382 SGD:S000004685
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003676 GO:GO:0016567
GO:GO:0030466 EMBL:BK006946 EMBL:Z49259 GO:GO:0005844 GO:GO:0008298
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0004004
GO:GO:0070478 GO:GO:0006449 GeneTree:ENSGT00550000074391
EMBL:X62394 EMBL:M76659 PIR:S23408 RefSeq:NP_013797.1 PDB:2XZL
PDBsum:2XZL ProteinModelPortal:P30771 SMR:P30771 DIP:DIP-2373N
IntAct:P30771 MINT:MINT-492322 STRING:P30771 PaxDb:P30771
PeptideAtlas:P30771 EnsemblFungi:YMR080C GeneID:855104
KEGG:sce:YMR080C CYGD:YMR080c HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL OrthoDB:EOG405W86 EvolutionaryTrace:P30771
NextBio:978431 Genevestigator:P30771 GermOnline:YMR080C
Uniprot:P30771
Length = 971
Score = 1564 (555.6 bits), Expect = 4.6e-198, Sum P(2) = 4.6e-198
Identities = 314/534 (58%), Positives = 391/534 (73%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KESQ+ +++++ W + LN + +A F E NEL++ GDE+ L YSG HP W+
Sbjct: 256 LKESQALEHISVSWSLALNNRHLASFTLSTFESNELKVAIGDEMILWYSG-MQHPDWEGR 314
Query: 300 GHVIKL--TAQEEVALELRASQGVP-VDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETS 356
G++++L + Q+ LEL+ S+ P + GF+ +F+WK TS+DRMQ A+K FA+D+ S
Sbjct: 315 GYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKS 374
Query: 357 VSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGT 416
+SGY+Y+ +LGH+V LP+ F P +LN+SQ AV VLQRP+SLIQGPPGT
Sbjct: 375 ISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGT 434
Query: 417 GKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 476
GKTVTSA IVYH++K + ++LVCAPSNVAVD LA K+ GLKVVRL AKSRE V S V
Sbjct: 435 GKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSV 494
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
+L LH V K EL L +LKDE GELS+SD K++ L R TE EI ADV+C
Sbjct: 495 SNLALHNLVGR---GAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVC 551
Query: 537 CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKK 596
CTCVGAGD RL + +FR VLIDESTQA+EPECLIP+V GAKQV+LVGDH QLGPVI+ +K
Sbjct: 552 CTCVGAGDKRL-DTKFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERK 610
Query: 597 AARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
AA AGL QSLFERL+ LG PIRL+VQYRM+P LSEFPSN FYEG+LQNGVTI +R
Sbjct: 611 AADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPN 670
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVIT 716
FPWP+ PM F+ G+EEISA+GTS+LNR EA N E+I+T R GV P QIGVIT
Sbjct: 671 SKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVIT 730
Query: 717 PYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
PYEGQRAYI+ YM NG+L + LY ++EVASVD+FQGREKDYIILSCVR+NE Q
Sbjct: 731 PYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQ 784
Score = 376 (137.4 bits), Expect = 4.6e-198, Sum P(2) = 4.6e-198
Identities = 76/185 (41%), Positives = 114/185 (61%)
Query: 95 TSSPSKRGANNSSNTSTSQIVEG-MAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNP 153
++SPS ++ +++ + + + FEE GF A ++++C YCG+ +
Sbjct: 13 SNSPSDVNVQPATQLNSTLVEDDDVDNQLFEEAQVTETGFRSPSA--SDNSCAYCGIDSA 70
Query: 154 ACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCR 213
CV++CN SC+KWFCN++ TS SHIVNHLV + H V LH DS LG+T+LECYNCG +
Sbjct: 71 KCVIKCN--SCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRK 128
Query: 214 NVFLLGFISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWDIGLNKKRVAYFVF--PKE 271
NVFLLGF+SAK+E+VVVLLCR PC + D +W + +++ +V P E
Sbjct: 129 NVFLLGFVSAKSEAVVVLLCRIPCAQTKNANWDTD----QWQPLIEDRQLLSWVAEQPTE 184
Query: 272 DNELR 276
+ +L+
Sbjct: 185 EEKLK 189
>CGD|CAL0003666 [details] [associations]
symbol:NAM7 species:5476 "Candida albicans" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
CGD:CAL0003666 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 eggNOG:COG1112
InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000063
EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1 RefSeq:XP_716838.1
ProteinModelPortal:Q5A507 SMR:Q5A507 STRING:Q5A507 GeneID:3641489
GeneID:3641540 KEGG:cal:CaO19.8554 KEGG:cal:CaO19.939
Uniprot:Q5A507
Length = 1019
Score = 1555 (552.4 bits), Expect = 2.3e-196, Sum P(2) = 2.3e-196
Identities = 311/536 (58%), Positives = 391/536 (72%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KESQ+ +++ ++W +GLN + +A F E ++L++ GDE+ LRYSG+ P W+
Sbjct: 288 LKESQALEHIQVKWALGLNNRHLASFTLSTFETSDLKVAVGDEIILRYSGNQGEP-WEGH 346
Query: 300 GHVIKL--TAQEEVALELRASQGVP-VDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETS 356
G++++L QEE LEL S+ +P + F+ +FVWK TS+DRMQ AMK FA DE S
Sbjct: 347 GYILRLPNAYQEEFTLELNPSKIIPPTQLTTDFTAEFVWKGTSYDRMQQAMKDFATDEES 406
Query: 357 VSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGT 416
VS +IYH LLGHEV LP++F P L ELN SQ AV++VLQRP+SLIQGPPGT
Sbjct: 407 VSSFIYHKLLGHEVLPIEFDIDLPKKFSHPKLTELNVSQTNAVRTVLQRPLSLIQGPPGT 466
Query: 417 GKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 476
GKTVTSA I+YH++K + ++LVCAPSNVAVD LA K+ GL VVRL AKSRE V S V
Sbjct: 467 GKTVTSATIIYHLSKLNKQKILVCAPSNVAVDHLAAKLDLLGLNVVRLTAKSREDVESSV 526
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
HL LH V +++ K EL KL +LK++ GELS +D Y L R++E ++ A+V+C
Sbjct: 527 SHLALHNLV---NSNAKGELKKLIKLKNQVGELSVADTNNYLKLSRSSEMKVLNKAEVVC 583
Query: 537 CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKK 596
CTCVGA D RL+ FRF+ VLIDESTQA+EPE LIP+V GAKQV+LVGDH QLGPVI+ KK
Sbjct: 584 CTCVGAADRRLSQFRFKTVLIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILDKK 643
Query: 597 AARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
AA AGL QSLFERLV LG PIRL+VQYRMHP LSEFPSN FYEG+LQNGVT ++R
Sbjct: 644 AADAGLKQSLFERLVFLGHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEE 703
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVIT 716
FPWPV + PM F+ G+EE+SASG SYLNR EA NVEKI+T + G+ P QIGVIT
Sbjct: 704 STFPWPVIDTPMMFWANYGREELSASGNSYLNRVEAMNVEKIITKLFKDGIKPEQIGVIT 763
Query: 717 PYEGQRAYIVNYMSRNGAL--RQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
PYEGQRAY+V +MS N L ++ Y +E+ SVD+FQGREKD+IILSCVR+N+ Q
Sbjct: 764 PYEGQRAYLVQFMSVNSTLLDKRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQ 819
Score = 369 (135.0 bits), Expect = 2.3e-196, Sum P(2) = 2.3e-196
Identities = 72/147 (48%), Positives = 98/147 (66%)
Query: 109 TSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWF 168
TS I + + + +T +D E Y EHAC YCG+ NP V++CN +C KWF
Sbjct: 64 TSDHPIEQAVHSYATHDTDEDSEQ-HY------EHACAYCGIHNPNSVIKCN--TCNKWF 114
Query: 169 CNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESV 228
CN++ N+S SHIV HL+ ++H +V LH++S LG+T LECYNCG +NVF+LGF+SAK ESV
Sbjct: 115 CNAKTNSSSSHIVTHLIMSRHNQVSLHEESELGDTTLECYNCGNKNVFILGFVSAKQESV 174
Query: 229 VVLLCREPCLNMMKESQSKDNVTIRWD 255
VV+LCR PC ++SKD + WD
Sbjct: 175 VVILCRLPC------ARSKD---VNWD 192
>UNIPROTKB|Q5A507 [details] [associations]
symbol:NAM7 "Putative uncharacterized protein NAM7"
species:237561 "Candida albicans SC5314" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 CGD:CAL0003666 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
EMBL:AACQ01000063 EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1
RefSeq:XP_716838.1 ProteinModelPortal:Q5A507 SMR:Q5A507
STRING:Q5A507 GeneID:3641489 GeneID:3641540 KEGG:cal:CaO19.8554
KEGG:cal:CaO19.939 Uniprot:Q5A507
Length = 1019
Score = 1555 (552.4 bits), Expect = 2.3e-196, Sum P(2) = 2.3e-196
Identities = 311/536 (58%), Positives = 391/536 (72%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KESQ+ +++ ++W +GLN + +A F E ++L++ GDE+ LRYSG+ P W+
Sbjct: 288 LKESQALEHIQVKWALGLNNRHLASFTLSTFETSDLKVAVGDEIILRYSGNQGEP-WEGH 346
Query: 300 GHVIKL--TAQEEVALELRASQGVP-VDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETS 356
G++++L QEE LEL S+ +P + F+ +FVWK TS+DRMQ AMK FA DE S
Sbjct: 347 GYILRLPNAYQEEFTLELNPSKIIPPTQLTTDFTAEFVWKGTSYDRMQQAMKDFATDEES 406
Query: 357 VSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGT 416
VS +IYH LLGHEV LP++F P L ELN SQ AV++VLQRP+SLIQGPPGT
Sbjct: 407 VSSFIYHKLLGHEVLPIEFDIDLPKKFSHPKLTELNVSQTNAVRTVLQRPLSLIQGPPGT 466
Query: 417 GKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 476
GKTVTSA I+YH++K + ++LVCAPSNVAVD LA K+ GL VVRL AKSRE V S V
Sbjct: 467 GKTVTSATIIYHLSKLNKQKILVCAPSNVAVDHLAAKLDLLGLNVVRLTAKSREDVESSV 526
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
HL LH V +++ K EL KL +LK++ GELS +D Y L R++E ++ A+V+C
Sbjct: 527 SHLALHNLV---NSNAKGELKKLIKLKNQVGELSVADTNNYLKLSRSSEMKVLNKAEVVC 583
Query: 537 CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKK 596
CTCVGA D RL+ FRF+ VLIDESTQA+EPE LIP+V GAKQV+LVGDH QLGPVI+ KK
Sbjct: 584 CTCVGAADRRLSQFRFKTVLIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILDKK 643
Query: 597 AARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
AA AGL QSLFERLV LG PIRL+VQYRMHP LSEFPSN FYEG+LQNGVT ++R
Sbjct: 644 AADAGLKQSLFERLVFLGHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEE 703
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVIT 716
FPWPV + PM F+ G+EE+SASG SYLNR EA NVEKI+T + G+ P QIGVIT
Sbjct: 704 STFPWPVIDTPMMFWANYGREELSASGNSYLNRVEAMNVEKIITKLFKDGIKPEQIGVIT 763
Query: 717 PYEGQRAYIVNYMSRNGAL--RQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
PYEGQRAY+V +MS N L ++ Y +E+ SVD+FQGREKD+IILSCVR+N+ Q
Sbjct: 764 PYEGQRAYLVQFMSVNSTLLDKRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQ 819
Score = 369 (135.0 bits), Expect = 2.3e-196, Sum P(2) = 2.3e-196
Identities = 72/147 (48%), Positives = 98/147 (66%)
Query: 109 TSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWF 168
TS I + + + +T +D E Y EHAC YCG+ NP V++CN +C KWF
Sbjct: 64 TSDHPIEQAVHSYATHDTDEDSEQ-HY------EHACAYCGIHNPNSVIKCN--TCNKWF 114
Query: 169 CNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESV 228
CN++ N+S SHIV HL+ ++H +V LH++S LG+T LECYNCG +NVF+LGF+SAK ESV
Sbjct: 115 CNAKTNSSSSHIVTHLIMSRHNQVSLHEESELGDTTLECYNCGNKNVFILGFVSAKQESV 174
Query: 229 VVLLCREPCLNMMKESQSKDNVTIRWD 255
VV+LCR PC ++SKD + WD
Sbjct: 175 VVILCRLPC------ARSKD---VNWD 192
>WB|WBGene00004880 [details] [associations]
symbol:smg-2 species:6239 "Caenorhabditis elegans"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IGI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA;TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030538
"embryonic genitalia morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0051721 "protein phosphatase 2A
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
EMBL:AF074017 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016246 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0040035 eggNOG:COG1112
GO:GO:0004004 GO:GO:0030538 HOGENOM:HOG000205990 KO:K14326
EMBL:FO081800 PIR:T43280 RefSeq:NP_490829.1
ProteinModelPortal:O76512 SMR:O76512 MINT:MINT-255670 STRING:O76512
PaxDb:O76512 GeneID:171696 KEGG:cel:CELE_Y48G8AL.6 UCSC:Y48G8AL.6
CTD:171696 WormBase:Y48G8AL.6 InParanoid:O76512 NextBio:872341
Uniprot:O76512
Length = 1069
Score = 1542 (547.9 bits), Expect = 7.7e-196, Sum P(2) = 7.7e-196
Identities = 303/532 (56%), Positives = 389/532 (73%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KES S+ T+RW+ GL + +A+F P+ D ++L GDELRL++S W +
Sbjct: 292 VKESASQAVGTVRWEQGLRQSVLAFFHLPQFADGVMKLAKGDELRLKHSQTVDGSEWTKI 351
Query: 300 GHVIKLTAQ--EEVALELRASQGVPV-DINHGFSVDFVWKSTSFDRMQGAMKTFAVDETS 356
G V K+ +EV +E+R + V + F+VD VW +T+F+R A+ D +
Sbjct: 352 GSVFKIPDNHGDEVGIEIRGAVDKSVMESRIMFTVDVVWNATTFERQYKALAALLNDSKA 411
Query: 357 VSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGT 416
+S Y+Y LLGH E M++ LPRR GLPELN+SQ+ AVK VL RP+SLIQGPPGT
Sbjct: 412 ISPYLYQKLLGHPAEEMMLKFDLPRRLSVAGLPELNSSQMQAVKQVLTRPLSLIQGPPGT 471
Query: 417 GKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 476
GKTV SA IVYH+ ++ +G VLVC+PSN+AVD LAEKI TGLKVVRLCA+SRE + V
Sbjct: 472 GKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHLAEKIHKTGLKVVRLCARSREHSETTV 531
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
+LTL +Q++ + +E L KL QLKDE GEL D+ +Y LKR E E+ +ADVIC
Sbjct: 532 PYLTLQHQLKVMGGAE---LQKLIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVIC 588
Query: 537 CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKK 596
CTC A D RL+ R R VLIDESTQATEPE L+ ++ G +Q+VLVGDHCQLGPV++CKK
Sbjct: 589 CTCSSAADARLSKIRTRTVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKK 648
Query: 597 AARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
AA AGL+QSLFERLVLLG++P RLQVQYRMHP LSEFPSN FY+G+LQNGVT N+R +G
Sbjct: 649 AAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTG 708
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVIT 716
+D+ WP PN+P FF+ G EE+SASGTS+LNRTEAANVEK+V+ +++GV P QIGVIT
Sbjct: 709 VDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQIGVIT 768
Query: 717 PYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
YEGQR++IVNYM G L +LY+ +E+ASVD+FQGREKDYII++CVRSN+
Sbjct: 769 SYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSND 820
Score = 377 (137.8 bits), Expect = 7.7e-196, Sum P(2) = 7.7e-196
Identities = 70/138 (50%), Positives = 93/138 (67%)
Query: 142 EHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLG 201
EHACRYCG+S+P CV +C V CRKWFCNS TSG HIV+H+VR++HKE HKDSP G
Sbjct: 92 EHACRYCGISDPLCVAKCTV--CRKWFCNSNDGTSGGHIVHHMVRSQHKEAYTHKDSPCG 149
Query: 202 ETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNMMKESQSKDNVTIR-WDIGLNK 260
+T LECY CG +NVF LGFI K + VVV++CR PC ++ Q+ DN + W + +
Sbjct: 150 DTQLECYRCGSKNVFNLGFIPGKKDQVVVIICRTPCASIA--FQNDDNWSPEDWKSVIAE 207
Query: 261 KRVAYFVF--PKEDNELR 276
K++ ++ P E+ R
Sbjct: 208 KQLLSWIVNVPSEEQVAR 225
>DICTYBASE|DDB_G0288923 [details] [associations]
symbol:upf1 "regulator of nonsense transcripts 1"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;IC] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 dictyBase:DDB_G0288923
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000126
GenomeReviews:CM000154_GR GO:GO:0003676 eggNOG:COG1112
GO:GO:0004004 KO:K14326 RefSeq:XP_636490.1
ProteinModelPortal:Q54I89 SMR:Q54I89 STRING:Q54I89
EnsemblProtists:DDB0233746 GeneID:8626873 KEGG:ddi:DDB_G0288923
InParanoid:Q54I89 Uniprot:Q54I89
Length = 1331
Score = 1490 (529.6 bits), Expect = 1.7e-191, Sum P(2) = 1.7e-191
Identities = 296/534 (55%), Positives = 380/534 (71%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRY-SGDAAHPAWQSV 299
++ES S+ ++I W G+NK+ A F F + D E ++VPGDEL+L++ S W+
Sbjct: 385 LRESLSQSGISIEWSQGINKRYTATFPFSRSDLEFKVVPGDELKLQFISSTGGVIEWEDT 444
Query: 300 GHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSG 359
G VI + + ++LE ++ + ++ VW+STS +R+ AMK+FA+ E ++S
Sbjct: 445 GRVIHIDDENLLSLETKSRCSFDSGPKGSYRMEMVWRSTSSERILSAMKSFAIKEQALSS 504
Query: 360 YIYHHLLGH-EVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGK 418
Y+YH LLGH ++ + LP F LP LN SQ+ AV VL P+SLIQGPPGTGK
Sbjct: 505 YLYHALLGHPDIPPAPLDIQLPTNFHLKNLPRLNESQISAVNKVLTAPLSLIQGPPGTGK 564
Query: 419 TVTSAAIVYHMAK--QGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 476
TV S+ I++H+ K +G +VLVC PSNVA+DQL K+ GLKVVRL +K RE V+SPV
Sbjct: 565 TVISSFIIHHLVKYVKGNDKVLVCTPSNVAIDQLTGKLHEIGLKVVRLSSKLREEVASPV 624
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
EHLTLH QV LD EL KL++LK+ G LS+ DEK+Y L+R E I + ADVIC
Sbjct: 625 EHLTLHKQVYKLDQMGDGELGKLRKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVIC 684
Query: 537 CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKK 596
TCVGAGDPRL+ FRF +LIDESTQA+EPECLIPL++GAKQV+LVGDH QLGPV++CKK
Sbjct: 685 ATCVGAGDPRLSQFRFPHILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKK 744
Query: 597 AARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
AGL+QSLFERL+ LG P RL +QYRMHPSL+EFPSN+ YEG L + ++ +R S
Sbjct: 745 VVDAGLSQSLFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQS 804
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVIT 716
FPWP P PMFF+ G EEIS+SGTS++N TEA+ EKIVT FL G +P QIG+IT
Sbjct: 805 -KFPWPQPKDPMFFFNCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIIT 863
Query: 717 PYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
PYEGQRAYI ++M ++G L +LYK IEVASVDSFQGREKDYIILSCVRSN++Q
Sbjct: 864 PYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQ 917
Score = 388 (141.6 bits), Expect = 1.7e-191, Sum P(2) = 1.7e-191
Identities = 76/159 (47%), Positives = 97/159 (61%)
Query: 102 GANNSSNTS--TSQIVEGMAGLSFEETGDDVEGFE--YGKADFTEHACRYCGVSNPACVV 157
GAN S N SQ + GL FE + + HAC YC + VV
Sbjct: 137 GANMSHNMDFLNSQNINSQIGLMDPHLHSSQLNFEEPQEEIELPAHACAYCATHELSTVV 196
Query: 158 RCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFL 217
+C PSC KWFCN +G T SHI+ HLV++KHKEV LH +S G+T LEC+NCGC+N+FL
Sbjct: 197 KCMHPSCGKWFCNGKGKTKSSHIITHLVKSKHKEVALHPESSFGDTTLECFNCGCKNIFL 256
Query: 218 LGFISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWDI 256
LGFI+A+TESVVVLLCR+PC + SK+ + WD+
Sbjct: 257 LGFITARTESVVVLLCRDPCAS----GPSKE---VNWDM 288
Score = 44 (20.5 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 625 RMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFP 660
R S + S ++Y T +G TIN Q+ + P
Sbjct: 1061 RYSNSQTSSSSQTYYGSTNSSGNTINSNQNQFFNTP 1096
Score = 40 (19.1 bits), Expect = 1.0e-154, Sum P(2) = 1.0e-154
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 104 NNSSNTSTSQIVEGMA-GLSFEETGDD 129
NNSSN +++ + G F++ D+
Sbjct: 24 NNSSNNELHKVINTINNGFQFKDDDDE 50
>CGD|CAL0001700 [details] [associations]
symbol:orf19.702 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0006449 "regulation of translational termination"
evidence=IEA] InterPro:IPR003593 InterPro:IPR007087
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00382 CGD:CAL0001700 GO:GO:0005524 GO:GO:0008270
GO:GO:0005622 GO:GO:0017111 eggNOG:COG1112 EMBL:AACQ01000183
EMBL:AACQ01000182 RefSeq:XP_711775.1 RefSeq:XP_711793.1
ProteinModelPortal:Q59PZ8 GeneID:3646609 GeneID:3646623
KEGG:cal:CaO19.702 KEGG:cal:CaO19.8321 Uniprot:Q59PZ8
Length = 1105
Score = 477 (173.0 bits), Expect = 3.0e-51, Sum P(3) = 3.0e-51
Identities = 165/502 (32%), Positives = 248/502 (49%)
Query: 272 DNELRLVPGDELRLRYSGDAA--HPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGF 329
D + L+ DE+ +SG A G +K E + + SQ +P + H
Sbjct: 532 DQAIFLILDDEIM--WSGYIATVDEIASKKGRRVKKDVIELIIMLHPWSQALPRTV-HVS 588
Query: 330 SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQM-VRNTLPRRFGAPGL 388
++ + S R+ AMKT ++ S + LLG E Q+ +N L +F L
Sbjct: 589 NLKILPASQPVSRVLNAMKT--INNASFT----RMLLGKEPIKQIDFKNFL--KFQGQNL 640
Query: 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAV 447
N SQ V+SVL I+++QGPPGTGKT T I+ + +LV A SN+A+
Sbjct: 641 ---NESQKKGVQSVLNNSITVLQGPPGTGKTSTIYEIILQLLDSLNTYPILVVAASNIAI 697
Query: 448 DQLAEKISAT-GLKVVRLCAKSREAV---SSPVEHLTLHYQVRHLDTSEKSELHKLQQLK 503
D +AEK+ G ++R+ A +E S P+ + LH+++ D K QQ+
Sbjct: 698 DNIAEKLMTKHGKDILRITAAEKERDYNRSHPLASICLHHKM--YDAMPM----KYQQVM 751
Query: 504 DE--QG---ELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLID 558
DE +G + ++ KKY + +I A V+ T V AG + N R V+ID
Sbjct: 752 DEMKRGMAPSIGTTAYKKYAQERFFLSNQIVTQAKVVLATPVVAGGIKSLN-NVRVVIID 810
Query: 559 ESTQATEPECLIPLVL-GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGL-- 615
E+TQ++EP LIPL L +++VLVGD QL C L+ SLFER++L G
Sbjct: 811 EATQSSEPTTLIPLALPSVEKLVLVGDQKQLS----CFSLI-PNLSLSLFERVLLNGTYK 865
Query: 616 KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMG 675
P L QYRMHP +SEFP FY G L++G+ N RQS G V + P++F+ G
Sbjct: 866 TPHMLDTQYRMHPEISEFPRTKFYGGLLKDGIDANARQSEG------VISSPLYFWDTKG 919
Query: 676 Q-EEISA-------SGTSYLNRTEAANVEKIVTTFL-RSGVVPSQIGVITPYEGQRAYIV 726
E S G +Y NR E +++++ T + GV P QIG+ITPY GQR I
Sbjct: 920 NAREQSVRNFLREDGGYTYTNRDEIGYIQQVLRTLIITKGVKPEQIGIITPYSGQRDLIS 979
Query: 727 NYMSRNGALR---QQLYKEIEV 745
+ ++ + +Q+ E+++
Sbjct: 980 ATLVKDDVINPSNEQMKTEVDI 1001
Score = 107 (42.7 bits), Expect = 3.0e-51, Sum P(3) = 3.0e-51
Identities = 19/25 (76%), Positives = 24/25 (96%)
Query: 743 IEVASVDSFQGREKDYIILSCVRSN 767
I +AS+D+FQGREKDY+I+SCVRSN
Sbjct: 1019 IMIASIDAFQGREKDYMIMSCVRSN 1043
Score = 65 (27.9 bits), Expect = 3.0e-51, Sum P(3) = 3.0e-51
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 169 CNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESV 228
C+ + + +G I HL +HK V L L ET LEC C N+ L + +
Sbjct: 11 CSEQFSEAGQ-IQKHLSTTRHKSVRLES---LDET-LECEECSDSNIHQLSIVRYGFNDM 65
Query: 229 VVLLCREPCL 238
LLC + CL
Sbjct: 66 S-LLC-QICL 73
>POMBASE|SPCC737.07c [details] [associations]
symbol:SPCC737.07c "DNA polymerase alpha-associated DNA
helicase A (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006273
"lagging strand elongation" evidence=ISO] [GO:0033203 "DNA helicase
A complex" evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISO] [GO:0043596 "nuclear replication
fork" evidence=IC] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISO] InterPro:IPR003593 SMART:SM00382
PomBase:SPCC737.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR eggNOG:COG1112 GO:GO:0006273
GO:GO:0043141 PIR:T41580 RefSeq:NP_588369.1
ProteinModelPortal:O94247 STRING:O94247 EnsemblFungi:SPCC737.07c.1
GeneID:2539412 KEGG:spo:SPCC737.07c HOGENOM:HOG000185831
OMA:ERTIFLE OrthoDB:EOG444PTN NextBio:20800576 GO:GO:0033203
Uniprot:O94247
Length = 660
Score = 519 (187.8 bits), Expect = 8.5e-50, P = 8.5e-50
Identities = 167/525 (31%), Positives = 265/525 (50%)
Query: 279 PGDELRLRY---SGDAAHPAWQ--SVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDF 333
PGD + +R S P SV V+ + +++ L++ + +P + V
Sbjct: 95 PGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERHISVALKSEEDIPSSVTRLSVVKL 154
Query: 334 VWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHE-VEVQMVRNTLP--RRFGAPGLPE 390
V + T ++RM+ M F +++ L+G + +V + + + + F E
Sbjct: 155 VNRVT-YERMRHTMLEFKRSIPEYRNSLFYTLIGRKKADVSIDQKLIGDIKYFNK----E 209
Query: 391 LNASQVFAVK-SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
LNASQ AVK S+ + +SLI GPPGTGKT T I+ + + + ++LVC SN+AVD
Sbjct: 210 LNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQLVLRNK-RILVCGASNLAVDN 268
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEK----SE-----LHKLQ 500
+ +++S++G+ +VRL +R + S ++H +L R D + SE L K+
Sbjct: 269 IVDRLSSSGIPMVRLGHPAR-LLPSILDH-SLDVLSRTGDNGDVIRGISEDIDVCLSKIT 326
Query: 501 QLKD--EQGELSSSDE---KKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQV 555
+ K+ E+ E+ + K Y+ + T I ++ V+ CT GAG +L RF V
Sbjct: 327 KTKNGRERREIYKNIRELRKDYRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAV 386
Query: 556 LIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL-- 613
+IDE++QA EP+C IPL LG +V+L GDH QL P + K+ S+FERLV
Sbjct: 387 IIDEASQALEPQCWIPL-LGMNKVILAGDHMQLSPNVQSKRPYI-----SMFERLVKSQG 440
Query: 614 GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF--PWPVPNRPMFFY 671
L L +QYRMH +S+FPS++FY+ L + +R ++ + + P++FY
Sbjct: 441 DLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFY 500
Query: 672 VQMG--QEEISASGT------SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRA 723
+G QE+ + S N EA V ++ L +G+ I V+TPY Q A
Sbjct: 501 DTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVA 560
Query: 724 YIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
I + G E+E+ SVD QGREK+ II S VRSN+
Sbjct: 561 LIRQLLKEKGI-------EVEMGSVDKVQGREKEAIIFSLVRSND 598
>SGD|S000000978 [details] [associations]
symbol:ECM32 "DNA dependent ATPase/DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0006449 "regulation of translational
termination" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] SGD:S000000978 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0003723 EMBL:BK006939 GO:GO:0005844
eggNOG:COG1112 GeneTree:ENSGT00700000104467 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 EMBL:U18922 GO:GO:0003724 PIR:S30862
RefSeq:NP_011103.1 ProteinModelPortal:P32644 SMR:P32644
DIP:DIP-5404N IntAct:P32644 MINT:MINT-499764 STRING:P32644
PaxDb:P32644 PeptideAtlas:P32644 EnsemblFungi:YER176W GeneID:856923
KEGG:sce:YER176W CYGD:YER176w HOGENOM:HOG000094475 OMA:KDTPRGT
OrthoDB:EOG4P8JS8 NextBio:983389 Genevestigator:P32644
GermOnline:YER176W GO:GO:0006449 Uniprot:P32644
Length = 1121
Score = 468 (169.8 bits), Expect = 4.5e-47, Sum P(2) = 4.5e-47
Identities = 176/558 (31%), Positives = 276/558 (49%)
Query: 238 LNMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDN--EL-RLVPGDELRL-RYSGDAAH 293
L E++ N I W N+K A+ + +++N EL +L+P + L L R + +
Sbjct: 492 LEQKLENEFVQNFNILWP--RNEKDTAFIINVEKNNNSELEKLLPANLLALGRPAFNERQ 549
Query: 294 PAW------QSVGHV-IK-LTAQEE---VALELRASQGVPVDINHGFSVDFVWKSTSFDR 342
P + Q V ++ IK L+ Q + +EL + + + +G S F TS
Sbjct: 550 PFFFCTQDEQKVWYIFIKELSIQRGKYVLLVELFSWNNLSLPTKNGSS-QFKLLPTS--- 605
Query: 343 MQGAMKTFAVDETSVSGYIYHHLLGHE-VEVQMVRNTLPRRFGAPGLPELNASQVFAVKS 401
Q + FA+ + +I LLG + ++ N L +F + +LN SQ AV+
Sbjct: 606 AQTSRILFAMTRITNPKFI-DLLLGQKPIKEIYFDNRL--KFSSD---KLNRSQKTAVEH 659
Query: 402 VLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSNVAVDQLAEKI--SATG 458
VL I+++QGPPGTGKT T I+ + ++ ++C A SN+A+D +AEKI +
Sbjct: 660 VLNNSITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAIDNIAEKIMENRPQ 719
Query: 459 LKVVRLCAKSREAVSS---PVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL--SSSD 513
+K++R+ +K +E S P+ + LH + + + S ++ K +GE+ S D
Sbjct: 720 IKILRILSKKKEQQYSDDHPLGEICLH-NIVYKNLSPDMQV---VANKTRRGEMISKSED 775
Query: 514 EKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLI-DESTQATEPECLIPL 572
K YK R T + +SQS +I T + AG L + V+I DE+TQ++E L+PL
Sbjct: 776 TKFYKEKNRVTNKVVSQS-QIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPL 834
Query: 573 VL-GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGL--KPIRLQVQYRMHPS 629
L G + V VGD QL + L SLFER++ G P+ L QYRMHP
Sbjct: 835 SLPGIRNFVFVGDEKQLSSFSNIPQ-----LETSLFERVLSNGTYKNPLMLDTQYRMHPK 889
Query: 630 LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFY-VQMGQEEISAS------ 682
+SEFP Y G L++GVT +E+++ WP P+FFY +G E S
Sbjct: 890 ISEFPIKKIYNGELKDGVT-DEQKA------WPGVQHPLFFYQCDLGPESRVRSTQRDIV 942
Query: 683 GTSYLNRTEAANVEKIVTTFLRSGVVP-SQIGVITPYEGQRAYIVNYMSRNGALR----- 736
G +Y N+ E + KI+ + VP +IGVITPY QR + + +++N +
Sbjct: 943 GFTYENKHECVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQIS 1002
Query: 737 -QQLYKEIEVASVDSFQG 753
QQ Y EIE+ + QG
Sbjct: 1003 MQQEYDEIELFNAAGSQG 1020
Score = 102 (41.0 bits), Expect = 4.5e-47, Sum P(2) = 4.5e-47
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 698 IVTTFLRSGVV--PSQIGVITPYEGQRAY-IVNYMSRNGALRQQLYKEIE---VASVDSF 751
+++ L VV P QI + Y+ + G+L+ + I VA+VDSF
Sbjct: 985 LLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVATVDSF 1044
Query: 752 QGREKDYIILSCVRSNEHQRNRYVKTK 778
QG EK +II SCVR+N + +++ K
Sbjct: 1045 QGHEKSFIIFSCVRNNTENKIGFLRDK 1071
>RGD|1589127 [details] [associations]
symbol:LOC684558 "similar to regulator of nonsense transcripts
1" species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IEA]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA]
GO:GO:0006260 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 IPI:IPI00767398
PRIDE:F1LY19 Ensembl:ENSRNOT00000027268 Uniprot:F1LY19
Length = 391
Score = 458 (166.3 bits), Expect = 7.8e-43, P = 7.8e-43
Identities = 82/120 (68%), Positives = 101/120 (84%)
Query: 651 ERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPS 710
+R G DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G P
Sbjct: 2 DRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPD 61
Query: 711 QIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
QIG+ITPYEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+NEHQ
Sbjct: 62 QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ 121
>RGD|2322000 [details] [associations]
symbol:LOC100363957 "hypothetical protein LOC100363957"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 RGD:2322000
GO:GO:0008270 GeneTree:ENSGT00550000074391 IPI:IPI00777941
Ensembl:ENSRNOT00000014695 Uniprot:F1M404
Length = 919
Score = 460 (167.0 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 128/379 (33%), Positives = 208/379 (54%)
Query: 406 PISLIQGPPGTGKTVTSAAIVYHMAK-------QGQGQ-----VLVCAPSNVAVDQLAEK 453
PI++I G G GK+ A ++ + + + G+ +L+ + +NVAVD++
Sbjct: 465 PITVIHGVFGAGKSYLLAVVILFLVELFEKCDSEAVGRARPWKLLISSSTNVAVDRVLLG 524
Query: 454 ISATGL-KVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512
+ + G K +R+ S ++ PV +LH + ++ + ELH L +++E +
Sbjct: 525 LLSLGFEKFIRV--GSVRKIAKPVLPYSLHASSDN-ESEQLKELHAL--MREELTPIERV 579
Query: 513 DEKK-YKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIP 571
+K + K T R + + A V+ TC P + + +F V++DE +Q TEP L+P
Sbjct: 580 YVRKSIEQHKLGTNRVLLKQARVVGITCAACPFPCMNDLKFPVVVLDECSQMTEPASLLP 639
Query: 572 LV-LGAKQVVLVGDHCQLGPVIMCKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPS 629
+ ++++LVGD QL P I AA GL Q+LF+RL L+G KPI+L+ QYR HP
Sbjct: 640 IARFECEKLILVGDPKQLPPTIQGSDAAHGNGLEQTLFDRLCLMGHKPIQLRTQYRCHPV 699
Query: 630 LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR 689
+S ++ FYEG L NG I+ER+ S + W +P + FY G E++ S++N
Sbjct: 700 ISAIANDLFYEGNLVNG--ISERERSPV-LEW-LPT--LCFYNVTGTEQVEREN-SFVNV 752
Query: 690 TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD 749
EAA K++ + + SG+ S IGVIT Y+ Q I + +S + K +EV++VD
Sbjct: 753 AEAAFTLKLIRSLIASGLEGSMIGVITLYKSQMYKICSLLSAVDVDHPDV-KAVEVSTVD 811
Query: 750 SFQGREKDYIILSCVRSNE 768
+FQG EK+ IILSCVR+ +
Sbjct: 812 AFQGAEKEIIILSCVRTRQ 830
>GENEDB_PFALCIPARUM|MAL7P1.12 [details] [associations]
symbol:MAL7P1.12 "erythrocyte
membrane-associated antigen" species:5833 "Plasmodium falciparum"
[GO:0016020 "membrane" evidence=ISS] GO:GO:0016020
InterPro:IPR014001 SMART:SM00487 EMBL:AL844506
RefSeq:XP_001348968.1 ProteinModelPortal:Q8IC35 IntAct:Q8IC35
MINT:MINT-1611439 EnsemblProtists:MAL7P1.12:mRNA GeneID:2655186
KEGG:pfa:MAL7P1.12 EuPathDB:PlasmoDB:PF3D7_0703500
HOGENOM:HOG000283891 ProtClustDB:CLSZ2433351 Uniprot:Q8IC35
Length = 2283
Score = 373 (136.4 bits), Expect = 6.4e-40, Sum P(2) = 6.4e-40
Identities = 103/329 (31%), Positives = 161/329 (48%)
Query: 460 KVVRLCAKSREAVSSPVEHLTL-HYQVRHLDTSEKSELHK-----LQQLKDEQGELSSSD 513
K + A S A ++ VE L + Q + S+ H+ + KD ++
Sbjct: 1822 KKILAVADSNVAANNLVEGLKKRNIQAVRVGAGSDSDFHEEAIMEFHRYKDLLKLRKNNM 1881
Query: 514 EKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLV 573
+K+ K +K E + +V+ TCVG+G N +F +V+IDE Q+ EP LIPL
Sbjct: 1882 QKEAKVMKALLFLEAVKKYNVVIATCVGSGHEIFDNEKFERVIIDECAQSIEPSNLIPLG 1941
Query: 574 LGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRL-QVQYRMHPSLSE 632
+VL+GDH QL P I+ A + GL +SL ER V+ + P+ L Q RMH S+
Sbjct: 1942 HYCNNLVLIGDHKQLPPTIISPDAIKLGLDKSLLERFVMAKIAPVHLLNTQRRMHLSICV 2001
Query: 633 FPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN-RPMFFYVQMGQEEI---SASGTSYLN 688
FP+ FY+ L+ E + F WP P R F V +G+ +A GTS N
Sbjct: 2002 FPNFHFYDNKLKTANVTEENRPIIKGFLWPNPKCRLAFIDVSIGKPGSKFENAYGTSKFN 2061
Query: 689 RTEAANVEKIVTTFLRSGVVP-SQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVAS 747
E + ++ + + G V +IG++T Y+ Q+ + + A + IE+ S
Sbjct: 2062 LYEIEPLITVLKSIINEGCVSVDEIGILTAYDAQKMKLKKAVQ--DAFSYEASHRIEIDS 2119
Query: 748 VDSFQGREKDYIILSCVRSNEHQRNRYVK 776
+D FQG+EKD I+ S VRSN + +++
Sbjct: 2120 IDGFQGKEKDLILFSAVRSNANNELGFLR 2148
Score = 146 (56.5 bits), Expect = 6.4e-40, Sum P(2) = 6.4e-40
Identities = 39/100 (39%), Positives = 54/100 (54%)
Query: 371 EVQMVRNTLPRRFGAP-GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM 429
+V+ + L P LP LN SQ A S L R ++L+QGPPGTGKT + AI+
Sbjct: 1757 QVEDIDKYLIESINLPTNLP-LNDSQKLACLSALTRRLTLVQGPPGTGKTHVACAIIDSW 1815
Query: 430 AKQGQGQ-VLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468
KQ + +L A SNVA + L E + ++ VR+ A S
Sbjct: 1816 HKQNSNKKILAVADSNVAANNLVEGLKKRNIQAVRVGAGS 1855
>UNIPROTKB|Q8IC35 [details] [associations]
symbol:MAL7P1.12 "Erythrocyte membrane-associated antigen"
species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
evidence=ISS] GO:GO:0016020 InterPro:IPR014001 SMART:SM00487
EMBL:AL844506 RefSeq:XP_001348968.1 ProteinModelPortal:Q8IC35
IntAct:Q8IC35 MINT:MINT-1611439 EnsemblProtists:MAL7P1.12:mRNA
GeneID:2655186 KEGG:pfa:MAL7P1.12 EuPathDB:PlasmoDB:PF3D7_0703500
HOGENOM:HOG000283891 ProtClustDB:CLSZ2433351 Uniprot:Q8IC35
Length = 2283
Score = 373 (136.4 bits), Expect = 6.4e-40, Sum P(2) = 6.4e-40
Identities = 103/329 (31%), Positives = 161/329 (48%)
Query: 460 KVVRLCAKSREAVSSPVEHLTL-HYQVRHLDTSEKSELHK-----LQQLKDEQGELSSSD 513
K + A S A ++ VE L + Q + S+ H+ + KD ++
Sbjct: 1822 KKILAVADSNVAANNLVEGLKKRNIQAVRVGAGSDSDFHEEAIMEFHRYKDLLKLRKNNM 1881
Query: 514 EKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLV 573
+K+ K +K E + +V+ TCVG+G N +F +V+IDE Q+ EP LIPL
Sbjct: 1882 QKEAKVMKALLFLEAVKKYNVVIATCVGSGHEIFDNEKFERVIIDECAQSIEPSNLIPLG 1941
Query: 574 LGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRL-QVQYRMHPSLSE 632
+VL+GDH QL P I+ A + GL +SL ER V+ + P+ L Q RMH S+
Sbjct: 1942 HYCNNLVLIGDHKQLPPTIISPDAIKLGLDKSLLERFVMAKIAPVHLLNTQRRMHLSICV 2001
Query: 633 FPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN-RPMFFYVQMGQEEI---SASGTSYLN 688
FP+ FY+ L+ E + F WP P R F V +G+ +A GTS N
Sbjct: 2002 FPNFHFYDNKLKTANVTEENRPIIKGFLWPNPKCRLAFIDVSIGKPGSKFENAYGTSKFN 2061
Query: 689 RTEAANVEKIVTTFLRSGVVP-SQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVAS 747
E + ++ + + G V +IG++T Y+ Q+ + + A + IE+ S
Sbjct: 2062 LYEIEPLITVLKSIINEGCVSVDEIGILTAYDAQKMKLKKAVQ--DAFSYEASHRIEIDS 2119
Query: 748 VDSFQGREKDYIILSCVRSNEHQRNRYVK 776
+D FQG+EKD I+ S VRSN + +++
Sbjct: 2120 IDGFQGKEKDLILFSAVRSNANNELGFLR 2148
Score = 146 (56.5 bits), Expect = 6.4e-40, Sum P(2) = 6.4e-40
Identities = 39/100 (39%), Positives = 54/100 (54%)
Query: 371 EVQMVRNTLPRRFGAP-GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM 429
+V+ + L P LP LN SQ A S L R ++L+QGPPGTGKT + AI+
Sbjct: 1757 QVEDIDKYLIESINLPTNLP-LNDSQKLACLSALTRRLTLVQGPPGTGKTHVACAIIDSW 1815
Query: 430 AKQGQGQ-VLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468
KQ + +L A SNVA + L E + ++ VR+ A S
Sbjct: 1816 HKQNSNKKILAVADSNVAANNLVEGLKKRNIQAVRVGAGS 1855
>TAIR|locus:2162858 [details] [associations]
symbol:AT5G35970 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] EMBL:CP002688 GO:GO:0009570 GO:GO:0003677
GO:GO:0009941 InterPro:IPR014001 SMART:SM00487 IPI:IPI00520082
RefSeq:NP_198446.3 UniGene:At.45828 ProteinModelPortal:F4K1G7
SMR:F4K1G7 PRIDE:F4K1G7 EnsemblPlants:AT5G35970.1 GeneID:833589
KEGG:ath:AT5G35970 OMA:DHFQREL Uniprot:F4K1G7
Length = 961
Score = 451 (163.8 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 139/393 (35%), Positives = 207/393 (52%)
Query: 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 463
+RP+ ++QGPPGTGKT ++ +QG+ +VLV AP+N AVD + EK+ GL +VR
Sbjct: 502 KRPVMIVQGPPGTGKTGMLKEVITLAVQQGE-RVLVTAPTNAAVDNMVEKLLHLGLNIVR 560
Query: 464 LCAKSREAVSSPVEHLTLHYQVRHLDTS-------EKSELHK-LQQ-LKDE---QG--EL 509
+ +R +SS V +L V S +KS+L K L+Q L+D+ G +L
Sbjct: 561 VGNPAR--ISSAVASKSLGEIVNSKLASFRAELERKKSDLRKDLRQCLRDDVLAAGIRQL 618
Query: 510 SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR-FRQVLIDESTQATEPEC 568
K K ++ T +EI +A V+ T +GA DP + F V+IDE+ Q+ EP C
Sbjct: 619 LKQLGKTLKKKEKETVKEILSNAQVVFATNIGAADPLIRRLETFDLVVIDEAGQSIEPSC 678
Query: 569 LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRM 626
IP++ G K+ +L GD CQL PV++ +KA GL SL ER L G+ +L QYRM
Sbjct: 679 WIPILQG-KRCILSGDPCQLAPVVLSRKALEGGLGVSLLERAASLHDGVLATKLTTQYRM 737
Query: 627 HPSLSEFPSNSFYEGTLQNGVTINER---QSSGIDFPW----PV---PNRPMFFYVQMGQ 676
+ ++ + S Y G L++ ++ S + W P+ R + + +G
Sbjct: 738 NDVIAGWASKEMYGGWLKSAPSVASHLLIDSPFVKATWITQCPLVLLDTRMPYGSLSVGC 797
Query: 677 EE-ISASGTSYL-NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGA 734
EE + +GT L N EA V V + + +GV P I V +PY Q V + R
Sbjct: 798 EERLDPAGTGSLYNEGEADIVVNHVISLIYAGVSPMAIAVQSPYVAQ----VQLL-RERL 852
Query: 735 LRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ +EVA++DSFQGRE D +I+S VRSN
Sbjct: 853 DDFPVADGVEVATIDSFQGREADAVIISMVRSN 885
Score = 46 (21.3 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 152 NPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAK 188
N CVV V RK FC+ G GS + R K
Sbjct: 32 NYVCVVGVRVFPTRKVFCS--GVNGGSSVTKKKPRRK 66
>TAIR|locus:2056896 [details] [associations]
symbol:AT2G03270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AC005313 EMBL:AC006284 HOGENOM:HOG000185831
TIGRFAMs:TIGR00376 UniGene:At.10455 UniGene:At.71239 EMBL:AY045820
EMBL:AY091361 IPI:IPI00521943 PIR:T02699 RefSeq:NP_565299.1
ProteinModelPortal:O81047 SMR:O81047 STRING:O81047 PaxDb:O81047
PRIDE:O81047 EnsemblPlants:AT2G03270.1 GeneID:814856
KEGG:ath:AT2G03270 TAIR:At2g03270 InParanoid:O81047 OMA:GHPSRVS
PhylomeDB:O81047 ProtClustDB:CLSN2687941 ArrayExpress:O81047
Genevestigator:O81047 Uniprot:O81047
Length = 639
Score = 438 (159.2 bits), Expect = 5.7e-39, P = 5.7e-39
Identities = 133/407 (32%), Positives = 205/407 (50%)
Query: 391 LNASQVFAV-KSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ A+ K++ + + L+ GPPGTGKT T IV K+G ++L CA SN+AVD
Sbjct: 190 LDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGS-KILACAASNIAVDN 248
Query: 450 LAEKISATGLKVVRLCAKSR---EAVSSPVEHLTLHYQVRHLDTSEKSELH----KLQQL 502
+ E++ +K+VR+ +R + + S ++ L L + E+ KL +
Sbjct: 249 IVERLVPHKVKLVRVGHPARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNGKLLKA 308
Query: 503 KDE------QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVL 556
KD+ Q EL + +++ K + A ++ ++ADVI T GA +L N F V+
Sbjct: 309 KDKNTRRLIQKELRTLGKEERKRQQLAVS-DVIKNADVILTTLTGALTRKLDNRTFDLVI 367
Query: 557 IDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV-LLG- 614
IDE QA E C I L+ G++ +L GDH QL P I +A R GL ++LFERL L G
Sbjct: 368 IDEGAQALEVACWIALLKGSR-CILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGD 426
Query: 615 -LKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID-FPWPVPNRPMFFYV 672
+K + L VQYRMH + + S Y+ + ++ ++ V
Sbjct: 427 EIKSM-LTVQYRMHELIMNWSSKELYDNKITAHSSVASHMLFDLENVTKSSSTEATLLLV 485
Query: 673 QMG---QEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYM 729
EE S N EA + SGV PS IG+ITPY Q ++ +
Sbjct: 486 DTAGCDMEEKKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQ-VMLLRIL 544
Query: 730 SRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVK 776
G +++ K++E+++VD FQGREK+ II+S VRSN + ++K
Sbjct: 545 --RG--KEEKLKDMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLK 587
>UNIPROTKB|E1BG37 [details] [associations]
symbol:E1BG37 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 EMBL:DAAA02016483 IPI:IPI00912094
Ensembl:ENSBTAT00000017567 OMA:HKLGTNK Uniprot:E1BG37
Length = 933
Score = 444 (161.4 bits), Expect = 9.1e-39, P = 9.1e-39
Identities = 126/379 (33%), Positives = 200/379 (52%)
Query: 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ---------GQGQ---VLVCAPSNVAVDQLAEK 453
PI++I G G GK+ A ++ + G + +L+ + +NVAVD++
Sbjct: 471 PITIIHGVFGAGKSYLLAVVILFFVQLFEKCEALTVGNARPWKLLISSSTNVAVDRVLLG 530
Query: 454 ISATGL-KVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512
+ + G K VR+ S ++ PV +L Y + + ELH L +K++ +
Sbjct: 531 LLSLGFEKFVRV--GSVRKIAKPVLPYSL-YAGSENENEQLKELHAL--MKEDLTPVERV 585
Query: 513 DEKK-YKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIP 571
+K + K T + + + V+ TC P + + +F V++DE +Q TEP L+P
Sbjct: 586 YVRKSIEQHKLGTNKTLLKQVRVVGVTCAACPFPCMNDLKFPVVVLDECSQMTEPASLLP 645
Query: 572 LV-LGAKQVVLVGDHCQLGPVIMCKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPS 629
+ ++++LVGD QL P I AA GL Q+LF+RL L+G KPI L+ QYR HP+
Sbjct: 646 IARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPT 705
Query: 630 LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR 689
+S ++ FYEG L NG++ ER W +P + FY G E+I G S+ N
Sbjct: 706 ISAIANDLFYEGNLMNGISETERSPL---LEW-LPT--LCFYNVKGLEQIER-GNSFHNV 758
Query: 690 TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD 749
EAA K++ + + SG+ S IGVIT Y+ Q + + +S L K ++V++VD
Sbjct: 759 AEAAFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAMDFDHPNL-KAVQVSTVD 817
Query: 750 SFQGREKDYIILSCVRSNE 768
+FQG EK+ IILSCVR+ +
Sbjct: 818 AFQGAEKEIIILSCVRTRQ 836
>UNIPROTKB|F1PCI1 [details] [associations]
symbol:C4orf21 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AAEX03016829
Ensembl:ENSCAFT00000018553 Uniprot:F1PCI1
Length = 1024
Score = 443 (161.0 bits), Expect = 1.5e-38, P = 1.5e-38
Identities = 128/393 (32%), Positives = 209/393 (53%)
Query: 392 NASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ-------GQV-----LV 439
NA +V V++ PI++I G G GK+ A ++ + + G V L+
Sbjct: 556 NAEEVKKVQTHTL-PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEVLTVGNVRPWKLLI 614
Query: 440 CAPSNVAVDQLAEKISATGL-KVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK 498
+ +NVAVD++ + + G K VR+ S ++ P+ +LH + + + ELH
Sbjct: 615 SSSTNVAVDRVLLGLLSLGFEKFVRV--GSVRKIAKPILPYSLHAGSEN-ENEQLKELHG 671
Query: 499 LQQLKDEQGELSSSDEKK-YKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLI 557
L +K++ L +K + K T + + + V+ TC P + + +F V++
Sbjct: 672 L--MKEDLTPLERVYVRKSIEQHKLGTNKTLLKQVRVVGVTCAACPFPCMNDLKFPVVVL 729
Query: 558 DESTQATEPECLIPLV-LGAKQVVLVGDHCQLGPVIMCKKAARA-GLAQSLFERLVLLGL 615
DE +Q TEP L+P+ ++++LVGD QL P I AA GL Q+LF+RL L+G
Sbjct: 730 DECSQITEPASLLPIARFECEKLILVGDPKQLSPTIQGSDAAHENGLEQTLFDRLCLMGH 789
Query: 616 KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMG 675
KP+ L+ QYR HP++S+ ++ FYEG L +G++ ER G W +P + FY G
Sbjct: 790 KPVLLRTQYRCHPAISDISNDLFYEGNLVDGISETER---GPLLEW-LPT--LCFYNIKG 843
Query: 676 QEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGAL 735
E+I S+ N EAA K++ + + SG+ S IGVIT Y+ Q + + +S
Sbjct: 844 PEQIERDN-SFHNVAEAAFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFD 902
Query: 736 RQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+ K ++V++VD+FQG EK+ IILSCVR+ +
Sbjct: 903 NPDI-KAVQVSTVDAFQGAEKEIIILSCVRTRQ 934
>UNIPROTKB|Q6ZU11 [details] [associations]
symbol:Q6ZU11 "Uncharacterized protein FLJ44066"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0016021 GO:GO:0008270
eggNOG:COG1112 UniGene:Hs.713663 EMBL:AK126054 EMBL:AL137700
IPI:IPI00300207 IPI:IPI00880006 PIR:T46441 RefSeq:NP_060862.3
UniGene:Hs.380346 ProteinModelPortal:Q6ZU11 SMR:Q6ZU11
PhosphoSite:Q6ZU11 DMDM:74711848 PaxDb:Q6ZU11 PRIDE:Q6ZU11
GeneID:55345 KEGG:hsa:55345 CTD:55345 HPA:HPA030706
neXtProt:NX_Q6ZU11 PharmGKB:PA144596502 HOGENOM:HOG000155510
InParanoid:Q6ZU11 PhylomeDB:Q6ZU11 GenomeRNAi:55345 NextBio:59679
ArrayExpress:Q6ZU11 Bgee:Q6ZU11 Genevestigator:Q6ZU11
Uniprot:Q6ZU11
Length = 926
Score = 432 (157.1 bits), Expect = 2.0e-37, P = 2.0e-37
Identities = 122/378 (32%), Positives = 197/378 (52%)
Query: 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ---------GQGQ---VLVCAPSNVAVDQLAEK 453
PI++I G G GK+ A ++ + G + +L+ + +NVAVD++
Sbjct: 470 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLG 529
Query: 454 ISATGLK-VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512
+ + G + +R+ S ++ P+ +LH + ++ + ELH L + +D
Sbjct: 530 LLSLGFENFIRV--GSVRKIAKPILPYSLHAGSEN-ESEQLKELHALMK-EDLTPTERVY 585
Query: 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPL 572
K + K T R + + V+ TC P + + +F V++DE +Q TEP L+P+
Sbjct: 586 VRKSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLKFPVVVLDECSQITEPASLLPI 645
Query: 573 V-LGAKQVVLVGDHCQLGPVIMCKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPSL 630
++++LVGD QL P I AA GL Q+LF+RL L+G KPI L+ QYR HP++
Sbjct: 646 ARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAI 705
Query: 631 SEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRT 690
S ++ FY+G L NGVT ER W +P + FY G E+I S+ N
Sbjct: 706 SAIANDLFYKGALMNGVTEIERSPL---LEW-LPT--LCFYNVKGLEQIERDN-SFHNVA 758
Query: 691 EAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDS 750
EA K++ + + SG+ S IGVIT Y+ Q + + +S + K ++V++VD+
Sbjct: 759 EATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDI-KTVQVSTVDA 817
Query: 751 FQGREKDYIILSCVRSNE 768
FQG EK+ IILSCVR+ +
Sbjct: 818 FQGAEKEIIILSCVRTRQ 835
>UNIPROTKB|F1RY71 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051260 "protein homooligomerization" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0032797 "SMN complex" evidence=IEA] [GO:0032575 "ATP-dependent
5'-3' RNA helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0051260 GO:GO:0043022 GO:GO:0000049
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043141
GO:GO:0032797 GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:CU694814 RefSeq:XP_003122472.2
Ensembl:ENSSSCT00000014076 GeneID:100520173 KEGG:ssc:100520173
Uniprot:F1RY71
Length = 987
Score = 432 (157.1 bits), Expect = 2.3e-37, P = 2.3e-37
Identities = 145/405 (35%), Positives = 206/405 (50%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ASQ AV L Q+ +++I GPPGTGKT T I+ KQG +VL CAPSNVAVD
Sbjct: 189 LDASQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGS-KVLCCAPSNVAVDN 247
Query: 450 LAEKISATGLKVVRLCAKSR--EAVSSPVEHLTLHYQ-----VRHLDTSEKSELHKLQQL 502
L E+++ ++VRL +R E++ L V + L K ++
Sbjct: 248 LVERLARWKQRIVRLGHPARLLESIQQHSLDAVLARSDGARVVADIRRDIDQVLGKTKKT 307
Query: 503 KDEQGELSSSDEKKY--KALKRATEREISQS---ADVICCTCVGAGD--PR--LANFRFR 553
+D++ + DE K K LK E + +S A V+ T GA P L + F
Sbjct: 308 QDKREKSHFRDEIKLLRKELKEREEAAMLESLTAARVVLATNAGASSDGPLKLLPDGHFD 367
Query: 554 QVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL- 612
V+IDE QA E C +PL L A++ +L GDH QL P I+ KAA AGLA SL ERLV
Sbjct: 368 VVVIDECAQALEASCWVPL-LKARKCILAGDHKQLPPTIISHKAALAGLALSLMERLVEE 426
Query: 613 LGLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINE---RQSSGI------DFPWP 662
G +R L VQYRMH +++++ S + Y G L ++ R G+ P
Sbjct: 427 RGAGVLRMLTVQYRMHQAIAQWASEALYHGRLTAHASVAGHLLRDLPGVAATEETGIPLL 486
Query: 663 VPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQR 722
+ + ++ +E+ + G N E V V + +GV + VITPY Q
Sbjct: 487 LVDTAGCGLFELEEEDEQSKG----NPGEVRLVRLHVQALVDAGVPAGDVAVITPYNLQ- 541
Query: 723 AYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
V+ + ++ A R + E+E+ SVD FQGREK+ +ILS VRSN
Sbjct: 542 ---VDLLRQSLAQR---HPELEIKSVDGFQGREKEAVILSFVRSN 580
>DICTYBASE|DDB_G0268924 [details] [associations]
symbol:DDB_G0268924 "Helicase SEN1" species:44689
"Dictyostelium discoideum" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268924
GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112
ProtClustDB:CLSZ2429765 RefSeq:XP_646844.2
ProteinModelPortal:Q55F26 EnsemblProtists:DDB0202279 GeneID:8616527
KEGG:ddi:DDB_G0268924 InParanoid:Q55F26 Uniprot:Q55F26
Length = 1772
Score = 351 (128.6 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 95/251 (37%), Positives = 137/251 (54%)
Query: 524 TEREISQS---ADVICCTCVGAGDPRLAN-FRFRQVLIDESTQATEPECLIPLVLG-AKQ 578
T+RE S S A ++ T G+G + N FR +L+DESTQ+TEP +IPL +G ++
Sbjct: 1347 TQREKSDSIYRASIVFSTLSGSGSETVKNNFRADIILVDESTQSTEPSSIIPLCIGNIEK 1406
Query: 579 VVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIR-LQVQYRMHPSLSEFPSNS 637
++LVGD QL P I ++A GL SLFERL + P+ L VQYRMHP++S FPSN
Sbjct: 1407 LILVGDPLQLPPTIFSTESAENGLNISLFERLSKV--LPVEMLHVQYRMHPTISRFPSNQ 1464
Query: 638 FYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEK 697
FY L +G + + +F + P+ FY + +E S S N+ E V
Sbjct: 1465 FYRDRLLDGDNVKSLVYNQHNFHSDIKYGPIRFYDVIDSKEESGK-RSLKNKLEITMVFT 1523
Query: 698 IVTTFLRS--GVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGRE 755
++ ++ G+ITPY+ Q++ I ++ L IE +++D FQG E
Sbjct: 1524 LIKKLVQDYPECKKFSFGIITPYKLQKSEI---KEQHKQFNYPL--NIETSTIDGFQGSE 1578
Query: 756 KDYIILSCVRS 766
KD IILSCVRS
Sbjct: 1579 KDIIILSCVRS 1589
Score = 140 (54.3 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 36/112 (32%), Positives = 65/112 (58%)
Query: 351 AVDETSVSGYIYHHLL-----GHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQ- 404
