Query 004009
Match_columns 779
No_of_seqs 470 out of 2555
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wjy_A Regulator of nonsense t 100.0 5E-128 2E-132 1158.2 61.4 636 138-778 2-742 (800)
2 2xzl_A ATP-dependent helicase 100.0 1E-126 5E-131 1146.8 59.3 635 137-778 6-744 (802)
3 2gk6_A Regulator of nonsense t 100.0 7.7E-85 2.6E-89 768.4 50.1 536 240-778 29-566 (624)
4 4b3f_X DNA-binding protein smu 100.0 1.3E-77 4.5E-82 709.8 48.5 512 249-778 47-592 (646)
5 3lfu_A DNA helicase II; SF1 he 99.9 6.9E-25 2.3E-29 258.4 20.6 315 389-733 8-371 (647)
6 3e1s_A Exodeoxyribonuclease V, 99.9 1.1E-22 3.9E-27 236.6 19.3 225 389-731 188-420 (574)
7 3upu_A ATP-dependent DNA helic 99.9 1.2E-21 4.2E-26 222.3 22.6 244 386-731 21-274 (459)
8 1pjr_A PCRA; DNA repair, DNA r 99.9 3.8E-22 1.3E-26 238.7 18.7 311 389-733 10-375 (724)
9 1uaa_A REP helicase, protein ( 99.9 1.5E-21 5.2E-26 231.6 20.4 310 390-733 2-366 (673)
10 1w36_D RECD, exodeoxyribonucle 99.8 5.8E-19 2E-23 207.1 13.5 199 392-642 151-378 (608)
11 3vkw_A Replicase large subunit 99.7 1.1E-16 3.7E-21 179.1 17.0 229 405-768 161-392 (446)
12 3u4q_A ATP-dependent helicase/ 99.6 1.4E-15 4.7E-20 191.6 15.7 175 551-734 400-607 (1232)
13 1w36_B RECB, exodeoxyribonucle 99.4 4.1E-13 1.4E-17 168.5 14.5 172 551-733 377-575 (1180)
14 3u4q_B ATP-dependent helicase/ 99.4 2.5E-12 8.6E-17 161.4 17.3 148 552-733 202-367 (1166)
15 2fz4_A DNA repair protein RAD2 98.8 6.6E-08 2.3E-12 99.8 14.0 74 389-466 92-166 (237)
16 1rif_A DAR protein, DNA helica 98.8 3.8E-08 1.3E-12 103.8 12.3 69 390-458 113-181 (282)
17 3b6e_A Interferon-induced heli 98.7 1.4E-08 4.9E-13 101.4 8.5 68 389-456 32-105 (216)
18 2gxq_A Heat resistant RNA depe 98.7 5.2E-08 1.8E-12 97.1 12.0 70 388-457 21-95 (207)
19 3dmn_A Putative DNA helicase; 98.7 6.6E-08 2.3E-12 95.2 10.7 117 621-766 2-125 (174)
20 1vec_A ATP-dependent RNA helic 98.7 3.7E-08 1.3E-12 98.1 8.2 70 388-457 23-94 (206)
21 1t6n_A Probable ATP-dependent 98.6 1.9E-07 6.4E-12 94.2 12.8 70 388-457 34-105 (220)
22 1qde_A EIF4A, translation init 98.6 1.2E-07 4.1E-12 95.8 11.1 69 389-457 35-105 (224)
23 2pl3_A Probable ATP-dependent 98.6 1.8E-07 6.3E-12 95.5 12.4 71 388-458 45-121 (236)
24 3iuy_A Probable ATP-dependent 98.6 1.2E-07 4E-12 96.4 10.7 69 389-457 41-117 (228)
25 1wrb_A DJVLGB; RNA helicase, D 98.6 5.6E-07 1.9E-11 92.9 15.3 71 387-457 42-123 (253)
26 3ber_A Probable ATP-dependent 98.6 3.1E-07 1E-11 95.3 13.2 70 388-457 63-134 (249)
27 2oca_A DAR protein, ATP-depend 98.6 2.8E-07 9.7E-12 104.9 12.9 68 390-457 113-180 (510)
28 3bor_A Human initiation factor 98.6 1.9E-07 6.3E-12 95.9 10.2 69 389-457 51-121 (237)
29 1hv8_A Putative ATP-dependent 98.5 2.2E-07 7.4E-12 100.0 10.9 69 389-457 27-97 (367)
30 1wp9_A ATP-dependent RNA helic 98.5 3.4E-07 1.2E-11 101.5 12.7 67 390-457 9-75 (494)
31 3fe2_A Probable ATP-dependent 98.5 4.7E-07 1.6E-11 93.1 12.7 70 388-457 49-125 (242)
32 3ly5_A ATP-dependent RNA helic 98.5 3.9E-07 1.3E-11 95.2 12.2 70 388-457 74-149 (262)
33 2oxc_A Probable ATP-dependent 98.5 3.2E-07 1.1E-11 93.6 10.2 70 388-457 44-115 (230)
34 1q0u_A Bstdead; DEAD protein, 98.5 3.2E-07 1.1E-11 92.6 10.0 69 389-457 25-95 (219)
35 2z0m_A 337AA long hypothetical 98.5 5E-07 1.7E-11 96.1 11.9 66 388-457 14-79 (337)
36 3dkp_A Probable ATP-dependent 98.5 3.4E-07 1.2E-11 94.0 9.3 70 388-457 49-121 (245)
37 1s2m_A Putative ATP-dependent 98.4 5E-07 1.7E-11 99.0 10.8 70 388-457 41-112 (400)
38 1fuu_A Yeast initiation factor 98.4 6E-07 2E-11 97.8 11.2 69 389-457 42-112 (394)
39 2fwr_A DNA repair protein RAD2 98.4 5.4E-07 1.8E-11 101.6 11.0 73 389-465 92-165 (472)
40 1xti_A Probable ATP-dependent 98.4 9E-07 3.1E-11 96.4 12.4 69 389-457 29-99 (391)
41 3oiy_A Reverse gyrase helicase 98.4 6.9E-07 2.4E-11 98.9 11.0 74 390-464 21-97 (414)
42 3h1t_A Type I site-specific re 98.4 5.1E-07 1.7E-11 105.0 9.7 69 389-457 177-259 (590)
43 3pey_A ATP-dependent RNA helic 98.4 1.3E-06 4.3E-11 95.0 11.8 70 388-457 25-98 (395)
44 3tbk_A RIG-I helicase domain; 98.4 9.3E-07 3.2E-11 100.7 11.2 76 390-465 4-87 (555)
45 4a2p_A RIG-I, retinoic acid in 98.4 1.6E-06 5.4E-11 99.1 12.8 76 389-464 6-89 (556)
46 2j0s_A ATP-dependent RNA helic 98.4 1.6E-06 5.4E-11 95.4 12.2 69 389-457 58-128 (410)
47 2i4i_A ATP-dependent RNA helic 98.3 2.5E-06 8.6E-11 93.8 13.1 69 389-457 36-124 (417)
48 3eiq_A Eukaryotic initiation f 98.3 1.1E-06 3.7E-11 96.5 10.1 69 389-457 61-131 (414)
49 2ykg_A Probable ATP-dependent 98.3 3.3E-06 1.1E-10 99.8 12.6 77 388-464 11-95 (696)
50 3fht_A ATP-dependent RNA helic 98.2 3.2E-06 1.1E-10 92.5 11.3 70 388-457 45-118 (412)
51 4a2q_A RIG-I, retinoic acid in 98.2 2.9E-06 1E-10 102.4 11.3 79 388-466 246-332 (797)
52 2va8_A SSO2462, SKI2-type heli 98.2 2.4E-06 8.2E-11 101.7 10.3 68 388-455 28-96 (715)
53 4gl2_A Interferon-induced heli 98.2 9.3E-07 3.2E-11 104.6 6.2 75 390-464 7-90 (699)
54 1gm5_A RECG; helicase, replica 98.2 6E-06 2E-10 99.2 13.1 67 390-457 368-440 (780)
55 2zpa_A Uncharacterized protein 98.1 6.4E-06 2.2E-10 96.5 11.4 157 390-639 175-335 (671)
56 2db3_A ATP-dependent RNA helic 98.1 1.3E-05 4.3E-10 89.8 13.3 69 389-457 77-152 (434)
57 3l9o_A ATP-dependent RNA helic 98.1 9.4E-06 3.2E-10 101.1 13.3 71 389-460 183-253 (1108)
58 3fmo_B ATP-dependent RNA helic 98.1 7.3E-06 2.5E-10 87.4 10.6 70 388-457 112-185 (300)
59 2p6r_A Afuhel308 helicase; pro 98.1 3.1E-06 1.1E-10 100.6 8.0 67 388-455 23-89 (702)
60 4a2w_A RIG-I, retinoic acid in 98.1 5E-06 1.7E-10 102.1 10.0 78 389-466 247-332 (936)
61 2zj8_A DNA helicase, putative 98.1 3.1E-06 1.1E-10 100.9 7.2 68 388-456 21-90 (720)
62 3i5x_A ATP-dependent RNA helic 98.1 1.3E-05 4.3E-10 92.5 11.9 69 388-456 92-168 (563)
63 3fmp_B ATP-dependent RNA helic 98.0 9.3E-06 3.2E-10 91.7 9.7 70 388-457 112-185 (479)
64 3sqw_A ATP-dependent RNA helic 98.0 1.7E-05 5.9E-10 92.0 12.0 70 388-457 41-118 (579)
65 3fho_A ATP-dependent RNA helic 98.0 2.4E-06 8.4E-11 97.7 4.4 70 388-457 139-212 (508)
66 4ddu_A Reverse gyrase; topoiso 98.0 1.3E-05 4.4E-10 99.9 11.1 67 390-457 78-144 (1104)
67 2xgj_A ATP-dependent RNA helic 98.0 1.2E-05 4.2E-10 99.2 10.7 67 390-457 86-152 (1010)
68 4a4z_A Antiviral helicase SKI2 97.9 4.3E-05 1.5E-09 94.3 12.9 67 390-457 39-105 (997)
69 3dmq_A RNA polymerase-associat 97.9 2.9E-05 9.8E-10 95.7 10.7 149 389-587 152-318 (968)
70 2eyq_A TRCF, transcription-rep 97.8 9.6E-05 3.3E-09 92.5 14.8 67 390-457 603-675 (1151)
71 1oyw_A RECQ helicase, ATP-depe 97.8 6.1E-05 2.1E-09 86.5 11.1 73 389-465 24-96 (523)
72 1z63_A Helicase of the SNF2/RA 97.8 4.8E-05 1.6E-09 86.2 9.8 141 389-587 36-189 (500)
73 1gku_B Reverse gyrase, TOP-RG; 97.7 6.1E-05 2.1E-09 93.6 9.8 65 391-457 58-122 (1054)
74 2l8b_A Protein TRAI, DNA helic 97.7 0.00018 6.1E-09 70.9 10.9 63 392-454 36-100 (189)
75 2v1x_A ATP-dependent DNA helic 97.7 5.9E-05 2E-09 88.0 8.7 74 389-466 43-116 (591)
76 2vl7_A XPD; helicase, unknown 97.7 4.9E-05 1.7E-09 87.7 7.5 73 391-467 8-84 (540)
77 4f92_B U5 small nuclear ribonu 97.7 0.00011 3.8E-09 95.1 11.5 69 388-456 924-994 (1724)
78 3crv_A XPD/RAD3 related DNA he 97.6 6.8E-05 2.3E-09 86.7 8.3 72 391-466 4-83 (551)
79 1z3i_X Similar to RAD54-like; 97.5 0.00045 1.5E-08 81.4 12.5 154 390-587 55-232 (644)
80 3llm_A ATP-dependent RNA helic 97.4 0.00027 9.2E-09 72.1 8.3 66 391-456 62-131 (235)
81 2w00_A HSDR, R.ECOR124I; ATP-b 97.4 0.00015 5.2E-09 89.5 7.5 67 390-457 271-353 (1038)
82 4f92_B U5 small nuclear ribonu 97.3 0.00044 1.5E-08 89.6 10.9 70 387-456 76-156 (1724)
83 3mwy_W Chromo domain-containin 97.3 0.00033 1.1E-08 84.5 7.8 159 389-587 235-407 (800)
84 3rc3_A ATP-dependent RNA helic 97.3 0.00047 1.6E-08 81.5 8.9 59 401-464 151-209 (677)
85 2z83_A Helicase/nucleoside tri 97.2 0.00032 1.1E-08 79.1 6.7 51 404-455 20-71 (459)
86 2wv9_A Flavivirin protease NS2 97.2 0.00049 1.7E-08 81.4 8.2 54 404-458 240-294 (673)
87 3kl4_A SRP54, signal recogniti 97.1 0.0031 1.1E-07 70.5 13.4 53 407-460 99-154 (433)
88 3dm5_A SRP54, signal recogniti 97.1 0.0034 1.2E-07 70.4 13.2 54 407-461 102-158 (443)
89 3ec2_A DNA replication protein 97.1 0.00086 2.9E-08 65.2 7.4 48 392-439 16-72 (180)
90 2j9r_A Thymidine kinase; TK1, 97.1 0.0019 6.5E-08 65.5 10.0 37 406-443 29-65 (214)
91 2jlq_A Serine protease subunit 97.0 0.00063 2.2E-08 76.5 6.9 56 399-455 12-69 (451)
92 2v6i_A RNA helicase; membrane, 97.0 0.001 3.5E-08 74.4 8.1 50 405-455 2-52 (431)
93 2whx_A Serine protease/ntpase/ 96.9 0.0005 1.7E-08 80.6 4.3 57 399-456 180-237 (618)
94 3o8b_A HCV NS3 protease/helica 96.9 0.00045 1.5E-08 81.3 3.8 50 404-457 231-280 (666)
95 1w4r_A Thymidine kinase; type 96.8 0.0023 7.7E-08 64.0 7.4 38 405-443 20-57 (195)
96 1g5t_A COB(I)alamin adenosyltr 96.7 0.022 7.4E-07 56.9 13.6 57 405-465 28-88 (196)
97 2w58_A DNAI, primosome compone 96.4 0.0042 1.4E-07 61.3 6.8 34 406-440 55-88 (202)
98 3bos_A Putative DNA replicatio 96.3 0.0089 3E-07 59.7 8.8 49 391-440 35-86 (242)
99 3te6_A Regulatory protein SIR3 96.3 0.0032 1.1E-07 67.7 5.2 28 405-432 45-72 (318)
100 1tf5_A Preprotein translocase 96.2 0.024 8.1E-07 67.9 12.4 64 390-456 83-146 (844)
101 2orv_A Thymidine kinase; TP4A 96.1 0.011 3.8E-07 60.5 8.2 38 405-443 19-56 (234)
102 2xau_A PRE-mRNA-splicing facto 96.1 0.0071 2.4E-07 72.7 7.8 64 393-456 96-162 (773)
103 1jbk_A CLPB protein; beta barr 96.1 0.006 2E-07 58.3 5.6 39 393-431 28-69 (195)
104 2dr3_A UPF0273 protein PH0284; 96.0 0.0079 2.7E-07 60.7 6.6 52 405-458 23-74 (247)
105 3e2i_A Thymidine kinase; Zn-bi 96.0 0.02 7E-07 58.0 9.3 38 406-444 29-66 (219)
106 2fsf_A Preprotein translocase 95.9 0.02 7E-07 68.4 10.4 64 390-456 74-137 (853)
107 2orw_A Thymidine kinase; TMTK, 95.9 0.007 2.4E-07 59.6 5.3 38 405-443 3-40 (184)
108 2zts_A Putative uncharacterize 95.9 0.0091 3.1E-07 60.3 6.1 53 405-458 30-82 (251)
109 1nkt_A Preprotein translocase 95.8 0.013 4.4E-07 70.3 8.1 64 390-456 111-174 (922)
110 2ipc_A Preprotein translocase 95.8 0.015 5E-07 69.9 8.4 64 390-456 79-142 (997)
111 1l8q_A Chromosomal replication 95.8 0.018 6.1E-07 61.2 8.4 35 406-441 38-72 (324)
112 1yks_A Genome polyprotein [con 95.8 0.0054 1.8E-07 68.7 4.4 54 404-458 7-61 (440)
113 2p65_A Hypothetical protein PF 95.8 0.0075 2.6E-07 57.6 4.8 39 393-431 28-69 (187)
114 4a15_A XPD helicase, ATP-depen 95.7 0.018 6.3E-07 67.3 8.8 75 392-467 5-88 (620)
115 2chg_A Replication factor C sm 95.7 0.01 3.5E-07 58.1 5.6 39 392-430 22-63 (226)
116 2kjq_A DNAA-related protein; s 95.6 0.011 3.6E-07 56.2 4.9 42 389-431 21-62 (149)
117 3h4m_A Proteasome-activating n 95.5 0.012 4E-07 61.2 5.2 22 406-427 52-73 (285)
118 1vma_A Cell division protein F 95.4 0.03 1E-06 59.8 8.4 54 407-461 106-162 (306)
119 4b4t_K 26S protease regulatory 95.4 0.0076 2.6E-07 67.4 3.9 22 408-429 209-230 (428)
120 2v1u_A Cell division control p 95.4 0.016 5.4E-07 62.4 6.3 41 392-432 24-71 (387)
121 2b8t_A Thymidine kinase; deoxy 95.4 0.013 4.4E-07 59.8 5.1 37 405-442 12-48 (223)
122 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.022 7.4E-07 56.7 6.7 51 405-457 23-73 (235)
123 2qgz_A Helicase loader, putati 95.4 0.019 6.5E-07 61.2 6.7 35 406-441 153-188 (308)
124 3b9p_A CG5977-PA, isoform A; A 95.3 0.013 4.5E-07 61.3 5.2 22 406-427 55-76 (297)
125 1njg_A DNA polymerase III subu 95.3 0.017 5.7E-07 57.1 5.7 39 392-430 28-70 (250)
126 1tue_A Replication protein E1; 95.3 0.008 2.7E-07 60.6 3.0 23 407-429 60-82 (212)
127 2r2a_A Uncharacterized protein 95.3 0.0086 2.9E-07 59.9 3.2 24 406-429 6-29 (199)
128 3n70_A Transport activator; si 95.2 0.015 5.1E-07 54.6 4.7 22 405-426 24-45 (145)
129 1ofh_A ATP-dependent HSL prote 95.1 0.015 5.2E-07 60.7 4.9 25 405-429 50-74 (310)
130 3hws_A ATP-dependent CLP prote 95.1 0.016 5.5E-07 62.8 5.1 25 405-429 51-75 (363)
131 3eie_A Vacuolar protein sortin 95.1 0.021 7E-07 61.0 5.8 23 406-428 52-74 (322)
132 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.022 7.4E-07 58.1 5.7 23 406-428 40-62 (262)
133 2qby_B CDC6 homolog 3, cell di 95.0 0.028 9.6E-07 60.6 6.7 40 393-432 26-72 (384)
134 3t15_A Ribulose bisphosphate c 95.0 0.013 4.4E-07 61.9 3.7 24 406-429 37-60 (293)
135 3syl_A Protein CBBX; photosynt 95.0 0.022 7.5E-07 59.8 5.5 26 407-432 69-94 (309)
136 1fnn_A CDC6P, cell division co 95.0 0.021 7.1E-07 61.6 5.5 38 393-430 23-69 (389)
137 2qby_A CDC6 homolog 1, cell di 94.9 0.027 9.2E-07 60.4 6.2 40 393-432 26-72 (386)
138 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.085 2.9E-06 56.4 10.0 24 406-429 46-69 (322)
139 2r8r_A Sensor protein; KDPD, P 94.9 0.023 7.8E-07 58.1 5.2 32 408-440 9-40 (228)
140 1xx6_A Thymidine kinase; NESG, 94.9 0.023 7.9E-07 56.4 5.1 37 406-443 9-45 (191)
141 3co5_A Putative two-component 94.8 0.011 3.7E-07 55.5 2.3 21 405-425 27-47 (143)
142 4b4t_M 26S protease regulatory 94.7 0.015 5E-07 65.1 3.5 22 407-428 217-238 (434)
143 2r62_A Cell division protease 94.7 0.0093 3.2E-07 61.4 1.8 22 407-428 46-67 (268)
144 3bh0_A DNAB-like replicative h 94.7 0.03 1E-06 59.8 5.7 50 405-456 68-117 (315)
145 1iqp_A RFCS; clamp loader, ext 94.6 0.026 8.8E-07 59.3 5.0 39 392-430 30-71 (327)
146 4fcw_A Chaperone protein CLPB; 94.6 0.023 7.9E-07 59.6 4.4 25 406-430 48-72 (311)
147 4b4t_J 26S protease regulatory 94.5 0.018 6.1E-07 63.7 3.5 22 407-428 184-205 (405)
148 3u61_B DNA polymerase accessor 94.5 0.032 1.1E-06 59.1 5.4 50 391-444 30-83 (324)
149 1lv7_A FTSH; alpha/beta domain 94.5 0.031 1.1E-06 57.3 5.0 23 406-428 46-68 (257)
150 4b4t_L 26S protease subunit RP 94.5 0.018 6.3E-07 64.4 3.5 22 407-428 217-238 (437)
151 3uk6_A RUVB-like 2; hexameric 94.4 0.036 1.2E-06 59.6 5.7 24 406-429 71-94 (368)
152 1sxj_A Activator 1 95 kDa subu 94.4 0.03 1E-06 63.9 5.2 24 406-429 78-101 (516)
153 1c4o_A DNA nucleotide excision 94.4 0.068 2.3E-06 63.0 8.3 64 390-457 8-76 (664)
154 2r44_A Uncharacterized protein 94.4 0.029 9.9E-07 59.7 4.7 35 394-428 34-69 (331)
155 1sxj_C Activator 1 40 kDa subu 94.3 0.038 1.3E-06 59.2 5.6 39 392-430 30-71 (340)
156 2z4s_A Chromosomal replication 94.3 0.078 2.7E-06 59.3 8.3 37 406-442 131-168 (440)
157 3cf0_A Transitional endoplasmi 94.3 0.035 1.2E-06 58.7 5.1 23 406-428 50-72 (301)
158 2j37_W Signal recognition part 94.3 0.063 2.1E-06 61.2 7.4 56 407-463 103-161 (504)
159 3hr8_A Protein RECA; alpha and 94.2 0.03 1E-06 61.0 4.4 48 406-454 62-109 (356)
160 3pfi_A Holliday junction ATP-d 94.2 0.031 1.1E-06 59.5 4.4 22 406-427 56-77 (338)
161 1in4_A RUVB, holliday junction 94.1 0.036 1.2E-06 59.5 4.9 24 406-429 52-75 (334)
162 1j8m_F SRP54, signal recogniti 94.1 0.065 2.2E-06 56.8 6.7 54 407-461 100-156 (297)
163 4b4t_I 26S protease regulatory 94.1 0.025 8.6E-07 63.0 3.6 22 407-428 218-239 (437)
164 2px0_A Flagellar biosynthesis 94.1 0.045 1.5E-06 58.0 5.5 36 406-441 106-141 (296)
165 1nlf_A Regulatory protein REPA 94.1 0.053 1.8E-06 56.4 5.9 50 405-456 30-89 (279)
166 3io5_A Recombination and repai 94.1 0.027 9.2E-07 60.4 3.6 41 405-445 28-69 (333)
167 1d2n_A N-ethylmaleimide-sensit 94.0 0.027 9.3E-07 58.2 3.5 23 406-428 65-87 (272)
168 3kb2_A SPBC2 prophage-derived 94.0 0.03 1E-06 53.0 3.6 22 407-428 3-24 (173)
169 2chq_A Replication factor C sm 94.0 0.042 1.4E-06 57.5 5.0 39 392-430 22-63 (319)
170 1um8_A ATP-dependent CLP prote 94.0 0.041 1.4E-06 59.8 5.1 25 405-429 72-96 (376)
171 2bjv_A PSP operon transcriptio 94.0 0.038 1.3E-06 56.8 4.5 23 405-427 29-51 (265)
172 3d8b_A Fidgetin-like protein 1 94.0 0.043 1.5E-06 59.5 5.1 23 406-428 118-140 (357)
173 1cr0_A DNA primase/helicase; R 93.9 0.066 2.2E-06 56.1 6.2 50 405-455 35-84 (296)
174 3vfd_A Spastin; ATPase, microt 93.9 0.047 1.6E-06 59.8 5.2 36 392-427 120-170 (389)
175 2r6a_A DNAB helicase, replicat 93.8 0.062 2.1E-06 60.3 6.2 50 405-455 203-252 (454)
176 1sxj_D Activator 1 41 kDa subu 93.8 0.034 1.2E-06 59.2 3.9 37 394-430 44-83 (353)
177 2z0h_A DTMP kinase, thymidylat 93.8 0.084 2.9E-06 51.2 6.4 31 407-438 2-32 (197)
178 2xxa_A Signal recognition part 93.8 0.086 2.9E-06 58.9 7.2 54 407-461 102-159 (433)
179 1sxj_E Activator 1 40 kDa subu 93.8 0.035 1.2E-06 59.4 3.9 48 392-439 19-70 (354)
180 1xjc_A MOBB protein homolog; s 93.7 0.068 2.3E-06 52.0 5.4 39 406-445 5-43 (169)
181 4b4t_H 26S protease regulatory 93.7 0.027 9.3E-07 63.3 2.9 22 407-428 245-266 (467)
182 1hqc_A RUVB; extended AAA-ATPa 93.6 0.035 1.2E-06 58.6 3.5 24 406-429 39-62 (324)
183 1qhx_A CPT, protein (chloramph 93.6 0.035 1.2E-06 53.1 3.2 23 406-428 4-26 (178)
184 1jr3_A DNA polymerase III subu 93.6 0.066 2.3E-06 57.4 5.7 38 392-429 21-62 (373)
185 2zr9_A Protein RECA, recombina 93.5 0.064 2.2E-06 58.2 5.4 39 405-444 61-99 (349)
186 2zan_A Vacuolar protein sortin 93.5 0.057 1.9E-06 60.5 5.1 24 406-429 168-191 (444)
187 1u94_A RECA protein, recombina 93.4 0.07 2.4E-06 58.1 5.5 38 405-443 63-100 (356)
188 2q6t_A DNAB replication FORK h 93.4 0.082 2.8E-06 59.1 6.2 51 405-456 200-250 (444)
189 3b9q_A Chloroplast SRP recepto 93.4 0.17 5.8E-06 53.7 8.4 46 406-452 101-149 (302)
190 4a1f_A DNAB helicase, replicat 93.4 0.073 2.5E-06 57.6 5.6 50 405-456 46-95 (338)
191 2c9o_A RUVB-like 1; hexameric 93.4 0.07 2.4E-06 59.8 5.7 24 406-429 64-87 (456)
192 1nks_A Adenylate kinase; therm 93.3 0.044 1.5E-06 52.8 3.5 33 407-440 3-35 (194)
193 1zu4_A FTSY; GTPase, signal re 93.3 0.069 2.4E-06 57.2 5.3 35 406-441 106-140 (320)
194 1kht_A Adenylate kinase; phosp 93.3 0.047 1.6E-06 52.6 3.6 25 406-430 4-28 (192)
195 2qp9_X Vacuolar protein sortin 93.3 0.042 1.4E-06 59.6 3.5 23 407-429 86-108 (355)
196 1sxj_B Activator 1 37 kDa subu 93.3 0.069 2.3E-06 55.9 5.1 38 393-430 27-67 (323)
197 1ly1_A Polynucleotide kinase; 93.3 0.044 1.5E-06 52.2 3.3 21 407-427 4-24 (181)
198 1p9r_A General secretion pathw 93.3 0.076 2.6E-06 59.1 5.7 49 391-440 151-201 (418)
199 1w5s_A Origin recognition comp 93.3 0.069 2.4E-06 58.1 5.2 26 406-431 51-78 (412)
200 3trf_A Shikimate kinase, SK; a 93.2 0.055 1.9E-06 52.2 4.0 25 405-429 5-29 (185)
201 2v3c_C SRP54, signal recogniti 93.2 0.045 1.5E-06 61.2 3.7 34 407-441 101-134 (432)
202 3lw7_A Adenylate kinase relate 93.2 0.044 1.5E-06 51.6 3.1 20 406-425 2-21 (179)
203 1q57_A DNA primase/helicase; d 93.2 0.065 2.2E-06 60.8 5.0 51 405-456 242-292 (503)
204 3pvs_A Replication-associated 93.1 0.066 2.3E-06 60.1 4.9 23 406-428 51-73 (447)
205 1g8p_A Magnesium-chelatase 38 93.1 0.039 1.3E-06 58.7 2.9 24 405-428 45-68 (350)
206 2cvh_A DNA repair and recombin 93.1 0.087 3E-06 51.9 5.3 34 405-442 20-53 (220)
207 1n0w_A DNA repair protein RAD5 93.0 0.059 2E-06 54.1 4.0 25 405-429 24-48 (243)
208 2x8a_A Nuclear valosin-contain 93.0 0.043 1.5E-06 57.4 3.0 20 408-427 47-66 (274)
209 2rhm_A Putative kinase; P-loop 93.0 0.054 1.8E-06 52.4 3.5 24 406-429 6-29 (193)
210 2yvu_A Probable adenylyl-sulfa 93.0 0.095 3.2E-06 50.7 5.3 34 406-440 14-47 (186)
211 1xp8_A RECA protein, recombina 92.9 0.087 3E-06 57.6 5.4 39 405-444 74-112 (366)
212 2ehv_A Hypothetical protein PH 92.9 0.18 6E-06 50.7 7.4 36 405-441 30-66 (251)
213 1ixz_A ATP-dependent metallopr 92.9 0.046 1.6E-06 55.8 3.0 21 408-428 52-72 (254)
214 1gvn_B Zeta; postsegregational 92.9 0.082 2.8E-06 55.6 5.0 22 407-428 35-56 (287)
215 2fna_A Conserved hypothetical 92.9 0.092 3.1E-06 55.5 5.3 36 393-429 19-54 (357)
216 2og2_A Putative signal recogni 92.8 0.22 7.6E-06 54.2 8.4 54 407-461 159-215 (359)
217 2plr_A DTMP kinase, probable t 92.8 0.062 2.1E-06 52.7 3.6 24 406-429 5-28 (213)
218 3cpe_A Terminase, DNA packagin 92.8 0.28 9.6E-06 56.9 9.8 67 390-456 163-230 (592)
219 3iij_A Coilin-interacting nucl 92.8 0.069 2.3E-06 51.4 3.9 25 405-429 11-35 (180)
220 3e70_C DPA, signal recognition 92.7 0.18 6E-06 54.3 7.4 55 406-461 130-187 (328)
221 2iyv_A Shikimate kinase, SK; t 92.7 0.072 2.5E-06 51.4 3.8 24 406-429 3-26 (184)
222 2z43_A DNA repair and recombin 92.6 0.068 2.3E-06 57.2 3.9 52 405-456 107-164 (324)
223 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.11 3.7E-06 53.6 5.3 34 406-440 5-38 (260)
224 1tev_A UMP-CMP kinase; ploop, 92.6 0.071 2.4E-06 51.4 3.6 23 406-428 4-26 (196)
225 1kag_A SKI, shikimate kinase I 92.5 0.066 2.3E-06 50.9 3.3 22 406-427 5-26 (173)
226 1u0j_A DNA replication protein 92.4 0.11 3.7E-06 54.3 5.0 39 390-428 83-127 (267)
227 3pxg_A Negative regulator of g 92.4 0.099 3.4E-06 58.9 5.1 38 393-430 186-226 (468)
228 3nbx_X ATPase RAVA; AAA+ ATPas 92.4 0.07 2.4E-06 60.8 3.9 26 403-428 39-64 (500)
229 3vaa_A Shikimate kinase, SK; s 92.4 0.077 2.6E-06 52.2 3.8 25 405-429 25-49 (199)
230 2d7d_A Uvrabc system protein B 92.4 0.31 1.1E-05 57.3 9.6 64 390-457 12-80 (661)
231 3cm0_A Adenylate kinase; ATP-b 92.4 0.076 2.6E-06 51.1 3.6 23 407-429 6-28 (186)
232 2o0j_A Terminase, DNA packagin 92.3 0.32 1.1E-05 53.5 8.9 67 390-456 163-230 (385)
233 2pbr_A DTMP kinase, thymidylat 92.3 0.2 7E-06 48.1 6.6 32 407-439 2-33 (195)
234 1via_A Shikimate kinase; struc 92.3 0.08 2.7E-06 50.7 3.7 23 407-429 6-28 (175)
235 3p32_A Probable GTPase RV1496/ 92.3 0.13 4.5E-06 55.6 5.8 36 406-442 80-115 (355)
236 2cdn_A Adenylate kinase; phosp 92.3 0.08 2.7E-06 52.0 3.6 23 407-429 22-44 (201)
237 2ze6_A Isopentenyl transferase 92.2 0.077 2.6E-06 54.7 3.6 23 407-429 3-25 (253)
238 2c95_A Adenylate kinase 1; tra 92.2 0.082 2.8E-06 51.2 3.7 25 405-429 9-33 (196)
239 2yhs_A FTSY, cell division pro 92.2 0.27 9.3E-06 55.7 8.3 45 407-452 295-342 (503)
240 3fb4_A Adenylate kinase; psych 92.2 0.08 2.7E-06 52.4 3.5 22 408-429 3-24 (216)
241 1iy2_A ATP-dependent metallopr 92.2 0.065 2.2E-06 55.6 3.0 21 408-428 76-96 (278)
242 3bgw_A DNAB-like replicative h 92.1 0.12 4.2E-06 57.8 5.4 50 405-456 197-246 (444)
243 2bwj_A Adenylate kinase 5; pho 92.1 0.093 3.2E-06 50.9 3.9 25 405-429 12-36 (199)
244 1qf9_A UMP/CMP kinase, protein 92.1 0.084 2.9E-06 50.8 3.5 22 407-428 8-29 (194)
245 1e6c_A Shikimate kinase; phosp 92.1 0.091 3.1E-06 49.8 3.7 24 406-429 3-26 (173)
246 3t61_A Gluconokinase; PSI-biol 92.1 0.084 2.9E-06 51.8 3.5 24 406-429 19-42 (202)
247 3hu3_A Transitional endoplasmi 92.0 0.073 2.5E-06 60.4 3.4 22 406-427 239-260 (489)
248 1yrb_A ATP(GTP)binding protein 92.0 0.12 3.9E-06 52.8 4.6 35 405-441 14-48 (262)
249 3umf_A Adenylate kinase; rossm 91.9 0.084 2.9E-06 53.4 3.4 24 405-428 29-52 (217)
250 1a5t_A Delta prime, HOLB; zinc 91.9 0.15 5E-06 54.7 5.5 26 406-431 25-50 (334)
251 1v5w_A DMC1, meiotic recombina 91.9 0.1 3.5E-06 56.3 4.3 53 405-457 122-180 (343)
252 1zuh_A Shikimate kinase; alpha 91.9 0.1 3.5E-06 49.5 3.8 24 406-429 8-31 (168)
253 2jaq_A Deoxyguanosine kinase; 91.9 0.094 3.2E-06 51.0 3.6 23 407-429 2-24 (205)