A+ + SG ++ +L H++ + R +P + + ELN SQ ++++ L
Sbjct: 1199 AIKDFRNSGILFDQILQPSRKDHDI-LSSKRMAIPSLLRSMCIQELNTSQFNSIETSLST 1257
Query: 405 RPISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455
+ I+LIQGPPGTGKT T ++ +A + ++LVC PS+ +VD++A++ S
Sbjct: 1258 KGITLIQGPPGTGKTTTIYYLLSILLAINPEFKILVCGPSHASVDEIAKRCS 1309
>DICTYBASE|DDB_G0268662 [details] [associations]
symbol:DDB_G0268662 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268662
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR002058 ProtClustDB:CLSZ2429765
RefSeq:XP_646848.1 ProteinModelPortal:Q55F22
EnsemblProtists:DDB0304624 GeneID:8616531 KEGG:ddi:DDB_G0268662
InParanoid:Q55F22 Uniprot:Q55F22
Length = 2523
Score = 342 (125.4 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 98/274 (35%), Positives = 147/274 (53%)
Query: 498 KLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGD-PRLANFRFRQVL 556
KLQ + + +S D K A ++A I ++A +I T +G P +NF+ VL
Sbjct: 1681 KLQNISPDCHRISLFD--KTPAQRKA----IIRNATIIFATLSASGSKPIRSNFKANIVL 1734
Query: 557 IDESTQATEPECLIPLVLG-AKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGL 615
+DESTQ++EP LIPL +G ++++LVGD QL P I ++A+ GL SLFERL +
Sbjct: 1735 VDESTQSSEPASLIPLCIGNIEKLILVGDPLQLPPTIFSSESAKNGLNISLFERLSKV-- 1792
Query: 616 KPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQM 674
P+ L QYRMHP++S FPSN FY+ L +G + + +F + P+ FY +
Sbjct: 1793 LPVEMLNTQYRMHPTISRFPSNQFYKDRLLDGDNVKSLVYNQHNFHSDIKYGPIRFYDVI 1852
Query: 675 GQEEISASGTSYLNRTEAANVEKIVTTFLRS--GVVPSQIGVITPYEGQRAYIVNYMSRN 732
+E S S N+ E V ++ ++ G+ITPY+ Q++ I ++
Sbjct: 1853 DSKEESGK-RSLKNKLEITMVFTLIKKLVQDYPECKKFSFGIITPYKLQKSEI---KEQH 1908
Query: 733 GALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
L IE +++D QG EKD IILSCVRS
Sbjct: 1909 KQFNYPL--NIETSTIDGVQGSEKDIIILSCVRS 1940
Score = 149 (57.5 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 45/132 (34%), Positives = 72/132 (54%)
Query: 324 DINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRF 383
DI H V ST+F R A + F +T ++ + L + + M R +P
Sbjct: 1531 DILHFIKVS---NSTTFIRELEAPEIFKNSKTLLNQILQPSLEVYNLMTSM-RMEIPSLL 1586
Query: 384 GAPGLPELNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCA 441
+ + ELN SQ AV++ L + I+LIQGPPGTGKT T ++ +A + ++LVC
Sbjct: 1587 RSMCIQELNTSQFSAVETSLSTKGITLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCG 1646
Query: 442 PSNVAVDQLAEK 453
PS+ +VD++A++
Sbjct: 1647 PSHASVDEVAKR 1658
>ZFIN|ZDB-GENE-070912-617 [details] [associations]
symbol:si:dkey-97a13.6 "si:dkey-97a13.6"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 ZFIN:ZDB-GENE-070912-617
GO:GO:0005524 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391 EMBL:BX663525
IPI:IPI00499390 RefSeq:XP_699251.2 UniGene:Dr.89869
Ensembl:ENSDART00000017829 GeneID:570654 KEGG:dre:570654
NextBio:20890238 Uniprot:E7F3B1
Length = 2781
Score = 334 (122.6 bits), Expect = 3.5e-36, Sum P(4) = 3.5e-36
Identities = 103/318 (32%), Positives = 157/318 (49%)
Query: 462 VRLCAKSREAVSSP-VEHLTLHYQVR--HLDTSEKSELHKLQQLKDEQGELSSSDEKKYK 518
++L KSR+ S P + +TLH+++R H S++ ++K + L+ +D ++YK
Sbjct: 2397 LQLSHKSRQERSKPELRAITLHHRIRMGHNPYSQRITDFD-DRIKSDPYSLTDTDIEEYK 2455
Query: 519 ALKRATEREISQSADVICCTCVGAGDPRLAN-FRFRQVLIDESTQATEPECLIPLV-LGA 576
L + D+I CTC A P L RQ+LIDE ATEP+ L+PLV
Sbjct: 2456 KLLNDARLHELERHDIILCTCTAAASPNLKKTLSARQILIDECAMATEPQTLVPLVSFKP 2515
Query: 577 KQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
++VVL+GDH QL P++ R G+ +SLFER + + I L QYRMH + +FPS
Sbjct: 2516 EKVVLLGDHKQLRPIVKNNHVRRLGMTRSLFERYMD---RAIMLDTQYRMHEEICKFPSE 2572
Query: 637 SFYEGTLQNGVTINERQSS-GIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAAN- 694
++Y L+ + ER S + ++ + F G+E T+ N AN
Sbjct: 2573 AYYNDMLKT--VVRERTSVLNAETEGRRQSKRILFGDIRGEEIGLVVSTARGNENSKANF 2630
Query: 695 --VEKIVTTFLRSGVV----PSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV 748
V+K V ++ V P I +++PY Q A I +S +L K V ++
Sbjct: 2631 DEVKKAVEICIQLVTVGRVRPEDIAILSPYNAQVAQIRERLSDF-----EL-KGFTVTTI 2684
Query: 749 DSFQGREKDYIILSCVRS 766
QG E Y+ILS VRS
Sbjct: 2685 TKSQGSEWQYVILSIVRS 2702
Score = 170 (64.9 bits), Expect = 3.5e-36, Sum P(4) = 3.5e-36
Identities = 60/196 (30%), Positives = 87/196 (44%)
Query: 317 ASQGVP-VDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMV 375
AS +P N F+V+ + K R + A+ V H + ++ Q V
Sbjct: 2214 ASMKIPKFKRNETFTVEIIPKLLPDIRKESAVNNLKGANELVQNIALKHRIVNQSSNQDV 2273
Query: 376 RNTLPRRFGAP-GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA---- 430
L R AP GLP+LN SQ A++ L ++IQGPPGTGKTV A IVY +
Sbjct: 2274 PLYLLMREEAPAGLPQLNESQFKALEKALNGKFTIIQGPPGTGKTVVGAYIVYWFSQLNS 2333
Query: 431 -----------KQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHL 479
K + +L C PSN +VD +AE + G K+ L SR+ +
Sbjct: 2334 RNLWRLKDPTDKDKREVILYCGPSNKSVDVVAEYLLKFGEKLKLLRVYSRQMEMQEYPYP 2393
Query: 480 TLHYQVRHLDTSEKSE 495
+ Q+ H E+S+
Sbjct: 2394 GSNLQLSHKSRQERSK 2409
Score = 142 (55.0 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 63/235 (26%), Positives = 110/235 (46%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMC---KKAARAGLAQSL 606
F +LIDE++Q E E L+ L L K +VVL GDH Q+ P + K + L L
Sbjct: 681 FTHILIDEASQMLEGEALMALGLADKHTRVVLAGDHMQMAPKLFSVTDDKRSEHTLLNRL 740
Query: 607 F----ERLVLLGLKP-IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPW 661
F ++ + + K I YR + +F S FY + +G+ ++ G P
Sbjct: 741 FHYYQDQSINIAKKSRIIFNENYRSTTEIVDFVSTYFY---VSDGI-----KARGDVHPH 792
Query: 662 PVPNRPMFFYVQMGQEEISAS--GTSYLNRTEAANVEKIVTTFLRSGVV------PSQIG 713
P +P+ F+ G+ +S++ TS+LN E +V +V L + P QI
Sbjct: 793 P-RLKPLIFHHVRGECHLSSTITSTSWLNYAEVNSVVNMVQVLLTDWPMEWGDKDPKQIC 851
Query: 714 VITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
V++ EGQ+ + LR++ + + V ++ + QG++ II++ V + +
Sbjct: 852 VLS--EGQQVAAIRIH-----LRRKGFYGVSVQNLANIQGKQFRVIIITTVHTRD 899
Score = 84 (34.6 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 409 LIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448
LI GP GTGKT+ A+ +A + Q +VL+C +N + D
Sbjct: 556 LIYGPFGTGKTLCLASAAKELAHRSQNKVLICTYTNSSAD 595
Score = 49 (22.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 471 AVSSPVEHLTL-HYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREI 528
AV + +H L H + HL T K ++ + ELSS EK + R++ EI
Sbjct: 105 AVWNLQKHTNLDHRTIIHLITQRKRRAESKKEAQPSFQELSSYQEKLLEEY-RSSSNEI 162
Score = 43 (20.2 bits), Expect = 3.5e-36, Sum P(4) = 3.5e-36
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 272 DNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALE 314
D ++ L GD ++++ + + W + +L++ E+ +E
Sbjct: 2029 DFQINLKVGDTVQVQLTSERDRGYWAPTVQLFRLSSSFEICVE 2071
Score = 38 (18.4 bits), Expect = 3.5e-36, Sum P(4) = 3.5e-36
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 164 CRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSP 199
C + N R N IV R + E L K P
Sbjct: 297 CAEILSNERWNRGNRVIVPFFARKEEDEQLLSKYKP 332
Score = 37 (18.1 bits), Expect = 7.9e-23, Sum P(3) = 7.9e-23
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 341 DRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMV 375
D MQ A K F+V + S + + L H + Q +
Sbjct: 715 DHMQMAPKLFSVTDDKRSEHTLLNRLFHYYQDQSI 749
>DICTYBASE|DDB_G0289529 [details] [associations]
symbol:DDB_G0289529 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002934
InterPro:IPR003593 Pfam:PF01909 SMART:SM00382
dictyBase:DDB_G0289529 GO:GO:0005524 EMBL:AAFI02000141
GO:GO:0017111 eggNOG:COG1112 GO:GO:0016779 RefSeq:XP_636183.1
ProteinModelPortal:Q54HF4 EnsemblProtists:DDB0219440 GeneID:8627170
KEGG:ddi:DDB_G0289529 InParanoid:Q54HF4 ProtClustDB:CLSZ2429765
Uniprot:Q54HF4
Length = 1677
Score = 344 (126.2 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 99/291 (34%), Positives = 154/291 (52%)
Query: 485 VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREIS--QSADVICCTCVGA 542
+++L S+ ++ K ++ + E S + +K + + R I+ +SA ++ T G+
Sbjct: 1259 LKNLLNSD-GQIFKPNMVRTGRKEKISPECQKISLKNKNSSRRINLIKSASIVFSTLAGS 1317
Query: 543 GDPRL-ANFRFRQVLIDESTQATEPECLIPLVLGA-KQVVLVGDHCQLGPVIMCKKAARA 600
G + NF VLIDESTQ++EP +IPL LG+ K+++LVGD QL P I K+ A
Sbjct: 1318 GSKAIFENFSPDIVLIDESTQSSEPTSIIPLSLGSVKKLILVGDPVQLPPTIFSKQGADC 1377
Query: 601 GLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFP 660
GL SLFERL + L QYRMHP S+F S FY GTL++G ++ + F
Sbjct: 1378 GLKISLFERLAK-SIDVQFLNTQYRMHPVTSKFISEEFYNGTLKDGENVSIDSYNNCKFH 1436
Query: 661 WPVPNRPM-FFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQI--GVITP 717
+ PM FF + +++ S +N+ E V ++ + ++ G+ITP
Sbjct: 1437 FDPSFGPMKFFDLPKSNQKVIKK--SIMNQDEIDKVFTLIKELIEKYPECKKLSFGIITP 1494
Query: 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
Y+ Q I ++R+ L I V+++D QG EKD II+SCVRS E
Sbjct: 1495 YKLQMNQIKEQLNRSE--HHNL--NISVSTIDGVQGSEKDIIIMSCVRSIE 1541
Score = 133 (51.9 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 30/66 (45%), Positives = 47/66 (71%)
Query: 390 ELNASQVFAVKSVL-QRPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVCAPSNVAV 447
+LN SQ+ A+KS L + I+LIQGPPGTGKT T + + +A + ++LVC PS+ +V
Sbjct: 1192 KLNESQLNAIKSSLVESGITLIQGPPGTGKTTTINYLLSVLLAIDKKFKILVCGPSHASV 1251
Query: 448 DQLAEK 453
D++A++
Sbjct: 1252 DEVAKR 1257
>DICTYBASE|DDB_G0268660 [details] [associations]
symbol:DDB_G0268660 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268660
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 InterPro:IPR002058
ProtClustDB:CLSZ2429765 RefSeq:XP_646847.2
ProteinModelPortal:Q55F23 EnsemblProtists:DDB0304625 GeneID:8616530
KEGG:ddi:DDB_G0268660 InParanoid:Q55F23 Uniprot:Q55F23
Length = 2314
Score = 339 (124.4 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 97/275 (35%), Positives = 146/275 (53%)
Query: 498 KLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCT--CVGAGDPRLANFRFRQV 555
KLQ + + +S D+ A +EI ++A+++ T G+G R +NF+ V
Sbjct: 1482 KLQNISPDCHRISPYDKTP------AQRKEIIRNANIVFSTLSASGSGSVR-SNFKANIV 1534
Query: 556 LIDESTQATEPECLIPLVLG-AKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG 614
L+DESTQ++EP LIPL +G ++++LVGD QL P I +A GL SLFERL +
Sbjct: 1535 LVDESTQSSEPASLIPLCIGNIEKLILVGDPLQLPPTIFSSGSAENGLNISLFERLSKV- 1593
Query: 615 LKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQ 673
P+ L QYRMHP++S FPSN FY+ L +G + + +F + P+ FY
Sbjct: 1594 -LPVEMLNTQYRMHPTISRFPSNQFYKDRLLDGDNVKSLVYNQHNFHSDIKYGPIRFYDV 1652
Query: 674 MGQEEISASGTSYLNRTEAANVEKIVTTFLRS--GVVPSQIGVITPYEGQRAYIVNYMSR 731
+ +E S S N+ E V ++ ++ G+ITPY+ Q++ I +
Sbjct: 1653 IDSKEESGK-RSLKNKLEITMVFTLIKKLVQDYPECKKFSFGIITPYKLQKSEI---KEQ 1708
Query: 732 NGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ L IE +++D QG EKD IILSCVRS
Sbjct: 1709 HKQFNYPL--NIETSTIDGVQGSEKDIIILSCVRS 1741
Score = 152 (58.6 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 45/132 (34%), Positives = 73/132 (55%)
Query: 324 DINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRF 383
DI H V ST+F R A + F +T ++ + L + + M R +P
Sbjct: 1332 DILHFIKVS---NSTTFIRELEATEEFKNSKTLLNQILQPSLEVYNLMTSM-RMEIPSLL 1387
Query: 384 GAPGLPELNASQVFAVKSVLQRP-ISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCA 441
+ + ELNASQ A+++ L + I+LIQGPPGTGKT T ++ +A + ++LVC
Sbjct: 1388 RSICIQELNASQFNAIETSLSKKGITLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCG 1447
Query: 442 PSNVAVDQLAEK 453
PS+ +VD++A++
Sbjct: 1448 PSHASVDEVAKR 1459
Score = 37 (18.1 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 170 NSRGNTSGSHIVNHLVRAK 188
N NT G+ I +HL+ K
Sbjct: 530 NIESNTIGTLIESHLIYIK 548
>UNIPROTKB|F1MHU8 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051260 "protein homooligomerization" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0032797 "SMN complex" evidence=IEA] [GO:0032575 "ATP-dependent
5'-3' RNA helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00154 SMART:SM00382 SMART:SM00393
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0051260 GO:GO:0043022
GO:GO:0000049 InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GO:GO:0032797 GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:DAAA02063651 IPI:IPI01017505
RefSeq:XP_003584325.1 RefSeq:XP_003588118.1 UniGene:Bt.103594
Ensembl:ENSBTAT00000044489 GeneID:618606 KEGG:bta:618606
Uniprot:F1MHU8
Length = 981
Score = 414 (150.8 bits), Expect = 2.2e-35, P = 2.2e-35
Identities = 141/408 (34%), Positives = 207/408 (50%)
Query: 389 PELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAV 447
P L+ASQ AV L Q+ +++I GPPGTGKT T I+ K+G +VL CAPSNVAV
Sbjct: 187 PALDASQQEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKRGS-KVLCCAPSNVAV 245
Query: 448 DQLAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELH 497
D L E+++ +++RL +R +AV + + + +R D + +
Sbjct: 246 DNLVERLAQWKQRILRLGHPARLLDSIQQHSLDAVLARSDSARIVADIRR-DIDQAWAKN 304
Query: 498 KLQQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAG-D-PR--LANF 550
+ Q K E+ + K LK E + +S A V+ T GA D P L +
Sbjct: 305 RKTQDKREKSNFRDEIKLLRKELKDREEAAMLESLAAASVVLATNTGASADGPLKLLPDS 364
Query: 551 RFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERL 610
F V+IDE QA E C IPL L A++ +L GDH QL P I+ KAA AGL+ SL ERL
Sbjct: 365 HFDMVVIDECAQALEASCWIPL-LKARKCILAGDHKQLPPTIVSHKAALAGLSLSLMERL 423
Query: 611 VLL-GLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINE---RQSSGI------DF 659
G +R L VQYRMH +++ + S + Y G L ++ R G+
Sbjct: 424 AERHGAGALRMLTVQYRMHQAIARWASEALYHGQLTAHPSVAGHLLRDLPGVAATEETGV 483
Query: 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYE 719
P + + +++ +++ + G R +V+ +V +GV + I VITPY
Sbjct: 484 PLLLVDTAGCGLLELEEDDEQSKGNPGEVRLVGLHVQALVD----AGVRAADIAVITPYN 539
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
Q V+ + ++ A R E+E+ SVD FQGREK+ +ILS VRSN
Sbjct: 540 LQ----VDLLRQSLAHR---LPELEIRSVDGFQGREKEAVILSFVRSN 580
>UNIPROTKB|E2R760 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IEA] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0032797 "SMN complex" evidence=IEA] [GO:0032575
"ATP-dependent 5'-3' RNA helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154 SMART:SM00382
SMART:SM00393 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0051260
GO:GO:0043022 GO:GO:0000049 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 GO:GO:0032797 GeneTree:ENSGT00700000104572
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575
PANTHER:PTHR10887:SF23 EMBL:AAEX03011604 Ensembl:ENSCAFT00000038980
NextBio:20858044 Uniprot:E2R760
Length = 992
Score = 414 (150.8 bits), Expect = 2.3e-35, P = 2.3e-35
Identities = 172/570 (30%), Positives = 259/570 (45%)
Query: 230 VLLCREPCLNMMKESQSKDNVTIRWDIGLNKKR-VAYFVFPKEDNELRLVPGDELRLRYS 288
VL R CL ++ S + + R + L +R + V P GD + L
Sbjct: 39 VLQSRGVCLLKLQVSSQRTGLYGRLLVTLEPRRCTSAAVLPSNS----FTSGDIVGLYDE 94
Query: 289 GDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINH----GFSVDFVWKSTSFDRMQ 344
G+ + G + ++T Q V + AS + ++ + + + ++ R++
Sbjct: 95 GNQL-----ATGILTRIT-QRSVTVAFDASHDFQLSLDRDRERAYRLLKLANDITYKRLK 148
Query: 345 GAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVL- 403
A+ T + + + L G NT P F L +ASQ AV L
Sbjct: 149 KALITLKKYHSGPASSLIEVLFGGSAP-SPASNTEPPLFCNTSL---DASQKEAVSFALS 204
Query: 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 463
Q+ +++I GPPGTGKT T I+ +QG +VL CAPSN+AVD L E+++ K++R
Sbjct: 205 QKELAIIHGPPGTGKTTTVVEIILQAVRQGL-KVLCCAPSNIAVDNLVERLARCKQKILR 263
Query: 464 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK--------LQQLKDEQGELSSSDEK 515
L +R + S +H R + +++ K +Q +D + + S +E
Sbjct: 264 LGHPAR-LLESIQQHSLDAVLARSDNAQIVADIRKDIDQAFVNNRQTQDRREKSSVWNEV 322
Query: 516 KY--KALKRATEREISQS---ADVICCTCVGAGD--PR--LANFRFRQVLIDESTQATEP 566
K K LK E + +S A V+ T GA P L + F V+IDE QA E
Sbjct: 323 KLLRKELKEREEAAMLESLTSAAVVLATNTGASSDGPLKLLPDTHFDVVVIDECAQALEA 382
Query: 567 ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL-GLKPIR-LQVQY 624
C IPL L A++ +L GDH QL P + KAA AGL+ SL ERL G + +R L VQY
Sbjct: 383 SCWIPL-LKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEHGARVVRTLTVQY 441
Query: 625 RMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR----PMFFY--VQMGQEE 678
RMH ++ + S + Y G L ++ D P P+ G E
Sbjct: 442 RMHQAIMRWASEALYHGQLTAHPSVAGHLLR--DLPGVAATEETGIPLLLVDTAGCGLFE 499
Query: 679 ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQ 737
+ S N E V + + +GV S I VITPY Q V+ + ++ A R
Sbjct: 500 LEDDDDQSKGNPGEVRLVSLHIQALVDAGVQASDIAVITPYNLQ----VDLLRQSLAHR- 554
Query: 738 QLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ E+E+ SVD FQGREK+ ++LS VRSN
Sbjct: 555 --HPELEIKSVDGFQGREKEAVVLSFVRSN 582
>POMBASE|SPAC6G9.10c [details] [associations]
symbol:sen1 "ATP-dependent 5' to 3' DNA/RNA helicase
Sen1" species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=ISO] [GO:0006369
"termination of RNA polymerase II transcription" evidence=ISO]
[GO:0008033 "tRNA processing" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016180 "snRNA
processing" evidence=ISO] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0035649 "Nrd1 complex"
evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0043144 "snoRNA processing"
evidence=ISO] InterPro:IPR024714 PomBase:SPAC6G9.10c GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006397
GO:GO:0008033 eggNOG:COG1112 GO:GO:0006364 GO:GO:0006369
GO:GO:0043144 GO:GO:0043141 GO:GO:0016180 KO:K10706 GO:GO:0035649
PIR:T39072 RefSeq:NP_594119.1 ProteinModelPortal:Q92355
EnsemblFungi:SPAC6G9.10c.1 GeneID:2541556 KEGG:spo:SPAC6G9.10c
OrthoDB:EOG4BCHWF NextBio:20802652 GO:GO:0032575 InterPro:IPR024481
PANTHER:PTHR10887:SF164 Pfam:PF12726 Uniprot:Q92355
Length = 1687
Score = 363 (132.8 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 102/292 (34%), Positives = 155/292 (53%)
Query: 494 SELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN--FR 551
+E + +Q +E S + K+ L++ ++ I + ADV+C T G+G +A+
Sbjct: 1312 NEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDLVAHSSLN 1371
Query: 552 FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
F V+IDE+ QA E + +IPL GAK+ +LVGD QL P ++ KKAA +QSLF R+
Sbjct: 1372 FSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQ 1431
Query: 612 L-LGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFF 670
+ L +QYRMHP +S FPS FY+ L++G + E+ W V P F
Sbjct: 1432 KNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQ----VWHV--NPKFT 1485
Query: 671 YVQM----GQEEISASGTSY-LNRTE-AAN-VEKIVTTFLRSGVVPSQIGVITPYEGQ-- 721
++ G+E S + ++Y L E N V++++ F +IGVITPY Q
Sbjct: 1486 QYRLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFT-GRIGVITPYRSQLH 1544
Query: 722 ---RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS-NEH 769
RA+ V Y G + I++ +VD FQG+EKD I SCV+S ++H
Sbjct: 1545 ELRRAFKVKY----G---KSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKH 1589
Score = 83 (34.3 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 26/85 (30%), Positives = 37/85 (43%)
Query: 347 MKTFAVDETSVSGYIYHHLLGHEVEV----QMVRNTLPRRFGAPGLPELNASQVFAVKSV 402
+ TF + G Y HL + Q V+++ A ++N Q A+
Sbjct: 1082 LATFTRQYAGIRGLPYFHLADDIIRARPCSQPVKHSSSEIKAAMKRYQVNEPQAKAIMCA 1141
Query: 403 LQRP-ISLIQGPPGTGKTVTSAAIV 426
L +LIQGPPGTGKT T I+
Sbjct: 1142 LDNNGFTLIQGPPGTGKTKTIIGII 1166
Score = 74 (31.1 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 432 QGQGQVLVCAPSNVAVDQLAEKISA-----TGLKVVRLCAK--SREAVSSPVEHLTLHYQ 484
+ + Q+L+CAPSN AVD++ ++ G K + + + E ++ V L+L YQ
Sbjct: 1189 ESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVVRIGNPETINVSVRDLSLEYQ 1248
Query: 485 VRH--LDTSEKS-ELHKLQQL 502
L+ ++ + +L LQ+L
Sbjct: 1249 TEKQLLEVNQGAIDLGSLQEL 1269
>UNIPROTKB|E2R8W1 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00154 SMART:SM00382 SMART:SM00393
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10
CTD:3508 OMA:HARQRIS PANTHER:PTHR10887:SF23 EMBL:AAEX03011604
RefSeq:XP_540807.2 Ensembl:ENSCAFT00000017093 GeneID:483686
KEGG:cfa:483686 Uniprot:E2R8W1
Length = 1010
Score = 414 (150.8 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 172/570 (30%), Positives = 259/570 (45%)
Query: 230 VLLCREPCLNMMKESQSKDNVTIRWDIGLNKKR-VAYFVFPKEDNELRLVPGDELRLRYS 288
VL R CL ++ S + + R + L +R + V P GD + L
Sbjct: 39 VLQSRGVCLLKLQVSSQRTGLYGRLLVTLEPRRCTSAAVLPSNS----FTSGDIVGLYDE 94
Query: 289 GDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINH----GFSVDFVWKSTSFDRMQ 344
G+ + G + ++T Q V + AS + ++ + + + ++ R++
Sbjct: 95 GNQL-----ATGILTRIT-QRSVTVAFDASHDFQLSLDRDRERAYRLLKLANDITYKRLK 148
Query: 345 GAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVL- 403
A+ T + + + L G NT P F L +ASQ AV L
Sbjct: 149 KALITLKKYHSGPASSLIEVLFGGSAP-SPASNTEPPLFCNTSL---DASQKEAVSFALS 204
Query: 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 463
Q+ +++I GPPGTGKT T I+ +QG +VL CAPSN+AVD L E+++ K++R
Sbjct: 205 QKELAIIHGPPGTGKTTTVVEIILQAVRQGL-KVLCCAPSNIAVDNLVERLARCKQKILR 263
Query: 464 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK--------LQQLKDEQGELSSSDEK 515
L +R + S +H R + +++ K +Q +D + + S +E
Sbjct: 264 LGHPAR-LLESIQQHSLDAVLARSDNAQIVADIRKDIDQAFVNNRQTQDRREKSSVWNEV 322
Query: 516 KY--KALKRATEREISQS---ADVICCTCVGAGD--PR--LANFRFRQVLIDESTQATEP 566
K K LK E + +S A V+ T GA P L + F V+IDE QA E
Sbjct: 323 KLLRKELKEREEAAMLESLTSAAVVLATNTGASSDGPLKLLPDTHFDVVVIDECAQALEA 382
Query: 567 ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL-GLKPIR-LQVQY 624
C IPL L A++ +L GDH QL P + KAA AGL+ SL ERL G + +R L VQY
Sbjct: 383 SCWIPL-LKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEHGARVVRTLTVQY 441
Query: 625 RMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR----PMFFY--VQMGQEE 678
RMH ++ + S + Y G L ++ D P P+ G E
Sbjct: 442 RMHQAIMRWASEALYHGQLTAHPSVAGHLLR--DLPGVAATEETGIPLLLVDTAGCGLFE 499
Query: 679 ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQ 737
+ S N E V + + +GV S I VITPY Q V+ + ++ A R
Sbjct: 500 LEDDDDQSKGNPGEVRLVSLHIQALVDAGVQASDIAVITPYNLQ----VDLLRQSLAHR- 554
Query: 738 QLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ E+E+ SVD FQGREK+ ++LS VRSN
Sbjct: 555 --HPELEIKSVDGFQGREKEAVVLSFVRSN 582
>UNIPROTKB|Q60560 [details] [associations]
symbol:IGHMBP2 "DNA-binding protein SMUBP-2" species:10036
"Mesocricetus auratus" [GO:0000049 "tRNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA helicase
activity" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0043621 "protein self-association"
evidence=ISS] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0030424 GO:GO:0008270 GO:GO:0006351
GO:GO:0043621 GO:GO:0043022 GO:GO:0030529 GO:GO:0000049
InterPro:IPR014001 SMART:SM00487 GO:GO:0043141 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 HOVERGEN:HBG077019
PANTHER:PTHR10887:SF23 EMBL:L15625 PIR:T48845
ProteinModelPortal:Q60560 SMR:Q60560 Uniprot:Q60560
Length = 989
Score = 413 (150.4 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 139/404 (34%), Positives = 195/404 (48%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG ++L CAPSNVAVD
Sbjct: 191 LDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGL-KILCCAPSNVAVDN 249
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + ++ + +R D + +K
Sbjct: 250 LVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRK-DIDQVFGKNKK 308
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAGD--PR--LANFRF 552
Q K E+ + + K LK E I QS ADV+ T GA P L F
Sbjct: 309 TQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHF 368
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V++DE QA E C IPL L A + +L GDH QL P + KAA AGL++SL ERLV
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVE 427
Query: 613 L-GLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR---- 666
G +R L VQYRMH +++ + S + Y G L ++ D P
Sbjct: 428 KHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLK--DLPGVADTEETSV 485
Query: 667 PMFFY--VQMGQEEISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRA 723
P+ G E+ + S N E V + + +GV I VI PY Q
Sbjct: 486 PLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVD 545
Query: 724 YIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ +S + E+E+ SVD FQGREK+ +IL+ VRSN
Sbjct: 546 LLRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSN 582
>SGD|S000001500 [details] [associations]
symbol:HCS1 "Hexameric DNA polymerase alpha-associated DNA
helicase A" species:4932 "Saccharomyces cerevisiae" [GO:0003677
"DNA binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0033203 "DNA helicase A
complex" evidence=IDA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 SGD:S000001500 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 EMBL:BK006944 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:X74152 GO:GO:0006273 GO:GO:0043141
HOGENOM:HOG000185831 OrthoDB:EOG444PTN GO:GO:0033203 EMBL:Z28017
PIR:S34700 RefSeq:NP_012908.1 ProteinModelPortal:P34243 SMR:P34243
DIP:DIP-1383N IntAct:P34243 MINT:MINT-399891 STRING:P34243
PaxDb:P34243 EnsemblFungi:YKL017C GeneID:853852 KEGG:sce:YKL017C
CYGD:YKL017c GeneTree:ENSGT00700000104572 OMA:QGGDFPE
SABIO-RK:P34243 NextBio:975085 Genevestigator:P34243
GermOnline:YKL017C TIGRFAMs:TIGR00376 Uniprot:P34243
Length = 683
Score = 292 (107.8 bits), Expect = 3.5e-35, Sum P(2) = 3.5e-35
Identities = 94/246 (38%), Positives = 134/246 (54%)
Query: 549 NFR-FRQVLIDESTQATEPECLIPLVLGAKQ---VVLVGDHCQLGPVIMCK--KAARAGL 602
NF+ F ++IDE +QA EP+C IPL+ Q +VL GD+ QL P I + K L
Sbjct: 385 NFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNL 444
Query: 603 AQSLFERLVLLGLKP--IR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659
+LF+R++ + K ++ L VQYRM+ + EFPS+S Y G L T+ R ID
Sbjct: 445 ETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLL--IDL 502
Query: 660 PW--PVPNR-------PMFFYVQMGQE------EISASGTSYLNRTEAANVEKIVTTFLR 704
P P+ P+ +Y G E E + G+ Y N E A V++ + LR
Sbjct: 503 PTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKY-NEGEIAIVKEHIEN-LR 560
Query: 705 SGVVP-SQIGVITPYEGQRAYIVNYMSRNGALRQQL-YKEIEVASVDSFQGREKDYIILS 762
S VP + IGVI+PY Q V+++ + + +L +IE+++VD FQGREKD IILS
Sbjct: 561 SFNVPENSIGVISPYNAQ----VSHLKK--LIHDELKLTDIEISTVDGFQGREKDVIILS 614
Query: 763 CVRSNE 768
VRSNE
Sbjct: 615 LVRSNE 620
Score = 170 (64.9 bits), Expect = 3.5e-35, Sum P(2) = 3.5e-35
Identities = 44/161 (27%), Positives = 84/161 (52%)
Query: 300 GHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTS---FDRMQGAMKTFAVDETS 356
G V K++ ++ + L SQ V + +S ++ K+T+ ++RM+ M+ + +
Sbjct: 117 GVVYKMS-DTQITIALEESQDVIATTFYSYSKLYILKTTNVVTYNRMESTMRKLSEISSP 175
Query: 357 VSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL-PELNASQVFAVKSVLQRPISLIQGPPG 415
+ I +L+ E + NT + L P LN SQ A+ + +++I GPPG
Sbjct: 176 IQDKIIQYLVN---ERPFIPNTNSFQNIKSFLNPNLNDSQKTAINFAINNDLTIIHGPPG 232
Query: 416 TGKTVTSAAIVYHMA-KQGQGQVLVCAPSNVAVDQLAEKIS 455
TGKT T ++ + K + ++L+C PSN++VD + E+++
Sbjct: 233 TGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILERLT 273
Score = 42 (19.8 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 488 LDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCT 538
++T K ++ K+ + D GE + YK + +S DVI T
Sbjct: 93 VNTKTKPKVKKVSE--DSNGEQAECSGVVYKMSDTQITIALEESQDVIATT 141
>UNIPROTKB|E1BY42 [details] [associations]
symbol:E1BY42 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IEA] [GO:0032797 "SMN complex"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51061 SMART:SM00382 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0051260
GO:GO:0043022 GO:GO:0000049 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 GO:GO:0032797 GeneTree:ENSGT00700000104572
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:AADN02040052 EMBL:AADN02040053
IPI:IPI00595444 Ensembl:ENSGALT00000006901 Uniprot:E1BY42
Length = 976
Score = 411 (149.7 bits), Expect = 4.8e-35, P = 4.8e-35
Identities = 139/405 (34%), Positives = 200/405 (49%)
Query: 391 LNASQVFAVK-SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ASQ AV S+ Q+ ++++ GPPGTGKT T I+ +QG +VL CAPSNVAVD
Sbjct: 188 LDASQREAVSFSLAQKELAIVHGPPGTGKTTTVVEIILQAVQQGL-KVLCCAPSNVAVDN 246
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + + + VR D + K
Sbjct: 247 LVERLAGYKARILRLGHPARLLEPIQQHSLDAVLARSDSAQIVADVRK-DIDQAFAKSKK 305
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGA---GDPRLA--NFR 551
Q K E+G S + K LK E ++ + A V+ T GA G +L N+
Sbjct: 306 AQDKGERGHFLSEIKALRKELKEREETAMTAALTHASVVLATNTGASSDGPLKLLPENY- 364
Query: 552 FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
F V+IDE QA E C IPL L A + +L GDH QL P I+ KAA GL+ SL ER++
Sbjct: 365 FDLVVIDECAQALEASCWIPL-LKAPKCILAGDHKQLPPTIISHKAAAKGLSLSLMERVI 423
Query: 612 -LLGLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR--- 666
G K ++ L VQYRMH ++ ++ S+ Y G L ++ + D P
Sbjct: 424 ERYGEKVVKMLTVQYRMHEAIMQWASSEMYGGRLTAHPSVAQHLLK--DLPGVTCTEETT 481
Query: 667 -PMFFY--VQMGQEEISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQR 722
P+ G E+ S N E V + + +GV + V+ PY Q
Sbjct: 482 IPLLLIDTAGCGLLELEVEDEQSKGNPGEVQLVGLHIQALVDAGVKARDVAVVAPYNLQ- 540
Query: 723 AYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
V+ + + R Y E+E+ SVD FQGREK+ +ILS VRSN
Sbjct: 541 ---VDMLREHLCHR---YPELEIKSVDGFQGREKEAVILSFVRSN 579
>DICTYBASE|DDB_G0268914 [details] [associations]
symbol:DDB_G0268914 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
SMART:SM00382 dictyBase:DDB_G0268914 GO:GO:0005524
EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112 RefSeq:XP_647058.1
ProteinModelPortal:Q55EG2 EnsemblProtists:DDB0190122 GeneID:8616757
KEGG:ddi:DDB_G0268914 InParanoid:Q55EG2 OMA:ANCRVEN Uniprot:Q55EG2
Length = 4540
Score = 335 (123.0 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 94/257 (36%), Positives = 136/257 (52%)
Query: 521 KRATEREISQSADVICCTCVGAGDPRLANFRFRQ--VLIDESTQATEPECLIPLVLGAK- 577
+R E+++ IC + + A L F+ V++DE+TQ+ E C+IPL LGAK
Sbjct: 3660 RRLDEKKMILEHSSICFSTLSASGSNLVQSSFKPNVVIVDEATQSCETSCIIPLSLGAKS 3719
Query: 578 --QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPS 635
+++LVGD QL P I K++ GL SLFERL + L L VQYRMHP +S+FPS
Sbjct: 3720 MKKLILVGDPVQLPPTIFSKESIHCGLGISLFERLSKV-LPVSMLNVQYRMHPLISKFPS 3778
Query: 636 NSFYEGTLQNGVTINERQSSGIDFPWPVPNRPM-FFYVQMGQEEISASGTSYLNRTEAAN 694
+ FY L++G + + + F + FF V +EE TS N+ E
Sbjct: 3779 SQFYHDILKDGDNVVSSDAYSLRFHENQDYGAIRFFDVTDSREE--RGKTSIKNQLEITM 3836
Query: 695 VEKIVTTFLRSGVVPSQ--IGVITPYEGQRAYIVN-YMSRNGALRQQLYKEIEVASVDSF 751
V ++ + Q G++TPY+ QR I + Y N +L IE+ ++DSF
Sbjct: 3837 VFTLIKKLTQDHPETKQYSFGIVTPYKLQRKEIEDAYKQLNLSLN------IEIKTIDSF 3890
Query: 752 QGREKDYIILSCVRSNE 768
QG EKD +I+SCVR NE
Sbjct: 3891 QGSEKDIMIMSCVR-NE 3906
Score = 142 (55.0 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 391 LNASQVFAV-KSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCAPSNVAVD 448
LN SQ+ A+ +S++ I+LIQGPPGTGKT T +++ +A ++LVC PS+ AVD
Sbjct: 3556 LNESQLAAINESLVHSSITLIQGPPGTGKTHTITSLISIILAINPDFKILVCGPSHAAVD 3615
Query: 449 QLAEKISATGL 459
++A+++ GL
Sbjct: 3616 EVAKRVIIKGL 3626
Score = 47 (21.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 486 RHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKA 519
R+ EK E K LKD + E+ D Y+A
Sbjct: 1439 RNRSLEEKVETIKRNALKDIKKEIGGLDSNLYRA 1472
Score = 43 (20.2 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 472 VSSPVEHLTLHYQ-VRH---LDTSEKSELHKLQQLKDEQGEL 509
++S + +LTL Q ++ + ++ + + QQ ++EQG L
Sbjct: 1353 INSKINNLTLQQQKIQSNGLIQQQQQQQQQEQQQQEEEQGSL 1394
>RGD|68325 [details] [associations]
symbol:Ighmbp2 "immunoglobulin mu binding protein 2" species:10116
"Rattus norvegicus" [GO:0000049 "tRNA binding" evidence=IEA;ISO;ISS]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0001078 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in negative regulation of
transcription" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;ISO;IDA] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008134 "transcription factor binding"
evidence=IEA;ISO] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation" evidence=ISO]
[GO:0030424 "axon" evidence=IEA;ISO] [GO:0030426 "growth cone"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO] [GO:0032575 "ATP-dependent 5'-3' RNA helicase
activity" evidence=IEA;ISO;ISS] [GO:0032797 "SMN complex"
evidence=IEA;ISO] [GO:0043022 "ribosome binding"
evidence=IEA;ISO;ISS] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA;ISO;ISS] [GO:0043621 "protein self-association"
evidence=ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] [GO:0051260 "protein homooligomerization"
evidence=IEA;ISO] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 RGD:68325 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0030424 GO:GO:0001078 GO:GO:0008270 GO:GO:0051260
GO:GO:0043621 GO:GO:0043022 GO:GO:0030529 GO:GO:0000049
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GO:GO:0032797 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OrthoDB:EOG4GHZNJ
PANTHER:PTHR10887:SF23 EMBL:AF199411 IPI:IPI00190206
RefSeq:NP_113774.1 UniGene:Rn.23984 HSSP:P38935
ProteinModelPortal:Q9EQN5 SMR:Q9EQN5 STRING:Q9EQN5 PRIDE:Q9EQN5
GeneID:29532 KEGG:rno:29532 UCSC:RGD:68325 InParanoid:Q9EQN5
NextBio:609508 ArrayExpress:Q9EQN5 Genevestigator:Q9EQN5
Uniprot:Q9EQN5
Length = 988
Score = 407 (148.3 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 138/404 (34%), Positives = 194/404 (48%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG +VL CAPSN+AVD
Sbjct: 191 LDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDN 249
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + ++ + +R D + +K
Sbjct: 250 LVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRR-DIDQVFGKNKK 308
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAGD--PR--LANFRF 552
Q K E+ + + K LK E I QS ADV+ T GA P L F
Sbjct: 309 TQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYF 368
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V++DE QA E C IPL L A + +L GDH QL P + KAA AGL++SL ERL
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAE 427
Query: 613 L-GLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR---- 666
G +R L VQYRMH +++ + S + Y G L ++ D P
Sbjct: 428 KHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLK--DLPGVADTEETSV 485
Query: 667 PMFFY--VQMGQEEISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRA 723
P+ G E+ + S N E V + + +GV I VI PY Q
Sbjct: 486 PLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVD 545
Query: 724 YIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ +S + E+E+ SVD FQGREK+ +IL+ VRSN
Sbjct: 546 LLRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSN 582
>UNIPROTKB|Q9EQN5 [details] [associations]
symbol:Ighmbp2 "DNA-binding protein SMUBP-2" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154 SMART:SM00382
SMART:SM00393 RGD:68325 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0030424 GO:GO:0001078
GO:GO:0008270 GO:GO:0051260 GO:GO:0043621 GO:GO:0043022
GO:GO:0030529 GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0043141 GO:GO:0032797 HOGENOM:HOG000185831
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508
OrthoDB:EOG4GHZNJ PANTHER:PTHR10887:SF23 EMBL:AF199411
IPI:IPI00190206 RefSeq:NP_113774.1 UniGene:Rn.23984 HSSP:P38935
ProteinModelPortal:Q9EQN5 SMR:Q9EQN5 STRING:Q9EQN5 PRIDE:Q9EQN5
GeneID:29532 KEGG:rno:29532 UCSC:RGD:68325 InParanoid:Q9EQN5
NextBio:609508 ArrayExpress:Q9EQN5 Genevestigator:Q9EQN5
Uniprot:Q9EQN5
Length = 988
Score = 407 (148.3 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 138/404 (34%), Positives = 194/404 (48%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG +VL CAPSN+AVD
Sbjct: 191 LDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDN 249
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + ++ + +R D + +K
Sbjct: 250 LVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRR-DIDQVFGKNKK 308
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAGD--PR--LANFRF 552
Q K E+ + + K LK E I QS ADV+ T GA P L F
Sbjct: 309 TQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYF 368
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V++DE QA E C IPL L A + +L GDH QL P + KAA AGL++SL ERL
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAE 427
Query: 613 L-GLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR---- 666
G +R L VQYRMH +++ + S + Y G L ++ D P
Sbjct: 428 KHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLK--DLPGVADTEETSV 485
Query: 667 PMFFY--VQMGQEEISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRA 723
P+ G E+ + S N E V + + +GV I VI PY Q
Sbjct: 486 PLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVD 545
Query: 724 YIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ +S + E+E+ SVD FQGREK+ +IL+ VRSN
Sbjct: 546 LLRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSN 582
>UNIPROTKB|Q9BYK8 [details] [associations]
symbol:HELZ2 "Helicase with zinc finger domain 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] Reactome:REACT_111217
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 PROSITE:PS50157
SMART:SM00355 SMART:SM00382 SMART:SM00955 GO:GO:0005524
Reactome:REACT_111045 GO:GO:0005654 GO:GO:0044281 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0044255
GO:GO:0006351 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
GO:GO:0030374 eggNOG:COG0557 InterPro:IPR022966 EMBL:AL121829
EMBL:AF517673 EMBL:AB201715 EMBL:AB051556 EMBL:AK074171
EMBL:AK055611 IPI:IPI00249304 IPI:IPI00249305 IPI:IPI00736631
RefSeq:NP_001032412.2 RefSeq:NP_208384.3 UniGene:Hs.517180
ProteinModelPortal:Q9BYK8 IntAct:Q9BYK8 STRING:Q9BYK8
PhosphoSite:Q9BYK8 DMDM:209572784 PaxDb:Q9BYK8 PRIDE:Q9BYK8
GeneID:85441 KEGG:hsa:85441 UCSC:uc002yfl.1 UCSC:uc002yfm.2
CTD:85441 GeneCards:GC20M062189 HGNC:HGNC:30021 HPA:HPA051267
MIM:611265 neXtProt:NX_Q9BYK8 HOGENOM:HOG000231856
HOVERGEN:HBG080465 InParanoid:Q9BYK8 OMA:FRAAHIM PhylomeDB:Q9BYK8
GenomeRNAi:85441 NextBio:76020 ArrayExpress:Q9BYK8 Bgee:Q9BYK8
Genevestigator:Q9BYK8 GermOnline:ENSG00000130589
PANTHER:PTHR10887:SF16 Uniprot:Q9BYK8
Length = 2649
Score = 333 (122.3 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 108/317 (34%), Positives = 160/317 (50%)
Query: 463 RLCAKS-REA-VSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKY--K 518
+L KS RE + + +TLH+++R SE+ K + ++GEL S ++ + K
Sbjct: 2263 KLLRKSPREGRPNQSLRSITLHHRIRQAPNPYSSEI-KAFDTRLQRGELFSREDLVWYKK 2321
Query: 519 ALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVL--GA 576
L A + E+ + +VI CTC A L RQ+L+DE+ ATEPE LIPLV A
Sbjct: 2322 VLWEARKFELDRH-EVILCTCSCAASASLKILDVRQILVDEAGMATEPETLIPLVQFPQA 2380
Query: 577 KQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
++VVL+GDH QL PV+ ++ GL +SLFER L QYRMH + FPS
Sbjct: 2381 EKVVLLGDHKQLRPVVKNERLQNLGLDRSLFERY---HEDAHMLDTQYRMHEGICAFPSV 2437
Query: 637 SFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVE 696
+FY+ L+ + R S + +F +VQ G E T N AN+E
Sbjct: 2438 AFYKSKLKTWQGLR-RPPSVLGHAGKESCPVIFGHVQ-GHERSLLVSTDEGNENSKANLE 2495
Query: 697 KI-----VTTFLRSG--VVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD 749
++ +T L G V P I V+TPY Q + I + ALR++ + V+S+
Sbjct: 2496 EVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEI------SKALRREGIAGVAVSSIT 2549
Query: 750 SFQGREKDYIILSCVRS 766
QG E Y+++S VR+
Sbjct: 2550 KSQGSEWRYVLVSTVRT 2566
Score = 161 (61.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 108/410 (26%), Positives = 173/410 (42%)
Query: 379 LPRRFGAPGLPELNASQVFAVKSVLQRPISLIQG-PPGTGKTVTSAAIVYHMAKQGQGQV 437
LPR + P L N Q AV +LI G PG G+ V ++Y G G+
Sbjct: 503 LPRPWSVPPLRRGNRKQELAV--------ALIAGWGPGDGRRVPPL-LIY--GPFGTGKT 551
Query: 438 LVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV-EHLTLHYQVRHLDTSEKSEL 496
A +++ V + E KV+ +C + A + E+ H H + + +
Sbjct: 552 YTLAMASLEVIRRPET------KVL-ICTHTNSAADIYIREYFHSHVSGGHPEATPLRVM 604
Query: 497 HKLQQLKDEQGELSS----SDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRF 552
+ + L +D+++ A + T E+++ V+ T A + R+ F
Sbjct: 605 YTDRPLSQTDPVTLQYCCLTDDRQ--AFRPPTRAELARHR-VVVTTTSQARELRVPVGFF 661
Query: 553 RQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERL 610
+LIDE+ Q E E L PL + ++VL GDH Q+ P + ARA +L RL
Sbjct: 662 SHILIDEAAQMLECEALTPLAYASHGTRLVLAGDHMQVTPRLFSVARARAA-EHTLLHRL 720
Query: 611 VLLG-------LKPIRL--QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPW 661
L + RL YR ++ F S FY + G I+ R G P
Sbjct: 721 FLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRHFY---VAKGNPIHAR---GKVPPH 774
Query: 662 PVPNRPMFFYVQMGQEEISASGTSYLNRTEAANV-EKIVTTFLRSGVVPSQIGVITPYEG 720
P + P+ F G + S S+LN E A V EK+ + PS G E
Sbjct: 775 P-RHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVVEKVQEAY---NTWPSCWG---GREQ 827
Query: 721 QRAYIVNYMSRNGALRQQLYK-EIEVASVDSFQ---GREKDYIILSCVRS 766
+ +V++ ++ ALRQ+L + ++ SV SF+ GR+ ++LS V +
Sbjct: 828 RCICVVSHGAQVSALRQELRRRDLGQVSVGSFEILPGRQFRVVVLSTVHT 877
Score = 127 (49.8 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 366 LGHEVEVQMVRNTLPRRF------GAPG-LPELNASQVFAVKSVLQRPISLIQGPPGTGK 418
LG V + R +P RF PG +LN SQ AV+ L++P ++IQGPPGTGK
Sbjct: 2122 LGRPVPQPLCR-VIPSRFLERQTYNIPGGRHKLNPSQNVAVREALEKPFTVIQGPPGTGK 2180
Query: 419 TVTSAAIVYHMAKQGQGQV 437
T+ IV+ K Q QV
Sbjct: 2181 TIVGLHIVFWFHKSNQEQV 2199
Score = 60 (26.2 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 437 VLVCAPSNVAVDQLAEKI-SATGLKVVRLCAKSREAVSSPV 476
+L C PSN +VD LA + LK +R+ ++ EA PV
Sbjct: 2216 ILYCGPSNKSVDVLAGLLLRRMELKPLRVYSEQAEASEFPV 2256
>UNIPROTKB|G5EA02 [details] [associations]
symbol:C4orf21 "Uncharacterized protein C4orf21"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
EMBL:CH471057 InterPro:IPR018838 Pfam:PF10382 UniGene:Hs.713663
RefSeq:NP_060862.3 UniGene:Hs.380346 GeneID:55345 KEGG:hsa:55345
CTD:55345 GenomeRNAi:55345 NextBio:59679 EMBL:AC106864
EMBL:AC023886 PRIDE:G5EA02 Ensembl:ENST00000505019 HGNC:HGNC:25654
OMA:NTYESSG ArrayExpress:G5EA02 Bgee:G5EA02 Uniprot:G5EA02
Length = 2104
Score = 432 (157.1 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 122/378 (32%), Positives = 197/378 (52%)
Query: 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ---------GQGQ---VLVCAPSNVAVDQLAEK 453
PI++I G G GK+ A ++ + G + +L+ + +NVAVD++
Sbjct: 1648 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLG 1707
Query: 454 ISATGLK-VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512
+ + G + +R+ S ++ P+ +LH + ++ + ELH L + +D
Sbjct: 1708 LLSLGFENFIRV--GSVRKIAKPILPYSLHAGSEN-ESEQLKELHALMK-EDLTPTERVY 1763
Query: 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPL 572
K + K T R + + V+ TC P + + +F V++DE +Q TEP L+P+
Sbjct: 1764 VRKSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLKFPVVVLDECSQITEPASLLPI 1823
Query: 573 V-LGAKQVVLVGDHCQLGPVIMCKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPSL 630
++++LVGD QL P I AA GL Q+LF+RL L+G KPI L+ QYR HP++
Sbjct: 1824 ARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAI 1883
Query: 631 SEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRT 690
S ++ FY+G L NGVT ER W +P + FY G E+I S+ N
Sbjct: 1884 SAIANDLFYKGALMNGVTEIERSPL---LEW-LPT--LCFYNVKGLEQIERDN-SFHNVA 1936
Query: 691 EAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDS 750
EA K++ + + SG+ S IGVIT Y+ Q + + +S + K ++V++VD+
Sbjct: 1937 EATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDI-KTVQVSTVDA 1995
Query: 751 FQGREKDYIILSCVRSNE 768
FQG EK+ IILSCVR+ +
Sbjct: 1996 FQGAEKEIIILSCVRTRQ 2013
Score = 38 (18.4 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 238 LNMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKED 272
L MK+S+S +N ++ L++ +V P+ D
Sbjct: 1041 LEGMKKSRSLENENLQRLSLLSRTQVPLITLPRTD 1075
Score = 37 (18.1 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 95 TSSPSKRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEH 143
T+ P KR + S + SQ + A + + E ++ TEH
Sbjct: 229 TNEPVKRDSLASHYSGVSQNIRSKAQILALLKSESSSSCEELNSEMTEH 277
>MGI|MGI:99954 [details] [associations]
symbol:Ighmbp2 "immunoglobulin mu binding protein 2"
species:10090 "Mus musculus" [GO:0000049 "tRNA binding"
evidence=ISO] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001078 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in negative regulation of
transcription" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006412 "translation"
evidence=NAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IMP]
[GO:0030424 "axon" evidence=IDA] [GO:0030426 "growth cone"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032575 "ATP-dependent 5'-3' RNA helicase activity"
evidence=ISO] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043022 "ribosome binding" evidence=ISO;IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3'
DNA helicase activity" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=ISO] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154
SMART:SM00382 SMART:SM00393 MGI:MGI:99954 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0006412 GO:GO:0030424 GO:GO:0043025
GO:GO:0008270 GO:GO:0051260 GO:GO:0006351 GO:GO:0043621
GO:GO:0043022 GO:GO:0030426 GO:GO:0021522 GO:GO:0030529
GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 HOVERGEN:HBG077019
OrthoDB:EOG4GHZNJ PANTHER:PTHR10887:SF23 EMBL:L10075
IPI:IPI00113033 PIR:S35633 UniGene:Mm.3179
ProteinModelPortal:P40694 SMR:P40694 IntAct:P40694 STRING:P40694
PhosphoSite:P40694 PaxDb:P40694 PRIDE:P40694 UCSC:uc008fwa.1
InParanoid:P40694 CleanEx:MM_IGHMBP2 Genevestigator:P40694
GermOnline:ENSMUSG00000024831 Uniprot:P40694
Length = 993
Score = 404 (147.3 bits), Expect = 3.0e-34, P = 3.0e-34
Identities = 137/404 (33%), Positives = 194/404 (48%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG +VL CAPSN+AVD
Sbjct: 191 LDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDN 249
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + ++ + +R D + +K
Sbjct: 250 LVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRR-DIDQVFGKNKK 308
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAGD--PR--LANFRF 552
Q K E+G S + K LK E I QS ADV+ T GA P L F
Sbjct: 309 TQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYF 368
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V++DE QA E C IPL L A + +L GDH QL P + +AA AGL++SL ERL
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAE 427
Query: 613 L-GLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR---- 666
G +R L VQYRMH ++ + S + Y G + ++ D P
Sbjct: 428 KHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLK--DLPGVTDTEETRV 485
Query: 667 PMFFY--VQMGQEEISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRA 723
P+ G E+ + S N E V + + +GV I VI PY Q
Sbjct: 486 PLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVD 545
Query: 724 YIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ +S + E+E+ SVD FQGREK+ ++L+ VRSN
Sbjct: 546 LLRQSLSNK-------HPELEIKSVDGFQGREKEAVLLTFVRSN 582
>UNIPROTKB|E1BQD2 [details] [associations]
symbol:C4H4orf21 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AADN02009328
IPI:IPI00577016 Ensembl:ENSGALT00000019715 Uniprot:E1BQD2
Length = 913
Score = 402 (146.6 bits), Expect = 4.0e-34, P = 4.0e-34
Identities = 122/385 (31%), Positives = 202/385 (52%)
Query: 406 PISLIQGPPGTGKTVTSAAIVYHM--------AKQGQG----QVLVCAPSNVAVDQLAEK 453
PI++I G G GK+ + ++ + AK+G ++L+ + +NVAVD++
Sbjct: 466 PITIIHGVFGAGKSFLLSVVILFLVQLFESSEAKEGAELAPWKLLIASSTNVAVDRILLC 525
Query: 454 ISATGLK-VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512
+ G + +R+ S ++ + L Y + +E +L +L L E +L+ +
Sbjct: 526 LLDLGFEDFIRV--GSIRKITKAI----LPYSLHAGSGNENEQLKELLALMKE--DLAPA 577
Query: 513 DEKKY--KALKR---ATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPE 567
EK Y K+++R T + Q V+ TC P L +F V++DE +Q TEP