254 1zp6_A Hypothetical protein AT 91.8 0.078 2.7E-06 51.3 3.0 22 406-427 10-31 (191)
255 3dl0_A Adenylate kinase; phosp 91.8 0.076 2.6E-06 52.7 2.8 21 408-428 3-23 (216)
256 2wwf_A Thymidilate kinase, put 91.8 0.095 3.3E-06 51.5 3.5 26 406-431 11-36 (212)
257 3jvv_A Twitching mobility prot 91.8 0.14 4.7E-06 55.7 5.1 35 405-439 123-157 (356)
258 1nn5_A Similar to deoxythymidy 91.7 0.097 3.3E-06 51.5 3.5 28 406-433 10-37 (215)
259 2ffh_A Protein (FFH); SRP54, s 91.7 0.29 9.8E-06 54.5 7.7 56 407-463 100-158 (425)
260 1np6_A Molybdopterin-guanine d 91.7 0.18 6.2E-06 49.1 5.4 36 405-441 6-41 (174)
261 3sr0_A Adenylate kinase; phosp 91.7 0.1 3.5E-06 52.3 3.7 21 408-428 3-23 (206)
262 2vhj_A Ntpase P4, P4; non- hyd 91.7 0.19 6.6E-06 53.9 6.0 24 405-428 123-146 (331)
263 1ojl_A Transcriptional regulat 91.7 0.13 4.4E-06 54.5 4.6 23 405-427 25-47 (304)
264 1aky_A Adenylate kinase; ATP:A 91.6 0.1 3.5E-06 52.0 3.6 24 406-429 5-28 (220)
265 4eun_A Thermoresistant glucoki 91.6 0.11 3.9E-06 51.0 3.9 25 405-429 29-53 (200)
266 1ls1_A Signal recognition part 91.6 0.4 1.4E-05 50.6 8.3 45 406-451 99-146 (295)
267 1zak_A Adenylate kinase; ATP:A 91.5 0.1 3.4E-06 52.2 3.4 24 406-429 6-29 (222)
268 1knq_A Gluconate kinase; ALFA/ 91.5 0.11 3.8E-06 49.5 3.6 23 406-428 9-31 (175)
269 2ewv_A Twitching motility prot 91.4 0.15 5.2E-06 55.7 5.0 37 405-441 136-172 (372)
270 2vli_A Antibiotic resistance p 91.2 0.07 2.4E-06 51.2 1.9 22 406-427 6-27 (183)
271 1g41_A Heat shock protein HSLU 91.2 0.17 5.8E-06 56.7 5.1 24 406-429 51-74 (444)
272 2xb4_A Adenylate kinase; ATP-b 91.1 0.12 4.1E-06 51.9 3.6 23 407-429 2-24 (223)
273 1y63_A LMAJ004144AAA protein; 91.1 0.13 4.4E-06 50.0 3.6 23 406-428 11-33 (184)
274 2pt5_A Shikimate kinase, SK; a 91.1 0.13 4.5E-06 48.5 3.6 23 407-429 2-24 (168)
275 1rz3_A Hypothetical protein rb 91.0 0.32 1.1E-05 47.8 6.5 33 407-440 24-56 (201)
276 3tlx_A Adenylate kinase 2; str 91.0 0.13 4.3E-06 52.6 3.6 23 407-429 31-53 (243)
277 1ak2_A Adenylate kinase isoenz 91.0 0.13 4.4E-06 51.9 3.6 24 406-429 17-40 (233)
278 4edh_A DTMP kinase, thymidylat 90.9 0.29 1E-05 49.1 6.2 38 406-444 7-45 (213)
279 1ukz_A Uridylate kinase; trans 90.9 0.11 3.8E-06 50.9 3.0 22 407-428 17-38 (203)
280 1zd8_A GTP:AMP phosphotransfer 90.9 0.1 3.5E-06 52.3 2.8 23 406-428 8-30 (227)
281 2bdt_A BH3686; alpha-beta prot 90.8 0.12 4.1E-06 50.1 3.2 21 407-427 4-24 (189)
282 1rj9_A FTSY, signal recognitio 90.8 0.2 6.7E-06 53.3 5.0 36 406-442 103-138 (304)
283 2qen_A Walker-type ATPase; unk 90.8 0.21 7.3E-06 52.5 5.4 36 393-428 18-54 (350)
284 3bfv_A CAPA1, CAPB2, membrane 90.8 0.4 1.4E-05 49.9 7.2 34 406-440 83-117 (271)
285 4ag6_A VIRB4 ATPase, type IV s 90.7 0.19 6.5E-06 54.9 5.0 58 404-466 34-91 (392)
286 2i1q_A DNA repair and recombin 90.7 0.13 4.5E-06 54.6 3.6 53 405-457 98-166 (322)
287 2qor_A Guanylate kinase; phosp 90.7 0.12 4.1E-06 51.0 3.0 24 405-428 12-35 (204)
288 3be4_A Adenylate kinase; malar 90.7 0.14 4.8E-06 51.1 3.5 23 407-429 7-29 (217)
289 3ug7_A Arsenical pump-driving 90.7 0.21 7.4E-06 53.9 5.2 37 405-442 26-62 (349)
290 1e4v_A Adenylate kinase; trans 90.6 0.14 4.7E-06 50.9 3.4 22 408-429 3-24 (214)
291 2gno_A DNA polymerase III, gam 90.6 0.25 8.6E-06 52.4 5.6 23 406-428 19-41 (305)
292 3pxi_A Negative regulator of g 90.5 0.19 6.4E-06 60.0 5.1 37 393-429 186-225 (758)
293 3b85_A Phosphate starvation-in 90.5 0.22 7.5E-06 49.9 4.8 38 391-428 8-45 (208)
294 2ce7_A Cell division protein F 90.4 0.14 4.7E-06 58.0 3.5 22 407-428 51-72 (476)
295 3uie_A Adenylyl-sulfate kinase 90.3 0.16 5.6E-06 49.8 3.7 39 391-430 12-50 (200)
296 2v54_A DTMP kinase, thymidylat 90.3 0.11 3.8E-06 50.6 2.4 24 406-429 5-28 (204)
297 1ye8_A Protein THEP1, hypothet 90.3 0.17 5.8E-06 49.3 3.6 23 407-429 2-24 (178)
298 3zq6_A Putative arsenical pump 90.3 0.24 8.3E-06 52.8 5.2 36 406-442 15-50 (324)
299 1e9r_A Conjugal transfer prote 90.2 0.22 7.6E-06 55.1 5.0 43 405-448 53-95 (437)
300 1m7g_A Adenylylsulfate kinase; 90.2 0.35 1.2E-05 47.8 5.9 38 392-430 13-50 (211)
301 2bbw_A Adenylate kinase 4, AK4 90.2 0.17 6E-06 51.3 3.8 25 405-429 27-51 (246)
302 2eyu_A Twitching motility prot 90.1 0.26 8.9E-06 51.1 5.1 37 405-441 25-61 (261)
303 3tau_A Guanylate kinase, GMP k 90.1 0.16 5.6E-06 50.4 3.4 23 405-427 8-30 (208)
304 2p5t_B PEZT; postsegregational 90.0 0.1 3.5E-06 53.5 1.9 22 407-428 34-55 (253)
305 3bs4_A Uncharacterized protein 89.9 0.23 7.9E-06 51.6 4.4 54 405-460 21-74 (260)
306 1kgd_A CASK, peripheral plasma 89.7 0.2 6.9E-06 48.4 3.7 24 405-428 5-28 (180)
307 3cio_A ETK, tyrosine-protein k 89.7 0.5 1.7E-05 49.8 7.0 34 406-440 105-139 (299)
308 3m6a_A ATP-dependent protease 89.6 0.18 6.1E-06 57.9 3.8 25 405-429 108-132 (543)
309 1cke_A CK, MSSA, protein (cyti 89.6 0.21 7.3E-06 49.5 3.9 23 406-428 6-28 (227)
310 3lv8_A DTMP kinase, thymidylat 89.6 0.45 1.6E-05 48.6 6.4 41 405-445 27-68 (236)
311 1r6b_X CLPA protein; AAA+, N-t 89.6 0.31 1E-05 58.1 5.8 39 393-431 192-233 (758)
312 2j41_A Guanylate kinase; GMP, 89.5 0.2 6.7E-06 48.9 3.4 23 405-427 6-28 (207)
313 4eaq_A DTMP kinase, thymidylat 89.5 0.29 9.8E-06 49.6 4.7 33 406-440 27-59 (229)
314 1gtv_A TMK, thymidylate kinase 89.5 0.12 4E-06 50.9 1.8 24 407-430 2-25 (214)
315 3tr0_A Guanylate kinase, GMP k 89.4 0.2 6.8E-06 48.9 3.4 23 405-427 7-29 (205)
316 4gp7_A Metallophosphoesterase; 89.4 0.2 6.8E-06 48.1 3.3 20 405-424 9-28 (171)
317 2pez_A Bifunctional 3'-phospho 89.4 0.36 1.2E-05 46.2 5.2 26 406-431 6-31 (179)
318 3cmu_A Protein RECA, recombina 89.2 0.71 2.4E-05 60.4 9.1 40 405-445 1427-1466(2050)
319 1jjv_A Dephospho-COA kinase; P 89.0 0.2 6.9E-06 49.1 3.1 20 407-426 4-23 (206)
320 1ihu_A Arsenical pump-driving 89.0 0.35 1.2E-05 55.9 5.6 38 405-443 8-45 (589)
321 1c9k_A COBU, adenosylcobinamid 88.9 0.15 5.3E-06 50.0 2.2 46 407-457 1-46 (180)
322 3v9p_A DTMP kinase, thymidylat 88.9 0.49 1.7E-05 48.1 5.9 28 405-432 25-52 (227)
323 4tmk_A Protein (thymidylate ki 88.9 0.58 2E-05 47.0 6.4 49 406-454 4-53 (213)
324 2dhr_A FTSH; AAA+ protein, hex 88.8 0.18 6.2E-06 57.3 3.0 21 408-428 67-87 (499)
325 2oap_1 GSPE-2, type II secreti 88.8 0.31 1.1E-05 55.5 4.9 38 391-428 245-283 (511)
326 2wsm_A Hydrogenase expression/ 88.8 0.36 1.2E-05 47.6 4.8 34 405-440 30-63 (221)
327 3cf2_A TER ATPase, transitiona 88.7 0.14 4.7E-06 61.5 1.9 20 407-426 240-259 (806)
328 2qm8_A GTPase/ATPase; G protei 88.6 0.39 1.3E-05 51.6 5.3 36 406-442 56-91 (337)
329 3ake_A Cytidylate kinase; CMP 88.5 0.3 1E-05 47.6 3.9 24 406-429 3-26 (208)
330 3pxi_A Negative regulator of g 88.5 0.3 1E-05 58.2 4.7 23 407-429 523-545 (758)
331 1qvr_A CLPB protein; coiled co 88.4 0.5 1.7E-05 57.2 6.6 38 394-431 177-217 (854)
332 2www_A Methylmalonic aciduria 88.4 0.43 1.5E-05 51.6 5.4 36 406-442 75-110 (349)
333 2oze_A ORF delta'; para, walke 88.1 0.74 2.5E-05 47.9 7.0 46 394-440 21-71 (298)
334 3c8u_A Fructokinase; YP_612366 88.1 0.25 8.6E-06 48.8 3.1 25 406-430 23-47 (208)
335 3k1j_A LON protease, ATP-depen 88.1 0.31 1.1E-05 56.6 4.4 34 395-428 49-83 (604)
336 4a74_A DNA repair and recombin 88.0 0.24 8.4E-06 49.0 3.0 26 405-430 25-50 (231)
337 3a00_A Guanylate kinase, GMP k 87.9 0.26 8.9E-06 47.8 3.0 23 406-428 2-24 (186)
338 1byi_A Dethiobiotin synthase; 87.8 0.52 1.8E-05 46.7 5.3 34 407-441 4-37 (224)
339 3f9v_A Minichromosome maintena 87.8 0.25 8.6E-06 57.4 3.3 20 407-426 329-348 (595)
340 1ex7_A Guanylate kinase; subst 87.8 0.33 1.1E-05 47.8 3.7 21 406-426 2-22 (186)
341 1uj2_A Uridine-cytidine kinase 87.7 0.27 9.1E-06 50.3 3.1 22 407-428 24-45 (252)
342 3iqw_A Tail-anchored protein t 87.7 0.38 1.3E-05 51.8 4.4 37 405-442 16-52 (334)
343 2woo_A ATPase GET3; tail-ancho 87.6 0.44 1.5E-05 51.0 4.9 36 405-441 19-54 (329)
344 3nwj_A ATSK2; P loop, shikimat 87.4 0.37 1.3E-05 49.7 4.0 25 405-429 48-72 (250)
345 3kjh_A CO dehydrogenase/acetyl 87.4 0.32 1.1E-05 48.7 3.5 30 410-440 5-34 (254)
346 1ltq_A Polynucleotide kinase; 87.4 0.3 1E-05 51.0 3.3 21 407-427 4-24 (301)
347 1tf7_A KAIC; homohexamer, hexa 87.4 0.57 2E-05 53.4 5.9 48 405-454 281-328 (525)
348 2p67_A LAO/AO transport system 87.3 0.5 1.7E-05 50.8 5.1 35 406-441 57-91 (341)
349 2if2_A Dephospho-COA kinase; a 87.2 0.29 1E-05 47.8 3.0 21 407-427 3-23 (204)
350 1r6b_X CLPA protein; AAA+, N-t 87.0 0.36 1.2E-05 57.5 4.1 23 407-429 490-512 (758)
351 1hyq_A MIND, cell division inh 87.0 0.59 2E-05 47.5 5.3 34 407-441 5-38 (263)
352 2qt1_A Nicotinamide riboside k 87.0 0.31 1.1E-05 47.9 3.0 21 406-426 22-42 (207)
353 3cf2_A TER ATPase, transitiona 87.0 0.2 6.9E-06 60.1 1.9 46 408-457 514-569 (806)
354 1f2t_A RAD50 ABC-ATPase; DNA d 86.9 0.36 1.2E-05 45.5 3.3 26 405-430 23-48 (149)
355 1svm_A Large T antigen; AAA+ f 86.7 0.4 1.4E-05 52.5 4.0 24 405-428 169-192 (377)
356 3r20_A Cytidylate kinase; stru 86.6 0.4 1.4E-05 49.0 3.6 24 406-429 10-33 (233)
357 2ph1_A Nucleotide-binding prot 86.4 0.82 2.8E-05 46.8 6.0 34 406-440 20-53 (262)
358 1qvr_A CLPB protein; coiled co 86.3 0.38 1.3E-05 58.2 3.9 24 407-430 590-613 (854)
359 2i3b_A HCR-ntpase, human cance 86.3 0.46 1.6E-05 46.8 3.8 25 406-430 2-26 (189)
360 3lda_A DNA repair protein RAD5 86.3 0.4 1.4E-05 52.9 3.7 26 405-430 178-203 (400)
361 4dzz_A Plasmid partitioning pr 86.2 0.52 1.8E-05 45.8 4.2 33 408-441 5-37 (206)
362 1g3q_A MIND ATPase, cell divis 86.2 0.6 2E-05 46.6 4.7 34 407-441 5-38 (237)
363 1lvg_A Guanylate kinase, GMP k 86.2 0.45 1.5E-05 46.8 3.7 24 405-428 4-27 (198)
364 3q9l_A Septum site-determining 86.2 0.59 2E-05 47.3 4.7 33 407-440 5-37 (260)
365 3end_A Light-independent proto 86.1 0.64 2.2E-05 48.7 5.1 33 407-440 43-75 (307)
366 3io3_A DEHA2D07832P; chaperone 86.0 0.58 2E-05 50.7 4.7 37 405-442 18-56 (348)
367 3crm_A TRNA delta(2)-isopenten 85.9 0.35 1.2E-05 51.9 2.9 23 406-428 6-28 (323)
368 2afh_E Nitrogenase iron protei 85.9 0.7 2.4E-05 48.0 5.2 32 408-440 5-36 (289)
369 3asz_A Uridine kinase; cytidin 85.8 0.46 1.6E-05 46.7 3.5 23 406-428 7-29 (211)
370 3kta_A Chromosome segregation 85.7 0.41 1.4E-05 45.8 3.1 25 405-429 26-50 (182)
371 2grj_A Dephospho-COA kinase; T 85.6 0.5 1.7E-05 46.6 3.7 23 406-428 13-35 (192)
372 1cp2_A CP2, nitrogenase iron p 85.6 0.64 2.2E-05 47.5 4.6 31 409-440 5-35 (269)
373 2woj_A ATPase GET3; tail-ancho 85.6 0.6 2.1E-05 50.5 4.7 38 405-443 18-57 (354)
374 1uf9_A TT1252 protein; P-loop, 85.4 0.44 1.5E-05 46.2 3.1 21 407-427 10-30 (203)
375 3tqc_A Pantothenate kinase; bi 85.3 0.77 2.6E-05 49.2 5.2 34 407-441 94-129 (321)
376 3ice_A Transcription terminati 85.2 1.2 4.1E-05 49.0 6.7 61 393-453 159-225 (422)
377 1z6t_A APAF-1, apoptotic prote 85.0 0.72 2.5E-05 52.8 5.2 36 393-428 130-170 (591)
378 3cwq_A Para family chromosome 84.9 0.74 2.5E-05 45.6 4.6 32 407-440 3-34 (209)
379 3l0o_A Transcription terminati 84.7 1.2 4.3E-05 48.9 6.5 39 395-433 162-203 (427)
380 3qks_A DNA double-strand break 84.5 0.53 1.8E-05 46.7 3.3 26 405-430 23-48 (203)
381 1tf7_A KAIC; homohexamer, hexa 84.5 1.3 4.3E-05 50.5 6.9 38 405-442 39-77 (525)
382 2qmh_A HPR kinase/phosphorylas 84.5 0.45 1.5E-05 47.6 2.7 23 405-427 34-56 (205)
383 2hf9_A Probable hydrogenase ni 84.5 0.87 3E-05 44.9 4.9 39 393-431 23-64 (226)
384 3ld9_A DTMP kinase, thymidylat 84.4 1.3 4.4E-05 44.8 6.2 45 406-451 22-69 (223)
385 3cmw_A Protein RECA, recombina 84.4 0.57 1.9E-05 60.5 4.2 43 405-448 383-425 (1706)
386 3ney_A 55 kDa erythrocyte memb 84.4 0.63 2.2E-05 46.2 3.8 23 405-427 19-41 (197)
387 1vht_A Dephospho-COA kinase; s 84.3 0.51 1.7E-05 46.7 3.1 20 407-426 6-25 (218)
388 2v9p_A Replication protein E1; 84.2 0.62 2.1E-05 49.5 3.9 32 405-440 126-157 (305)
389 3igf_A ALL4481 protein; two-do 84.2 0.63 2.1E-05 50.9 4.0 36 406-442 3-38 (374)
390 3cmw_A Protein RECA, recombina 84.0 0.82 2.8E-05 59.0 5.5 41 405-446 732-772 (1706)
391 3lnc_A Guanylate kinase, GMP k 84.0 0.42 1.4E-05 47.9 2.3 22 405-426 27-48 (231)
392 3ea0_A ATPase, para family; al 83.9 0.75 2.6E-05 46.0 4.2 35 407-441 7-41 (245)
393 3la6_A Tyrosine-protein kinase 83.8 1.3 4.5E-05 46.4 6.2 34 406-440 93-127 (286)
394 2f6r_A COA synthase, bifunctio 83.4 0.54 1.9E-05 49.0 3.0 20 407-426 77-96 (281)
395 3gmt_A Adenylate kinase; ssgci 83.3 0.57 2E-05 47.8 3.0 22 408-429 11-32 (230)
396 3d3q_A TRNA delta(2)-isopenten 83.3 0.57 2E-05 50.5 3.1 24 406-429 8-31 (340)
397 1pzn_A RAD51, DNA repair and r 83.2 0.55 1.9E-05 50.7 3.0 25 405-429 131-155 (349)
398 3zvl_A Bifunctional polynucleo 83.1 0.43 1.5E-05 52.8 2.2 23 405-427 258-280 (416)
399 1q3t_A Cytidylate kinase; nucl 82.7 0.77 2.6E-05 46.2 3.7 23 406-428 17-39 (236)
400 2jeo_A Uridine-cytidine kinase 82.7 0.76 2.6E-05 46.6 3.7 23 407-429 27-49 (245)
401 1wcv_1 SOJ, segregation protei 82.7 0.78 2.7E-05 46.7 3.8 33 407-440 9-41 (257)
402 4e22_A Cytidylate kinase; P-lo 82.6 0.7 2.4E-05 47.3 3.4 22 406-427 28-49 (252)
403 3hjn_A DTMP kinase, thymidylat 82.4 2 6.9E-05 42.3 6.5 33 407-440 2-34 (197)
404 1znw_A Guanylate kinase, GMP k 82.2 0.78 2.7E-05 45.2 3.5 24 405-428 20-43 (207)
405 1odf_A YGR205W, hypothetical 3 82.2 0.79 2.7E-05 48.2 3.6 25 406-430 32-56 (290)
406 1ypw_A Transitional endoplasmi 82.1 0.5 1.7E-05 56.9 2.3 21 406-426 239-259 (806)
407 1ypw_A Transitional endoplasmi 82.1 0.42 1.4E-05 57.6 1.6 24 406-429 512-535 (806)
408 1z6g_A Guanylate kinase; struc 82.0 0.77 2.6E-05 45.9 3.4 31 405-439 23-53 (218)
409 3fkq_A NTRC-like two-domain pr 82.0 1.1 3.6E-05 48.8 4.7 34 407-441 146-179 (373)
410 2ga8_A Hypothetical 39.9 kDa p 81.8 0.79 2.7E-05 49.8 3.5 23 407-429 26-48 (359)
411 2h92_A Cytidylate kinase; ross 81.8 0.72 2.5E-05 45.5 3.0 22 406-427 4-25 (219)
412 3tmk_A Thymidylate kinase; pho 81.7 0.83 2.8E-05 46.0 3.5 24 406-429 6-29 (216)
413 3pg5_A Uncharacterized protein 81.6 0.75 2.6E-05 49.8 3.3 33 407-440 4-36 (361)
414 3exa_A TRNA delta(2)-isopenten 81.5 0.59 2E-05 49.9 2.4 25 405-429 3-27 (322)
415 3a8t_A Adenylate isopentenyltr 81.2 0.54 1.8E-05 50.7 1.9 23 406-428 41-63 (339)
416 3foz_A TRNA delta(2)-isopenten 81.1 0.69 2.4E-05 49.3 2.7 23 406-428 11-33 (316)
417 2xj4_A MIPZ; replication, cell 81.1 1.1 3.7E-05 46.6 4.2 33 407-440 7-39 (286)
418 3ez2_A Plasmid partition prote 81.0 1.3 4.4E-05 48.3 5.0 50 391-440 84-149 (398)
419 3k9g_A PF-32 protein; ssgcid, 81.0 0.85 2.9E-05 46.6 3.3 32 407-440 30-61 (267)
420 2ocp_A DGK, deoxyguanosine kin 80.8 0.74 2.5E-05 46.4 2.7 23 407-429 4-26 (241)
421 3cmu_A Protein RECA, recombina 80.7 1.1 3.8E-05 58.6 4.9 40 405-445 383-422 (2050)
422 3aez_A Pantothenate kinase; tr 80.6 0.95 3.3E-05 48.1 3.6 24 406-429 91-114 (312)
423 2axn_A 6-phosphofructo-2-kinas 80.5 0.91 3.1E-05 51.8 3.6 24 406-429 36-59 (520)
424 1s96_A Guanylate kinase, GMP k 80.4 0.96 3.3E-05 45.5 3.4 23 405-427 16-38 (219)
425 1sq5_A Pantothenate kinase; P- 80.1 0.98 3.4E-05 47.7 3.5 33 407-440 82-116 (308)
426 3eph_A TRNA isopentenyltransfe 79.9 0.91 3.1E-05 50.1 3.2 24 406-429 3-26 (409)
427 4akg_A Glutathione S-transfera 79.5 1.2 4.2E-05 60.0 4.9 29 399-427 1260-1289(2695)
428 4hlc_A DTMP kinase, thymidylat 79.1 2.6 8.8E-05 41.8 6.0 45 407-453 4-49 (205)
429 3fwy_A Light-independent proto 79.0 1.9 6.5E-05 45.8 5.3 35 405-440 48-82 (314)
430 2f1r_A Molybdopterin-guanine d 78.7 0.93 3.2E-05 43.8 2.6 27 406-432 3-29 (171)
431 3tqf_A HPR(Ser) kinase; transf 78.3 1.1 3.9E-05 43.7 3.0 21 407-427 18-38 (181)
432 2obl_A ESCN; ATPase, hydrolase 78.3 1.6 5.5E-05 47.1 4.5 48 396-444 59-109 (347)
433 1sky_E F1-ATPase, F1-ATP synth 78.1 1.7 5.8E-05 48.9 4.8 53 405-457 151-205 (473)
434 3qkt_A DNA double-strand break 77.6 1.3 4.3E-05 47.5 3.5 26 405-430 23-48 (339)
435 1ihu_A Arsenical pump-driving 77.5 2 6.8E-05 49.5 5.3 35 405-440 327-361 (589)
436 1nij_A Hypothetical protein YJ 77.3 1 3.4E-05 47.9 2.5 34 406-442 5-38 (318)
437 1x6v_B Bifunctional 3'-phospho 77.2 2.1 7.1E-05 50.0 5.3 43 391-433 35-80 (630)
438 1a7j_A Phosphoribulokinase; tr 77.1 0.81 2.8E-05 48.1 1.7 25 406-430 6-30 (290)
439 3jux_A Protein translocase sub 77.0 1.9 6.7E-05 51.0 5.0 71 393-466 78-152 (822)
440 3qf7_A RAD50; ABC-ATPase, ATPa 76.8 1.4 4.7E-05 47.9 3.5 26 405-430 23-48 (365)
441 2yv5_A YJEQ protein; hydrolase 76.3 2.1 7E-05 45.2 4.6 32 395-426 155-186 (302)
442 2gza_A Type IV secretion syste 76.3 1.4 4.9E-05 47.6 3.5 24 405-428 175-198 (361)
443 1p5z_B DCK, deoxycytidine kina 76.1 0.55 1.9E-05 48.1 0.1 23 406-428 25-47 (263)
444 2lv9_A Histone-lysine N-methyl 76.1 2.1 7.1E-05 37.6 3.8 25 143-170 29-54 (98)
445 1htw_A HI0065; nucleotide-bind 76.1 1.5 5.1E-05 41.7 3.1 24 406-429 34-57 (158)
446 2pt7_A CAG-ALFA; ATPase, prote 75.9 1.1 3.7E-05 48.0 2.3 24 405-428 171-194 (330)
447 2dyk_A GTP-binding protein; GT 75.7 1.5 5.1E-05 40.1 3.0 19 408-426 4-22 (161)
448 3fdi_A Uncharacterized protein 75.7 1.6 5.4E-05 43.2 3.3 25 405-429 6-30 (201)
449 2rcn_A Probable GTPase ENGC; Y 75.6 2.2 7.4E-05 46.4 4.6 29 398-426 208-236 (358)
450 2f9l_A RAB11B, member RAS onco 75.2 1.5 5.2E-05 42.3 3.0 19 408-426 8-26 (199)
451 1bif_A 6-phosphofructo-2-kinas 75.1 1.6 5.6E-05 48.8 3.6 24 407-430 41-64 (469)
452 1u0l_A Probable GTPase ENGC; p 75.0 2.2 7.6E-05 44.8 4.4 31 396-426 160-190 (301)
453 1nrj_B SR-beta, signal recogni 74.9 1.6 5.6E-05 42.6 3.2 21 406-426 13-33 (218)
454 1tq4_A IIGP1, interferon-induc 74.2 1.9 6.6E-05 47.7 3.8 36 392-427 55-91 (413)
455 1oix_A RAS-related protein RAB 74.2 1.6 5.5E-05 42.0 2.9 20 407-426 31-50 (191)
456 2ck3_D ATP synthase subunit be 74.0 4.3 0.00015 45.7 6.6 63 396-458 141-208 (482)
457 2gks_A Bifunctional SAT/APS ki 73.7 2.9 0.0001 47.9 5.3 34 407-441 374-407 (546)
458 1m8p_A Sulfate adenylyltransfe 73.7 3 0.0001 48.1 5.4 34 407-440 398-431 (573)
459 1z2a_A RAS-related protein RAB 73.7 1.8 6.2E-05 39.8 3.0 19 408-426 8-26 (168)
460 1kao_A RAP2A; GTP-binding prot 73.4 1.9 6.3E-05 39.5 3.0 19 408-426 6-24 (167)
461 3ez9_A Para; DNA binding, wing 73.3 1.3 4.4E-05 48.5 2.1 49 391-440 87-152 (403)
462 2wji_A Ferrous iron transport 73.2 1.9 6.4E-05 40.3 3.0 20 407-426 5-24 (165)
463 2ce2_X GTPase HRAS; signaling 72.8 1.9 6.5E-05 39.3 2.9 19 408-426 6-24 (166)
464 2ged_A SR-beta, signal recogni 72.6 1.9 6.6E-05 41.0 3.0 21 406-426 49-69 (193)
465 3of5_A Dethiobiotin synthetase 72.4 3.5 0.00012 41.6 5.0 34 407-441 6-40 (228)
466 1fx0_B ATP synthase beta chain 72.0 3.6 0.00012 46.5 5.4 61 397-457 154-219 (498)
467 3cr8_A Sulfate adenylyltranfer 71.9 2.6 8.9E-05 48.4 4.3 33 406-438 370-402 (552)
468 1wms_A RAB-9, RAB9, RAS-relate 71.9 2.1 7.1E-05 39.9 3.0 19 408-426 10-28 (177)
469 1g16_A RAS-related protein SEC 71.8 2 7E-05 39.5 2.9 19 408-426 6-24 (170)
470 1ek0_A Protein (GTP-binding pr 71.7 2.2 7.4E-05 39.2 3.0 19 408-426 6-24 (170)
471 2onk_A Molybdate/tungstate ABC 71.5 2.2 7.4E-05 43.5 3.2 34 406-440 25-58 (240)
472 1ky3_A GTP-binding protein YPT 71.4 2.2 7.4E-05 39.8 3.0 19 408-426 11-29 (182)
473 1u8z_A RAS-related protein RAL 71.1 2.3 7.8E-05 38.9 3.0 19 408-426 7-25 (168)
474 1dek_A Deoxynucleoside monopho 70.8 4.9 0.00017 41.0 5.7 44 407-456 3-46 (241)
475 2pcj_A ABC transporter, lipopr 70.7 2.2 7.6E-05 42.8 3.1 35 405-440 30-64 (224)
476 2erx_A GTP-binding protein DI- 70.7 2.3 7.9E-05 39.1 3.0 19 408-426 6-24 (172)
477 1z0j_A RAB-22, RAS-related pro 70.5 2.4 8.1E-05 39.0 3.0 19 408-426 9-27 (170)
478 2nzj_A GTP-binding protein REM 70.4 2.4 8.1E-05 39.3 3.0 19 408-426 7-25 (175)
479 2cbz_A Multidrug resistance-as 70.2 2.4 8.4E-05 42.9 3.3 35 405-440 31-65 (237)
480 1r2q_A RAS-related protein RAB 69.9 2.5 8.5E-05 38.8 3.0 19 408-426 9-27 (170)
481 3q85_A GTP-binding protein REM 69.9 2.5 8.5E-05 39.0 3.0 18 408-425 5-22 (169)
482 2a5y_B CED-4; apoptosis; HET: 69.8 3.8 0.00013 46.7 5.1 33 394-426 135-173 (549)
483 1sgw_A Putative ABC transporte 69.8 2.5 8.5E-05 42.3 3.1 36 405-441 35-70 (214)
484 1lw7_A Transcriptional regulat 69.6 2.4 8.1E-05 45.7 3.2 22 406-427 171-192 (365)
485 1svi_A GTP-binding protein YSX 69.5 2.3 8E-05 40.4 2.8 21 406-426 24-44 (195)
486 2lkc_A Translation initiation 69.5 2.6 8.9E-05 39.2 3.1 21 406-426 9-29 (178)
487 1z08_A RAS-related protein RAB 69.4 2.5 8.7E-05 38.9 3.0 19 408-426 9-27 (170)
488 3hdt_A Putative kinase; struct 69.4 2.8 9.6E-05 42.2 3.5 24 406-429 15-38 (223)
489 3tif_A Uncharacterized ABC tra 69.4 2.6 8.9E-05 42.7 3.3 36 405-441 31-66 (235)
490 1c1y_A RAS-related protein RAP 69.3 2.6 9E-05 38.6 3.0 19 408-426 6-24 (167)
491 2zej_A Dardarin, leucine-rich 69.1 2.2 7.4E-05 40.6 2.5 19 408-426 5-23 (184)
492 2y8e_A RAB-protein 6, GH09086P 68.8 2.6 8.8E-05 39.2 2.9 19 408-426 17-35 (179)
493 2dpy_A FLII, flagellum-specifi 68.7 3.7 0.00013 45.7 4.5 55 396-451 145-202 (438)
494 2d2e_A SUFC protein; ABC-ATPas 68.7 2.9 9.9E-05 42.7 3.4 36 405-440 29-65 (250)
495 3auy_A DNA double-strand break 68.7 2.7 9.1E-05 45.5 3.3 26 405-430 25-50 (371)
496 2wjg_A FEOB, ferrous iron tran 68.4 2.7 9.4E-05 39.6 3.0 20 407-426 9-28 (188)
497 2hxs_A RAB-26, RAS-related pro 68.3 2.8 9.5E-05 39.1 3.0 19 408-426 9-27 (178)
498 3sop_A Neuronal-specific septi 67.9 3 0.0001 43.3 3.4 22 408-429 5-26 (270)
499 1ji0_A ABC transporter; ATP bi 67.8 2.9 0.0001 42.4 3.3 35 405-440 32-66 (240)
500 1b0u_A Histidine permease; ABC 67.7 2.9 9.9E-05 43.1 3.2 35 405-440 32-66 (262)
No 1
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=5.1e-128 Score=1158.22 Aligned_cols=636 Identities=72% Similarity=1.228 Sum_probs=570.8
Q ss_pred ccCCcccccccCCCCCCceEEcCCCccCeeeeCCCCCCCcchhhhhhhhcCcceEeecCCCCCcccceeeeccccccccc
Q 004009 138 ADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFL 217 (779)
Q Consensus 138 ~~~~~~~c~ycg~~~~~~~~~c~~~~c~kwfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~lecy~c~~~nvf~ 217 (779)
+++|+|||+|||||+|+|||+|++ |+||||||+|+|+|||||+||||||||||+||||+|||||+||||+||++|||+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~--~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~ 79 (800)
T 2wjy_A 2 KDLPIHACSYCGIHDPACVVYCNT--SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFL 79 (800)
T ss_dssp CCCCTTSCTTTCCCCGGGEEEETT--TTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTT
T ss_pred CCCCchhccccCCCCCCeEEEcCC--CCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceee
Confidence 568999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCceEEEEcchhHhH----------------------------------------------------------
Q 004009 218 LGFISAKTESVVVLLCREPCLN---------------------------------------------------------- 239 (779)
Q Consensus 218 lgf~~~~~~~~~~~~~r~~~~~---------------------------------------------------------- 239 (779)
|||||+|+|+|||||||+||+.