Sbjct: 578 -EKMYVRKSIERHKLGTNKTALQQVKVVGVTCAACPFPCLDTLKFPVVVLDECSQMTEPT 636
Query: 568 CLIPLV-LGAKQVVLVGDHCQLGPVIMCKKAARA-GLAQSLFERLVLLGLKPIRLQVQYR 625
L+P+ +++VLVGD QL P I ++ GL Q+LF+RL L+G K I L+ QYR
Sbjct: 637 SLLPIARFQCEKLVLVGDPKQLPPTIQGSESIHEKGLEQTLFDRLCLMGHKTILLRTQYR 696
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS 685
HP++S + FYEG L +GV+ ER S +D W +P + FY G E+I +
Sbjct: 697 CHPAISAIANELFYEGNLIDGVSEKER-SPLLD--W-LPT--LCFYSVNGLEQIERDNSF 750
Query: 686 YLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLY--KEI 743
Y N E K + + SG+ S +GVIT Y+ Q + N + ++ + + K +
Sbjct: 751 Y-NMAEVHFTVKFIQALIASGIDGSAVGVITFYKSQMYKLQNLLR---SIHSEAFPVKAV 806
Query: 744 EVASVDSFQGREKDYIILSCVRSNE 768
+V++VD+FQG EK+ ++LSCVR+ +
Sbjct: 807 QVSTVDAFQGAEKEIVVLSCVRTRQ 831
>ZFIN|ZDB-GENE-070402-1 [details] [associations]
symbol:setx "senataxin" species:7955 "Danio rerio"
[GO:0006302 "double-strand break repair" evidence=IEA]
InterPro:IPR026121 ZFIN:ZDB-GENE-070402-1 GO:GO:0006302
InterPro:IPR024481 Pfam:PF12726 GeneTree:ENSGT00580000081652
PANTHER:PTHR10887:SF15 EMBL:CU927918 IPI:IPI00481119
Ensembl:ENSDART00000082314 Ensembl:ENSDART00000149777
Uniprot:E7FBJ2
Length = 2368
Score = 369 (135.0 bits), Expect = 5.5e-34, Sum P(2) = 5.5e-34
Identities = 109/318 (34%), Positives = 168/318 (52%)
Query: 467 KSREAVSSPVEHLTLHYQVRHLDTSEKSEL--HKLQQLKDEQGELSSSDEKKYKALKRAT 524
+ +E + +E+L+ +++E L K Q LK+ +G S K+ + ++ +
Sbjct: 1863 RRKEQLDQMIENLSHQCAKTQKNSTEFKNLLEQKKQFLKEREG--LSRQIKECRGRRQES 1920
Query: 525 EREISQSADVICCTCVGAGDPRLAN-FR------FRQVLIDESTQATEPECLIPLVLGAK 577
+ + Q+A VICCT +G L N FR F V+IDE++QA E E LIP++
Sbjct: 1921 QALVLQNAHVICCTLSTSGSIVLENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRCP 1980
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL------GLKPIRL-QVQYRMHPSL 630
V+LVGD QL P ++ +KA G QSL RL L PI L +QYRMHP +
Sbjct: 1981 SVILVGDPNQLPPTVVSQKAKEFGFDQSLMARLCKSLHPSNSKLPPILLLSMQYRMHPDI 2040
Query: 631 SEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPM-FFYVQMGQEEISASGTSYLNR 689
EFPS Y L+N +++ S WP +P F V G+E + S++N
Sbjct: 2041 CEFPSKYIYNSALKNDCETAQKRCS---LSWPF--KPYKVFDVMDGRE--TKERDSFINH 2093
Query: 690 TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD 749
E + V ++ + V ++GVITPY Q+ I++ + +G + +QL ++EV +VD
Sbjct: 2094 KEVSLVGLLLKLLCKEQAV--RVGVITPYNAQKHRILDAIKTSG-INKQL--QVEVDTVD 2148
Query: 750 SFQGREKDYIILSCVRSN 767
FQGRE D II+SCVR++
Sbjct: 2149 GFQGREMDCIIVSCVRAS 2166
Score = 94 (38.1 bits), Expect = 5.5e-34, Sum P(2) = 5.5e-34
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 409 LIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLAEK 453
LI GPPGTGK+ T ++Y + +K + +VL+CAPSN A+D L +K
Sbjct: 1741 LIHGPPGTGKSKTIGGLLYKLLSSATNSSATVGNLHSKSRRTRVLLCAPSNAAIDSLMKK 1800
Query: 454 I 454
+
Sbjct: 1801 V 1801
Score = 40 (19.1 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 21/78 (26%), Positives = 31/78 (39%)
Query: 383 FGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVT----SAAIVYHMAKQGQGQVL 438
F +P NA+ P+S + P T K T SA++V M K +
Sbjct: 1327 FTDKNVPPSNAANDHLFLKPGMSPMSQKKAKPSTTKIYTPSSRSASLVLEMEKGAKPP-- 1384
Query: 439 VCAPSNVAVDQLAEKISA 456
P+NVA ++ SA
Sbjct: 1385 --PPANVAKAKIPRLASA 1400
>SGD|S000004422 [details] [associations]
symbol:SEN1 "Presumed helicase and subunit of the Nrd1
complex (Nrd1p-Nab3p-Sen1p)" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0043144
"snoRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA;IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IMP;IDA] [GO:0031126 "snoRNA
3'-end processing" evidence=IMP] [GO:0006378 "mRNA polyadenylation"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA;IMP] [GO:0016180 "snRNA processing"
evidence=IEA;IMP] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0035649 "Nrd1 complex" evidence=IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR024714 SGD:S000004422 GO:GO:0005524 GO:GO:0005634
GO:GO:0019904 GO:GO:0006378 EMBL:BK006945 GO:GO:0008033
eggNOG:COG1112 EMBL:U20939 EMBL:U21094 GO:GO:0006364 GO:GO:0006369
GO:GO:0031126 GO:GO:0043141 KO:K00088 RefSeq:NP_013536.3
GeneID:851152 KEGG:sce:YLR432W GO:GO:0016180 KO:K10706
RefSeq:NP_013534.3 GeneID:851150 KEGG:sce:YLR430W GO:GO:0035649
GO:GO:0032575 InterPro:IPR024481 PANTHER:PTHR10887:SF164
Pfam:PF12726 EMBL:M74589 PIR:S53416 ProteinModelPortal:Q00416
SMR:Q00416 DIP:DIP-881N IntAct:Q00416 MINT:MINT-427565
STRING:Q00416 PaxDb:Q00416 PeptideAtlas:Q00416 EnsemblFungi:YLR430W
CYGD:YLR430w GeneTree:ENSGT00580000081652 HOGENOM:HOG000246755
OMA:SAIIPLR OrthoDB:EOG4MPMZ6 NextBio:967924 Genevestigator:Q00416
GermOnline:YLR430W Uniprot:Q00416
Length = 2231
Score = 348 (127.6 bits), Expect = 9.9e-34, Sum P(2) = 9.9e-34
Identities = 94/283 (33%), Positives = 150/283 (53%)
Query: 496 LHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANF--RFR 553
+++L + +DE E +S + + +R + I +D+IC T G+ LA +F
Sbjct: 1526 INELGRDRDEMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSGSAHDVLATMGIKFD 1585
Query: 554 QVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL 613
V+IDE+ Q TE +IPL G K+ ++VGD QL P ++ A+ QSLF R+
Sbjct: 1586 TVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEK- 1644
Query: 614 GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPV--PNRPM-FF 670
P L VQYRMHPS+S+FPS+ FY+G L++G ++ PW P P FF
Sbjct: 1645 NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKR----PWHQLEPLAPYKFF 1700
Query: 671 YVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRS--GVVP--SQIGVITPYEGQRAYIV 726
+ G++E +A SY N E ++V R + +IG+I+PY Q +
Sbjct: 1701 DIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMR 1760
Query: 727 NYMSRN-GALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+R G + + K I+ ++D FQG+EK+ I++SCVR+++
Sbjct: 1761 KEFARYFGGM---INKSIDFNTIDGFQGQEKEIILISCVRADD 1800
Score = 113 (44.8 bits), Expect = 9.9e-34, Sum P(2) = 9.9e-34
Identities = 50/176 (28%), Positives = 81/176 (46%)
Query: 315 LRASQGVPVDI------NHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGH 368
L+ ++G VD+ NH FS +S + M T + +++ G Y+ L+G
Sbjct: 1250 LKNTKGGNVDVTLRIHRNHSFSKFLTLRSEIYCVKVMQMTTIEREYSTLEGLEYYDLVG- 1308
Query: 369 EVEVQMVRNTLPRRFGAPGLP------ELNASQVFA-VKSVLQRPISLIQGPPGTGKTVT 421
++ + + P A + +LN SQ A V SV + SLIQGPPGTGKT T
Sbjct: 1309 --QILQAKPSPPVNVDAAEIETVKKSYKLNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKT 1366
Query: 422 SAAIV-YHMA-KQGQGQVLVCAP---SNVAVDQLAEKISATGLKVVRLCAKSREAV 472
I+ Y ++ K ++ P ++ +QL +K + + +CA S AV
Sbjct: 1367 ILGIIGYFLSTKNASSSNVIKVPLEKNSSNTEQLLKK------QKILICAPSNAAV 1416
Score = 61 (26.5 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 436 QVLVCAPSNVAVDQLAEKISA 456
++L+CAPSN AVD++ ++ +
Sbjct: 1405 KILICAPSNAAVDEICLRLKS 1425
>UNIPROTKB|P38935 [details] [associations]
symbol:IGHMBP2 "DNA-binding protein SMUBP-2" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0006412
"translation" evidence=NAS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000049 "tRNA binding" evidence=IDA] [GO:0032797
"SMN complex" evidence=IDA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3'
DNA helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0030424 "axon" evidence=ISS] [GO:0030426 "growth
cone" evidence=ISS] [GO:0043022 "ribosome binding" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0006260 "DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006310 "DNA recombination" evidence=TAS] [GO:0051260 "protein
homooligomerization" evidence=IPI] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0006412
GO:GO:0006260 GO:GO:0008219 GO:GO:0030424 GO:GO:0008270
GO:GO:0006281 GO:GO:0051260 GO:GO:0006351 GO:GO:0043022
GO:GO:0000122 GO:GO:0030426 GO:GO:0006310 GO:GO:0003697
GO:GO:0030529 GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0043141 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Orphanet:98920 EMBL:AP000808 Gene3D:4.10.1110.10 GO:GO:0032575
EMBL:L14754 EMBL:L24544 EMBL:BC025299 EMBL:M64979 IPI:IPI00009379
PIR:A47500 RefSeq:NP_002171.2 UniGene:Hs.503048 PDB:1MSZ PDB:2LRR
PDB:4B3F PDB:4B3G PDBsum:1MSZ PDBsum:2LRR PDBsum:4B3F PDBsum:4B3G
ProteinModelPortal:P38935 SMR:P38935 IntAct:P38935 STRING:P38935
PhosphoSite:P38935 DMDM:229462778 PaxDb:P38935 PRIDE:P38935
Ensembl:ENST00000255078 GeneID:3508 KEGG:hsa:3508 UCSC:uc001ook.1
CTD:3508 GeneCards:GC11P068671 H-InvDB:HIX0009884
H-InvDB:HIX0171377 HGNC:HGNC:5542 MIM:600502 MIM:604320
neXtProt:NX_P38935 PharmGKB:PA29731 HOVERGEN:HBG077019
InParanoid:P38935 OMA:HARQRIS OrthoDB:EOG4GHZNJ PhylomeDB:P38935
EvolutionaryTrace:P38935 GenomeRNAi:3508 NextBio:13764
ArrayExpress:P38935 Bgee:P38935 CleanEx:HS_IGHMBP2
Genevestigator:P38935 GermOnline:ENSG00000132740
PANTHER:PTHR10887:SF23 Uniprot:P38935
Length = 993
Score = 399 (145.5 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 137/406 (33%), Positives = 203/406 (50%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG +VL CAPSN+AVD
Sbjct: 192 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDN 250
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + + + +R D + +K
Sbjct: 251 LVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRK-DIDQVFVKNKK 309
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAG-D-PR--LANFRF 552
Q K E+ + + K LK E + +S A+V+ T GA D P L F
Sbjct: 310 TQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYF 369
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V+IDE QA E C IPL L A++ +L GDH QL P + KAA AGL+ SL ERL
Sbjct: 370 DVVVIDECAQALEASCWIPL-LKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAE 428
Query: 613 -LGLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINE---RQSSGI------DFPW 661
G + +R L VQYRMH ++ + S++ Y G L ++ R G+ P
Sbjct: 429 EYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPL 488
Query: 662 PVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQ 721
+ + ++ +E+ + G N E V + + +GV I V++PY Q
Sbjct: 489 LLVDTAGCGLFELEEEDEQSKG----NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 722 RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
V+ + ++ R + E+E+ SVD FQGREK+ +ILS VRSN
Sbjct: 545 ----VDLLRQSLVHR---HPELEIKSVDGFQGREKEAVILSFVRSN 583
>TAIR|locus:2059088 [details] [associations]
symbol:AT2G19120 "AT2G19120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] GO:GO:0009506
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0004386 GO:GO:0004519
eggNOG:COG1112 EMBL:AC002392 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI00542366 PIR:T00533
RefSeq:NP_179502.1 UniGene:At.52824 ProteinModelPortal:O64476
SMR:O64476 PaxDb:O64476 PRIDE:O64476 EnsemblPlants:AT2G19120.1
GeneID:816429 KEGG:ath:AT2G19120 TAIR:At2g19120
HOGENOM:HOG000084788 InParanoid:O64476 OMA:DWAALIS PhylomeDB:O64476
ProtClustDB:CLSN2683158 ArrayExpress:O64476 Genevestigator:O64476
Uniprot:O64476
Length = 1090
Score = 363 (132.8 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 96/280 (34%), Positives = 146/280 (52%)
Query: 496 LHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR--FR 553
L ++ +L +G+ + + + + + E + A+++ T +G + F
Sbjct: 717 LVEISRLLIVEGKFRAGNNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFD 776
Query: 554 QVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL 613
V+IDE+ QA+E L PL LGA + VLVGD QL ++ K A ++SLFER L
Sbjct: 777 MVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQLA 836
Query: 614 GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQ 673
G + L VQYRMHP + +FPS FY+G L++ +I+ I + PV +FF +
Sbjct: 837 GCPTLLLTVQYRMHPQIRDFPSRYFYQGRLKDSESISSAPDE-IYYKDPVLRPYLFFNIS 895
Query: 674 MGQEEISASGTSYLNRTEA---ANVEKIVTTFLRS-GVVPSQIGVITPYEGQRAYIVNYM 729
G+E SY N EA V + L+S G +GVITPY+ Q + +
Sbjct: 896 HGRESHRGGSVSYENVDEARFCVGVYMHLQKTLKSLGAGKVSVGVITPYKLQLKCLKHEF 955
Query: 730 SRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH 769
AL Q KEI + +VD+FQG+E+D II+SCVR++ H
Sbjct: 956 GN--ALGQDELKEIYINTVDAFQGQERDVIIMSCVRASGH 993
Score = 74 (31.1 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 24/65 (36%), Positives = 31/65 (47%)
Query: 379 LPRRFGAPGLPELN-------ASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAI--VYHM 429
L R F AP L ++ A VK P +L+QGPPGTGKT T + V H+
Sbjct: 462 LHRSFNAPQLAAIHWAAMHTAAGTSSGVKKQEPWPFTLVQGPPGTGKTHTVWGMLNVIHL 521
Query: 430 AKQGQ 434
+ Q
Sbjct: 522 VQYQQ 526
Score = 61 (26.5 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 436 QVLVCAPSNVAVDQLAEKISATG 458
++LVCAPSN A D+L ++ G
Sbjct: 580 RMLVCAPSNAATDELLSRVLDRG 602
Score = 47 (21.6 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 424 AIVYHMAKQGQGQVLVCAPS-NV---AVDQLAEKISATGLKVV-RLCAKSREAVSSPVEH 478
+++ +A + Q C+ S N+ ++D++ + + + + +LCAK R V +P
Sbjct: 530 SLLKKLAPETYNQANECSSSDNILSGSIDEVLQNMDHNLFRTLPKLCAKPRMLVCAPSNA 589
Query: 479 LTLHYQVRHLD 489
T R LD
Sbjct: 590 ATDELLSRVLD 600
Score = 37 (18.1 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 336 KSTSFDRMQGAMKTFAVDETSVSGYIYHHLLG 367
KS F G A +T +G Y LLG
Sbjct: 135 KSVDFPSTGGIHSESAEQKTESNGESYSGLLG 166
>TAIR|locus:2166173 [details] [associations]
symbol:AT5G37150 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004386
KO:K10706 IPI:IPI01020555 RefSeq:NP_198531.2 UniGene:At.55176
ProteinModelPortal:F4K5W5 SMR:F4K5W5 PRIDE:F4K5W5
EnsemblPlants:AT5G37150.1 GeneID:833688 KEGG:ath:AT5G37150
OMA:RSVDEYY Uniprot:F4K5W5
Length = 839
Score = 326 (119.8 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 87/255 (34%), Positives = 132/255 (51%)
Query: 530 QSADVICCTCVGAGDPRLANFRFRQVLI-DESTQATEPECLIPLVL-GAKQVVLVGDHCQ 587
Q+AD+I CT GA + + ++L+ DE+ Q E E + L L G + +L+GD Q
Sbjct: 504 QNADIILCTASGAAEMNVERTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQ 563
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
L ++ + +A +SLFERLVLLG L VQYRMHPS+S FP+ FY G +++
Sbjct: 564 LPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKEFYGGRIKDAE 623
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
+ E + F V G+EE G S N E A V +I++ +
Sbjct: 624 NVKESIYQKRFLQGNMFGSFSFINVGRGKEEFG-DGHSPKNMVEVAVVSEIISNLFKVSC 682
Query: 708 ---VPSQIGVITPYEGQ-RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSC 763
+ +GV++PY+GQ RA + +L Q + + V SVD FQG E+D II+S
Sbjct: 683 ERRMKVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFA-LNVRSVDGFQGGEEDIIIIST 741
Query: 764 VRSNEHQRNRYVKTK 778
VRSN + + ++ +
Sbjct: 742 VRSNSNGKVGFLNNR 756
Score = 122 (48.0 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 40/153 (26%), Positives = 78/153 (50%)
Query: 310 EVALELRASQGV-PVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGH 368
++ + + S+ + P++ N+ F V F+ T+ R+ A+ A T + + + +
Sbjct: 142 DLKISVHLSRSISPLE-NYSFGV-FLMTLTTNTRIWNALHNEAAISTLTKSVLQANTVNN 199
Query: 369 EVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQ-------RPISLIQGPPGTGKTVT 421
++M+ + L +LN+SQ A+ L+ + LI GPPGTGKT T
Sbjct: 200 VFVLKMMGD-LTLFLDIIRSTKLNSSQEDAILGCLETRNCTHKNSVKLIWGPPGTGKTKT 258
Query: 422 SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI 454
A +++ + K + + +VCAP+N A+ Q+A ++
Sbjct: 259 VATLLFALLKL-RCKTVVCAPTNTAIVQVASRL 290
Score = 42 (19.8 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 221 ISAKTESVVVLLCREPCLNMMKESQSKDNVTIR 253
+ A T + +V + L++ KE+ + +N T R
Sbjct: 275 VCAPTNTAIVQVASR-LLSLFKENSTSENATYR 306
Score = 38 (18.4 bits), Expect = 9.2e-25, Sum P(2) = 9.2e-25
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 478 HLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATE 525
H L ++ + S ++ ++ K +Q SSS++ Y +ATE
Sbjct: 55 HTELFSSLKSVSKSPFVQIRSMET-KTKQSSGSSSNKLFYDITLKATE 101
>UNIPROTKB|G4NIZ8 [details] [associations]
symbol:MGG_02784 "DNA-binding protein SMUBP-2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR024714 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0008033 GO:GO:0004386 EMBL:CM001237
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_003720957.1 EnsemblFungi:MGG_02784T0 GeneID:2682672
KEGG:mgr:MGG_02784 Uniprot:G4NIZ8
Length = 2037
Score = 359 (131.4 bits), Expect = 6.1e-33, Sum P(2) = 6.1e-33
Identities = 109/299 (36%), Positives = 155/299 (51%)
Query: 489 DTSEKSELHK-LQQLKDEQGELSSS-DEKKYKALKRATE-----REISQS----ADVICC 537
D + + L + L +L+ +QG++ + D K A E R I QS A V+C
Sbjct: 1498 DHGQTNSLQRNLDELRKKQGQIGAQIDRDKASGNTYAREAEIKRRNIQQSILSEAHVLCA 1557
Query: 538 TCVGAGDPRLANFR--FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCK 595
T GAG + + F V+IDE+ Q E LIPL GA + +LVGD QL P ++ +
Sbjct: 1558 TLSGAGHDMFKSLQVEFETVIIDEAAQCVELSALIPLKYGASKCILVGDPKQLPPTVLSQ 1617
Query: 596 KAARAGLAQSLFERLVLLGLKPIRL-QVQYRMHPSLSEFPSNSFYEGTLQNGVTINE-RQ 653
AAR G QSLF R+ + L QYRMHP +S +PS FYEG L +G + + RQ
Sbjct: 1618 SAARYGYDQSLFVRMQQNHPGKVHLLDCQYRMHPEISLYPSKEFYEGLLADGSDMAKLRQ 1677
Query: 654 SSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTF---LRSGV-VP 709
D P P R FF V+ G +E + G S +N E +I T F S + +
Sbjct: 1678 QPWHDNPLLGPYR--FFDVE-GIQERGSRGQSLVNTNEINVAIQIYTKFQADYASSIDMK 1734
Query: 710 SQIGVITPYEGQR-AYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+IG+ITPY+ Q A + R G + + ++IE + D+FQGRE + II SCVR++
Sbjct: 1735 GKIGIITPYKAQLFALRQKFQERWG---EGVLEDIEFNTTDAFQGRECEIIIFSCVRAS 1790
Score = 93 (37.8 bits), Expect = 6.1e-33, Sum P(2) = 6.1e-33
Identities = 35/115 (30%), Positives = 55/115 (47%)
Query: 390 ELNASQVFAVKSVLQRP-ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448
+LN Q A+ + + +L+QGPPGTGKT T A+V + G++ P+ +
Sbjct: 1326 QLNRGQAAAIINAKENDGFTLVQGPPGTGKTKTIIAMVGALLT---GKISRAPPTRIKPA 1382
Query: 449 QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK 503
A++ A L V CA S AV + L L + DT+ + HK+ L+
Sbjct: 1383 NGADEPMAQKLLV---CAPSNAAV----DELVLRLKAGIKDTNGNT--HKINVLR 1428
>ZFIN|ZDB-GENE-070424-144 [details] [associations]
symbol:si:ch211-183d5.1 "si:ch211-183d5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR026855 ZFIN:ZDB-GENE-070424-144
GO:GO:0004386 PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AL935128 IPI:IPI00492493 Ensembl:ENSDART00000144897
Uniprot:F1QAI5
Length = 517
Score = 375 (137.1 bits), Expect = 7.5e-33, P = 7.5e-33
Identities = 116/341 (34%), Positives = 166/341 (48%)
Query: 439 VCAPSNVAVDQLA-EKISATGLKVVRLCAKSR--EAVSSPVEHLTLHYQVRHLDTSEKSE 495
V P + DQ+ + TG ++ +LC +S E + +TL Y VR + E
Sbjct: 90 VLKPLRIYCDQMEMREFPYTGSEL-KLCRRSLRDEKPKEELRDITLMYLVRKPENPFSEE 148
Query: 496 LHKLQQLKDEQGELSSSDEKKY-KALKRATEREISQSADVICCTCVGAGDPRLANFR-FR 553
+ L++ LS Y K LK+A + EI + DV+ CTC A P L FR
Sbjct: 149 IKALEK------NLSVDQIDNYRKLLKKANQHEI-EKYDVVLCTCSSALKPELREVMDFR 201
Query: 554 QVLIDESTQATEPECLIPLVL-GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
Q+LIDE ATEPE IPLV +Q+VL+GDH Q+ P++ C G+ +SLFER +
Sbjct: 202 QILIDECAMATEPEAFIPLVSHNPQQIVLLGDHQQIRPIVQCGHVKNKGMEKSLFERYMD 261
Query: 613 LGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672
L L QYRMH + FPS+ FY+G L+ G ER + P +F ++
Sbjct: 262 LANM---LDTQYRMHAEICSFPSDEFYDGKLKTGA---ERGPCCLLNKSKEPTAMLFGHI 315
Query: 673 QMGQEEISASGTSYLNRTEAANVEKI-----VTTFL--RSGVVPSQIGVITPYEGQRAYI 725
+ G+E T N AN E+ V L +SGV P I ++TPY Q + I
Sbjct: 316 E-GKEVSLVVSTEKGNENSMANTEEAEQAVCVADLLIKQSGVSPEHIAILTPYNAQVSEI 374
Query: 726 VNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
M+ L ++ + + V +V QG E Y+I+S VRS
Sbjct: 375 K--MT----LEKKNVRNVTVCTVMKSQGSEWPYVIVSTVRS 409
>TAIR|locus:2130384 [details] [associations]
symbol:MAA3 "MAGATAMA 3" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009875 "pollen-pistil interaction" evidence=IMP]
[GO:0010183 "pollen tube guidance" evidence=IMP] PROSITE:PS51198
GO:GO:0005524 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0004386 GO:GO:0009553 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:Z97339 GO:GO:0010183 EMBL:AL161542 EMBL:EU915246
IPI:IPI00522212 PIR:E71420 RefSeq:NP_193292.3 UniGene:At.33168
ProteinModelPortal:B6SFA4 SMR:B6SFA4 PaxDb:B6SFA4 PRIDE:B6SFA4
EnsemblPlants:AT4G15570.1 GeneID:827233 KEGG:ath:AT4G15570
GeneFarm:2417 TAIR:At4g15570 HOGENOM:HOG000030627 KO:K10706
OMA:TIMREFT PhylomeDB:B6SFA4 ProtClustDB:CLSN2680970
Genevestigator:B6SFA4 GO:GO:0009875 InterPro:IPR026852
PANTHER:PTHR10887:SF27 Uniprot:B6SFA4
Length = 818
Score = 361 (132.1 bits), Expect = 8.0e-33, Sum P(2) = 8.0e-33
Identities = 115/357 (32%), Positives = 181/357 (50%)
Query: 426 VYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVE--HLTLHY 483
V + +++ + +VLVCAPSN A+D++ ++ ++GL+ + + V ++ H
Sbjct: 366 VVNASRKYRLRVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSVASV 425
Query: 484 QVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAG 543
+ HL ++ K +QG + + +++ A I + A ++ T +G
Sbjct: 426 SLDHLVAQKRGSAID----KPKQGTTGTDID----SIRTA----ILEEAAIVFATLSFSG 473
Query: 544 DPRLA--NFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAG 601
LA N F V+IDE+ QA EP LIPL KQV LVGD QL ++ A +G
Sbjct: 474 SALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVISTVAQDSG 533
Query: 602 LAQSLFERLVLLGLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFP 660
S+FERL G P++ L+ QYRMHP + FPS FYEG L++G I E Q++
Sbjct: 534 YGTSMFERLQKAGY-PVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDI-EAQTTRDWHK 591
Query: 661 WPVPNRPMFFYVQMGQEEISASGT-SYLNRTEAANV----EKIVTTF--LRSGVVPSQIG 713
+ FF + G+E T S +N E V ++VT + L+S SQ+
Sbjct: 592 YRCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSS---SQLA 648
Query: 714 VITPYEGQ-RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH 769
+I+PY Q + + + G + K +++ +VD FQGREKD I SCVR+NE+
Sbjct: 649 IISPYNYQVKTFKDRFKEMFGT---EAEKVVDINTVDGFQGREKDVAIFSCVRANEN 702
Score = 77 (32.2 bits), Expect = 8.0e-33, Sum P(2) = 8.0e-33
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 391 LNASQVFAVKSVLQRP-ISLIQGPPGTGKTVTSAAIV 426
LN SQ A+ L R LIQGPPGTGKT T +I+
Sbjct: 258 LNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSIL 294
Score = 46 (21.3 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 175 TSGSHIVNHLVRAKHKE-----VCLHKDSPLGETILECYNCGCRN 214
TSG+ + +V A K VC +S L E +L + G R+
Sbjct: 357 TSGNELKPEVVNASRKYRLRVLVCAPSNSALDEIVLRLLSSGLRD 401
>RGD|1306056 [details] [associations]
symbol:Pric285 "peroxisomal proliferator-activated receptor A
interacting complex 285" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 RGD:1306056 GO:GO:0005524
GO:GO:0003723 GO:GO:0004386 GO:GO:0004540 PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 IPI:IPI00567928 RefSeq:XP_001057758.2
RefSeq:XP_230961.5 UniGene:Rn.47450 ProteinModelPortal:D4ADC2
Ensembl:ENSRNOT00000017787 GeneID:296474 KEGG:rno:296474
UCSC:RGD:1306056 CTD:296474 OrthoDB:EOG4Q84WM NextBio:641262
ArrayExpress:D4ADC2 Uniprot:D4ADC2
Length = 2944
Score = 332 (121.9 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 102/301 (33%), Positives = 154/301 (51%)
Query: 479 LTLHYQVRHLDTSEKSELHKLQ-QLKDEQGELSSSDEKK-YK-ALKRATEREISQSADVI 535
+TLH+++R +E+ K QL++ G++ S D+ Y+ L +A + E+ + + ++
Sbjct: 2576 ITLHHRIRQAPNPYAAEIRKFDAQLRE--GKIFSKDDLLVYRRVLGKARKYELERHSVIL 2633
Query: 536 C-CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVI 592
C C+C +G + N R Q+LIDE+ ATEPE LIPLV +K +VVL+GDH QL PV+
Sbjct: 2634 CTCSCAASGSLKALNVR--QILIDEAGMATEPETLIPLVCFSKTEKVVLLGDHKQLRPVV 2691
Query: 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINER 652
++ G+ +SLFER I L QYRMH + FPS FY G L+ + +R
Sbjct: 2692 KNEQLRNLGMDRSLFERY---HRDAIMLDTQYRMHKDICSFPSMEFYGGKLKTWSDL-KR 2747
Query: 653 QSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI--VTTFLRS----- 705
S + + P+ F G E+ T N AN E++ V ++
Sbjct: 2748 PPSLLGHVGK-QSCPVIFGSVQGYEQKLLVSTEEGNENSRANPEEVTEVVRIIKQLTLDR 2806
Query: 706 GVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVR 765
V P + V+TPY Q A I SR L Q+ + V S+ QG E Y+I+S VR
Sbjct: 2807 TVDPKDVAVLTPYNAQAAAI----SRG--LMQRGVTGVTVTSITKSQGSEWRYVIVSTVR 2860
Query: 766 S 766
+
Sbjct: 2861 T 2861
Score = 162 (62.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 75/241 (31%), Positives = 103/241 (42%)
Query: 548 ANFRFRQVLIDESTQATEPECLIPL--VLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQS 605
A F F + IDE+ Q E E LIPL L +VVL GDH Q+ P + +A
Sbjct: 903 AGF-FSHIFIDEAAQMLECEALIPLSYALTLTRVVLAGDHMQVTPRLFSVPRDKAA-GHM 960
Query: 606 LFERLVLLGLKPIRLQVQ---------YRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
L RL L + + Q YR ++ F S FY + G N Q+SG
Sbjct: 961 LLHRLFLYYQQEVHKIAQHSRIVFHENYRSTAAIINFVSRHFY---VAKG---NPIQASG 1014
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANV-EKIVTTFLRSGVVPSQIGVI 715
P + P+ F G E S TS+LN E V EK+ + P G
Sbjct: 1015 -KVPRHPQHYPLMFCHVAGSPEQDMSRTSWLNSAEVTQVVEKVQEIY---NTWPHCWG-- 1068
Query: 716 TPYEGQRAYIVNYMSRNGALRQQLYK----EIEVASVDSFQGREKDYIILSCVRSNEHQR 771
P E + V++ ++ ALRQ+L + E+ V S + GRE ++LS V H R
Sbjct: 1069 -PREQRHICAVSHGAQVSALRQELRRRNLGEVSVGSFEILPGREFRVVVLSSV----HNR 1123
Query: 772 N 772
N
Sbjct: 1124 N 1124
Score = 120 (47.3 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 381 RRFGAPG-LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQV 437
+ + PG +LN SQ AV+S LQ+ ++IQGPPGTGKTV IVY + Q Q+
Sbjct: 2436 KNYNIPGGHHKLNQSQDKAVRSALQKQFTVIQGPPGTGKTVVGFHIVYWFHRSNQEQM 2493
Score = 86 (35.3 bits), Expect = 7.3e-29, Sum P(2) = 7.3e-29
Identities = 28/79 (35%), Positives = 35/79 (44%)
Query: 378 TLPRRFGAPGLPELNASQVFAVKSVLQR--------PISLIQGPPGTGKTVTSAAIVYHM 429
TLP + P N Q AV + R P LI GP GTGKT T A +
Sbjct: 747 TLPHPWPTPPSFRGNHKQKLAVGLIAGRRPEGSKHIPPLLIYGPFGTGKTYTLAMAALEV 806
Query: 430 AKQGQGQVLVCAPSNVAVD 448
+Q +VL+C +N A D
Sbjct: 807 VQQPHTKVLICTHTNSAAD 825
Score = 57 (25.1 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 431 KQGQGQVLVCAPSNVAVDQLAEKI--SATGLKVVRLCAKSREAVSSPV 476
K G VL C PSN +VD L + T ++ +R+ + EA P+
Sbjct: 2504 KLGGPCVLYCGPSNKSVDVLGGLLLRKKTEMRPLRVYGEQAEATEFPL 2551
Score = 39 (18.8 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 341 DRMQGAMKTFAVDETSVSGY-IYHHL-LGHEVEVQMV 375
D MQ + F+V +G+ + H L L ++ EV +
Sbjct: 940 DHMQVTPRLFSVPRDKAAGHMLLHRLFLYYQQEVHKI 976
Score = 37 (18.1 bits), Expect = 4.8e-32, Sum P(4) = 4.8e-32
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 353 DETSVSGYIYHHLLGHEVEVQ 373
DE SV G+ H++ E +Q
Sbjct: 1743 DEDSVLGFRTAHIMVQEYMIQ 1763
>TAIR|locus:2173033 [details] [associations]
symbol:AT5G52090 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0004519 eggNOG:COG1112
EMBL:AB015478 KO:K10706 IPI:IPI00525648 RefSeq:NP_200022.1
UniGene:At.65668 ProteinModelPortal:Q9FJ83 SMR:Q9FJ83 PRIDE:Q9FJ83
EnsemblPlants:AT5G52090.1 GeneID:835285 KEGG:ath:AT5G52090
TAIR:At5g52090 HOGENOM:HOG000083772 InParanoid:Q9FJ83 OMA:TACEASE
PhylomeDB:Q9FJ83 ProtClustDB:CLSN2686886 Genevestigator:Q9FJ83
Uniprot:Q9FJ83
Length = 676
Score = 323 (118.8 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 86/244 (35%), Positives = 128/244 (52%)
Query: 530 QSADVICCTCVGAGDPRLANFRFRQVLI-DESTQATEPECLIPLVL-GAKQVVLVGDHCQ 587
Q+AD+I CT GA + + ++L+ DE+ Q E E + L L G + +L+GD Q
Sbjct: 341 QNADIILCTASGAAEMNVERTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQ 400
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
L ++ + +A +SLFERLVLLG L VQYRMHPS+S FP+ FY G +++
Sbjct: 401 LPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKEFYGGRIKDAE 460
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
+ E + + F V G+EE G S N E A + +I++ +
Sbjct: 461 NVKESIYQKRFLKGNMFDSFSFINVGRGKEEFG-DGHSPKNMVEVAVISEIISNLYKVSC 519
Query: 708 ---VPSQIGVITPYEGQ-RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSC 763
+ +GV++PY+GQ RA + +L Q + + V SVD FQG E+D II+S
Sbjct: 520 ERRMKVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFT-LNVRSVDGFQGGEEDIIIIST 578
Query: 764 VRSN 767
VRSN
Sbjct: 579 VRSN 582
Score = 101 (40.6 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 390 ELNASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442
+LN+SQ A+ L+ + LI GPP TGKT T A +++ + K + + +VCAP
Sbjct: 57 KLNSSQEDAILGCLETRNCTHKNSVKLIWGPPRTGKTKTVATLLFALLKL-RCKTVVCAP 115
Query: 443 SNVAVDQLAEKI 454
+N A+ Q+ ++
Sbjct: 116 TNTAIVQVTSRL 127
Score = 40 (19.1 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 221 ISAKTESVVVLLCREPCLNMMKESQSKDNVTIR 253
+ A T + +V + L++ KE+ + +N T R
Sbjct: 112 VCAPTNTAIVQVTSR-LLSLFKENSTAENATYR 143
>TAIR|locus:2126480 [details] [associations]
symbol:AT4G30100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] GO:GO:0009506 EMBL:CP002687 EMBL:AL161576
GO:GO:0004519 eggNOG:COG1112 EMBL:AL078464 KO:K10706
InterPro:IPR026852 PANTHER:PTHR10887:SF27 HOGENOM:HOG000084788
ProtClustDB:CLSN2683158 IPI:IPI00535923 PIR:T08986
RefSeq:NP_194739.1 UniGene:At.31859 ProteinModelPortal:Q9SZW3
SMR:Q9SZW3 STRING:Q9SZW3 PaxDb:Q9SZW3 PRIDE:Q9SZW3
EnsemblPlants:AT4G30100.1 GeneID:829133 KEGG:ath:AT4G30100
TAIR:At4g30100 InParanoid:Q9SZW3 PhylomeDB:Q9SZW3
ArrayExpress:Q9SZW3 Genevestigator:Q9SZW3 Uniprot:Q9SZW3
Length = 1311
Score = 344 (126.2 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 93/281 (33%), Positives = 144/281 (51%)
Query: 495 ELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR--F 552
+L ++ +L +G+ + + + + E + A+++ T +G + F
Sbjct: 879 DLVEMSRLLIVEGKFRAGTSFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGF 938
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V+IDE+ QA+E L PL LGA + VLVGD QL ++ K A ++SLFER L
Sbjct: 939 DMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQL 998
Query: 613 LGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672
G + L VQYRMHP + +FPS FY+G L + +++ I + V +FF +
Sbjct: 999 AGCPTLLLTVQYRMHPQIRDFPSRYFYQGRLTDSESVSTAPDE-IYYKDSVLKPYLFFDI 1057
Query: 673 QMGQEEISASGTSYLNRTEA---ANVEKIVTTFLRS-GVVPSQIGVITPYEGQRAYIVNY 728
G+E SY N EA V + L+S G +GVITPY+ Q +
Sbjct: 1058 SHGRESHRGGSVSYENIDEARFCVGVYLHLQRTLKSLGGGKVSVGVITPYKLQLKCLK-- 1115
Query: 729 MSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH 769
+ AL Q +EI + +VD+FQG+E+D II+SCVR++ H
Sbjct: 1116 IEFGNALSQDELQEIYINTVDAFQGQERDVIIMSCVRASNH 1156
Score = 74 (31.1 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 379 LPRRFGAPGLPELN--ASQVFA-VKSVLQR----PISLIQGPPGTGKTVTSAAI--VYHM 429
L R F AP L ++ A A S ++R P +L+QGPPGTGKT T + V H+
Sbjct: 626 LHRSFNAPQLAAIHWAAMHTAAGTSSGVKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHL 685
Query: 430 AKQGQ 434
+ Q
Sbjct: 686 VQYQQ 690
Score = 61 (26.5 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 436 QVLVCAPSNVAVDQLAEKISATG 458
++LVCAPSN A D+L ++ G
Sbjct: 743 RMLVCAPSNAATDELLSRVLDRG 765
Score = 47 (21.6 bits), Expect = 5.2e-27, Sum P(2) = 5.2e-27
Identities = 16/70 (22%), Positives = 33/70 (47%)
Query: 424 AIVYHMAKQGQGQVLVCAPSNV---AVDQLAEKISATGLKVV-RLCAKSREAVSSPVEHL 479
+++ +A + QV + N+ ++D++ + + + + +LCAK R V +P
Sbjct: 694 SLLKKLAPESYKQVNESSSDNIVSGSIDEVLQNMDQNLFRTLPKLCAKPRMLVCAPSNAA 753
Query: 480 TLHYQVRHLD 489
T R LD
Sbjct: 754 TDELLSRVLD 763
>TAIR|locus:2200996 [details] [associations]
symbol:SDE3 "SILENCING DEFECTIVE" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0009616
"virus induced gene silencing" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] InterPro:IPR026127 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005737
eggNOG:COG1112 EMBL:AC005106 GO:GO:0003724 GO:GO:0035194
GO:GO:0009616 HOGENOM:HOG000239755 EMBL:AF339908 EMBL:AK117698
IPI:IPI00521883 PIR:C86189 RefSeq:NP_172037.1 UniGene:At.15329
UniGene:At.42398 ProteinModelPortal:Q8GYD9 SMR:Q8GYD9 STRING:Q8GYD9
PaxDb:Q8GYD9 PRIDE:Q8GYD9 EnsemblPlants:AT1G05460.1 GeneID:837047
KEGG:ath:AT1G05460 GeneFarm:2423 TAIR:At1g05460 InParanoid:Q8GYD9
OMA:DEREGNN PhylomeDB:Q8GYD9 ProtClustDB:CLSN2682016
Genevestigator:Q8GYD9 GermOnline:AT1G05460 PANTHER:PTHR10887:SF165
Uniprot:Q8GYD9
Length = 1002
Score = 280 (103.6 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 102/323 (31%), Positives = 143/323 (44%)
Query: 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSE---KSELHKLQQLKDEQGELSSSDEKKYK 518
V +CA S A +E L VR D + +++K E DE +K
Sbjct: 447 VLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAATRSYEEIKPEIIRFCFFDELIFK 506
Query: 519 A--LKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIP---LV 573
LK T ++ S + G R F +L+DE+ QA+EPE +I L
Sbjct: 507 CPPLKALTRYKLVVSTYMSASLLNAEGVNR---GHFTHILLDEAGQASEPENMIAVSNLC 563
Query: 574 LGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLK-------PIRLQVQYRM 626
L VVL GD QLGPVI + A GL +S ERL +L YR
Sbjct: 564 LTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRC 623
Query: 627 HPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR--PMFFYVQMGQEEISASGT 684
HP + + PS FY+G L + + ++F +PN+ PM FY G +E +
Sbjct: 624 HPEILDLPSKLFYDGELVASKEDTDSVLASLNF---LPNKEFPMVFYGIQGCDEREGNNP 680
Query: 685 SYLNRTEAANVEKIVTTFLRSGVVPSQ-IGVITPYEGQRAYIVNYMSRNGALRQQLYKEI 743
S+ NR E + V + + + V + IGVITPY Q I + R E+
Sbjct: 681 SWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMT------EV 734
Query: 744 EVASVDSFQGREKDYIILSCVRS 766
+V SV+ FQG+EK II+S VRS
Sbjct: 735 KVGSVEQFQGQEKQVIIISTVRS 757
Score = 151 (58.2 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 58/183 (31%), Positives = 94/183 (51%)
Query: 277 LVPGDELRLRYS-GDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVW 335
LV GD + +R++ D A+Q G V ++ A +EV ++ + ++V F +
Sbjct: 295 LVHGDFIFVRHAYDDGTDHAYQ--GFVHRVEA-DEVHMKFASEFHQRHTAGSVYNVRFTY 351
Query: 336 KSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQ 395
+ R+ A+ + + + +++ L H + +M++ T P F P P LNA Q
Sbjct: 352 NRINTRRLYQAVDAAEMLDPN---FLFPSL--HSGK-RMIK-TKP--F-VPISPALNAEQ 401
Query: 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSNVAVDQLA 451
+ +++ VL P +I GPPGTGKT+T AIV Q +VLVCAPSN A D +
Sbjct: 402 ICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHIL 461
Query: 452 EKI 454
EK+
Sbjct: 462 EKL 464
>CGD|CAL0003335 [details] [associations]
symbol:SEN1 species:5476 "Candida albicans" [GO:0035649 "Nrd1
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] [GO:0031126 "snoRNA
3'-end processing" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR014016 InterPro:IPR024714 PROSITE:PS51198
CGD:CAL0003335 GO:GO:0005524 GO:GO:0005634 GO:GO:0008033
GO:GO:0004386 eggNOG:COG1112 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_723003.1 RefSeq:XP_723150.1 ProteinModelPortal:Q5ANG6
STRING:Q5ANG6 GeneID:3635255 GeneID:3635333 KEGG:cal:CaO19.13359
KEGG:cal:CaO19.5938 Uniprot:Q5ANG6
Length = 2018
Score = 344 (126.2 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 103/311 (33%), Positives = 160/311 (51%)
Query: 467 KSREAVSSPVE-HLT-LHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRAT 524
+ R A S E +T L ++R ++ ++SEL K +L DEQ E +S + + +R
Sbjct: 1450 RKRLATESLEEKEITELEEKIRAIN-KKRSELAK--KL-DEQREKASIANRTKEINRRNI 1505
Query: 525 EREISQSADVICCTCVGAGDPRLANF--RFRQVLIDESTQATEPECLIPLVLGAKQVVLV 582
+ I A V+C T G+ +AN +F QV+IDE+ Q E +IPL G K+ ++V
Sbjct: 1506 QARILSEAQVLCSTLSGSAHDLVANLSVQFDQVIIDEACQCLELSAIIPLRYGCKKCIMV 1565
Query: 583 GDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPI-RLQVQYRMHPSLSEFPSNSFYEG 641
GD QL P ++ + AA QSLF R+ + L VQYRMHP +S+FPS+ FY
Sbjct: 1566 GDPNQLPPTVLSQAAASYNYEQSLFVRMQKNHPDSVYMLDVQYRMHPMISKFPSSEFYNS 1625
Query: 642 TLQNGVTINERQSSGIDFPW--PVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIV 699
L++G + E + PW P P F+ +G+ E + S N EA ++
Sbjct: 1626 KLKDGDGMLELNTR----PWHKDPPLTPYRFFDILGKHEKNELTRSLFNTDEAIVALQLT 1681
Query: 700 TTFLR---SGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREK 756
++ +IG+I+PY+ Q I R + + EI+ +VD FQG+EK
Sbjct: 1682 DKLMQLLPQDKFSGKIGIISPYKEQIRKIKEVFVRKYG--KPILDEIDFNTVDGFQGQEK 1739
Query: 757 DYIILSCVRSN 767
+ II+SCVR++
Sbjct: 1740 EIIIMSCVRAS 1750
Score = 91 (37.1 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 391 LNASQVFAVKSVLQRP-ISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCAPSNVAV- 447
+N SQ A+ + SLIQGPPGTGKT T IV Y ++++ +V+ + S +
Sbjct: 1297 VNDSQARAIMGTFKSEGFSLIQGPPGTGKTKTILGIVGYSLSQEKNNKVIDISGSGSSPT 1356
Query: 448 --DQLAEKISA-TGLKVVRLCAKSREAV-SSPVEHLTL 481
D+ I A + V L + R+ V +S EH+ L
Sbjct: 1357 PSDKAKILICAPSNAAVDELVLRLRDGVRNSSGEHMPL 1394
Score = 45 (20.9 bits), Expect = 8.9e-26, Sum P(3) = 8.9e-26
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 437 VLVCAPSNVAVDQLAEKISATGLKVVRLCAKSRE 470
VL PS + L K TG+KV+++ RE
Sbjct: 1223 VLRVYPSGPMMGALTPKSVVTGMKVMQMVTIERE 1256
Score = 43 (20.2 bits), Expect = 8.9e-26, Sum P(3) = 8.9e-26
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 385 APGLPELNASQ-VFAVKSVLQRPISLIQGPP 414
AP E+ +Q + +++ LQ+ S I GPP
Sbjct: 936 APAPKEVKGTQNLDSIRQKLQQSRSSITGPP 966
>TAIR|locus:2166163 [details] [associations]
symbol:AT5G37140 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00534313 RefSeq:NP_198530.1 UniGene:At.55175
ProteinModelPortal:F4K5W4 SMR:F4K5W4 PRIDE:F4K5W4
EnsemblPlants:AT5G37140.1 GeneID:833686 KEGG:ath:AT5G37140
OMA:TEAKYEH ArrayExpress:F4K5W4 Uniprot:F4K5W4
Length = 692
Score = 316 (116.3 bits), Expect = 4.5e-31, Sum P(3) = 4.5e-31
Identities = 88/243 (36%), Positives = 124/243 (51%)
Query: 530 QSADVICCTCVGAGDPR-LANFRFRQVLIDESTQATEPECLIPLVL-GAKQVVLVGDHCQ 587
Q+AD+I CT GA D + +++DE+ Q E E + L L G + VL+GD Q
Sbjct: 362 QNADIIFCTASGAADMNPIRTGSVDLLVVDEAAQLKECESVAALQLSGLRHAVLIGDELQ 421
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
L P M A+ G +SLFERLVLLG L VQYRMHPS+S FP+ FY G +++
Sbjct: 422 L-PA-MVHNEAKFG--RSLFERLVLLGHNKHLLNVQYRMHPSISRFPNKEFYGGRIKDAA 477
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
+ E + F V G+EE G S N E A + +I++ +
Sbjct: 478 NVQESIYQKRFLQGNMFGSFSFINVGRGEEEFG-DGHSPKNMVEVAVISEIISNLFKVSS 536
Query: 708 ---VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCV 764
+ +GV++PY+GQ I + + L+ + V SVD FQG E+D II+S V
Sbjct: 537 ERRIKMSVGVVSPYKGQVRAIQERTTNKYSSLSGLFT-LNVRSVDGFQGGEEDIIIISTV 595
Query: 765 RSN 767
RSN
Sbjct: 596 RSN 598
Score = 110 (43.8 bits), Expect = 4.5e-31, Sum P(3) = 4.5e-31
Identities = 38/134 (28%), Positives = 65/134 (48%)
Query: 329 FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEV-QMVRNTLPRRFGAPG 387
F V F+ T+ R+ A+ A + T + + + L E V + + R
Sbjct: 12 FGV-FLMNLTTNTRIWNALHNEAANSTLIKSVLQENTLTTEQCVCESGAHGSDRVTNIIR 70
Query: 388 LPELNASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440
+LN+SQ A+ S L+ + LI GPPGTGKT T A +++ + K + +VC
Sbjct: 71 SAKLNSSQEAAILSCLKIRNCNHKHSVKLIWGPPGTGKTKTVATLLFCLLKLSC-KTVVC 129
Query: 441 APSNVAVDQLAEKI 454
AP+N A+ ++ ++
Sbjct: 130 APTNTAIVEVTSRL 143
Score = 37 (18.1 bits), Expect = 4.5e-31, Sum P(3) = 4.5e-31
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 496 LHKLQQLKDEQGELSSSDEKKYKALKRAT 524
L +++++ +E + +KK KA+K T
Sbjct: 226 LKEVERMSEEAEKKKKGADKKPKAIKILT 254
Score = 37 (18.1 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 372 VQMVRNTLPRRFGAPGLPELNASQVFAVKS 401
+Q++R LP RF + E N ++ F +++
Sbjct: 335 LQILR-LLPERFEVSDMLENNDTKTFCLQN 363
>TAIR|locus:2166183 [details] [associations]
symbol:AT5G37160 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00521499 RefSeq:NP_198532.1 UniGene:At.55177
ProteinModelPortal:F4K5W6 SMR:F4K5W6 PRIDE:F4K5W6
EnsemblPlants:AT5G37160.1 GeneID:833689 KEGG:ath:AT5G37160
OMA:WAELISE Uniprot:F4K5W6
Length = 871
Score = 302 (111.4 bits), Expect = 6.6e-31, Sum P(3) = 6.6e-31
Identities = 87/245 (35%), Positives = 122/245 (49%)
Query: 530 QSADVICCTCVGAGDPRLANFRFRQVLI-DESTQATEPECLIPLVL-GAKQVVLVGDHCQ 587
Q+AD+I CT + A +L+ DE+ Q E E + L L G +L+GD Q
Sbjct: 537 QNADIIFCTASSVANINPARIGSVDLLVVDETAQLKECESVAALQLPGLCHALLIGDEYQ 596
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
L ++ ++ +A +SLFERLVL+G L VQYRMHPS+S FP+ FY G + +
Sbjct: 597 LPAMVHNEECDKAKFGRSLFERLVLIGHSKHLLNVQYRMHPSISRFPNKEFYGGRITDAA 656
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
+ E + F V G+EE G S N E A + KI++ +
Sbjct: 657 NVQESIYEKRFLQGNMFGTFSFINVGRGKEEFG-DGHSPKNMVEVAVISKIISNLFKVSS 715
Query: 708 VPSQ---IGVITPYEGQ-RAYIVNYMSRNGALR-QQLYKEIEVASVDSFQGREKDYIILS 762
Q +GVI+PY+GQ RA + +L QL+ + V SVD FQG E D II+S
Sbjct: 716 QRKQKMSVGVISPYKGQVRAIQERVGDKYNSLSVDQLFT-LNVQSVDGFQGGEVDVIIIS 774
Query: 763 CVRSN 767
VR N
Sbjct: 775 TVRCN 779
Score = 119 (46.9 bits), Expect = 6.6e-31, Sum P(3) = 6.6e-31
Identities = 48/200 (24%), Positives = 88/200 (44%)
Query: 299 VGHVIKLTAQEEVALELRASQGVPVDINHGFSVD-FVWKSTSFDRMQGAMKTFAVDETSV 357
+G+V + ++++ S+ + H F F+ T+ R+ A+ A D T +
Sbjct: 149 LGYVFSVYGDSKISVHF--SRSISQSEKHTFCTGVFLINITTNTRIWNALHKDAADSTLI 206
Query: 358 SGYIYHHLLGHE----VEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQ-------RP 406
+ E E + + R +LN+SQ A+ L+
Sbjct: 207 QSVLQEDASATEQCFSCENDVDGSDSDRVVDIIRSAKLNSSQEAAILGFLKTRNCKHKES 266
Query: 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCA 466
+ LI GPPGTGKT T A ++ + Q + + +VCAP+N + +A ++ + + + +CA
Sbjct: 267 VKLIWGPPGTGKTKTVATLLSTLM-QLKCKTVVCAPTNTTIVAVASRLLSLSKETI-VCA 324
Query: 467 KSREAVSSPV---EHLTLHY 483
+ A++ V E TL Y
Sbjct: 325 PTNSAIAEVVSRFEFSTLFY 344
Score = 48 (22.0 bits), Expect = 6.6e-31, Sum P(3) = 6.6e-31
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 488 LDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADV 534
+D E +E Q + + + E + DEKK + ++ T +E+ AD+
Sbjct: 406 IDFLENTETKYEQHVNELELERMTEDEKKKEEVEERTMQEVDM-ADL 451
>UNIPROTKB|E2RBM4 [details] [associations]
symbol:PRIC285 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AAEX03014158 Ensembl:ENSCAFT00000020582 OMA:RCQYAHS
Uniprot:E2RBM4
Length = 2919
Score = 326 (119.8 bits), Expect = 2.9e-30, Sum P(4) = 2.9e-30
Identities = 113/339 (33%), Positives = 158/339 (46%)
Query: 442 PSNVAVDQL-AEKISATGLKVVRLCAKS-REA-VSSPVEHLTLHYQVRHLDTSEKSELHK 498
P V +Q A + G+ L KS RE + + +TLH++VR ++
Sbjct: 2511 PLRVYSEQAEATEFPVPGVGSRGLPKKSPREGRPNQTLRSITLHHRVRQSSNPYAPDIRD 2570
Query: 499 LQQLKDEQGE-LSSSDEKKYKA-LKRATEREISQSADVICCTCVGAGDPRLANFRFRQVL 556
+ ++GE LS D YK L +A + E+ Q VI CTC A L RQ+L
Sbjct: 2571 FDA-RLQKGEILSKEDLSWYKTILGKARKFELDQHR-VILCTCSCAASASLRKLDVRQIL 2628
Query: 557 IDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG 614
IDE+ ATEPE LIPLV +K +VVL+GDH QL PV+ ++ GL +SLFER
Sbjct: 2629 IDEAGMATEPETLIPLVAFSKAEKVVLLGDHKQLRPVVKNEQLQNLGLDRSLFERY---H 2685
Query: 615 LKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQM 674
+ L QYRMH + FPS FYE L+ + R S + +F +VQ
Sbjct: 2686 VDAHMLDTQYRMHEGICAFPSMEFYEKKLKTWQGLR-RPPSILGHIGKESCSVIFGHVQ- 2743
Query: 675 GQEEISASGTSYLNRTEAANVEKIVTTF-----LRSG--VVPSQIGVITPYEGQRAYIVN 727
G E+ T N AN E++ L G V P + ++TPY Q A I
Sbjct: 2744 GHEQSLLVSTDEGNENSKANPEEVAAVVRIAKQLTLGRTVEPKDVAILTPYNAQAAEISK 2803
Query: 728 YMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ R G + V S+ QG E Y+++S VR+
Sbjct: 2804 RLVREGV------SGVTVCSITKSQGSEWRYVLVSTVRT 2836
Score = 179 (68.1 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 88/267 (32%), Positives = 123/267 (46%)
Query: 518 KALKRATEREISQSADVICCTCVGAGDPRL-ANFRFRQVLIDESTQATEPECLIPLVLGA 576
+A + T E+ Q V+ T A + R+ A F F +LIDE+ Q E E L PL A
Sbjct: 875 RAFRAPTRAELEQHRIVVTTTSQ-ARELRVPAGF-FSHILIDEAAQMLECEALTPLRYAA 932
Query: 577 K--QVVLVGDHCQLGP-VIMCKKAARAG--LAQSLFE---RLVLLGLKPIRL--QVQYRM 626
+VVL GDH Q+ P + +A AG L LF+ R + RL YR
Sbjct: 933 PGTRVVLAGDHMQVTPRLFSVPRAQAAGHTLLYRLFQHYQREAHEVAQRSRLIFHQNYRS 992
Query: 627 HPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSY 686
++ F S FY + G I+ +SG P P + MF +V G E S TS+
Sbjct: 993 TEAILSFVSRHFY---VAKGSPIH---ASGRVPPHPRLHPLMFCHVA-GNPERDLSSTSW 1045
Query: 687 LNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYK----E 742
LN E A V + V L G PS G E + +V++ ++ ALRQ+L K +
Sbjct: 1046 LNAAEVAQVVEQVRD-LHDGW-PSCWGA---REQKHICVVSHGAQVTALRQELRKRNLGQ 1100
Query: 743 IEVASVDSFQGREKDYIILSCVRSNEH 769
+ V S + GRE ++LS V N H
Sbjct: 1101 VSVGSFEILPGREFRVVVLSTVH-NHH 1126
Score = 124 (48.7 bits), Expect = 2.9e-30, Sum P(4) = 2.9e-30
Identities = 35/86 (40%), Positives = 46/86 (53%)
Query: 383 FGAPGLPE-LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ----- 436
F PG P LN SQ AV++ L++ ++IQGPPGTGKTV + IV+ K + Q
Sbjct: 2414 FDLPGGPHTLNRSQNRAVRAALKKQFTVIQGPPGTGKTVVAFHIVFWFHKSNEEQTGACD 2473
Query: 437 -----------VLVCAPSNVAVDQLA 451
+L C PSN +VD LA
Sbjct: 2474 TPREKQLGGPCILYCGPSNKSVDVLA 2499
Score = 91 (37.1 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 379 LPRRFGAPGLPELNASQVFAVKSVL------QRPIS--LIQGPPGTGKTVTSAAIVYHMA 430
LP P + N Q AV + +RPI+ LI GP GTGKT T A +
Sbjct: 750 LPHPLPIPPAMQGNRKQKLAVAFIAGSSPGGRRPIAPLLIYGPFGTGKTYTLAMASLEVI 809
Query: 431 KQGQGQVLVCAPSNVAVDQLAEK 453
+Q +VL+C +N A D E+
Sbjct: 810 RQPHTKVLICTHTNSAADIYIEE 832
Score = 41 (19.5 bits), Expect = 2.9e-30, Sum P(4) = 2.9e-30
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 358 SGYIYHHLLGHEVEVQMVRNTLPRRFGAPG 387
+G+ H L+ ++ P R+ APG
Sbjct: 905 AGFFSHILIDEAAQMLECEALTPLRYAAPG 934
Score = 41 (19.5 bits), Expect = 2.9e-30, Sum P(4) = 2.9e-30
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 335 WKSTSFDRMQGAMKTFAVDETSVSGYIYHHL 365
W+ T +R GA+ + ++S ++ HHL
Sbjct: 1789 WQPTPGERQLGALCDKHQELVALSLHLRHHL 1819
Score = 38 (18.4 bits), Expect = 2.9e-30, Sum P(4) = 2.9e-30
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 221 ISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWDIGLNKK 261
+ A+T V + C++P ++ E +++ + W +N K
Sbjct: 401 VLAETVEGVSITCKQPLVHEAHEKKTQHS----WIFDVNSK 437
>UNIPROTKB|E1C4T7 [details] [associations]
symbol:Gga.18015 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654
GO:GO:0006302 GeneTree:ENSGT00580000081652 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:AADN02026516 IPI:IPI00575045
Ensembl:ENSGALT00000005801 Uniprot:E1C4T7
Length = 2503
Score = 330 (121.2 bits), Expect = 4.2e-30, Sum P(4) = 4.2e-30
Identities = 104/295 (35%), Positives = 148/295 (50%)
Query: 500 QQLKDEQGELS------SSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFR 553
Q L DE G LS +S K+ + + + +I +D+ICCT +G L + +R
Sbjct: 2133 QMLDDEIGRLSKERQQLASQLKEVRGHSQKVQTDIILESDIICCTLSTSGGGLLESAFWR 2192
Query: 554 Q-------VLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSL 606
Q V++DE+ Q+ E E LIPL+ ++VLVGD QL P I KA G QSL
Sbjct: 2193 QGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTIKSIKAQEYGYGQSL 2252
Query: 607 FERL-----------VLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSS 655
RL +L L ++L VQYRMHP + FPS+ Y+ TL+ E + S
Sbjct: 2253 MARLQRHLEEQVQNNLLRRLPVVQLTVQYRMHPDICLFPSSYIYDKTLKTDKATEENRCS 2312
Query: 656 GIDFPWPVPNRP-MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL--RSGVVPSQI 712
WP +P + F V G EE S+ N E V +I+ T R + +I
Sbjct: 2313 S---EWPF--QPYLVFDVGDGHEERDKD--SFSNPQEVKLVLEIIRTIKEKRKDLGLRRI 2365
Query: 713 GVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
G+ITPY Q+ I + R + E++ +VD+FQGREKD II++CVR+N
Sbjct: 2366 GIITPYSAQKKKIQEELDR--VFKNNSPGEVD--TVDAFQGREKDCIIVTCVRAN 2416
Score = 97 (39.2 bits), Expect = 4.2e-30, Sum P(4) = 4.2e-30
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM--------------AKQGQGQVLVCAPSNVAVDQLAE 452
I LI GPPGTGK+ T ++ + AK Q + LVCAPSN A+D+L +
Sbjct: 1982 ICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTSKKNAKIKQNRFLVCAPSNAAIDELMK 2041
Query: 453 KI 454
KI
Sbjct: 2042 KI 2043
Score = 50 (22.7 bits), Expect = 4.2e-30, Sum P(4) = 4.2e-30
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 281 DELRLRYSGDAAHPAWQSVGHVIKLTAQEEVA 312
++ R + +G+ +P+ GHV ++A+ E A
Sbjct: 1413 EKQREKQTGETFYPSVNERGHVTSISAENEAA 1444
Score = 47 (21.6 bits), Expect = 4.2e-30, Sum P(4) = 4.2e-30
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 232 LCREPCLNMMKESQSKDNVTIRWDIGLNKKRVAYFVF 268
+C + C NM ++ Q+ NV ++ DIG + RV + F
Sbjct: 376 ICPDYCPNMYEDMQTLANV-LQSDIGRDM-RVHHSTF 410
Score = 41 (19.5 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 92 LAATSSPSKRGANNSSNTSTSQIVEGMAGLS 122
LA PS+R + + ++ SQI + ++ LS
Sbjct: 944 LAVKCEPSERMVSGHNTSTNSQIDKELSKLS 974
Score = 41 (19.5 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 174 NTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLC 233
N + ++ ++ A KE C ++ PLG NCG + LG + V
Sbjct: 2033 NAAIDELMKKIIIA-FKEKCQNRQEPLG-------NCGDIKLVRLGAERSINSEV----- 2079
Query: 234 REPCLNMMKESQSKDNVTIRWDIGLNKKRVA 264
R L+ E + K T R D + KK+ A
Sbjct: 2080 RAFSLDKQVEHRMKRKPTDR-DQDIQKKKAA 2109
>UNIPROTKB|J9NRI6 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0017108 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852
EMBL:AAEX03002775 EMBL:AAEX03002776 EMBL:AAEX03002777
Ensembl:ENSCAFT00000046272 Uniprot:J9NRI6
Length = 640
Score = 317 (116.6 bits), Expect = 8.2e-30, Sum P(3) = 8.2e-30
Identities = 98/332 (29%), Positives = 170/332 (51%)
Query: 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGELSSSDEKKYKAL 520
V L + + AV + + L +++ L ++H+ +Q+ +E E+ S K K+L
Sbjct: 251 VLLTSYTHSAVDNILLKLA-KFKIGFLRLGRTQKVHQDIQKFTEE--EICRS--KPIKSL 305
Query: 521 KRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVV 580
A E+ S ++ TC+G P + F ++DE++Q ++P CL PL +++ V
Sbjct: 306 --ALLEELYNSHRIVATTCMGINHPIFSRKTFDFCIVDEASQISQPICLGPLFF-SQRFV 362
Query: 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYE 640
LVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+ + + Y+
Sbjct: 363 LVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYD 422
Query: 641 GTLQNG------VTINERQSSGI--------DF---PWPV----PNRPMFFYVQ---MGQ 676
G L+ G +N + D+ PW + PN P+ F
Sbjct: 423 GKLECGSDKVANAVVNLPNLKDVKLELEFYADYSENPWMIGAFEPNNPVCFLNTDKVPAP 482
Query: 677 EEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALR 736
E++ G S N TEA + + + F+++G PS IG+I PY Q+ I+N + + ++R
Sbjct: 483 EQVEKGGVS--NITEAKLIVFLTSVFIKAGCKPSDIGIIAPYR-QQLKIINDLLFHSSIR 539
Query: 737 QQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+EV +VD +QGR+K I++S VRSN+
Sbjct: 540 M-----VEVNTVDKYQGRDKSIILVSFVRSNK 566
Score = 86 (35.3 bits), Expect = 8.2e-30, Sum P(3) = 8.2e-30
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 202 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYTCGFS-VLLTSYTHSA 260
Query: 447 VDQLAEKISATGLKVVRL 464
VD + K++ + +RL
Sbjct: 261 VDNILLKLAKFKIGFLRL 278
Score = 45 (20.9 bits), Expect = 8.2e-30, Sum P(3) = 8.2e-30
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 24 CLMLTLESQSKDN 36
>UNIPROTKB|E1C0Z0 [details] [associations]
symbol:HELZ2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR007087 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 SMART:SM00355
SMART:SM00955 GO:GO:0008270 GO:GO:0003723 GO:GO:0005622
GO:GO:0004386 GO:GO:0004540 OMA:FRAAHIM PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 EMBL:AADN02019144 IPI:IPI00594758
Ensembl:ENSGALT00000009906 Uniprot:E1C0Z0
Length = 2565
Score = 299 (110.3 bits), Expect = 9.3e-30, Sum P(3) = 9.3e-30
Identities = 99/305 (32%), Positives = 149/305 (48%)
Query: 479 LTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYK-ALKRATEREISQSADVICC 537
+ LH+++R + ++ + + E++ + K++K L A E++ DVI C
Sbjct: 2197 IILHHRIRQPSNPKCQQICQFDRRVRAGEEITEEEIKQHKHTLMEARAYELA-CHDVILC 2255
Query: 538 TCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLG--AKQVVLVGDHCQLGPVIMCK 595
TC A L +Q+LIDE +TEPE LIPLV A++VVL+GDH QL PV+
Sbjct: 2256 TCSSASAGSLEKLNVKQILIDECAMSTEPETLIPLVSHKHAEKVVLLGDHKQLKPVVNND 2315
Query: 596 KAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSS 655
G+ SLFER + L QYRMH ++ EFPS FYE L+ + R S
Sbjct: 2316 FCKSLGMETSLFERYQK---QAWMLDTQYRMHKNICEFPSQEFYEHRLKTCPQLL-RIPS 2371
Query: 656 GIDFPWPVPNR--PMFFYVQMGQEEISASGTSYLNRTEAAN---VEKIVTTFLR---SGV 707
+ + NR P+ F G+E+ T N AN VE+ V T + G
Sbjct: 2372 VL---YHKNNRCCPIIFGHVEGKEQSLVISTEEGNENSKANPEEVEQAVRTAKQLTLDGT 2428
Query: 708 V-PSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ P I +++PY Q + I N L ++ + + V ++ QG E Y+ILS VRS
Sbjct: 2429 IRPQSIAILSPYNAQVSEI------NKRLLKEGIRGVTVCTIMKSQGSEWRYVILSTVRS 2482
Query: 767 -NEHQ 770
+ H+
Sbjct: 2483 CSRHE 2487
Score = 174 (66.3 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 79/273 (28%), Positives = 124/273 (45%)
Query: 515 KKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVL 574
K ++ + T EI + +I T + + ++A F ++IDE+ Q E E LIPL
Sbjct: 622 KDQRSFRHPTREEIDKHP-IIITTSMLSKHLKVAPGYFTHIMIDEAAQMLECEALIPLSY 680
Query: 575 GA--KQVVLVGDHCQLGPVIMCK---KAARAGLAQSLF-----ERLVLLGLKPIRLQVQY 624
++VL GDH Q+ P + C ++A L LF E+ + I Y
Sbjct: 681 ATFETRIVLAGDHMQITPKLFCVADGQSAYHTLLNRLFQFYQKEKHEVAMKSRIIFNENY 740
Query: 625 RMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN-RPMFFYVQMGQEEISASG 683
R + EF S FY G G I+ +SG + P P P P+ F G E S
Sbjct: 741 RSTAGIIEFVSKHFYIG---KGNAIH---ASG-NIP-PHPEIYPLMFCHVPGVAERDMSM 792
Query: 684 TSYLNRTEAANV-EKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYK- 741
S+ N +E V EK+ + R P + G + +R +V++ + A+RQ+L K
Sbjct: 793 ISWHNASEITQVVEKVEEIYQRW---PHEWGA---QDQKRICVVSHGVQVSAIRQELRKK 846
Query: 742 ---EIEVASVDSFQGREKDYIILSCVRSNEHQR 771
E+ V + ++ GRE II+S V ++E R
Sbjct: 847 QLPEVVVENYENLPGREFRVIIISTVHTSESLR 879
Score = 127 (49.8 bits), Expect = 9.3e-30, Sum P(3) = 9.3e-30
Identities = 49/168 (29%), Positives = 74/168 (44%)
Query: 319 QGVPVDINHG---FSVDFVWKSTSFDRMQGAM-KTFAVDETSVSGYIYHHLLGHEVEVQM 374
+ VP +I+ F+V+ + K R + A+ K + + S + H + V
Sbjct: 1991 ENVPAEISQASARFTVELIPKMLPDVRKENAIWKLQNASDLAKSIALGHEPPSKALTVTK 2050
Query: 375 VRNTLPRRFGAPGLP-ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG 433
+ + F PG +LN SQ AV + L +P +LIQGPPGTGKTV IVY K
Sbjct: 2051 SKILQQKSFDLPGSQRKLNPSQNKAVLNALTKPFTLIQGPPGTGKTVVGTHIVYWFHKLN 2110
Query: 434 QGQVLVCAPSNVAVDQLA--EKISATGLKVVRLCAKSREAVSSPVEHL 479
+ A +QL ++ G K + C S ++V E L
Sbjct: 2111 E--------EATAKEQLPCPDEDEPQGKKCILYCGPSNKSVDVVAEIL 2150
Score = 87 (35.7 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448
Q P LI GP GTGKT T A + +Q +VL+C +N A D
Sbjct: 533 QVPPLLIYGPFGTGKTFTLAMATLEVIRQPNTRVLICTHTNSAAD 577
Score = 51 (23.0 bits), Expect = 9.3e-30, Sum P(3) = 9.3e-30
Identities = 26/118 (22%), Positives = 53/118 (44%)
Query: 214 NVFLLGFISAKTESVVVLLCREP-CLNMMKESQSKDNVTIRWDIGLN-KKRVAYFVFPKE 271
N ++ + +E + +L +P L++ + +S N I LN ++R+ F+F +E
Sbjct: 298 NRIIVPSVVRTSEDMDLLAKYKPVALSLDSQRESSANAVIT---RLNYRERMHSFLFREE 354
Query: 272 DNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGF 329
+ E L+ +L LR H Q++ +K E+ E+ + D + G+
Sbjct: 355 EAEQALIA--KLNLRVLISLTH-MMQNLSMGMKFAQAGELFAEVPTPYNLSPDTDEGY 409
Score = 42 (19.8 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 179 HIVNHLVRAKHKEVCLHKDSPLGET-ILEC 207
H +N AK + C +D P G+ IL C
Sbjct: 2107 HKLNEEATAKEQLPCPDEDEPQGKKCILYC 2136
>POMBASE|SPBC29A10.10c [details] [associations]
symbol:SPBC29A10.10c "tRNA-splicing endonuclease
positive effector (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=ISO] [GO:0016180 "snRNA processing" evidence=ISO]
[GO:0035649 "Nrd1 complex" evidence=ISO] [GO:0043144 "snoRNA
processing" evidence=ISO] InterPro:IPR024714 PomBase:SPBC29A10.10c
GO:GO:0005524 GO:GO:0005634 EMBL:CU329671 GO:GO:0008033
eggNOG:COG1112 GO:GO:0006364 GO:GO:0004004 GO:GO:0006369
GO:GO:0043144 GO:GO:0016180 KO:K10706 GO:GO:0035649
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
OrthoDB:EOG4MPMZ6 PIR:T40065 RefSeq:NP_596055.1
ProteinModelPortal:O94387 EnsemblFungi:SPBC29A10.10c.1
GeneID:2540523 KEGG:spo:SPBC29A10.10c NextBio:20801650
Uniprot:O94387
Length = 1944
Score = 382 (139.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 111/343 (32%), Positives = 174/343 (50%)
Query: 443 SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLT--------LHYQVRHLDTSEKS 494
+N+ DQ A S T K + K R+++ +E L Q+R + T +K+
Sbjct: 1396 TNLKKDQEANNSSDTRKKYDSII-KKRDSLREDLEKFRSTGKNSSILEAQLREI-TKQKN 1453
Query: 495 ELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN--FRF 552
L+Q D+ E S + LK+ + ++ Q AD++C T +G L N F
Sbjct: 1454 ---MLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHELLLNAGLTF 1510
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
R V+IDE+ QA E +IPL G + V+VGD QL P ++ K +A+ G +QSL+ R+
Sbjct: 1511 RTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRMFK 1570
Query: 613 L-GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPV-PNRPMF- 669
L +QYRM+P +S FPS FY L +G ++ S PW P ++
Sbjct: 1571 QHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSR----PWHEDPQLGIYR 1626
Query: 670 FYVQMGQEEISASGTSYLNRTEAANV----EKIVTTFLRSGVVPSQIGVITPYEGQRAYI 725
F+ G E S S + Y N EA+ + E+++ +L +IGV+TPY Q +
Sbjct: 1627 FFNVHGTEAFSNSKSLY-NVEEASFILLLYERLIQCYLNIDF-EGKIGVVTPYRSQVQQL 1684
Query: 726 VNYMSRN-GALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ R G++ ++K +++ +VD FQG+EKD II SCVRS+
Sbjct: 1685 RSQFQRKYGSI---IFKHLDIHTVDGFQGQEKDIIIFSCVRSS 1724
Score = 37 (18.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 266 FVFPKEDNELRLVPGDE 282
F+F DN++++V ++
Sbjct: 735 FIFGLSDNDIKIVSAND 751
>DICTYBASE|DDB_G0285243 [details] [associations]
symbol:DDB_G0285243 "putative splicing endonuclease"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0285243 EMBL:AAFI02000076 KO:K10706
InterPro:IPR024481 Pfam:PF12726 RefSeq:XP_002649136.1
ProteinModelPortal:C7G036 EnsemblProtists:DDB0252844 GeneID:8625002
KEGG:ddi:DDB_G0285243 OMA:DSINMIF Uniprot:C7G036
Length = 2069
Score = 363 (132.8 bits), Expect = 3.0e-29, P = 3.0e-29
Identities = 107/338 (31%), Positives = 171/338 (50%)
Query: 444 NVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK 503
N A+ +K T LK++++ K E + ++ L + + D ++E+ KL +
Sbjct: 1492 NSAIANEDQKKENTRLKIIKIKEKQVE-IDKQIKDLAERLKQQE-DNKLRNEITKLNYTR 1549
Query: 504 DEQG---ELSSSDEKK----YKALKRATEREISQSADVICCTCVGAGDPRL--ANFRFRQ 554
++ +L+ +E++ Y KR I + +I T G+G L A F
Sbjct: 1550 EKYNNDLKLAKDEERRFHEQYSNTKRNLYINIIGRSQIILSTLSGSGYDYLFTATKNFDL 1609
Query: 555 VLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG 614
V++DE+ QA E LIPL K+ +LVGD QL P + K A + SLF+RL+ G
Sbjct: 1610 VIVDEAAQAVELSTLIPLRHDVKKCILVGDPQQLPPTTISKVATKFQYEISLFQRLMNCG 1669
Query: 615 LKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR--PMFFYV 672
+ P L+ QYRMHP +S+FPS FY G L++G + E + D+ +R P+ FY
Sbjct: 1670 MAPTVLKTQYRMHPMISKFPSKIFYRGELEDGKNVREYKQ---DYYNDSASRFGPLVFYD 1726
Query: 673 QMGQE-EISASGTSYLNRTEAANVEKIVTTFLRS--GVVPSQIGVITPYEGQRAYIVNYM 729
+ E+ +S S N TE + IV + + +IGVITPY+ Q + N
Sbjct: 1727 LFDKHGEVRSSFFSLRNPTEVKLAKLIVDQLISNYPNTKDLEIGVITPYKSQSVDLFNAF 1786
Query: 730 SRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
G Y+ +EV+++D FQG+EKD++I S VR++
Sbjct: 1787 K--G------YQNVEVSTIDGFQGKEKDFVIFSSVRAH 1816
Score = 150 (57.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 47/136 (34%), Positives = 75/136 (55%)
Query: 391 LNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAI--VY-----HMAKQ-GQGQVLVC 440
LN SQ+ A+ S L+ SL+QGPPGTGKT T ++ V+ ++ K ++LVC
Sbjct: 1372 LNESQLSAIASTLKNLGGFSLLQGPPGTGKTKTILSLLSVFTTVLTNIEKSHSDPKILVC 1431
Query: 441 APSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQ 500
APSN AVD++A +I GL + + K + + +H V+ D S +S + L
Sbjct: 1432 APSNAAVDEIALRIKKDGL-IDKNGNKFKPVICRIGNQSHIHPSVQ--DISVESLI--LG 1486
Query: 501 QLKDEQGELSSSDEKK 516
+ KD+ +++ D+KK
Sbjct: 1487 EYKDKNSAIANEDQKK 1502
>UNIPROTKB|F6UZP1 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 OMA:EHESLCH Ensembl:ENSCAFT00000021752
EMBL:AAEX03002775 EMBL:AAEX03002776 EMBL:AAEX03002777
Uniprot:F6UZP1
Length = 1021
Score = 317 (116.6 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 98/332 (29%), Positives = 170/332 (51%)
Query: 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGELSSSDEKKYKAL 520
V L + + AV + + L +++ L ++H+ +Q+ +E E+ S K K+L
Sbjct: 640 VLLTSYTHSAVDNILLKLA-KFKIGFLRLGRTQKVHQDIQKFTEE--EICRS--KPIKSL 694
Query: 521 KRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVV 580
A E+ S ++ TC+G P + F ++DE++Q ++P CL PL +++ V
Sbjct: 695 --ALLEELYNSHRIVATTCMGINHPIFSRKTFDFCIVDEASQISQPICLGPLFF-SQRFV 751
Query: 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYE 640
LVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+ + + Y+
Sbjct: 752 LVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYD 811
Query: 641 GTLQNG------VTINERQSSGI--------DF---PWPV----PNRPMFFYVQ---MGQ 676
G L+ G +N + D+ PW + PN P+ F
Sbjct: 812 GKLECGSDKVANAVVNLPNLKDVKLELEFYADYSENPWMIGAFEPNNPVCFLNTDKVPAP 871
Query: 677 EEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALR 736
E++ G S N TEA + + + F+++G PS IG+I PY Q+ I+N + + ++R
Sbjct: 872 EQVEKGGVS--NITEAKLIVFLTSVFIKAGCKPSDIGIIAPYR-QQLKIINDLLFHSSIR 928
Query: 737 QQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+EV +VD +QGR+K I++S VRSN+
Sbjct: 929 M-----VEVNTVDKYQGRDKSIILVSFVRSNK 955
Score = 86 (35.3 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 591 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYTCGFS-VLLTSYTHSA 649
Query: 447 VDQLAEKISATGLKVVRL 464
VD + K++ + +RL
Sbjct: 650 VDNILLKLAKFKIGFLRL 667
Score = 45 (20.9 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 413 CLMLTLESQSKDN 425
>UNIPROTKB|E2QSH2 [details] [associations]
symbol:E2QSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
Ensembl:ENSCAFT00000021752 Uniprot:E2QSH2
Length = 1040
Score = 317 (116.6 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 98/332 (29%), Positives = 170/332 (51%)
Query: 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGELSSSDEKKYKAL 520
V L + + AV + + L +++ L ++H+ +Q+ +E E+ S K K+L
Sbjct: 671 VLLTSYTHSAVDNILLKLA-KFKIGFLRLGRTQKVHQDIQKFTEE--EICRS--KPIKSL 725
Query: 521 KRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVV 580
A E+ S ++ TC+G P + F ++DE++Q ++P CL PL +++ V
Sbjct: 726 --ALLEELYNSHRIVATTCMGINHPIFSRKTFDFCIVDEASQISQPICLGPLFF-SQRFV 782
Query: 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYE 640
LVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+ + + Y+
Sbjct: 783 LVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYD 842
Query: 641 GTLQNG------VTINERQSSGI--------DF---PWPV----PNRPMFFYVQ---MGQ 676
G L+ G +N + D+ PW + PN P+ F
Sbjct: 843 GKLECGSDKVANAVVNLPNLKDVKLELEFYADYSENPWMIGAFEPNNPVCFLNTDKVPAP 902
Query: 677 EEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALR 736
E++ G S N TEA + + + F+++G PS IG+I PY Q+ I+N + + ++R
Sbjct: 903 EQVEKGGVS--NITEAKLIVFLTSVFIKAGCKPSDIGIIAPYR-QQLKIINDLLFHSSIR 959
Query: 737 QQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+EV +VD +QGR+K I++S VRSN+
Sbjct: 960 M-----VEVNTVDKYQGRDKSIILVSFVRSNK 986
Score = 86 (35.3 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 622 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYTCGFS-VLLTSYTHSA 680
Query: 447 VDQLAEKISATGLKVVRL 464
VD + K++ + +RL
Sbjct: 681 VDNILLKLAKFKIGFLRL 698
Score = 45 (20.9 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 444 CLMLTLESQSKDN 456
>TAIR|locus:2135472 [details] [associations]
symbol:AT4G05540 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002687 GO:GO:0004386
KO:K10706 IPI:IPI00530269 RefSeq:NP_567301.2 UniGene:At.54170
ProteinModelPortal:F4JGH5 SMR:F4JGH5 PRIDE:F4JGH5
EnsemblPlants:AT4G05540.1 GeneID:825906 KEGG:ath:AT4G05540
OMA:WVIGNER Uniprot:F4JGH5
Length = 689
Score = 302 (111.4 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 86/244 (35%), Positives = 125/244 (51%)
Query: 530 QSADVICCTCVGAGDPRLANF-RFRQVLIDESTQATEPECLIPLVL-GAKQVVLVGDHCQ 587
Q+A +I CT GA + +++DE+ Q E E + L L G VL+GD Q
Sbjct: 408 QNAHIIFCTASGAAEMTAERAGSIDMLVVDEAAQLKECESVAALQLQGLHHAVLIGDELQ 467
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
L ++ + +A +SLFERL LG K L VQYRMHPS+S FP+ FY G + +
Sbjct: 468 LPAMVQSEVCEKAKFVRSLFERLDSLGHKKHLLNVQYRMHPSISLFPNMEFYGGKISDAE 527
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR-SG 706
+ E + F V +G+EE G S N E A V +I+T L+ S
Sbjct: 528 IVKESTYQKRFLQGNMFGSFSFINVGLGKEEFG-DGHSPKNMVEIAVVSEILTNLLKVSS 586
Query: 707 VVPSQ--IGVITPYEGQRAYIVNYMS-RNGALRQQLYKEIEVASVDSFQGREKDYIILSC 763
++ +GVI+PY+ Q + I + + ++ L+ + V SVD FQG E+D II+S
Sbjct: 587 ETKTKMSVGVISPYKAQVSAIQERIGDKYTSVSDNLFT-LNVRSVDGFQGGEEDIIIIST 645
Query: 764 VRSN 767
VRSN
Sbjct: 646 VRSN 649
Score = 95 (38.5 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 391 LNASQVFAVKSVLQR-------PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
LN+SQ A+ + L+ + LI GPPGTG T T A +++ + + +VC P+
Sbjct: 109 LNSSQESAILACLETREIRDKTSVKLIWGPPGTGNTKTVATLLFALLSLSC-KTVVCTPT 167
Query: 444 NVAVDQLAEKISA 456
N AV +A ++ A
Sbjct: 168 NTAVVAVASRLLA 180
>UNIPROTKB|F1PHA4 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006302 "double-strand break repair"
evidence=IEA] InterPro:IPR026121 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:AAEX03006816 EMBL:AAEX03006817 Ensembl:ENSCAFT00000031656
Uniprot:F1PHA4
Length = 2531
Score = 302 (111.4 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 102/302 (33%), Positives = 153/302 (50%)
Query: 492 EKSEL-HKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN- 549
++ EL K+ ++ E+ EL+S K+ + + T+ I + VICCT +G L +
Sbjct: 2131 QRQELDEKIAKVSKERQELASKI-KEVQGRPQKTQSIIILESHVICCTLSTSGGLLLESA 2189
Query: 550 FR------FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLA 603
FR F V++DE+ Q+ E E L PL+ +++LVGD QL P ++ KA G
Sbjct: 2190 FRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYD 2249
Query: 604 QSL---FERLV-------LLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQ-NGVTINE 651
QS+ F +L+ ++G P+ +L VQYRMHP + FPSN Y +L+ N T
Sbjct: 2250 QSMMARFYKLLEDNVEHNMIGRLPVLQLTVQYRMHPDICLFPSNYVYNRSLKTNRQTETN 2309
Query: 652 RQSSGIDFPWPVPNRP-MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL--RSGVV 708
R SS WP +P + F V G E SY+N E V +I+ R V
Sbjct: 2310 RCSSD----WPF--QPYLVFDVGDGSER--RDNDSYVNVQEIKLVMEIIKLIKDKRRDVT 2361
Query: 709 PSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
IG+IT Y+ Q+ I + + + EV +VD FQGR+KD +I++CVR+N
Sbjct: 2362 FRNIGIITHYKAQKTMIQKDLDKEFDRKGPA----EVDTVDGFQGRQKDCVIVTCVRANA 2417
Query: 769 HQ 770
Q
Sbjct: 2418 MQ 2419
Score = 111 (44.1 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLA 451
I LI GPPGTGK+ T ++Y + AK Q +VLVCAPSN AVD+L
Sbjct: 1981 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELM 2040
Query: 452 EKI 454
+KI
Sbjct: 2041 KKI 2043
Score = 49 (22.3 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 491 SEKSELHKLQQLKDEQGELSSSDEKKYK 518
S KS L K +QLK E+ ++ S E Y+
Sbjct: 868 SHKSLLLKKKQLKSEEFDIFSYHENSYQ 895
Score = 45 (20.9 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 174 NTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + ++ ++ + KE C K +PLG NCG N+ LG
Sbjct: 2033 NAAVDELMKKII-LEFKEKCKDKKNPLG-------NCGDINLVRLG 2070
>UNIPROTKB|E1BAS6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:DAAA02032276 EMBL:DAAA02032274 EMBL:DAAA02032275
IPI:IPI00842535 Ensembl:ENSBTAT00000042924 Uniprot:E1BAS6
Length = 2662
Score = 305 (112.4 bits), Expect = 2.8e-28, Sum P(3) = 2.8e-28
Identities = 102/303 (33%), Positives = 156/303 (51%)
Query: 491 SEKSELH-KLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRL-A 548
S++ EL K+ ++ E+ EL+S K+ + + T+ I + +ICCT +G L A
Sbjct: 2097 SQRQELDGKIARVSKERQELASKI-KEVQGRPQKTQSIIILESHIICCTLSTSGGLLLEA 2155
Query: 549 NFR------FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGL 602
FR F V++DE+ Q+ E E L PL+ ++VLVGD QL P ++ KA G
Sbjct: 2156 AFRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRCNKLVLVGDPKQLPPTVISVKAQDYGY 2215
Query: 603 AQSL---FERLV-------LLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQ-NGVTIN 650
QS+ F +L+ ++G P+ +L +QYRMHP + FPS+ Y+G L+ N T
Sbjct: 2216 DQSMMARFHKLLEESVEHNMIGRLPVLQLTIQYRMHPDICLFPSSYIYDGILRTNRGTET 2275
Query: 651 ERQSSGIDFPWPVPNRP-MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL--RSGV 707
R SS WP +P + F V G E SY+N E V +++ R V
Sbjct: 2276 SRCSSD----WPF--QPYLVFDVGDGLER--RDNDSYVNVQEIKLVMELIKLIKDKRRDV 2327
Query: 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
IG+IT Y+ Q+ I + + + EV +VD+FQGR+KD +I++CVR+N
Sbjct: 2328 TFRNIGIITHYKAQKTMIQKDLDKEFDRKGAA----EVDTVDAFQGRQKDCVIVTCVRAN 2383
Query: 768 EHQ 770
Q
Sbjct: 2384 ATQ 2386
Score = 113 (44.8 bits), Expect = 2.8e-28, Sum P(3) = 2.8e-28
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLA 451
I LI GPPGTGK+ T I+Y + AK Q +VLVCAPSN AVD+L
Sbjct: 1948 ICLIHGPPGTGKSKTIVGILYRLLTENQRRGYSDENSNAKIKQNRVLVCAPSNAAVDELM 2007
Query: 452 EKI 454
+KI
Sbjct: 2008 KKI 2010
Score = 45 (20.9 bits), Expect = 2.8e-28, Sum P(3) = 2.8e-28
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 232 LCREPCLNMMKESQSKDNVTIRWDIG 257
+C + C NM +E ++ NV ++ DIG
Sbjct: 374 ICPDYCPNMYEEMETLANV-LQSDIG 398
Score = 43 (20.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 174 NTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + ++ ++ + KE C K +P+G NCG N+ LG
Sbjct: 2000 NAAVDELMKKII-LEFKEKCKDKKNPMG-------NCGDINLVRLG 2037
>TAIR|locus:2018561 [details] [associations]
symbol:AT1G65810 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
EMBL:CP002684 GO:GO:0004386 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI01019905 RefSeq:NP_176757.1
UniGene:At.52388 ProteinModelPortal:F4IBK8 SMR:F4IBK8 PRIDE:F4IBK8
EnsemblPlants:AT1G65810.1 GeneID:842892 KEGG:ath:AT1G65810
OMA:DSEINKR ArrayExpress:F4IBK8 Uniprot:F4IBK8
Length = 1050
Score = 291 (107.5 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 99/332 (29%), Positives = 166/332 (50%)
Query: 442 PSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ 501
P+++ ++AEK++ T ++R A S + + + Y+++ DT ++++ + Q
Sbjct: 451 PTSLLSFRVAEKMNQTN-NLLRNIAAS-DVMRDGYGRMK--YKLK--DTGDEND-SRTQD 503
Query: 502 LKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDEST 561
+ +S S + K ++ +A ++ CT + +++ + ++IDE+
Sbjct: 504 CLEMLTSISMSIKLPDFISKFELQKLCLDNAYLLFCTASSSARLHMSS-PIQLLVIDEAA 562
Query: 562 QATEPECLIPLVL-GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRL 620
Q E E IPL L G + +L+GD QL +I A+ A L +SLFERLVLLG L
Sbjct: 563 QLKECESAIPLQLRGLQHAILIGDEKQLPAMIKSNIASEADLGRSLFERLVLLGHNKQLL 622
Query: 621 QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEIS 680
+QYRMHPS+S FP+ FY+ + + ++ R P + F + G+E+
Sbjct: 623 NMQYRMHPSISIFPNREFYDMKILDAPSVRLRSYEKKFLPEKMYGPYSFINIAYGREQFG 682
Query: 681 ASGTSYLNRTEAANVEKIVTTFL----RSGVVPSQIGVITPYEGQRAYIVNYMSRNGA-L 735
G S N E + V +IV+ ++G S +GVI+PY+ Q + R G
Sbjct: 683 -EGYSSKNLVEVSVVAEIVSKLYSVSRKTGRTIS-VGVISPYKAQ---VFAIQERIGEKY 737
Query: 736 RQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ + V SVD FQG E+D II+S VRSN
Sbjct: 738 NTEGTFTVSVRSVDGFQGGEEDIIIISTVRSN 769
Score = 106 (42.4 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 390 ELNASQVFAVKSVLQRP-------ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442
+LN+SQ A+ L+ I LI GPPGTGKT T++ ++ + K + + L CAP
Sbjct: 266 KLNSSQEDAILRCLEAKSCNHSNNIKLIWGPPGTGKTKTTSVLLLNFLKM-RCRTLTCAP 324
Query: 443 SNVAVDQLAEKI 454
+N+AV ++ ++
Sbjct: 325 TNIAVLEVCSRL 336
>TAIR|locus:2152627 [details] [associations]
symbol:AT5G37030 species:3702 "Arabidopsis thaliana"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] EMBL:CP002688 GO:GO:0004519 KO:K10706
IPI:IPI00540124 RefSeq:NP_198519.1 UniGene:At.55172
ProteinModelPortal:F4K5V7 SMR:F4K5V7 PRIDE:F4K5V7
EnsemblPlants:AT5G37030.1 GeneID:833673 KEGG:ath:AT5G37030
Uniprot:F4K5V7
Length = 638
Score = 315 (115.9 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 82/229 (35%), Positives = 120/229 (52%)
Query: 555 VLIDESTQATEPECLIPLVL-GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL 613
+++DE+ Q E E + L L G + +L+GD QL ++ + +A +SLFERLVLL
Sbjct: 351 LVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHNDQCEKAKFGRSLFERLVLL 410
Query: 614 GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQ 673
G K L VQYRMHPS+S FP FY G +++ + E + F V
Sbjct: 411 GHKKHLLDVQYRMHPSISRFPYKEFYGGRIKDAANVQESIYQKRFLQGNMFGSFSFINVG 470
Query: 674 MGQEEISASGTSYLNRTEAANVEKIVTTFL---RSGVVPSQIGVITPYEGQ-RAYIVNYM 729
G+EE G S N E A V +I++ R + +GVITPY+GQ RA
Sbjct: 471 RGKEEFG-DGDSPKNMVEVAVVSEIISNLFKVSRERKMKMSVGVITPYKGQVRAIQERIR 529
Query: 730 SRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
+ +L +L+ + V SVD FQG E+D II+S VRSN + + ++ +
Sbjct: 530 DKYSSLSGELFT-VNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLSNR 577
Score = 70 (29.7 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 390 ELNASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442
+LN+SQ A+ S L+ + LI GP T KTV + +V + K + + +VCAP
Sbjct: 203 KLNSSQEAAILSCLETRDSNHKNSVKLIWGPLKT-KTVATLLLV--LLKL-RCKTVVCAP 258
Query: 443 SNVAVDQLAEKISATGLK 460
+N A+ ++ ++ A K
Sbjct: 259 TNTAIVEVTSRLLALSNK 276
Score = 37 (18.1 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 296 W-QSVGHVI---KLTAQEEVALELRASQGVPVDINHGFSVDFVW 335
W Q+V +I KL + +E A+ L + D NH SV +W
Sbjct: 191 WGQNVLDIIRSSKLNSSQEAAI-LSCLE--TRDSNHKNSVKLIW 231
>DICTYBASE|DDB_G0274399 [details] [associations]
symbol:DDB_G0274399 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR003593 SMART:SM00382
dictyBase:DDB_G0274399 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000012 GO:GO:0004386 eggNOG:COG1112 RefSeq:XP_644230.1
ProteinModelPortal:Q86AS0 EnsemblProtists:DDB0237968 GeneID:8619659
KEGG:ddi:DDB_G0274399 OMA:LIMISLH Uniprot:Q86AS0
Length = 967
Score = 311 (114.5 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 108/344 (31%), Positives = 150/344 (43%)
Query: 436 QVLVCAPSNVAVDQLAEKI------SATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD 489
++L+CAPSN AVD++ ++ +A G K + S VE ++L Y VR
Sbjct: 463 RILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVGPGSHSDVESVSLDYMVRCRQ 522
Query: 490 TSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN 549
S S S T + AD++ T +G L
Sbjct: 523 QLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTL--VLDEADIVATTLSFSGASLLTK 580
Query: 550 FR--FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLF 607
F V+IDE+ QA E LIP+ G K+VVLVGD QL I+ A + QSLF
Sbjct: 581 MAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVGDPKQLPATIISPLAIKYKYDQSLF 640
Query: 608 ERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRP 667
+RL P L QYRMH + FPS FY+ L +G I R + P+ P
Sbjct: 641 QRLQEKN-SPHMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRATHYHSNPF---FGP 696
Query: 668 MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP-----SQIGVITPYEGQR 722
+ FY E G S N E + F + V P S+IG+I+PY Q+
Sbjct: 697 LVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQLFTK--VYPDEDFASRIGIISPYR-QQ 753
Query: 723 AYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ + +N Y I + +VD FQGRE++ II SCVR+
Sbjct: 754 VLALREIFKN-------YPGISIDTVDGFQGREREIIIFSCVRA 790
Score = 80 (33.2 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 392 NASQVFAVKSVLQ-RPISLIQGPPGTGKT 419
N SQ+ A+ S L+ I+LIQGPPGTGKT
Sbjct: 336 NDSQLNALTSALEGNAITLIQGPPGTGKT 364
>UNIPROTKB|F1RMM8 [details] [associations]
symbol:LOC100519780 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045944 "positive regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
OMA:FRAAHIM PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:FP102633 Ensembl:ENSSSCT00000003670 Uniprot:F1RMM8
Length = 2879
Score = 287 (106.1 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 90/307 (29%), Positives = 151/307 (49%)
Query: 470 EAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKY--KALKRATERE 527
E + + +TLH+++R +++ + + GE S D+ ++ K L+ A + E
Sbjct: 2504 ERPNQTLRSITLHHRIRQASNPYAADIRAFDA-RLQNGETFSQDDLRWYRKVLQEARKFE 2562
Query: 528 ISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDH 585
+ + V+ CTC A L + RQ+L+DE+ A+EPE LIPLV ++ +VVL+GDH
Sbjct: 2563 VDRHR-VLLCTCSCAASASLRDVNIRQILVDEAGLASEPETLIPLVSFSQVEKVVLLGDH 2621
Query: 586 CQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQN 645
QL PV+ ++ GL +SL +R L +QY +H S+ FPS FY+ L+
Sbjct: 2622 KQLRPVVKSEQLQNLGLDRSLLQRY---RRDASMLDLQYCVHESICAFPSMEFYKKKLKT 2678
Query: 646 GVTINERQSSGIDFPWPVPNRPMFFY-VQMGQEEISAS---G--TSYLNRTEAANVEKIV 699
+ R I + N + F VQ +E + S G S +N+ +AA V +
Sbjct: 2679 WQGL--RLPPSI-LGYGKENCSVIFGDVQSPEESLVVSTEEGRENSKVNKEQAALVVCLA 2735
Query: 700 TTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYI 759
+ V P + ++TPY Q ++ R L + + V S+ QGR+ Y+
Sbjct: 2736 KQLVSGRVDPKDMAILTPYHAQ---VLEISKR---LEEARVAGVTVCSITKSQGRQWRYV 2789
Query: 760 ILSCVRS 766
++S VR+
Sbjct: 2790 LVSTVRT 2796
Score = 149 (57.5 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 75/266 (28%), Positives = 115/266 (43%)
Query: 518 KALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPL--VLG 575
+A + T E+ Q V+ G A F F + IDE+ Q E E L PL
Sbjct: 872 QAFRPPTRAELEQHRVVVASATQARGLRVPAGF-FSHIFIDEAAQMLEWEALTPLRYATP 930
Query: 576 AKQVVLVGDHCQLGPVIMCKKAAR-AG------LAQSLFERLVLLGLKP-IRLQVQYRMH 627
+VVL GDH ++ P + A R AG L Q E+ + + + L YR
Sbjct: 931 GTRVVLAGDHMRVAPRLFSAAAGRIAGPTLLHRLLQHFREQAPAVAQRSCVILCKNYRST 990
Query: 628 PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR-PMFFYVQMGQEEISASGTSY 686
++ F S F ++ +G + +SG P P P+R P+ F G E S TS+
Sbjct: 991 EAIVRFVSRHF---SMASG---SRPHASG-KIP-PHPHRYPLLFCHAAGVPEQDVSMTSW 1042
Query: 687 LNRTEAANV-EKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYK---- 741
LN E V EK+ + P G+ E + +V+ ++ ALRQ+L K
Sbjct: 1043 LNAAEVVQVVEKVQEVY---NTWPHCWGL---REQKDICVVSCGAQVSALRQELRKRDLG 1096
Query: 742 EIEVASVDSFQGREKDYIILSCVRSN 767
++ V S + GR ++LS V ++
Sbjct: 1097 QVSVCSFEILPGRAFRVVVLSTVHNH 1122
Score = 117 (46.2 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 34/87 (39%), Positives = 47/87 (54%)
Query: 383 FGAPG-LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--------- 432
F PG L +LN SQ AV+ L++ ++I GPPGTGKTV I Y + +
Sbjct: 2376 FDMPGGLHKLNPSQNTAVREALKKQFTVIHGPPGTGKTVVGLHIAYWLCQSNEQAAARGP 2435
Query: 433 --GQGQV-----LVCAPSNVAVDQLAE 452
G Q+ L+C+PS+ +VD LAE
Sbjct: 2436 HGGDEQMGGPCLLLCSPSSKSVDVLAE 2462
Score = 74 (31.1 bits), Expect = 9.7e-23, Sum P(2) = 9.7e-23
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 405 RPIS--LIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ-LAE 452
RP++ L+ GP GTGKT A + +Q +VL+C +N D +AE
Sbjct: 779 RPVAPLLVCGPFGTGKTYALAMASLEVIRQPGTKVLICTHTNSTADSYIAE 829
>TAIR|locus:2018536 [details] [associations]
symbol:AT1G65780 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002684 GO:GO:0004386
KO:K10706 InterPro:IPR026852 PANTHER:PTHR10887:SF27 IPI:IPI00534309
RefSeq:NP_176754.1 UniGene:At.52386 ProteinModelPortal:F4IBK4
SMR:F4IBK4 PRIDE:F4IBK4 EnsemblPlants:AT1G65780.1 GeneID:842889
KEGG:ath:AT1G65780 Uniprot:F4IBK4
Length = 1065
Score = 289 (106.8 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 77/218 (35%), Positives = 111/218 (50%)
Query: 555 VLIDESTQATEPECLIPLVL-GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL 613
++IDE+ Q E E IP+ L G + ++LVGD QL ++ + A AG +SLFERL LL
Sbjct: 567 LVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQIALEAGFGRSLFERLALL 626
Query: 614 GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQ 673
G K L +QYRMH S+S FP+ Y + + T+ +R + P + F +
Sbjct: 627 GHKKYMLNIQYRMHCSISSFPNKELYGKKILDAPTVRQRNYTKQYLPGEMYGPYSFINIA 686
Query: 674 MGQEEIS-ASGTSYLNRTEAANVEKIVTTFLR-SGVVPSQI--GVITPYEGQRAYIVNYM 729
G+EE G S N E V I+ L+ S ++I GVI+PY+ Q I +
Sbjct: 687 YGREEYGEGEGRSLKNNVEVVVVAAIIANLLQVSEKTKTRINVGVISPYKAQVIAIQEKI 746
Query: 730 SRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
+ + +VD FQG E+D II+S VRSN
Sbjct: 747 QETSIGDAGGLFSLRIRTVDGFQGGEEDIIIVSTVRSN 784
Score = 103 (41.3 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 380 PRRFGAPGLPELNASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432
PRRF L +LN SQ A+ + L + LI GPPGTGKT T++ +++ +
Sbjct: 232 PRRF----L-KLNPSQEDAILNCLDVRRCYHANTVRLIWGPPGTGKTKTTSVLLFTLLN- 285
Query: 433 GQGQVLVCAPSNVAVDQLAEKI 454
+ + L C P+NV+V ++A ++
Sbjct: 286 AKCRTLTCGPTNVSVLEVASRV 307
>UNIPROTKB|F1S0U6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
KO:K10706 GeneTree:ENSGT00580000081652 CTD:23064 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:CU550727 EMBL:CU914573
RefSeq:XP_003353743.1 UniGene:Ssc.45527 Ensembl:ENSSSCT00000006294
GeneID:100511239 KEGG:ssc:100511239 Uniprot:F1S0U6
Length = 2661
Score = 300 (110.7 bits), Expect = 7.4e-27, Sum P(4) = 7.4e-27
Identities = 102/302 (33%), Positives = 152/302 (50%)
Query: 492 EKSELH-KLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN- 549
++ EL K+ ++ E+ EL+S K+ + + T+ I + +ICCT +G L +
Sbjct: 2102 QRRELDGKIAEVSKERQELASKI-KEVQGRPQKTQNTIILESHIICCTLSTSGGLLLESA 2160
Query: 550 FR------FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLA 603
FR F V++DE+ Q+ E E L PL+ ++VLVGD QL P ++ KA G
Sbjct: 2161 FRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRCNKLVLVGDPKQLPPTVISMKAQDYGYD 2220
Query: 604 QSL---FERLV-------LLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQ-NGVTINE 651
QS+ F +L+ ++G PI +L VQYRMHP + FPSN Y L+ N +T
Sbjct: 2221 QSMMARFYKLLEENVEHNVIGRLPILQLTVQYRMHPDICLFPSNYIYNRNLKTNSLTEAS 2280
Query: 652 RQSSGIDFPWPVPNRP-MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL--RSGVV 708
R SS WP +P + F V G E SY+N E V +I+ R V
Sbjct: 2281 RCSSD----WPF--QPYLVFDVGDGSER--RDNDSYVNVQEIKLVMEIIKLIKDKRRDVT 2332
Query: 709 PSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
IG+IT Y+ Q+ I + + + EV +VD FQGR+KD +I++CVR+
Sbjct: 2333 FRNIGIITHYKAQKTLIQKDLDKEFDRKGPA----EVDTVDGFQGRQKDCVIVTCVRAKT 2388
Query: 769 HQ 770
Q
Sbjct: 2389 SQ 2390
Score = 111 (44.1 bits), Expect = 7.4e-27, Sum P(4) = 7.4e-27
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLA 451
I LI GPPGTGK+ T ++Y + AK Q +VLVCAPSN AVD+L
Sbjct: 1952 ICLIHGPPGTGKSKTIVGLLYRLLTENQRRGHSDENSNAKIKQNRVLVCAPSNAAVDELM 2011
Query: 452 EKI 454
+KI
Sbjct: 2012 KKI 2014
Score = 45 (20.9 bits), Expect = 7.4e-27, Sum P(4) = 7.4e-27
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 232 LCREPCLNMMKESQSKDNVTIRWDIG 257
+C + C NM +E ++ NV ++ DIG
Sbjct: 374 ICPDYCPNMYEEMETLANV-LQSDIG 398
Score = 44 (20.5 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 174 NTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + ++ ++ + KE C K +PLG NCG N+ LG
Sbjct: 2004 NAAVDELMKKII-LEFKEKCKDKRNPLG-------NCGDINLVRLG 2041
Score = 40 (19.1 bits), Expect = 7.4e-27, Sum P(4) = 7.4e-27
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 285 LRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVD 332
L Y+GD + ++ + ++E +E Q V + + +D
Sbjct: 1110 LTYTGDITNDWGYDTDYIYEQVSREVEGVEQAEPQSSSVSVKEFYEID 1157
>ZFIN|ZDB-GENE-061013-333 [details] [associations]
symbol:zgc:154086 "zgc:154086" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND]
ZFIN:ZDB-GENE-061013-333 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 PROSITE:PS51192 InterPro:IPR025223 Pfam:PF14444
HOVERGEN:HBG052382 KO:K13983 InterPro:IPR026125
PANTHER:PTHR10887:SF6 HOGENOM:HOG000015363 EMBL:BC124807
IPI:IPI00611882 RefSeq:NP_001070795.1 UniGene:Dr.40096
ProteinModelPortal:Q08BA5 GeneID:768184 KEGG:dre:768184
NextBio:20918499 Uniprot:Q08BA5
Length = 1106
Score = 268 (99.4 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
Identities = 103/292 (35%), Positives = 138/292 (47%)
Query: 508 ELSSSDEKKYKALKRATEREISQSA--DVICCTCVGAGDPRLANFR---FRQVLIDESTQ 562
E S S+E + A RA E +I ++ ++ TC AG R F V +DE+ Q
Sbjct: 762 EESMSEELRQYA--RAGE-DIRHASFHRIVVSTCSSAGMFYQIGLRVGHFTHVFVDEAGQ 818
Query: 563 ATEPECLIPLVLGAK---QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV---LL--- 613
ATEPE LIPL L ++ Q+VL GD QLGPV+ + A+ GL SL ERL+ L
Sbjct: 819 ATEPETLIPLSLLSETSGQIVLAGDPKQLGPVVKSRLASVFGLGVSLLERLMGNSLYACG 878
Query: 614 --GLKPI---RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF--PW-PVPN 665
G P+ +L YR H +L + PS FY G L Q + +D W +P
Sbjct: 879 ERGFNPLLVTKLLYNYRSHEALLDLPSRLFYAGEL-----CVRAQRAAVDSLCHWNKLPT 933
Query: 666 R--PMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTF---LRSGVVPSQIGVITPYEG 720
R P+ F+ G E S+ N EA V L + + + IGVI PY
Sbjct: 934 RGFPLIFHGVRGSEMREGCNPSWFNPAEAVQVMMYCCQLAKRLYNPISAADIGVIAPYRK 993
Query: 721 QRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRN 772
Q I + R G E++V SV+ FQG+E +ILS VRSNE N
Sbjct: 994 QVEKIRVLLQRVGL------GEVKVGSVEEFQGQEFLIMILSTVRSNESLLN 1039
Score = 122 (48.0 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
Identities = 34/86 (39%), Positives = 48/86 (55%)
Query: 381 RRFGAPGL---PELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVTSA-AIVYHMAKQ 432
+R PG P+LNA+Q AV+ +L RP + GPPGTGKT+T AI+ +
Sbjct: 660 KRIPNPGQFFNPDLNAAQKQAVRRILSGESRPTPYVLFGPPGTGKTITLIEAILQVHHRI 719
Query: 433 GQGQVLVCAPSNVAVDQLAEKISATG 458
+VLVC PSN A D + ++ +G
Sbjct: 720 SCSRVLVCTPSNSAADLICMRLHHSG 745
Score = 40 (19.1 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 372 VQMVRNTLPRRFGAPGLPELNASQVFAVKSVL 403
+++ R LP G G+P+ V A K VL
Sbjct: 426 LRLTRRHLPNFLGNYGVPQALRECVEAQKDVL 457
Score = 38 (18.4 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 386 PGLPELNASQVFAVKSVLQRPIS 408
PGL E S K VL++P S
Sbjct: 513 PGLAEGRPSLFIGDKVVLKKPCS 535
>CGD|CAL0006154 [details] [associations]
symbol:orf19.6199 species:5476 "Candida albicans" [GO:0043141
"ATP-dependent 5'-3' DNA helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0033203 "DNA helicase
A complex" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR004483 SMART:SM00382
CGD:CAL0006154 GO:GO:0005524 GO:GO:0003677 GO:GO:0017111
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000038
EMBL:AACQ01000037 TIGRFAMs:TIGR00376 RefSeq:XP_718706.1
RefSeq:XP_718790.1 ProteinModelPortal:Q5AAW1 STRING:Q5AAW1
GeneID:3639532 GeneID:3639630 KEGG:cal:CaO19.13579
KEGG:cal:CaO19.6199 Uniprot:Q5AAW1
Length = 719
Score = 210 (79.0 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 67/183 (36%), Positives = 97/183 (53%)
Query: 602 LAQSLFERLV--LLGLKPIRL-QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID 658
LA +LF+RL+ G K +L VQYRM+ S+ +FPS Y+ L+ ++ R+ S +D
Sbjct: 467 LATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQLKCDDSV--REISLVD 524
Query: 659 FPWPVPN-----RPMFFYVQMGQ--EEISAS--GTSYLNRTEAANVEKIVTTFLRSGVVP 709
P N + +++ Q G+ E+IS S G S N E V+ + L SGV P
Sbjct: 525 LPGVEINDDTMTKCIWYDTQGGEFPEQISESIDGDSKYNDMELLVVKGHIKKLLSSGVQP 584
Query: 710 SQIGVITPYEGQRAYIVNYMSRNGALRQQLYKE----IEVASVDSFQGREKDYIILSCVR 765
IGVI PY Q + M G + + IE+++VD FQGREK+ IIL+ VR
Sbjct: 585 QDIGVIAPYSAQVQNLKKQMGLGGEVGSSANGDKDGQIEISTVDGFQGREKEVIILTLVR 644
Query: 766 SNE 768
SN+
Sbjct: 645 SND 647
Score = 173 (66.0 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 67/231 (29%), Positives = 112/231 (48%)
Query: 337 STSFDRMQGAM-KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL--PELNA 393
S ++ RM M K A+ E+ + I+ LLG + T G +LNA
Sbjct: 166 SITYKRMITTMDKVLAMKESDKND-IHKILLGESQYIPKSNGTSNNNNGEINFFNDKLNA 224
Query: 394 SQVFAVK-SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE 452
SQ A+ ++ I++I GPPGTGKT T ++ + +G+ +VLVC PSN++VD + E
Sbjct: 225 SQRQAIDFAINDSNITIIHGPPGTGKTYTLIELIQQLTSKGE-KVLVCGPSNISVDTILE 283
Query: 453 KISAT--GLKVVRLCAKSR---EAVSSPVEHLTLHYQ---VRHLDTSEKSELHKLQQLKD 504
++ +K++R+ +R + + +E L+ Y + + +S L K+++ K
Sbjct: 284 RLGDKYEPMKLIRIGHPARLLMKNLQHSLEILSKTYGRDIINEILNDIQSVLTKIKKCK- 342
Query: 505 EQGELSS--SDEKKYKALKRATEREISQS----ADVICCTCVGAGDPRLAN 549
+ GE + S+ K K R ER+I A V+ T G+G L N
Sbjct: 343 KYGERKALYSELKLLKKELRQRERKIVNELLVQAQVVVATLHGSGSYELKN 393
Score = 171 (65.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 65/198 (32%), Positives = 101/198 (51%)
Query: 493 KSELHKLQQLKDEQGELSS--SDEKKYKALKRATEREISQS----ADVICCTCVGAGDPR 546
+S L K+++ K + GE + S+ K K R ER+I A V+ T G+G
Sbjct: 332 QSVLTKIKKCK-KYGERKALYSELKLLKKELRQRERKIVNELLVQAQVVVATLHGSGSYE 390
Query: 547 LAN---------FRFRQVLIDESTQATEPECLIPLVLGA--KQVVLVGDHCQLGPVIMCK 595
L N F ++IDE +Q+ EP+C IPL+L K++V+ GD+ QL P I +
Sbjct: 391 LKNSVGTNNNEGIVFDTIIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPTIKTQ 450
Query: 596 KAARAG----------LAQSLFERLV--LLGLKPIRL-QVQYRMHPSLSEFPSNSFYEGT 642
K+ + LA +LF+RL+ G K +L VQYRM+ S+ +FPS Y+
Sbjct: 451 KSNSSSPSSSSSSASILATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQ 510
Query: 643 LQNGVTINERQSSGIDFP 660
L+ ++ R+ S +D P
Sbjct: 511 LKCDDSV--REISLVDLP 526
>UNIPROTKB|Q5AAW1 [details] [associations]
symbol:HCS1 "Putative uncharacterized protein HCS1"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR004483 SMART:SM00382 CGD:CAL0006154 GO:GO:0005524
GO:GO:0003677 GO:GO:0017111 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AACQ01000038 EMBL:AACQ01000037
TIGRFAMs:TIGR00376 RefSeq:XP_718706.1 RefSeq:XP_718790.1
ProteinModelPortal:Q5AAW1 STRING:Q5AAW1 GeneID:3639532
GeneID:3639630 KEGG:cal:CaO19.13579 KEGG:cal:CaO19.6199
Uniprot:Q5AAW1
Length = 719
Score = 210 (79.0 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 67/183 (36%), Positives = 97/183 (53%)
Query: 602 LAQSLFERLV--LLGLKPIRL-QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID 658
LA +LF+RL+ G K +L VQYRM+ S+ +FPS Y+ L+ ++ R+ S +D
Sbjct: 467 LATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQLKCDDSV--REISLVD 524
Query: 659 FPWPVPN-----RPMFFYVQMGQ--EEISAS--GTSYLNRTEAANVEKIVTTFLRSGVVP 709
P N + +++ Q G+ E+IS S G S N E V+ + L SGV P
Sbjct: 525 LPGVEINDDTMTKCIWYDTQGGEFPEQISESIDGDSKYNDMELLVVKGHIKKLLSSGVQP 584
Query: 710 SQIGVITPYEGQRAYIVNYMSRNGALRQQLYKE----IEVASVDSFQGREKDYIILSCVR 765
IGVI PY Q + M G + + IE+++VD FQGREK+ IIL+ VR
Sbjct: 585 QDIGVIAPYSAQVQNLKKQMGLGGEVGSSANGDKDGQIEISTVDGFQGREKEVIILTLVR 644
Query: 766 SNE 768
SN+
Sbjct: 645 SND 647
Score = 173 (66.0 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 67/231 (29%), Positives = 112/231 (48%)
Query: 337 STSFDRMQGAM-KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL--PELNA 393
S ++ RM M K A+ E+ + I+ LLG + T G +LNA
Sbjct: 166 SITYKRMITTMDKVLAMKESDKND-IHKILLGESQYIPKSNGTSNNNNGEINFFNDKLNA 224
Query: 394 SQVFAVK-SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE 452
SQ A+ ++ I++I GPPGTGKT T ++ + +G+ +VLVC PSN++VD + E
Sbjct: 225 SQRQAIDFAINDSNITIIHGPPGTGKTYTLIELIQQLTSKGE-KVLVCGPSNISVDTILE 283
Query: 453 KISAT--GLKVVRLCAKSR---EAVSSPVEHLTLHYQ---VRHLDTSEKSELHKLQQLKD 504
++ +K++R+ +R + + +E L+ Y + + +S L K+++ K
Sbjct: 284 RLGDKYEPMKLIRIGHPARLLMKNLQHSLEILSKTYGRDIINEILNDIQSVLTKIKKCK- 342
Query: 505 EQGELSS--SDEKKYKALKRATEREISQS----ADVICCTCVGAGDPRLAN 549
+ GE + S+ K K R ER+I A V+ T G+G L N
Sbjct: 343 KYGERKALYSELKLLKKELRQRERKIVNELLVQAQVVVATLHGSGSYELKN 393
Score = 171 (65.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 65/198 (32%), Positives = 101/198 (51%)
Query: 493 KSELHKLQQLKDEQGELSS--SDEKKYKALKRATEREISQS----ADVICCTCVGAGDPR 546
+S L K+++ K + GE + S+ K K R ER+I A V+ T G+G
Sbjct: 332 QSVLTKIKKCK-KYGERKALYSELKLLKKELRQRERKIVNELLVQAQVVVATLHGSGSYE 390
Query: 547 LAN---------FRFRQVLIDESTQATEPECLIPLVLGA--KQVVLVGDHCQLGPVIMCK 595
L N F ++IDE +Q+ EP+C IPL+L K++V+ GD+ QL P I +
Sbjct: 391 LKNSVGTNNNEGIVFDTIIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPTIKTQ 450
Query: 596 KAARAG----------LAQSLFERLV--LLGLKPIRL-QVQYRMHPSLSEFPSNSFYEGT 642
K+ + LA +LF+RL+ G K +L VQYRM+ S+ +FPS Y+
Sbjct: 451 KSNSSSPSSSSSSASILATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQ 510
Query: 643 LQNGVTINERQSSGIDFP 660
L+ ++ R+ S +D P
Sbjct: 511 LKCDDSV--REISLVDLP 526
>DICTYBASE|DDB_G0271732 [details] [associations]
symbol:DDB_G0271732 "AN1-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0032508 "DNA duplex unwinding"
evidence=ISS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51061
SMART:SM00382 dictyBase:DDB_G0271732 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000006 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10
OMA:HARQRIS RefSeq:XP_645520.1 ProteinModelPortal:Q75JA0
PRIDE:Q75JA0 EnsemblProtists:DDB0232283 GeneID:8618149
KEGG:ddi:DDB_G0271732 InParanoid:Q75JA0 ProtClustDB:CLSZ2846906
Uniprot:Q75JA0
Length = 1024
Score = 331 (121.6 bits), Expect = 3.1e-26, P = 3.1e-26
Identities = 98/290 (33%), Positives = 147/290 (50%)
Query: 491 SEKSELHKLQQLKDEQGELSSSDEKKY--KALKRATEREISQSADVICCTCVGAGDPRLA 548
S +L K++Q + + SS E + K +++ +++ ++VI T GA D L
Sbjct: 354 SLSKQLLKVKQHSERRVIQSSIKELRIDLKNREKSLIQQVINDSNVILSTNTGASDSSLK 413
Query: 549 NF-RFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLF 607
F V+IDE QA E C IP+ G K ++L GDH QL P I +AA+ GL+ +LF
Sbjct: 414 GIDNFDWVVIDECAQALEASCWIPIQKGNK-LLLAGDHQQLPPTIHSMEAAKMGLSITLF 472
Query: 608 ERLVL-LGLKPIRL-QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
ER++ G + RL VQYRM+ + ++ S FY + +++ D P + N
Sbjct: 473 ERIIKQYGDQVSRLLNVQYRMNHKIMDWSSMEFYNSKMIADKSVSNHLLVTGDSP-KIRN 531
Query: 666 R-----PMFFYVQMG---QEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITP 717
P+ G +E G S N E V++ + + GV P+ IGVITP
Sbjct: 532 TLTTTCPLLMIDTSGCDMEESQDDEGESKFNNGEVIVVKRHIEKLIECGVKPNDIGVITP 591
Query: 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
Y GQ + +Y+S+ Y +E+ +VD FQGREKD II+S VRSN
Sbjct: 592 YNGQVKLLKSYLSKK-------YSSMEIGTVDGFQGREKDVIIISMVRSN 634
Score = 145 (56.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 48/152 (31%), Positives = 81/152 (53%)
Query: 391 LNASQVFAVK-SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
LN SQ A+ S+ ++ I GPPGTGKT T + + K G+ +VL C PSN++VD
Sbjct: 235 LNQSQKEAILFSLSSNDVACIHGPPGTGKTTTVVEFIVQLIKSGK-KVLACGPSNLSVDN 293
Query: 450 LAEKI-------SATG--LKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQ 500
+ EK+ S G + R+ +R + ++H TL ++ ++ SE ++ ++
Sbjct: 294 MLEKLLEYSNSSSCNGFLINATRIGHPTR-ILPQLLKH-TLDHKTKN---SEGGQI--IK 346
Query: 501 QLKDEQGELSSSDEKKYKALKRATEREISQSA 532
+KDE LS K+ +K+ +ER + QS+
Sbjct: 347 GIKDEIKSLS----KQLLKVKQHSERRVIQSS 374
>UNIPROTKB|D4AEB3 [details] [associations]
symbol:Setx "Protein Setx" species:10116 "Rattus
norvegicus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 RGD:1565575 GO:GO:0005737
GO:GO:0005654 GO:GO:0006302 KO:K10706 GeneTree:ENSGT00580000081652
CTD:23064 OMA:RLINHFE OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15
IPI:IPI00476851 RefSeq:XP_342401.3 ProteinModelPortal:D4AEB3
PRIDE:D4AEB3 Ensembl:ENSRNOT00000017984 GeneID:362096
KEGG:rno:362096 NextBio:678646 ArrayExpress:D4AEB3 Uniprot:D4AEB3
Length = 2647
Score = 287 (106.1 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 103/307 (33%), Positives = 151/307 (49%)
Query: 486 RHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP 545
R + E E H + K+ Q EL+S ++ +RA I +S VICCT +G
Sbjct: 2082 REMQRQELDE-HIVIVSKERQ-ELASKIKEVQGRPQRAQNTIILES-HVICCTLSTSGGL 2138
Query: 546 RLAN-FR------FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAA 598
L + FR F V++DE+ Q+ E E L PL+ ++VLVGD QL P ++ KA
Sbjct: 2139 LLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLVLVGDPKQLPPTVISMKAQ 2198
Query: 599 RAGLAQSLFERLV----------LLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQ-NG 646
G QS+ R ++G P+ +L +QYRMHP + FPSN Y L+ N
Sbjct: 2199 EYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNR 2258
Query: 647 VTINERQSSGIDFPWPVPNRP-MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-- 703
+T R SS WP +P + F V G E+ SY+N E V +I+
Sbjct: 2259 LTETIRCSS----EWPF--QPYLVFDVGDGSEQ--RDNDSYINVQEIKLVMEIIKLIKEK 2310
Query: 704 RSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSC 763
R + IG+IT Y+ Q+ I + + + EV +VD+FQGR+KD II++C
Sbjct: 2311 RKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPA----EVDTVDAFQGRQKDCIIVTC 2366
Query: 764 VRSNEHQ 770
VR++ Q
Sbjct: 2367 VRASAVQ 2373
Score = 111 (44.1 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLA 451
I LI GPPGTGK+ T ++Y + AK Q +VLVCAPSN AVD+L
Sbjct: 1935 ICLIHGPPGTGKSKTIVGLLYRLLTESQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELM 1994