T Consensus 80 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 159 (800)
T 2wjy_A 80 LGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENP 159 (800)
T ss_dssp CEEEC-----CCEECCTTTTSSTTC----------CEESBCSSSBCTTTSCCCCHHHHHHSCCCCHHHHHHHHHHHTTCT
T ss_pred eeceecccCceEEEEecCcccccchhhccCCCHHhcccccccccccHhhcCCCCHHHHhhhcCCCHHHHHHHHHHhccCc
Confidence 9999999999999999999976
Q ss_pred ---------------------------------------------HhhhcccccceEEEEEecCCceEEEEEEccCCCCC
Q 004009 240 ---------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNE 274 (779)
Q Consensus 240 ---------------------------------------------~~~e~~~~~~~~~~~~~~l~~k~~~~f~~~~~~~~ 274 (779)
.++|++...+++++|++++++|.+++|.++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (800)
T 2wjy_A 160 SATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSD 239 (800)
T ss_dssp TCCTTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEECTTCCEEEEECCCBCCC-
T ss_pred CcchhhhhhccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEEEecCCCeeEEEEEeccccCC
Confidence 45668888899999999999999999999887788
Q ss_pred cCCCCCCEEEEEecCCCCCCcceEEEEEEEecc--ccEEEEEeecCCCCccccCCCceEEEeeccchHHHHHHHHHHHHh
Q 004009 275 LRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAV 352 (779)
Q Consensus 275 ~~l~~GD~v~l~~~g~~~~~~~~~~g~V~~v~~--~~~v~l~l~~~~~~p~~~~~~~~v~~~~~~~s~~R~~~aL~~~~~ 352 (779)
.+|.+||.|.|++.+. ....|.+.|+|+++.+ .++|.+++......|.....+|.++++|++++|+||+.||++++.
T Consensus 240 ~~l~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~aL~~~~~ 318 (800)
T 2wjy_A 240 MRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAV 318 (800)
T ss_dssp -CCCTTCEEEEEECSS-SSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CCCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCChHHHHHHHHHHHHH
Confidence 9999999999998876 4577999999999986 467999987666677777778999999999999999999999998
Q ss_pred hhcchhhhHhhhhcCCchhhhhhhccCCCCCCCCCCCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 353 DETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 353 ~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
.+..++.++++.++++..++..++..+|..|..+....||++|++||..++..++++|+||||||||+|+++++.++++.
T Consensus 319 ~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~ 398 (800)
T 2wjy_A 319 DETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ 398 (800)
T ss_dssp CTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred hhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 88888899999999887655555555666666666788999999999999999999999999999999999999999875
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCch
Q 004009 433 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512 (779)
Q Consensus 433 ~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~~sre~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~ 512 (779)
+..+||+|||||.|||+|.++|.+.+++++|+++.+++.+..++...++|..+..... ...++++.+++++.+.++..
T Consensus 399 ~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~--~~~l~~l~~~~~~~~~~~~~ 476 (800)
T 2wjy_A 399 GNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSA 476 (800)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTT--CHHHHHHHHHHTTTSCCCHH
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecccchhhhcchhhhhhHHHHHHcCcc--HHHHHHHHHHHHhhcccChH
Confidence 6679999999999999999999999999999999999888888888899998886654 45677777777777778877
Q ss_pred HHHHHHHHHHHHHHHHhhccccceecccccCCccccCCCCCEEEEEcCCCCChhhhhhhhhcCCCeEEEEeCCCCCCcee
Q 004009 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592 (779)
Q Consensus 513 d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQatEpe~LipL~~~~~~lILVGD~~QLpPvv 592 (779)
+++.|+.+.+..++.+++.++||++||.+++...+....||+||||||+|+++|++|+|+..+++++||||||+||||++
T Consensus 477 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QLpPvv 556 (800)
T 2wjy_A 477 DEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV 556 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTTTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCC
T ss_pred HHHHHHHHHHHHHHhhhccCCEEEEchhhhCChhhhcCCCCEEEEECCCCCCcHHHHHHHHhcCCeEEEecccccCCCee
Confidence 77888888888888999999999999999998888888999999999999999999999988889999999999999999
Q ss_pred echHHHHhccchhHHHHHHHCCCccEEeccccCCchHHHHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEE
Q 004009 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672 (779)
Q Consensus 593 ~s~~a~~~gl~~SLFeRLi~~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~P~~f~~ 672 (779)
.+..+...|+..|+|+||+..+..+++|++||||||+|++|+|++||+|+|.++.....+...+..++|+.+..|++|++
T Consensus 557 ~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~ 636 (800)
T 2wjy_A 557 MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 636 (800)
T ss_dssp CCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEE
T ss_pred cchhhhhcCcchHHHHHHHhCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEE
Confidence 99988889999999999999888899999999999999999999999999999887777766666789998899999999
Q ss_pred eCCcceeccCCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEcccHHHHHHHHHHHHHcCCcccccCCCeEEccCCCCC
Q 004009 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752 (779)
Q Consensus 673 ~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITPY~~Qv~~L~~~L~~~~~~~~~~~~~V~V~TVD~FQ 752 (779)
+.|.++....+.|+.|..||+.|.++|..|++.|+++.+|||||||++|+.+|++.|...+.+.......|+|+|||+||
T Consensus 637 ~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQ 716 (800)
T 2wjy_A 637 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQ 716 (800)
T ss_dssp CCCCCEECSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGT
T ss_pred cCCceeecCCCCcccCHHHHHHHHHHHHHHHHcCCCcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccC
Confidence 99988877889999999999999999999999999999999999999999999999987665433334579999999999
Q ss_pred CCcCCEEEEEeeeeCCCCCcccccCC
Q 004009 753 GREKDYIILSCVRSNEHQRNRYVKTK 778 (779)
Q Consensus 753 GrEkDvIIlS~VRSn~~~~iGFL~d~ 778 (779)
|+|+|+||+|+||+|..+++|||+|+
T Consensus 717 G~E~dvVIlS~vrs~~~~~~gfl~d~ 742 (800)
T 2wjy_A 717 GREKDFIILSCVRANEHQGIGFLNDP 742 (800)
T ss_dssp TCCEEEEEEECCCCSCCCCCGGGTCH
T ss_pred CCcCCEEEEEecCCCCccccccccCc
Confidence 99999999999999998999999874
No 2
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-126 Score=1146.83 Aligned_cols=635 Identities=59% Similarity=1.008 Sum_probs=549.0
Q ss_pred CccCCcccccccCCCCCCceEEcCCCccCeeeeCCCCCCCcchhhhhhhhcCcceEeecCCCCCcccceeeecccccccc
Q 004009 137 KADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVF 216 (779)
Q Consensus 137 ~~~~~~~~c~ycg~~~~~~~~~c~~~~c~kwfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~lecy~c~~~nvf 216 (779)
..++|+|||+|||||+|+|||+|++ |+||||||+|+|+|||||+||||||||||+||||+|||||+||||+||++|||
T Consensus 6 ~~~~~~~~c~yc~~~~~~~~~~c~~--~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f 83 (802)
T 2xzl_A 6 SPSASDNSCAYCGIDSAKCVIKCNS--CKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVF 83 (802)
T ss_dssp ------CCCTTTCCCCTTTEEEETT--TCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTT
T ss_pred cccCChhhCcccCCCCCceEEEeCC--CCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCcee
Confidence 4568999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccCCceEEEEcchhHhH---------------------------------------------------------
Q 004009 217 LLGFISAKTESVVVLLCREPCLN--------------------------------------------------------- 239 (779)
Q Consensus 217 ~lgf~~~~~~~~~~~~~r~~~~~--------------------------------------------------------- 239 (779)
+|||||+|+|+|||||||+||++
T Consensus 84 ~lg~~~~~~~~~~~~~cr~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~e~~w~~~~~~ 163 (802)
T 2xzl_A 84 LLGFVSAKSEAVVVLLCRIPCAQTKNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKDA 163 (802)
T ss_dssp TEEEEC------CEEEETTTTTTCC---CCGGGCEESBCSSSBCTTTSCCCCTTGGGGSCCCCHHHHHHHHHHHTTCCCC
T ss_pred eeeeeeccCCceEEEEeCCcccchhhcCCcHhhCceeecccccchhhccCCCHHHhhhhcCCCHHHHHHHHHHHhhCcCC
Confidence 99999999999999999999975
Q ss_pred -------------------------------------------HhhhcccccceEEEEEecCCceEEEEEEccC-CCCCc
Q 004009 240 -------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNEL 275 (779)
Q Consensus 240 -------------------------------------------~~~e~~~~~~~~~~~~~~l~~k~~~~f~~~~-~~~~~ 275 (779)
.++|++...++.++|+++++++.++.|.++. .+.+.
T Consensus 164 ~l~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (802)
T 2xzl_A 164 TINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLSTFESNEL 243 (802)
T ss_dssp CC------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEECTTSCEEEEEC---------
T ss_pred chhhhhcccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhHhhccCceEeeeccCCCeEEEEEEecccccCCC
Confidence 4556778888999999999999999999886 56788
Q ss_pred CCCCCCEEEEEecCCCCCCcceEEEEEEEecc--ccEEEEEeecCC-CCccccCCCceEEEeeccchHHHHHHHHHHHHh
Q 004009 276 RLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRASQ-GVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAV 352 (779)
Q Consensus 276 ~l~~GD~v~l~~~g~~~~~~~~~~g~V~~v~~--~~~v~l~l~~~~-~~p~~~~~~~~v~~~~~~~s~~R~~~aL~~~~~ 352 (779)
++.+||.|.|++.+. ....|.+.|+|+++.+ .++|.+++.... ..|.+...+|.++++|++++|+||+.||++++.
T Consensus 244 ~~~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~AL~~~~~ 322 (802)
T 2xzl_A 244 KVAIGDEMILWYSGM-QHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAI 322 (802)
T ss_dssp CCCTTCEEEEEECSS-SSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCC-CCCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCchHHHHHHHHHHHHh
Confidence 999999999998776 4567999999999986 578899986433 346666777999999999999999999999998
Q ss_pred hhcchhhhHhhhhcCCchhhhhhhccCCCCCCCCCCCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 353 DETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 353 ~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
++.+++.++++.++|+..+...+...+|+.|..+.+..||++|++||..++..++++|+||||||||+|+++++.++++.
T Consensus 323 ~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~ 402 (802)
T 2xzl_A 323 DKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI 402 (802)
T ss_dssp CTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 87788889999999987655545555677676667789999999999999999999999999999999999999999875
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCch
Q 004009 433 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512 (779)
Q Consensus 433 ~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~~sre~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~ 512 (779)
+..+||+|||||.|||+|.+||.+.+++++|+++.+++.+...+...++|..++.... ..++++.+++.+.+.++..
T Consensus 403 ~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~---~~l~~l~~~~~~~~~ls~~ 479 (802)
T 2xzl_A 403 HKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAK---GELKNLLKLKDEVGELSAS 479 (802)
T ss_dssp HCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCC---THHHHHHHHHHHHSCCCHH
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecccchhhhcchhhhhhHHHHHHhhcH---HHHHHHHHHHHhhccCCHH
Confidence 5569999999999999999999999999999999988888777888888888876543 2556666666667777777
Q ss_pred HHHHHHHHHHHHHHHHhhccccceecccccCCccccCCCCCEEEEEcCCCCChhhhhhhhhcCCCeEEEEeCCCCCCcee
Q 004009 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592 (779)
Q Consensus 513 d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQatEpe~LipL~~~~~~lILVGD~~QLpPvv 592 (779)
+.+.|..+.+..+..+++.++||++|+.+++...+.. +||+||||||+|+++|++|+++..+++++||||||+||||++
T Consensus 480 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L~~-~fd~viIDEA~q~~e~~~li~l~~~~~~lilvGD~~QL~pvv 558 (802)
T 2xzl_A 480 DTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDT-KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVI 558 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCTTCCS-CCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEechhhcChHHHhc-cCCEEEEECccccchHHHHHHHHhCCCEEEEEeCccccCCee
Confidence 7777877777778889999999999999999888877 999999999999999999999987789999999999999999
Q ss_pred echHHHHhccchhHHHHHHHCCCccEEeccccCCchHHHHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEE
Q 004009 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672 (779)
Q Consensus 593 ~s~~a~~~gl~~SLFeRLi~~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~P~~f~~ 672 (779)
.+..+...++..|+|+|+...+..+++|++||||||.|++|+|+.||+|+|.++.+...+......++|+..+.|++|++
T Consensus 559 ~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~ 638 (802)
T 2xzl_A 559 LERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWA 638 (802)
T ss_dssp CCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEE
T ss_pred chhhhhhcCCchhHHHHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEE
Confidence 99888888999999999999888899999999999999999999999999998887776666556688998889999999
Q ss_pred eCCcceeccCCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEcccHHHHHHHHHHHHHcCCcccccCCCeEEccCCCCC
Q 004009 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752 (779)
Q Consensus 673 ~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITPY~~Qv~~L~~~L~~~~~~~~~~~~~V~V~TVD~FQ 752 (779)
+.|.++....++|+.|..||+.|++++.+|++.|+++++|||||||++|+.+|++.|...+.+.......|+|+|||+||
T Consensus 639 ~~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQ 718 (802)
T 2xzl_A 639 NYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQ 718 (802)
T ss_dssp CCCCCEECTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHT
T ss_pred cCCceeecCCCCCcCCHHHHHHHHHHHHHHHHcCCCcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcC
Confidence 99988887889999999999999999999999999999999999999999999999987664433334579999999999
Q ss_pred CCcCCEEEEEeeeeCCCCCcccccCC
Q 004009 753 GREKDYIILSCVRSNEHQRNRYVKTK 778 (779)
Q Consensus 753 GrEkDvIIlS~VRSn~~~~iGFL~d~ 778 (779)
|+|+|+||||+||+|..+++|||+|+
T Consensus 719 G~E~dvVIlS~vrs~~~~~~gfl~d~ 744 (802)
T 2xzl_A 719 GREKDYIILSCVRANEQQAIGFLRDP 744 (802)
T ss_dssp TCCEEEEEEECCCCCTTCCCGGGGCH
T ss_pred CCccCEEEEEeccCCCCCCcccccCc
Confidence 99999999999999998999999874
No 3
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=7.7e-85 Score=768.43 Aligned_cols=536 Identities=71% Similarity=1.187 Sum_probs=464.8
Q ss_pred HhhhcccccceEEEEEecCCceEEEEEEccCCCCCcCCCCCCEEEEEecCCCCCCcceEEEEEEEecc--ccEEEEEeec
Q 004009 240 MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRA 317 (779)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~l~~k~~~~f~~~~~~~~~~l~~GD~v~l~~~g~~~~~~~~~~g~V~~v~~--~~~v~l~l~~ 317 (779)
.++|++.+++++++|++++++|.+++|.++..+.+++|..||.|+|++.++ ....|.+.|+|+++.+ +++|.|+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~l~~~~~-~~~~~~~~g~v~~~~~~~~~~v~v~~~~ 107 (624)
T 2gk6_A 29 KLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNYGDEIAIELRS 107 (624)
T ss_dssp HHHHHTCEEEECEEEEECTTSCEEEEEECC-------CCTTCEEEEEECSS-SSCCCEEEEEEEECSCSSCSEEEEEESC
T ss_pred HHHhhhhccCceEEeeecCCCceEEEEEecccccCCcCCCCCEEEEEECCC-CCCCcEEEEEEEEecCCCCCEEEEEEcc
Confidence 568889999999999999999999999999888889999999999998776 5577999999999986 5789999976
Q ss_pred CCCCccccCCCceEEEeeccchHHHHHHHHHHHHhhhcchhhhHhhhhcCCchhhhhhhccCCCCCCCCCCCCCCHHHHH
Q 004009 318 SQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVF 397 (779)
Q Consensus 318 ~~~~p~~~~~~~~v~~~~~~~s~~R~~~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~ 397 (779)
....|.+....|.+++.|++++|+||+.||++++.++.+++.++++.++|+..++..++..+|..|..+.++.||++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ln~~Q~~ 187 (624)
T 2gk6_A 108 SVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVY 187 (624)
T ss_dssp CTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHH
T ss_pred CCCCccccccceEEEEEeCCchHHHHHHHHHHHHhccccchHHHHHHhcCCCCccccccccCcccccccccCCCCHHHHH
Confidence 66667777778999999999999999999999998887888899999999876655555566777766677899999999
Q ss_pred HHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCccc
Q 004009 398 AVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVE 477 (779)
Q Consensus 398 AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~~sre~i~~~~~ 477 (779)
||..++.+++++|+||||||||+|+++++.++++....+||+|||||.|||+|.++|.+.+++++|+++.+++.+..+..
T Consensus 188 av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~~r~~~~~~~~ 267 (624)
T 2gk6_A 188 AVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVS 267 (624)
T ss_dssp HHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCTGGGSCCCTTT
T ss_pred HHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccccchhhccchh
Confidence 99999999999999999999999999999999875567999999999999999999999999999999999888888888
Q ss_pred hhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceecccccCCccccCCCCCEEEE
Q 004009 478 HLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLI 557 (779)
Q Consensus 478 ~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~~~L~~~~Fd~VII 557 (779)
..++|.+++..+. ..+++++.+++.+.++++..+.+.|+.+.+..++.+++.++||++||.++++..+...+||+|||
T Consensus 268 ~~tl~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l~~~~fd~viI 345 (624)
T 2gk6_A 268 FLALHNQIRNMDS--MPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILI 345 (624)
T ss_dssp TTBHHHHHTSCSS--CHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGGTTCCCSEEEE
T ss_pred hhhHHHHHHhccc--hHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchhhhcCCCCEEEE
Confidence 8889988876544 45667777777777777777778888888888889999999999999999988888889999999
Q ss_pred EcCCCCChhhhhhhhhcCCCeEEEEeCCCCCCceeechHHHHhccchhHHHHHHHCCCccEEeccccCCchHHHHHHHhh
Q 004009 558 DESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNS 637 (779)
Q Consensus 558 DEAsQatEpe~LipL~~~~~~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~g~~~~~L~~QYRmhp~I~~f~S~~ 637 (779)
|||+|+++|++|+|+..+++++||||||+||||++.+..+...|+..|+|+||...+..+++|++||||||+|++|+|..
T Consensus 346 DEAsQ~~e~~~li~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~~~I~~~~n~~ 425 (624)
T 2gk6_A 346 DESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNI 425 (624)
T ss_dssp TTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHH
T ss_pred ecccccCcHHHHHHHHhcCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcChhHHhhhHHh
Confidence 99999999999999988889999999999999999999888899999999999998888999999999999999999999
Q ss_pred hcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEcc
Q 004009 638 FYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITP 717 (779)
Q Consensus 638 FY~g~L~~~~s~~~r~~~~~~~~~p~~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITP 717 (779)
||+|+|.++.+...+......++|+..+.|++|+++.|.++....+.|+.|..||+.|.+++..|++.|+++.+||||||
T Consensus 426 fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~dIgVItp 505 (624)
T 2gk6_A 426 FYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITP 505 (624)
T ss_dssp HSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTCCGGGEEEECS
T ss_pred hcCcccccCCchhhhcccccCCCCCCCCCCEEEEEcCCcceecCCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 99999998887777766666789998899999999999888777889999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCcccccCCCeEEccCCCCCCCcCCEEEEEeeeeCCCCCcccccCC
Q 004009 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRYVKTK 778 (779)
Q Consensus 718 Y~~Qv~~L~~~L~~~~~~~~~~~~~V~V~TVD~FQGrEkDvIIlS~VRSn~~~~iGFL~d~ 778 (779)
|++|+.+|++.|...+.+.......|+|+|||+|||+|+|+||+|+||+|..+++|||.|+
T Consensus 506 y~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~ 566 (624)
T 2gk6_A 506 YEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP 566 (624)
T ss_dssp CHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCH
T ss_pred CHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCc
Confidence 9999999999998766543333457999999999999999999999999998899999874
No 4
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=1.3e-77 Score=709.84 Aligned_cols=512 Identities=27% Similarity=0.384 Sum_probs=385.5
Q ss_pred ceEEEEE-ecCCceEEEEEEccCCC-----CCcCCCCCCEEEEEecCCCCCCcceEEEEEEEeccccEEEEEeecCC--C
Q 004009 249 NVTIRWD-IGLNKKRVAYFVFPKED-----NELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQ--G 320 (779)
Q Consensus 249 ~~~~~~~-~~l~~k~~~~f~~~~~~-----~~~~l~~GD~v~l~~~g~~~~~~~~~~g~V~~v~~~~~v~l~l~~~~--~ 320 (779)
++.+.+. .|++|+.+..|...... ....|.+||.|.|..... . ..+...|+|+++.. ..|.|.+.... .
T Consensus 47 ~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~Gd~v~~~~~~~-~-~~~~~~g~v~~~~~-~~i~v~~~~~~~~~ 123 (646)
T 4b3f_X 47 KLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAAN-E-GSQLATGILTRVTQ-KSVTVAFDESHDFQ 123 (646)
T ss_dssp EEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCCTTCEEEEEETTT-T-SCCCEEEEEEEEET-TEEEEECC------
T ss_pred ceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCCCCCCEEEEEecCC-C-CCceEEEEEEEEeC-CEEEEEECCccccc
Confidence 4555554 68999999999876521 245799999999965444 2 23446789999975 45666664332 2
Q ss_pred CccccCCCceEEEeeccchHHHHHHHHHHHHhhhcchhhhHhhhhcCCchhhhhhhccCCCCCCCCCCCCCCHHHHHHHH
Q 004009 321 VPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVK 400 (779)
Q Consensus 321 ~p~~~~~~~~v~~~~~~~s~~R~~~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~ 400 (779)
........|++++.+++++|+||+.||..+..........+.+.|+|...+..... ..+.. ...+.||++|++||.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~~-~~~~~---~~~~~LN~~Q~~AV~ 199 (646)
T 4b3f_X 124 LSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASE-IHPLT---FFNTCLDTSQKEAVL 199 (646)
T ss_dssp -CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCCC-CCCCC---CSSTTCCHHHHHHHH
T ss_pred cccCCCCcEEEEEeccchHHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCCccc-cCccc---ccCCCCCHHHHHHHH
Confidence 23344567999999999999999999999987665566667778888754322111 11111 123679999999999
Q ss_pred Hhhc-CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCccchh
Q 004009 401 SVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHL 479 (779)
Q Consensus 401 ~aL~-~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~~sre~i~~~~~~l 479 (779)
.+|. ++++||+||||||||+|++++|.++++.+. +||||||||.|||+|++||...+.+++|+|+..+.. ..+...
T Consensus 200 ~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~-~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~--~~~~~~ 276 (646)
T 4b3f_X 200 FALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLL--ESIQQH 276 (646)
T ss_dssp HHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHHHHTTCCEEECSCCSSCC--HHHHTT
T ss_pred HHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEcCchHHHHHHHHHHHhcCCceEEecchhhhh--hhhhhh
Confidence 9996 679999999999999999999999998865 999999999999999999999999999999887632 112222
Q ss_pred hHHHHHhhccchh-HHHH-HHHHHhhh---------hhccCCch---HHHHHHHHHHHHHHHHhhccccceecccccCCc
Q 004009 480 TLHYQVRHLDTSE-KSEL-HKLQQLKD---------EQGELSSS---DEKKYKALKRATEREISQSADVICCTCVGAGDP 545 (779)
Q Consensus 480 ~l~~~v~~~~~~~-~~~l-~kl~~lk~---------~~~els~~---d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~~ 545 (779)
+++..+...+... ...+ +.+..+.. +...+... ..+.++...+....+.+..++||++||.+++..
T Consensus 277 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~ 356 (646)
T 4b3f_X 277 SLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASAD 356 (646)
T ss_dssp BHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSS
T ss_pred hHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhh
Confidence 3333333221100 0001 11110000 00001000 012223333344567899999999999998864
Q ss_pred ----cccCCCCCEEEEEcCCCCChhhhhhhhhcCCCeEEEEeCCCCCCceeechHHHHhccchhHHHHHHHCC--CccEE
Q 004009 546 ----RLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG--LKPIR 619 (779)
Q Consensus 546 ----~L~~~~Fd~VIIDEAsQatEpe~LipL~~~~~~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~g--~~~~~ 619 (779)
.+...+||+||||||+|++||++|+|+.. ++++||||||+||||++.+..+...|+..|+|+||.... ....+
T Consensus 357 ~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~~-~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~ 435 (646)
T 4b3f_X 357 GPLKLLPESYFDVVVIDECAQALEASCWIPLLK-ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRT 435 (646)
T ss_dssp SGGGGSCTTCCSEEEETTGGGSCHHHHTTTGGG-SSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEE
T ss_pred hHHHhhhhccCCEEEEcCccccchHHHHhhccc-cceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeee
Confidence 35566899999999999999999999964 799999999999999999999999999999999998753 33468
Q ss_pred eccccCCchHHHHHHHhhhcCCcccccCccccccCCCCCC--CCCCCCCCeEEEEeCCc---ceeccCCCCCCCHHHHHH
Q 004009 620 LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF--PWPVPNRPMFFYVQMGQ---EEISASGTSYLNRTEAAN 694 (779)
Q Consensus 620 L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~--~~p~~~~P~~f~~~~g~---ee~~~~~~S~~N~~EA~~ 694 (779)
|++||||||.|++|+|+.||+|+|+++.+...+....++. .++....|++|+++.|. +.....+.|+.|..||+.
T Consensus 436 L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~ 515 (646)
T 4b3f_X 436 LTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRL 515 (646)
T ss_dssp CCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHH
T ss_pred cccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHH
Confidence 9999999999999999999999999988777665444332 23345689999999886 333456789999999999
Q ss_pred HHHHHHHHHHCCCCCCeEEEEcccHHHHHHHHHHHHHcCCcccccCCCeEEccCCCCCCCcCCEEEEEeeeeCCCCCccc
Q 004009 695 VEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQRNRY 774 (779)
Q Consensus 695 V~~iV~~Ll~~gv~~~~IgIITPY~~Qv~~L~~~L~~~~~~~~~~~~~V~V~TVD~FQGrEkDvIIlS~VRSn~~~~iGF 774 (779)
|.++++.|++.|+++.+|||||||++|+.+|++.|... +.+|+|+|||+|||+|+|||||||||||..+.+||
T Consensus 516 V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~~-------~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGF 588 (646)
T 4b3f_X 516 VSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHR-------HPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGF 588 (646)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTT-------CTTCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCS
T ss_pred HHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHHHHHh-------CCCCEECChhhcccccCCEEEEEeccCCCCCCccc
Confidence 99999999999999999999999999999999998643 35799999999999999999999999999999999
Q ss_pred ccCC
Q 004009 775 VKTK 778 (779)
Q Consensus 775 L~d~ 778 (779)
|+|+
T Consensus 589 l~~~ 592 (646)
T 4b3f_X 589 LAED 592 (646)
T ss_dssp TTCH
T ss_pred cCCc
Confidence 9884
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.92 E-value=6.9e-25 Score=258.36 Aligned_cols=315 Identities=17% Similarity=0.224 Sum_probs=185.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhC---CCcEEEEcCcHHHHHHHHHHHHhc-C-----C
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG---QGQVLVCAPSNVAVDQLAEKISAT-G-----L 459 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~---~~rILV~ApSN~AVD~L~erL~~~-~-----l 459 (779)
..||++|++||... .+..+|.||||||||+|+++.|.+++..+ ..+||++|+||.|+++|.+||.+. + +
T Consensus 8 ~~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHhCC--CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 47999999999843 67889999999999999999999999863 368999999999999999999764 1 1
Q ss_pred eEEEecccccc---------ccCCccchh-------hHHHHHhhccch-----hHHHHHHHHHhhhhhc---cCC---ch
Q 004009 460 KVVRLCAKSRE---------AVSSPVEHL-------TLHYQVRHLDTS-----EKSELHKLQQLKDEQG---ELS---SS 512 (779)
Q Consensus 460 ~vvRl~~~sre---------~i~~~~~~l-------~l~~~v~~~~~~-----~~~~l~kl~~lk~~~~---els---~~ 512 (779)
.+.-+.+-... ........+ .+...+...... .......+..++...- .+. ..
T Consensus 86 ~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 165 (647)
T 3lfu_A 86 WVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNP 165 (647)
T ss_dssp EEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC----CC
T ss_pred EEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcCCCHHHHHhccch
Confidence 11111100000 000000000 000000000000 0000111111111110 010 00
Q ss_pred HHHHHHHHHHHHH-----HHHhhccccceeccccc-CCcccc---CCCCCEEEEEcCCCCChhh--hhhhhhcCCCeEEE
Q 004009 513 DEKKYKALKRATE-----REISQSADVICCTCVGA-GDPRLA---NFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVL 581 (779)
Q Consensus 513 d~k~~~~l~~~~~-----~~iL~~a~VI~~T~~~a-~~~~L~---~~~Fd~VIIDEAsQatEpe--~LipL~~~~~~lIL 581 (779)
..+.+..+.+.++ ...+...|++..+.... ..+.+. ..+|++|+|||+++++..+ .+..+....+++++
T Consensus 166 ~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~ 245 (647)
T 3lfu_A 166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245 (647)
T ss_dssp HHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECcccCCHHHHHHHHHHhcCCCEEEE
Confidence 1111111111111 11222233332222111 011111 2269999999999999887 33344445689999
Q ss_pred EeCCCCCCceeechHHHHhccchhHHHHHHHC--CCccEEeccccCCchHHHHHHHhhhcCCcccccCccccccCCCCCC
Q 004009 582 VGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659 (779)
Q Consensus 582 VGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~--g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~ 659 (779)
|||++| .|++.. |-....|.++... +...+.|..||||++.|.++++.+|+.+....+... +
T Consensus 246 vGD~~Q---sIy~fr----ga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~~---------~ 309 (647)
T 3lfu_A 246 VGDDDQ---SIYGWR----GAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKL---------W 309 (647)
T ss_dssp EECGGG---CCCGGG----TCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCCC---------B
T ss_pred EcCchh---hhcccc----CCCHHHHHHHHHhCCCCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCcc---------c
Confidence 999999 444322 3344556555543 346789999999999999999999987643211110 1
Q ss_pred CCCCCCCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEcccHHHHHHHHHHHHHcC
Q 004009 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNG 733 (779)
Q Consensus 660 ~~p~~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITPY~~Qv~~L~~~L~~~~ 733 (779)
+....+.++.++.... ...||+.|.+.|.++++.|+++.+|+||+|++.|...|.+.|...+
T Consensus 310 ~~~~~~~~~~~~~~~~------------~~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l~~~~ 371 (647)
T 3lfu_A 310 TDGADGEPISLYCAFN------------ELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQAS 371 (647)
T ss_dssp CSSCCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHHTT
T ss_pred cCCCCCCceEEEecCC------------hHHHHHHHHHHHHHHHHcCCCccCEEEEEeCchhHHHHHHHHHHCC
Confidence 1111233455544321 2469999999999999999999999999999999999999998765
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.89 E-value=1.1e-22 Score=236.65 Aligned_cols=225 Identities=21% Similarity=0.250 Sum_probs=151.0
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEecccc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~~s 468 (779)
..||++|++|+..++..++++|+||||||||+++..++..+...+ .+|+++|||+.|+++|.+++...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~~~~----------- 255 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVTGRT----------- 255 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHTSC-----------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEecCcHHHHHHhHhhhccc-----------
Confidence 469999999999999999999999999999999999998777665 59999999999999999876311
Q ss_pred ccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceecccccCCcccc
Q 004009 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (779)
Q Consensus 469 re~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~~~L~ 548 (779)
..++|..+.... + ......-.
T Consensus 256 ---------a~Tih~ll~~~~------------------------------------------------~--~~~~~~~~ 276 (574)
T 3e1s_A 256 ---------ASTVHRLLGYGP------------------------------------------------Q--GFRHNHLE 276 (574)
T ss_dssp ---------EEEHHHHTTEET------------------------------------------------T--EESCSSSS
T ss_pred ---------HHHHHHHHcCCc------------------------------------------------c--hhhhhhcc
Confidence 112222211000 0 00001112
Q ss_pred CCCCCEEEEEcCCCCChhhh--hhhhhcCCCeEEEEeCCCCCCceeechHHHHhccchhHHHHHHHCCCccEEeccccCC
Q 004009 549 NFRFRQVLIDESTQATEPEC--LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (779)
Q Consensus 549 ~~~Fd~VIIDEAsQatEpe~--LipL~~~~~~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~g~~~~~L~~QYRm 626 (779)
...+|+||||||+++..... |+.......++|||||+.||||+..+ +.|..+.. ..+.+.|+.+||+
T Consensus 277 ~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g----------~~~~~l~~-~~~~~~L~~~~R~ 345 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAG----------LPLLALAQ-AAPTIKLTQVYRQ 345 (574)
T ss_dssp CCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSSC----------CHHHHHHH-HSCEEECCCCCHH
T ss_pred cccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccCC----------cHHHHHHh-cCCEEEcceeEeC
Confidence 34799999999999987752 23333356799999999999998642 34555555 6678999999999
Q ss_pred c--hHHHHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHHHHHHHH
Q 004009 627 H--PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR 704 (779)
Q Consensus 627 h--p~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~ 704 (779)
. ..|..+++.+ ..|.+.... ....|+.....++ .+..+.+++.
T Consensus 346 ~~~s~I~~~a~~i-~~g~~~~~~------------------~d~~~~~~~~~~~------------~~~~i~~~~~---- 390 (574)
T 3e1s_A 346 AAKNPIIQAAHGL-LHGEAPAWG------------------DKRLNLTEIEPDG------------GARRVALMVR---- 390 (574)
T ss_dssp HHTCHHHHHHHHH-HTTCCCCCC------------------BTTEEEEECCSTT------------CHHHHHHHHH----
T ss_pred CCccHHHHHHHHH-hCCCCcccC------------------CCeEEEeCCCHHH------------HHHHHHHHHh----
Confidence 8 6799987654 444432100 1123333221111 1344444444
Q ss_pred CCCCC-CeEEEEcccHHH---HHHHHHHHHH
Q 004009 705 SGVVP-SQIGVITPYEGQ---RAYIVNYMSR 731 (779)
Q Consensus 705 ~gv~~-~~IgIITPY~~Q---v~~L~~~L~~ 731 (779)
|+.+ .+|.||||.+.. +..|.+.++.
T Consensus 391 -~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~ 420 (574)
T 3e1s_A 391 -ELGGPGAVQVLTPMRKGPLGMDHLNYHLQA 420 (574)
T ss_dssp -HTTSGGGCEEEESCSSSTTSHHHHHHHHHH
T ss_pred -ccCcccCeEEEEeecCCchhHHHHHHHHHH
Confidence 5665 899999998765 5555555443
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.88 E-value=1.2e-21 Score=222.33 Aligned_cols=244 Identities=15% Similarity=0.166 Sum_probs=153.5
Q ss_pred CCCCCCCHHHHHHHHHhhc-----CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCe
Q 004009 386 PGLPELNASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK 460 (779)
Q Consensus 386 ~~~~~LN~sQ~~AV~~aL~-----~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~ 460 (779)
..+..||+.|++|+..++. .+.++|.||||||||+++..++..|...+..+|+++||||.|+++|.+++.. .
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~---~ 97 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGK---E 97 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSS---C
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhcc---c
Confidence 3456899999999998764 3599999999999999999999999888766899999999999999998721 1
Q ss_pred EEEeccccccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceeccc
Q 004009 461 VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCV 540 (779)
Q Consensus 461 vvRl~~~sre~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~ 540 (779)
..++|..+..... . . .... .+..
T Consensus 98 -----------------~~T~h~~~~~~~~---------------~--~--------------------~~~~-~~~~-- 120 (459)
T 3upu_A 98 -----------------ASTIHSILKINPV---------------T--Y--------------------EENV-LFEQ-- 120 (459)
T ss_dssp -----------------EEEHHHHHTEEEE---------------E--C--------------------SSCE-EEEE--
T ss_pred -----------------hhhHHHHhccCcc---------------c--c--------------------cccc-hhcc--
Confidence 1133332221100 0 0 0000 0000
Q ss_pred ccCCccccCCCCCEEEEEcCCCCChhh--hhhhhhcCCCeEEEEeCCCCCCceeechHHHHhccchhHHHHHHHCCCccE
Q 004009 541 GAGDPRLANFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPI 618 (779)
Q Consensus 541 ~a~~~~L~~~~Fd~VIIDEAsQatEpe--~LipL~~~~~~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~g~~~~ 618 (779)
.......++++||||||++.+... .|+.+.....++++|||+.||+|+..+... ..+ ..++. ..+...+
T Consensus 121 ---~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~--~~l-~~~~~---~~~~~~~ 191 (459)
T 3upu_A 121 ---KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENT--AYI-SPFFT---HKDFYQC 191 (459)
T ss_dssp ---CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCS--CCC-CGGGT---CTTEEEE
T ss_pred ---cccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcch--HhH-HHHHh---cCCCcEE
Confidence 001112369999999999987654 222222356799999999999998754210 011 11121 1355678
Q ss_pred EeccccCCchHHHHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHH
Q 004009 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI 698 (779)
Q Consensus 619 ~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~i 698 (779)
.|+.+||+++.|.++++.+..+..+.. + ......++. ..+. .| +...
T Consensus 192 ~L~~~~R~~~~I~~~a~~lr~g~~~~~------~---------~~~~~~v~~--~~~~-------------~~---~~~~ 238 (459)
T 3upu_A 192 ELTEVKRSNAPIIDVATDVRNGKWIYD------K---------VVDGHGVRG--FTGD-------------TA---LRDF 238 (459)
T ss_dssp ECCCCCCCCCHHHHHHHHHHTTCCCCC------E---------EETTEEEEE--CCSS-------------SS---HHHH
T ss_pred eceeeeeCCcHHHHHHHHHHcCCCcch------h---------ccCCCCeEe--cCch-------------HH---HHHH
Confidence 999999999999999988754332110 0 000111111 1111 11 2233
Q ss_pred HHHHHHCCCCCC---eEEEEcccHHHHHHHHHHHHH
Q 004009 699 VTTFLRSGVVPS---QIGVITPYEGQRAYIVNYMSR 731 (779)
Q Consensus 699 V~~Ll~~gv~~~---~IgIITPY~~Qv~~L~~~L~~ 731 (779)
+......+..++ +++||++.++|+..+.+.|+.
T Consensus 239 i~~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~ 274 (459)
T 3upu_A 239 MVNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRK 274 (459)
T ss_dssp HHHHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhhceEEEEehHhHHHHHHHHHHH
Confidence 333333222334 999999999999999988875
No 8
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.88 E-value=3.8e-22 Score=238.65 Aligned_cols=311 Identities=17% Similarity=0.205 Sum_probs=181.9
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh---CCCcEEEEcCcHHHHHHHHHHHHhc-C-----C
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT-G-----L 459 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~---~~~rILV~ApSN~AVD~L~erL~~~-~-----l 459 (779)
..||++|++||... .+..+|.|+||||||+|+++.|.+|+.. +..+||++|+||+|+++|.+|+.+. + +
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 46999999999864 6788999999999999999999999875 3468999999999999999999764 1 1
Q ss_pred eEEEeccccc-------ccc--CCccchh------h-HHHHHhhccch-----hHHHHHHHHHhhhhhccCCch------
Q 004009 460 KVVRLCAKSR-------EAV--SSPVEHL------T-LHYQVRHLDTS-----EKSELHKLQQLKDEQGELSSS------ 512 (779)
Q Consensus 460 ~vvRl~~~sr-------e~i--~~~~~~l------~-l~~~v~~~~~~-----~~~~l~kl~~lk~~~~els~~------ 512 (779)
.+.-+.+-.. ... ......+ . +...+..+... .......+..++... ++..
T Consensus 88 ~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~--~~~~~~~~~~ 165 (724)
T 1pjr_A 88 WISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNEL--LPPEQFAKRA 165 (724)
T ss_dssp EEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTT--CCHHHHTTC-
T ss_pred EEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcC--CCHHHHHHhc
Confidence 1111100000 000 0000000 0 00001100000 000011111111110 0000
Q ss_pred ---HHHHHHHHHHHHHH-----HHhhccccceeccccc-CCcccc---CCCCCEEEEEcCCCCChhhh--hhhhhcCCCe
Q 004009 513 ---DEKKYKALKRATER-----EISQSADVICCTCVGA-GDPRLA---NFRFRQVLIDESTQATEPEC--LIPLVLGAKQ 578 (779)
Q Consensus 513 ---d~k~~~~l~~~~~~-----~iL~~a~VI~~T~~~a-~~~~L~---~~~Fd~VIIDEAsQatEpe~--LipL~~~~~~ 578 (779)
.......+...+++ ..+...|++.-+.... ..+.+. ..+|++|+|||+|+++..+. +-.|.....+
T Consensus 166 ~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~ 245 (724)
T 1pjr_A 166 STYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQN 245 (724)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHTTTCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhCHHHHHHHHhhCCEEEEEhHhcCCHHHHHHHHHHHcCCCe
Confidence 01111111111111 1233333333322211 111111 23799999999999999873 3334333468
Q ss_pred EEEEeCCCCCCceeechHHHHhccchhHHHHHHH--CCCccEEeccccCCchHHHHHHHhhhcCCcccccCccccccCCC
Q 004009 579 VVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL--LGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656 (779)
Q Consensus 579 lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~--~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~ 656 (779)
+++|||++| .|++.. |-....|.++.. .+...+.|..|||+++.|.+++|.++..+.-....
T Consensus 246 l~vVGD~~Q---sIY~fR----GA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k--------- 309 (724)
T 1pjr_A 246 ICAVGDADQ---SIYRWR----GADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK--------- 309 (724)
T ss_dssp EEEEECGGG---CCCGGG----TCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCC---------
T ss_pred EEEEECchh---hccccc----CCCHHHHHHHHHHCCCCcEEECCCCCCCCHHHHHHHHHHHHhCccccCc---------
Confidence 999999999 454432 222333444332 24567899999999999999999999765422110
Q ss_pred CCCCCCC--CCCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCeEEEEcccHHHHHHHHHHHHHcC
Q 004009 657 IDFPWPV--PNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR-SGVVPSQIGVITPYEGQRAYIVNYMSRNG 733 (779)
Q Consensus 657 ~~~~~p~--~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~-~gv~~~~IgIITPY~~Qv~~L~~~L~~~~ 733 (779)
..|+. .+.++.++.... ...||..|++.|.+++. .|+++++|+||++.++|...|.+.|.+.+
T Consensus 310 --~l~~~~~~g~~i~~~~~~~------------~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L~~~g 375 (724)
T 1pjr_A 310 --RIWTENPEGKPILYYEAMN------------EADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKAN 375 (724)
T ss_dssp --CCBCSSCCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHTT
T ss_pred --ccccccCCCCceEEEecCC------------HHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHHHHHHHHHcC
Confidence 11221 233454443221 24689999999999987 78999999999999999999999998765
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.5e-21 Score=231.61 Aligned_cols=310 Identities=16% Similarity=0.164 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh---CCCcEEEEcCcHHHHHHHHHHHHhc-C------C
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT-G------L 459 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~---~~~rILV~ApSN~AVD~L~erL~~~-~------l 459 (779)
.||++|++||... .+..+|.|+||||||+|+++.|.+|+.. +..+||++|+||.|+++|.+|+.+. + +
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 5999999999864 6889999999999999999999998876 3568999999999999999999764 1 1
Q ss_pred eEEEeccccccc---------cCCccchhh---HHHHHhhcc----chhHHHH----HHHHHhhhhhccCCchH------
Q 004009 460 KVVRLCAKSREA---------VSSPVEHLT---LHYQVRHLD----TSEKSEL----HKLQQLKDEQGELSSSD------ 513 (779)
Q Consensus 460 ~vvRl~~~sre~---------i~~~~~~l~---l~~~v~~~~----~~~~~~l----~kl~~lk~~~~els~~d------ 513 (779)
.+.-+.+-.... .......+. ....++... ....... ..+..++... +...+
T Consensus 80 ~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~--~~~~~~~~~~~ 157 (673)
T 1uaa_A 80 MISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDL--KTPSQAAASAI 157 (673)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTT--CCTTHHHHTCC
T ss_pred EEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHcC--CCHHHHHHHhh
Confidence 111111000000 000000000 000000000 0000001 1111111110 11100
Q ss_pred ---HHHHHHHHHHHH-----HHHhhccccceecccccC-Cccc---cCCCCCEEEEEcCCCCChhhh--hhhhhcCCCeE
Q 004009 514 ---EKKYKALKRATE-----REISQSADVICCTCVGAG-DPRL---ANFRFRQVLIDESTQATEPEC--LIPLVLGAKQV 579 (779)
Q Consensus 514 ---~k~~~~l~~~~~-----~~iL~~a~VI~~T~~~a~-~~~L---~~~~Fd~VIIDEAsQatEpe~--LipL~~~~~~l 579 (779)
......+...++ ...+...|++..+..... .+.+ ...+|++|+|||+++++..+. +-.|.....++
T Consensus 158 ~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l 237 (673)
T 1uaa_A 158 GERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARF 237 (673)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHTTTCCE
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEeccccCCHHHHHHHHHHhcCCCeE
Confidence 111111111111 112222233322211110 1111 124899999999999998873 33344345789
Q ss_pred EEEeCCCCCCceeechHHHHhccchhHHHHHHH--CCCccEEeccccCCchHHHHHHHhhhcCCcccccCccccccCCCC
Q 004009 580 VLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL--LGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGI 657 (779)
Q Consensus 580 ILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~--~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~ 657 (779)
++|||++| .|++.. |-....|.++.. .+...+.|..|||+++.|.++++.+|..+......
T Consensus 238 ~~vGD~~Q---sIy~fr----ga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~~---------- 300 (673)
T 1uaa_A 238 TVVGDDDQ---SIYSWR----GARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEK---------- 300 (673)
T ss_dssp EEECCGGG---CCCGGG----TBCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSCC----------
T ss_pred EEEeCchh---hhhhcc----CCCHHHHHHHHHhCCCCeEEECCCCCCCChHHHHHHHHHHHhchhcccc----------
Confidence 99999999 444322 223445555544 24567899999999999999999999764321100
Q ss_pred CCCCC--CCCCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHHHHHHH-HCCCCCCeEEEEcccHHHHHHHHHHHHHcC
Q 004009 658 DFPWP--VPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-RSGVVPSQIGVITPYEGQRAYIVNYMSRNG 733 (779)
Q Consensus 658 ~~~~p--~~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll-~~gv~~~~IgIITPY~~Qv~~L~~~L~~~~ 733 (779)
..|+ ..+.++.++.... ...|++.|++.|.+++ ..|+++.+|+||++.+.|...|.+.|...+
T Consensus 301 -~l~~~~~~g~~i~~~~~~~------------~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~~~~~l~~~L~~~g 366 (673)
T 1uaa_A 301 -RLFSELGYGAELKVLSANN------------EEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNR 366 (673)
T ss_dssp -CCCBSSCCCCCBEEEECSS------------HHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGTTHHHHHHHTT
T ss_pred -cccccCCCCCCceEEecCC------------HHHHHHHHHHHHHHHHhccCCCccCEEEEEechhhHHHHHHHHHHCC
Confidence 0121 1123444433221 2468999999999988 679999999999999999999999998765
No 10
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.78 E-value=5.8e-19 Score=207.07 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=130.4
Q ss_pred CHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh---CCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEecccc
Q 004009 392 NASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (779)
Q Consensus 392 N~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~---~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~~s 468 (779)
++.|+.|+..++..++++|+||||||||+|++.++..+.+. ...+|+++|||+.|+++|.+.+......+ .+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHHH
Confidence 68999999999999999999999999999999999888753 33589999999999999999875431110 010000
Q ss_pred ccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceecccccCCcccc
Q 004009 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (779)
Q Consensus 469 re~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~~~L~ 548 (779)
+..+ +....++|..+..... ... + ......
T Consensus 230 ~~~~--~~~~~Tih~ll~~~~~-----------------------~~~------------~-------------~~~~~~ 259 (608)
T 1w36_D 230 KKRI--PEDASTLHRLLGAQPG-----------------------SQR------------L-------------RHHAGN 259 (608)
T ss_dssp CCSC--SCCCBTTTSCC-----------------------------------------------------------CTTS
T ss_pred Hhcc--chhhhhhHhhhccCCC-----------------------chH------------H-------------HhccCC
Confidence 0000 0011122211100000 000 0 000011
Q ss_pred CCCCCEEEEEcCCCCChhh--hhhhhhcCCCeEEEEeCCCCCCceeechH------HHHhccchhHHHHHHHCC------
Q 004009 549 NFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKK------AARAGLAQSLFERLVLLG------ 614 (779)
Q Consensus 549 ~~~Fd~VIIDEAsQatEpe--~LipL~~~~~~lILVGD~~QLpPvv~s~~------a~~~gl~~SLFeRLi~~g------ 614 (779)
...+|+||||||+++..+. .++.......++||+||+.||||+..+.. ....|+..++++++....
T Consensus 260 ~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~ 339 (608)
T 1w36_D 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 (608)
T ss_dssp CCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCC
T ss_pred CCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccc
Confidence 2379999999999998764 33333345689999999999999975431 123578889999887531
Q ss_pred -----Cc-----cEEeccccCCchH--HHHHHHhhhcCCc
Q 004009 615 -----LK-----PIRLQVQYRMHPS--LSEFPSNSFYEGT 642 (779)
Q Consensus 615 -----~~-----~~~L~~QYRmhp~--I~~f~S~~FY~g~ 642 (779)
.+ .++|+.+||+++. |..+++.+ ..|.
T Consensus 340 ~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~ 378 (608)
T 1w36_D 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGD 378 (608)
T ss_dssp CSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCH
T ss_pred ccccccccccccEEecceeeeeCCcchHHHHHHHH-hcCC
Confidence 11 4799999999977 99987554 4453
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.70 E-value=1.1e-16 Score=179.11 Aligned_cols=229 Identities=18% Similarity=0.212 Sum_probs=140.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCccchhhHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQ 484 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~~sre~i~~~~~~l~l~~~ 484 (779)
..+.+|.|+||||||+.+.+++. ..++||+|||+.|++++.+++.+.+.. ........+++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~~~~-----------~~~~~~V~T~dsf 223 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANASGII-----------VATKDNVRTVDSF 223 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTTSCC-----------CCCTTTEEEHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhcCcc-----------ccccceEEEeHHh
Confidence 47899999999999999877653 158999999999999999998543110 0000111122211
Q ss_pred HhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceecccccCCccccCCCCCEEEEEcCCCCC
Q 004009 485 VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQAT 564 (779)
Q Consensus 485 v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQat 564 (779)
+ ++.. ......+|+||||||+++.
T Consensus 224 L-------------------------------------------~~~~-------------~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 224 L-------------------------------------------MNYG-------------KGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp H-------------------------------------------HTTT-------------SSCCCCCSEEEEETGGGSC
T ss_pred h-------------------------------------------cCCC-------------CCCCCcCCEEEEeCcccCC
Confidence 1 1100 0112359999999999887
Q ss_pred hhhh--hhhhhcCCCeEEEEeCCCCCCceeechHHHHhccchhHHHHHHHCCCccEEeccccCCchHHHHHHHhhhcCCc
Q 004009 565 EPEC--LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGT 642 (779)
Q Consensus 565 Epe~--LipL~~~~~~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~ 642 (779)
.... ++.+ ..+.++||+||++||||+..... ..+..+ |.++. ......+.++|||.+.++.|.+.. |++.
T Consensus 248 ~~~l~~l~~~-~~~~~vilvGD~~Qlp~v~~~~~---~~~~~~-~~~l~--~~~~~~~~~SyR~p~dv~~lLs~l-Y~~~ 319 (446)
T 3vkw_A 248 TGCVNFLVEM-SLCDIAYVYGDTQQIPYINRVTG---FPYPAH-FAKLE--VDEVETRRTTLRCPADVTHFLNQR-YEGH 319 (446)
T ss_dssp HHHHHHHHHH-TTCSEEEEEECTTSCCCCCCSTT---CCCCHH-HHSCC--CSEEEEECEESSCCHHHHHHHHTT-SSSC
T ss_pred HHHHHHHHHh-CCCCEEEEecCcccccCcccCCC---ccchhh-hhhcc--cCcEEEeeeEeCCCHHHHHHHHhh-cCCc
Confidence 6553 2233 34699999999999999976432 111111 22221 123457899999999999999876 7765
Q ss_pred ccccCccccccCCCCCCCCCCCCCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEcccHHHH
Q 004009 643 LQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQR 722 (779)
Q Consensus 643 L~~~~s~~~r~~~~~~~~~p~~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITPY~~Qv 722 (779)
+...... ...+.+....+..... . ...++ .--|||+..+.+
T Consensus 320 V~t~s~~---------------~~sv~~~~I~~~~~~~--------~---------------~~~~~-~g~iLtftq~~k 360 (446)
T 3vkw_A 320 VMCTSSE---------------KKSVSQEMVSGAASIN--------P---------------VSKPL-KGKILTFTQSDK 360 (446)
T ss_dssp CEECCCC---------------CCCEEEEECCCGGGCC--------T---------------TTSCC-CSEEEESSHHHH
T ss_pred eEECCCc---------------CceEEEeccccccccc--------c---------------ccCCC-CCeEEEcCHHHH
Confidence 5421110 1122332222211110 0 00122 236778877777
Q ss_pred HHHHHHHHHcCCcccccCCCeE-EccCCCCCCCcCCEEEEEeeeeCC
Q 004009 723 AYIVNYMSRNGALRQQLYKEIE-VASVDSFQGREKDYIILSCVRSNE 768 (779)
Q Consensus 723 ~~L~~~L~~~~~~~~~~~~~V~-V~TVD~FQGrEkDvIIlS~VRSn~ 768 (779)
..|.+. .+. +.||+++||.|+|.|.+ ||.+.