Query: 452 EKI 454
+KI
Sbjct: 1995 KKI 1997
Score = 45 (20.9 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 232 LCREPCLNMMKESQSKDNVTIRWDIG 257
+C + C NM +E ++ NV ++ DIG
Sbjct: 374 ICPDYCPNMYEEMETLANV-LQSDIG 398
Score = 45 (20.9 bits), Expect = 8.5e-20, Sum P(2) = 8.5e-20
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 174 NTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + ++ ++ + KE C K +PLG NCG N+ LG
Sbjct: 1987 NAAVDELMKKII-LEFKEKCKDKKNPLG-------NCGDINLVRLG 2024
Score = 38 (18.4 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 195 HKDSPLGETILECYNCGCR 213
H D+ G+T CY CR
Sbjct: 1235 HPDTRRGQTKSSCY-ISCR 1252
>UNIPROTKB|Q4S102 [details] [associations]
symbol:GSTENG00025786001 "Chromosome 5 SCAF14773, whole
genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0006284 "base-excision repair" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=ISS] [GO:0045740 "positive regulation of DNA replication"
evidence=ISS] [GO:0005760 "gamma DNA polymerase complex"
evidence=ISS] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0006284 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0017108 GO:GO:0043137 GO:GO:0043142 GO:GO:0006264
PANTHER:PTHR10887:SF14 HOVERGEN:HBG081456 EMBL:CAAE01014773
ProteinModelPortal:Q4S102 STRING:Q4S102 Uniprot:Q4S102
Length = 1043
Score = 296 (109.3 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
Identities = 86/280 (30%), Positives = 141/280 (50%)
Query: 511 SSDEKKYKALKRATEREISQSAD-VICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL 569
+ + + K + +E E + + V+ TC+G P RF ++DE++Q ++P C+
Sbjct: 720 TEESARKKGVHTLSELEQLYNKELVVGTTCLGIRHPLFTRRRFDFCIVDEASQISQPVCV 779
Query: 570 IPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPS 629
PL A++ VLVGDH QL P++ ++A G+ +SLF+RL L ++L VQYRM+
Sbjct: 780 GPLFY-ARRFVLVGDHQQLPPIVQNQEARSLGMDESLFKRLELHRDAVVQLNVQYRMNRQ 838
Query: 630 LSEFPSNSFYEGTLQNGVTINERQSSG-IDFP-------------WP----VPNRPMFFY 671
+ ++ YEG L+ G +ER ++ I P W +P+ P+ F
Sbjct: 839 IMSLSNSLMYEGRLECG---SERTATSLITLPLLPSVLPELGSLAWIQATLLPSNPVCFL 895
Query: 672 VQMGQEEISASGTSYL-NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMS 730
+ + N TEAA + K++ +++G P IGVI PY Q I
Sbjct: 896 DCSAVPALETVEQGGISNHTEAALIHKLLLLLIKAGCKPGDIGVIAPYRQQLRTI----- 950
Query: 731 RNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770
+G L+ + +EV +VD +QGR+K I+LS VRS +
Sbjct: 951 -SGLLQASAFTGVEVNTVDRYQGRDKSLILLSFVRSTAEE 989
Score = 84 (34.6 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ AVD
Sbjct: 633 LNKPQKQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILHACGFS-VLLTSYTHSAVDN 691
Query: 450 LAEKISATGLKVVRL 464
+ K+ + +RL
Sbjct: 692 ILLKLKRFRVGFLRL 706
>UNIPROTKB|Q7Z333 [details] [associations]
symbol:SETX "Probable helicase senataxin" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0007623 "circadian
rhythm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IC] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR026121 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008219 GO:GO:0006396 GO:GO:0006302 Orphanet:803
eggNOG:COG1112 GO:GO:0003678 KO:K10706 EMBL:AL159997 Orphanet:64753
EMBL:AY362728 EMBL:BX537849 EMBL:BX538166 EMBL:CR749249
EMBL:AL353701 EMBL:BC032600 EMBL:BC032622 EMBL:BC078166
EMBL:BC106017 EMBL:BC137350 EMBL:AB014525 EMBL:AK001456
EMBL:AK022902 IPI:IPI00142538 IPI:IPI00646645 IPI:IPI00719643
RefSeq:NP_055861.3 UniGene:Hs.460317 ProteinModelPortal:Q7Z333
SMR:Q7Z333 IntAct:Q7Z333 STRING:Q7Z333 PhosphoSite:Q7Z333
DMDM:296453021 PaxDb:Q7Z333 PRIDE:Q7Z333 Ensembl:ENST00000224140
Ensembl:ENST00000372169 Ensembl:ENST00000393220
Ensembl:ENST00000436441 GeneID:23064 KEGG:hsa:23064 UCSC:uc004cbj.3
UCSC:uc004cbk.3 UCSC:uc010mzt.3 CTD:23064 GeneCards:GC09M135136
HGNC:HGNC:445 HPA:HPA024105 MIM:602433 MIM:606002 MIM:608465
neXtProt:NX_Q7Z333 PharmGKB:PA24751 HOVERGEN:HBG108476
InParanoid:Q7Z333 OMA:RLINHFE OrthoDB:EOG4XWFWX PhylomeDB:Q7Z333
ChiTaRS:SETX GenomeRNAi:23064 NextBio:44145 ArrayExpress:Q7Z333
Bgee:Q7Z333 Genevestigator:Q7Z333 GermOnline:ENSG00000107290
PANTHER:PTHR10887:SF15 Uniprot:Q7Z333
Length = 2677
Score = 288 (106.4 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 97/301 (32%), Positives = 151/301 (50%)
Query: 492 EKSELHK-LQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN- 549
++ EL + + ++ E+ EL+S K+ + + T+ I + +ICCT +G L +
Sbjct: 2108 QRQELDENISKVSKERQELASKI-KEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESA 2166
Query: 550 FR------FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLA 603
FR F V++DE+ Q+ E E L PL+ +++LVGD QL P ++ KA G
Sbjct: 2167 FRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYD 2226
Query: 604 QSL---FERLV-------LLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINER 652
QS+ F RL+ ++ PI +L VQYRMHP + FPSN Y L+ T +
Sbjct: 2227 QSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLK---TNRQT 2283
Query: 653 QSSGIDFPWPVPNRP-MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL--RSGVVP 709
++ WP +P + F V G E SY+N E V +I+ R V
Sbjct: 2284 EAIRCSSDWPF--QPYLVFDVGDGSER--RDNDSYINVQEIKLVMEIIKLIKDKRKDVSF 2339
Query: 710 SQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH 769
IG+IT Y+ Q+ I + + + EV +VD+FQGR+KD +I++CVR+N
Sbjct: 2340 RNIGIITHYKAQKTMIQKDLDKEFDRKGPA----EVDTVDAFQGRQKDCVIVTCVRANSI 2395
Query: 770 Q 770
Q
Sbjct: 2396 Q 2396
Score = 111 (44.1 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLA 451
I LI GPPGTGK+ T ++Y + AK Q +VLVCAPSN AVD+L
Sbjct: 1958 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELM 2017
Query: 452 EKI 454
+KI
Sbjct: 2018 KKI 2020
Score = 45 (20.9 bits), Expect = 6.7e-19, Sum P(3) = 6.7e-19
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 174 NTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + ++ ++ + KE C K +PLG NCG N+ LG
Sbjct: 2010 NAAVDELMKKII-LEFKEKCKDKKNPLG-------NCGDINLVRLG 2047
Score = 40 (19.1 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 95 TSSPSKRGANNSSN 108
T S +K+G N SSN
Sbjct: 1245 THSDAKKGQNRSSN 1258
Score = 37 (18.1 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 2 DSQQTNLFETASQPD 16
D+++ NLF T + P+
Sbjct: 1490 DAEEDNLFLTQNDPE 1504
>MGI|MGI:2443480 [details] [associations]
symbol:Setx "senataxin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR026121 MGI:MGI:2443480 GO:GO:0005524 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0007623 GO:GO:0006302
GO:GO:0004386 eggNOG:COG1112 GO:GO:0006369 KO:K10706 EMBL:AL772379
GeneTree:ENSGT00580000081652 CTD:23064 HOVERGEN:HBG108476
OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15 EMBL:AL845267
EMBL:AK044730 EMBL:AK048354 EMBL:AK077911 EMBL:BC046382
EMBL:BC058109 EMBL:BC079604 EMBL:AK129177 EMBL:BK001523
IPI:IPI00421108 IPI:IPI00626271 RefSeq:NP_932150.2 UniGene:Mm.41867
ProteinModelPortal:A2AKX3 SMR:A2AKX3 DIP:DIP-56995N IntAct:A2AKX3
STRING:A2AKX3 PhosphoSite:A2AKX3 PaxDb:A2AKX3 PRIDE:A2AKX3
Ensembl:ENSMUST00000061578 Ensembl:ENSMUST00000129544 GeneID:269254
KEGG:mmu:269254 UCSC:uc008izm.1 InParanoid:A2AKX3 NextBio:392760
Bgee:A2AKX3 CleanEx:MM_SETX Genevestigator:A2AKX3 Uniprot:A2AKX3
Length = 2646
Score = 284 (105.0 bits), Expect = 3.2e-25, Sum P(4) = 3.2e-25
Identities = 99/302 (32%), Positives = 151/302 (50%)
Query: 492 EKSELHK-LQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN- 549
++ EL + + + E+ EL+S ++ +RA I +S VICCT +G L +
Sbjct: 2084 QRQELDEHIAIVSKERQELASKIKEVQGRPQRAQNTIILES-HVICCTLSTSGGLLLESA 2142
Query: 550 FR------FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLA 603
FR F V++DE+ Q+ E E L PL+ +++LVGD QL P ++ KA G
Sbjct: 2143 FRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYD 2202
Query: 604 QSLFERLV----------LLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQ-NGVTINE 651
QS+ R ++G P+ +L +QYRMHP + FPSN Y L+ N +T +
Sbjct: 2203 QSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESI 2262
Query: 652 RQSSGIDFPWPVPNRP-MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL--RSGVV 708
R SS WP +P + F V G E SY+N E V +I+ R +
Sbjct: 2263 RCSS----EWPF--QPYLVFDVGDGSER--RDNDSYINVQEIKLVMEIIKLIKEKRKDIS 2314
Query: 709 PSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
IG+IT Y+ Q+ I + + + EV +VD+FQGR+KD II++CVR++
Sbjct: 2315 FRNIGIITHYKAQKTMIQKDLEKEFDKKGPA----EVDTVDAFQGRQKDCIIVTCVRASA 2370
Query: 769 HQ 770
Q
Sbjct: 2371 VQ 2372
Score = 111 (44.1 bits), Expect = 3.2e-25, Sum P(4) = 3.2e-25
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLA 451
I LI GPPGTGK+ T ++Y + AK Q +VLVCAPSN AVD+L
Sbjct: 1934 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELM 1993
Query: 452 EKI 454
+KI
Sbjct: 1994 KKI 1996
Score = 45 (20.9 bits), Expect = 3.2e-25, Sum P(4) = 3.2e-25
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 232 LCREPCLNMMKESQSKDNVTIRWDIG 257
+C + C NM +E ++ NV ++ DIG
Sbjct: 374 ICPDYCPNMYEEMETLANV-LQSDIG 398
Score = 45 (20.9 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 174 NTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + ++ ++ + KE C K +PLG NCG N+ LG
Sbjct: 1986 NAAVDELMKKII-LEFKEKCKDKKNPLG-------NCGDINLVRLG 2023
Score = 42 (19.8 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 491 SEKSELHKLQQLKDEQGELSSSDEK 515
S+ S L K +++K E+ + SSSD++
Sbjct: 852 SQNSSLFK-KEIKSEELDNSSSDDE 875
Score = 41 (19.5 bits), Expect = 3.2e-25, Sum P(4) = 3.2e-25
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 254 WD--IGLNKKRVAYFVFPKEDNELRLVPGDELRLRYS-GDAAH 293
W+ I LN+ +A + PKE++ + L P R+ D +H
Sbjct: 1769 WEFLIYLNESELAKQLHPKENDLVFLAPEKSYMDRHGMQDCSH 1811
Score = 38 (18.4 bits), Expect = 8.3e-18, Sum P(4) = 8.3e-18
Identities = 12/57 (21%), Positives = 30/57 (52%)
Query: 454 ISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELS 510
+ +G LC ++++ + + V++LT + L T+++ +L K L + +L+
Sbjct: 1825 VMRSGKAECSLCIQTQDTLPASVKNLTRCIVISSLVTTQR-KL-KAMSLLSSRNQLA 1879
>ZFIN|ZDB-GENE-091230-8 [details] [associations]
symbol:mov10a "Moloney leukemia virus 10, homolog, a"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 ZFIN:ZDB-GENE-091230-8
GO:GO:0005524 GO:GO:0017111 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 EMBL:CU469362
IPI:IPI00481619 RefSeq:XP_002662576.2 UniGene:Dr.155704
Ensembl:ENSDART00000064826 GeneID:566858 KEGG:dre:566858 CTD:566858
NextBio:20888414 Bgee:E7FAV9 Uniprot:E7FAV9
Length = 1001
Score = 225 (84.3 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 74/215 (34%), Positives = 111/215 (51%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV---LLGLKP------------IRLQV 622
Q+VL GD QLGPV+ A GL QSL ERL+ L K +L
Sbjct: 687 QLVLAGDPQQLGPVLRSPLAQLHGLGQSLLERLMKRNALYQKSQDDNSKYDSRFVTKLLR 746
Query: 623 QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR--PMFFYVQMGQEEI 679
YR HP++ + P+ FYE LQ V N+ + W +P + P+ F+ MG++E
Sbjct: 747 NYRSHPAILKIPNELFYENELQ--VFANQMEREAF-CQWEHLPRKGFPVVFHGVMGKDER 803
Query: 680 SASGTSYLNRTEA---AN-VEKIVTTFLRSGVV---PSQIGVITPYEGQRAYIVNYMSRN 732
A+ S+ N TE N + ++ T + G+ P+ IG+I PY Q I ++
Sbjct: 804 EANSPSFFNVTEIEVIVNYLNNLMQTQGKKGLPKLGPNDIGIIAPYRKQVEKIRKALNTV 863
Query: 733 GALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
G L++ +K+I+V SV+ FQG+E+ II+S VRS+
Sbjct: 864 GELKK--WKDIKVGSVEEFQGQERKVIIVSTVRSS 896
Score = 150 (57.9 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 68/231 (29%), Positives = 103/231 (44%)
Query: 259 NKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRAS 318
NKK + V +N ++ GD+L + S D P G+V ++ ++V L
Sbjct: 393 NKKLLILKVPGVAENRPSVLRGDKLNVCLSDDRNQPITVYEGYVHRVEL-DKVILGFSRK 451
Query: 319 QGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNT 378
N F V+F + +R ++ AV E +V + + L + + +
Sbjct: 452 LLQKFVNNMKFDVEF-----NINRFPLRLQHRAV-ELAVQHALGNVLFPSDKDTG--HSE 503
Query: 379 LPRRFGAPGLPELNASQVFAVKSVLQ---RPIS-LIQGPPGTGKTVTSAAIVYHMAK-QG 433
LP E N Q AV+ +L RP LI GPPGTGKTVT + + K +
Sbjct: 504 LPHLSMFNKDLENNPEQKAAVQHILSGSSRPAPYLIFGPPGTGKTVTVVEAIKQVDKSKA 563
Query: 434 QGQVLVCAPSNVAVDQLAEKI--SATGLKVVRLCAKSREAVSSPVEHLTLH 482
Q +L CAPSN A D L E++ ++ RLCA SR+ + P + L H
Sbjct: 564 QSHILACAPSNSACDLLCERLLGHVDAHRIYRLCAPSRDPRTVP-QKLLKH 613
Score = 127 (49.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 37/85 (43%), Positives = 47/85 (55%)
Query: 534 VICCTCVGAG---DPRLANFRFRQVLIDESTQATEPECLIPL--VLGAK--QVVLVGDHC 586
+I T V AG +A F + IDE+ QA EPEC+I + +L Q+VL GD
Sbjct: 636 IIVVTLVTAGRLVSGGVAMGHFTHIFIDEAGQAVEPECIIGIAGLLDPLKGQLVLAGDPQ 695
Query: 587 QLGPVIMCKKAARAGLAQSLFERLV 611
QLGPV+ A GL QSL ERL+
Sbjct: 696 QLGPVLRSPLAQLHGLGQSLLERLM 720
Score = 38 (18.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 487 HLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADV 534
HL S K L ++++L D Q + + E+ + L EI D+
Sbjct: 333 HLPASLKQHLPRVRRLLDTQLCMKNYSERFHLLLHL---EEIQMEVDI 377
>UNIPROTKB|F1PYQ4 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 EMBL:AAEX03002775 EMBL:AAEX03002776
EMBL:AAEX03002777 Ensembl:ENSCAFT00000036654 Uniprot:F1PYQ4
Length = 997
Score = 283 (104.7 bits), Expect = 9.2e-25, Sum P(3) = 9.2e-25
Identities = 90/310 (29%), Positives = 162/310 (52%)
Query: 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGELSSSDEKKYKAL 520
V L + + AV + + L +++ L ++H+ +Q+ +E E+ S K K+L
Sbjct: 644 VLLTSYTHSAVDNILLKLA-KFKIGFLRLGRTQKVHQDIQKFTEE--EICRS--KPIKSL 698
Query: 521 KRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVV 580
A E+ S ++ TC+G P + F ++DE++Q ++P CL PL +++ V
Sbjct: 699 --ALLEELYNSHRIVATTCMGINHPIFSRKTFDFCIVDEASQISQPICLGPLFF-SQRFV 755
Query: 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYE 640
LVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+ + + Y+
Sbjct: 756 LVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYD 815
Query: 641 GTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEIS--ASGTSYLNRTEAANVEKI 698
G L+ G +++ ++ V N P V++ E + + + E N
Sbjct: 816 GKLECG---SDKVANA------VVNLPNLKDVKLELEFYADYSENPWMIGAFEPNNPVCF 866
Query: 699 VTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDY 758
+ T ++G PS IG+I PY Q+ I+N + + ++R +EV +VD +QGR+K
Sbjct: 867 LNTD-KAGCKPSDIGIIAPYR-QQLKIINDLLFHSSIRM-----VEVNTVDKYQGRDKSI 919
Query: 759 IILSCVRSNE 768
I++S VRSN+
Sbjct: 920 ILVSFVRSNK 929
Score = 86 (35.3 bits), Expect = 9.2e-25, Sum P(3) = 9.2e-25
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 595 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYTCGFS-VLLTSYTHSA 653
Query: 447 VDQLAEKISATGLKVVRL 464
VD + K++ + +RL
Sbjct: 654 VDNILLKLAKFKIGFLRL 671
Score = 45 (20.9 bits), Expect = 9.2e-25, Sum P(3) = 9.2e-25
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 417 CLMLTLESQSKDN 429
>FB|FBgn0034187 [details] [associations]
symbol:CG6967 species:7227 "Drosophila melanogaster"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] UCSC:CG6967-RC
FlyBase:FBgn0034187 NextBio:801049 EMBL:AY119610
ProteinModelPortal:Q8MRI1 PRIDE:Q8MRI1 InParanoid:Q8MRI1
PhylomeDB:Q8MRI1 ArrayExpress:Q8MRI1 Bgee:Q8MRI1 Uniprot:Q8MRI1
Length = 825
Score = 315 (115.9 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 119/404 (29%), Positives = 182/404 (45%)
Query: 392 NASQVFAVKSVLQRPIS----LIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSNVA 446
NA Q+ AV+ ++ P + ++ GPPGTGKT T AI+ +Q Q ++LV A SN A
Sbjct: 312 NAEQLEAVQRIVAGPSTQGPYILFGPPGTGKTTTIVEAILQLRLQQPQSRILVTAGSNSA 371
Query: 447 VDQLAEKISATGLKVVRLCAK-SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDE 505
D +A K+ +RL +++ + P +H + R + + + L LK+
Sbjct: 372 CDTIALKLCEYIESNIRLQEHFAQQKLPEP-DHQLIRVYSRSIYEKGFASVPSLL-LKN- 428
Query: 506 QGELSSSDEKKYKALKRATEREISQSADVIC-CTCVGAGDPRLANFRF-RQVLIDESTQA 563
S+ + Y +K + R + V CT L + F + IDE+ +
Sbjct: 429 ----SNCSKSIYDHIKAS--RIVKYGIIVATLCTVARLVTDTLGRYNFFTHIFIDEAGAS 482
Query: 564 TEPECLIPLVLGAKQ-----VVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGL--- 615
TEPE LI ++G KQ V+L GDH QLG VI +AA GL++SL ERL+
Sbjct: 483 TEPEALIG-IMGIKQTADCHVILSGDHKQLGAVIKSNRAASLGLSRSLMERLLQSDCYKS 541
Query: 616 ---------KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPV--- 663
+ +RL YR HP + + +Y G L+ + + W V
Sbjct: 542 DENGNYDRNRQMRLCRNYRSHPQIVRLFNELYYNGELKAQAPAMDVNLAA---NWSVLTN 598
Query: 664 PNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQ-IGVITPYEGQR 722
P P+ F G + TS N EA + V + VV + +G++ PY Q
Sbjct: 599 PQFPIIFQATHGVTNREQNSTSSYNNLEAEVICWYVKRLINDRVVGQEDVGIVAPYTAQG 658
Query: 723 AYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ + G Y +EV SV+++QGREK II S V+S
Sbjct: 659 KLVTKLLQSKG------YPNVEVGSVETYQGREKTIIIASLVKS 696
>UNIPROTKB|G4MK85 [details] [associations]
symbol:MGG_02491 "DNA replication ATP-dependent helicase
dna2" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0004386 EMBL:CM001231 GO:GO:0017108 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742 InterPro:IPR022765
Pfam:PF01930 RefSeq:XP_003709288.1 ProteinModelPortal:G4MK85
EnsemblFungi:MGG_02491T0 GeneID:2681588 KEGG:mgr:MGG_02491
Uniprot:G4MK85
Length = 1689
Score = 177 (67.4 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 46/132 (34%), Positives = 70/132 (53%)
Query: 534 VICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIM 593
V+ TC+G P F ++DE++Q T P CL P+ + A+ VLVGDH QL P++
Sbjct: 1259 VVATTCLGISHPLFNERTFDYCIVDEASQITLPICLGPIRM-ARTFVLVGDHNQLPPLVQ 1317
Query: 594 CKKAARAGLAQSLFERLVLLGLKP---IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTIN 650
++A + GL SLF+ +L P + L+ QYRM + + YEG L+ G
Sbjct: 1318 NEEARKGGLDVSLFK--LLSDTHPDSVVNLEHQYRMCEDVMALSNELIYEGHLKCGT--E 1373
Query: 651 ERQSSGIDFPWP 662
E + +D P+P
Sbjct: 1374 ELRLRKLDIPFP 1385
Score = 130 (50.8 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 681 ASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLY 740
A G +N EA V ++V + + GV ++IGV+T Y Q A + + + R
Sbjct: 1448 AKGNRIVNPVEAQLVVQLVESLMTLGVPANEIGVMTHYRSQLALLKHKLLRGKNTGDAT- 1506
Query: 741 KEIEVASVDSFQGREKDYIILSCVRSNE 768
+E+ + D FQGR+K+ ++LS VRSNE
Sbjct: 1507 -AVEMHTADRFQGRDKEVVVLSLVRSNE 1533
Score = 116 (45.9 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 391 LNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
LN Q AV+ V+ + +L+ G PGTGKT T A I+ + +QG+ VL+ + ++ AVD
Sbjct: 1150 LNVDQKKAVEKVMSAKDYALVLGMPGTGKTTTIAHIIRALIRQGKS-VLLTSYTHSAVDN 1208
Query: 450 LAEKISATGLKVVRLCAKSR 469
+ K+ + V+RL A ++
Sbjct: 1209 ILLKLKGDSIPVLRLGAPAK 1228
Score = 49 (22.3 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 119 AGLSFEETG-DDVEGFEYGKADF 140
AG+ F +TG DDV G ++G DF
Sbjct: 485 AGVQFGDTGSDDVFGDDFG-GDF 506
Score = 45 (20.9 bits), Expect = 0.00064, Sum P(4) = 0.00064
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 611 VLLGLK----PI-RLQVQYRMHPSLSEF------PSNSFYE-GTLQNGVTINERQSSGID 658
+LL LK P+ RL ++HP + EF P NSF E T + + + GI
Sbjct: 1209 ILLKLKGDSIPVLRLGAPAKVHPEVQEFATLAAQPMNSFEEIRTAWHDLPVVATTCLGIS 1268
Query: 659 FP 660
P
Sbjct: 1269 HP 1270
Score = 44 (20.5 bits), Expect = 0.00064, Sum P(4) = 0.00064
Identities = 17/75 (22%), Positives = 32/75 (42%)
Query: 505 EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANF-RFRQVLIDESTQA 563
E EL+++ + A T R SA C + + P+ R++ +D++
Sbjct: 509 EAAELAATQSAQQGAAHNQTTRSTRASASA-CASALTHPSPKARVIQRYKVTRVDDAVYT 567
Query: 564 TE-----PECLIPLV 573
T+ PE ++ LV
Sbjct: 568 TDTGRGCPEKILLLV 582
Score = 39 (18.8 bits), Expect = 1.9e-23, Sum P(4) = 1.9e-23
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 92 LAATSSPSKRGANNSSNTST 111
LAAT S + A+N + ST
Sbjct: 513 LAATQSAQQGAAHNQTTRST 532
Score = 38 (18.4 bits), Expect = 1.4e-16, Sum P(4) = 1.4e-16
Identities = 34/176 (19%), Positives = 68/176 (38%)
Query: 268 FPKEDNELRLVPGDELRLRYSG--DAAHPAWQSV-GHVIKLTAQEEVALE---LRASQGV 321
FPK D + G++ + S D W + G + A +V ++ R + V
Sbjct: 740 FPKSDAIVHGRNGEKANMCVSKLLDVEEHVWSPMYGLKGNIDATVQVTMKDGNNRRNLTV 799
Query: 322 PVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPR 381
P ++ G +V+ ++ + + + + D G +Y+ + + VR+ L R
Sbjct: 800 PFEVKTGKNVNSNHQAQT--ALYNLLLSDRYDIEIAYGILYYMETSQTIRIPAVRHEL-R 856
Query: 382 RFGAPGLPELNASQVFA-VKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ 436
+ + N + +SV P+ + G TS I + +A G G+
Sbjct: 857 HM----VMQRNTLACYIRERSVQLPPMKKAKNACGRCYAQTSCFIYHKLADDGDGE 908
>UNIPROTKB|H0Y455 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 GO:GO:0017108 GO:GO:0043142 GO:GO:0033567
PANTHER:PTHR10887:SF14 EMBL:AL136233 HGNC:HGNC:2939
ProteinModelPortal:H0Y455 PRIDE:H0Y455 Ensembl:ENST00000440722
Bgee:H0Y455 Uniprot:H0Y455
Length = 375
Score = 207 (77.9 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 56/176 (31%), Positives = 96/176 (54%)
Query: 474 SPVEHLTLH---YQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQ 530
S V+++ L +++ L + ++H Q EQ E+ S K K+L A E+
Sbjct: 2 SAVDNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQ-EICRS--KSIKSL--ALLEELYN 56
Query: 531 SADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGP 590
S ++ TC+G P + F ++DE++Q ++P CL PL +++ VLVGDH QL P
Sbjct: 57 SQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQPICLGPLFF-SRRFVLVGDHQQLPP 115
Query: 591 VIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNG 646
+++ ++A G+++SLF+RL ++L VQYRM+ + + YEG L+ G
Sbjct: 116 LVLNREARALGMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECG 171
Score = 144 (55.7 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 658 DFPWPV----PNRPMFFYVQ---MGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPS 710
D PW + PN P+ F E++ G S N TEA + + + F+++G PS
Sbjct: 200 DNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPS 257
Query: 711 QIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
IG+I PY Q I + ++R+ + +EV +VD +QGR+K +++S VRSN+
Sbjct: 258 DIGIIAPYRQQLKIINDLLARSIGM-------VEVNTVDKYQGRDKSIVLVSFVRSNK 308
>POMBASE|SPBC16D10.04c [details] [associations]
symbol:dna2 "DNA replication endonuclease-helicase
Dna2" species:4896 "Schizosaccharomyces pombe" [GO:0000084 "S phase
of mitotic cell cycle" evidence=IC] [GO:0000723 "telomere
maintenance" evidence=IGI] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=ISO] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004518 "nuclease activity"
evidence=IMP] [GO:0004527 "exonuclease activity" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0019901 "protein
kinase binding" evidence=IPI] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IMP] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IMP] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0071932 "replication fork reversal" evidence=IMP]
InterPro:IPR026851 PomBase:SPBC16D10.04c InterPro:IPR014808
Pfam:PF08696 GO:GO:0005829 GO:GO:0005524 GO:GO:0046872
EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0051539
GO:GO:0043596 GO:GO:0004003 GO:GO:0004527 GO:GO:0000084
eggNOG:COG1112 GO:GO:0000784 GO:GO:0042162 GO:GO:0031573
GO:GO:0017108 GO:GO:0043137 GO:GO:0031860 GO:GO:0043142
PANTHER:PTHR10887:SF14 EMBL:AF144384 EMBL:AB028014 EMBL:AF075169
PIR:T39568 PIR:T47242 PIR:T51292 RefSeq:NP_596499.2 STRING:Q9URU2
GeneID:2540148 OrthoDB:EOG47H8Z4 NextBio:20801284 GO:GO:0071932
InterPro:IPR022765 Pfam:PF01930 Uniprot:Q9URU2
Length = 1397
Score = 272 (100.8 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 84/265 (31%), Positives = 139/265 (52%)
Query: 523 ATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLV 582
A+ + + ++ C+ +G +F +IDE++Q P CL PL L A++ VLV
Sbjct: 1030 ASLKHFYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLPICLGPLQL-AEKFVLV 1088
Query: 583 GDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIR-LQVQYRMHPSLSEFPSNSFYEG 641
GDH QL P++ + ++ GL+ SLF+ L + + L++QYRM+ ++ S Y G
Sbjct: 1089 GDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQYRMNEDINSLSSELIYGG 1148
Query: 642 TLQNGV-TINERQ--------SSGI-----DFPWPV----PNRPMFFYVQMGQEEISASG 683
L G TI++++ S G+ W P+ + F+ + +
Sbjct: 1149 NLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVESKT 1208
Query: 684 TSYL-NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKE 742
+ L N TEA +E+ V++FL GV S IG+I+ Y+ Q V +S+N L+ + E
Sbjct: 1209 NNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQ----VELLSKN--LKS--FTE 1260
Query: 743 IEVASVDSFQGREKDYIILSCVRSN 767
IE+ +VD +QGR+KD I++S VRSN
Sbjct: 1261 IEINTVDRYQGRDKDIILISFVRSN 1285
Score = 94 (38.1 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 391 LNASQVFAVKSV-LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
LN Q+ A+K SLI G PGTGKT T ++++ + + + ++L+ + +++AVD
Sbjct: 932 LNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKK-KILLTSFTHLAVDN 990
Query: 450 LAEKISATGLKVVRL 464
+ K+ +VRL
Sbjct: 991 ILIKLKGCDSTIVRL 1005
>UNIPROTKB|F1SBP9 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035279 "mRNA cleavage involved in gene silencing by
miRNA" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] GO:GO:0000932 GO:GO:0035279 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
OMA:VRFFKLD EMBL:CU861480 RefSeq:XP_003481536.1 UniGene:Ssc.19573
Ensembl:ENSSSCT00000007422 GeneID:100521086 KEGG:ssc:100521086
Uniprot:F1SBP9
Length = 1001
Score = 240 (89.5 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
Identities = 69/212 (32%), Positives = 112/212 (52%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL---------GLKP---IRLQVQYR 625
Q+VL GD QLGPV+ C + GL SL ERL+ G P +L YR
Sbjct: 674 QLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYR 733
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS 685
HP++ + P+ +YEG LQ + +R+ P P+ F+ MG++E + S
Sbjct: 734 SHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQGFPIIFHGVMGKDEREGNSPS 793
Query: 686 YLNRTEAANV----EKIVTTFLRSG---VVPSQIGVITPYEGQRAYIVNYMSR-NGALRQ 737
+ N EAA V ++++T+ + G + P +GVI+PY Q I + +++ + LR
Sbjct: 794 FFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRG 853
Query: 738 -QLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 854 LDDIKDLKVGSVEEFQGQERSVILISTVRSSQ 885
Score = 122 (48.0 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 390 ELNASQVFAVKSVLQ---RPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A+K ++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 498 ESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 557
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSRE 470
D L +++ + RL A SR+
Sbjct: 558 SGADLLCQRLRVHLPSSIYRLLAPSRD 584
Score = 108 (43.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 34/94 (36%), Positives = 46/94 (48%)
Query: 530 QSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK------- 577
Q V+ T + A A F F + IDE+ + EPE L+ + +L K
Sbjct: 614 QEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGG 673
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
Q+VL GD QLGPV+ C + GL SL ERL+
Sbjct: 674 QLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLL 707
Score = 39 (18.8 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 434 QGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD 489
QG + AP +A ++ ++ A LK K R + +E L + + +RH D
Sbjct: 309 QGTNIFTAPKEIA--EIKAQLEAA-LKWRNYEVKLRLLLH--LEELQMEHDIRHYD 359
>UNIPROTKB|Q5ZKG3 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9031 "Gallus gallus" [GO:0005524
"ATP binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=ISS] [GO:0000076 "DNA replication
checkpoint" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0004518
"nuclease activity" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
activity" evidence=ISS] [GO:0043142 "single-stranded DNA-dependent
ATPase activity" evidence=ISS] [GO:0017108 "5'-flap endonuclease
activity" evidence=ISS] [GO:0045740 "positive regulation of DNA
replication" evidence=ISS] [GO:0006264 "mitochondrial DNA
replication" evidence=ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=ISS] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0005760
"gamma DNA polymerase complex" evidence=ISS] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0051539 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0000729 GO:GO:0017108 GO:GO:0000076 GO:GO:0043137
GO:GO:0043139 GO:GO:0043142 GO:GO:0006264 PANTHER:PTHR10887:SF14
EMBL:AJ720121 EMBL:AADN02028013 IPI:IPI00596013
RefSeq:NP_001006497.1 UniGene:Gga.42409 STRING:Q5ZKG3 GeneID:423688
KEGG:gga:423688 CTD:1763 HOGENOM:HOG000168456 HOVERGEN:HBG081456
KO:K10742 NextBio:20826122 Uniprot:Q5ZKG3
Length = 992
Score = 246 (91.7 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 85/287 (29%), Positives = 146/287 (50%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGE 508
L +SA G V+ L + + AV + + L ++V L ++H +++ +E E
Sbjct: 630 LVRILSACGFSVL-LTSFTHTAVDNILLKLA-KFKVGFLRLGRAQKVHPDIRKFTEE--E 685
Query: 509 LSSSDEKKYKALKRATE-REISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPE 567
+ S K++K T+ E+ S V+ C+G P +F ++DE++Q ++P
Sbjct: 686 ICRS-----KSIKSVTDLEELYNSQPVVATACMGINHPIFVQKQFDFCIVDEASQISQPI 740
Query: 568 CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMH 627
CL PL +K+ VLVGDH QL P++ +A G+++SLF+RL ++L VQYRM+
Sbjct: 741 CLGPLFC-SKRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLEQNQNAVVQLTVQYRMN 799
Query: 628 PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYL 687
+ + YEG L+ G +E+ S+ +PN ++M + E + + ++L
Sbjct: 800 SKIMSLSNKLVYEGKLECG---SEKVSNATA---NLPN------LKMLKLEFADASKTWL 847
Query: 688 NRTEAANVEKIVTTFL---RSGVVPSQIGVITPYEGQRAYIVNYMSR 731
E +K V FL ++G PS IG+I+PY Q I + M+R
Sbjct: 848 K--EVLEPDKPVC-FLNTEKAGCRPSDIGIISPYRHQLKVITDLMAR 891
Score = 114 (45.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 704 RSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSC 763
++G PS IG+I+PY Q I + M+R L++ +EV ++D +QGR+K II+S
Sbjct: 864 KAGCRPSDIGIISPYRHQLKVITDLMAR---LKEN---RVEVNTIDKYQGRDKSIIIVSF 917
Query: 764 VR-SNEHQRNRYVK 776
VR SN+ +K
Sbjct: 918 VRNSNDENLGALLK 931
Score = 98 (39.6 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 372 VQMVRNTLP---RRFGAPGLPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVY 427
+Q + + LP + A L LN Q A+K VL R +LI G PGTGKT T A+V
Sbjct: 573 IQHLSSVLPPEAKEAVASILKGLNKPQKQAMKQVLLSRDYTLIVGMPGTGKTTTICALVR 632
Query: 428 HMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRL 464
++ G VL+ + ++ AVD + K++ + +RL
Sbjct: 633 ILSACGFS-VLLTSFTHTAVDNILLKLAKFKVGFLRL 668
>MGI|MGI:2443732 [details] [associations]
symbol:Dna2 "DNA replication helicase 2 homolog (yeast)"
species:10090 "Mus musculus" [GO:0000076 "DNA replication
checkpoint" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=ISO]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006264 "mitochondrial DNA
replication" evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0008152
"metabolic process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0032508 "DNA
duplex unwinding" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=ISO] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0043504 "mitochondrial DNA repair" evidence=ISO] [GO:0045740
"positive regulation of DNA replication" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR026851 InterPro:IPR014808
MGI:MGI:2443732 Pfam:PF08696 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0042645 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0000729 GO:GO:0017108 GO:GO:0000076 GO:GO:0043137
GO:GO:0005760 GO:GO:0043139 GO:GO:0043142 GO:GO:0043504
GO:GO:0006264 PANTHER:PTHR10887:SF14 CTD:1763 HOGENOM:HOG000168456
HOVERGEN:HBG081456 KO:K10742 EMBL:AK129051 EMBL:AK028381
EMBL:BC025182 EMBL:BC115716 IPI:IPI00224915 IPI:IPI00816966
RefSeq:NP_796346.2 UniGene:Mm.21492 ProteinModelPortal:Q6ZQJ5
SMR:Q6ZQJ5 STRING:Q6ZQJ5 PaxDb:Q6ZQJ5 PRIDE:Q6ZQJ5
Ensembl:ENSMUST00000092462 Ensembl:ENSMUST00000131422 GeneID:327762
KEGG:mmu:327762 UCSC:uc007fji.2 UCSC:uc007fjj.2
GeneTree:ENSGT00550000074852 InParanoid:Q6ZQJ5 OMA:EHESLCH
ChiTaRS:DNA2 NextBio:397947 Bgee:Q6ZQJ5 CleanEx:MM_DNA2
Genevestigator:Q6ZQJ5 GermOnline:ENSMUSG00000036875 Uniprot:Q6ZQJ5
Length = 1062
Score = 206 (77.6 bits), Expect = 5.4e-23, Sum P(3) = 5.4e-23
Identities = 59/198 (29%), Positives = 105/198 (53%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGE 508
L +SA G V+ L + + AV + + L ++V L + ++H +Q+ +E E
Sbjct: 662 LVRILSACGFSVL-LTSYTHSAVDNILLKLA-KFKVGFLRLGQSHKVHPDIQKFTEE--E 717
Query: 509 LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC 568
+ S + +L A E+ S ++ TC+G P + F ++DE++Q ++P C
Sbjct: 718 ICRS--RSIASL--AHLEELYNSHPIVATTCMGINHPIFSRKTFDFCIVDEASQISQPVC 773
Query: 569 LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHP 628
L PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+
Sbjct: 774 LGPLFF-SRRFVLVGDHQQLPPLVVNREARALGMSESLFKRLERNESAVVQLTVQYRMNR 832
Query: 629 SLSEFPSNSFYEGTLQNG 646
+ + Y G L+ G
Sbjct: 833 KIMSLSNKLTYAGKLECG 850
Score = 152 (58.6 bits), Expect = 5.4e-23, Sum P(3) = 5.4e-23
Identities = 42/118 (35%), Positives = 62/118 (52%)
Query: 658 DFPWPV----PNRPMFFYVQ---MGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPS 710
D PW P+ P+ F E++ G S N TEA + + +TF+++G PS
Sbjct: 879 DSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVS--NVTEARLIVFLTSTFIKAGCSPS 936
Query: 711 QIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
IGVI PY Q I + ++R+ +EV +VD +QGR+K I++S VRSNE
Sbjct: 937 DIGVIAPYRQQLRIISDLLARSSV------GMVEVNTVDKYQGRDKSLILVSFVRSNE 988
Score = 91 (37.1 bits), Expect = 6.1e-11, Sum P(3) = 6.1e-11
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T A+V ++ G VL+ + ++ A
Sbjct: 624 LKGLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALVRILSACGFS-VLLTSYTHSA 682
Query: 447 VDQLAEKISATGLKVVRL 464
VD + K++ + +RL
Sbjct: 683 VDNILLKLAKFKVGFLRL 700
Score = 45 (20.9 bits), Expect = 5.4e-23, Sum P(3) = 5.4e-23
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 446 CLMLTLESQSKDN 458
Score = 40 (19.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 470 EAVSSPVEHLTLHYQVRHL 488
EA+ S ++ T H Q+ HL
Sbjct: 421 EAMLSKIQEETRHLQLAHL 439
>UNIPROTKB|I3LBB7 [details] [associations]
symbol:I3LBB7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] InterPro:IPR026851 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 EMBL:CU468421
Ensembl:ENSSSCT00000030264 OMA:STCHITH Uniprot:I3LBB7
Length = 249
Score = 274 (101.5 bits), Expect = 7.5e-23, P = 7.5e-23
Identities = 79/252 (31%), Positives = 131/252 (51%)
Query: 540 VGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAAR 599
+G P + F ++DE++Q ++P CL PL +++ VLVGDH QL P+++ ++A
Sbjct: 1 MGINHPIFSRKTFDFCIVDEASQISQPICLGPLFF-SRRFVLVGDHQQLPPLVLNREARA 59
Query: 600 AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNG------VTINERQ 653
G+++SLF+RL ++L VQYRM+ + + YEG L+ G +N +
Sbjct: 60 LGMSESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVASAVVNLPK 119
Query: 654 SSGI--------DF---PWPV----PNRPMFFYVQ---MGQEEISASGTSYLNRTEAANV 695
+ D+ PW V PN P+ F E++ G S N TEA V
Sbjct: 120 LKDVKLELEFYADYSENPWMVGAFEPNNPVCFLNTDKVPAPEQVEKGGVS--NITEAKLV 177
Query: 696 EKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGRE 755
+ + F+++G P IG+I PY Q+ ++N + + ++ +EV +VD +QGR+
Sbjct: 178 VYLTSIFVKAGCNPCNIGIIAPYR-QQLKVINDLLSHSSVGM-----VEVNTVDKYQGRD 231
Query: 756 KDYIILSCVRSN 767
K I++S VRSN
Sbjct: 232 KSIILVSFVRSN 243
>UNIPROTKB|P51530 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0005524
"ATP binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0042645
"mitochondrial nucleoid" evidence=IDA] [GO:0043504 "mitochondrial
DNA repair" evidence=IDA] [GO:0006264 "mitochondrial DNA
replication" evidence=IDA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA] [GO:0045740 "positive regulation of DNA
replication" evidence=IDA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IDA] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0005760
"gamma DNA polymerase complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000076 "DNA replication checkpoint"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IDA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000729 "DNA double-strand
break processing" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0032201 "telomere
maintenance via semi-conservative replication" evidence=TAS]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0032508 "DNA
duplex unwinding" evidence=IDA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0051539 GO:GO:0042645 GO:GO:0000084 GO:GO:0016890
eggNOG:COG1112 GO:GO:0045740 GO:GO:0000722 GO:GO:0000729
GO:GO:0017108 Reactome:REACT_383 GO:GO:0000076 GO:GO:0043137
GO:GO:0043139 GO:GO:0043142 GO:GO:0043504 GO:GO:0006264
PANTHER:PTHR10887:SF14 CTD:1763 HOGENOM:HOG000168456
HOVERGEN:HBG081456 KO:K10742 EMBL:D42046 EMBL:AL136233
EMBL:BC041115 EMBL:BC053574 EMBL:BC063664 EMBL:BC111740
EMBL:BC028188 IPI:IPI00216142 IPI:IPI00816670 IPI:IPI00816801
PIR:T50697 RefSeq:NP_001073918.2 UniGene:Hs.532446
ProteinModelPortal:P51530 SMR:P51530 STRING:P51530
PhosphoSite:P51530 DMDM:119370373 PaxDb:P51530 PRIDE:P51530
Ensembl:ENST00000358410 Ensembl:ENST00000399179
Ensembl:ENST00000549829 GeneID:1763 KEGG:hsa:1763 UCSC:uc021prt.1
GeneCards:GC10M070173 HGNC:HGNC:2939 HPA:HPA037487 MIM:601810
neXtProt:NX_P51530 InParanoid:P51530 GenomeRNAi:1763 NextBio:7187
ArrayExpress:P51530 Bgee:P51530 CleanEx:HS_DNA2
Genevestigator:P51530 GermOnline:ENSG00000138346 GO:GO:0032201
Uniprot:P51530
Length = 1060
Score = 212 (79.7 bits), Expect = 7.9e-23, Sum P(3) = 7.9e-23
Identities = 61/197 (30%), Positives = 104/197 (52%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL 509
L + A G V+ L + + AV + + L +++ L + ++H Q EQ E+
Sbjct: 661 LVRILYACGFSVL-LTSYTHSAVDNILLKLA-KFKIGFLRLGQIQKVHPAIQQFTEQ-EI 717
Query: 510 SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL 569
S K K+L A E+ S ++ TC+G P + F ++DE++Q ++P CL
Sbjct: 718 CRS--KSIKSL--ALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQPICL 773
Query: 570 IPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPS 629
PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+
Sbjct: 774 GPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTVQYRMNSK 832
Query: 630 LSEFPSNSFYEGTLQNG 646
+ + YEG L+ G
Sbjct: 833 IMSLSNKLTYEGKLECG 849
Score = 144 (55.7 bits), Expect = 7.9e-23, Sum P(3) = 7.9e-23
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 658 DFPWPV----PNRPMFFYVQ---MGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPS 710
D PW + PN P+ F E++ G S N TEA + + + F+++G PS
Sbjct: 878 DNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPS 935
Query: 711 QIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
IG+I PY Q I + ++R+ + +EV +VD +QGR+K +++S VRSN+
Sbjct: 936 DIGIIAPYRQQLKIINDLLARSIGM-------VEVNTVDKYQGRDKSIVLVSFVRSNK 986
Score = 86 (35.3 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 623 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFS-VLLTSYTHSA 681
Query: 447 VDQLAEKISATGLKVVRL 464
VD + K++ + +RL
Sbjct: 682 VDNILLKLAKFKIGFLRL 699
Score = 45 (20.9 bits), Expect = 7.9e-23, Sum P(3) = 7.9e-23
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 445 CLMLTLESQSKDN 457
>UNIPROTKB|J3KPX5 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 EMBL:AL136233
HGNC:HGNC:2939 OMA:EHESLCH ProteinModelPortal:J3KPX5
Ensembl:ENST00000399180 Uniprot:J3KPX5
Length = 1146
Score = 212 (79.7 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 61/197 (30%), Positives = 104/197 (52%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL 509
L + A G V+ L + + AV + + L +++ L + ++H Q EQ E+
Sbjct: 747 LVRILYACGFSVL-LTSYTHSAVDNILLKLA-KFKIGFLRLGQIQKVHPAIQQFTEQ-EI 803
Query: 510 SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL 569
S K K+L A E+ S ++ TC+G P + F ++DE++Q ++P CL
Sbjct: 804 CRS--KSIKSL--ALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQPICL 859
Query: 570 IPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPS 629
PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+
Sbjct: 860 GPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTVQYRMNSK 918
Query: 630 LSEFPSNSFYEGTLQNG 646
+ + YEG L+ G
Sbjct: 919 IMSLSNKLTYEGKLECG 935
Score = 144 (55.7 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 658 DFPWPV----PNRPMFFYVQ---MGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPS 710
D PW + PN P+ F E++ G S N TEA + + + F+++G PS
Sbjct: 964 DNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPS 1021
Query: 711 QIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
IG+I PY Q I + ++R+ + +EV +VD +QGR+K +++S VRSN+
Sbjct: 1022 DIGIIAPYRQQLKIINDLLARSIGM-------VEVNTVDKYQGRDKSIVLVSFVRSNK 1072
Score = 86 (35.3 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 709 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFS-VLLTSYTHSA 767
Query: 447 VDQLAEKISATGLKVVRL 464
VD + K++ + +RL
Sbjct: 768 VDNILLKLAKFKIGFLRL 785
Score = 45 (20.9 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 531 CLMLTLESQSKDN 543
>UNIPROTKB|Q0V8H6 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391
HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 EMBL:BT026242 EMBL:BC148151
IPI:IPI00691419 RefSeq:NP_001069307.1 UniGene:Bt.2939
ProteinModelPortal:Q0V8H6 STRING:Q0V8H6 Ensembl:ENSBTAT00000018997
GeneID:523206 KEGG:bta:523206 CTD:4343 InParanoid:Q0V8H6
OMA:VRFFKLD NextBio:20873687 Uniprot:Q0V8H6
Length = 1003
Score = 229 (85.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 66/212 (31%), Positives = 107/212 (50%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL---------GLKP---IRLQVQYR 625
Q+VL GD QLGPV+ C + GL SL ERL+ G P +L YR
Sbjct: 674 QLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALYKKGPDGYNPQFITKLLRNYR 733
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS 685
HP++ + P+ +Y+G LQ + +R+ P + P+ F+ MG++E + S
Sbjct: 734 SHPTILDVPNRLYYDGELQACADVVDRERFCRWEGLPRQDFPIIFHGVMGKDEREGNSPS 793
Query: 686 YLNRTEAANVEKIVTTFL-------RSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQ 738
+ N EAA V + L ++ + P +GVI+PY Q I +++ +
Sbjct: 794 FFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDKQLRG 853
Query: 739 L--YKEIEVASVDSFQGREKDYIILSCVRSNE 768
L K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 854 LDDIKDLKVGSVEEFQGQERSVILISTVRSSQ 885
Score = 122 (48.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 390 ELNASQVFAVKSVLQ---RPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A+K ++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 498 ESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 557
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSRE 470
D L +++ + RL A SR+
Sbjct: 558 SGADLLCQRLRVHLPSSIYRLLAPSRD 584
Score = 109 (43.4 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 34/94 (36%), Positives = 46/94 (48%)
Query: 530 QSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK------- 577
Q V+ T + A A F F + IDE+ A EPE L+ + ++ K
Sbjct: 614 QEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEPESLVAIAGLMEVKEADNPGG 673
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
Q+VL GD QLGPV+ C + GL SL ERL+
Sbjct: 674 QLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLL 707
Score = 37 (18.1 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 434 QGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD 489
+G + AP +A ++ ++ T LK K R + +E L + + +RH D
Sbjct: 309 RGTSIFTAPKEIA--EIKAQLQTT-LKWRNYEVKLRLLLH--LEELQMEHDIRHYD 359
>WB|WBGene00016566 [details] [associations]
symbol:eri-7 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0019079 "viral
genome replication" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 GO:GO:0000003
GO:GO:0017111 InterPro:IPR014001 SMART:SM00487 EMBL:FO080509
GeneTree:ENSGT00700000104572 PIR:T28788 RefSeq:NP_491374.2
ProteinModelPortal:O01976 SMR:O01976 EnsemblMetazoa:C41D11.7
GeneID:172047 KEGG:cel:CELE_C41D11.7 UCSC:C41D11.7.1 CTD:172047
WormBase:C41D11.7 InParanoid:O01976 OMA:NDEEMIN NextBio:873807
ArrayExpress:O01976 Uniprot:O01976
Length = 625
Score = 206 (77.6 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 86/298 (28%), Positives = 139/298 (46%)
Query: 387 GLPELNASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444
G+P N Q A+K L R + IQGPPGTGKT T ++ + +Q + QV+V AP+
Sbjct: 62 GIPFSNEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCRLIQQKK-QVVVLAPTR 120
Query: 445 VAVDQLAEKISATGLKVVRLCAKSRE-AVSSPVEHL-TLHYQVRHLDTSEKSELHKLQQL 502
A+ + T LK R+ K E A+ E+ ++ R L +E E+ L++
Sbjct: 121 EALANIRMMTKKT-LK--RMGIKVHEHALMDTNEYRDVINKSDRALMAAE--EVRDLRKA 175
Query: 503 KDEQGELSSS--DEKKYKALKRATER---EISQSADVICCTCVGAG--DPRLANFRFRQV 555
D GE++ + DE + + R E+ + V T +GA D + + +F
Sbjct: 176 FDN-GEITENVLDEMRQSIINRVRNEVGAEVIGNVRVAFAT-IGASFVDFVMKHKKFDPC 233
Query: 556 L--IDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL 613
L IDE+ Q E + P V K++V+ GD QL ++ +A GL S+ +R++
Sbjct: 234 LCIIDEAAQVMEAQTW-PAVYKMKRIVMAGDPKQLPALVFTDEAKAFGLQNSVMDRILEK 292
Query: 614 --GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMF 669
I L+ QYR + ++ + + FY L+ V +E I P P R +F
Sbjct: 293 KNNFSWIMLENQYRSNAKIATWSNTCFYHNQLKTDVKCHEYSLHTILNPQPKKFRNLF 350
Score = 136 (52.9 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 683 GTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQL-YK 741
G SY N EA L+ GV PS I +ITPY+GQ + + M GA +
Sbjct: 387 GFSYANLAEAKIAIGHYQRLLKYGVQPSDIAIITPYKGQTSLVTKLMEEFGAETGYTDFV 446
Query: 742 EIEVASVDSFQGREKDYIILSCVRSNEHQRNRYV 775
+ + +VDS QG+E + +I + VRSN + +V
Sbjct: 447 QTTIGTVDSVQGKEYEVVIFTMVRSNPRKTMGFV 480
Score = 47 (21.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
E LTL V ++ EL+ ++ E G + S+EK+ A+K A ++++ ++C
Sbjct: 33 ESLTLQ-DVLESHMTDPIELNSFDSMEKEAG-IPFSNEKQRTAIKMA----LNENRKLVC 86
Score = 43 (20.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 34/135 (25%), Positives = 52/135 (38%)
Query: 215 VFLLGFISAKTESVVVLLCREPCLN---MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKE 271
+ L I K + VV+ RE N M K++ + + + + L V K
Sbjct: 101 LLLCRLIQQKKQVVVLAPTREALANIRMMTKKTLKRMGIKVH-EHALMDTNEYRDVINKS 159
Query: 272 DNELRLVPGDELR-LRYS---GDAAHPAWQSVGHVIKLTAQEEVALELRASQGVP-VDIN 326
D L + +E+R LR + G+ + I + EV E+ + V I
Sbjct: 160 DRAL--MAAEEVRDLRKAFDNGEITENVLDEMRQSIINRVRNEVGAEVIGNVRVAFATIG 217
Query: 327 HGFSVDFVWKSTSFD 341
F VDFV K FD
Sbjct: 218 ASF-VDFVMKHKKFD 231
>MGI|MGI:97054 [details] [associations]
symbol:Mov10 "Moloney leukemia virus 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISO] InterPro:IPR003593 SMART:SM00382
MGI:MGI:97054 GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
HOVERGEN:HBG052500 EMBL:X52574 EMBL:AK004542 EMBL:BC053743
EMBL:X75819 IPI:IPI00130328 PIR:A39611 RefSeq:NP_001156912.1
RefSeq:NP_001156913.1 RefSeq:NP_032645.2 UniGene:Mm.1597
ProteinModelPortal:P23249 SMR:P23249 DIP:DIP-48575N STRING:P23249
PhosphoSite:P23249 PaxDb:P23249 PRIDE:P23249
Ensembl:ENSMUST00000168015 GeneID:17454 KEGG:mmu:17454
NextBio:292100 Bgee:P23249 Genevestigator:P23249
GermOnline:ENSMUSG00000002227 Uniprot:P23249
Length = 1004
Score = 224 (83.9 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 66/213 (30%), Positives = 105/213 (49%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL---------GLKP---IRLQVQYR 625
Q+VL GD QLGPV+ A + GL SL ERL+ G P +L YR
Sbjct: 675 QLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRNYR 734
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS 685
HP++ + P+ +Y+G LQ + +R+ P P+ F+ MG++E + S
Sbjct: 735 SHPTILDIPNQLYYDGELQACADVVDRERFCRWEGLPQQGFPIIFHGVMGKDEREGNSPS 794
Query: 686 YLNRTEAANVEKIVTTFL-------RSGVVPSQIGVITPYEGQRA---YIVNYMSRNGAL 735
+ N EAA V + L ++ + P +GVI+PY Q Y + + R
Sbjct: 795 FFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRG 854