T Consensus 361 ~~L~~~-------------G~~~~~Tv~e~QG~tf~~Vtl--vr~~~ 392 (446)
T 3vkw_A 361 EALLSR-------------GYADVHTVHEVQGETYADVSL--VRLTP 392 (446)
T ss_dssp HHHHTT-------------TCCSCEETGGGTTCCEEEEEE--EECCC
T ss_pred HHHHHh-------------CCCCccCHHHcCCcccCeEEE--EECCC
Confidence 766531 234 89999999999999886 66654
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.62 E-value=1.4e-15 Score=191.55 Aligned_cols=175 Identities=17% Similarity=0.149 Sum_probs=106.6
Q ss_pred CCCEEEEEcCCCCChhhhhh--hhhcC---CCeEEEEeCCCCCCceeechHHHHhccchhHHHHHHHC-----C--CccE
Q 004009 551 RFRQVLIDESTQATEPECLI--PLVLG---AKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL-----G--LKPI 618 (779)
Q Consensus 551 ~Fd~VIIDEAsQatEpe~Li--pL~~~---~~~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~-----g--~~~~ 618 (779)
+|++|+|||+|+.+..+.-+ .|... ..++++|||++| .|++.. |-...+|...... + ...+
T Consensus 400 ~~~~IlVDEfQDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Q---sIY~FR----gAd~~~f~~~~~~~~~~~~~~~~~i 472 (1232)
T 3u4q_A 400 QFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQ---SIYRFR----LAEPLLFLSKYKRFTESGEGTGRKI 472 (1232)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHSCSCTTSSCEEEEECGGG---CCCTTT----TCCTHHHHHHHHHSBSSCTTSCEEE
T ss_pred CCCEEEEEccccCCHHHHHHHHHHhcCCCCCCcEEEEeCchH---HhHhcc----CCCHHHHHHHHHHhhhhcCCCCcEe
Confidence 69999999999999888322 23222 468999999999 444332 2344566555432 1 2568
Q ss_pred EeccccCCchHHHHHHHhhhcCCcccc--cCc--cccccCCCCCCCCCC-CCCCeEEEEeCCcceec-cCCC-C-CCCHH
Q 004009 619 RLQVQYRMHPSLSEFPSNSFYEGTLQN--GVT--INERQSSGIDFPWPV-PNRPMFFYVQMGQEEIS-ASGT-S-YLNRT 690 (779)
Q Consensus 619 ~L~~QYRmhp~I~~f~S~~FY~g~L~~--~~s--~~~r~~~~~~~~~p~-~~~P~~f~~~~g~ee~~-~~~~-S-~~N~~ 690 (779)
.|..|||+++.|.++.|.+|-...-.. ... .......+. .++. ...++-++...+..... .... . -....
T Consensus 473 ~L~~NyRS~~~Il~~~n~lf~~~~~~~~~~i~y~~~~~l~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (1232)
T 3u4q_A 473 DLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGA--AYPDNDETETELLLIDNAEDTDASEEAEELETVQF 550 (1232)
T ss_dssp EECEESSSCHHHHHHHHHHHHTTSCHHHHSSCCCTTTSCEECC--CCCCCSSCSEEEEEEC-------------CHHHHH
T ss_pred ECCCCCCCChHHHHHHHHHHhhccccccccCCCchhhhcccCc--cCccCCCCCeEEEEecCCccccccccccccccHHH
Confidence 899999999999999999996541100 000 000000000 1221 12233333322111000 0000 0 11246
Q ss_pred HHHHHHHHHHHHHHCC-------------CCCCeEEEEcccHHHHHHHHHHHHHcCC
Q 004009 691 EAANVEKIVTTFLRSG-------------VVPSQIGVITPYEGQRAYIVNYMSRNGA 734 (779)
Q Consensus 691 EA~~V~~iV~~Ll~~g-------------v~~~~IgIITPY~~Qv~~L~~~L~~~~~ 734 (779)
||..|.+.|.+|+..| +.+.+|+||++.+.|...|.+.|...+.
T Consensus 551 Ea~~iA~~I~~l~~~~~~v~d~~~~~~r~~~~~DIAIL~R~~~~~~~i~~~L~~~gI 607 (1232)
T 3u4q_A 551 EAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGI 607 (1232)
T ss_dssp HHHHHHHHHHHHHTSCCCBC---CCCCBCCCSTTEEEEESSSSSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhcCCceecccccccCCCCcCCEEEEEECchhHHHHHHHHhHCCC
Confidence 8899999999998764 6789999999999999999999988663
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.43 E-value=4.1e-13 Score=168.54 Aligned_cols=172 Identities=15% Similarity=0.175 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCChhhh--hhhhhc--CCCeEEEEeCCCCCCceeechHHHHhccchhHHHHHHHCCCccEEeccccCC
Q 004009 551 RFRQVLIDESTQATEPEC--LIPLVL--GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (779)
Q Consensus 551 ~Fd~VIIDEAsQatEpe~--LipL~~--~~~~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~g~~~~~L~~QYRm 626 (779)
+|++|+|||+|+++..+. +-.|.. ....+++|||++| .|++...+ ....|.++.......+.|.+|||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQ---SIY~FRGA----d~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ---AIYAFRGA----DIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGG---CCCGGGTC----CHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCcc---ccccCcCC----CHHHHHHHHHhcCCceeCCCCcCC
Confidence 599999999999999883 333432 2468999999999 45443322 122233333322457899999999
Q ss_pred chHHHHHHHhhhcCCccc---ccCccccc--cCCCCCCCCCCC---CCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHH
Q 004009 627 HPSLSEFPSNSFYEGTLQ---NGVTINER--QSSGIDFPWPVP---NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI 698 (779)
Q Consensus 627 hp~I~~f~S~~FY~g~L~---~~~s~~~r--~~~~~~~~~p~~---~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~i 698 (779)
++.|.++.|.+|-...-. ........ ...+....|+.. ..++.++...+.. .+..-....||+.|.+.
T Consensus 450 ~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~ea~~iA~~ 525 (1180)
T 1w36_B 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----CGVGDYQSTMAQVCAAQ 525 (1180)
T ss_dssp CHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCSSC----CCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCCCc----cCcchHHHHHHHHHHHH
Confidence 999999999988543210 00000000 000000001100 1234333222110 00011124689999999
Q ss_pred HHHHHH---------------CCCCCCeEEEEcccHHHHHHHHHHHHHcC
Q 004009 699 VTTFLR---------------SGVVPSQIGVITPYEGQRAYIVNYMSRNG 733 (779)
Q Consensus 699 V~~Ll~---------------~gv~~~~IgIITPY~~Qv~~L~~~L~~~~ 733 (779)
|.+|+. .|+++.+|+||++.+.|...|.+.|...+
T Consensus 526 I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L~~~g 575 (1180)
T 1w36_B 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLE 575 (1180)
T ss_dssp HHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHHHHCC
Confidence 998886 35788999999999999999999998765
No 14
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.39 E-value=2.5e-12 Score=161.43 Aligned_cols=148 Identities=11% Similarity=0.145 Sum_probs=97.1
Q ss_pred CCEEEEEcCCCCChhhh--hhhhhcCCCeEE--EEeC--------CCCCCceeechHHHHhccchhHHHHHHH-CCC---
Q 004009 552 FRQVLIDESTQATEPEC--LIPLVLGAKQVV--LVGD--------HCQLGPVIMCKKAARAGLAQSLFERLVL-LGL--- 615 (779)
Q Consensus 552 Fd~VIIDEAsQatEpe~--LipL~~~~~~lI--LVGD--------~~QLpPvv~s~~a~~~gl~~SLFeRLi~-~g~--- 615 (779)
.++|+|||+++.+..+. +-.|...++++. +||| ++| .|+....+ ....|.++.. .++
T Consensus 202 ~~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~Q---sIY~~rga----~~~~l~~~~~~~~~~~~ 274 (1166)
T 3u4q_B 202 GAHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHEL---ELFRMTGK----TYYRLHQKAKELNLDIT 274 (1166)
T ss_dssp TCEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTT---CTTHHHHH----HHHHHHHHHHHTTCCEE
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCC---CcchhHHH----HHHHHHHHHHHcCCCcc
Confidence 38999999999998883 333333345555 6699 566 33332221 1222333332 233
Q ss_pred ccEEeccccCCchHHHHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCcceeccCCCCCCCHHHHHHH
Q 004009 616 KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANV 695 (779)
Q Consensus 616 ~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V 695 (779)
..+.|..|||+.+.|.++.++.+.... ..+|+..+.++.++..... ..|++.|
T Consensus 275 ~~~~L~~nyRs~~~il~~i~~~~~~~~---------------~~~~~~~~~~i~i~~~~~~------------~~Ea~~i 327 (1166)
T 3u4q_B 275 YKELSGTERHTKTPELAHLEAQYEARP---------------AIPYAEKQEALTVMQAANR------------RAELEGI 327 (1166)
T ss_dssp EEEECSCSTTTTCHHHHHHHHSSSCSS---------------CCCCCSCCSSEEEEEESSH------------HHHHHHH
T ss_pred cceecCCCCCCCCHHHHHHHHhHhhcC---------------CCccCCCCCCeEEEEcCCh------------HHHHHHH
Confidence 367899999999999998876543210 0122222344444443221 3589999
Q ss_pred HHHHHHHHH-CCCCCCeEEEEcccH-HHHHHHHHHHHHcC
Q 004009 696 EKIVTTFLR-SGVVPSQIGVITPYE-GQRAYIVNYMSRNG 733 (779)
Q Consensus 696 ~~iV~~Ll~-~gv~~~~IgIITPY~-~Qv~~L~~~L~~~~ 733 (779)
++.|.+++. .|+++.+|+||++.+ .|...|...|.+.+
T Consensus 328 a~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~g 367 (1166)
T 3u4q_B 328 AREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYE 367 (1166)
T ss_dssp HHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcC
Confidence 999999988 799999999999998 58999999998765
No 15
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.75 E-value=6.6e-08 Score=99.80 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCe-EEEecc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK-VVRLCA 466 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~-vvRl~~ 466 (779)
..|++.|.+|+..++..+-.+|.||+|+|||.++..++..+ ..++|+++|+...++++.+++.+.+++ +..+..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g 166 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG 166 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESS
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 47999999999998887779999999999999877766543 469999999999999999999876665 544443
No 16
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.75 E-value=3.8e-08 Score=103.78 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (779)
.|++.|.+|+..++..+-.+|.+|+|+|||.++..++..++..+..++|+++|++..+++..+++.+.+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 689999999999988777899999999999999888877777666699999999999999999997753
No 17
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.74 E-value=1.4e-08 Score=101.41 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh-----CCCcEEEEcCcHHHHHH-HHHHHHh
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-----GQGQVLVCAPSNVAVDQ-LAEKISA 456 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~-----~~~rILV~ApSN~AVD~-L~erL~~ 456 (779)
..|++.|.+|+..++...-.+|.+|+|||||.+....+..++.. ...++|+++|+...+++ +.+.+.+
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 46899999999999987889999999999999988877766543 24699999999999888 5555543
No 18
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.73 E-value=5.2e-08 Score=97.06 Aligned_cols=70 Identities=24% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHH-----hCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK-----QGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~-----~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
...+++.|.+|+..++...-.+|++|+|||||.+....+...+. ....++|+++|+...++++.+++.+.
T Consensus 21 ~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 21 LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 34689999999999998888999999999999986555444432 23458999999999999999999875
No 19
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=98.68 E-value=6.6e-08 Score=95.20 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=80.7
Q ss_pred ccccCCchHHHHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCcceeccCCCCCCCHHHHHHHHHHHH
Q 004009 621 QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVT 700 (779)
Q Consensus 621 ~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~P~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~ 700 (779)
++|||++++|++|++.++.++.-. . . .......|.++.. ... ..|+..|.+.+.
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~~---~-------~---~~~~G~~p~~~~~-~~~------------~~e~~~i~~~I~ 55 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEAV---T-------A---FDRQGDLPNVVVT-PNF------------EAGVDQVVDQLA 55 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC---------------------CCCCCCEEEEE-SSH------------HHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcc---c-------C---CCCCCCCCEEEEe-CCH------------HHHHHHHHHHHH
Confidence 579999999999999888654210 0 0 0111233444322 111 357888888888
Q ss_pred HHHHCCCCCCeEEEEcccHHHHHHHHHHHHHcCCcc-------cccCCCeEEccCCCCCCCcCCEEEEEeeee
Q 004009 701 TFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALR-------QQLYKEIEVASVDSFQGREKDYIILSCVRS 766 (779)
Q Consensus 701 ~Ll~~gv~~~~IgIITPY~~Qv~~L~~~L~~~~~~~-------~~~~~~V~V~TVD~FQGrEkDvIIlS~VRS 766 (779)
. ...| +.+||||++.+.|...|.+.|...+... ......|.|.|++.+||.|+|.||+..+-.
T Consensus 56 ~-~~~g--~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~ 125 (174)
T 3dmn_A 56 M-NDSE--RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQ 125 (174)
T ss_dssp H-HHHT--TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBT
T ss_pred H-hccC--CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCc
Confidence 7 5555 6899999999999999999998764211 112357999999999999999999976543
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.65 E-value=3.7e-08 Score=98.14 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++.|.+|+..++...-.+|.+|+|||||.+....+...+.. ...++|+++||...+.++.+++.+.
T Consensus 23 ~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 23 WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 456899999999999988889999999999998765444433222 3348999999999999999988764
No 21
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.63 E-value=1.9e-07 Score=94.23 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++.|.+|+..++...-.+|.+|.|||||.+....+...+.. +..++|+++||...++++.+.+.+.
T Consensus 34 ~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 34 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 346899999999999987779999999999998776655554433 2348999999999999999888764
No 22
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.62 E-value=1.2e-07 Score=95.82 Aligned_cols=69 Identities=26% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHH-HHHHHHHh-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAA-IVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~-iI~~L~~~-~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..+++.|.+|+..++...-.+|.+|+|||||.+... ++..+... ...++|+++|+...++++.+.+.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 468899999999999877899999999999988543 33333222 3458999999999999999988764
No 23
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.62 E-value=1.8e-07 Score=95.45 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHH-HHH-----hCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYH-MAK-----QGQGQVLVCAPSNVAVDQLAEKISATG 458 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~-L~~-----~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (779)
...+++.|.+|+..++...-.+|++|.|||||.+....+.+ +.+ .+..++|+++||...+.++.+++.+.+
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 45689999999999998888999999999999986654444 333 234589999999999999999987653
No 24
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.61 E-value=1.2e-07 Score=96.45 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHH-HHH-------hCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYH-MAK-------QGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~-L~~-------~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..+++.|.+|+..++...-.+|.+|.|||||.+....+.. +.. ....++|+++||...+.++.+++.+.
T Consensus 41 ~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 4688999999999998888899999999999875543333 322 14458999999999999999998775
No 25
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.59 E-value=5.6e-07 Score=92.94 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=57.8
Q ss_pred CCCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhC-----------CCcEEEEcCcHHHHHHHHHHHH
Q 004009 387 GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG-----------QGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 387 ~~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~-----------~~rILV~ApSN~AVD~L~erL~ 455 (779)
++..+++.|.+|+..++...-.+|++|.|||||.+....+.+.+... ..++|+++||...+.++.+++.
T Consensus 42 g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 121 (253)
T 1wrb_A 42 SYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQ 121 (253)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHH
Confidence 45678999999999999888899999999999988665554444321 2489999999999999999887
Q ss_pred hc
Q 004009 456 AT 457 (779)
Q Consensus 456 ~~ 457 (779)
+.
T Consensus 122 ~~ 123 (253)
T 1wrb_A 122 KF 123 (253)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 26
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.59 E-value=3.1e-07 Score=95.26 Aligned_cols=70 Identities=21% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHH-HHHHhC-CCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY-HMAKQG-QGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~-~L~~~~-~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++.|.+|+..++...-.++.+|.|||||.+....+. .+...+ ..++||++||...++++.+++.+.
T Consensus 63 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3468999999999999888899999999999988654444 444443 347999999999999999888654
No 27
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.55 E-value=2.8e-07 Score=104.94 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.|++.|.+||..++...-.+|.||.|+|||.+...++..++..+..++||++|+...+++..+++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 68999999999999877889999999999999988888777776669999999999999999999765
No 28
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.55 E-value=1.9e-07 Score=95.88 Aligned_cols=69 Identities=28% Similarity=0.246 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..+++.|.+|+..++...-.+|.+|+|||||.+....+.+.+.. ...++|+++||...+.++.+++.+.
T Consensus 51 ~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 45889999999999987789999999999998755444443322 3458999999999999999998765
No 29
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.54 E-value=2.2e-07 Score=99.99 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHhhcC-CeEEEEcCCCChHHHHHHHHHHHHHHh-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQR-PISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~-~l~LIqGPPGTGKT~tla~iI~~L~~~-~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..|++.|++|+..++.. ...+|.+|+|||||.+....+..++.. +..++|+++|+...++++.+++.+.
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 46899999999999986 688999999999999877666555443 4558999999999999999998764
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.54 E-value=3.4e-07 Score=101.48 Aligned_cols=67 Identities=27% Similarity=0.219 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.|.+.|.+++..++.. -.+|.+|+|+|||.++...+..++.....++||++|+...+++..+.+.+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 5789999999999887 789999999999999988887776656679999999999999999999875
No 31
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.53 E-value=4.7e-07 Score=93.07 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHH-HHHHHh------CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQ------GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI-~~L~~~------~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++.|.+|+..++...-.++++|.|||||.+....+ .++... ...++|+++||...+.++.+.+.+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 456899999999999988889999999999998855444 344321 2457999999999999998877653
No 32
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.53 E-value=3.9e-07 Score=95.21 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHH-HHHH-----hCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY-HMAK-----QGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~-~L~~-----~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++-|.+|+..++...-.+|+||.|||||.+....+. .+.+ ....++|+++||...+.++.+++.+.
T Consensus 74 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 74 FTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3468999999999999877789999999999988654444 3443 13458999999999999999998765
No 33
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.50 E-value=3.2e-07 Score=93.61 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHH-HHHHHHHh-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAA-IVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~-iI~~L~~~-~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++.|.+|+..++...-.+|.+|.|||||.+... ++..+... ...++|+++||...++++.+++.+.
T Consensus 44 ~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 44 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3468999999999998877899999999999988543 33333322 3458999999999999999998765
No 34
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.49 E-value=3.2e-07 Score=92.65 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..+++.|.+|+..++...-.+|++|.|||||.+....+.+.+.. ...++|+++||...++++.+++.+.
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 46889999999999988889999999999998765444443322 2458999999999999999988654
No 35
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.49 E-value=5e-07 Score=96.09 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..|++.|++|+..++...-.+|.+|+|+|||.+....+.. . ..++|+++|+...++++.+++.+.
T Consensus 14 ~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---~-~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 14 FKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---L-GMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---H-TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---h-cCCEEEEeCCHHHHHHHHHHHHHH
Confidence 34689999999999998888999999999999876544433 3 459999999999999999999764
No 36
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.46 E-value=3.4e-07 Score=93.96 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh---CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~---~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++.|.+|+..++...-.++++|.|||||.+....+...+.. ...++|+++||...++++.+.+.+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 49 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 346899999999999987779999999999998865444444432 3348999999999999999998765
No 37
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.44 E-value=5e-07 Score=98.99 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..|++.|.+|+..++...-.+|.+|+|||||.+....+...+.. ...++|+++|+...++++.+++.+.
T Consensus 41 ~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 41 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 346899999999999987779999999999998766555544432 3458999999999999999988764
No 38
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.44 E-value=6e-07 Score=97.80 Aligned_cols=69 Identities=26% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..|++.|++|+..++...-.+|.+|.|+|||.+....+.+.+.. ...++|+++|+...++++.+++.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 46899999999999988889999999999998865444443322 3458999999999999999988764
No 39
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.43 E-value=5.4e-07 Score=101.63 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCe-EEEec
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK-VVRLC 465 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~-vvRl~ 465 (779)
..|++.|.+|+..++..+-.+|.||.|+|||.+....+..+ ..++||++|+...+.+..+++.+.+++ +..+.
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~ 165 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 165 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhCCCcceEEEC
Confidence 47999999999999887779999999999999987766554 459999999999999999999886665 54443
No 40
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.43 E-value=9e-07 Score=96.41 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..|.+.|.+|+..++...-.+|.+|+|+|||.+....+...+.. +..++|+++|+...++++.+.+.+.
T Consensus 29 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 46899999999999987889999999999998766555444332 3458999999999999999888764
No 41
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.41 E-value=6.9e-07 Score=98.86 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc---CCeEEEe
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT---GLKVVRL 464 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~---~l~vvRl 464 (779)
.+++.|.+|+..++...-.+|++|.|||||.+....+..+.. .+.++|+++||...+.++.+++.+. ++++..+
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~ 97 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 97 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE
Confidence 467899999999998878999999999999955444444443 4459999999999999999999874 4444443
No 42
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.39 E-value=5.1e-07 Score=105.03 Aligned_cols=69 Identities=28% Similarity=0.304 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHhhc-----CCeEEEEcCCCChHHHHHHHHHHHHHHhC--------CCcEEEEcCcHHHHHHHH-HHH
Q 004009 389 PELNASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYHMAKQG--------QGQVLVCAPSNVAVDQLA-EKI 454 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~-----~~l~LIqGPPGTGKT~tla~iI~~L~~~~--------~~rILV~ApSN~AVD~L~-erL 454 (779)
..|.+.|.+||..++. .+-.+|.+|.|||||.++..++..+++.+ ..+||+++|++.-+++.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4689999999999875 46679999999999999988888887753 468999999999999888 544
Q ss_pred Hhc
Q 004009 455 SAT 457 (779)
Q Consensus 455 ~~~ 457 (779)
...
T Consensus 257 ~~~ 259 (590)
T 3h1t_A 257 TPF 259 (590)
T ss_dssp TTT
T ss_pred Hhc
Confidence 433
No 43
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.38 E-value=1.3e-06 Score=94.96 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++.|.+|+..++.. .-.+|++|.|+|||.+....+...+.. ...++|+++|+...++++.+++.+.
T Consensus 25 ~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 25 FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp CCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 346899999999999886 789999999999999876555544332 3458999999999999999998764
No 44
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.38 E-value=9.3e-07 Score=100.69 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhC----CCcEEEEcCcHHHHHHHHHHHHhc----CCeE
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GLKV 461 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~----~~rILV~ApSN~AVD~L~erL~~~----~l~v 461 (779)
.|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+.+... ..++||++||...+.++.+.+.+. ++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 57899999999999888899999999999999877776666552 568999999999999999888764 5555
Q ss_pred EEec
Q 004009 462 VRLC 465 (779)
Q Consensus 462 vRl~ 465 (779)
..+.
T Consensus 84 ~~~~ 87 (555)
T 3tbk_A 84 ASIS 87 (555)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
No 45
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.37 E-value=1.6e-06 Score=99.07 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhC----CCcEEEEcCcHHHHHHHHHHHHhc----CCe
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GLK 460 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~----~~rILV~ApSN~AVD~L~erL~~~----~l~ 460 (779)
..|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+.+... ..++||++||...+.++.+.+.+. +++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 368899999999999877899999999999998877777666652 568999999999999999888764 455
Q ss_pred EEEe
Q 004009 461 VVRL 464 (779)
Q Consensus 461 vvRl 464 (779)
+..+
T Consensus 86 ~~~~ 89 (556)
T 4a2p_A 86 VQGI 89 (556)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5444
No 46
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.36 E-value=1.6e-06 Score=95.42 Aligned_cols=69 Identities=26% Similarity=0.268 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHH--hCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK--QGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~--~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..+++.|.+|+..++...-.+|++|.|||||.+....+.+.+. ....++|+++||...+.++.+.+.+.
T Consensus 58 ~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 4578999999999998777999999999999887665555443 23468999999999999999988764
No 47
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.34 E-value=2.5e-06 Score=93.82 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHH-HHHHHHHHhCC-------------------CcEEEEcCcHHHHH
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSA-AIVYHMAKQGQ-------------------GQVLVCAPSNVAVD 448 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla-~iI~~L~~~~~-------------------~rILV~ApSN~AVD 448 (779)
..+++.|.+|+..++...-.+|++|.|||||.+.. .++..+...+. .++|+++||...+.
T Consensus 36 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 115 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAV 115 (417)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHH
Confidence 46789999999999888889999999999998654 34444444321 36999999999999
Q ss_pred HHHHHHHhc
Q 004009 449 QLAEKISAT 457 (779)
Q Consensus 449 ~L~erL~~~ 457 (779)
++.+++.+.
T Consensus 116 q~~~~~~~~ 124 (417)
T 2i4i_A 116 QIYEEARKF 124 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 48
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=96.52 Aligned_cols=69 Identities=26% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..+++.|.+|+..++...-.+|.+|.|+|||.+....+.+.+.. ...++|+++|+...++++.+++.+.
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 46889999999999987779999999999999866555544432 3458999999999999999998764
No 49
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.26 E-value=3.3e-06 Score=99.83 Aligned_cols=77 Identities=23% Similarity=0.217 Sum_probs=62.0
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCC----CcEEEEcCcHHHHHHHHHHHHhc----CC
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ----GQVLVCAPSNVAVDQLAEKISAT----GL 459 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~----~rILV~ApSN~AVD~L~erL~~~----~l 459 (779)
...|.+-|.+++..++...-++|.+|.|+|||.+....+.+.+.... .++||++||...+.+..+.+.+. ++
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 90 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGY 90 (696)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCc
Confidence 45789999999999998888999999999999988777776655432 68999999999999999888765 45
Q ss_pred eEEEe
Q 004009 460 KVVRL 464 (779)
Q Consensus 460 ~vvRl 464 (779)
++..+
T Consensus 91 ~v~~~ 95 (696)
T 2ykg_A 91 RVTGI 95 (696)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 55444
No 50
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.25 E-value=3.2e-06 Score=92.51 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++.|.+|+..++.. ...+|.+|.|||||.+....+.+.+.. ...++|+++|+...+.++.+++.+.
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 45 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 456899999999999975 789999999999998865444433332 2348999999999999998888764
No 51
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.22 E-value=2.9e-06 Score=102.38 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhC----CCcEEEEcCcHHHHHHHHHHHHhc----CC
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GL 459 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~----~~rILV~ApSN~AVD~L~erL~~~----~l 459 (779)
...|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+++... ..++||++|+...+.+..+.+.+. ++
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 3578999999999999878899999999999998877777766652 569999999999999998888764 55
Q ss_pred eEEEecc
Q 004009 460 KVVRLCA 466 (779)
Q Consensus 460 ~vvRl~~ 466 (779)
++..+.+
T Consensus 326 ~v~~~~g 332 (797)
T 4a2q_A 326 SVQGISG 332 (797)
T ss_dssp CEEEECC
T ss_pred eEEEEeC
Confidence 5555443
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.22 E-value=2.4e-06 Score=101.70 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHH-hhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHH
Q 004009 388 LPELNASQVFAVKS-VLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~-aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (779)
+..|++.|.+|+.. .+.+...+|.||.|+|||+++...+...+...+.+|++++|+...+.+..+++.
T Consensus 28 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 28 IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH
Confidence 45799999999998 456788999999999999998665555444334699999999999999999984
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.20 E-value=9.3e-07 Score=104.60 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhC-C----CcEEEEcCcHHHHHHH-HHHHHhcC---Ce
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG-Q----GQVLVCAPSNVAVDQL-AEKISATG---LK 460 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~----~rILV~ApSN~AVD~L-~erL~~~~---l~ 460 (779)
.|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+++..+ . .++||++|+...+.+. .+.+.+.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 68899999999999877899999999999999887777665542 2 6899999999999999 88887653 44
Q ss_pred EEEe
Q 004009 461 VVRL 464 (779)
Q Consensus 461 vvRl 464 (779)
+..+
T Consensus 87 v~~~ 90 (699)
T 4gl2_A 87 VIGL 90 (699)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.20 E-value=6e-06 Score=99.17 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHhhcC------CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVLQR------PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~------~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.|++.|.+|+..++.. ...+|+||.|||||.+....+...+..+ .++++++||...+.++.+++.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHH
Confidence 6999999999988752 3679999999999999887777766665 49999999999999999988764
No 55
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.14 E-value=6.4e-06 Score=96.49 Aligned_cols=157 Identities=19% Similarity=0.269 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHhhc--CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccc
Q 004009 390 ELNASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~--~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~~ 467 (779)
.++..|.+|+...+. .+..+|.|++|+|||+++..++.++. .+++|||||..|+..+.+-..+. +
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~~~~----i----- 241 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGEK----F----- 241 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHHGGG----C-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHhhCC----e-----
Confidence 689999999998876 67889999999999988877777663 36899999999999877654321 0
Q ss_pred cccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceecccccCCccc
Q 004009 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRL 547 (779)
Q Consensus 468 sre~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~~~L 547 (779)
+.+.. +. ++.
T Consensus 242 ------------------~~~~P----------------------d~-------------~~~----------------- 251 (671)
T 2zpa_A 242 ------------------RFIAP----------------------DA-------------LLA----------------- 251 (671)
T ss_dssp ------------------CBCCH----------------------HH-------------HHH-----------------
T ss_pred ------------------EEeCc----------------------hh-------------hhh-----------------
Confidence 00000 00 000
Q ss_pred cCCCCCEEEEEcCCCCChhhhhhhhhcCCCeEEEEeCCCCCCceeechHHHHhccchhHHHHHHHCCCccEEeccccCC-
Q 004009 548 ANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM- 626 (779)
Q Consensus 548 ~~~~Fd~VIIDEAsQatEpe~LipL~~~~~~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRLi~~g~~~~~L~~QYRm- 626 (779)
.....|+||||||+.+..|- |..+.....+++|+..-.+...+= .||...+...| .....+.|+.-.|-
T Consensus 252 ~~~~~dlliVDEAAaIp~pl-l~~ll~~~~~v~~~tTv~GYEGtG-------rgf~lk~~~~L--~~~~~~~L~~piR~a 321 (671)
T 2zpa_A 252 SDEQADWLVVDEAAAIPAPL-LHQLVSRFPRTLLTTTVQGYEGTG-------RGFLLKFCARF--PHLHRFELQQPIRWA 321 (671)
T ss_dssp SCCCCSEEEEETGGGSCHHH-HHHHHTTSSEEEEEEEBSSTTBBC-------HHHHHHHHHTS--TTCEEEECCSCSSSC
T ss_pred CcccCCEEEEEchhcCCHHH-HHHHHhhCCeEEEEecCCcCCCcC-------cccccccHhhc--CCCcEEEccCceecC
Confidence 01258999999999999886 333433457899999988844432 23333333333 34567889998886
Q ss_pred -chHHHHHHHhhhc
Q 004009 627 -HPSLSEFPSNSFY 639 (779)
Q Consensus 627 -hp~I~~f~S~~FY 639 (779)
+-.|-.|.++.+-
T Consensus 322 ~~DplE~wl~~~ll 335 (671)
T 2zpa_A 322 QGCPLEKMVSEALV 335 (671)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhhC
Confidence 5689999888773
No 56
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.14 E-value=1.3e-05 Score=89.81 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHH-HHHHHHHHhC------CCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSA-AIVYHMAKQG------QGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla-~iI~~L~~~~------~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..+++-|++|+..++...-.++++|.|||||.+.. -++.++...+ ..++||++||...+.++.+.+.+.
T Consensus 77 ~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 45789999999999988889999999999998754 3445555542 348999999999999999988765
No 57
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.13 E-value=9.4e-06 Score=101.13 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCe
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK 460 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~ 460 (779)
..|++.|.+|+..++...-.+|.||.|+|||.+....+...+..+ .++|+++|+...+.++.+++.+...+
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-~rvlvl~PtraLa~Q~~~~l~~~~~~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAEFGD 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHHHHHHHHHhCC
Confidence 368999999999998888899999999999998877777666655 49999999999999999999875433
No 58
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.13 E-value=7.3e-06 Score=87.45 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEcCCCChHHHHHH-HHHHHHHHh-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSA-AIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla-~iI~~L~~~-~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++-|.+|+..++.. .-.++++|.|||||.+.. .++.++... ...++||++||..-+.++.+.+...
T Consensus 112 ~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 346889999999999875 678999999999998754 333333322 2237999999999999998887664
No 59
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.11 E-value=3.1e-06 Score=100.62 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHH
Q 004009 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (779)
+..|++.|.+++..++.....+|.||.|+|||+++...+...+..+ .++++++|+...+.+..+++.
T Consensus 23 ~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 23 IEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG-GKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp --CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CcEEEEeCcHHHHHHHHHHHH
Confidence 3468889999999988888999999999999998865555544444 599999999999999999984
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.11 E-value=5e-06 Score=102.12 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhC----CCcEEEEcCcHHHHHHHHHHHHhc----CCe
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GLK 460 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~----~~rILV~ApSN~AVD~L~erL~~~----~l~ 460 (779)
..|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+++... ..++||++|+...+.++.+.+.+. +++
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 468899999999999888899999999999998777776655542 568999999999999998888764 566
Q ss_pred EEEecc
Q 004009 461 VVRLCA 466 (779)
Q Consensus 461 vvRl~~ 466 (779)
+..+.+
T Consensus 327 v~~~~G 332 (936)
T 4a2w_A 327 VQGISG 332 (936)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 655543
No 61
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.08 E-value=3.1e-06 Score=100.89 Aligned_cols=68 Identities=22% Similarity=0.354 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHH-hhcCCeEEEEcCCCChHHHHHHHHH-HHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 388 LPELNASQVFAVKS-VLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~-aL~~~l~LIqGPPGTGKT~tla~iI-~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
+..|++.|.+|+.. .+.....+|.||.|+|||++....+ ..+...+ .++++++|+...+.++.+++..
T Consensus 21 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 21 IESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG-GKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp CCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC-SEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC-CEEEEEcCcHHHHHHHHHHHHH
Confidence 35689999999998 5667889999999999999875444 4444444 5999999999999999999853
No 62
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.07 E-value=1.3e-05 Score=92.47 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHhh--cCCeEEEEcCCCChHHHHHHHHHHH-HHHhC-----CCcEEEEcCcHHHHHHHHHHHHh
Q 004009 388 LPELNASQVFAVKSVL--QRPISLIQGPPGTGKTVTSAAIVYH-MAKQG-----QGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL--~~~l~LIqGPPGTGKT~tla~iI~~-L~~~~-----~~rILV~ApSN~AVD~L~erL~~ 456 (779)
+..|++-|.+|+..++ ...-++|.+|.|||||.+....+.+ +.+.. ..++||++||...+.++.+.+.+
T Consensus 92 ~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp CSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 4568999999999998 4567899999999999876554444 43332 23899999999999999998876
No 63
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.03 E-value=9.3e-06 Score=91.71 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..+++-|.+|+..++.. ..++++||.|||||.+....+.+.+.. ...++||++|+...+.++.+++.+.
T Consensus 112 ~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 185 (479)
T 3fmp_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (479)
T ss_dssp CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHH
Confidence 346788999999999875 789999999999998855444333322 2238999999999999998877653
No 64
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.03 E-value=1.7e-05 Score=92.01 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHhh--cCCeEEEEcCCCChHHHHHHHHHHHHH-HhC-----CCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVL--QRPISLIQGPPGTGKTVTSAAIVYHMA-KQG-----QGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL--~~~l~LIqGPPGTGKT~tla~iI~~L~-~~~-----~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+..|++-|.+|+..++ ...-.+|++|.|||||.+....+.+.+ ... ..++||++||...+.++.+.+.+.
T Consensus 41 ~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~ 118 (579)
T 3sqw_A 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 118 (579)
T ss_dssp CSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHH
Confidence 3568999999999998 456789999999999987655444443 332 248999999999999999988763
No 65
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.01 E-value=2.4e-06 Score=97.70 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
...+++.|.+|+..++.. .-.+|.+|.|||||.+....+.+.+.. ...++|+++|++..++++.+++.+.
T Consensus 139 ~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 139 XXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 345788999999999986 789999999999999866555544433 2448999999999999999998775
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.01 E-value=1.3e-05 Score=99.91 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.+++-|.+|+..++...-.+|++|.|||||.+....+.+++.. +.++||++||...+.++.+++.+.
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-GKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-TCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCeEEEEechHHHHHHHHHHHHHh
Confidence 4789999999999988889999999999999665555555544 459999999999999999999884
No 67
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.2e-05 Score=99.17 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.|++.|.+|+..++...-.+|.+|.|+|||.+....+...+..+ .++|+++|+...+.+..+++.+.
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-CeEEEECChHHHHHHHHHHHHHH
Confidence 59999999999998888899999999999998766666666554 59999999999999999998765
No 68
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.90 E-value=4.3e-05 Score=94.29 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.|++.|.+||..++...-.+|.||.|+|||.+....+..+...+ .++||++|+...+.++.+++.+.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-TKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHH
Confidence 58999999999999888999999999999998776666666554 59999999999999999999875
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.88 E-value=2.9e-05 Score=95.70 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHhhcC--CeEEEEcCCCChHHHHHHHHHHHHHHhC-CCcEEEEcCcHHHHHHHHHHHHh-cCCeEEEe
Q 004009 389 PELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNVAVDQLAEKISA-TGLKVVRL 464 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~~-~~rILV~ApSN~AVD~L~erL~~-~~l~vvRl 464 (779)
..|.+.|.+|+..++.. +-.||.++.|+|||.++..++..++..+ .+++||++|+ ..+.+....+.+ .++++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 47899999999998873 4689999999999999999988887764 3589999999 777888877743 34443322
Q ss_pred ccccccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceecccccCC
Q 004009 465 CAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGD 544 (779)
Q Consensus 465 ~~~sre~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~~a~~ 544 (779)
..... ... ... ....+...+||++|......
T Consensus 231 ~~~~~--------------------------~~~---~~~--------------------~~~~~~~~dIvI~T~~~L~~ 261 (968)
T 3dmq_A 231 DDERY--------------------------AEA---QHD--------------------AYNPFDTEQLVICSLDFARR 261 (968)
T ss_dssp CHHHH--------------------------HHH---HHT--------------------TCSSSTTCSEEEECHHHHHT
T ss_pred ccchh--------------------------hhh---hhh--------------------cccccccCCEEEEcHHHHhh
Confidence 11000 000 000 00123457888888655422
Q ss_pred -----ccccCCCCCEEEEEcCCCCChhh--------hhhhhhc-CCCeEEEEeCCCC
Q 004009 545 -----PRLANFRFRQVLIDESTQATEPE--------CLIPLVL-GAKQVVLVGDHCQ 587 (779)
Q Consensus 545 -----~~L~~~~Fd~VIIDEAsQatEpe--------~LipL~~-~~~~lILVGD~~Q 587 (779)
..+....|++||||||..+.-.. .+..+.. ....+.|-|=|.|
T Consensus 262 ~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 262 SKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQ 318 (968)
T ss_dssp STTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSS
T ss_pred CHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCcc
Confidence 12445689999999999885322 2333332 2356788888876
No 70
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.85 E-value=9.6e-05 Score=92.53 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHhhc----CC--eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVLQ----RP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~----~~--l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.+++.|.+|+..++. .. -.+|+||.|+|||.+....+..++..+ .++||++||...+.+..+++.+.
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-CeEEEEechHHHHHHHHHHHHHH
Confidence 469999999999885 22 689999999999998776665555544 59999999999999999988753
No 71
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.80 E-value=6.1e-05 Score=86.52 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEec
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLC 465 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~ 465 (779)
..|.+-|.+|+..++...-.+|.+|.|+|||.+.. +..+. . .+++||++|+..-+.+..+++.+.++++..+.
T Consensus 24 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~l~-~-~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~ 96 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ--IPALL-L-NGLTVVVSPLISLMKDQVDQLQANGVAAACLN 96 (523)
T ss_dssp SSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHH--HHHHH-S-SSEEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHH--HHHHH-h-CCCEEEECChHHHHHHHHHHHHHcCCcEEEEe
Confidence 35678899999999988889999999999997433 22222 2 35899999999999999999998877765553
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.78 E-value=4.8e-05 Score=86.22 Aligned_cols=141 Identities=18% Similarity=0.231 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHhh----cCCeEEEEcCCCChHHHHHHHHHHHHHHhC-CCcEEEEcCcHHHHHHHHHHHHhcC--CeE
Q 004009 389 PELNASQVFAVKSVL----QRPISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNVAVDQLAEKISATG--LKV 461 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL----~~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~~rILV~ApSN~AVD~L~erL~~~~--l~v 461 (779)
..|.+.|++||..++ ...-.+|..+.|+|||.++..++..+...+ ..++||++|+. .+++..+.+.+.. .++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHCCCceE
Confidence 468999999997764 234577889999999999988888877653 46899999965 6788888877642 222
Q ss_pred EEeccccccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceecccc
Q 004009 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVG 541 (779)
Q Consensus 462 vRl~~~sre~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~~ 541 (779)
..+..... +..+..++|+++|...
T Consensus 115 ~~~~g~~~--------------------------------------------------------~~~~~~~~ivi~t~~~ 138 (500)
T 1z63_A 115 AVFHEDRS--------------------------------------------------------KIKLEDYDIILTTYAV 138 (500)
T ss_dssp EECSSSTT--------------------------------------------------------SCCGGGSSEEEEEHHH
T ss_pred EEEecCch--------------------------------------------------------hccccCCcEEEeeHHH
Confidence 22211000 0013456788887665
Q ss_pred cCCc-cccCCCCCEEEEEcCCCCChhh-----hhhhhhcCCCeEEEEeCCCC
Q 004009 542 AGDP-RLANFRFRQVLIDESTQATEPE-----CLIPLVLGAKQVVLVGDHCQ 587 (779)
Q Consensus 542 a~~~-~L~~~~Fd~VIIDEAsQatEpe-----~LipL~~~~~~lILVGD~~Q 587 (779)
.... .+....|++||||||..+..+. .+..+ ....++.|-|=|-|
T Consensus 139 l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 139 LLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-KSKYRIALTGTPIE 189 (500)
T ss_dssp HTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-CEEEEEEECSSCST
T ss_pred HhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh-ccCcEEEEecCCCC
Confidence 4432 3556789999999998875443 12222 22356788888766
No 73
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.71 E-value=6.1e-05 Score=93.58 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 391 LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+ +-|.+|+..++...-.+|+||.|||||....-++..+... +.++||++||...+.++.+++.+.
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~-~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-CCeEEEEeccHHHHHHHHHHHHHH
Confidence 6 8999999999988889999999999997544555444443 459999999999999999998764
No 74
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=97.70 E-value=0.00018 Score=70.89 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhhc--CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI 454 (779)
Q Consensus 392 N~sQ~~AV~~aL~--~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL 454 (779)
+..|..|+...+. +++.+|+|+-||+||....+-+..+.+..+.+|.++||+..+...+.+.+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~ 100 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDE 100 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhc
Confidence 4689999998875 67999999999999999655555666666679999999999999887764
No 75
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.68 E-value=5.9e-05 Score=88.01 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEecc
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCA 466 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~ 466 (779)
..+.+-|.+||..++...-++|.+|.|+|||.+....+ +. ..+++||++|+...+.+..+++.+.++++..+.+
T Consensus 43 ~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpa--l~--~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~ 116 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPA--LC--SDGFTLVICPLISLMEDQLMVLKQLGISATMLNA 116 (591)
T ss_dssp CSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHH--HT--SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHH--HH--cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 45778899999999988789999999999997543222 22 2459999999999999999999988777655543
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.66 E-value=4.9e-05 Score=87.67 Aligned_cols=73 Identities=27% Similarity=0.315 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHh---h-cCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEecc
Q 004009 391 LNASQVFAVKSV---L-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCA 466 (779)
Q Consensus 391 LN~sQ~~AV~~a---L-~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~ 466 (779)
+-+.|.+++..+ + .....+|++|.|||||.+. ++..+. . ..+|++++||+.-++++.+.+...++++..+.+
T Consensus 8 ~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~--l~~~~~-~-~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~g 83 (540)
T 2vl7_A 8 LRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFV--EVLGMQ-L-KKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIG 83 (540)
T ss_dssp -CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHH--HHHHHH-H-TCEEEEEESCHHHHHHHHHHHGGGTCCEEEC--
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHH--HHHHHh-C-CCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecC
Confidence 456788865543 3 3568899999999999643 333232 2 359999999999999999999887777766655
Q ss_pred c
Q 004009 467 K 467 (779)
Q Consensus 467 ~ 467 (779)
+
T Consensus 84 r 84 (540)
T 2vl7_A 84 K 84 (540)
T ss_dssp -
T ss_pred C
Confidence 4
No 77
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.66 E-value=0.00011 Score=95.09 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHhhc-CCeEEEEcCCCChHHHHHHHHHH-HHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 388 LPELNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVY-HMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~-~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
++.+|+-|.+|+..++. +...+|.+|.|+|||.+..-.+. .+.+.++.++++++|+...+.+..+.+.+
T Consensus 924 f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHH
Confidence 56799999999999886 56799999999999998754444 45555567999999999999998887754
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.64 E-value=6.8e-05 Score=86.66 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCHHHHHHHHH---hh-cCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc----CCeEE
Q 004009 391 LNASQVFAVKS---VL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT----GLKVV 462 (779)
Q Consensus 391 LN~sQ~~AV~~---aL-~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~----~l~vv 462 (779)
+-+.|.+++.. ++ .....+|++|.|||||.....-+ +. . ..+|++++||+.-++++.+.+... +++++
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~--l~-~-~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVS--LE-V-KPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHH--HH-H-CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHH--Hh-C-CCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 45788885554 33 35688999999999976543322 22 3 459999999999999999877665 45555
Q ss_pred Eecc
Q 004009 463 RLCA 466 (779)
Q Consensus 463 Rl~~ 466 (779)
-+.+
T Consensus 80 ~l~g 83 (551)
T 3crv_A 80 FLVG 83 (551)
T ss_dssp ECCC
T ss_pred EEcc
Confidence 5544
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.49 E-value=0.00045 Score=81.37 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHhhc---------CCeEEEEcCCCChHHHHHHHHHHHHHHhC------CCcEEEEcCcHHHHHHHHHHH
Q 004009 390 ELNASQVFAVKSVLQ---------RPISLIQGPPGTGKTVTSAAIVYHMAKQG------QGQVLVCAPSNVAVDQLAEKI 454 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~---------~~l~LIqGPPGTGKT~tla~iI~~L~~~~------~~rILV~ApSN~AVD~L~erL 454 (779)
.|-+.|+++|..++. ..-.++.-+.|+|||.+++.++..+++.+ ..++||++|+ ..+.+..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 578999999998752 23468888999999999999998888763 2469999997 5677777776
Q ss_pred Hhc---CCeEEEeccccccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhc
Q 004009 455 SAT---GLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQS 531 (779)
Q Consensus 455 ~~~---~l~vvRl~~~sre~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~ 531 (779)
.+. .+.++.+.+..+. .....+....... .....
T Consensus 134 ~~~~~~~~~~~~~~~g~~~-----------------------~~~~~~~~~~~~~--------------------~~~~~ 170 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKD-----------------------EIDSKLVNFISQQ--------------------GMRIP 170 (644)
T ss_dssp HHHHGGGCCEEEECSSCHH-----------------------HHHHHHHHHHCCC--------------------SSCCS
T ss_pred HHHcCCCeeEEEEeCCCHH-----------------------HHHHHHHHHHHhc--------------------CCCCC
Confidence 653 1333333221110 0000000000000 00123
Q ss_pred cccceecccccC--CccccCCCCCEEEEEcCCCCChhh--hhhhh--hcCCCeEEEEeCCCC
Q 004009 532 ADVICCTCVGAG--DPRLANFRFRQVLIDESTQATEPE--CLIPL--VLGAKQVVLVGDHCQ 587 (779)
Q Consensus 532 a~VI~~T~~~a~--~~~L~~~~Fd~VIIDEAsQatEpe--~LipL--~~~~~~lILVGD~~Q 587 (779)
.+|+++|..... ...+....|++||||||..+.-+. ....+ .....+++|-|=|-|
T Consensus 171 ~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiq 232 (644)
T 1z3i_X 171 TPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232 (644)
T ss_dssp CCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSG
T ss_pred CcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCccc
Confidence 567777754432 123556689999999999875433 22222 134568889998877
No 80
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.42 E-value=0.00027 Score=72.14 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh-C---CCcEEEEcCcHHHHHHHHHHHHh
Q 004009 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-G---QGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 391 LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~-~---~~rILV~ApSN~AVD~L~erL~~ 456 (779)
+.+.|.+++..+......+|.||.|||||+.+...+...... + ..++++.+|+...+.++.+++..
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 566899999999889999999999999999877665543333 2 23899999999999999998865
No 81
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.41 E-value=0.00015 Score=89.47 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHhhc--------------CCeEEEEcCCCChHHHHHHHHHHHHHHh-C-CCcEEEEcCcHHHHHHHHHH
Q 004009 390 ELNASQVFAVKSVLQ--------------RPISLIQGPPGTGKTVTSAAIVYHMAKQ-G-QGQVLVCAPSNVAVDQLAEK 453 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~--------------~~l~LIqGPPGTGKT~tla~iI~~L~~~-~-~~rILV~ApSN~AVD~L~er 453 (779)
.+.+.|..||..++. ..-.+|+.+.|||||.++..++ +++.. + ..+|||++|++.-++++.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 478899999998875 1357999999999999987666 44433 2 35899999999999999888
Q ss_pred HHhc
Q 004009 454 ISAT 457 (779)
Q Consensus 454 L~~~ 457 (779)
+...
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
No 82
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.34 E-value=0.00044 Score=89.58 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=55.7
Q ss_pred CCCCCCHHHHHHHHHhhc-CCeEEEEcCCCChHHHHHHHHHHH-HHHh---------CCCcEEEEcCcHHHHHHHHHHHH
Q 004009 387 GLPELNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYH-MAKQ---------GQGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 387 ~~~~LN~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~~-L~~~---------~~~rILV~ApSN~AVD~L~erL~ 455 (779)
++..||+-|.+++..++. +...||.+|.|+|||.++.-.+.+ |.+. .+.++++++|+.+-+.+..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 467899999999999986 568999999999999987544444 4332 24589999999999988887765
Q ss_pred h
Q 004009 456 A 456 (779)
Q Consensus 456 ~ 456 (779)
+
T Consensus 156 ~ 156 (1724)
T 4f92_B 156 K 156 (1724)
T ss_dssp H
T ss_pred H
Confidence 4
No 83
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00033 Score=84.54 Aligned_cols=159 Identities=14% Similarity=0.211 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHhh----cCCeEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHHHHHhc--CCe
Q 004009 389 PELNASQVFAVKSVL----QRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT--GLK 460 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL----~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~--~l~ 460 (779)
..|-+.|.++|..++ ...-.+|.-+.|+|||.+++.++..+... ..+++||++| ...+.+..+.+.+. +++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 468899999998765 35668899999999999998888777543 4568999999 45577888777664 344
Q ss_pred EEEeccccccccCCccchhhHHHHHhhccchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHHHHhhccccceeccc
Q 004009 461 VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCV 540 (779)
Q Consensus 461 vvRl~~~sre~i~~~~~~l~l~~~v~~~~~~~~~~l~kl~~lk~~~~els~~d~k~~~~l~~~~~~~iL~~a~VI~~T~~ 540 (779)
++.+...... ...+..+..... .. ........++|+++|..
T Consensus 314 v~~~~g~~~~----------------------r~~~~~~~~~~~-------~~----------~~~~~~~~~dvvitTy~ 354 (800)
T 3mwy_W 314 CICYMGNQKS----------------------RDTIREYEFYTN-------PR----------AKGKKTMKFNVLLTTYE 354 (800)
T ss_dssp EEECCCSSHH----------------------HHHHHHHHSCSC-------C---------------CCCCCSEEEECTT
T ss_pred EEEEeCCHHH----------------------HHHHHHHHhhcc-------cc----------ccccccccCCEEEecHH
Confidence 4433322110 000000000000 00 00112346788888866
Q ss_pred ccCC--ccccCCCCCEEEEEcCCCCChhh--hhhhhh--cCCCeEEEEeCCCC
Q 004009 541 GAGD--PRLANFRFRQVLIDESTQATEPE--CLIPLV--LGAKQVVLVGDHCQ 587 (779)
Q Consensus 541 ~a~~--~~L~~~~Fd~VIIDEAsQatEpe--~LipL~--~~~~~lILVGD~~Q 587 (779)
.... ..+....|++||||||..+.-+. ....+. ....+++|-|=|-|
T Consensus 355 ~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 355 YILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 407 (800)
T ss_dssp HHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCS
T ss_pred HHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCC
Confidence 5433 23556689999999998874332 112221 23457888898876
No 84
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.25 E-value=0.00047 Score=81.54 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=44.7
Q ss_pred HhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEe
Q 004009 401 SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRL 464 (779)
Q Consensus 401 ~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl 464 (779)
.++.+...++.||+|||||+.+ +..+... .+.++++|+..++.++.+++.+.++++.-+
T Consensus 151 r~l~rk~vlv~apTGSGKT~~a---l~~l~~~--~~gl~l~PtR~LA~Qi~~~l~~~g~~v~ll 209 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHA---IQKYFSA--KSGVYCGPLKLLAHEIFEKSNAAGVPCDLV 209 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHH---HHHHHHS--SSEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhcCCCEEEEEcCCCCCHHHHH---HHHHHhc--CCeEEEeCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3455678999999999999933 2333333 356999999999999999998887765544
No 85
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.22 E-value=0.00032 Score=79.12 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=42.4
Q ss_pred cCCeEEEEcCCCChHHHH-HHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHH
Q 004009 404 QRPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 404 ~~~l~LIqGPPGTGKT~t-la~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (779)
.+..++|.||.|||||.+ +..++..+...+ .++||++||...+.++.+++.
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~-~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQR-LRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHTT-CCEEEEECSHHHHHHHHHHTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEECchHHHHHHHHHHhc
Confidence 367899999999999998 456665665544 599999999999999999986
No 86
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.19 E-value=0.00049 Score=81.41 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=43.7
Q ss_pred cCCeEEEEcCCCChHHHHH-HHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004009 404 QRPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (779)
Q Consensus 404 ~~~l~LIqGPPGTGKT~tl-a~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (779)
.....+|+||.|||||.+. ..++..+... ..++||++||...+.++.+++...+
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~-~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQK-RLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEccHHHHHHHHHHHHhcCC
Confidence 5678999999999999985 4555555544 4599999999999999999987654
No 87
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.13 E-value=0.0031 Score=70.54 Aligned_cols=53 Identities=32% Similarity=0.466 Sum_probs=35.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEE-EcCc--HHHHHHHHHHHHhcCCe
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV-CAPS--NVAVDQLAEKISATGLK 460 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV-~ApS--N~AVD~L~erL~~~~l~ 460 (779)
+.++.||||+|||||++.++..+...+. +|++ .+.+ ..|++++...-...++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 6788999999999999999988877665 6655 4443 34455544333333433
No 88
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.09 E-value=0.0034 Score=70.42 Aligned_cols=54 Identities=31% Similarity=0.373 Sum_probs=37.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE-cCc--HHHHHHHHHHHHhcCCeE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APS--NVAVDQLAEKISATGLKV 461 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~-ApS--N~AVD~L~erL~~~~l~v 461 (779)
+.+|.||||+|||||++.++.++.+.+. +|+++ +.+ ..|++++...-...++.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~-kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGY-KVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCC-eEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 6789999999999999999988877665 66554 443 345555554433344443
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.09 E-value=0.00086 Score=65.16 Aligned_cols=48 Identities=23% Similarity=0.163 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhhc---------CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEE
Q 004009 392 NASQVFAVKSVLQ---------RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (779)
Q Consensus 392 N~sQ~~AV~~aL~---------~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (779)
++.|++|+..+.. ....+|.||||||||+++..++..+....+.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 6789888887641 35789999999999999888877766333334444
No 90
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.07 E-value=0.0019 Score=65.45 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=31.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCc
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (779)
.+.++.||.|+|||+.+..++..+...+. +||+..|.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~-kVli~k~~ 65 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQ-HAIVFKPC 65 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEec
Confidence 47889999999999999999988877765 89998775
No 91
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.04 E-value=0.00063 Score=76.52 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=44.8
Q ss_pred HHHhhc-CCeEEEEcCCCChHHHH-HHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHH
Q 004009 399 VKSVLQ-RPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 399 V~~aL~-~~l~LIqGPPGTGKT~t-la~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (779)
+..++. ++..+|+||.|||||.. +..++.++...+ .++|+++||...++++.+.+.
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR-LRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC-CcEEEECCCHHHHHHHHHHhc
Confidence 444554 56779999999999995 666666666654 599999999999999999885
No 92
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.01 E-value=0.001 Score=74.37 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCChHHHHH-HHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tl-a~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (779)
....+|+||.|||||.+. ..++..++..+ .++|+++||...++++.+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g-~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR-LRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEECcHHHHHHHHHHHhC
Confidence 356899999999999986 44554555554 599999999999999998875
No 93
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.88 E-value=0.0005 Score=80.61 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=46.3
Q ss_pred HHHhhcCCeEEEEcCCCChHHHHH-HHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 399 VKSVLQRPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 399 V~~aL~~~l~LIqGPPGTGKT~tl-a~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
+..++.....++++|.|||||.+. ..++..+... ..++||++||...++++.+.+..
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-RLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEcChHHHHHHHHHHhcC
Confidence 555556788999999999999984 5666666654 45999999999999999998863
No 94
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.88 E-value=0.00045 Score=81.28 Aligned_cols=50 Identities=30% Similarity=0.399 Sum_probs=39.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 404 ~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.+...+++||.|||||...... +++.+ .++||++||...+.++.+++.+.
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~---ll~~g-~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAA---YAAQG-YKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH---HHHTT-CCEEEEESCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHHHH---HHHCC-CeEEEEcchHHHHHHHHHHHHHH
Confidence 3567899999999999655432 33343 49999999999999999988653
No 95
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.77 E-value=0.0023 Score=63.97 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (779)
..+.+|.||.|+|||+-+...+......+ .+|++..|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEccc
Confidence 35899999999999999999998887765 589888764
No 96
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.65 E-value=0.022 Score=56.92 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=42.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHH----HHHHHHHHHHhcCCeEEEec
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV----AVDQLAEKISATGLKVVRLC 465 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~----AVD~L~erL~~~~l~vvRl~ 465 (779)
+++.+|.+++|+|||+.+..++...+..+. ||+++-+-.. .=.+++++| ++.+.+.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g 88 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQFIKGTWPNGERNLLEPH---GVEFQVMA 88 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEESSCCSSCCHHHHHHGGG---TCEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCccHHHHHHhC---CcEEEEcc
Confidence 689999999999999999999998888875 9999966442 122344444 35666555
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.43 E-value=0.0042 Score=61.25 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=25.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
...+|.||||||||+++..+...+...+ .+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~-~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN-VSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT-CCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 5789999999999998887777665544 355544
No 98
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.34 E-value=0.0089 Score=59.71 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 391 LNASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 391 LN~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
.|....+.+..... ....+|.||||||||+++..++..+...+ .+++.+
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~-~~~~~~ 86 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE-RRSFYI 86 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 45666666666654 46789999999999999888877665543 244443
No 99
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0032 Score=67.72 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
.+..+|.||||||||+++..++..|...
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999999888887653
No 100
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.17 E-value=0.024 Score=67.92 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
...+-|..++-.++... +.+.+.|||||.+.+--++.- ...+..++|+|||..-+.+..+-+..