Query: 736 RQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+ K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 855 LDDI-KDLKVGSVEEFQGQERSVILISTVRSSQ 886
Score = 123 (48.4 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 390 ELNASQVFAVKSVLQ---RPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A+K +++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 499 ESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 558
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSRE 470
D L +++ + RL A SR+
Sbjct: 559 SGADLLCQRLRVHLPSSIYRLLAPSRD 585
Score = 100 (40.3 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 530 QSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK------- 577
Q V+ T + A A F F + IDE+ EPE L+ + ++ K
Sbjct: 615 QQYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGG 674
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
Q+VL GD QLGPV+ A + GL SL ERL+
Sbjct: 675 QLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLL 708
Score = 43 (20.2 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 434 QGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD 489
QG + AP VA ++ ++ T LK K R + +E L + + +RH D
Sbjct: 310 QGPSIFTAPKEVA--EIKAQLETT-LKSRNYEVKLRLLLH--LEELQMEHDIRHYD 360
>UNIPROTKB|J9P7Z9 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:AAEX03011080 EMBL:AAEX03011081
Ensembl:ENSCAFT00000044224 Uniprot:J9P7Z9
Length = 983
Score = 224 (83.9 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 67/212 (31%), Positives = 107/212 (50%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL---------GLKP---IRLQVQYR 625
Q+VL GD QLGPV+ + GL SL ERL+ G P +L YR
Sbjct: 654 QLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNALYKKGSNGYNPQFITKLLRNYR 713
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS 685
HP++ + P+ +YEG LQ + +R+ P P+ F+ MG++E + S
Sbjct: 714 SHPTILDIPNQLYYEGELQACADVVDRERFCHWEGLPRQGFPIIFHGVMGKDEREGNSPS 773
Query: 686 YLNRTEAANVEKIVTTFL-------RSGVVPSQIGVITPYEGQRAYIVNYMSR-NGALRQ 737
+ N EAA V + L ++ + P +GVI+PY Q I + +++ + LR
Sbjct: 774 FFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRG 833
Query: 738 -QLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 834 LDDIKDLKVGSVEEFQGQERSVILISTVRSSQ 865
Score = 122 (48.0 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 390 ELNASQVFAVKSVLQ---RPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A+K ++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 478 ESNPEQLQAMKYIIMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 537
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSRE 470
D L +++ + RL A SR+
Sbjct: 538 SGADLLCQRLRVHLPSSIYRLLAPSRD 564
Score = 96 (38.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 32/94 (34%), Positives = 45/94 (47%)
Query: 530 QSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK------- 577
Q V+ T + A A F F + IDE+ + EPE L+ + ++ K
Sbjct: 594 QEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLMEVKETDNPGG 653
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
Q+VL GD QLGPV+ + GL SL ERL+
Sbjct: 654 QLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLL 687
>UNIPROTKB|F1P7T4 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035279 "mRNA cleavage involved in gene
silencing by miRNA" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 GO:GO:0000932 GO:GO:0035279 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
OMA:VRFFKLD EMBL:AAEX03011080 EMBL:AAEX03011081 RefSeq:XP_540337.3
Ensembl:ENSCAFT00000021339 GeneID:483219 KEGG:cfa:483219
Uniprot:F1P7T4
Length = 1003
Score = 224 (83.9 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 67/212 (31%), Positives = 107/212 (50%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL---------GLKP---IRLQVQYR 625
Q+VL GD QLGPV+ + GL SL ERL+ G P +L YR
Sbjct: 674 QLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNALYKKGSNGYNPQFITKLLRNYR 733
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS 685
HP++ + P+ +YEG LQ + +R+ P P+ F+ MG++E + S
Sbjct: 734 SHPTILDIPNQLYYEGELQACADVVDRERFCHWEGLPRQGFPIIFHGVMGKDEREGNSPS 793
Query: 686 YLNRTEAANVEKIVTTFL-------RSGVVPSQIGVITPYEGQRAYIVNYMSR-NGALRQ 737
+ N EAA V + L ++ + P +GVI+PY Q I + +++ + LR
Sbjct: 794 FFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRG 853
Query: 738 -QLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 854 LDDIKDLKVGSVEEFQGQERSVILISTVRSSQ 885
Score = 122 (48.0 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 390 ELNASQVFAVKSVLQ---RPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A+K ++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 498 ESNPEQLQAMKYIIMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 557
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSRE 470
D L +++ + RL A SR+
Sbjct: 558 SGADLLCQRLRVHLPSSIYRLLAPSRD 584
Score = 96 (38.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 32/94 (34%), Positives = 45/94 (47%)
Query: 530 QSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK------- 577
Q V+ T + A A F F + IDE+ + EPE L+ + ++ K
Sbjct: 614 QEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLMEVKETDNPGG 673
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
Q+VL GD QLGPV+ + GL SL ERL+
Sbjct: 674 QLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLL 707
>POMBASE|SPCC1739.03 [details] [associations]
symbol:hrr1 "Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0031379
"RNA-directed RNA polymerase complex" evidence=IDA] [GO:0031380
"nuclear RNA-directed RNA polymerase complex" evidence=IDA]
PomBase:SPCC1739.03 GO:GO:0005829 GO:GO:0005524 GO:GO:0007059
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003723 GO:GO:0006338
GO:GO:0007049 GO:GO:0030702 GO:GO:0004386 GO:GO:0031048
eggNOG:COG1112 GO:GO:0016585 GO:GO:0031380 PIR:T41111
RefSeq:NP_588411.2 DIP:DIP-29303N STRING:O74465
EnsemblFungi:SPCC1739.03.1 GeneID:2539248 OrthoDB:EOG4DRDMD
NextBio:20800418 Uniprot:O74465
Length = 999
Score = 201 (75.8 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 77/249 (30%), Positives = 119/249 (47%)
Query: 530 QSADVICCTCVGAGDPR--LANFRFRQVLIDESTQATEPECLIPLVLGA-KQVVLVGDHC 586
+ A+VI T G R L + I+E+ E +IP V + +Q+VL+GDH
Sbjct: 681 RGANVIGMTTTGLNKYRDILERINPKICFIEEAADVLEGP-IIPAVFPSLEQLVLIGDHK 739
Query: 587 QLGPVIMCKK-AARA---GLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGT 642
QL P C A R L+ S+FERLV ++ RL +Q RMHP + S S YE
Sbjct: 740 QLRPG--CSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVS-SVYEDL 796
Query: 643 LQNGVTINERQSSGIDFPWP-VPNRPMF--FYVQMGQEEISASGTSYLNRTEAANVEKIV 699
+T WP +P F++ + E + S +N EA + +
Sbjct: 797 SDYEITKY----------WPSIPGMGEIRRFFLTHSRIEDNDGFASKINLFEAQMLVQFA 846
Query: 700 TTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYI 759
+ +GV P +I +T Y Q+ I +S + L ++ + I+VA+VD +QG E D +
Sbjct: 847 VYLINNGVEPQKITCLTFYAAQKDLIERLLSES--LNREKHF-IKVATVDGYQGEENDVV 903
Query: 760 ILSCVRSNE 768
+LS VR+N+
Sbjct: 904 LLSLVRNND 912
Score = 144 (55.7 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 45/137 (32%), Positives = 76/137 (55%)
Query: 373 QMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432
Q + N L FG PG L++SQ+ A +S+L + +S+IQGPPGTGK+ + + + +
Sbjct: 356 QKIVNAL-EPFG-PGEYILDSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLEN 413
Query: 433 GQGQVL---VCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD 489
VL V +N AVDQ+ ++ G V+RL +++++ + V T+ + +H
Sbjct: 414 THSHVLPILVACQTNHAVDQILIRLLHQGASVMRLGSRTKDPEIAAV---TIFQKAKHTK 470
Query: 490 TSEKS---EL-HKLQQL 502
S K+ E+ HK Q+L
Sbjct: 471 HSFKAAYNEIRHKKQRL 487
Score = 41 (19.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 665 NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL 703
NR FY+++ +E I S ANV + TT L
Sbjct: 655 NRLYRFYLKVDRERIGFSNKRAAILLRGANVIGMTTTGL 693
>RGD|1598327 [details] [associations]
symbol:Mov10 "Moloney leukemia virus 10" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IEA;ISO] InterPro:IPR003593 SMART:SM00382
RGD:1598327 GO:GO:0005524 GO:GO:0017111 GO:GO:0000932 GO:GO:0035279
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:CH474015 OrthoDB:EOG4SXNC4
CTD:4343 IPI:IPI00192859 RefSeq:NP_001101181.1 UniGene:Rn.3508
Ensembl:ENSRNOT00000018061 GeneID:310756 KEGG:rno:310756
UCSC:RGD:1598327 NextBio:662562 Uniprot:D3ZUC2
Length = 1004
Score = 224 (83.9 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 66/213 (30%), Positives = 105/213 (49%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL---------GLKP---IRLQVQYR 625
Q+VL GD QLGPV+ A + GL SL ERL+ G P +L YR
Sbjct: 675 QLVLAGDPRQLGPVLRSPLAQKHGLGYSLLERLLTYNSLYKKGPNGYDPQFITKLLRNYR 734
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS 685
HP++ + P+ +Y+G LQ + +R+ P P+ F+ MG++E + S
Sbjct: 735 SHPTILDIPNQLYYDGELQACADVVDRERFCRWEGLPQQGFPIIFHGVMGKDEREGNSPS 794
Query: 686 YLNRTEAANVEKIVTTFL-------RSGVVPSQIGVITPYEGQRA---YIVNYMSRNGAL 735
+ N EAA V + L ++ + P +GVI+PY Q Y + + R
Sbjct: 795 FFNPEEAATVTSYLRQLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRG 854
Query: 736 RQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+ K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 855 LDDI-KDLKVGSVEEFQGQERSVILISTVRSSQ 886
Score = 119 (46.9 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 390 ELNASQVFAVKSVLQ---RPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A+K +++ RP +I GPPGTGKTVT + + K + +L C PSN
Sbjct: 499 ESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACTPSN 558
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSRE 470
D L +++ + RL A SR+
Sbjct: 559 SGADLLCQRLRVHLPSSIYRLLAPSRD 585
Score = 100 (40.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 530 QSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK------- 577
Q V+ T + A A F F + IDE+ EPE L+ + ++ K
Sbjct: 615 QQYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGG 674
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
Q+VL GD QLGPV+ A + GL SL ERL+
Sbjct: 675 QLVLAGDPRQLGPVLRSPLAQKHGLGYSLLERLL 708
Score = 40 (19.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 434 QGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD 489
QG + +P VA ++ ++ T LK K R + +E L + + +RH D
Sbjct: 310 QGPSIFTSPKEVA--EIKAQLETT-LKSRNYEVKLRLLLH--LEELQMEHDIRHYD 360
>UNIPROTKB|Q9HCE1 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0007219 "Notch signaling pathway" evidence=TAS] GO:GO:0005829
GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006355 GO:GO:0007219 GO:GO:0006351
GO:GO:0003723 GO:GO:0004386 GO:GO:0000932 GO:GO:0035279
eggNOG:COG1112 InterPro:IPR026122 PANTHER:PTHR10887:SF17
EMBL:AL603832 HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 CTD:4343
OMA:VRFFKLD EMBL:AB046851 EMBL:AK074174 EMBL:AL833353 EMBL:BC002548
EMBL:BC004499 EMBL:BC009312 IPI:IPI00444452 IPI:IPI00444454
IPI:IPI00929442 RefSeq:NP_001123551.1 RefSeq:NP_066014.1
UniGene:Hs.514941 ProteinModelPortal:Q9HCE1 SMR:Q9HCE1
DIP:DIP-44158N IntAct:Q9HCE1 STRING:Q9HCE1 PhosphoSite:Q9HCE1
DMDM:24638063 PaxDb:Q9HCE1 PRIDE:Q9HCE1 DNASU:4343
Ensembl:ENST00000357443 Ensembl:ENST00000369645
Ensembl:ENST00000413052 Ensembl:ENST00000544796 GeneID:4343
KEGG:hsa:4343 UCSC:uc001eck.3 GeneCards:GC01P113215 HGNC:HGNC:7200
MIM:610742 neXtProt:NX_Q9HCE1 PharmGKB:PA30908 HOVERGEN:HBG052500
InParanoid:Q9HCE1 PhylomeDB:Q9HCE1 ChiTaRS:MOV10 GenomeRNAi:4343
NextBio:17098 ArrayExpress:Q9HCE1 Bgee:Q9HCE1 CleanEx:HS_MOV10
Genevestigator:Q9HCE1 GermOnline:ENSG00000155363 Uniprot:Q9HCE1
Length = 1003
Score = 223 (83.6 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 66/213 (30%), Positives = 104/213 (48%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL---------GLKP---IRLQVQYR 625
Q+VL GD QLGPV+ + GL SL ERL+ G P +L YR
Sbjct: 674 QLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYR 733
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS 685
HP++ + P+ +YEG LQ + +R+ P P+ F+ MG++E + S
Sbjct: 734 SHPTILDIPNQLYYEGELQACADVVDRERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPS 793
Query: 686 YLNRTEAANVEKIVTTFL-------RSGVVPSQIGVITPYEGQRA---YIVNYMSRNGAL 735
+ N EAA V + L ++ + P +GVI+PY Q Y + + R
Sbjct: 794 FFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRG 853
Query: 736 RQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+ K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 854 LDDI-KDLKVGSVEEFQGQERSVILISTVRSSQ 885
Score = 118 (46.6 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 390 ELNASQVFAVKSVLQ---RPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A++ ++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 498 ESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 557
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSRE 470
D L +++ + RL A SR+
Sbjct: 558 SGADLLCQRLRVHLPSSIYRLLAPSRD 584
Score = 101 (40.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 530 QSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK------- 577
Q V+ T + AG A F F + IDE+ EPE L+ + ++ K
Sbjct: 614 QEYRVLITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGG 673
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
Q+VL GD QLGPV+ + GL SL ERL+
Sbjct: 674 QLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLL 707
Score = 41 (19.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 434 QGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD 489
QG + AP +A ++ ++ T LK K R + +E L + + +RH D
Sbjct: 309 QGTSIFTAPKEIA--EIKAQLE-TALKWRNYEVKLRLLLH--LEELQMEHDIRHYD 359
>TAIR|locus:2064158 [details] [associations]
symbol:EMB2765 "EMBRYO DEFECTIVE 2765" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901
GO:GO:0005886 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005681 GO:GO:0000398 eggNOG:COG1112 HOGENOM:HOG000170551
KO:K12874 OMA:RTKAVGH GO:GO:0097157 PANTHER:PTHR10887:SF5
EMBL:AY099864 IPI:IPI00544394 RefSeq:NP_850297.1 UniGene:At.23967
ProteinModelPortal:Q8L5Y4 SMR:Q8L5Y4 STRING:Q8L5Y4 PaxDb:Q8L5Y4
PRIDE:Q8L5Y4 EnsemblPlants:AT2G38770.1 GeneID:818459
KEGG:ath:AT2G38770 TAIR:At2g38770 InParanoid:Q8L5Y4
PhylomeDB:Q8L5Y4 ProtClustDB:CLSN2680117 Genevestigator:Q8L5Y4
Uniprot:Q8L5Y4
Length = 1509
Score = 244 (91.0 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 77/271 (28%), Positives = 134/271 (49%)
Query: 515 KKYKALKRATERE---ISQSADVICCTCVGAGDPRL----ANFRFRQVLIDESTQATEPE 567
+ ++ LK +R +++ A ++ TC A R F++ +L++ES Q E E
Sbjct: 1073 RAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIE 1132
Query: 568 CLIPLVL-----G---AKQVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPI 618
IP++L G K+ +L+GDH QL PV+ + + + QSLF R V LG+ I
Sbjct: 1133 TFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYI 1192
Query: 619 RLQVQYRMHPSLSEFPSNSFYE-GTLQ--NGVTINERQSSGIDFPWPVPNRPMFFYVQMG 675
L Q R PSL++ + + + G L I +R ++G + + + N P + G
Sbjct: 1193 ELNAQGRARPSLAKLYNWRYRDLGDLSIVKEAPIFQRANAGFSYEYQLVNVPDY----EG 1248
Query: 676 QEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGAL 735
+ E + S Y N+ EA + + G ++I ++T Y GQ+ I + ++R
Sbjct: 1249 RGESTPSPWFYQNQGEAEYIVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCVP 1308
Query: 736 RQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ +V +VD FQG++ D+I+LS VR+
Sbjct: 1309 YPFIGPPSKVTTVDKFQGQQNDFILLSLVRT 1339
Score = 96 (38.9 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 394 SQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV---YHMAKQGQGQVLVCAPSNVAVDQL 450
+QV A+ S +Q ++++ GPPGTGKT T+ I+ YH + L+ SN A++ L
Sbjct: 869 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQR--TLIITHSNQALNDL 926
Query: 451 AEKI 454
EKI
Sbjct: 927 FEKI 930
>UNIPROTKB|F1PA16 [details] [associations]
symbol:AQR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901
GO:GO:0000398 OMA:RTKAVGH GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467
EMBL:AAEX03016041 Ensembl:ENSCAFT00000013319 Uniprot:F1PA16
Length = 1483
Score = 206 (77.6 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 75/254 (29%), Positives = 120/254 (47%)
Query: 530 QSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPECLIPLVL-----G---AK 577
+ A +I TC A R L F++ +L++E+ Q E E IPL+L G K
Sbjct: 1029 KEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLK 1088
Query: 578 QVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
+ +++GDH QL PVI + + + QSLF R V +G+ + L Q R SL N
Sbjct: 1089 RWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL-YN 1147
Query: 637 SFYE--GTLQNGVTINE--RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA 692
Y+ G L + + E ++G+ + + + N F G E + Y N EA
Sbjct: 1148 WRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF----QGVGESEPNPYFYQNLGEA 1203
Query: 693 ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752
V + G +I ++T Y GQ+ I + ++R + + +V +VD FQ
Sbjct: 1204 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQ 1263
Query: 753 GREKDYIILSCVRS 766
G++ DYI+LS VR+
Sbjct: 1264 GQQNDYILLSLVRT 1277
Score = 126 (49.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 370 VEVQMVRNTLPRRFGAP--GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV- 426
VE ++ N P + P + +Q+ A+++ +Q ++++ GPPGTGKT + I+
Sbjct: 779 VEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIIS 838
Query: 427 --YHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456
YH +Q + L+ PSN A++QL EKI A
Sbjct: 839 NIYHFPEQ---RTLIVTPSNPALNQLFEKIMA 867
>UNIPROTKB|Q8QHA5 [details] [associations]
symbol:dna2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:8355 "Xenopus laevis" [GO:0000076
"DNA replication checkpoint" evidence=ISS] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006264
"mitochondrial DNA replication" evidence=ISS] [GO:0006284
"base-excision repair" evidence=ISS] [GO:0016890 "site-specific
endodeoxyribonuclease activity, specific for altered base"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=ISS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISS] [GO:0045740 "positive regulation of DNA
replication" evidence=ISS] [GO:0005760 "gamma DNA polymerase
complex" evidence=ISS] InterPro:IPR026851 InterPro:IPR014808
Pfam:PF08696 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0016890 GO:GO:0045740 GO:GO:0000729 GO:GO:0017108
GO:GO:0000076 GO:GO:0043137 GO:GO:0043139 GO:GO:0043142
GO:GO:0006264 PANTHER:PTHR10887:SF14 CTD:1763 HOVERGEN:HBG081456
KO:K10742 EMBL:AF474372 RefSeq:NP_001079231.1 UniGene:Xl.17390
ProteinModelPortal:Q8QHA5 GeneID:378492 KEGG:xla:378492
Xenbase:XB-GENE-5829000 Uniprot:Q8QHA5
Length = 1053
Score = 241 (89.9 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 99/340 (29%), Positives = 160/340 (47%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGE 508
L + A G V+ L + + AV + + L +QV L +LH +Q+ +E E
Sbjct: 662 LVRILYACGFSVL-LTSYTHSAVDNILLKLK-KFQVGFLRLGRTQKLHPDVQEFSEE--E 717
Query: 509 LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC 568
+ + K K+L A E E+ S V+ TC+G P RF ++DE++Q ++P C
Sbjct: 718 ICKA--KSIKSLS-ALE-ELYNSQPVVATTCMGVNHPIFTRRRFDFCIVDEASQISQPIC 773
Query: 569 LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHP 628
L PL A + VLVGDH QL P++ +A G+++SLF+RL ++L VQYRM+
Sbjct: 774 LGPLFF-ADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAVVQLTVQYRMNS 832
Query: 629 SLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN-RPMFFYVQMGQEEISASGTSYL 687
+ + YEG L+ ++R S+ + +P+ + + ++ + + S L
Sbjct: 833 KIMALSNKLVYEGRLE---CASDRVSNAVV---QLPHIKTLLLELEFRESQESMWIKDVL 886
Query: 688 NRTEAA---NVEKIVTTFLRS-GVVPSQIGVITPYEGQRAYIVNYM--SRNGAL---RQQ 738
+ N EKI G + + I + + Y+ S G + RQQ
Sbjct: 887 EPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSDIGIIAPYRQQ 946
Query: 739 L-----Y------KEIEVASVDSFQGREKDYIILSCVRSN 767
L Y +EV +VD +QGR+K II+S VRSN
Sbjct: 947 LKMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSN 986
Score = 85 (35.0 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 55/195 (28%), Positives = 87/195 (44%)
Query: 277 LVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALEL-RASQGVPVDINHGFSVDFVW 335
L GD R+ SG+ A S G+ IK E + L R+ +P D+ F +D
Sbjct: 514 LASGD--RVVVSGEERFLAL-STGY-IKEVKDENITCILDRSLVKLPEDLL--FRLDHEE 567
Query: 336 KSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVE--VQMVRNTLP---RRFGAPGLPE 390
+ G + ++ +SVS + ++ VQ + + LP + A L
Sbjct: 568 GGGGLEFHLGNLSRL-MENSSVSEKLRKLIIDFSKPNFVQHLSSILPPDAKDIVASILRG 626
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ AVD
Sbjct: 627 LNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFS-VLLTSYTHSAVDN 685
Query: 450 LAEKISATGLKVVRL 464
+ K+ + +RL
Sbjct: 686 ILLKLKKFQVGFLRL 700
>WB|WBGene00001258 [details] [associations]
symbol:emb-4 species:6239 "Caenorhabditis elegans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR024860 InterPro:IPR026300
PIRSF:PIRSF038901 GO:GO:0009792 GO:GO:0040010 GO:GO:0010171
GO:GO:0040011 GO:GO:0005681 GO:GO:0000398 eggNOG:COG1112
HOGENOM:HOG000170551 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467 EMBL:AL132853
GeneID:180232 KEGG:cel:CELE_Y80D3A.2 CTD:180232
RefSeq:NP_001256831.1 ProteinModelPortal:Q9U1Q7 SMR:Q9U1Q7
PaxDb:Q9U1Q7 PRIDE:Q9U1Q7 EnsemblMetazoa:Y80D3A.2a.1
EnsemblMetazoa:Y80D3A.2a.2 UCSC:Y80D3A.2.1 WormBase:Y80D3A.2a
InParanoid:Q9U1Q7 NextBio:908508 ArrayExpress:Q9U1Q7 Uniprot:Q9U1Q7
Length = 1467
Score = 216 (81.1 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 75/259 (28%), Positives = 122/259 (47%)
Query: 524 TEREISQSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPECLIPLVL----- 574
TE + + A +I TC A R L FR+ ++++E+ Q E E IPL+L
Sbjct: 1026 TEYLLVKEAKIIAMTCTHAALRRNELVKLGFRYDNIVMEEAAQILEVETFIPLLLQNPQD 1085
Query: 575 G---AKQVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPIRLQVQYRMHPSL 630
G K+ +++GDH QL PV+ + + + + QSLF RLV L + ++L Q R +
Sbjct: 1086 GHNRLKRWIMIGDHHQLPPVVQNQAFQKYSNMEQSLFARLVRLSVPNVQLDRQGRARAQI 1145
Query: 631 SEFPSNSFYE-GTLQN--GVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYL 687
+E + G L + G+ + ++G FP+ + P F G E S Y
Sbjct: 1146 AELYQWRYNGLGNLPHVDGLPQFQNANAGFAFPFQFIDIPDF----NGHGETQPSPHFYQ 1201
Query: 688 NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVAS 747
N EA + T G +I ++T Y GQ I + R + +V++
Sbjct: 1202 NLGEAEYACALYTYMRILGYPAEKISILTTYNGQAQLIRDVFQRRCDTNPLIGMPAKVST 1261
Query: 748 VDSFQGREKDYIILSCVRS 766
VD +QG++ D+IILS V++
Sbjct: 1262 VDKYQGQQNDFIILSLVKT 1280
Score = 114 (45.2 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 394 SQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ-VLVCAPSNVAVDQLAE 452
SQV A+KS +Q ++++ GPPGTGKT + I+ ++ Q L+ SN A++QL E
Sbjct: 809 SQVEAIKSGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNWPNQRTLIVTHSNQALNQLFE 868
Query: 453 KISA 456
KI A
Sbjct: 869 KIIA 872
>FB|FBgn0035842 [details] [associations]
symbol:CG7504 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 GO:GO:0005875 EMBL:AE014296 GO:GO:0006200
GO:GO:0016887 Gene3D:2.60.200.20 SUPFAM:SSF49879 eggNOG:COG1112
KO:K10706 GeneTree:ENSGT00580000081652 RefSeq:NP_001137907.1
UniGene:Dm.31993 ProteinModelPortal:B7Z0D7 SMR:B7Z0D7 STRING:B7Z0D7
PaxDb:B7Z0D7 EnsemblMetazoa:FBtr0273367 GeneID:38904
KEGG:dme:Dmel_CG7504 FlyBase:FBgn0035842 OMA:NRSKSCY
OrthoDB:EOG4DV42G GenomeRNAi:38904 NextBio:810939 Bgee:B7Z0D7
Uniprot:B7Z0D7
Length = 1676
Score = 271 (100.5 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 102/333 (30%), Positives = 163/333 (48%)
Query: 460 KVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSEL---HKLQQLKDEQGELSSSDEKK 516
K+ R+ ++ E + +H L +++ L EK+ L + LQQL+ ++ +L +
Sbjct: 1290 KLQRVSKENAEILKK--QHNDLKDEIQQL--KEKTNLTSTYLLQQLQQKEKKLQLISNQL 1345
Query: 517 YKALKRATEREISQS----ADVICCTCVGAGDPRLANFR--FRQVLIDESTQATEPECLI 570
L + E EIS A++IC T +LAN+ F ++DE+TQ TEP L+
Sbjct: 1346 SPPLTQREEFEISHMCVTRANIICTTLSSC--VKLANYVDFFDICIVDEATQCTEPWTLL 1403
Query: 571 PLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV--------------LLGLK 616
P+ G +VLVGD QL V++ KKA GL+ S+F+R+ L+ K
Sbjct: 1404 PMRFGLTHMVLVGDMQQLPAVVLSKKAIDFGLSNSMFDRIQRSLQTQLDKPGSYHLMHTK 1463
Query: 617 PIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQ 676
+L QYRMHP + +P+ FYE L N R +S + P+ V N ++
Sbjct: 1464 LFKLSTQYRMHPEICRWPNQYFYEDQLINA-ECTARFASPL-IPYCVIN------LKYTC 1515
Query: 677 EEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQ---IGVITPYEGQRAYIVNYMSRNG 733
+ A S N EA V K++T + +PS+ G+I+PY+ Q Y ++ + +
Sbjct: 1516 DSNGAQNKSISNNEEARFVAKLLTEMDKH--MPSKRFSYGLISPYQNQ-CYALSQVIPS- 1571
Query: 734 ALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ I +VDS+QG EKD II+S R+
Sbjct: 1572 ------HMNITPQTVDSYQGLEKDVIIISNART 1598
>ZFIN|ZDB-GENE-040426-2419 [details] [associations]
symbol:helz "helicase with zinc finger"
species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR011539 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 ZFIN:ZDB-GENE-040426-2419 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 GO:GO:0003676
GO:GO:0004386 eggNOG:COG1112 EMBL:BC066461 IPI:IPI00500029
RefSeq:NP_998431.1 UniGene:Dr.35354 ProteinModelPortal:Q6NYU2
GeneID:406550 KEGG:dre:406550 CTD:9931 HOGENOM:HOG000231202
HOVERGEN:HBG031603 OrthoDB:EOG4NP72K NextBio:20818112
ArrayExpress:Q6NYU2 Uniprot:Q6NYU2
Length = 1860
Score = 205 (77.2 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 69/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L K +VVL GDH QL P + + A L SL +R
Sbjct: 781 FTHILLDEAAQAMECETIMPLALAVKSTRVVLAGDHMQLSPFVYSEFARERNLHVSLLDR 840
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S+ FYEG L + +Q DF
Sbjct: 841 LYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYEGKLM----ASGKQPPHKDF------ 890
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T+Y N E + + V + V IGV++PY
Sbjct: 891 YPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYA 950
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ E+ V V + QG++ + LS VR+ +++ K
Sbjct: 951 DQVFRI------RAELRKKRMSEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIK 1003
Score = 118 (46.6 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 29/65 (44%), Positives = 37/65 (56%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
P LNA Q A+ ++ + P LI GP GTGKT T A V H+ KQ + +VL+C S
Sbjct: 633 PRLNAKQKEAILAITTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPESRVLICTHS 692
Query: 444 NVAVD 448
N A D
Sbjct: 693 NSAAD 697
>UNIPROTKB|E2R8C1 [details] [associations]
symbol:HELZ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:9931 OMA:YRVALLY GeneTree:ENSGT00550000074391
EMBL:AAEX03006372 EMBL:AAEX03006373 EMBL:AAEX03006374
RefSeq:XP_862371.2 Ensembl:ENSCAFT00000018141 GeneID:490907
KEGG:cfa:490907 Uniprot:E2R8C1
Length = 1944
Score = 205 (77.2 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 69/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L K ++VL GDH QL P + + A L SL +R
Sbjct: 788 FTHILLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 847
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + DF
Sbjct: 848 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKDF------ 897
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 898 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 957
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 958 DQVFRI------RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 1010
Score = 117 (46.2 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
P LNA Q AV ++ +Q P LI GP GTGKT T A V H+ +Q + ++L+C S
Sbjct: 640 PRLNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILICTHS 699
Query: 444 NVAVD 448
N A D
Sbjct: 700 NSAAD 704
>UNIPROTKB|F1RSM3 [details] [associations]
symbol:HELZ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:9931 OMA:YRVALLY GeneTree:ENSGT00550000074391
EMBL:CU466377 EMBL:CU639426 EMBL:CU929837 RefSeq:XP_003131321.1
UniGene:Ssc.13421 Ensembl:ENSSSCT00000018802 GeneID:100524104
KEGG:ssc:100524104 Uniprot:F1RSM3
Length = 1944
Score = 205 (77.2 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 69/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L K ++VL GDH QL P + + A L SL +R
Sbjct: 788 FTHILLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 847
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + DF
Sbjct: 848 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKDF------ 897
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 898 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 957
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 958 DQVFRI------RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 1010
Score = 117 (46.2 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
P LNA Q AV ++ +Q P LI GP GTGKT T A V H+ +Q + ++L+C S
Sbjct: 640 PRLNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILICTHS 699
Query: 444 NVAVD 448
N A D
Sbjct: 700 NSAAD 704
>UNIPROTKB|F1NPB8 [details] [associations]
symbol:AQR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0000398 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 EMBL:AADN02003289 EMBL:AADN02003288
IPI:IPI00597734 Ensembl:ENSGALT00000015995 Uniprot:F1NPB8
Length = 1416
Score = 206 (77.6 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 75/270 (27%), Positives = 128/270 (47%)
Query: 515 KKYKALKRATERE---ISQSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPE 567
+ ++ L+ +R + + A +I TC A R L F++ +L++ES Q E E
Sbjct: 1021 RAFELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRHDLVELGFKYDNILMEESAQILEIE 1080
Query: 568 CLIPLVL-----G---AKQVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPI 618
IPL+L G K+ +++GDH QL PVI + + + QSLF R V +G+ +
Sbjct: 1081 TFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTV 1140
Query: 619 RLQVQYRMHPSLSEFPSNSFYE--GTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQ 676
L Q R SL N Y+ G L + + E +++ F + + + +G+
Sbjct: 1141 DLDAQGRARASLCNL-YNWRYKNLGNLPHVQLMPEFRTANAGFLYDFQLINVEDFNGVGE 1199
Query: 677 EEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALR 736
E + Y N EA V + G +I ++T Y GQ+ I + +++
Sbjct: 1200 SE--PNPYFYQNLGEAEYVVAVFMYMCLLGYPADRISILTTYNGQKHLIRDVINQRCGNN 1257
Query: 737 QQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ + +V +VD FQG++ DYI+LS VR+
Sbjct: 1258 PLIGRPNKVTTVDRFQGQQNDYILLSLVRT 1287
Score = 110 (43.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 370 VEVQMVRNTLPRRFGAP--GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY 427
VE ++ N P + P + +Q+ A+++ +Q ++++ GPPGTGKT + I+
Sbjct: 788 VEPHIIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIIS 847
Query: 428 HMAKQGQGQ-VLVCAPSNVAVDQLAEKISA 456
++ Q L+ SN A++QL EKI A
Sbjct: 848 NLYHNFPEQRTLIVTHSNQALNQLFEKIMA 877
>UNIPROTKB|Q9BXT6 [details] [associations]
symbol:MOV10L1 "Putative helicase Mov10l1" species:9606
"Homo sapiens" [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0007283 "spermatogenesis" evidence=IEP]
[GO:0005524 "ATP binding" evidence=TAS] [GO:0000287 "magnesium ion
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0007281 "germ cell development" evidence=IEP] [GO:0005622
"intracellular" evidence=IC] GO:GO:0007275 GO:GO:0005524
GO:GO:0000287 GO:GO:0007283 GO:GO:0003723 GO:GO:0005622
GO:GO:0007281 eggNOG:COG1112 GO:GO:0004004 EMBL:AL022328
EMBL:AF285604 EMBL:AK000033 EMBL:AK090740 EMBL:CR456466
EMBL:AL034546 EMBL:BC150137 EMBL:BC152539 EMBL:AL133068
IPI:IPI00005638 IPI:IPI00178391 IPI:IPI00215671 IPI:IPI00853536
PIR:T42668 RefSeq:NP_001157576.1 RefSeq:NP_001157577.1
RefSeq:NP_001157578.1 RefSeq:NP_061868.1 UniGene:Hs.62880
ProteinModelPortal:Q9BXT6 SMR:Q9BXT6 STRING:Q9BXT6
PhosphoSite:Q9BXT6 DMDM:22095856 PaxDb:Q9BXT6 PeptideAtlas:Q9BXT6
PRIDE:Q9BXT6 DNASU:54456 Ensembl:ENST00000262794
Ensembl:ENST00000354853 Ensembl:ENST00000395843
Ensembl:ENST00000395852 Ensembl:ENST00000395858
Ensembl:ENST00000545383 GeneID:54456 KEGG:hsa:54456 UCSC:uc003bjj.3
UCSC:uc003bjl.3 UCSC:uc003bjm.1 CTD:54456 GeneCards:GC22P050528
HGNC:HGNC:7201 HPA:HPA019034 MIM:605794 neXtProt:NX_Q9BXT6
PharmGKB:PA30909 HOVERGEN:HBG052382 InParanoid:Q9BXT6 KO:K13983
OMA:NMSGVTL OrthoDB:EOG49GKFV PhylomeDB:Q9BXT6 GenomeRNAi:54456
NextBio:56697 ArrayExpress:Q9BXT6 Bgee:Q9BXT6 CleanEx:HS_MOV10L1
Genevestigator:Q9BXT6 GermOnline:ENSG00000073146 InterPro:IPR026125
PANTHER:PTHR10887:SF6 Uniprot:Q9BXT6
Length = 1211
Score = 188 (71.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 75/222 (33%), Positives = 102/222 (45%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV----------LLGL----KPI---RL 620
Q+VL GD QLGPVI + A GL S ERL+ G P+ +L
Sbjct: 909 QIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKL 968
Query: 621 QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR--PMFFYVQMGQE 677
YR H +L PS FY L+ V + + + W +P + P+ F+ G E
Sbjct: 969 VKNYRSHEALLMLPSRLFYHRELE--VCADPTVVTSL-LGWEKLPKKGFPLIFHGVRGSE 1025
Query: 678 EISASGTSYLNRTEAANVEK---IVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGA 734
S+ N EA V + ++ + S V S IGVITPY Q I + RN
Sbjct: 1026 AREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKI-RILLRNVD 1084
Query: 735 LRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH--QRNRY 774
L +I+V SV+ FQG+E II+S VRSNE + +RY
Sbjct: 1085 LM-----DIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRY 1121
Score = 142 (55.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 38/84 (45%), Positives = 47/84 (55%)
Query: 534 VICCTCVGAGDPRLANFR---FRQVLIDESTQATEPECLIPLVLGAK---QVVLVGDHCQ 587
+I TC +G R F V +DE+ QA+EPECLIPL L + Q+VL GD Q
Sbjct: 859 IIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQ 918
Query: 588 LGPVIMCKKAARAGLAQSLFERLV 611
LGPVI + A GL S ERL+
Sbjct: 919 LGPVIKSRLAMAYGLNVSFLERLM 942
Score = 127 (49.8 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 33/66 (50%), Positives = 39/66 (59%)
Query: 389 PELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVT--SAAIVYHMAKQGQGQVLVCAP 442
P LN +Q AVK +L RP+ I GPPGTGKTVT A + H A ++LVCAP
Sbjct: 743 PVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALP-DSRILVCAP 801
Query: 443 SNVAVD 448
SN A D
Sbjct: 802 SNSAAD 807
>MGI|MGI:1925705 [details] [associations]
symbol:Helz "helicase with zinc finger domain" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:1925705
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 GO:GO:0004386 eggNOG:COG1112 CTD:9931
HOGENOM:HOG000231202 HOVERGEN:HBG031603 EMBL:AB093209 EMBL:AL645947
EMBL:BC021818 EMBL:BC076626 EMBL:BC130582 EMBL:AK033094
IPI:IPI00453654 IPI:IPI00649664 IPI:IPI00915056 RefSeq:NP_938040.1
UniGene:Mm.272047 UniGene:Mm.394603 UniGene:Mm.490425
ProteinModelPortal:Q6DFV5 SMR:Q6DFV5 IntAct:Q6DFV5 STRING:Q6DFV5
PhosphoSite:Q6DFV5 PaxDb:Q6DFV5 PRIDE:Q6DFV5
Ensembl:ENSMUST00000075012 Ensembl:ENSMUST00000106746 GeneID:78455
KEGG:mmu:78455 UCSC:uc007mav.1 GeneTree:ENSGT00550000074391
InParanoid:Q8BZZ6 NextBio:348914 Bgee:Q6DFV5 Genevestigator:Q6DFV5
Uniprot:Q6DFV5
Length = 1964
Score = 206 (77.6 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 70/239 (29%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F VL+DE+ QA E E ++PL L K ++VL GDH QL P + + A L SL +R
Sbjct: 788 FTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 847
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + DF
Sbjct: 848 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKDF------ 897
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 898 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 957
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 958 DQVFRI------RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 1010
Score = 113 (44.8 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
P LNA Q AV ++ +Q P LI GP GTGKT T A H+ +Q + ++L+C S
Sbjct: 640 PRLNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQETRILICTHS 699
Query: 444 NVAVD 448
N A D
Sbjct: 700 NSAAD 704
>FB|FBgn0051368 [details] [associations]
symbol:CG31368 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IC]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 EMBL:AE014297 GO:GO:0016787
GO:GO:0071011 GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 RefSeq:NP_996198.2 UniGene:Dm.10009
ProteinModelPortal:Q7KSN8 SMR:Q7KSN8 PaxDb:Q7KSN8
EnsemblMetazoa:FBtr0301042 GeneID:41437 KEGG:dme:Dmel_CG31368
UCSC:CG31368-RB FlyBase:FBgn0051368 InParanoid:Q7KSN8
OrthoDB:EOG43XSJ9 PhylomeDB:Q7KSN8 GenomeRNAi:41437 NextBio:823855
ArrayExpress:Q7KSN8 Bgee:Q7KSN8 Uniprot:Q7KSN8
Length = 1486
Score = 199 (75.1 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 78/272 (28%), Positives = 125/272 (45%)
Query: 515 KKYKALKRATERE---ISQSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPE 567
+ ++ L+ +R + + A +I TC A R L N FR+ +L++ES Q E E
Sbjct: 1028 RAFELLRTGLDRSKYLLVKEAKIIAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIE 1087
Query: 568 CLIPLVL-----GA---KQVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPI 618
IPL+L G K+ +++GDH QL PVI + + + QSLF RLV LG+ +
Sbjct: 1088 TFIPLLLQNPLDGLNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTV 1147
Query: 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQM-GQE 677
L Q R S+ + + L++ I ER P V + + G
Sbjct: 1148 DLDGQGRARASICSLYKWRYKK--LEDLQHIFERDEYKQANPGFVHDYQLINVEDFKGVG 1205
Query: 678 EISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYI---VNYMSRNGA 734
E + Y N EA + + G ++I ++T Y GQ+ I +N N
Sbjct: 1206 ESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQKHLIRDVINARCGNNP 1265
Query: 735 LRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
L +K + +VD +QG++ DYI++S VR+
Sbjct: 1266 LIGWPHK---ITTVDKYQGQQNDYILISLVRT 1294
Score = 117 (46.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 34/118 (28%), Positives = 66/118 (55%)
Query: 394 SQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ-VLVCAPSNVAVDQLAE 452
+QV A+++ +Q ++L+ GPPGTGKT + I+ ++ Q L+ SN A++QL E
Sbjct: 818 TQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNIYHNHPNQRTLIVTHSNQALNQLFE 877
Query: 453 KISATGLK---VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQG 507
KI A + ++RL EA+ + ++ + + +V ++ L ++Q+L++ G
Sbjct: 878 KIMALDIDERHLLRL-GHGEEALETEKDY-SRYGRVNYVLAKRMDLLSQVQKLQEALG 933
>UNIPROTKB|P42694 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 GO:GO:0004386 eggNOG:COG1112 HOVERGEN:HBG031603
OrthoDB:EOG4NP72K EMBL:D29677 EMBL:AC005544 EMBL:AC007448
IPI:IPI00000897 UniGene:Hs.370140 UniGene:Hs.569824
ProteinModelPortal:P42694 SMR:P42694 IntAct:P42694 STRING:P42694
PhosphoSite:P42694 DMDM:221222452 PaxDb:P42694 PRIDE:P42694
Ensembl:ENST00000358691 UCSC:uc002jfx.4 GeneCards:GC17M065066
HGNC:HGNC:16878 HPA:HPA028276 MIM:606699 neXtProt:NX_P42694
InParanoid:P42694 OMA:YRVALLY ChiTaRS:HELZ ArrayExpress:P42694
Bgee:P42694 CleanEx:HS_HELZ Genevestigator:P42694
GermOnline:ENSG00000198265 Uniprot:P42694
Length = 1942
Score = 201 (75.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 68/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L + ++VL GDH QL P + + A L SL +R
Sbjct: 788 FTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 847
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + DF
Sbjct: 848 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKDF------ 897
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 898 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 957
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 958 DQVFRI------RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 1010
Score = 117 (46.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
P LNA Q AV ++ +Q P LI GP GTGKT T A V H+ +Q + ++L+C S
Sbjct: 640 PRLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILICTHS 699
Query: 444 NVAVD 448
N A D
Sbjct: 700 NSAAD 704
>RGD|1306223 [details] [associations]
symbol:Aqr "aquarius homolog (mouse)" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901 RGD:1306223
GO:GO:0005681 GO:GO:0000398 GO:GO:0097157 PANTHER:PTHR10887:SF5
IPI:IPI00389267 ProteinModelPortal:D3ZZP0
Ensembl:ENSRNOT00000011917 UCSC:RGD:1306223 ArrayExpress:D3ZZP0
Uniprot:D3ZZP0
Length = 1353
Score = 205 (77.2 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 75/254 (29%), Positives = 120/254 (47%)
Query: 530 QSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPECLIPLVL-----G---AK 577
+ A +I TC A R L F++ +L++E+ Q E E IPL+L G K
Sbjct: 1030 KEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLK 1089
Query: 578 QVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
+ +++GDH QL PVI + + + QSLF R V +G+ + L Q R SL N
Sbjct: 1090 RWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL-YN 1148
Query: 637 SFYE--GTLQNGVTINE--RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA 692
Y+ G L + + E ++G+ + + + N F G E + Y N EA
Sbjct: 1149 WRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF----QGVGESEPNPYFYQNLGEA 1204
Query: 693 ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752
V + G +I ++T Y GQ+ I + ++R + + +V +VD FQ
Sbjct: 1205 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQ 1264
Query: 753 GREKDYIILSCVRS 766
G++ DYI+LS VR+
Sbjct: 1265 GQQNDYILLSLVRT 1278
Score = 109 (43.4 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 370 VEVQMVRNTLPRRFGAP--GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY 427
VE ++ N P + P + +Q+ A+++ +Q ++++ GPPGTGKT + I+
Sbjct: 779 VEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIIS 838
Query: 428 HMAKQGQGQ-VLVCAPSNVAVDQLAEKISA 456
++ Q L+ SN A++QL EKI A
Sbjct: 839 NIYHNFPEQRTLIVTHSNQALNQLFEKIMA 868
>UNIPROTKB|F1MUW2 [details] [associations]
symbol:F1MUW2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0000398 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 EMBL:DAAA02028420 EMBL:DAAA02028416
EMBL:DAAA02028417 EMBL:DAAA02028418 EMBL:DAAA02028419
IPI:IPI00852511 Ensembl:ENSBTAT00000016895 Uniprot:F1MUW2
Length = 1466
Score = 205 (77.2 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 75/254 (29%), Positives = 120/254 (47%)
Query: 530 QSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPECLIPLVL-----G---AK 577
+ A +I TC A R L F++ +L++E+ Q E E IPL+L G K
Sbjct: 1012 KEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLK 1071
Query: 578 QVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
+ +++GDH QL PVI + + + QSLF R V +G+ + L Q R SL N
Sbjct: 1072 RWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL-YN 1130
Query: 637 SFYE--GTLQNGVTINE--RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA 692
Y+ G L + + E ++G+ + + + N F G E + Y N EA
Sbjct: 1131 WRYKNLGNLPHVQLLLEFSTANAGLLYDFQLINVEDF----QGVGESEPNPYFYQNLGEA 1186
Query: 693 ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752
V + G +I ++T Y GQ+ I + ++R + + +V +VD FQ
Sbjct: 1187 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQ 1246
Query: 753 GREKDYIILSCVRS 766
G++ DYI+LS VR+
Sbjct: 1247 GQQNDYILLSLVRT 1260
Score = 109 (43.4 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 370 VEVQMVRNTLPRRFGAP--GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY 427
VE ++ N P + P + +Q+ A+++ +Q ++++ GPPGTGKT + I+
Sbjct: 762 VEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIIS 821
Query: 428 HMAKQGQGQ-VLVCAPSNVAVDQLAEKISA 456
++ Q L+ SN A++QL EKI A
Sbjct: 822 NIYHNFPEQRTLIVTHSNQALNQLFEKIMA 851
Score = 39 (18.8 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 532 ADVICCTCV 540
+D+ICCT +
Sbjct: 380 SDIICCTTI 388
>MGI|MGI:1276102 [details] [associations]
symbol:Aqr "aquarius" species:10090 "Mus musculus"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 MGI:MGI:1276102 GO:GO:0000398
CTD:9716 eggNOG:COG1112 HOGENOM:HOG000170551 HOVERGEN:HBG080430
KO:K12874 OMA:RTKAVGH OrthoDB:EOG4ZPDTF GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 EMBL:AK122310 EMBL:AK145547 EMBL:AK151716
EMBL:BC042479 EMBL:U90333 IPI:IPI00330263 RefSeq:NP_033832.2
UniGene:Mm.2545 ProteinModelPortal:Q8CFQ3 SMR:Q8CFQ3
PhosphoSite:Q8CFQ3 PaxDb:Q8CFQ3 PRIDE:Q8CFQ3
Ensembl:ENSMUST00000043160 GeneID:11834 KEGG:mmu:11834
GeneTree:ENSGT00700000104467 InParanoid:Q8CFQ3 NextBio:279759
Bgee:Q8CFQ3 CleanEx:MM_AQR Genevestigator:Q8CFQ3
GermOnline:ENSMUSG00000040383 Uniprot:Q8CFQ3
Length = 1481
Score = 205 (77.2 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 75/254 (29%), Positives = 120/254 (47%)
Query: 530 QSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPECLIPLVL-----G---AK 577
+ A +I TC A R L F++ +L++E+ Q E E IPL+L G K
Sbjct: 1034 KEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLK 1093
Query: 578 QVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
+ +++GDH QL PVI + + + QSLF R V +G+ + L Q R SL N
Sbjct: 1094 RWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL-YN 1152
Query: 637 SFYE--GTLQNGVTINE--RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA 692
Y+ G L + + E ++G+ + + + N F G E + Y N EA
Sbjct: 1153 WRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF----QGVGESEPNPYFYQNLGEA 1208
Query: 693 ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752
V + G +I ++T Y GQ+ I + ++R + + +V +VD FQ
Sbjct: 1209 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQ 1268
Query: 753 GREKDYIILSCVRS 766
G++ DYI+LS VR+
Sbjct: 1269 GQQNDYILLSLVRT 1282
Score = 109 (43.4 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 370 VEVQMVRNTLPRRFGAP--GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY 427
VE ++ N P + P + +Q+ A+++ +Q ++++ GPPGTGKT + I+
Sbjct: 779 VEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIIS 838
Query: 428 HMAKQGQGQ-VLVCAPSNVAVDQLAEKISA 456
++ Q L+ SN A++QL EKI A
Sbjct: 839 NIYHNFPEQRTLIVTHSNQALNQLFEKIMA 868
>UNIPROTKB|O60306 [details] [associations]
symbol:AQR "Intron-binding protein aquarius" species:9606
"Homo sapiens" [GO:0097157 "pre-mRNA intronic binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] InterPro:IPR024860 InterPro:IPR026300
PIRSF:PIRSF038901 GO:GO:0000398 EMBL:AB011132 EMBL:EF553519
EMBL:BC036913 EMBL:BC070379 EMBL:BC108262 EMBL:BC127111
EMBL:BC127112 IPI:IPI00796835 PIR:T00333 RefSeq:NP_055506.1
UniGene:Hs.510958 ProteinModelPortal:O60306 SMR:O60306
IntAct:O60306 STRING:O60306 PhosphoSite:O60306 PaxDb:O60306
PRIDE:O60306 Ensembl:ENST00000156471 GeneID:9716 KEGG:hsa:9716
UCSC:uc001ziv.3 CTD:9716 GeneCards:GC15M035147 HGNC:HGNC:29513
MIM:610548 neXtProt:NX_O60306 PharmGKB:PA134869224 eggNOG:COG1112
HOGENOM:HOG000170551 HOVERGEN:HBG080430 InParanoid:O60306 KO:K12874
OMA:RTKAVGH OrthoDB:EOG4ZPDTF ChiTaRS:AQR GenomeRNAi:9716
NextBio:36525 Bgee:O60306 CleanEx:HS_AQR Genevestigator:O60306
GermOnline:ENSG00000021776 GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 Uniprot:O60306
Length = 1485
Score = 205 (77.2 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 75/254 (29%), Positives = 120/254 (47%)
Query: 530 QSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPECLIPLVL-----G---AK 577
+ A +I TC A R L F++ +L++E+ Q E E IPL+L G K
Sbjct: 1030 KEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLK 1089
Query: 578 QVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
+ +++GDH QL PVI + + + QSLF R V +G+ + L Q R SL N
Sbjct: 1090 RWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL-YN 1148
Query: 637 SFYE--GTLQNGVTINE--RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA 692
Y+ G L + + E ++G+ + + + N F G E + Y N EA
Sbjct: 1149 WRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF----QGVGESEPNPYFYQNLGEA 1204
Query: 693 ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752
V + G +I ++T Y GQ+ I + ++R + + +V +VD FQ
Sbjct: 1205 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQ 1264
Query: 753 GREKDYIILSCVRS 766
G++ DYI+LS VR+
Sbjct: 1265 GQQNDYILLSLVRT 1278