T Consensus 83 ~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~-aL~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLN-ALTGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHH-HTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 46789999998888766 889999999998765444321 12345899999999988877766543
No 101
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.13 E-value=0.011 Score=60.47 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (779)
..+.++.||.|+|||+.+..++......+ .+|++..|.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g-~kvli~kp~ 56 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYA 56 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTT-CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCC-CeEEEEeec
Confidence 35789999999999999998888776655 489888764
No 102
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.13 E-value=0.0071 Score=72.68 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhc-CCeEEEEcCCCChHHHHHHHHHHHHHH-hC-CCcEEEEcCcHHHHHHHHHHHHh
Q 004009 393 ASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAK-QG-QGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 393 ~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~~L~~-~~-~~rILV~ApSN~AVD~L~erL~~ 456 (779)
..|++++..++. +..++|.||.|+|||+.+..++..... .+ +.+|++++|+..++.++.+++.+
T Consensus 96 ~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 96 HAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 468888888776 568999999999999965555332211 11 34699999999999999998854
No 103
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.08 E-value=0.006 Score=58.27 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
+.+.+.+...+. ....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 455666666554 356899999999999998887776654
No 104
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0079 Score=60.69 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (779)
..+++|.||||+|||+.+..++..++..+ .++++.+.... .+++.+++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-~~v~~~~~e~~-~~~~~~~~~~~g 74 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMG-EPGIYVALEEH-PVQVRQNMAQFG 74 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEEccCC-HHHHHHHHHHcC
Confidence 45899999999999999999988887765 47777765443 467777776544
No 105
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.02 E-value=0.02 Score=57.96 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=30.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (779)
.+.+|.||-|+|||+.+...+..+...+ .++++..|.-
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g-~kvli~kp~~ 66 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAK-QKVVVFKPAI 66 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CceEEEEecc
Confidence 5789999999999998888887776665 4899987743
No 106
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.94 E-value=0.02 Score=68.40 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
...+-|..++-.++... +.+.+.|||||.+.+--++.... .+.+++|+|||..-+.+..+-+..
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 35689999998777655 88999999999876544432222 345899999999988877766644
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.91 E-value=0.007 Score=59.62 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (779)
..+.+|.||||+|||+.+..++..+...+. +++++.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~-~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKK-KVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC-EEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeec
Confidence 357899999999999999998888776654 88888766
No 108
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.85 E-value=0.0091 Score=60.29 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=40.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (779)
..+++|.|+||+|||+.+..++++.+..+..++++++.... .+++.+++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHcC
Confidence 45899999999999999999888766554558888876543 566777776543
No 109
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=95.85 E-value=0.013 Score=70.34 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
...+-|..++-.++... +.+.+.|+|||.+.+--++.-... +.+++|+|||..-+.+..+-+..
T Consensus 111 rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-GNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-TSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHHH
Confidence 45788999998777554 899999999998765444322222 35899999999988777766543
No 110
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.83 E-value=0.015 Score=69.90 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
...+-|..++-.++... +.+...|||||.+.+--++..... +.+++|+|||..-+.+..+-+..
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-GKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-CSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 45789999998887766 889999999998765444322223 45899999999988887766644
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.81 E-value=0.018 Score=61.23 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=27.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
...+|.||||||||+++..+...+... ..+++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~ 72 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSS 72 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 468999999999999888877776655 34666654
No 112
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.79 E-value=0.0054 Score=68.70 Aligned_cols=54 Identities=24% Similarity=0.360 Sum_probs=43.1
Q ss_pred cCCeEEEEcCCCChHHHHHH-HHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004009 404 QRPISLIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (779)
Q Consensus 404 ~~~l~LIqGPPGTGKT~tla-~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (779)
.....+|+||.|||||.+.. .++..+... +.++|+++||...+.++.+.+...+
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-~~~~lil~Ptr~La~Q~~~~l~~~~ 61 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARR-RLRTLVLAPTRVVLSEMKEAFHGLD 61 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-CCeEEEEcchHHHHHHHHHHHhcCC
Confidence 45678999999999999853 444445444 4599999999999999999987554
No 113
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.78 E-value=0.0075 Score=57.60 Aligned_cols=39 Identities=18% Similarity=0.423 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
+.+.+.+...+. ....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345555555543 356799999999999998888776654
No 114
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.73 E-value=0.018 Score=67.33 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=52.5
Q ss_pred CHHHHHHHHH---hh-cCCeEEEEcCCCChHHHHHH-HHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc----CCeEE
Q 004009 392 NASQVFAVKS---VL-QRPISLIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT----GLKVV 462 (779)
Q Consensus 392 N~sQ~~AV~~---aL-~~~l~LIqGPPGTGKT~tla-~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~----~l~vv 462 (779)
-+.|++.+.. ++ .....++++|.|||||.... -++..+...+ .+|+++++|+.-+.++.+-+... .++++
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~-~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~ 83 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK-LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAI 83 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC-CeEEEECCCHHHHHHHHHHHHHHhhccCeEEE
Confidence 3578776654 33 36789999999999997654 3344444444 59999999999999998776543 45555
Q ss_pred Eeccc
Q 004009 463 RLCAK 467 (779)
Q Consensus 463 Rl~~~ 467 (779)
-+.++
T Consensus 84 ~l~gr 88 (620)
T 4a15_A 84 PMQGR 88 (620)
T ss_dssp ECCCH
T ss_pred EEECC
Confidence 55543
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.71 E-value=0.01 Score=58.06 Aligned_cols=39 Identities=36% Similarity=0.603 Sum_probs=28.8
Q ss_pred CHHHHHHHHHhhcC---CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 392 N~sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.+...+.+...+.. +..+|.||||||||+++..+...+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 34566666666642 3589999999999998877776654
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.57 E-value=0.011 Score=56.24 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
...|.++..++... .....+|.||+|+|||+++..+...+..
T Consensus 21 ~g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 21 GTENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SCCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35777777777665 5668899999999999998877766543
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.46 E-value=0.012 Score=61.24 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=18.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
...||.||||||||+++..+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999998766644
No 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.43 E-value=0.03 Score=59.77 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=37.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc-C--cHHHHHHHHHHHHhcCCeE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA-P--SNVAVDQLAEKISATGLKV 461 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A-p--SN~AVD~L~erL~~~~l~v 461 (779)
+.+|.||+|+||||++..++..+...+ ++|++.+ . ...+++++...+...++.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g-~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEG-KSVVLAAADTFRAAAIEQLKIWGERVGATV 162 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcC-CEEEEEccccccHHHHHHHHHHHHHcCCcE
Confidence 678999999999999999998877665 4776654 2 3345566554444444444
No 119
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0076 Score=67.36 Aligned_cols=22 Identities=45% Similarity=0.751 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (779)
.|+.||||||||.++.+++..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999887776543
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.42 E-value=0.016 Score=62.38 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhhc-------CCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 392 NASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 392 N~sQ~~AV~~aL~-------~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
.+.+.+.+...+. ....+|.||||||||+++..+...+...
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4567777776651 3578999999999999988887766543
No 121
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.40 E-value=0.013 Score=59.79 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
..+.+|.||||+||||.+..++..+...+. +|++..|
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~-kVli~~~ 48 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV-KYLVFKP 48 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEEe
Confidence 357899999999999999999988877664 8888865
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.39 E-value=0.022 Score=56.66 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=37.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..+++|.||||+|||+++..++..+...+. +|++..... ..+++..++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~v~~~~~~~-~~~~~~~~~~~~ 73 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGD-PCIYVTTEE-SRDSIIRQAKQF 73 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTC-CEEEEESSS-CHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-eEEEEEccc-CHHHHHHHHHHh
Confidence 458899999999999999988877766654 787776543 244555655443
No 123
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.39 E-value=0.019 Score=61.18 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=27.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH-HhCCCcEEEEc
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMA-KQGQGQVLVCA 441 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~-~~~~~rILV~A 441 (779)
...+|+||||||||+++..+...+. ..+. +|+.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~ 188 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLH 188 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEE
Confidence 5789999999999999998888887 6553 666543
No 124
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.34 E-value=0.013 Score=61.28 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=18.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
...||.||||||||+++..+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5689999999999998766654
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.34 E-value=0.017 Score=57.14 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhhcC----CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQR----PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 392 N~sQ~~AV~~aL~~----~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.+.+.+.+...+.. ...+|.||||||||+++..+...+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34556666666542 3789999999999998877766554
No 126
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.27 E-value=0.008 Score=60.56 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+|.||||||||+.+..++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999988877654
No 127
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.26 E-value=0.0086 Score=59.95 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
-+.+|.|+||||||+.++..+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 368999999999999887766544
No 128
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.24 E-value=0.015 Score=54.55 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI 426 (779)
....+|+||||||||+++..+.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998765543
No 129
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.14 E-value=0.015 Score=60.69 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
....+|.||||||||+++..+...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999877666544
No 130
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.10 E-value=0.016 Score=62.80 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
....|+.||||||||+++..+...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999776665543
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.07 E-value=0.021 Score=60.99 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.-.||.||||||||+++..+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999987666544
No 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.06 E-value=0.022 Score=58.12 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=18.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
...||.||||||||+++..+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999987766554
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.00 E-value=0.028 Score=60.64 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhc-------CCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 393 ASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 393 ~sQ~~AV~~aL~-------~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
+.+.+.+...+. .+..+|.||||||||+++..++..+...
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555554432 3468999999999999988887776544
No 134
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.97 E-value=0.013 Score=61.93 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
...|++||||||||+++..++..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999877777655
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.97 E-value=0.022 Score=59.78 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
..||.||||||||+++..+...+...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999888777666543
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.96 E-value=0.021 Score=61.62 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcC-------C--eEEEEcCCCChHHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQR-------P--ISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 393 ~sQ~~AV~~aL~~-------~--l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
+.+.+.+...+.. . ..+|.||||||||+++..+...+.
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4555555554431 3 789999999999999877776553
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.91 E-value=0.027 Score=60.42 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhc-------CCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 393 ASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 393 ~sQ~~AV~~aL~-------~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
+.+.+.+...+. ....+|.||||||||+++..++..+...
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 566666766654 3578999999999999988877766544
No 138
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.90 E-value=0.085 Score=56.37 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.-.||.||||||||+++..++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 358999999999999877766554
No 139
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.90 E-value=0.023 Score=58.06 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
.++.|+||+|||+++..+...+...|. +|+++
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~-~V~v~ 40 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGV-RVMAG 40 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC-CEEEE
Confidence 678999999999999999999988775 66544
No 140
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.89 E-value=0.023 Score=56.43 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=32.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCc
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (779)
.+.++.||+|+|||+.+..++..+..++. +|++..|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~-kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQ-KIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEec
Confidence 47899999999999999999988876664 99999876
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.81 E-value=0.011 Score=55.46 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAI 425 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~i 425 (779)
....+|+||||||||+++..+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGG
T ss_pred CCcEEEECCCCccHHHHHHHH
Confidence 456899999999999865443
No 142
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.015 Score=65.15 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
=.|+.||||||||.++.+++..
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999987766654
No 143
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.72 E-value=0.0093 Score=61.45 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
-.||.||||||||+++..+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999987766653
No 144
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.67 E-value=0.03 Score=59.78 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
..+++|.|+||+|||+.+..++..++.++ .+||+.+.- ...+++..|+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC-CCHHHHHHHHHH
Confidence 45899999999999999999988887665 589888865 456677777764
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.61 E-value=0.026 Score=59.32 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=29.1
Q ss_pred CHHHHHHHHHhhcC---CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 392 N~sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.+...+.+...+.. +..+|.||||||||+++..+...+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 45666666666642 3689999999999998877776653
No 146
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.56 E-value=0.023 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
...+|.||||||||+++..+...+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 3689999999999998776665543
No 147
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.018 Score=63.75 Aligned_cols=22 Identities=45% Similarity=0.788 Sum_probs=18.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
=.|+.||||||||.++.+++..
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 3789999999999987766654
No 148
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.49 E-value=0.032 Score=59.09 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhhc----CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcH
Q 004009 391 LNASQVFAVKSVLQ----RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (779)
Q Consensus 391 LN~sQ~~AV~~aL~----~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (779)
.++...+.+...+. ..+.|+.||||||||+++..+...+ ..+++-+..++
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~ 83 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSD 83 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTT
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEcccc
Confidence 35667777777765 2466788889999999877765443 23555544443
No 149
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.47 E-value=0.031 Score=57.25 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.-.+|.||||||||+++..+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35789999999999987766544
No 150
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.018 Score=64.41 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=18.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
=.|+.||||||||.++.+++..
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999987776654
No 151
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.45 E-value=0.036 Score=59.65 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=20.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
...||.||||||||+++..+...+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999887777665
No 152
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.03 Score=63.94 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+..||.||||||||+++..++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999887766554
No 153
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.37 E-value=0.068 Score=63.01 Aligned_cols=64 Identities=28% Similarity=0.383 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHhh---cCC--eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVL---QRP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL---~~~--l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
.++..|..|+...+ ..+ ..++.|.+|||||.+++.++.++ +.++||++++...+.++.+.|...
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 56778888887654 233 46789999999999999887654 348999999999999999999876
No 154
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.36 E-value=0.029 Score=59.71 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHHHHHHHhh-cCCeEEEEcCCCChHHHHHHHHHHH
Q 004009 394 SQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 394 sQ~~AV~~aL-~~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
...+++..++ .....++.||||||||+++..+...
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3344444443 3678899999999999987666543
No 155
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.34 E-value=0.038 Score=59.25 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhhcC-Ce--EEEEcCCCChHHHHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQR-PI--SLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 392 N~sQ~~AV~~aL~~-~l--~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
++...+.+...+.. .+ +++.||||||||+++..++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34455555555543 33 89999999999998887776654
No 156
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.34 E-value=0.078 Score=59.30 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=27.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHh-CCCcEEEEcC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAP 442 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~-~~~rILV~Ap 442 (779)
+..+|.||||||||+++..+...+... +..+++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 468999999999999888777766655 2446665543
No 157
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.30 E-value=0.035 Score=58.66 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=18.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
...||.||||||||+++..+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999987766544
No 158
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.26 E-value=0.063 Score=61.19 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=39.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC---cHHHHHHHHHHHHhcCCeEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVVR 463 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap---SN~AVD~L~erL~~~~l~vvR 463 (779)
..+|.|+||+||||++..+++.+.+.+. +|++++. ...|++.+...-...++.++.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEc
Confidence 4678899999999999999998887655 6666654 456666665443444555443
No 159
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.19 E-value=0.03 Score=61.01 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=34.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI 454 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL 454 (779)
.+++|.||||+|||+.+..++..+...+. +|+.++.-...-...++++
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg-~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGG-VAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSCCCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEecccccchHHHHHc
Confidence 47899999999999999998888776654 7777765443333344443
No 160
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.16 E-value=0.031 Score=59.55 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=18.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
...||.||||||||+++..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999998766643
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.15 E-value=0.036 Score=59.49 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=19.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..++|.||||||||+++..+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999876665543
No 162
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.11 E-value=0.065 Score=56.84 Aligned_cols=54 Identities=30% Similarity=0.468 Sum_probs=37.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCc---HHHHHHHHHHHHhcCCeE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS---NVAVDQLAEKISATGLKV 461 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS---N~AVD~L~erL~~~~l~v 461 (779)
+.+|.|++|+||||++..++..+...+. +|+++..- +.|.+++.......++.+
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~-~v~l~~~D~~r~~a~~ql~~~~~~~~v~v 156 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGF-KVGLVGADVYRPAALEQLQQLGQQIGVPV 156 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTC-CEEEEECCCSSSHHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEecCCCCHHHHHHHHHHhccCCeEE
Confidence 5678899999999999999988876654 77776542 456665544333334444
No 163
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.025 Score=62.96 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
=.|+.||||||||.++.+++..
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 3789999999999987766654
No 164
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.11 E-value=0.045 Score=58.02 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=28.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
.+.+|.||+|+||||++..++..+....+.+|++++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 478899999999999999999887753334777764
No 165
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.07 E-value=0.053 Score=56.43 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=34.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhC----------CCcEEEEcCcHHHHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG----------QGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~----------~~rILV~ApSN~AVD~L~erL~~ 456 (779)
..+++|.||||+|||+.+..++..+. .+ ..+|++++.-... +.+..|+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~ 89 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHA 89 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHH
Confidence 56899999999999999988887544 43 3577776654432 555555543
No 166
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.07 E-value=0.027 Score=60.41 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhC-CCcEEEEcCcHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNV 445 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~~rILV~ApSN~ 445 (779)
.++++|.||||+|||+.+..++....+.+ ..+++.+..-+.
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 45789999999999999999998888762 457777765443
No 167
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.03 E-value=0.027 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=18.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
...||.||||||||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999987766654
No 168
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.03 E-value=0.03 Score=52.99 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+.+|.||||+||||++..+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987766544
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.02 E-value=0.042 Score=57.49 Aligned_cols=39 Identities=36% Similarity=0.603 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhhcC---CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 392 N~sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
++...+.+...+.. +..+|.||||||||+++..++..+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 45566666666542 3489999999999998887776664
No 170
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.02 E-value=0.041 Score=59.80 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
....|+.||||||||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999876665443
No 171
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.97 E-value=0.038 Score=56.84 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
....+|.||||||||+++..+..
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHH
Confidence 56789999999999987655544
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.95 E-value=0.043 Score=59.47 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=18.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
...||.||||||||+++..+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999987766543
No 173
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.89 E-value=0.066 Score=56.10 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=35.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (779)
..+++|.||||+|||+.+..++..+....+.+|++...... ..++..|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHH
Confidence 46899999999999999988887776653347887765432 234555543
No 174
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.87 E-value=0.047 Score=59.81 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhh---------------cCCeEEEEcCCCChHHHHHHHHHH
Q 004009 392 NASQVFAVKSVL---------------QRPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 392 N~sQ~~AV~~aL---------------~~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
.+.+++.+...+ .....||.||||||||+++..+..
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456666666655 124689999999999997766543
No 175
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.84 E-value=0.062 Score=60.30 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (779)
..+++|.|+||+|||+.+..++..+....+.+|++.+.-.. ..++..|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHH
Confidence 46899999999999999999998887754458998886543 357777764
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.82 E-value=0.034 Score=59.24 Aligned_cols=37 Identities=41% Similarity=0.581 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcC---CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 394 SQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 394 sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
...+.+...+.. +..+|.||||||||+++..+...+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345556665542 4589999999999998887776654
No 177
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.81 E-value=0.084 Score=51.16 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=22.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL 438 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rIL 438 (779)
+..|.||||+||||++..+...+-..+- +++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~-~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK-KVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC--EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEE
Confidence 4679999999999998887776655443 444
No 178
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.78 E-value=0.086 Score=58.94 Aligned_cols=54 Identities=24% Similarity=0.412 Sum_probs=37.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHh-CCCcEEEEcC---cHHHHHHHHHHHHhcCCeE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAP---SNVAVDQLAEKISATGLKV 461 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~-~~~rILV~Ap---SN~AVD~L~erL~~~~l~v 461 (779)
..+|.|++|+|||||++.+++.+.+. +. +|++++- ...|++++...-...++.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v 159 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDF 159 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeE
Confidence 56678999999999999999999887 54 7766532 3456666543323334444
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.78 E-value=0.035 Score=59.38 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhh-cC---CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEE
Q 004009 392 NASQVFAVKSVL-QR---PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (779)
Q Consensus 392 N~sQ~~AV~~aL-~~---~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (779)
++...+++..++ .. +..+|.||||||||+++..++..+.....+.|.+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~ 70 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence 556666677666 32 3489999999999998877776665443334443
No 180
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.70 E-value=0.068 Score=52.05 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=29.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~ 445 (779)
++..|.|++|+||||++..++..|...+ .+|.++.....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g-~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG-WRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC-CeeeEEEeCCC
Confidence 5678999999999999988888776654 37776665443
No 181
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.027 Score=63.26 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=17.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
=.|+.||||||||.++.+++..
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 4789999999999977666544
No 182
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.61 E-value=0.035 Score=58.56 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=19.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
...+|.||||||||+++..+...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999877766543
No 183
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.60 E-value=0.035 Score=53.12 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=18.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+.+|.||||+||||++..+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999987766544
No 184
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.57 E-value=0.066 Score=57.44 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=27.1
Q ss_pred CHHHHHHHHHhhc----CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQ----RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 392 N~sQ~~AV~~aL~----~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+...+.+..++. ...++|.||||||||+++..+...+
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555665554 2357999999999999887776655
No 185
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.49 E-value=0.064 Score=58.20 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (779)
..+++|.||||+|||+.+..++..+.+.+. ++++++...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~-~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGG-IAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEECCC
Confidence 357999999999999999999988877654 777766543
No 186
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.47 E-value=0.057 Score=60.48 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.-.||.||||||||+++..+...+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999877666543
No 187
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.40 E-value=0.07 Score=58.08 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (779)
..+++|.||||+|||+.+..++..+.+.+. ++++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~-~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 458999999999999999999988887654 77777653
No 188
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.39 E-value=0.082 Score=59.12 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=40.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
..+++|.|+||+|||+.+..++..++...+.+|++.+.-.. .+++..|+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHH
Confidence 45899999999999999999998887754558998877543 4577777653
No 189
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.39 E-value=0.17 Score=53.71 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=33.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC-c--HHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP-S--NVAVDQLAE 452 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap-S--N~AVD~L~e 452 (779)
.+..|.||.|+||||++..+...+... .++|++.+. + ..|++++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~ 149 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEI 149 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHH
Confidence 367899999999999999888766554 458887753 2 334566543
No 190
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.39 E-value=0.073 Score=57.57 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
..+++|.|+||+|||+.+..++..+...+ .+|++.+.-- ..+++..|+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g-~~Vl~fSlEm-s~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD-RGVAVFSLEM-SAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CEEEEEESSS-CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCC-CHHHHHHHHHH
Confidence 46899999999999999999998887754 5899887743 34567777654
No 191
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.39 E-value=0.07 Score=59.83 Aligned_cols=24 Identities=46% Similarity=0.747 Sum_probs=19.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.-.|+.||||||||+++..+...+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 358999999999999887776654
No 192
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.35 E-value=0.044 Score=52.79 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=23.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+.+|.||||+||||++..+...+-..+. .+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~-~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGI-NNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCc-eEEEE
Confidence 5689999999999988877766543332 44444
No 193
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.34 E-value=0.069 Score=57.25 Aligned_cols=35 Identities=37% Similarity=0.471 Sum_probs=28.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
.+.+|.||+|+||||+++.++..+...+ ++|++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g-~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELG-YKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEe
Confidence 3678899999999999999998877665 4777764
No 194
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.33 E-value=0.047 Score=52.63 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=20.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.+.+|.||||+||||++..+...+-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999998877776553
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.28 E-value=0.042 Score=59.62 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
-.||.||||||||+++..++..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999887766554
No 196
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.27 E-value=0.069 Score=55.91 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcC---CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 393 ~sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
+...+.+...+.. +..+|.||||||||+++..+...+.
T Consensus 27 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 27 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3455566666542 3489999999999998887776654
No 197
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.27 E-value=0.044 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (779)
+.+|.||||+||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999998766554
No 198
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.26 E-value=0.076 Score=59.08 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHhhc--CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 391 LNASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 391 LN~sQ~~AV~~aL~--~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+...+..++..++. .++++|.||.|+||||++..++..+ ....++|++.
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEe
Confidence 55677777777664 4689999999999999998877654 2223466654
No 199
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.26 E-value=0.069 Score=58.05 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.4
Q ss_pred CeEEE--EcCCCChHHHHHHHHHHHHHH
Q 004009 406 PISLI--QGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 406 ~l~LI--qGPPGTGKT~tla~iI~~L~~ 431 (779)
...+| .||||+|||+++..+...+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 46788 999999999998888776644
No 200
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.24 E-value=0.055 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
....+|.||||+||||++..+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999887776544
No 201
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.23 E-value=0.045 Score=61.22 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
..+|.|+||+||||++..++..+.+.+. +|++++
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~-kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGL-KPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHC-CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEe
Confidence 6789999999999999999998887765 676664
No 202
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.18 E-value=0.044 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=16.9
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAI 425 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~i 425 (779)
.+.+|.||||+||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46789999999999977665
No 203
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.16 E-value=0.065 Score=60.85 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=40.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
..+++|.|+||+|||+.+..++..++...+.+||+++.-.. ..++..|+..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHH
Confidence 46899999999999999999998887653458998887543 4577777653
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.13 E-value=0.066 Score=60.10 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=18.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+.++|+||||||||+++..+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999977655543
No 205
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.09 E-value=0.039 Score=58.74 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+..||.||||||||+++..+...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHh
Confidence 456899999999999977666543
No 206
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.09 E-value=0.087 Score=51.94 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
..+++|.||||+|||+.+..++. ..+ .++++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~-~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSG-KKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHC-SEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcC-CcEEEEEC
Confidence 45899999999999999888876 344 46666654
No 207
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.05 E-value=0.059 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+++|.||||+|||+++..++...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4589999999999999998887754
No 208
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.02 E-value=0.043 Score=57.39 Aligned_cols=20 Identities=45% Similarity=0.853 Sum_probs=16.9
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~ 427 (779)
.+|.||||||||+++..+..
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999998766554
No 209
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.01 E-value=0.054 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.|+||+||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999887776554
No 210
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.01 E-value=0.095 Score=50.74 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=25.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
.+.+|.|+||+||||++..+...+-..+. ++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~-~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGY-RVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEe
Confidence 46789999999999998887777655443 56554
No 211
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.94 E-value=0.087 Score=57.59 Aligned_cols=39 Identities=31% Similarity=0.366 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (779)
..+++|.||||+|||+.+..++..+.+.+. +|++++.-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~-~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG-TCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC-eEEEEECCC
Confidence 358999999999999999999988877654 787776654
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.92 E-value=0.18 Score=50.72 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH-HhCCCcEEEEc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA-KQGQGQVLVCA 441 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~-~~~~~rILV~A 441 (779)
..++.|.||+|+||||++..++...+ ..+. .+++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~-~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE-PGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC-CEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 46899999999999999988876555 5554 444443
No 213
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.91 E-value=0.046 Score=55.80 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+|.||||||||+++..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999987666543
No 214
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.90 E-value=0.082 Score=55.62 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=18.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+.+|.||||+||||++..+...
T Consensus 35 livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999987776543
No 215
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.85 E-value=0.092 Score=55.52 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 393 ~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+.+.+.+.. +..++.+|.||+|+|||+.+.++...+
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence 456667777 766899999999999999988776553
No 216
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.82 E-value=0.22 Score=54.20 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=35.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC-c--HHHHHHHHHHHHhcCCeE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP-S--NVAVDQLAEKISATGLKV 461 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap-S--N~AVD~L~erL~~~~l~v 461 (779)
+..|.||.|+||||++..+...+... .++|++.+. + ..|++++...-...++.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~ 215 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEI 215 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEE
Confidence 67899999999999999888766554 458887753 2 235566543322334444
No 217
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.80 E-value=0.062 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.|||||||||++..+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999888777655
No 218
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.79 E-value=0.28 Score=56.88 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHh-CCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~-~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
.|++.|+..+...-.....+|.+|.|+|||++++.++...+.. +..+|+++++|...+..+.+++..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 5899999988765346789999999999999988666544433 445899999999999888877654
No 219
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.78 E-value=0.069 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+.+|.||||+||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568899999999999877666543
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.73 E-value=0.18 Score=54.28 Aligned_cols=55 Identities=31% Similarity=0.442 Sum_probs=37.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc-Cc--HHHHHHHHHHHHhcCCeE
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA-PS--NVAVDQLAEKISATGLKV 461 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A-pS--N~AVD~L~erL~~~~l~v 461 (779)
.+..|.||.|+||||++..+...+...+ ++|++.+ .+ ..|.+++...-...++.+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~-g~V~l~g~D~~r~~a~eql~~~~~~~gv~~ 187 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHG-FSVVIAASDTFRAGAIEQLEEHAKRIGVKV 187 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEECCSSTTHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC-CEEEEEeecccccchHHHHHHHHHHcCceE
Confidence 3788999999999999998887665554 4776654 32 335566655444444443
No 221
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.65 E-value=0.072 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=19.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+..+|.|+||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999877666543
No 222
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.60 E-value=0.068 Score=57.17 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhC-----CCcEEEEcCcHH-HHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-----QGQVLVCAPSNV-AVDQLAEKISA 456 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~-----~~rILV~ApSN~-AVD~L~erL~~ 456 (779)
..+++|.||||+|||+.+..++....... ..+++.++..+. -.+.+.+++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988887654331 347777765542 13445554443
No 223
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.59 E-value=0.11 Score=53.62 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=25.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
.+.+|.|+||+||||++..+...|...+. .++++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~-~~i~~ 38 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNI-DVIVL 38 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCC-EEEEE
Confidence 36789999999999998888776654443 55533
No 224
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.55 E-value=0.071 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+.+|.|+|||||||++..+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999987766544
No 225
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.51 E-value=0.066 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=17.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
.+..|.||||+||||++..+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999997765544
No 226
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.44 E-value=0.11 Score=54.35 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCCHHHHHH-HHHhhcC-----CeEEEEcCCCChHHHHHHHHHHH
Q 004009 390 ELNASQVFA-VKSVLQR-----PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 390 ~LN~sQ~~A-V~~aL~~-----~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
..|..+... +..-+.. .-.++.||||||||..+..++..
T Consensus 83 g~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 83 GYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 577777544 4444442 25899999999999988776654
No 227
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.41 E-value=0.099 Score=58.92 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
+...+.+..++. .+..||.||||||||+++-.+...+.
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 455555666653 45679999999999998777666554
No 228
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.41 E-value=0.07 Score=60.78 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=20.7
Q ss_pred hcCCeEEEEcCCCChHHHHHHHHHHH
Q 004009 403 LQRPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 403 L~~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
......||.||||||||+++..+...