Score = 109 (43.4 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 370 VEVQMVRNTLPRRFGAP--GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY 427
VE ++ N P + P + +Q+ A+++ +Q ++++ GPPGTGKT + I+
Sbjct: 779 VEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIIS 838
Query: 428 HMAKQGQGQ-VLVCAPSNVAVDQLAEKISA 456
++ Q L+ SN A++QL EKI A
Sbjct: 839 NIYHNFPEQRTLIVTHSNQALNQLFEKIMA 868
>FB|FBgn0030170 [details] [associations]
symbol:CG2990 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] [GO:0043142 "single-stranded
DNA-dependent ATPase activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 EMBL:AE014298 GO:GO:0006200
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
KO:K10742 GeneTree:ENSGT00550000074852 OMA:EHESLCH
FlyBase:FBgn0030170 EMBL:BT088860 RefSeq:NP_727386.1
UniGene:Dm.17561 SMR:Q8IRL9 STRING:Q8IRL9
EnsemblMetazoa:FBtr0071415 GeneID:31934 KEGG:dme:Dmel_CG2990
UCSC:CG2990-RB InParanoid:Q8IRL9 GenomeRNAi:31934 NextBio:776017
Uniprot:Q8IRL9
Length = 1100
Score = 192 (72.6 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 56/185 (30%), Positives = 98/185 (52%)
Query: 460 KVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKA 519
K V + A++ AV + + L L + + + S +HK QL++ E + D K +
Sbjct: 681 KSVLITAQTHSAVDNLIMRL-LPFGLPMMRLGSGSRIHK--QLEEISEERLTKDCKTVEE 737
Query: 520 LKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQV 579
L++A + Q + ++ TC+G G P +F ++DE+TQ +P L PL+ +K
Sbjct: 738 LEKA----LGQPS-IVGVTCLGCGHPLFQRRQFDYCIVDEATQVLQPTVLRPLIHCSK-F 791
Query: 580 VLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFY 639
VLVGD QL P++ K+A + G ++LF+RL + L +QYRM+ +++ + Y
Sbjct: 792 VLVGDPEQLPPIVRSKEARQRGADETLFQRLDSEKATAV-LSLQYRMNKTITRLANELTY 850
Query: 640 EGTLQ 644
G L+
Sbjct: 851 GGDLK 855
Score = 119 (46.9 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 684 TSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEI 743
+ Y N EA V ++ L+SG S+IGVI PY Q V + L +L ++
Sbjct: 940 SKYTNYCEAGIVMHLLRYLLKSGYEASRIGVIAPYRAQ----VELFKK---LASKLDTDL 992
Query: 744 EVASVDSFQGREKDYIILSCVRS 766
E +VD FQGR+K+ II SC ++
Sbjct: 993 ECNTVDQFQGRDKNLIIYSCSKT 1015
Score = 116 (45.9 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 38/113 (33%), Positives = 60/113 (53%)
Query: 384 GAPGLPELN-ASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442
GAP L LN Q A++++ LI+G PGTGKT T A+V + G+ VL+ A
Sbjct: 630 GAPILLNLNKVQQNAALRALTTSSHLLIKGLPGTGKTQTLVALVRLLHLLGKS-VLITAQ 688
Query: 443 SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSE 495
++ AVD L ++ GL ++RL + SR + +E ++ + T E+ E
Sbjct: 689 THSAVDNLIMRLLPFGLPMMRLGSGSR--IHKQLEEISEERLTKDCKTVEELE 739
>UNIPROTKB|I6L9H4 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC005544 EMBL:AC007448
UniGene:Hs.370140 UniGene:Hs.569824 HGNC:HGNC:16878 ChiTaRS:HELZ
EMBL:BC094881 ProteinModelPortal:I6L9H4 Ensembl:ENST00000579953
Uniprot:I6L9H4
Length = 1163
Score = 201 (75.8 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 68/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L + ++VL GDH QL P + + A L SL +R
Sbjct: 789 FTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 848
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + DF
Sbjct: 849 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKDF------ 898
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 899 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 958
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 959 DQVFRI------RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 1011
Score = 110 (43.8 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 29/66 (43%), Positives = 38/66 (57%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ-GQVLVCAP 442
P LNA Q AV ++ +Q P LI GP GTGKT T A V H+ +Q + ++L+C
Sbjct: 640 PRLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTH 699
Query: 443 SNVAVD 448
SN A D
Sbjct: 700 SNSAAD 705
>ZFIN|ZDB-GENE-040426-1189 [details] [associations]
symbol:aqr "aquarius homolog (mouse)" species:7955
"Danio rerio" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 ZFIN:ZDB-GENE-040426-1189
GO:GO:0005681 GO:GO:0000398 CTD:9716 HOGENOM:HOG000170551
HOVERGEN:HBG080430 KO:K12874 GO:GO:0097157 PANTHER:PTHR10887:SF5
EMBL:BC160661 IPI:IPI00861759 RefSeq:NP_956758.2 UniGene:Dr.17308
ProteinModelPortal:B1H1M2 DNASU:393436 GeneID:393436
KEGG:dre:393436 eggNOG:NOG272077 NextBio:20814473
ArrayExpress:B1H1M2 Uniprot:B1H1M2
Length = 1525
Score = 201 (75.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 78/271 (28%), Positives = 126/271 (46%)
Query: 515 KKYKALKRATERE---ISQSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPE 567
+ ++ L+ +R + + A +I TC A R L F++ +L++E+ Q E E
Sbjct: 1011 RAFELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRHDLVELGFKYDNILMEEAAQILEIE 1070
Query: 568 CLIPLVL-----G---AKQVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPI 618
IPL+L G K+ +++GDH QL PVI + + + QSLF R V LG+ +
Sbjct: 1071 TFIPLLLQNPEDGYSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRLGVPTV 1130
Query: 619 RLQVQYRMHPSLSEFPSNSFYE-GTLQNGVTINERQSS--GIDFPWPVPNRPMFFYVQMG 675
L Q R SL + + + G L + E ++ G F + + N F V G
Sbjct: 1131 DLDAQGRARASLCNLYNWRYKQLGNLPHVQLQPEFRTPNPGFTFDFQLINVEDFNGV--G 1188
Query: 676 QEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGAL 735
+ E + Y N EA + G +I ++T Y GQ+ I + + + A
Sbjct: 1189 ESE--PNPYFYQNLAEAEYSVALYMYMRLLGYPAERISILTTYNGQKHLIRDVIHQRCAS 1246
Query: 736 RQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ +V +VD FQG++ DYIILS VR+
Sbjct: 1247 NSFFGQPSKVTTVDRFQGQQNDYIILSLVRT 1277
Score = 112 (44.5 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 41/154 (26%), Positives = 77/154 (50%)
Query: 370 VEVQMVRNTLPRRFGAP--GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY 427
VE + N P + P + +Q+ A+++ +Q ++++ GPPGTGKT + I+
Sbjct: 778 VEPHVTPNRGPYPYNQPKRNTIQFTPTQIEAIRAGMQPGLTMVVGPPGTGKTNVAVQIIS 837
Query: 428 HMAKQGQGQ-VLVCAPSNVAVDQLAEKISATGLK---VVRLCAKSREAVSSP--VEHLTL 481
++ Q L+ SN A++QL EKI A + ++RL E + + +
Sbjct: 838 NLYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRV 897
Query: 482 HYQV-RHLDTSEKSELHKLQQLKDEQGELSSSDE 514
+Y + R L+ + E+ +LQ+ D G++S + E
Sbjct: 898 NYVLSRRLELLQ--EVARLQESLDVPGDVSYTCE 929
>RGD|1307049 [details] [associations]
symbol:Helz "helicase with zinc finger" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 RGD:1307049
GO:GO:0008270 GO:GO:0003676 CTD:9931 OrthoDB:EOG4NP72K OMA:YRVALLY
GeneTree:ENSGT00550000074391 IPI:IPI00364329 RefSeq:NP_001099318.2
ProteinModelPortal:D4ADZ6 Ensembl:ENSRNOT00000030300 GeneID:287773
KEGG:rno:287773 Uniprot:D4ADZ6
Length = 1964
Score = 205 (77.2 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 69/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L K ++VL GDH QL P + + A L SL +R
Sbjct: 789 FTHILLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 848
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + DF
Sbjct: 849 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKDF------ 898
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 899 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 958
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 959 DQVFRI------RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 1011
Score = 110 (43.8 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 29/66 (43%), Positives = 38/66 (57%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ-GQVLVCAP 442
P LNA Q AV ++ +Q P LI GP GTGKT T A V H+ +Q + ++L+C
Sbjct: 640 PRLNAKQKEAVLAITTPLCIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTH 699
Query: 443 SNVAVD 448
SN A D
Sbjct: 700 SNSAAD 705
>UNIPROTKB|F1SRZ7 [details] [associations]
symbol:F1SRZ7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR024860
GO:GO:0005681 GO:GO:0000398 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467 EMBL:CU633172
Ensembl:ENSSSCT00000005301 Uniprot:F1SRZ7
Length = 1206
Score = 215 (80.7 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 78/264 (29%), Positives = 124/264 (46%)
Query: 530 QSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATEPECLIPLVL-----G---AK 577
+ A +I TC A R L F++ +L++E+ Q E E IPL+L G K
Sbjct: 947 KEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLK 1006
Query: 578 QVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
+ +++GDH QL PVI + + + QSLF R V +G+ + L Q R SL N
Sbjct: 1007 RWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL-YN 1065
Query: 637 SFYE--GTLQNGVTINE--RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA 692
Y+ G L + + E ++G+ + + + N F G E + Y N EA
Sbjct: 1066 WRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF----QGVGESEPNPYFYQNLGEA 1121
Query: 693 ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752
V + G +I ++T Y GQ+ I + ++R + + +V +VD FQ
Sbjct: 1122 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQ 1181
Query: 753 GREKDYIILSCVRSNEHQRNRYVK 776
G++ DYI+LS VR+ RYV+
Sbjct: 1182 GQQNDYILLSLVRTRAVGHLRYVR 1205
Score = 98 (39.6 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 370 VEVQMVRNTLPRRFGAP--GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY 427
VE ++ N P + P + +Q+ A+++ +Q +++ GPPGTGKT + I+
Sbjct: 696 VEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMGVGPPGTGKTDVAVPIIS 755
Query: 428 HMAKQGQGQ-VLVCAPSNVAVDQLAEKISA 456
++ + Q + SN A++QL EKI A
Sbjct: 756 NIYRNFPEQRTRIVTRSNHALNQLFEKIMA 785
Score = 43 (20.2 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 215 VFLLGFISAKT-ESVVVLLCREPCLNMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKE 271
V G +S+ T V LC P L +++ + + +N + + VFP E
Sbjct: 298 VKFFGPLSSNTLHQVASYLCLLPTLPKAEDTTFDKEFLLELLVNINALCILHVVFPPE 355
>RGD|1565575 [details] [associations]
symbol:Setx "senataxin" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=ISO] [GO:0007623 "circadian rhythm"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR026121 RGD:1565575 GO:GO:0006302 PANTHER:PTHR10887:SF15
IPI:IPI00560336 Ensembl:ENSRNOT00000018281 UCSC:RGD:1565575
ArrayExpress:F1M0E2 Uniprot:F1M0E2
Length = 380
Score = 207 (77.9 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 72/212 (33%), Positives = 102/212 (48%)
Query: 536 CCTCVGAGDPRLAN-FR------FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQL 588
CCT +G L + FR F V++DE+ Q+ E E L PL+ ++VLVGD QL
Sbjct: 1 CCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLVLVGDPKQL 60
Query: 589 GPVIMCKKAARAGLAQSLFERLV----------LLGLKPI-RLQVQYRMHPSLSEFPSNS 637
P ++ KA G QS+ R ++G P+ +L +QYRMHP + FPSN
Sbjct: 61 PPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNY 120
Query: 638 FYEGTLQ-NGVTINERQSSGIDFPWPVPNRP-MFFYVQMGQEEISASGTSYLNRTEAANV 695
Y L+ N +T R SS WP +P + F V G E+ SY+N E V
Sbjct: 121 VYNKNLKTNRLTETIRCSS----EWPF--QPYLVFDVGDGSEQ--RDNDSYINVQEIKLV 172
Query: 696 EKIVTTFL--RSGVVPSQIGVITPYEGQRAYI 725
+I+ R + IG+IT Y+ Q+ I
Sbjct: 173 MEIIKLIKEKRKDISFRNIGIITHYKAQKTMI 204
Score = 83 (34.3 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 744 EVASVDSFQGREKDYIILSCVRSNEHQ 770
EV +VD+FQGR+KD II++CVR++ Q
Sbjct: 274 EVDTVDAFQGRQKDCIIVTCVRASAVQ 300
>ZFIN|ZDB-GENE-030131-9089 [details] [associations]
symbol:mov10b.1 "Moloney leukemia virus 10,
homolog, b.1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0035279 "mRNA cleavage involved in gene
silencing by miRNA" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR003593
SMART:SM00382 ZFIN:ZDB-GENE-030131-9089 GO:GO:0005524 GO:GO:0003723
GO:GO:0004386 GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:BX323059 EMBL:BC171375
IPI:IPI00801311 RefSeq:NP_001037807.2 UniGene:Dr.74181
ProteinModelPortal:Q1LXK4 STRING:Q1LXK4 Ensembl:ENSDART00000086946
GeneID:556024 KEGG:dre:556024 CTD:556024 HOGENOM:HOG000239755
InParanoid:Q1LXK4 OMA:NLVGECY OrthoDB:EOG4SXNC4 NextBio:20881283
Bgee:Q1LXK4 Uniprot:Q1LXK4
Length = 1013
Score = 175 (66.7 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 67/239 (28%), Positives = 114/239 (47%)
Query: 534 VICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK--QVVLVGDHC 586
++ CT V AG F F + +DE+ A EPE +I + +L A+ Q+VL GD
Sbjct: 645 IVVCTLVTAGRLVSGGFPVGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPK 704
Query: 587 QLGPVIMCKKAARAGLAQSLFERLVL---LGLKP---------IRLQVQYRMHPSLSEFP 634
QLGP++ A + GL SL ERL+ L K +L YR HPS+ + P
Sbjct: 705 QLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKVP 764
Query: 635 SNSFYEGTLQNGVT-INERQSSGIDFPWP-VPNR--PMFFYVQMGQEEISASGTSYLNRT 690
+ FY+ L+ I+ RQ W +P R P+ F+ +G++E ++ S+ N +
Sbjct: 765 NELFYDNELKACADEISSRQYC----TWEHLPKRGFPVIFHGVVGKDERESTSPSFFNTS 820
Query: 691 EAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQ--QLYKEIEVAS 747
E ++KI+ + + ++ G+ I Y + +RQ ++++E++ S
Sbjct: 821 E---IDKIMDYLKKLLLTQAKKGIAKISPKDIGIIAPYRKQVEKIRQAIKIHRELKSLS 876
Score = 173 (66.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVT-INERQSSGIDFPWP-VPNR--PMFFYVQM 674
+L YR HPS+ + P+ FY+ L+ I+ RQ W +P R P+ F+ +
Sbjct: 749 KLLQNYRSHPSILKVPNELFYDNELKACADEISSRQYC----TWEHLPKRGFPVIFHGVV 804
Query: 675 GQEEISASGTSYLNRTEAANV----EKIVTTFLRSGVV---PSQIGVITPYEGQRAYIVN 727
G++E ++ S+ N +E + +K++ T + G+ P IG+I PY Q I
Sbjct: 805 GKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPKDIGIIAPYRKQVEKIRQ 864
Query: 728 YMSRNGALRQQL-YKEIEVASVDSFQGREKDYIILSCVRSN-EH 769
+ + L+ +E++V SV+ FQG+E+ II+S VRS+ EH
Sbjct: 865 AIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEH 908
Score = 132 (51.5 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 390 ELNASQVFAVKSVL---QRPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q AV +++ +P L+ GPPGTGKTVT + + K G ++L CAPSN
Sbjct: 524 EKNPEQKTAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSN 583
Query: 445 VAVDQLAEKISAT----GLKVVRLCAKSREAVSSP 475
A DQL EK+ + + R+ A SR P
Sbjct: 584 SAADQLGEKLITSQHVDARNIYRIYASSRNPKEIP 618
>UNIPROTKB|Q81NI5 [details] [associations]
symbol:BAS2982 "Conserved domain protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR RefSeq:NP_845517.1 RefSeq:YP_019848.1
RefSeq:YP_029239.1 ProteinModelPortal:Q81NI5 IntAct:Q81NI5
DNASU:1087476 EnsemblBacteria:EBBACT00000012886
EnsemblBacteria:EBBACT00000015522 EnsemblBacteria:EBBACT00000022854
GeneID:1087476 GeneID:2817117 GeneID:2850799 KEGG:ban:BA_3207
KEGG:bar:GBAA_3207 KEGG:bat:BAS2982 HOGENOM:HOG000093512
OMA:EVSMAYV ProtClustDB:CLSK916959
BioCyc:BANT260799:GJAJ-3044-MONOMER
BioCyc:BANT261594:GJ7F-3148-MONOMER Uniprot:Q81NI5
Length = 759
Score = 213 (80.0 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 83/322 (25%), Positives = 144/322 (44%)
Query: 464 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRA 523
L +K E + L+ + + EK +K ++ + SD +K +A +
Sbjct: 246 LASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQRAKIKE 305
Query: 524 TEREISQSADVICCTCVGAG-DPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLV 582
E+E ++A VI T D + F V++DE + A P+ + LG K++V+
Sbjct: 306 VEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLG-KRIVVC 364
Query: 583 GDHCQLGPVIMCK-KAARAGLAQSLF------ERLVLLGLKP--IRLQVQYRMHPSLSEF 633
GD QL P+ M + R L + +F E + P LQ Q RMH +S+F
Sbjct: 365 GDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHADISKF 424
Query: 634 PSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEI--SASGTSYLNRTE 691
++ Y+ + + +++ER+ P+ +F QMG + +ASG+ + N
Sbjct: 425 TNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRF-NIMS 483
Query: 692 AANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEV--ASVD 749
+++ L GV IG++TPY Q ++ + L++ Y+ I V A+V
Sbjct: 484 GLVAMQMMLIGLLDGV--QSIGIVTPYRAQSRFLSTCIRE--MLQRTKYQNIPVLAATVH 539
Query: 750 SFQGREKDYIILSCVRSNEHQR 771
FQG E+D +I V S +R
Sbjct: 540 KFQGSERDMMIFDTVDSYPQER 561
Score = 89 (36.4 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455
P + + GPPGTGK+ + I+ ++G+ VLV A SN AVD L +++
Sbjct: 166 PTTYVWGPPGTGKSYNLSRIISAHYQKGKS-VLVLAHSNAAVDVLMSEVT 214
>TIGR_CMR|BA_3207 [details] [associations]
symbol:BA_3207 "conserved domain protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
RefSeq:NP_845517.1 RefSeq:YP_019848.1 RefSeq:YP_029239.1
ProteinModelPortal:Q81NI5 IntAct:Q81NI5 DNASU:1087476
EnsemblBacteria:EBBACT00000012886 EnsemblBacteria:EBBACT00000015522
EnsemblBacteria:EBBACT00000022854 GeneID:1087476 GeneID:2817117
GeneID:2850799 KEGG:ban:BA_3207 KEGG:bar:GBAA_3207 KEGG:bat:BAS2982
HOGENOM:HOG000093512 OMA:EVSMAYV ProtClustDB:CLSK916959
BioCyc:BANT260799:GJAJ-3044-MONOMER
BioCyc:BANT261594:GJ7F-3148-MONOMER Uniprot:Q81NI5
Length = 759
Score = 213 (80.0 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 83/322 (25%), Positives = 144/322 (44%)
Query: 464 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRA 523
L +K E + L+ + + EK +K ++ + SD +K +A +
Sbjct: 246 LASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQRAKIKE 305
Query: 524 TEREISQSADVICCTCVGAG-DPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLV 582
E+E ++A VI T D + F V++DE + A P+ + LG K++V+
Sbjct: 306 VEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLG-KRIVVC 364
Query: 583 GDHCQLGPVIMCK-KAARAGLAQSLF------ERLVLLGLKP--IRLQVQYRMHPSLSEF 633
GD QL P+ M + R L + +F E + P LQ Q RMH +S+F
Sbjct: 365 GDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHADISKF 424
Query: 634 PSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEI--SASGTSYLNRTE 691
++ Y+ + + +++ER+ P+ +F QMG + +ASG+ + N
Sbjct: 425 TNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRF-NIMS 483
Query: 692 AANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEV--ASVD 749
+++ L GV IG++TPY Q ++ + L++ Y+ I V A+V
Sbjct: 484 GLVAMQMMLIGLLDGV--QSIGIVTPYRAQSRFLSTCIRE--MLQRTKYQNIPVLAATVH 539
Query: 750 SFQGREKDYIILSCVRSNEHQR 771
FQG E+D +I V S +R
Sbjct: 540 KFQGSERDMMIFDTVDSYPQER 561
Score = 89 (36.4 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455
P + + GPPGTGK+ + I+ ++G+ VLV A SN AVD L +++
Sbjct: 166 PTTYVWGPPGTGKSYNLSRIISAHYQKGKS-VLVLAHSNAAVDVLMSEVT 214
>UNIPROTKB|F1NPN9 [details] [associations]
symbol:LOC100857488 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR011990 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 Gene3D:1.25.40.10 OMA:YRVALLY
GeneTree:ENSGT00550000074391 EMBL:AADN02030025 IPI:IPI00575663
Ensembl:ENSGALT00000005876 Uniprot:F1NPN9
Length = 1931
Score = 203 (76.5 bits), Expect = 9.7e-18, Sum P(2) = 9.7e-18
Identities = 69/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L K ++VL GDH QL P + + A L SL +R
Sbjct: 777 FTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 836
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + DF
Sbjct: 837 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKDF------ 886
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 887 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 946
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 947 DQVFRI------RAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 999
Score = 109 (43.4 bits), Expect = 9.7e-18, Sum P(2) = 9.7e-18
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYH-MAKQGQGQVLVCAP 442
P LNA Q AV ++ +Q P LI GP GTGKT T A V H + +Q ++L+C
Sbjct: 628 PRLNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTH 687
Query: 443 SNVAVD 448
SN A D
Sbjct: 688 SNSAAD 693
>MGI|MGI:1891384 [details] [associations]
symbol:Mov10l1 "Moloney leukemia virus 10-like 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007517 "muscle organ development" evidence=IDA]
[GO:0008283 "cell proliferation" evidence=IDA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0045786 "negative regulation
of cell cycle" evidence=IDA] MGI:MGI:1891384 GO:GO:0005524
GO:GO:0005737 GO:GO:0008283 GO:GO:0007283 GO:GO:0007517
GO:GO:0004386 eggNOG:COG1112 GO:GO:0045786 CTD:54456
HOVERGEN:HBG052382 KO:K13983 InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:AF285587 EMBL:AF340211 EMBL:AY303754
EMBL:AK084786 IPI:IPI00118099 IPI:IPI00227971 IPI:IPI00453884
RefSeq:NP_112550.2 UniGene:Mm.358791 ProteinModelPortal:Q99MV5
SMR:Q99MV5 STRING:Q99MV5 PhosphoSite:Q99MV5 PaxDb:Q99MV5
PRIDE:Q99MV5 DNASU:83456 GeneID:83456 KEGG:mmu:83456
HOGENOM:HOG000015363 InParanoid:Q99MV5 NextBio:350584
CleanEx:MM_MOV10L1 Genevestigator:Q99MV5
GermOnline:ENSMUSG00000015365 Uniprot:Q99MV5
Length = 1187
Score = 184 (69.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 74/222 (33%), Positives = 103/222 (46%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV----------LLGL----KPI---RL 620
Q+VL GD QLGPVI + A GL S+ ERL+ G P+ +L
Sbjct: 911 QIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKL 970
Query: 621 QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR--PMFFYVQMGQE 677
YR H +L PS FY L+ V + + + + W +P + P+ F+ G E
Sbjct: 971 VKNYRSHSALLALPSRLFYHRELE--VCADPKVVTSL-LGWEKLPRKGFPLIFHGVRGNE 1027
Query: 678 EISASGTSYLNRTEAANVEKIVTTFLRS--GVVPSQ-IGVITPYEGQRAYIVNYMSRNGA 734
S+ + EA V + RS V S+ IGVITPY Q I + RN
Sbjct: 1028 AREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKI-KILLRNVD 1086
Query: 735 LRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH--QRNRY 774
L +I+V SV+ FQG+E I++S VRSNE + +RY
Sbjct: 1087 LT-----DIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRY 1123
Score = 146 (56.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 39/84 (46%), Positives = 48/84 (57%)
Query: 534 VICCTCVGAGDPRLANFR---FRQVLIDESTQATEPECLIPLVLGAK---QVVLVGDHCQ 587
+I TC AG R F V +DE+ QA+EPECLIPL L + Q+VL GD Q
Sbjct: 861 IIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGDPMQ 920
Query: 588 LGPVIMCKKAARAGLAQSLFERLV 611
LGPVI + A GL S+ ERL+
Sbjct: 921 LGPVIKSRLAMAYGLNVSMLERLM 944
Score = 123 (48.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 32/66 (48%), Positives = 39/66 (59%)
Query: 389 PELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVT--SAAIVYHMAKQGQGQVLVCAP 442
P LN +Q AV+ +L RP+ I GPPGTGKTVT A + H A ++LVCAP
Sbjct: 745 PVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALP-DSRILVCAP 803
Query: 443 SNVAVD 448
SN A D
Sbjct: 804 SNSAAD 809
Score = 38 (18.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 467 KSREAVSSPVEHLTLHYQVRHLDTSEKSE 495
K+++ V +H T + RH+ T+++ E
Sbjct: 695 KNKKTVKDQTKHTT---EERHVGTTDQPE 720
>UNIPROTKB|J3QS41 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC005544 EMBL:AC007448
HGNC:HGNC:16878 ChiTaRS:HELZ Ensembl:ENST00000580168 Uniprot:J3QS41
Length = 1943
Score = 201 (75.8 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 68/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L + ++VL GDH QL P + + A L SL +R
Sbjct: 789 FTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 848
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + DF
Sbjct: 849 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKDF------ 898
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 899 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 958
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 959 DQVFRI------RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 1011
Score = 110 (43.8 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 29/66 (43%), Positives = 38/66 (57%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ-GQVLVCAP 442
P LNA Q AV ++ +Q P LI GP GTGKT T A V H+ +Q + ++L+C
Sbjct: 640 PRLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTH 699
Query: 443 SNVAVD 448
SN A D
Sbjct: 700 SNSAAD 705
>UNIPROTKB|G3X7G5 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] GO:GO:0007283 GO:GO:0007281
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:DAAA02015125 EMBL:DAAA02015122
EMBL:DAAA02015123 EMBL:DAAA02015124 Ensembl:ENSBTAT00000027109
Uniprot:G3X7G5
Length = 1214
Score = 185 (70.2 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 74/222 (33%), Positives = 100/222 (45%)
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV----------LLGL----KPI---RL 620
Q+VL GD QLGPVI + A GL S+ ERL+ G P+ +L
Sbjct: 912 QIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDEDAFGACGAYNPLLVTKL 971
Query: 621 QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR--PMFFYVQMGQE 677
YR H +L PS FY L+ V + + + W +P + P+ F+ G E
Sbjct: 972 VKNYRSHSALLALPSRLFYHRELE--VCADPTVVASL-LGWEKLPRKGFPLIFHGVRGNE 1028
Query: 678 EISASGTSYLNRTEAANVEKIVTTFLRS---GVVPSQIGVITPYEGQRAYIVNYMSRNGA 734
S+ N EA V + RS V IGVITPY Q I + RN
Sbjct: 1029 AREGRSPSWFNPAEAVQVMRYCCMLARSVSSQVSARDIGVITPYRKQVEKI-KILLRNVD 1087
Query: 735 LRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH--QRNRY 774
L +I+V SV+ FQG+E +I+S VRSNE + +RY
Sbjct: 1088 LM-----DIKVGSVEEFQGQEYLVVIISTVRSNEDRFEDDRY 1124
Score = 147 (56.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 39/84 (46%), Positives = 48/84 (57%)
Query: 534 VICCTCVGAGDPRLANFR---FRQVLIDESTQATEPECLIPLVLGAK---QVVLVGDHCQ 587
V+ TC AG R F V +DE+ QA+EPECLIPL L + Q+VL GD Q
Sbjct: 862 VLITTCSSAGLFYQIGLRVGHFTHVFVDEAGQASEPECLIPLGLVSDVSGQIVLAGDPMQ 921
Query: 588 LGPVIMCKKAARAGLAQSLFERLV 611
LGPVI + A GL S+ ERL+
Sbjct: 922 LGPVIKSRLAMAYGLNVSMLERLM 945
Score = 119 (46.9 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 31/65 (47%), Positives = 38/65 (58%)
Query: 389 PELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPS 443
P LN +Q AV+ +L RPI + GPPGTGKTVT AI+ ++LVCAPS
Sbjct: 746 PMLNENQKLAVRRILSGDCRPIPYVLFGPPGTGKTVTIIEAILQVFHALPDSRILVCAPS 805
Query: 444 NVAVD 448
N A D
Sbjct: 806 NSAAD 810
>UNIPROTKB|E1BZJ8 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:AADN02050039 EMBL:AADN02050037
EMBL:AADN02050038 IPI:IPI00585215 Ensembl:ENSGALT00000013959
ArrayExpress:E1BZJ8 Uniprot:E1BZJ8
Length = 1192
Score = 176 (67.0 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 75/226 (33%), Positives = 104/226 (46%)
Query: 566 PECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGL---------- 615
P LI V G Q+VLVGD QLGP+I + A GL SL ERL+ +
Sbjct: 906 PIGLISEVNG--QIVLVGDPKQLGPLIKSRIAVAFGLNISLLERLISRDMYLRDEDAFSA 963
Query: 616 ----KPI---RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR- 666
P+ +L YR H +L PS FY L+ V + S + W +P +
Sbjct: 964 DGSYNPLLITKLVNNYRSHSALLALPSKLFYHKELE--VCADTSVVSSL-LHWEKLPRKG 1020
Query: 667 -PMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRS---GVVPSQIGVITPYEGQR 722
P+ F+ G+E S+ N TEA V + ++ V + IGVITPY Q
Sbjct: 1021 FPLIFHGVRGKETREGHSPSWFNPTEAVQVMQYCCHLAKNESIAVSVTDIGVITPYRKQV 1080
Query: 723 AYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
I ++ R+ L +I+V +V+ FQG+E ILS VRS E
Sbjct: 1081 EKI-KFLLRSIDL-----SDIKVGTVEEFQGQECMVTILSTVRSYE 1120
Score = 141 (54.7 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 39/86 (45%), Positives = 52/86 (60%)
Query: 534 VICCTCVGAG-----DPRLANFRFRQVLIDESTQATEPECLIPLVLGAK---QVVLVGDH 585
+I TC AG RL +F V++DE+ QA+EPE LIP+ L ++ Q+VLVGD
Sbjct: 866 IIITTCSSAGMFYQTGTRLGHFT--HVILDEAGQASEPESLIPIGLISEVNGQIVLVGDP 923
Query: 586 CQLGPVIMCKKAARAGLAQSLFERLV 611
QLGP+I + A GL SL ERL+
Sbjct: 924 KQLGPLIKSRIAVAFGLNISLLERLI 949
Score = 124 (48.7 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 35/88 (39%), Positives = 45/88 (51%)
Query: 378 TLPRRFGAPGLPELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVT--SAAIVYHMAK 431
T+ R G P LN Q AVK +L RP I GPPGTGKT+T A + H
Sbjct: 739 TIKWRAGEFFNPMLNKQQKLAVKRILSGECRPTPYILFGPPGTGKTITVVEAILQIHFTL 798
Query: 432 QGQGQVLVCAPSNVAVDQLAEKISATGL 459
++LVCAPSN A D + ++ + L
Sbjct: 799 P-DSRILVCAPSNAATDLICLRLHQSNL 825
>DICTYBASE|DDB_G0274797 [details] [associations]
symbol:aqr "intron-binding protein aquarius homolog"
species:44689 "Dictyostelium discoideum" [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR024860 dictyBase:DDB_G0274797
GenomeReviews:CM000151_GR GO:GO:0005681 EMBL:AAFI02000012
GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 RefSeq:XP_643918.1 ProteinModelPortal:Q555Z2
PRIDE:Q555Z2 EnsemblProtists:DDB0233439 GeneID:8619345
KEGG:ddi:DDB_G0274797 InParanoid:Q555Z2 ProtClustDB:CLSZ2431000
Uniprot:Q555Z2
Length = 1487
Score = 180 (68.4 bits), Expect = 7.1e-17, Sum P(3) = 7.1e-17
Identities = 59/212 (27%), Positives = 104/212 (49%)
Query: 575 GAKQVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEF 633
G K+V+L+GDH QL P++ + A+ + QSLF RL+ L + I L Q R PS+SE
Sbjct: 1194 GLKRVILIGDHNQLPPIVQNQSLAKYSHFDQSLFTRLIRLEIPHITLDRQGRSRPSISEL 1253
Query: 634 PSNSFYEGTLQNGVTINER-----QSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN 688
S Y+G LQ+ + E+ + G+ + + + N +G+ E + Y N
Sbjct: 1254 FSWK-YKG-LQDLPLVKEQLQFKLANPGLAYDYQLINVDESDGYGVGESE--PTPYFYQN 1309
Query: 689 RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRN----GALRQQLYKEIE 744
EA + + + G +I V+T Y GQ+ + + + Q ++
Sbjct: 1310 LGEAEYIVAMFQYLIAIGYPSEKITVLTTYNGQKNLLRDVFKAKCTPQDPKKTQYGLPLK 1369
Query: 745 VASVDSFQGREKDYIILSCVRSNEHQRNRYVK 776
+ ++D +QG++ D I+LS VR+ ++ R V+
Sbjct: 1370 ITTIDKYQGQQNDIILLSLVRTKQYGHIRDVR 1401
Score = 107 (42.7 bits), Expect = 7.1e-17, Sum P(3) = 7.1e-17
Identities = 37/133 (27%), Positives = 64/133 (48%)
Query: 390 ELNASQVFAVKSVLQRP-ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ-VLVCAPSNVAV 447
E + Q+ A+ S ++R ++LI GPPGTGKT + I+ ++ + L+ SN A+
Sbjct: 863 EFTSKQIEAISSGMKRDNLTLIVGPPGTGKTDIAVQIISNIYHSSPNERTLIITHSNQAL 922
Query: 448 DQLAEKISATGLK---VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD 504
+QL EKI + ++RL ++ +SS + +D L KL Q+
Sbjct: 923 NQLFEKIYRLDINERYLLRL-GHGQKQLSSTNSTQKDFTKTGRIDFWLDLRLKKLDQVDK 981
Query: 505 EQGELSSSDEKKY 517
+S +D+ Y
Sbjct: 982 LAKSISVTDDVSY 994
Score = 63 (27.2 bits), Expect = 7.1e-17, Sum P(3) = 7.1e-17
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 515 KKYKALKRATERE---ISQSADVICCTCVGAGDPR----LANFRFRQVLIDESTQATEPE 567
K ++ LK +R + + + ++ TC A R F+F +L++ES Q ++ E
Sbjct: 1098 KVFELLKSPNDRYNYLLLKQSKIVAMTCTHAALKRNELLRLGFKFDNLLMEESAQISDIE 1157
Query: 568 CLIPLVL 574
IPL L
Sbjct: 1158 SFIPLQL 1164
>FB|FBgn0041164 [details] [associations]
symbol:armi "armitage" species:7227 "Drosophila melanogaster"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS;IMP] [GO:0007319 "negative
regulation of oskar mRNA translation" evidence=IMP] [GO:0000578
"embryonic axis specification" evidence=NAS;IMP] [GO:0016325
"oocyte microtubule cytoskeleton organization" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007317 "regulation of
pole plasm oskar mRNA localization" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0007616 "long-term memory"
evidence=IMP] [GO:0030424 "axon" evidence=IDA] [GO:0045202
"synapse" evidence=IDA] [GO:0031023 "microtubule organizing center
organization" evidence=IMP] [GO:0046843 "dorsal appendage
formation" evidence=IMP] [GO:0007318 "pole plasm protein
localization" evidence=IMP] [GO:0070725 "Yb body" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] GO:GO:0005524
GO:GO:0005737 EMBL:AE014296 GO:GO:0016246 GO:GO:0000184
GO:GO:0030424 GO:GO:0043025 GO:GO:0030425 GO:GO:0007616
GO:GO:0045202 GO:GO:0007318 eggNOG:COG1112 EMBL:AY598469
RefSeq:NP_001014556.1 RefSeq:NP_647816.2 ProteinModelPortal:Q6J5K9
SMR:Q6J5K9 IntAct:Q6J5K9 STRING:Q6J5K9 PaxDb:Q6J5K9 GeneID:38427
KEGG:dme:Dmel_CG11513 UCSC:CG11513-RA CTD:38427 FlyBase:FBgn0041164
InParanoid:Q6J5K9 OMA:ITISTCT OrthoDB:EOG4DZ094 PhylomeDB:Q6J5K9
GenomeRNAi:38427 NextBio:808602 Bgee:Q6J5K9 GermOnline:CG11513
GO:GO:0070725 GO:GO:0003678 GO:GO:0046843 GO:GO:0031023
InterPro:IPR026122 PANTHER:PTHR10887:SF17 Uniprot:Q6J5K9
Length = 1274
Score = 161 (61.7 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 75/276 (27%), Positives = 118/276 (42%)
Query: 391 LNASQVFAVKSVLQRPISLIQ----GPPGTGKTVTSAAIVYHMAKQGQG-QVLVCAPSNV 445
LN+ Q AV ++L+ I GPPG+GKT+T + + + G ++LV PSN
Sbjct: 784 LNSIQKRAVFNILRGEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNS 843
Query: 446 AVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDE 505
+ D + +++ S+ + L + QV D E+ D
Sbjct: 844 SADLVTKRL-----------IDSKALLQGDFIRLVSYNQVEK-DLIPP-EIMSYCATSDV 890
Query: 506 QGELSSSDEKKY---KALKRATEREISQSADVICCTCVGAGDPRLANF---RFRQVLIDE 559
G + S ++K LK + + + + TC G+ F F VL DE
Sbjct: 891 -GAVGSCEDKMMVTESGLKLRCQAKFIGTHRITISTCTTLGNFLQLGFPAGHFTHVLFDE 949
Query: 560 STQATEPECLIPLVLGAK---QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLK 616
+ Q TEPE ++P+V+ K QVVL GD QL ++ + A++ G + S ERL L
Sbjct: 950 AGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERL--LERS 1007
Query: 617 PIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINER 652
P R +Q FP +S Y + + N R
Sbjct: 1008 PYRKDLQ--------RFPESSGYNPLVLTKLLYNYR 1035
Score = 136 (52.9 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 47/167 (28%), Positives = 77/167 (46%)
Query: 614 GLKPI---RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGI--------DFPWP 662
G P+ +L YR PS+ S FY+ L ++ + + S + +
Sbjct: 1021 GYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESEKD 1080
Query: 663 VPN-RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQ 721
+P FFY +G+ + S+ N E V + R+ V QIG+ITPY+ Q
Sbjct: 1081 IPQAHGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITPYQKQ 1140
Query: 722 RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
V M R+ + + ++ SV+ FQG+E+D I++S VRS+E
Sbjct: 1141 ----VK-MLRSMFIGTDVVMP-KIGSVEEFQGQERDIILISTVRSSE 1181
Score = 44 (20.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 489 DTSEKSELHKLQQLKDEQGELSSSDEKKYKAL-KRATER 526
+T+E + L +LQ L+ E LS +D Y++L K+A +
Sbjct: 57 ETTE-NHLKRLQNLRKELSYLSETDWM-YESLDKKAAHK 93
>CGD|CAL0002159 [details] [associations]
symbol:DNA2 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] InterPro:IPR026851 InterPro:IPR014808
CGD:CAL0002159 Pfam:PF08696 eggNOG:COG1112 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
InterPro:IPR022765 Pfam:PF01930 EMBL:AACQ01000161 EMBL:AACQ01000157
RefSeq:XP_712310.1 RefSeq:XP_712454.1 ProteinModelPortal:Q59RL2
STRING:Q59RL2 GeneID:3645932 GeneID:3646072 KEGG:cal:CaO19.1192
KEGG:cal:CaO19.8783 Uniprot:Q59RL2
Length = 1426
Score = 199 (75.1 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 78/262 (29%), Positives = 122/262 (46%)
Query: 534 VICCTCVGAGDPRL-ANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592
VI TC+ D + F ++DE++Q T P L PL AK+ V+VGDH QL P++
Sbjct: 1076 VIATTCLSITDVCFNLRYSFDYCIVDEASQITLPVSLGPLRF-AKKFVMVGDHDQLQPLV 1134
Query: 593 MCK-KAARAGLAQSLFERLVLLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTL------- 643
K + L++SLF L + L QYRM+ + + Y L
Sbjct: 1135 THPDKRVKQELSRSLFSLLAKEHPDSVSHLTYQYRMNSDIMNVCNTLIYNNKLKCGSEQV 1194
Query: 644 -QNGVTINERQ--SSGI------DFPW-----PVPNRPMFF-YVQMGQEEISASGTSYLN 688
QN + I + +S I D W N +F Y + E + G +N
Sbjct: 1195 AQNSLKIPHPEVLNSFIGEDVSPDSQWIHKIFDEKNNVLFLDYDAVPAVEENV-GEMVIN 1253
Query: 689 RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV 748
EA +++IV + GV +IGV++ Y Q ++ + +N L K++E+ +
Sbjct: 1254 TKEALLIQQIVNALVHGGVKEDEIGVMSFYRAQ----LSVLKKN--LNN--LKDLEILTA 1305
Query: 749 DSFQGREKDYIILSCVRSNEHQ 770
D +QGR+K+ II+S VRSNE +
Sbjct: 1306 DQYQGRDKECIIISLVRSNERK 1327
Score = 97 (39.2 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 386 PGLPELNASQVFAVKSVLQRP-ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444
P N Q+ A+K V SLI G PGTGKT A ++ + Q + VL+ + +N
Sbjct: 962 PDAETFNPDQIAALKKVFSADDYSLIVGMPGTGKTTVIAQLIKVLVAQRKS-VLLTSYTN 1020
Query: 445 VAVDQLAEKISATGLKVVRL 464
AVD + K+ ++ +R+
Sbjct: 1021 SAVDNILLKLKDLDIEFLRI 1040
Score = 40 (19.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 485 VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVI 535
+R ++ E HK ++K+ G L SS K + +E +++DV+
Sbjct: 103 IRWKESPEIKGSHKQMEIKNSFGGLPSSPLKN---INPESENVDDRTSDVL 150
>ZFIN|ZDB-GENE-060526-371 [details] [associations]
symbol:mov10b.2 "Moloney leukemia virus 10,
homolog, b.2" species:7955 "Danio rerio" [GO:0000932 "cytoplasmic
mRNA processing body" evidence=ISS] [GO:0035279 "mRNA cleavage
involved in gene silencing by miRNA" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] ZFIN:ZDB-GENE-060526-371
GO:GO:0005524 GO:GO:0003723 GO:GO:0004386 GO:GO:0000932
GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 EMBL:BX323059
HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 IPI:IPI00611260
RefSeq:NP_001037805.1 UniGene:Dr.94434 ProteinModelPortal:Q1LXK5
Ensembl:ENSDART00000078491 GeneID:555950 KEGG:dre:555950 CTD:555950
InParanoid:Q1LXK5 NextBio:20881245 Uniprot:Q1LXK5
Length = 1015
Score = 151 (58.2 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 46/161 (28%), Positives = 82/161 (50%)
Query: 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR--PMFFYVQMG 675
+L + YR HP + E P+ FY+G L+ + SS W +P++ P+ F+ G
Sbjct: 754 KLIMNYRSHPYILEVPNRLFYDGELK---ACADEISSNQYCMWEHLPSKGFPVIFHGVPG 810
Query: 676 QEEISASGTSYLNRTEAANV-----EKIVTTFLRSGV---VPSQIGVITPYEGQRAYIVN 727
++E ++ S+ N E N+ +K++ T + G+ P IG+I PY Q I
Sbjct: 811 KDERESNSPSFFNIYEI-NILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKR 869
Query: 728 YMSRNGALRQQL-YKEIEVASVDSFQGREKDYIILSCVRSN 767
+ + + + ++V SV+ FQG+E+ I++S VRS+
Sbjct: 870 AIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSS 910
Score = 151 (58.2 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 67/247 (27%), Positives = 107/247 (43%)
Query: 465 CAKSREAVSSPVEHLTLHYQVRHLDTSEKSELH-KLQQLKDEQGELSSSDEKKYKALKRA 523
CA S A E L H+D + L+ + KD L + + +
Sbjct: 584 CAPSNSAADQLCEKLITS---EHVDAHKIYRLYASSRNQKDIPKILKDNCNVDEEMIDFP 640
Query: 524 TEREISQSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK- 577
+ ++ S ++ CT V AG F F +DE+ A E E +I + +L A+
Sbjct: 641 CKEDL-MSYKILICTLVTAGRLVTGGFSEDHFTHNFVDEAGHAVESETIISVAGLLNAEK 699
Query: 578 -QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV----LLGLKPI--------RLQVQY 624
Q+VL GD QLGP++ A GL SL ERL+ L + +L + Y
Sbjct: 700 GQLVLAGDPKQLGPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLIMNY 759
Query: 625 RMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR--PMFFYVQMGQEEISA 681
R HP + E P+ FY+G L+ + SS W +P++ P+ F+ G++E +
Sbjct: 760 RSHPYILEVPNRLFYDGELK---ACADEISSNQYCMWEHLPSKGFPVIFHGVPGKDERES 816
Query: 682 SGTSYLN 688
+ S+ N
Sbjct: 817 NSPSFFN 823
Score = 142 (55.0 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 75/266 (28%), Positives = 117/266 (43%)
Query: 230 VLLCREPC-LNMMKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRY 287
+LL E C +++ + +KD+VT+ D KR+ P +N ++ GD L L
Sbjct: 376 LLLYLEECQMHVDIKRYNKDSVTLHRD---RDKRLMGLNLPGVSENRPSVLRGDHLLLTK 432
Query: 288 SGDAAHP---AWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQ 344
S + ++ H ++L Q ++ L R + V +D F V+F + +R+
Sbjct: 433 SEEVTFSNVTKYKGYVHRVELD-QVKLGLSKRFLKDVYID-KMKFRVEF-----TVNRIP 485
Query: 345 GAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP------ELNASQVFA 398
++ AV + H+L +V M +L P L E N Q A
Sbjct: 486 VRLQHRAVHMA-----VQHNL--KDVLFPMASRSL-NPVSPPALRLFDRKLEYNFQQYSA 537
Query: 399 VKSVL---QRPIS-LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEK 453
V +++ +P L+ GPPGTGKTVT + + K +L CAPSN A DQL EK
Sbjct: 538 VCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEK 597
Query: 454 ISAT----GLKVVRLCAKSREAVSSP 475
+ + K+ RL A SR P
Sbjct: 598 LITSEHVDAHKIYRLYASSRNQKDIP 623
>FB|FBgn0033889 [details] [associations]
symbol:CG6701 species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR007087 InterPro:IPR015880
PROSITE:PS00028 SMART:SM00355 GO:GO:0008270 GO:GO:0005622
FlyBase:FBgn0033889 ChiTaRS:CG6701 EMBL:AY128442
ProteinModelPortal:Q8MQQ9 STRING:Q8MQQ9 PRIDE:Q8MQQ9
InParanoid:Q8MQQ9 ArrayExpress:Q8MQQ9 Bgee:Q8MQQ9 Uniprot:Q8MQQ9
Length = 1261
Score = 240 (89.5 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 105/399 (26%), Positives = 169/399 (42%)
Query: 389 PE-LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM-AKQGQGQVLVCAPSNVA 446
PE + A + A+ L+ P ++ GPPGTGKT T +Y + + + +LV A SN A
Sbjct: 542 PEQMQAVRQIALSPRLKAPY-IVFGPPGTGKTSTIVEAIYQLYINRPETHILVLAGSNTA 600
Query: 447 VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQ 506
D++A L+++R AK+ ++ P+ + R +D + L E
Sbjct: 601 CDEVA-------LRLLRAIAKAPQSQPRPLTRIFSANCDRRIDN--------IDDLLLEY 645
Query: 507 GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR----FRQVLIDESTQ 562
+ + Y A++ + I + CT AG F + V +DE+
Sbjct: 646 SNMYTVHF--YPAVQAVHQYRI------VICTLSLAGKLSTGGFAANNVYTHVFVDEAAA 697
Query: 563 ATEPECLIPLVLGAK---QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPI- 618
+TE E L+ + ++L GDH QLGPV+ ++A GL +LFERL+ +
Sbjct: 698 STEAEVLMGITCTLSPTLNLILSGDHKQLGPVLQSQRANEWGLGLTLFERLLQRKCYQVE 757
Query: 619 -----------RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRP 667
RL +R HP + +N +YEG L+ + F P P
Sbjct: 758 EDGSYNASVQTRLIRNFRSHPEIVSLYNNMYYEGHLRTEAPMEIVCRFHNWFYLPNATFP 817
Query: 668 MFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVN 727
+ F+ G + S S N E V V + G+ ++ + T Y
Sbjct: 818 IMFHSVFGTTMNTKSSVSLCNNKEIDVVMDYVKDLMYFGLNGEKL-LQTDIGIISPYKNQ 876
Query: 728 YMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
Y L + + +I+ SV+ FQG+EK II+S VRS
Sbjct: 877 YQRIQEQLNMRNWSQIDCGSVELFQGKEKHVIIVSFVRS 915
>ASPGD|ASPL0000069352 [details] [associations]
symbol:AN7246 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000641 InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 PRINTS:PR00819 SMART:SM00382
GO:GO:0005524 EMBL:BN001304 eggNOG:COG0464 GO:GO:0017111
EMBL:AACD01000123 RefSeq:XP_680515.1 ProteinModelPortal:Q5AWT4
EnsemblFungi:CADANIAT00000198 GeneID:2870136 KEGG:ani:AN7246.2
HOGENOM:HOG000168598 OMA:LDNQFRL OrthoDB:EOG4CJZR5 Uniprot:Q5AWT4
Length = 2310
Score = 150 (57.9 bits), Expect = 3.2e-16, Sum P(3) = 3.2e-16
Identities = 62/227 (27%), Positives = 95/227 (41%)
Query: 506 QGELSSSD--EKKYKALKRATEREISQSADVICCTCVGAG-DPRLANFRFRQV-LIDEST 561
QG ++ D +KK + R++ S +I CT A + + N V L++E+
Sbjct: 692 QGLIARLDRCQKKLDEMWNERTRDVLLSKRIIGCTTTAAAINASVLNTTSPGVVLLEEAG 751
Query: 562 QATEPECLIPLVLGAKQVVLVGDHCQLGPVI-----MCKKAARAGLAQSLFERLVLLGLK 616
+ E L L KQ++++GDH QL P I +K + L +SLFERLV G
Sbjct: 752 EILESHVLTALGSHTKQLIMIGDHQQLRPKINNYALSVEKGSGYDLNRSLFERLVESGYP 811
Query: 617 PIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID--FPWPVPNRPMFFYVQM 674
L Q+RM P +S Y L T G+ + ++P F +
Sbjct: 812 HSTLAKQHRMAPEISALVRRLTYPDLLDGDKTKTRLAPRGLQNRVVFIDHSQPEGFLHGV 871
Query: 675 GQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQ 721
+ S N E V KIV + G ++ ++TPY GQ
Sbjct: 872 SDRDGDGGKGSKQNTFEVKLVLKIVKYLGQQGYGTDKLVILTPYLGQ 918
Score = 130 (50.8 bits), Expect = 3.2e-16, Sum P(3) = 3.2e-16
Identities = 40/132 (30%), Positives = 68/132 (51%)
Query: 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQL 450
L+ SQ+ ++ S L + +SLIQGPPGTGK+ A I + K + +LV +N A+DQ
Sbjct: 462 LDPSQMESLLSGLTQRVSLIQGPPGTGKSFVGALIAKALYKHSKETILVMCYTNHALDQF 521
Query: 451 AEKISATGLK---VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQG 507
E + G+ +VRL +KS + + P+ L+ +R K+ + LK +
Sbjct: 522 LEDLMDIGIDESAIVRLGSKSCQR-TKPLR-LSAQQAIR--PRKSKATWSIIDGLKSKAR 577
Query: 508 ELSSSDEKKYKA 519
++S + + A
Sbjct: 578 DISEELDMAFSA 589
Score = 71 (30.1 bits), Expect = 3.2e-16, Sum P(3) = 3.2e-16
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
Y+ RA ++++ S Q + + I+++++D++QG E D +I + RSN+
Sbjct: 940 YDLVRAGLISHASA-----QHVKRPIKLSTIDNYQGEESDIVIATLTRSNK 985
>UNIPROTKB|E1BMP7 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9913 "Bos taurus" [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISS]
[GO:0043139 "5'-3' DNA helicase activity" evidence=ISS] [GO:0017108
"5'-flap endonuclease activity" evidence=ISS] [GO:0004518 "nuclease
activity" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0000076 "DNA
replication checkpoint" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0045740 "positive regulation of DNA replication"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0042645 GO:GO:0016890 GO:GO:0045740 GO:GO:0000729
GO:GO:0017108 GO:GO:0000076 GO:GO:0043137 EMBL:DAAA02061817
IPI:IPI00688022 NextBio:20878938 GO:GO:0005760 GO:GO:0043139
GO:GO:0043142 GO:GO:0033567 GO:GO:0043504 GO:GO:0006264
PANTHER:PTHR10887:SF14 Uniprot:E1BMP7
Length = 1061
Score = 242 (90.2 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 90/338 (26%), Positives = 163/338 (48%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGE 508
L + A G V+ L + + AV + + L +++ L + ++H +Q+ +E E
Sbjct: 661 LVRILYACGFSVL-LTSYTHSAVDNILLKLA-KFKIGFLRLGQIQKVHPDIQKFTEE--E 716
Query: 509 LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC 568
+ S K K+L A E+ S ++ TC+G P + F ++DE++Q ++P C
Sbjct: 717 ICRS--KSIKSL--ALLEELYNSQLIVATTCMGINHPIFSRKTFDFCIVDEASQISQPVC 772
Query: 569 LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHP 628
L PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+
Sbjct: 773 LGPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQYRMNS 831
Query: 629 SLSEFPSNSFYEGTLQNGVTINERQSSGIDFP-WPVPNRPMFFYVQMGQEE--ISA---- 681
+ + YEG L+ G ++ ++ I+ P + + FY + I+A
Sbjct: 832 KIMSLSNKLTYEGKLECGS--DKVANAVINLPNFKDVKLELEFYADYSENPWLIAAFEPN 889
Query: 682 SGTSYLNRTEAANVEKI----VTTFLRSGVVPSQIGVITPY---EGQRAYIVNYMSR--- 731
+ +LN + E++ V+ + + +V V I Y +
Sbjct: 890 NPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKV 949
Query: 732 -NGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+ L Q +EV +VD +QGR+K +++S VRSNE
Sbjct: 950 ISDLLAQSSVGMVEVNTVDRYQGRDKSIVVVSFVRSNE 987
Score = 45 (20.9 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 445 CLMLTLESQSKDN 457
>UNIPROTKB|K7DXW3 [details] [associations]
symbol:DNA2 "DNA replication nuclease DNA2" species:9913
"Bos taurus" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 EMBL:DAAA02061817
PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852
Ensembl:ENSBTAT00000003395 Uniprot:K7DXW3
Length = 1137
Score = 242 (90.2 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 90/338 (26%), Positives = 163/338 (48%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGE 508
L + A G V+ L + + AV + + L +++ L + ++H +Q+ +E E
Sbjct: 737 LVRILYACGFSVL-LTSYTHSAVDNILLKLA-KFKIGFLRLGQIQKVHPDIQKFTEE--E 792
Query: 509 LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC 568
+ S K K+L A E+ S ++ TC+G P + F ++DE++Q ++P C
Sbjct: 793 ICRS--KSIKSL--ALLEELYNSQLIVATTCMGINHPIFSRKTFDFCIVDEASQISQPVC 848
Query: 569 LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHP 628
L PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM+
Sbjct: 849 LGPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQYRMNS 907
Query: 629 SLSEFPSNSFYEGTLQNGVTINERQSSGIDFP-WPVPNRPMFFYVQMGQEE--ISA---- 681
+ + YEG L+ G ++ ++ I+ P + + FY + I+A
Sbjct: 908 KIMSLSNKLTYEGKLECGS--DKVANAVINLPNFKDVKLELEFYADYSENPWLIAAFEPN 965
Query: 682 SGTSYLNRTEAANVEKI----VTTFLRSGVVPSQIGVITPY---EGQRAYIVNYMSR--- 731
+ +LN + E++ V+ + + +V V I Y +
Sbjct: 966 NPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKV 1025
Query: 732 -NGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+ L Q +EV +VD +QGR+K +++S VRSNE
Sbjct: 1026 ISDLLAQSSVGMVEVNTVDRYQGRDKSIVVVSFVRSNE 1063
Score = 45 (20.9 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 521 CLMLTLESQSKDN 533
>WB|WBGene00014208 [details] [associations]
symbol:ZK1067.2 species:6239 "Caenorhabditis elegans"
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] GeneTree:ENSGT00700000104467
EMBL:Z70038 RefSeq:NP_001254204.1 EnsemblMetazoa:ZK1067.2b
GeneID:174463 KEGG:cel:CELE_ZK1067.2 CTD:174463 WormBase:ZK1067.2b
OMA:THIGVQI Uniprot:E9P860
Length = 2443
Score = 216 (81.1 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 75/262 (28%), Positives = 122/262 (46%)
Query: 515 KKYKALKRATEREISQSADVICCTCVGAGD--PRLANFRFRQVLIDESTQATEPECLIPL 572
+ +K + + EI + +I T G P L R ++++E+ + E + +
Sbjct: 1422 ENFKNAQNRVDAEIMRMTMIIGATTTGCSRLRPTLEKVGPRILIVEEAAEVLEAHIISAM 1481
Query: 573 VLGAKQVVLVGDHCQLGPVIMCKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPSLS 631
+ + VV++GDH QL P + A GL S+FERLV GL +L+ Q+RM+ ++S
Sbjct: 1482 ISTVEHVVMIGDHKQLRPNPAVHELGVAYGLRISMFERLVERGLPFSQLRQQHRMNLTIS 1541
Query: 632 E-FPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRT 690
+ SFY+ VT E D N +FF+ EE S S+LN+
Sbjct: 1542 DKIVKLSFYDN-----VTDAENVGLYPDVQGMATN--LFFWSHTSMEE-SPDEVSWLNKH 1593
Query: 691 EAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVN-YMSRNGALRQQLYKEIEVASVD 749
E + +V L+ + I V+ Y Q+ + Y + G+ I V +VD
Sbjct: 1594 EISMTVALVKHLLKQNYTTNDIVVLATYSAQKNLMYREYANVFGSTPDS--NVIPVETVD 1651
Query: 750 SFQGREKDYIILSCVRSNEHQR 771
SFQG+E+ +I+S VRS+ R
Sbjct: 1652 SFQGKERKIVIVSLVRSHRGGR 1673
Score = 83 (34.3 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ-----GQVLVCAPSNV 445
++ SQ A + + +SLIQGPPGTGKT IV + + +LV +N
Sbjct: 1040 MDESQRLAFCNTFKYELSLIQGPPGTGKTHIGVQIVKTILQNRSYWKITEPILVVCFTNS 1099
Query: 446 AVDQLAEKI 454
+D L E+I
Sbjct: 1100 GLDNLLERI 1108
Score = 47 (21.6 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 474 SPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKK-YKALKRATERE 527
SP E + R + KS+ K ++ K + +L S DE K Y ++ + + E
Sbjct: 1227 SPDEAIGCWLLERDFGKATKSQTKKAKKPKFQGAQLDSEDENKDYFTVEDSDDEE 1281
Score = 43 (20.2 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 364 HLLGHEVEVQMVRNTLPRRFGAPGLPELNASQV 396
H+L E +V RN + G+P+ N S++
Sbjct: 339 HILSSE-DVHAARNVCETKILVRGVPQKNDSEL 370
Score = 38 (18.4 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 374 MVRNTLPRRFGAPGLPELNAS 394
MVRN P PG+ N+S
Sbjct: 232 MVRNLAPPGLPPPGISISNSS 252
>ASPGD|ASPL0000064563 [details] [associations]
symbol:AN7014 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0005681 EMBL:BN001304
GO:GO:0004386 GO:GO:0000398 HOGENOM:HOG000170551 GO:GO:0097157
PANTHER:PTHR10887:SF5 ProteinModelPortal:C8VC84
EnsemblFungi:CADANIAT00000462 OMA:TIYENEM Uniprot:C8VC84
Length = 1422
Score = 194 (73.4 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 80/275 (29%), Positives = 126/275 (45%)
Query: 513 DEKKYKALKRATERE---ISQSADVICCTCVGAGDPR--LAN--FRFRQVLIDESTQATE 565
D + ++ L++ ++ + + A +I T A R +A+ F + ++++E+ Q TE
Sbjct: 1014 DIRPFEILRQPKDKANYLLVKEARIIAMTSTHAAMRRQEIADLGFHYDNIVMEEAAQITE 1073
Query: 566 PECLIPLVL-----GA---KQVVLVGDHCQLGPVIMCKKAAR--AGLAQSLFERLVLLGL 615
E IP L G K++VL GDH Q P+I A R A QSLF RL+ LG+
Sbjct: 1074 VESFIPTALQNMKEGQLPLKRIVLCGDHLQNSPIIQ-NLAFRQYAHFEQSLFLRLIRLGV 1132
Query: 616 KPIRLQVQYRMHPSLSEFPSNSFYE-GTLQNGVTINE-RQSS-GIDFPWPVPNRPMFFYV 672
I L Q R PS++E + G L E +Q++ G F + N P Y
Sbjct: 1133 PAITLDQQGRARPSIAELFRWRYQNLGNLPIVEQAPEFKQANAGFQFEYQFINVPD--YQ 1190
Query: 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRS-GVVPSQIGVITPYEGQRAYIVNYMSR 731
G+ E + L E A + ++R G S+I ++ Y GQ A I + ++
Sbjct: 1191 GTGEREPTPHFVQNLGEAEYAVA---IFQYMRLLGYPASKISILATYAGQTALIKDVLNH 1247
Query: 732 NGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
+ V +VD +QG + DYIILS R+
Sbjct: 1248 RCSKNTLFGMPKIVTTVDRYQGEQNDYIILSLTRT 1282
Score = 98 (39.6 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 389 PELNA-----SQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ-VLVCAP 442
P LNA +Q+ A+ S Q +++I GPPGTGKT + I+ ++ + L+ A
Sbjct: 801 PRLNAVRFTPAQIQAIASGTQPGLTVIVGPPGTGKTDVATQIINNIYHNFPTERTLLVAH 860
Query: 443 SNVAVDQLAEKISA 456
SN A++QL +KI A
Sbjct: 861 SNQALNQLFQKIVA 874
Score = 43 (20.2 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 114 IVEGMAGLSFEETGDDVEGFE 134
++E GL+ E +GD F+
Sbjct: 725 LIESFPGLTIEPSGDATSSFQ 745
>UNIPROTKB|F1RXR7 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] GO:GO:0007283 GO:GO:0007281
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:BX321913 Ensembl:ENSSSCT00000001066
Uniprot:F1RXR7
Length = 1211
Score = 156 (60.0 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 83/277 (29%), Positives = 122/277 (44%)
Query: 534 VICCTCVGAGDPRLANFR---FRQVLIDESTQATEPECLIPLVLGAK---QVVLVGDHCQ 587
V+ TC AG R F V +DE+ QA+EPECLIPL L + Q++L GD Q
Sbjct: 857 VVITTCSSAGLFYQIGLRVGHFTHVFVDEAGQASEPECLIPLGLISDIDGQIILAGDPMQ 916
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPVI + A GL S+ ERL+ +P L+ + F + Y L +
Sbjct: 917 LGPVIKSRLAMAYGLNVSMLERLMA---RPAYLRDE-------DAFGACGAYNPLLVTKL 966
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQM---GQEEISAS--GTSYLNRTEAANV-EKIVTT 701
N R S + +P+R +F++ ++ ++ S G L R V + T
Sbjct: 967 VKNYRSHSAL---LALPSR-LFYHRELEVCADPKVVTSLLGWEKLPRKGFPLVFHGVRGT 1022
Query: 702 FLRSGVVPSQIGVITPYEGQR--AYIVNYMSRN------GAL---RQQLYK--------- 741
R G PS + R + +S G + R+Q+ K
Sbjct: 1023 EAREGRSPSWFNPTEAVQVMRYCCLLARSVSSQVSAGDIGVITPYRKQVEKIKILLRNVG 1082
Query: 742 --EIEVASVDSFQGREKDYIILSCVRSNEH--QRNRY 774
E++V SV+ FQG+E II+S VRSNE + +RY
Sbjct: 1083 LAEVKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRY 1119
Score = 126 (49.4 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 38/92 (41%), Positives = 53/92 (57%)
Query: 389 PELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVT--SAAI-VYHMAKQGQGQVLVCA 441
P LN +Q AVK +L RP+ + GPPGTGKTVT A + V+H + +LVCA
Sbjct: 741 PMLNENQQLAVKRILSGDCRPLPYVLFGPPGTGKTVTVIEAVLQVFHALPDSR--ILVCA 798
Query: 442 PSNVAVDQLAEKI-SATGLK---VVRLCAKSR 469
PSN A D + ++ + GL+ +VR+ A R
Sbjct: 799 PSNSAADLVCLRLHESRGLRPGAMVRVNATCR 830
>RGD|1304735 [details] [associations]
symbol:Mov10l1 "Mov10l1, Moloney leukemia virus 10-like 1,
homolog (mouse)" species:10116 "Rattus norvegicus" [GO:0007281
"germ cell development" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0007517 "muscle organ development" evidence=ISO]
[GO:0008283 "cell proliferation" evidence=ISO] [GO:0045786
"negative regulation of cell cycle" evidence=ISO] RGD:1304735
GeneTree:ENSGT00550000074391 InterPro:IPR026125
PANTHER:PTHR10887:SF6 IPI:IPI00560261 Ensembl:ENSRNOT00000050620
ArrayExpress:F1M357 Uniprot:F1M357
Length = 550
Score = 147 (56.8 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 83/279 (29%), Positives = 124/279 (44%)
Query: 534 VICCTCVGAGDPRLANFR---FRQVLIDESTQATEPECLIPLVLGAK---QVVLVGDHCQ 587
+I TC AG R F V +DE+ QA+EPECLIPL L + Q+VL GD Q
Sbjct: 224 IIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGDPMQ 283
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPVI + A GL S+ ERL+ +P L+ + + F + Y L +
Sbjct: 284 LGPVIKSRLAMAYGLNVSMLERLMS---RPAYLRDE-------NAFGACGAYNPLLVTKL 333
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQM---GQEEISAS--GTSYLNRTEAANV-EKIVTT 701
N R S + +P+R +F++ ++ ++ S G L R + +
Sbjct: 334 VKNYRSHSAL---LALPSR-LFYHRELEVCADPKVVTSLLGWEKLPRKGFPLIFHGVRGN 389
Query: 702 FLRSGVVPSQIGVITPYEGQRAYIVNYMSRN----------GAL---RQQLYK------- 741
R G PS + R Y ++RN G + R+Q+ K
Sbjct: 390 EAREGRSPSWFSPAEAVQVMR-YCC-LLARNVSSQVSSKDIGVITPYRKQVEKIKILLRN 447
Query: 742 ----EIEVASVDSFQGREKDYIILSCVRSNEH--QRNRY 774
+I+V SV+ FQG+E I++S VRSNE + +RY
Sbjct: 448 VDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRY 486
Score = 126 (49.4 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 36/87 (41%), Positives = 49/87 (56%)
Query: 389 PELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVT--SAAIVYHMAKQGQGQVLVCAP 442
P LN +Q AV+ +L RP+ I GPPGTGKTVT A + H A ++LVCAP
Sbjct: 108 PVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALP-DSRILVCAP 166
Query: 443 SNVAVDQLAEKISATGLKVVRLCAKSR 469
SN A D + ++ + KV++ A R
Sbjct: 167 SNSAADLVCLRLHES--KVLKPAAMVR 191
>ZFIN|ZDB-GENE-090313-71 [details] [associations]
symbol:dna2 "DNA replication helicase 2 homolog
(yeast)" species:7955 "Danio rerio" [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISS] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=ISS]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISS] [GO:0005760 "gamma DNA polymerase
complex" evidence=ISS] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0045740 "positive regulation of DNA replication"
evidence=ISS] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
ZFIN:ZDB-GENE-090313-71 GO:GO:0017108 GO:GO:0043142 GO:GO:0033567
PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852 EMBL:BX530068
IPI:IPI00901582 Ensembl:ENSDART00000109798 ArrayExpress:F1Q892
Bgee:F1Q892 Uniprot:F1Q892
Length = 1378
Score = 195 (73.7 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 45/130 (34%), Positives = 74/130 (56%)
Query: 518 KALKRATEREISQSAD-VICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGA 576
K ++ E E S + ++ TC+G P + RF ++DE++Q ++P C+ PL A
Sbjct: 1038 KGIQTLEELEQLYSRELIVATTCMGVKHPIFSRRRFDFCIVDEASQISQPVCIGPLFY-A 1096
Query: 577 KQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSN 636
++ VLVGDH QL P++ +A G+ +SLF+RL ++L VQYRM+ ++ +
Sbjct: 1097 QRFVLVGDHQQLPPIVQNAEARSLGMDESLFKRLEHHRDAVVQLNVQYRMNSAIMSLSNA 1156
Query: 637 SFYEGTLQNG 646
YEG L+ G
Sbjct: 1157 LMYEGRLECG 1166
Score = 163 (62.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 73/260 (28%), Positives = 120/260 (46%)
Query: 534 VICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPL-------VLGAKQ----VVLV 582
++ TC+G P + RF ++DE++Q ++P C+ PL ++G Q +V
Sbjct: 1055 IVATTCMGVKHPIFSRRRFDFCIVDEASQISQPVCIGPLFYAQRFVLVGDHQQLPPIVQN 1114
Query: 583 GDHCQLG-PVIMCKKAA--RAGLAQ-SLFERL--VLLGLKPI-----RLQV-QYRMHPSL 630
+ LG + K+ R + Q ++ R+ ++ L RL+ + ++
Sbjct: 1115 AEARSLGMDESLFKRLEHHRDAVVQLNVQYRMNSAIMSLSNALMYEGRLECGSEKTANAV 1174
Query: 631 SEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQM---GQEEISASGTSYL 687
+ PS + E L+ V + S+ + PN P+ F E + SG S
Sbjct: 1175 LQLPSRAQAEEELELYVC-QPQYSAWVQAALE-PNSPVCFLDTSEVPAPETVEKSGIS-- 1230
Query: 688 NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVAS 747
N TEA V+ +VT L++G IGVI PY Q I + L+ +K +EV +
Sbjct: 1231 NHTEAVLVQGLVTLLLKAGCRACDIGVIAPYRQQLKVI------SSLLQGDAFKALEVNT 1284
Query: 748 VDSFQGREKDYIILSCVRSN 767
VD +QGR+K II+S VRSN
Sbjct: 1285 VDKYQGRDKSVIIVSFVRSN 1304
Score = 86 (35.3 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 941 LKGLNKPQKQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILHACGFS-VLLTSYTHSA 999
Query: 447 VDQLAEKISATGLKVVRL 464
VD + K+ + +RL
Sbjct: 1000 VDNILLKLKRFKIGFLRL 1017
Score = 38 (18.4 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 140 FTEHACRYCGV 150
FTE ACR G+
Sbjct: 1030 FTEEACRAKGI 1040
>RGD|1306791 [details] [associations]
symbol:Dna2 "DNA replication helicase 2 homolog (yeast)"
species:10116 "Rattus norvegicus" [GO:0000076 "DNA replication
checkpoint" evidence=ISO;ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003678 "DNA helicase activity"
evidence=ISO;ISS] [GO:0004518 "nuclease activity" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=ISO;ISS]
[GO:0006264 "mitochondrial DNA replication" evidence=IEA;ISO]
[GO:0006284 "base-excision repair" evidence=IEA;ISO] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=IEA;ISO] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISO;ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=ISO;ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISO;ISS] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO;ISS] [GO:0043504 "mitochondrial DNA repair"
evidence=IEA;ISO] [GO:0045740 "positive regulation of DNA
replication" evidence=IEA;ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
RGD:1306791 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0051539 GO:GO:0042645 GO:GO:0016890
GO:GO:0045740 GO:GO:0000729 GO:GO:0017108 GO:GO:0000076
GO:GO:0043137 GO:GO:0005760 GO:GO:0043139 GO:GO:0043142
GO:GO:0033567 GO:GO:0043504 GO:GO:0006264 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 IPI:IPI00368049
ProteinModelPortal:D3ZG52 Ensembl:ENSRNOT00000000438
UCSC:RGD:1306791 OrthoDB:EOG4CZBF7 Uniprot:D3ZG52
Length = 1059
Score = 237 (88.5 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 90/336 (26%), Positives = 157/336 (46%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGE 508
L +SA G V+ L + + AV + + L +++ L + ++H +Q+ +E E
Sbjct: 661 LVRILSACGFSVL-LTSYTHSAVDNILLKLA-KFKIGFLRLGQSHKVHPDIQKFTEE--E 716
Query: 509 LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC 568
+ + +L A E+ S V+ TC+G P + F ++DE++Q ++P C
Sbjct: 717 MCRL--RSIASL--AHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQPIC 772
Query: 569 LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHP 628
L PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L +QYRM+
Sbjct: 773 LGPLFF-SRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQYRMNR 831
Query: 629 SLSEFPSNSFYEGTLQNG--------VTINERQSSGIDFPWPVPNRPMFFYVQMGQEEIS 680
+ + YEG L+ G +T+ + ++F + P V +
Sbjct: 832 KIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYSDNPWLAGVFEPDNPVC 891
Query: 681 ASGTSYLNRTE------AANV-EKIVTTFLRSGVVPSQIGVITPYEGQRA-YIVNYMSRN 732
T + E +NV E + FL S + + G G A Y +
Sbjct: 892 FLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKA--GCSPSDIGIIAPYRQQLRTIT 949
Query: 733 GALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
L + +EV +VD +QGR+K I++S VRSNE
Sbjct: 950 DLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNE 985
Score = 39 (18.8 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 237 CLNMMKESQSKD 248
CL + ESQSKD
Sbjct: 445 CLMLTLESQSKD 456
>UNIPROTKB|F1NWZ8 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9031 "Gallus gallus" [GO:0000076
"DNA replication checkpoint" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IEA] [GO:0045740 "positive regulation of DNA replication"
evidence=IEA] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0005634 GO:GO:0006284 GO:GO:0042645 GO:GO:0016890
GO:GO:0045740 GO:GO:0017108 GO:GO:0043137 GO:GO:0005760
GO:GO:0043142 GO:GO:0043504 GO:GO:0006264 PANTHER:PTHR10887:SF14
EMBL:AADN02028013 GeneTree:ENSGT00550000074852 OMA:EHESLCH
IPI:IPI00584167 Ensembl:ENSGALT00000006429 ArrayExpress:F1NWZ8
Uniprot:F1NWZ8
Length = 1009
Score = 225 (84.3 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 99/352 (28%), Positives = 169/352 (48%)
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK-LQQLKDEQGE 508
L +SA G V+ L + + AV + + L ++V L ++H +++ +E E
Sbjct: 679 LVRILSACGFSVL-LTSFTHTAVDNILLKLA-KFKVGFLRLGRAQKVHPDIRKFTEE--E 734
Query: 509 LSSSDEKKYKALKRATE-REISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPE 567
+ S K++K T+ E+ S V+ C+G P +F ++DE++Q ++P
Sbjct: 735 ICRS-----KSIKSVTDLEELYNSQPVVATACMGINHPIFVQKQFDFCIVDEASQISQPI 789
Query: 568 CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMH 627
CL PL +K+ VLVGDH QL P++ +A G+++SLF+RL ++L VQYRM+
Sbjct: 790 CLGPLFC-SKRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLEQNQNAVVQLTVQYRMN 848
Query: 628 PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYL 687
+ + YEG L+ G +E+ S+ +PN ++M + E + + ++L
Sbjct: 849 SKIMSLSNKLVYEGKLECG---SEKVSNATA---NLPN------LKMLKLEFADASKTWL 896
Query: 688 NRTEAANVEKIVTTFLRSGVVPS-----QIGVITPYEGQRAYIVNYM--------SRNGA 734
E +K V FL + VP+ + GV E + + + + S G
Sbjct: 897 K--EVLEPDKPVC-FLNTEKVPAPEHTEKGGVCNVTEAKLVFFLTTLFIKAGCRPSDIGI 953
Query: 735 L---RQQL---------YKE--IEVASVDSFQGREKDYIILSCVRSNEHQRN 772
+ R QL KE +EV ++D +QGR+K II+S VR N + N
Sbjct: 954 ISPYRHQLKVITDLMARLKENRVEVNTIDKYQGRDKSIIIVSFVR-NSNDEN 1004
>MGI|MGI:2138982 [details] [associations]
symbol:Znfx1 "zinc finger, NFX1-type containing 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] MGI:MGI:2138982 GO:GO:0046872
EMBL:CH466551 eggNOG:COG1112 GeneTree:ENSGT00700000104467
EMBL:AL591711 CTD:57169 HOVERGEN:HBG052201 OMA:CVRLCSE
EMBL:AK149249 EMBL:AK150223 EMBL:AK157301 EMBL:BC025488
IPI:IPI00660406 RefSeq:NP_001028368.2 UniGene:Mm.297074
ProteinModelPortal:Q8R151 STRING:Q8R151 PhosphoSite:Q8R151
PaxDb:Q8R151 PRIDE:Q8R151 Ensembl:ENSMUST00000048988 GeneID:98999
KEGG:mmu:98999 HOGENOM:HOG000231023 InParanoid:A2A5R3
NextBio:353739 Bgee:Q8R151 CleanEx:MM_ZNFX1 Genevestigator:Q8R151
GermOnline:ENSMUSG00000039501 Uniprot:Q8R151
Length = 1909
Score = 244 (91.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 84/296 (28%), Positives = 136/296 (45%)
Query: 485 VRHLDTSEKSELHKL--QQLKDEQGELSSSDEKKYKA-------LKRATEREISQSADVI 535
V LD S + +L++L Q + + S E++Y+ L+ + I + A+V+
Sbjct: 915 VWQLDLSSRWQLYRLWLQMYQADTRRRILSYERQYRTWAERMAELRLQEDLHILKDAEVV 974
Query: 536 CCTCVGAGDPR--LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIM 593
T GA R L R V+++E+ + E + L + ++L+GDH QL P
Sbjct: 975 GMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSAN 1034
Query: 594 CKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINER 652
A+ L SLFERLV + + +RL Q+RM P ++ + Y+ + +
Sbjct: 1035 VYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYE 1094
Query: 653 QSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQI 712
Q G+ N +FF E+ G S+ N+ EA V ++ L +PSQI
Sbjct: 1095 QIKGVS-----SN--LFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQI 1147
Query: 713 GVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
++T Y GQ + M + + I+V VD +QG E D I+LS VRSN+
Sbjct: 1148 TILTTYTGQLFCLRKLMP------VKTFAGIKVHVVDKYQGEENDIILLSLVRSNQ 1197
Score = 37 (18.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 8 LFETASQPDTGTDAYTFLEFNTQGESD-FDAYP 39
L E Q D YT ++ +GE + + A P
Sbjct: 298 LQEKRRQGSLRVDTYTLVQAEAEGEVESYRAMP 330
>SGD|S000001207 [details] [associations]
symbol:DNA2 "Tripartite DNA replication factor" species:4932
"Saccharomyces cerevisiae" [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000784
"nuclear chromosome, telomeric region" evidence=IDA] [GO:0000723
"telomere maintenance" evidence=IMP] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006273 "lagging strand
elongation" evidence=IGI;IMP] [GO:0006281 "DNA repair"
evidence=IEA;IGI;IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0043142 "single-stranded
DNA-dependent ATPase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0000706 "meiotic DNA double-strand break processing"
evidence=IGI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR026851
SGD:S000001207 InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 EMBL:BK006934
GO:GO:0001302 GO:GO:0051539 GO:GO:0004003 eggNOG:COG1112
GO:GO:0000784 EMBL:U00027 GO:GO:0000723 GO:GO:0000706 GO:GO:0000733
GO:GO:0017108 GO:GO:0000014 GO:GO:0043139 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
GeneTree:ENSGT00550000074852 OrthoDB:EOG47H8Z4 PIR:S48904
RefSeq:NP_012034.1 ProteinModelPortal:P38859 SMR:P38859
DIP:DIP-2324N IntAct:P38859 MINT:MINT-620090 STRING:P38859
EnsemblFungi:YHR164C GeneID:856569 KEGG:sce:YHR164C CYGD:YHR164c
HOGENOM:HOG000112234 OMA:GLARYNI NextBio:982411
Genevestigator:P38859 GermOnline:YHR164C GO:GO:0035861
GO:GO:0006273 Uniprot:P38859
Length = 1522
Score = 172 (65.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 68/238 (28%), Positives = 103/238 (43%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
F V++DE++Q + P L PL G + ++VGDH QL P++ A GL +SLF+
Sbjct: 1180 FDYVILDEASQISMPVALGPLRYG-NRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFC 1238
Query: 612 LLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFP---------- 660
+ + L +QYRM + + Y+ L+ G QS + P
Sbjct: 1239 EKHPESVAELTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNES 1298
Query: 661 -----WPV----PNRPMFFYVQMGQEEI--SASGTSYLNRTEAANVEKIVTTFLRSGVVP 709
W P R + F +I + + N EA + V L SGV
Sbjct: 1299 ANSKQWLEDILEPTRKVVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPC 1358
Query: 710 SQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
IGV+T Y Q + ++N +Y +E+ + D FQGR+K II+S VR N
Sbjct: 1359 EDIGVMTLYRAQLRLLKKIFNKN------VYDGLEILTADQFQGRDKKCIIISMVRRN 1410
Score = 142 (55.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 42/135 (31%), Positives = 67/135 (49%)
Query: 531 SADVICCTCVGAGDPRLA-NFR-FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQL 588
S V+ TC+G D N + F V++DE++Q + P L PL G + ++VGDH QL
Sbjct: 1157 STSVVATTCLGINDILFTLNEKDFDYVILDEASQISMPVALGPLRYG-NRFIMVGDHYQL 1215
Query: 589 GPVIMCKKAARAGLAQSLFERLVLLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
P++ A GL +SLF+ + + L +QYRM + + Y+ L+ G
Sbjct: 1216 PPLVKNDAARLGGLEESLFKTFCEKHPESVAELTLQYRMCGDIVTLSNFLIYDNKLKCGN 1275
Query: 648 TINERQSSGIDFPWP 662
NE + ++ P P
Sbjct: 1276 --NEVFAQSLELPMP 1288
Score = 107 (42.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 391 LNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
LN +Q A+ V++ +LI G PGTGKT A I+ + +G+ +VL+ + ++ AVD
Sbjct: 1052 LNLNQKEAIDKVMRAEDYALILGMPGTGKTTVIAEIIKILVSEGK-RVLLTSYTHSAVDN 1110
Query: 450 LAEKISATGLKVVRLCAKSR 469
+ K+ T + ++RL K +
Sbjct: 1111 ILIKLRNTNISIMRLGMKHK 1130
>UNIPROTKB|Q9P2E3 [details] [associations]
symbol:ZNFX1 "NFX1-type zinc finger-containing protein 1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] Pathway_Interaction_DB:telomerasepathway
GO:GO:0046872 eggNOG:COG1112 EMBL:AL049766 EMBL:AB037825
EMBL:AK000573 EMBL:AK002139 EMBL:AK022641 EMBL:AK023836
IPI:IPI00165981 IPI:IPI00220462 RefSeq:NP_066363.1
UniGene:Hs.371794 ProteinModelPortal:Q9P2E3 SMR:Q9P2E3
IntAct:Q9P2E3 STRING:Q9P2E3 PhosphoSite:Q9P2E3 DMDM:23821814
PaxDb:Q9P2E3 PeptideAtlas:Q9P2E3 PRIDE:Q9P2E3
Ensembl:ENST00000371752 Ensembl:ENST00000396105 GeneID:57169
KEGG:hsa:57169 UCSC:uc002xui.3 CTD:57169 GeneCards:GC20M047854
HGNC:HGNC:29271 HPA:HPA046629 neXtProt:NX_Q9P2E3
PharmGKB:PA143485687 HOVERGEN:HBG052201 InParanoid:Q9P2E3
OMA:CVRLCSE PhylomeDB:Q9P2E3 ChiTaRS:ZNFX1 GenomeRNAi:57169
NextBio:63185 ArrayExpress:Q9P2E3 Bgee:Q9P2E3 CleanEx:HS_ZNFX1
Genevestigator:Q9P2E3 GermOnline:ENSG00000124201 Uniprot:Q9P2E3
Length = 1918
Score = 238 (88.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 85/297 (28%), Positives = 138/297 (46%)
Query: 485 VRHLDTSEKSELHKLQ-QL--KDEQGELSSSDEKKYKA-------LKRATEREISQSADV 534
V LD S + +L++L QL D + ++ S E++Y+ L+ + I + A V
Sbjct: 922 VWQLDLSSRWQLYRLWLQLYQADTRRKILSY-ERQYRTSAERMAELRLQEDLHILKDAQV 980
Query: 535 ICCTCVGAGDPR--LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592
+ T GA R L R V+++E+ + E + L + ++L+GDH QL P
Sbjct: 981 VGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSA 1040
Query: 593 MCKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINE 651
A+ L SLFERLV + + +RL Q+RM P ++ + Y+ + +
Sbjct: 1041 NVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLKY 1100
Query: 652 RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQ 711
+ G+ N +FF E+ G S+ N+ EA V ++ FL +PSQ
Sbjct: 1101 EKIKGVS-----SN--LFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQ 1153
Query: 712 IGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
I ++T Y GQ + M + + + V VD +QG E D I+LS VRSN+
Sbjct: 1154 ITILTTYTGQLFCLRKLMPA------KTFAGVRVHVVDKYQGEENDIILLSLVRSNQ 1204
Score = 38 (18.4 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 454 ISATGLKVVRLCAKSREAVSSPVEHL 479
+ A+G+ + K+ E V + +EHL
Sbjct: 280 LRASGVDIEEETEKNLEKVQTIIEHL 305
Score = 37 (18.1 bits), Expect = 5.1e-14, Sum P(2) = 5.1e-14
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 271 EDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKL 305
ED LR D++R+ + P S G V K+
Sbjct: 396 EDQGLRKRKFDDIRIYFDTRIITPMCSSSGIVYKV 430
>WB|WBGene00001016 [details] [associations]
symbol:dna-2 species:6239 "Caenorhabditis elegans"
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA;IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IDA] [GO:0006259 "DNA
metabolic process" evidence=IDA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005634 GO:GO:0009792
eggNOG:COG1112 GO:GO:0017108 GO:GO:0000014 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
GeneTree:ENSGT00550000074852 OMA:EHESLCH GO:GO:0043141 EMBL:Z50070
PIR:T22132 RefSeq:NP_496515.1 ProteinModelPortal:Q20371 SMR:Q20371
STRING:Q20371 PaxDb:Q20371 PRIDE:Q20371 EnsemblMetazoa:F43G6.1a
GeneID:174809 KEGG:cel:CELE_F43G6.1 UCSC:F43G6.1a CTD:174809
WormBase:F43G6.1a HOGENOM:HOG000016745 InParanoid:Q20371
NextBio:885596 ArrayExpress:Q20371 Uniprot:Q20371
Length = 1105
Score = 232 (86.7 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 108/403 (26%), Positives = 180/403 (44%)
Query: 390 ELNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448
+LN Q AV L +++G PG+GKT + ++ + + +VL+ A ++ AVD
Sbjct: 685 KLNNEQRKAVVHALATEDFMMVEGLPGSGKTTLISVLIQCLVATNK-KVLLAAFTHSAVD 743
Query: 449 QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGE 508
+ K++ L S ++ ++ +TL K++L + E
Sbjct: 744 NILTKLTKEVAAEKILRLGSSSSIKDDIKKMTL-----------KAKL---------ENE 783
Query: 509 LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR-FRQVLIDESTQATEPE 567
S E+ Y A+ R++ ++ ++ CTC L ++R F V++DE++ EP
Sbjct: 784 TS---EEYYAAV-----RKVMKTTPIVACTCHHVPRELLFSYRHFDVVIVDEASMVLEP- 834
Query: 568 CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYR 625
L+P++ + + VLVGD QL P+++ +KA + G S E+L G+ + L QYR
Sbjct: 835 LLLPVLATSNKFVLVGDCKQLTPLVVSRKAKQEGAGISTMEKLQQSHPGVV-VSLTSQYR 893
Query: 626 MHPSLSEFPSNSFYEGTLQNGVTINERQS------------SGID-----FPWPVPNRPM 668
M+ +S S FYE L G R S G D + + +
Sbjct: 894 MNREISVLSSKLFYENRLICGNESVSRSSLDRTGDYIVAMDDGSDHIRKALSGDIKDSCV 953
Query: 669 FFYVQMG-QEEISAS---GTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAY 724
F Q ++ G N EA + ++ F+ SGV P +IGV++ Y Q +
Sbjct: 954 FLDTQSTINSKMQCEDGEGGGMCNDGEAKLISELCQQFVMSGVKPHEIGVMSAYRRQVDH 1013
Query: 725 IVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
I G L E+EV ++DS+QGREK II S +N
Sbjct: 1014 I------RGILNSD---ELEVNTIDSYQGREKRVIIWSLTWTN 1047
Score = 37 (18.1 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 115 VEGMAGLSFEETGDDVEGFE 134
++G G E GD V+ FE
Sbjct: 57 IQGF-GSGTEHDGDSVDSFE 75
>UNIPROTKB|F1NNW1 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9031
"Gallus gallus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IEA] GO:GO:0000932 GO:GO:0035279
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 OMA:VRFFKLD IPI:IPI00594294
EMBL:AADN02045008 Ensembl:ENSGALT00000002368 Uniprot:F1NNW1
Length = 735
Score = 216 (81.1 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 105/353 (29%), Positives = 149/353 (42%)
Query: 390 ELNASQVFAVKSV---LQRPIS-LIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSN 444
E N Q AVK + + RP LI GPPGTGKTVT AI + ++L CAPSN
Sbjct: 258 EANEEQCQAVKHIVTGMSRPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPSN 317
Query: 445 VAVDQLAEKISATGLK---VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ 501
A D L +++ T + + R+ A S P + + D SEK ++ ++
Sbjct: 318 SAADLLCQRL-LTNIAPRYIYRIMASSANYKDVPADVRPCC----NWDDSEKCYVYPSKK 372
Query: 502 LKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR---FRQVLID 558
L K Y+ ++ T V AG ANF F V ID
Sbjct: 373 LL-----------KPYR---------------ILITTLVTAGRLVSANFPPGYFSHVFID 406
Query: 559 ESTQATEPECLIPLV-----------LGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLF 607
E A EPE ++ + Q+VL GD QLGPV+ AA+ GL SL
Sbjct: 407 ECGHAVEPESVVAIAGLLTTMDPDTNRNGGQLVLAGDPQQLGPVLRSPLAAQHGLGTSLL 466
Query: 608 ERLVLL---------GLKP---IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSS 655
ERL+L G P +L YR H ++ + P+ FY+ L+ +E
Sbjct: 467 ERLMLHNALYAKSDEGYNPQFVTKLLWNYRSHKAILKVPNELFYDSELK-AYEGSEPDVR 525
Query: 656 GIDFPWP-VPNR--PMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRS 705
W +PNR P+ F+ G++E A S+ N E V + + L+S
Sbjct: 526 NFYCTWEELPNRGVPIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQS 578
Score = 152 (58.6 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 48/160 (30%), Positives = 81/160 (50%)
Query: 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR--PMFFYVQMG 675
+L YR H ++ + P+ FY+ L+ +E W +PNR P+ F+ G
Sbjct: 490 KLLWNYRSHKAILKVPNELFYDSELK-AYEGSEPDVRNFYCTWEELPNRGVPIIFHGVCG 548
Query: 676 QEEISASGTSYLNRTEAANV----EKIVTTFLRSG---VVPSQIGVITPYEGQRAYI-VN 727
++E A S+ N E V +K++ + R G + P +IG+I+PY Q I +
Sbjct: 549 EDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLA 608
Query: 728 YMSRNGALRQQL-YKEIEVASVDSFQGREKDYIILSCVRS 766
S++ LR +++V SV+ FQG+E+ I++S VRS
Sbjct: 609 ITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRS 648
>UNIPROTKB|Q5ZKD7 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4
CTD:4343 EMBL:AJ720147 IPI:IPI00594294 RefSeq:NP_001012861.1
UniGene:Gga.1182 ProteinModelPortal:Q5ZKD7 STRING:Q5ZKD7
PRIDE:Q5ZKD7 GeneID:419872 KEGG:gga:419872 InParanoid:Q5ZKD7
NextBio:20822865 Uniprot:Q5ZKD7
Length = 967
Score = 211 (79.3 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 106/353 (30%), Positives = 150/353 (42%)
Query: 390 ELNASQVFAVKSV---LQRPIS-LIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSN 444
E N Q AVK + + RP LI GPPGTGKTVT AI + ++L CAPSN
Sbjct: 490 EANEEQCQAVKHIVTGMSRPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPSN 549
Query: 445 VAVDQLAEKISATGLK---VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ 501
A D L +++ T + + R+ A S P + + D SEK ++ ++
Sbjct: 550 SAADLLCQRL-LTNIAPRYIYRIMASSANYKDVPADVRPCC----NWDDSEKCYVYPSKK 604
Query: 502 LKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR---FRQVLID 558
L K Y+ ++ T V AG ANF F V ID
Sbjct: 605 LL-----------KPYR---------------ILITTLVTAGRLVSANFPPGYFSHVFID 638
Query: 559 ESTQATEPECLIPL--VL---------GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLF 607
E A EPE ++ + +L Q+VL GD QLGPV AA+ GL SL
Sbjct: 639 ECGHAVEPESVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLL 698
Query: 608 ERLVLL---------GLKP---IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSS 655
ERL+L G P +L YR H ++ + P+ FY+ L+ +E
Sbjct: 699 ERLMLHNALYAKSDEGYNPQFVTKLLWNYRSHKAILKVPNELFYDSELK-AYEGSEPDVR 757
Query: 656 GIDFPWP-VPNR--PMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRS 705
W +PNR P+ F+ G++E A S+ N E V + + L+S
Sbjct: 758 NFYCTWEELPNRGVPIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQS 810
Score = 152 (58.6 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 48/160 (30%), Positives = 81/160 (50%)
Query: 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP-VPNR--PMFFYVQMG 675
+L YR H ++ + P+ FY+ L+ +E W +PNR P+ F+ G
Sbjct: 722 KLLWNYRSHKAILKVPNELFYDSELK-AYEGSEPDVRNFYCTWEELPNRGVPIIFHGVCG 780
Query: 676 QEEISASGTSYLNRTEAANV----EKIVTTFLRSG---VVPSQIGVITPYEGQRAYI-VN 727
++E A S+ N E V +K++ + R G + P +IG+I+PY Q I +
Sbjct: 781 EDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLA 840
Query: 728 YMSRNGALRQQL-YKEIEVASVDSFQGREKDYIILSCVRS 766
S++ LR +++V SV+ FQG+E+ I++S VRS
Sbjct: 841 ITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRS 880
>FB|FBgn0036451 [details] [associations]
symbol:CG9425 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR003593
InterPro:IPR007087 InterPro:IPR011990 InterPro:IPR015880
Pfam:PF00642 PROSITE:PS00028 SMART:SM00355 SMART:SM00382
GO:GO:0005524 EMBL:AE014296 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:1.25.40.10 GO:GO:0017111 eggNOG:COG1112
GeneTree:ENSGT00550000074391 RefSeq:NP_996084.1 UniGene:Dm.11708
ProteinModelPortal:Q7KUL0 SMR:Q7KUL0 STRING:Q7KUL0 PaxDb:Q7KUL0
PRIDE:Q7KUL0 EnsemblMetazoa:FBtr0075693 EnsemblMetazoa:FBtr0333074
EnsemblMetazoa:FBtr0333075 GeneID:39613 KEGG:dme:Dmel_CG9425
UCSC:CG9425-RB FlyBase:FBgn0036451 InParanoid:Q7KUL0 OMA:WINELSG
OrthoDB:EOG46HDRH PhylomeDB:Q7KUL0 ChiTaRS:CG9425 GenomeRNAi:39613
NextBio:814517 ArrayExpress:Q7KUL0 Bgee:Q7KUL0 Uniprot:Q7KUL0
Length = 2103
Score = 163 (62.4 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 63/227 (27%), Positives = 102/227 (44%)
Query: 552 FRQVLIDESTQATEPECLIPLVLG--AKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F + +DE+ QA E E ++PL L + ++VL GDH Q+ P + A L SL ER
Sbjct: 951 FTHIFLDEAAQAMECEAIMPLALANDSTRIVLAGDHMQMSPELFSAFAKERKLHISLLER 1010
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P ++ + YR H ++ F S FYE L + +Q F
Sbjct: 1011 LYDHYPSNFPCKILLCENYRAHEAIIRFTSELFYEQKL----VASGKQPRHDRF------ 1060
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRS-----GVV-PSQIGVITPYE 719
P+ F+ G++ + T++ N E V + V+ + G + + IG++TPY
Sbjct: 1061 YPLTFFTTRGEDVQDKNSTAFYNNAEVYEVVERVSELRKRWPSAWGKLNDTSIGIMTPYS 1120
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS 766
Q + S LR++ I V V + QG++ + LS VR+
Sbjct: 1121 DQ---VFRIRSE---LRKRRMGGISVERVLNVQGKQFRAVFLSTVRT 1161
Score = 104 (41.7 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
P+LNA Q AV ++ ++ P L+ GP GTGKT T A + + Q + ++L+C S
Sbjct: 804 PKLNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLTQPEAKILICTHS 863
Query: 444 NVAVD 448
N A D
Sbjct: 864 NSAAD 868
Score = 46 (21.3 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 390 ELNASQVFA-VKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-----APS 443
EL+ Q+++ + L+R S+IQ G+ A + H + + +L A +
Sbjct: 122 ELSGQQIYSDISKTLERYKSIIQMIMN-GQHKAQALKIPHARLEDEMAILDTKLDHWATN 180
Query: 444 NVAVDQLAEKISATGLK 460
N+ +D+ ++ +S GLK
Sbjct: 181 NLPLDKYSKLLSNKGLK 197
>DICTYBASE|DDB_G0274777 [details] [associations]
symbol:DDB_G0274777 "DNA replication helicase"
species:44689 "Dictyostelium discoideum" [GO:0006261 "DNA-dependent
DNA replication" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR014808
dictyBase:DDB_G0274777 Pfam:PF08696 GO:GO:0005634 GO:GO:0006261
EMBL:AAFI02000012 GO:GO:0004003 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 KO:K10742 RefSeq:XP_643888.1
ProteinModelPortal:Q86IV6 EnsemblProtists:DDB0233088 GeneID:8619314
KEGG:ddi:DDB_G0274777 InParanoid:Q86IV6 Uniprot:Q86IV6
Length = 1838
Score = 144 (55.7 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 47/173 (27%), Positives = 81/173 (46%)
Query: 482 HYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYK-ALKRATEREISQSAD------V 534
H + HL + ++ L+ L+ D ++ L++ + I+QS +
Sbjct: 1375 HTSLDHLLLKFNKQYPNIEMLR-VASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQL 1433
Query: 535 ICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMC 594
+ +C+G L +F +IDE++ ++P + P +L K VLVGDH QL P++
Sbjct: 1434 VATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGP-ILKCKSFVLVGDHHQLPPIVNN 1492
Query: 595 KKAARAGLAQSLFERLVLLGLKPI-RLQVQYRMHPSLSEFPSNSFYEGTLQNG 646
K+A + GL SLF++L + L QYRM S+ ++ Y L G
Sbjct: 1493 KEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCG 1545
Score = 100 (40.3 bits), Expect = 7.4e-08, Sum P(4) = 7.4e-08
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 389 PELNASQVFAV-KSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAV 447
P LN Q A+ K++ + SLI G PGTGKT ++++ + + G+ +VL+ + ++ ++
Sbjct: 1320 PLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGK-KVLITSFTHTSL 1378
Query: 448 DQLAEKISAT--GLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL 502
D L K + ++++R+ A S + + TL Q T K L + QQL
Sbjct: 1379 DHLLLKFNKQYPNIEMLRV-ASSLNQIDPSLHRFTLEKQSFGNITQSKQYLER-QQL 1433
Score = 85 (35.0 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 727 NYMSRNGALRQQLYKEIE---VASVDSFQGREKDYIILSCVRSNE 768
N + N Q K+IE + ++D FQG++KD II+S VRSNE
Sbjct: 1732 NNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNE 1776
Score = 79 (32.9 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 642 TLQNGVTINERQSSGIDF-----PWPV----PNRPMFFYV--QMGQEEISASGTSYLNRT 690
+LQ N ++ ID WP PN + F Q+ S++G + N+T
Sbjct: 1553 SLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQT 1612
Query: 691 EAANVEKIVTTFL--RSGVVPSQIGVITPYEGQRAYI 725
EA N+ I+T L + + SQIG+ITP Q +I
Sbjct: 1613 EA-NIVAILTNCLINKLNINQSQIGIITPIRFQLNFI 1648
Score = 48 (22.0 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 95 TSSPSKRGANNSSNTSTSQIVEGMAGLSFEE 125
+SS S G N SSN ++ + + S +E
Sbjct: 241 SSSSSSGGGNKSSNNKKQKVSQSTSSTSLKE 271
Score = 38 (18.4 bits), Expect = 2.0e-11, Sum P(4) = 2.0e-11
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 95 TSSPSKRGANNSSNTSTS 112
T+SP+ NN++N + +
Sbjct: 868 TTSPNNNNNNNNNNNNNN 885
>UNIPROTKB|Q8EA89 [details] [associations]
symbol:SO_4019 "P-loop containing nucleoside triphosphate
hydrolase superfamily" species:211586 "Shewanella oneidensis MR-1"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001261 PROSITE:PS00758 GO:GO:0006508
GO:GO:0008237 EMBL:AE014299 GenomeReviews:AE014299_GR
RefSeq:NP_719549.1 ProteinModelPortal:Q8EA89 GeneID:1171647
KEGG:son:SO_4019 PATRIC:23527708 HOGENOM:HOG000221837 OMA:HRPCTSS
ProtClustDB:CLSK907456 Uniprot:Q8EA89
Length = 907
Score = 127 (49.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 87/339 (25%), Positives = 147/339 (43%)
Query: 460 KVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ-LKDEQG--ELSSSDEKK 516
K+ L A+ +E +S L HY++ L ++S L L+ Q +L +
Sbjct: 437 KLTALIAQ-KEDLSLKYLQLATHYRLNQLLKHKRSTLVSFASALRARQSAKQLDGFYKTD 495
Query: 517 YKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGA 576
+ ALK+ +S A + P + F V+IDE+TQA CL P + A
Sbjct: 496 FDALKQTFPIWLSSLASLHKVL------P-MEQQMFDLVIIDEATQANIAACL-PALQRA 547
Query: 577 KQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKP-IRLQVQYRMHPSLSEFPS 635
K ++VGD QL +A + + L GL P R + YR S+ + S
Sbjct: 548 KAALVVGDSKQLRHFSFLSRAKQTQIQTQL-------GLAPDCRGLMSYR-DASMLDLVS 599
Query: 636 NSFYEGTLQNGVTINER--------QSSGIDFPWPV----PNRPMFFYVQMGQEEISASG 683
S + V +NE Q S F + +RP + + ++ S
Sbjct: 600 QSL--ASQSQVVFLNEHFRSKPELIQFSNQQFYQGMLKIMQHRPCTSSGHLHRVHVTGSR 657
Query: 684 TSY-LNRTEA-ANVEKIVTTF--LRSGVVPSQIGVITPYEGQRAYIVNY-MSRNGALRQQ 738
S +N EA A ++K+ + +VPS IGV++ + Q Y+ ++R A QQ
Sbjct: 658 DSKGINAIEAEALIQKLSQLIDEQENALVPSSIGVLSCFRNQAEYLSQQILARFSA--QQ 715
Query: 739 LYK-EIEVASVDSFQGREKDYIILS-CVRSNEHQRNRYV 775
L + ++ +A+ FQG E+D ++LS + +N+ + Y+
Sbjct: 716 LERHQLRIATPFGFQGEERDIMLLSFSITANDSRAAVYL 754
Score = 118 (46.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 386 PGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445
PGL L+ +Q+ A+K + I GPPGTGK+ T A + +G+ VL+ A ++V
Sbjct: 256 PGL--LSRAQIQALKVAANHTLGQISGPPGTGKSYTIATVAAEQVLRGKS-VLIVAHTDV 312
Query: 446 AVDQLAEKI 454
AVD +A+K+
Sbjct: 313 AVDVIADKL 321
>TIGR_CMR|SO_4019 [details] [associations]
symbol:SO_4019 "hypothetical protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001261
PROSITE:PS00758 GO:GO:0006508 GO:GO:0008237 EMBL:AE014299
GenomeReviews:AE014299_GR RefSeq:NP_719549.1
ProteinModelPortal:Q8EA89 GeneID:1171647 KEGG:son:SO_4019
PATRIC:23527708 HOGENOM:HOG000221837 OMA:HRPCTSS
ProtClustDB:CLSK907456 Uniprot:Q8EA89
Length = 907
Score = 127 (49.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 87/339 (25%), Positives = 147/339 (43%)
Query: 460 KVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ-LKDEQG--ELSSSDEKK 516
K+ L A+ +E +S L HY++ L ++S L L+ Q +L +
Sbjct: 437 KLTALIAQ-KEDLSLKYLQLATHYRLNQLLKHKRSTLVSFASALRARQSAKQLDGFYKTD 495
Query: 517 YKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGA 576
+ ALK+ +S A + P + F V+IDE+TQA CL P + A
Sbjct: 496 FDALKQTFPIWLSSLASLHKVL------P-MEQQMFDLVIIDEATQANIAACL-PALQRA 547
Query: 577 KQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKP-IRLQVQYRMHPSLSEFPS 635
K ++VGD QL +A + + L GL P R + YR S+ + S
Sbjct: 548 KAALVVGDSKQLRHFSFLSRAKQTQIQTQL-------GLAPDCRGLMSYR-DASMLDLVS 599
Query: 636 NSFYEGTLQNGVTINER--------QSSGIDFPWPV----PNRPMFFYVQMGQEEISASG 683
S + V +NE Q S F + +RP + + ++ S
Sbjct: 600 QSL--ASQSQVVFLNEHFRSKPELIQFSNQQFYQGMLKIMQHRPCTSSGHLHRVHVTGSR 657
Query: 684 TSY-LNRTEA-ANVEKIVTTF--LRSGVVPSQIGVITPYEGQRAYIVNY-MSRNGALRQQ 738
S +N EA A ++K+ + +VPS IGV++ + Q Y+ ++R A QQ
Sbjct: 658 DSKGINAIEAEALIQKLSQLIDEQENALVPSSIGVLSCFRNQAEYLSQQILARFSA--QQ 715
Query: 739 LYK-EIEVASVDSFQGREKDYIILS-CVRSNEHQRNRYV 775
L + ++ +A+ FQG E+D ++LS + +N+ + Y+
Sbjct: 716 LERHQLRIATPFGFQGEERDIMLLSFSITANDSRAAVYL 754
Score = 118 (46.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 386 PGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445
PGL L+ +Q+ A+K + I GPPGTGK+ T A + +G+ VL+ A ++V
Sbjct: 256 PGL--LSRAQIQALKVAANHTLGQISGPPGTGKSYTIATVAAEQVLRGKS-VLIVAHTDV 312
Query: 446 AVDQLAEKI 454
AVD +A+K+
Sbjct: 313 AVDVIADKL 321
>UNIPROTKB|F6QXW0 [details] [associations]
symbol:dna2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:8364 "Xenopus (Silurana)
tropicalis" [GO:0000076 "DNA replication checkpoint" evidence=ISS]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0004518 "nuclease activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0017108 "5'-flap endonuclease activity" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=ISS] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISS] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISS]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0000729 GO:GO:0017108 GO:GO:0000076
GO:GO:0043139 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 OMA:EHESLCH EMBL:AAMC01051984
EMBL:AAMC01051985 EMBL:AAMC01051986 Ensembl:ENSXETT00000016310
Uniprot:F6QXW0
Length = 1048
Score = 137 (53.3 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 664 PNRPMFFYVQMGQEEISASGTS----YLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYE 719
P+ P+ F + E+I A T N EA V + FL++G PS IG+I PY
Sbjct: 883 PSNPVCF---LNTEKIPALETEEKGGISNWIEAKLVFCLTKLFLKAGCRPSDIGIIAPYR 939
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
Q I NY + A +EV +VD +QGR+K II+S VRSN
Sbjct: 940 QQLKVISNYFNSLSA------SAVEVNTVDKYQGRDKSVIIVSFVRSN 981
Score = 79 (32.9 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYE 640
L+ C G V G+++SLF+RL ++L VQYRM+ + + YE
Sbjct: 780 LIHHQCFKGCVKSVSLVRELGMSESLFKRLERNQEAVVQLTVQYRMNSQIMALSNKLVYE 839
Query: 641 GTLQ 644
G L+
Sbjct: 840 GRLE 843
Score = 72 (30.4 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 372 VQMVRNTLP---RRFGAPGLPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIV 426
VQ + + LP + A L LN Q A+K VL + +LI G PGTGKT T +V
Sbjct: 605 VQHLSSVLPSDAKDIVANILKGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLV 663
>UNIPROTKB|F1MKC7 [details] [associations]
symbol:Bt.110099 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR011990 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 Gene3D:1.25.40.10 OMA:YRVALLY
GeneTree:ENSGT00550000074391 EMBL:DAAA02049790 EMBL:DAAA02049791
EMBL:DAAA02049792 EMBL:DAAA02049793 EMBL:DAAA02049794
EMBL:DAAA02049795 EMBL:DAAA02049796 EMBL:DAAA02049797
EMBL:DAAA02049798 EMBL:DAAA02049799 IPI:IPI00698970
Ensembl:ENSBTAT00000006233 Uniprot:F1MKC7
Length = 1941
Score = 199 (75.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 68/239 (28%), Positives = 108/239 (45%)
Query: 552 FRQVLIDESTQATEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 609
F +L+DE+ QA E E ++PL L + +VVL GDH QL P + + A L SL +R
Sbjct: 793 FTHILLDEAAQAMECETIMPLALATRHTRVVLAGDHMQLSPFVYSEFARERNLHVSLLDR 852
Query: 610 LV--LLGLKPIRLQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPN 665
L P R+ + YR H ++ + S FYEG L + +Q + +F
Sbjct: 853 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM----ASGKQPAHKEF------ 902
Query: 666 RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYE 719
P+ F+ G++ + T++ N E V + V R V IGV+TPY
Sbjct: 903 YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYA 962
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778
Q I LR++ ++ V V + QG++ + LS VR+ +++ K
Sbjct: 963 DQVFRI------RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIK 1015
Score = 41 (19.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 475 PVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQG-ELSSSDEKKYKALKRATEREIS 529
P + +T H + + + K L+ Q LK + S+ D Y +K T+R ++
Sbjct: 465 PADEITRHIGILNFNEPLKIHLNGQQMLKGIKNYSQSTKDCSNYGKIK--TKRTLT 518
>UNIPROTKB|Q886X0 [details] [associations]
symbol:PSPTO_1455 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG1112
InterPro:IPR024402 Pfam:PF10881 RefSeq:NP_791281.1
ProteinModelPortal:Q886X0 GeneID:1183092 KEGG:pst:PSPTO_1455
PATRIC:19994154 HOGENOM:HOG000273296 OMA:HYRCHPK
ProtClustDB:CLSK879830 BioCyc:PSYR223283:GJIX-1482-MONOMER
Uniprot:Q886X0
Length = 758
Score = 134 (52.2 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 42/101 (41%), Positives = 55/101 (54%)
Query: 373 QMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432
Q V+ P F P LN SQ+ AV+ ISLI+GPPGTGKT T I+ ++ Q
Sbjct: 14 QPVQQDSPGNFIFPF--GLNESQLKAVEQAFSSQISLIEGPPGTGKTQTILNIIANILLQ 71
Query: 433 GQGQVLVCAPSNVAVDQLAEKISATGLK--VVRLCAK-SRE 470
G+ V V + +N AV + EK+ GL V RL K +RE
Sbjct: 72 GK-TVAVVSNNNAAVKNVYEKLGKCGLDYLVARLGNKENRE 111
Score = 72 (30.4 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 31/100 (31%), Positives = 50/100 (50%)
Query: 555 VLIDESTQATEPECLIPLVLG---AKQVVLVGDHCQLG--PVIMCKKAARAGL---AQSL 606
V+IDE++Q + ++P VL AK +++VGD QL P + +A SL
Sbjct: 336 VIIDEASQ----QDIVPGVLALSCAKNLIIVGDRKQLAHIPEKLGLEAPAPWYDCETYSL 391
Query: 607 FERLV-LLGLK-PIRL-QVQYRMHPSLSEFPSNSFYEGTL 643
+ V + G P+ L + YR HP + +F + FY+ L
Sbjct: 392 LDSCVGVFGDSIPMTLLKEHYRCHPRIIQFCNQQFYDNQL 431
Score = 46 (21.3 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 747 SVDSFQGREKDYIILSCV 764
+V FQGRE D I+ S V
Sbjct: 509 TVHKFQGRECDEIVFSTV 526
>UNIPROTKB|Q2KFA1 [details] [associations]
symbol:MGCH7_ch7g785 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CM000230 Uniprot:Q2KFA1
Length = 852
Score = 126 (49.4 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 60/220 (27%), Positives = 97/220 (44%)
Query: 441 APSN-VAVDQLAEKISATGLKVVRLCAKSR---EAVSSPVEHLTLH-YQVRHLDTSEKSE 495
+PSN VAVD ++ KV A R + ++ ++ L ++ R + SE E
Sbjct: 413 SPSNAVAVDPTTAFLTMAA-KVADNTAGDRFKSDCLAPALDQLAFRRFEARKEEYSELEE 471
Query: 496 LHKLQQLKDEQGELSSSDEKKYKALKRATE---REISQSADVICCTCVGAGDPRLANFRF 552
+ L+Q ++ E S+ + L+ ATE ++ + D + T + A LA+ RF
Sbjct: 472 V--LEQYLQDKIEPSTM-----RILRAATENLYKDTLEEVDFLAATPIAAAS--LADGRF 522
Query: 553 RQ--VLIDESTQATEPECLIPLVLGAKQV-VLVGDHCQLGPVIMCKKAA-RAGLAQSLFE 608
+ VL DE+ A E LIP+ + + GD Q G + K L S+ E
Sbjct: 523 KPDIVLFDEAPHARELANLIPIAHFSPMAWIFTGDFRQTGCYVGSDKNPWEIQLKMSVME 582
Query: 609 RLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVT 648
R G L + +R +L + PSN FY+ + G T
Sbjct: 583 RAHYAGATTHELLMNHRAFATLHQMPSNLFYDAKMVTGHT 622
Score = 62 (26.9 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 715 ITPYEGQRAYIVNYMSR-NGALRQQLYKEIEVASVDSFQGREKDYIILSCVR 765
+T Y+ + ++ G + + +EV SVD+ QG E D++ VR
Sbjct: 714 VTQYKRAAGDLCRELAEAQGVPAKTMLTRLEVRSVDTVQGHEADFVFFDLVR 765
Score = 51 (23.0 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 377 NTLPRRFGAPGLPELNASQVFAVKSVLQR-P--ISLIQGPPGTGKT 419
+TLP + + N Q+ +LQR P + +I G PG GKT
Sbjct: 268 HTLPPNLSKM-VAKANPQQLATYTELLQRLPCGVGIIPGGPGGGKT 312
>UNIPROTKB|F8VR31 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 EMBL:AL136233
HGNC:HGNC:2939 IPI:IPI01022599 ProteinModelPortal:F8VR31
Ensembl:ENST00000551118 UCSC:uc001jog.2 ArrayExpress:F8VR31
Bgee:F8VR31 Uniprot:F8VR31
Length = 807
Score = 136 (52.9 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 32/92 (34%), Positives = 54/92 (58%)
Query: 677 EEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALR 736
E++ G S N TEA + + + F+++G PS IG+I PY Q I + ++R+ +
Sbjct: 666 EQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARSIGM- 722
Query: 737 QQLYKEIEVASVDSFQGREKDYIILSCVRSNE 768
+EV +VD +QGR+K +++S VRSN+
Sbjct: 723 ------VEVNTVDKYQGRDKSIVLVSFVRSNK 748
Score = 45 (20.9 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 237 CLNMMKESQSKDN 249
CL + ESQSKDN
Sbjct: 445 CLMLTLESQSKDN 457
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 779 742 0.00088 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 170
No. of states in DFA: 622 (66 KB)
Total size of DFA: 382 KB (2189 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.06u 0.22s 66.28t Elapsed: 00:00:03
Total cpu time: 66.11u 0.22s 66.33t Elapsed: 00:00:03
Start: Fri May 10 17:07:38 2013 End: Fri May 10 17:07:41 2013
WARNINGS ISSUED: 1