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHH
Confidence 44678999999999999976665543
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.41 E-value=0.077 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
....+|.||||+||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578899999999999887777554
No 230
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.41 E-value=0.31 Score=57.31 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHhh---cCC--eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 390 ELNASQVFAVKSVL---QRP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL---~~~--l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
..|..|..|+...+ ..+ ..++.|.+|+|||.+++.++.++ +.++||++++...+.++.+.|...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHH
Confidence 45778888887644 233 46789999999999999887554 348999999999999999999876
No 231
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.40 E-value=0.076 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.639 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+.+|.|||||||||++..+...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999877766443
No 232
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=92.34 E-value=0.32 Score=53.47 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHH-HhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA-KQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~-~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
.|++.|+..+...-.....+|..|-+.|||++++.++...+ ..++.+|+++|+|...+..+.+++..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 68999999887654567899999999999999887766543 33556899999999988888877654
No 233
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.34 E-value=0.2 Score=48.13 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=23.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (779)
+.+|.|+|||||||++..+...+-..+- .++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~-~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGY-FVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEE
Confidence 4679999999999988777766544333 4443
No 234
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.32 E-value=0.08 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=18.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+|.|||||||||++..+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47889999999999877666543
No 235
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.29 E-value=0.13 Score=55.62 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=29.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
....|.|+||+|||+++..++..+...+. +|+++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~-kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGH-RVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCC-ceEEEec
Confidence 36789999999999999999988876654 7777654
No 236
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.26 E-value=0.08 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+.+|.||||+||||++..+...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999877666544
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.25 E-value=0.077 Score=54.67 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+.+|.|||||||||++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999877776543
No 238
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.24 E-value=0.082 Score=51.21 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+.+|.||||+||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999877766543
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.19 E-value=0.27 Score=55.74 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=32.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE-cCcH--HHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSN--VAVDQLAE 452 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~-ApSN--~AVD~L~e 452 (779)
+++|.||.|+||||++..+...+... .++|++. +.+. .|++++..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~~r~aa~eQL~~ 342 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRAAAVEQLQV 342 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCTTCHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcccchhhHHHHHH
Confidence 67899999999999998887665544 4588886 3332 34565543
No 240
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.16 E-value=0.08 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+|.||||+||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999877765543
No 241
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.16 E-value=0.065 Score=55.63 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (779)
++|.||||||||+++..+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 789999999999987666543
No 242
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.13 E-value=0.12 Score=57.85 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
..+++|.|+||+|||+.+..++.+++..+ .+||+.+.-. ..+++..|+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g-~~vl~fSlEm-s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEM-GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT-CEEEEECSSS-CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC-CEEEEEECCC-CHHHHHHHHHH
Confidence 46899999999999999999999888774 5899887653 34566666653
No 243
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.13 E-value=0.093 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+.+|.||||+||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999877666543
No 244
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.11 E-value=0.084 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+.+|.|+|||||||++..+...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999987766544
No 245
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.07 E-value=0.091 Score=49.85 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=19.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.|+||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999877666543
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.07 E-value=0.084 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.||||+||||++..+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999877666544
No 247
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.04 E-value=0.073 Score=60.44 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=17.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
.-.||.||||||||+++..+..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999997766543
No 248
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.97 E-value=0.12 Score=52.78 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
..+.++.|.+|+||||++..++..+. .+ .+|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g-~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DN-YKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TT-SCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CC-CeEEEEe
Confidence 35788999999999999999998887 55 4887775
No 249
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.90 E-value=0.084 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
..+.+|.||||+||+|.+..++..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357788999999999987666654
No 250
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.89 E-value=0.15 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
..+|+.||||||||+++..++..+..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhC
Confidence 35899999999999998888877653
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.87 E-value=0.1 Score=56.29 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHh-----CCCcEEEEcCcHH-HHHHHHHHHHhc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ-----GQGQVLVCAPSNV-AVDQLAEKISAT 457 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~-----~~~rILV~ApSN~-AVD~L~erL~~~ 457 (779)
..+++|.||||+|||+.+..++...... ...+++.++..+. ..+.+.+++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3588999999999999988887764331 1347777766553 245555555443
No 252
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.87 E-value=0.1 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
...+|.|+|||||||++..+...|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999876665443
No 253
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.87 E-value=0.094 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+.+|.|+||+||||.+..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999877766544
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.83 E-value=0.078 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=18.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
.+.+|.||||+||||++..+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4788999999999998766543
No 255
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.77 E-value=0.076 Score=52.70 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=16.8
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+|.|||||||||++..+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999987666543
No 256
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.76 E-value=0.095 Score=51.50 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
.+.+|.|+|||||||++..+...+-.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999988877766543
No 257
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.75 E-value=0.14 Score=55.75 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (779)
.++++|.||.|+||||++..++..+-....++|+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 56899999999999999988887665543445543
No 258
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.71 E-value=0.097 Score=51.49 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=22.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQG 433 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~ 433 (779)
.+.+|.|+|||||||++..+...+-..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999888776664433
No 259
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.71 E-value=0.29 Score=54.54 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=37.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC---cHHHHHHHHHHHHhcCCeEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVVR 463 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap---SN~AVD~L~erL~~~~l~vvR 463 (779)
+.+|.||+|+||||++..++..+...+ .+|++... ...|.+++...-...++.++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g-~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 567789999999999999998877655 47776642 344555554332334555543
No 260
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.70 E-value=0.18 Score=49.10 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
-++..|.||+|+||||++..++..+...+. +|-++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~-~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGI-RPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCC-ceeEEe
Confidence 367899999999999999888877655443 554443
No 261
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.68 E-value=0.1 Score=52.29 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=16.9
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+|.||||+||+|.+..++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999977666644
No 262
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.65 E-value=0.19 Score=53.90 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
....+|.||||||||+.+..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356799999999999998888765
No 263
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.65 E-value=0.13 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
....||.||||||||+++..+..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHH
Confidence 45789999999999987655543
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.65 E-value=0.1 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=19.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.||||+||||.+..+...+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999877766543
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.60 E-value=0.11 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+..|.||||+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578899999999999877766544
No 266
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.55 E-value=0.4 Score=50.55 Aligned_cols=45 Identities=29% Similarity=0.405 Sum_probs=31.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC---cHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLA 451 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap---SN~AVD~L~ 451 (779)
....|.|++|+||||++..+...+...+ ++|++... .+.+..++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~~~d~~~~~~~~ql~ 146 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADTQRPAAREQLR 146 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEECCSSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcccHhHHHHHH
Confidence 3566779999999999999988776654 48877653 244444443
No 267
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.52 E-value=0.1 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.||||+||||.+..+...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999877766543
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.51 E-value=0.11 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+.+|.||||+||||++..+...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46789999999999987766544
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.41 E-value=0.15 Score=55.67 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
..+++|.||+|+||||++..++..+-..+.++|++.-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 4689999999999999999888766544345776643
No 270
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.24 E-value=0.07 Score=51.19 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=14.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
.+.+|.|+||+||||++..+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999998766544
No 271
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.16 E-value=0.17 Score=56.69 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=18.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.-.|+.||||||||+++..++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 458999999999999876665443
No 272
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.15 E-value=0.12 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+.+|.||||+||||.+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999877766554
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.11 E-value=0.13 Score=49.96 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
...+|.|+|||||||++..+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999987665543
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.06 E-value=0.13 Score=48.52 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=18.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+|.|+||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999876665543
No 275
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.03 E-value=0.32 Score=47.82 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=23.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+..|.||+|+||||++..+...+-..+ ..|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~-~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQG-ISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcC-CeEEEe
Confidence 678999999999998877765554333 355544
No 276
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.02 E-value=0.13 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+|.||||+||||++..+...+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999877666443
No 277
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.96 E-value=0.13 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
...+|.|+|||||||++..+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887776554
No 278
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.93 E-value=0.29 Score=49.11 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=27.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE-cCcH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSN 444 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~-ApSN 444 (779)
.+.+|.||+|+||||.+..+...|-..+. +|.++ -|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~-~v~~~~~p~~ 45 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGI-EVQLTREPGG 45 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEEESSCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCC-CcccccCCCC
Confidence 46789999999999998888877755544 55433 3443
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.89 E-value=0.11 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=17.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+.+|.|||||||||++..+...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987666543
No 280
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.88 E-value=0.1 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+.+|.||||+||||.+..+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999977666543
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.84 E-value=0.12 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=17.7
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (779)
+.+|.||||+||||++..+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999998877653
No 282
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.84 E-value=0.2 Score=53.31 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=28.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
.+..|.||.|+||||++..+...+... .++|++.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~ 138 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAG 138 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEee
Confidence 478899999999999998887665443 458877653
No 283
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=90.81 E-value=0.21 Score=52.54 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhc-CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 393 ~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+.+.+.+..++. .++.+|.||+|+|||+.+.++...
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 455666666664 478999999999999988776644
No 284
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.77 E-value=0.4 Score=49.90 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=27.5
Q ss_pred CeEEEEcC-CCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLIQGP-PGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LIqGP-PGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
...+|.++ ||.|||++++.++..+.+.+. |||++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~-rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGY-KTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCC-eEEEE
Confidence 35667665 999999999999999887765 88776
No 285
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.73 E-value=0.19 Score=54.92 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=42.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEecc
Q 004009 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCA 466 (779)
Q Consensus 404 ~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~vvRl~~ 466 (779)
.++.++|.||+|+|||+++..++.++...+ .+|++.=+.+.... +++ ..+-.+++++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~-~~~~~~D~~~~~~~-~~~---~~gg~~~~~~~ 91 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG-SRVIIIDPEREYKE-MCR---KLGGVWINCTG 91 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEESSCCSHH-HHH---HTTCEEEETTS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC-CEEEEEeCCcCHHH-HHH---HcCCEEEEECC
Confidence 367899999999999999999998887655 48999887654332 222 23556666654
No 286
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.71 E-value=0.13 Score=54.59 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH------------hC---CCcEEEEcCcHH-HHHHHHHHHHhc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAK------------QG---QGQVLVCAPSNV-AVDQLAEKISAT 457 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~------------~~---~~rILV~ApSN~-AVD~L~erL~~~ 457 (779)
..+++|.||||+|||+.+..++..... .+ ..+++.++..+. -.+.+.+++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 357999999999999999888765321 12 157887776553 145555555433
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.70 E-value=0.12 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
..+.+|.||||+||||++..++..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999977666544
No 288
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.66 E-value=0.14 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+|.|||||||||.+..+...+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999877766554
No 289
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.65 E-value=0.21 Score=53.92 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
..+.++.|-+|+||||+++.++..+.+.+. |||++.-
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlvD~ 62 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGL-KVVIVST 62 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSC-CEEEEEC
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 347788999999999999999999988765 8887764
No 290
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.59 E-value=0.14 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+|.||||+||||.+..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999877766544
No 291
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.58 E-value=0.25 Score=52.43 Aligned_cols=23 Identities=17% Similarity=-0.064 Sum_probs=19.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+.+|+.||||||||+++..++..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999987776653
No 292
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.55 E-value=0.19 Score=60.03 Aligned_cols=37 Identities=24% Similarity=0.475 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+...+.+..++. ....|+.||||||||+++-.+...+
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 556666666663 3568999999999999877666655
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.52 E-value=0.22 Score=49.87 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHH
Q 004009 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 391 LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
-+..|+.++..+-...++.|.||.|+||||.+..+.-.
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678888888766779999999999999987665543
No 294
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.41 E-value=0.14 Score=58.00 Aligned_cols=22 Identities=45% Similarity=0.685 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
-.||.||||||||+++..+...
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999987766653
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.35 E-value=0.16 Score=49.81 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 391 LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
++..++.+... -...+..|.||+|+||||++..+...+-
T Consensus 12 ~~~~~~~~~~~-~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 12 VEKVDRQRLLD-QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCHHHHHHHHT-SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555544321 1235778999999999998877766654
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.32 E-value=0.11 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=19.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.||||+||||++..+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999887766544
No 297
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.28 E-value=0.17 Score=49.32 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.|.||+|+||||++..+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999887666544
No 298
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.25 E-value=0.24 Score=52.82 Aligned_cols=36 Identities=39% Similarity=0.558 Sum_probs=30.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
.+.++.|-+|+||||+++.++..+.+.+. |||++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlvD~ 50 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGK-KTLVIST 50 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCC-cEEEEeC
Confidence 47788999999999999999999988765 8887754
No 299
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.21 E-value=0.22 Score=55.12 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD 448 (779)
...++|.||+|+|||+++..++.+++..+. +++|.=+......
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~-~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGD-RMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTC-EEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCCchhH
Confidence 467899999999999998888988888764 8999988776654
No 300
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.17 E-value=0.35 Score=47.84 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 392 N~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
...++.... .-...+.+|.|+||+||||++..+...+-
T Consensus 13 ~~~~r~~~~-~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 13 TRSERTELR-NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CHHHHHHHH-TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHhhccc-CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555422 22234678999999999998877776654
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.15 E-value=0.17 Score=51.33 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+.+|.||||+||||++..+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999877666443
No 302
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.10 E-value=0.26 Score=51.08 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
..+++|.||.|+||||++..++..+-....++|++.-
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 4689999999999999988877655433245776653
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.08 E-value=0.16 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
..+.+|.||+|+||||++..++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35788999999999998766553
No 304
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.96 E-value=0.1 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+.+|.||||+||||++..+...
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999987666544
No 305
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=89.86 E-value=0.23 Score=51.65 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhcCCe
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK 460 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~l~ 460 (779)
...+||.|+||||||+.+...++.-++++. +++++++. ...++|..+....|++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge-~~~~~~~~-e~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN-LVGMFSIS-YPLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC-EEEEEECS-SCHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC-cEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 346899999999999777788888787754 88888884 4556777777766654
No 306
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.74 E-value=0.2 Score=48.40 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
..++.|.||+|+||||++..+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999987766543
No 307
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.68 E-value=0.5 Score=49.83 Aligned_cols=34 Identities=35% Similarity=0.552 Sum_probs=27.7
Q ss_pred CeEEEEcC-CCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLIQGP-PGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LIqGP-PGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
...+|.|+ ||.|||++++.++..|.+.+. |||++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~-rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQ-KVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCC-cEEEE
Confidence 45667766 899999999999999887764 88776
No 308
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.65 E-value=0.18 Score=57.94 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.++|.||||||||+++..+...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999776665544
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.63 E-value=0.21 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=18.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
....|.||||+||||++..+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999987666543
No 310
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.61 E-value=0.45 Score=48.63 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCC-cEEEEcCcHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG-QVLVCAPSNV 445 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~-rILV~ApSN~ 445 (779)
..+.+|.||||+||||.+..+...|-..+.. -++.--|+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t 68 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGT 68 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCC
Confidence 4578899999999999988888877666543 2333344433
No 311
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.56 E-value=0.31 Score=58.10 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
+.+.+.+...+. ....+|.||||||||+++..+...+..
T Consensus 192 ~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 192 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 455555666654 356899999999999988777766643
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.48 E-value=0.2 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
..+..|.||+|+||||++..+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999997766543
No 313
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.47 E-value=0.29 Score=49.60 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=24.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
.+.+|.||||+||||.+..+...+-. ...++.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 46789999999999988777765543 3355544
No 314
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.45 E-value=0.12 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
+.+|.||+|+||||.+..++..+-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 568999999999998877766553
No 315
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.41 E-value=0.2 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
..++.|.||+|+||||++..+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35788999999999998766554
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.39 E-value=0.2 Score=48.14 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCChHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAA 424 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~ 424 (779)
..++.|.||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34789999999999998874
No 317
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.38 E-value=0.36 Score=46.25 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
.+..|.|++|+||||++..+...+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35679999999999988777665543
No 318
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.21 E-value=0.71 Score=60.38 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~ 445 (779)
...++|.||||||||+.+..++....+++ .+++..+..+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G-~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEEcccc
Confidence 45799999999999999999988777665 48888776653
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.00 E-value=0.2 Score=49.14 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=16.4
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (779)
+..|.||||+||||++..+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999999876654
No 320
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.96 E-value=0.35 Score=55.92 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (779)
..+.++.|.+|+||||+++.++..+.+.+. |||++.--
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~-rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGK-RVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCC-cEEEEECC
Confidence 457899999999999999999999988765 88776543
No 321
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.93 E-value=0.15 Score=50.03 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (779)
+.+|.||+|||||+.+..++.. + .+++.++.....-+++.+|+...
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~-~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----A-PQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----C-SSEEEEECCCC------CHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc----C-CCeEEEecCCCCCHHHHHHHHHH
Confidence 3689999999999976655432 3 46777766554456777777543
No 322
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.87 E-value=0.49 Score=48.08 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
..+.+|.||+|+||||.+..+...|-..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3467899999999999998888777655
No 323
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.87 E-value=0.58 Score=46.99 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=32.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEE-EEcCcHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL-VCAPSNVAVDQLAEKI 454 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rIL-V~ApSN~AVD~L~erL 454 (779)
.+.+|.|++|+||||.+..+...|-..+...|. .--|+...+-+.+..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~ 53 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSL 53 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHH
Confidence 467889999999999998888777666542443 3344444443433333
No 324
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.83 E-value=0.18 Score=57.32 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+|.||||||||+++..+...
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999987665543
No 325
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.82 E-value=0.31 Score=55.55 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHhhcC-CeEEEEcCCCChHHHHHHHHHHH
Q 004009 391 LNASQVFAVKSVLQR-PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 391 LN~sQ~~AV~~aL~~-~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
++..+.+-+..++.. ..++|.||+|+||||++..++..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 566666667666654 46899999999999998776643
No 326
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.77 E-value=0.36 Score=47.61 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
.+..+|.|+||+|||+++..++..+... .++.++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i 63 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAM 63 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEE
Confidence 3567899999999999988888775332 355554
No 327
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.70 E-value=0.14 Score=61.54 Aligned_cols=20 Identities=50% Similarity=0.821 Sum_probs=16.7
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (779)
=.|+.||||||||+++..++
T Consensus 240 GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37999999999999876655
No 328
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.57 E-value=0.39 Score=51.64 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=27.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
.++.|.||||+||||++..++..+... .++|.+.+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~~ 91 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLAV 91 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEEE
Confidence 467899999999999988877665444 347777753
No 329
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.48 E-value=0.3 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
++..|.|||||||||++..+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 367899999999999877665443
No 330
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.46 E-value=0.3 Score=58.23 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+|+.||||||||+++..+...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999887776655
No 331
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.43 E-value=0.5 Score=57.22 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=27.1
Q ss_pred HHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 394 SQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 394 sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
...+.+..++. .+..+|.||||||||+++..++..+..
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 44444555553 345789999999999988777777654
No 332
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.37 E-value=0.43 Score=51.59 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=28.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
..+.|.|+||+||||++-.++..+...+ .+|.|++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~-~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERG-HKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcC-CeEEEEee
Confidence 4678999999999999998887766554 47877764
No 333
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.13 E-value=0.74 Score=47.86 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=31.6
Q ss_pred HHHHHHHHhhc--CC-eEEEE--cCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 394 SQVFAVKSVLQ--RP-ISLIQ--GPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 394 sQ~~AV~~aL~--~~-l~LIq--GPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+|...++..+. .. +++.. +-.|+||||+++.++..|.+.+. |||++
T Consensus 21 ~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~-rVlli 71 (298)
T 2oze_A 21 KILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNL-KVLMI 71 (298)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCC-eEEEE
Confidence 34444444443 33 44444 58999999999999988887664 88874
No 334
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.06 E-value=0.25 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=19.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.++.|.||+|+||||++..+...+-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3678999999999998776665443
No 335
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.06 E-value=0.31 Score=56.58 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=24.1
Q ss_pred HHHHHHHhhc-CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 395 QVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 395 Q~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
-.+.+..++. ...++|.||||||||+++..+...
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 3344554444 568899999999999977666543
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.03 E-value=0.24 Score=48.96 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
..++.|.||+|+||||++..++..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999998887775443
No 337
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.92 E-value=0.26 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.++.|.||.|+||||++..+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999987666543
No 338
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.82 E-value=0.52 Score=46.66 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
+++..+-+|+|||++++.++..|.+++. |||++=
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~-rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGY-RTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEc
Confidence 4455566999999999999999888765 898863
No 339
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.80 E-value=0.25 Score=57.41 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=16.4
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (779)
..|+.||||||||+++..+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSS
T ss_pred ceEEECCCchHHHHHHHHHH
Confidence 68999999999999655443
No 340
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.75 E-value=0.33 Score=47.84 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (779)
.+.+|.||.|+||||++..++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999765544
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.74 E-value=0.27 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=17.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+..|.|||||||||++..+...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999987665543
No 342
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=87.67 E-value=0.38 Score=51.79 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
..+.++.|-+|+||||+++.++..+.+.+. |||++.-
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~-~vllid~ 52 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRR-SVLLLST 52 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSS-CEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCC-cEEEEEC
Confidence 457889999999999999999988887665 7776654
No 343
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=87.64 E-value=0.44 Score=51.00 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
+.+.++.|-+|.||||+++.++..+.+.+. |||++.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~-rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRS-SVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSS-CEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 467889999999999999999999887764 887763
No 344
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.45 E-value=0.37 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.....|.||+|+||||++..+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5688999999999999876666543
No 345
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.44 E-value=0.32 Score=48.67 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=26.1
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 410 IQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 410 IqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
|.|-.|+||||+++.++..|.+.+ .|||++
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~g-~~Vlli 34 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASDY-DKIYAV 34 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTTC-SCEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCC-CeEEEE
Confidence 489999999999999999988776 488877
No 346
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.38 E-value=0.3 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (779)
+.+|.||||+||||.+..+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998766554
No 347
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.38 E-value=0.57 Score=53.39 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=33.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI 454 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL 454 (779)
..+++|.||||+|||+.+..++..+...+ .+++...+-+.. .++..++
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G-~~vi~~~~ee~~-~~l~~~~ 328 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANK-ERAILFAYEESR-AQLLRNA 328 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTT-CCEEEEESSSCH-HHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCC-CCEEEEEEeCCH-HHHHHHH
Confidence 45899999999999999888877665443 367666654432 3455544
No 348
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.33 E-value=0.5 Score=50.79 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=27.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
....|.|+||+||||++..++..+...+ .+|.++.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~-~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREG-LKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 4677899999999999988887766554 4776654
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.22 E-value=0.29 Score=47.80 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (779)
...|.||||+||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 467999999999998766554
No 350
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.03 E-value=0.36 Score=57.52 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+|+.||||||||+++..+...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999877666544
No 351
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.02 E-value=0.59 Score=47.55 Aligned_cols=34 Identities=32% Similarity=0.509 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
++++.+-.|+|||++++.++..|.+.+. +||++-
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~-~VlliD 38 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGH-DVTIVD 38 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCC-cEEEEE
Confidence 5667889999999999999999887764 888874
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.99 E-value=0.31 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=16.9
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (779)
.+..|.||||+||||++..+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999766544
No 353
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.97 E-value=0.2 Score=60.10 Aligned_cols=46 Identities=30% Similarity=0.483 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE----------cCcHHHHHHHHHHHHhc
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC----------APSNVAVDQLAEKISAT 457 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~----------ApSN~AVD~L~erL~~~ 457 (779)
.|+.||||||||.++.+++..+ +...+.+ ..|..++.++.++..+.
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~----~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTMWFGESEANVREIFDKARQA 569 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTT----TCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT
T ss_pred EEEecCCCCCchHHHHHHHHHh----CCceEEeccchhhccccchHHHHHHHHHHHHHHc
Confidence 6899999999998666555432 2233333 23455566666555443
No 354
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.94 E-value=0.36 Score=45.51 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.++.+|.||.|+|||+++-++...|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999877766553
No 355
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.72 E-value=0.4 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
....+|.|||||||||++..+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458899999999999987776643
No 356
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.62 E-value=0.4 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=18.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
-+..|.||||+||||++..+...+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999876665443
No 357
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.42 E-value=0.82 Score=46.78 Aligned_cols=34 Identities=32% Similarity=0.582 Sum_probs=28.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
-+++..+-.|+||||+++.++..|.+.+. |||++
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~-~Vlli 53 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGK-KVGIL 53 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCC-eEEEE
Confidence 35667788899999999999999888764 88885
No 358
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.34 E-value=0.38 Score=58.22 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.+||.||||||||+++..+...+.
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999997766665543
No 359
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.33 E-value=0.46 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
....|.||+|+||||++..+...+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3578999999999999888776655
No 360
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.27 E-value=0.4 Score=52.92 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
..+++|.||||+|||+.+..++...+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 45899999999999999887665443
No 361
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.24 E-value=0.52 Score=45.80 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
.+..+-.|+|||++++.+...|.+.+. +||++-
T Consensus 5 ~v~s~kgG~GKTt~a~~la~~la~~g~-~vlliD 37 (206)
T 4dzz_A 5 SFLNPKGGSGKTTAVINIATALSRSGY-NIAVVD 37 (206)
T ss_dssp EECCSSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 344577899999999999999988664 787774
No 362
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=86.24 E-value=0.6 Score=46.57 Aligned_cols=34 Identities=35% Similarity=0.625 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
+++..+-+|+|||++++.++..|.+.+. |||++=
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~-~VlliD 38 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGR-KVLAVD 38 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCC-eEEEEe
Confidence 4556678899999999999999888764 887763
No 363
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.23 E-value=0.45 Score=46.82 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
...+.|.||.|+||||++..+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999988766653
No 364
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.22 E-value=0.59 Score=47.26 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+++..+-.|+|||++++.++..|.+.+. |||++
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~-~Vlli 37 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQKGK-KTVVI 37 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCC-cEEEE
Confidence 4556778899999999999999988765 88875
No 365
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.11 E-value=0.64 Score=48.70 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
...|.|-.|+||||+++.++..|.+.+. |||++
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~-~Vlli 75 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQI 75 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4445599999999999999999988765 88776
No 366
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.01 E-value=0.58 Score=50.66 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH--HhCCCcEEEEcC
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA--KQGQGQVLVCAP 442 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~--~~~~~rILV~Ap 442 (779)
..+.++.|-+|+||||+++.++..+. ..+ .|||++.-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g-~~vllid~ 56 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPN-EQFLLIST 56 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTT-SCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC-CeEEEEEC
Confidence 46889999999999999999998888 455 47777754
No 367
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.91 E-value=0.35 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+.+|.||+|+|||+++..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999987776654
No 368
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=85.86 E-value=0.7 Score=47.96 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
..|.|-.|+||||+++.++..|.+.+. |||++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~-rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGK-KVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEE
Confidence 344789999999999999999988764 88875
No 369
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.82 E-value=0.46 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=18.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+..|.||.|+||||++..+...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999987665543
No 370
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.74 E-value=0.41 Score=45.80 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.++.+|.||.|+|||+++-.+...|
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999877665443
No 371
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.62 E-value=0.5 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
-+..|.|++||||||++..+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999987666543
No 372
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=85.60 E-value=0.64 Score=47.48 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=26.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 409 LIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 409 LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
.|.|-.|+||||+++.++..|.+.+. |||++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~G~-~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAMGK-TIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHCCC-cEEEE
Confidence 44789999999999999998887654 88875
No 373
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=85.60 E-value=0.6 Score=50.54 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH--HhCCCcEEEEcCc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA--KQGQGQVLVCAPS 443 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~--~~~~~rILV~ApS 443 (779)
..+.++.|-+|.|||++++.+...|. +.+ .|||++..-
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G-~rVLLvD~D 57 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPN-KQFLLISTD 57 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTT-SCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC-CeEEEEECC
Confidence 45788899999999999999999988 555 488777543
No 374
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.42 E-value=0.44 Score=46.22 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=16.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (779)
+..|.|+|||||||++..+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567999999999997665543
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.30 E-value=0.77 Score=49.16 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=22.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHh--CCCcEEEEc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~A 441 (779)
+..|.||+|+||||++..+. .++.. ...+|.++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~-~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK-ALLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHhcccCCCCeEEEEe
Confidence 67899999999999876554 44432 223555544
No 376
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.16 E-value=1.2 Score=49.02 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHHhCCC-c--EEEEcCcHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG-Q--VLVCAPSNVAVDQLAEK 453 (779)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~-r--ILV~ApSN~AVD~L~er 453 (779)
.--.+||...+. ..-.+|.||||+|||+++..++.++.+.+.. . ++.+.....-|.++.+.
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~ 225 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 225 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTT
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHH
Confidence 455667776653 4578999999999999998888777654332 2 34445555556555443
No 377
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.03 E-value=0.72 Score=52.84 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhc-----CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 393 ~sQ~~AV~~aL~-----~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
+...+.+...+. .++++|+||+|.|||+.+.+++..
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 455666777764 357899999999999998877654
No 378
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=84.92 E-value=0.74 Score=45.61 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+++..+-.|+||||+++.++..|.+.+ +||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g--~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG--ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS--CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC--CEEEE
Confidence 456678899999999999998888765 88775
No 379
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=84.73 E-value=1.2 Score=48.87 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHHhC
Q 004009 395 QVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQG 433 (779)
Q Consensus 395 Q~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~ 433 (779)
-.+||...+. ..-.+|.||||||||+++..++.++.+..
T Consensus 162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 4466666543 34579999999999999988888876543
No 380
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.54 E-value=0.53 Score=46.67 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.++.+|.||.|+|||+++-++.+.|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999877766554
No 381
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.49 E-value=1.3 Score=50.50 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCChHHHHHHHH-HHHHHHhCCCcEEEEcC
Q 004009 405 RPISLIQGPPGTGKTVTSAAI-VYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~i-I~~L~~~~~~rILV~Ap 442 (779)
..+++|.||+|+||||.+..+ +.-+...+.+.|.+...
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 468999999999999998876 34555545556776654
No 382
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.48 E-value=0.45 Score=47.57 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
....+|.||+|+|||+++.+++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999998777654
No 383
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.47 E-value=0.87 Score=44.90 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 004009 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (779)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (779)
+.|.+.++..+. ....+|.|.+|+|||+++..++..+..
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 344444444432 245678899999999998888876543
No 384
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.42 E-value=1.3 Score=44.85 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=30.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHH-hCCCcEEE-E-cCcHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAK-QGQGQVLV-C-APSNVAVDQLA 451 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~-~~~~rILV-~-ApSN~AVD~L~ 451 (779)
.+..|.|++|+||||.+..+...|-. .+. ++.+ + -|....+-+++
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~-~v~~~treP~~t~~g~~i 69 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGV-NNVVLTREPGGTLLNESV 69 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCG-GGEEEEESSCSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCc-eeeEeeeCCCCChHHHHH
Confidence 36778999999999998888887766 554 5555 3 44443333333
No 385
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.37 E-value=0.57 Score=60.46 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=34.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD 448 (779)
..+++|.||||+|||+.+..++....+.+. ++++.+.-...-.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~-~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDP 425 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEECTTSCCCH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEccCchHH
Confidence 458999999999999999999988887654 8888876554433
No 386
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.37 E-value=0.63 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
..+.+|.||+|+||||++..++.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 56889999999999997766553
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.30 E-value=0.51 Score=46.69 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=16.5
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (779)
+..|.|++|+||||++..+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56899999999999766553
No 388
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.18 E-value=0.62 Score=49.50 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
...+.|.||+|+||||.+..+...+ .++|++.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~ 157 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSF 157 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH----TCEEECG
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc----CceEEEE
Confidence 4588999999999999877766554 3577543
No 389
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=84.16 E-value=0.63 Score=50.93 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=29.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
.+.++.|..|+|||++++.++..+...+. |||++..
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~-~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGK-RVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCC-CeEEEeC
Confidence 35688999999999999999999888765 7766654
No 390
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.03 E-value=0.82 Score=59.02 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~A 446 (779)
..+++|.||||+|||+.+..++..+.+.+. +|++.+.-...
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~-~VlyiS~Ees~ 772 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHAL 772 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEECTTSCC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCC-CeEEEeccchH
Confidence 358999999999999999999988887654 88887765543
No 391
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.02 E-value=0.42 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=14.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI 426 (779)
..++.|.||+|+||||++..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999876655
No 392
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=83.95 E-value=0.75 Score=46.03 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
+.+..+-.|+|||++++.++..|.+..+.|||++=
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 45667779999999999999998877234888773
No 393
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=83.80 E-value=1.3 Score=46.36 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=26.4
Q ss_pred CeEEE-EcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLI-QGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LI-qGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
...+| .+-||.|||++++.++..+.+.+. |||++
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~-rVLLI 127 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNK-RVLLI 127 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCC-CEEEE
Confidence 34444 556999999999999988887654 88777
No 394
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.39 E-value=0.54 Score=49.04 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=17.1
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (779)
+..|.|||||||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999877665
No 395
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=83.35 E-value=0.57 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (779)
.-|.||||+||||.+..++..+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 3589999999999877666543
No 396
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.31 E-value=0.57 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.||+|+|||+++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 368899999999999887777654
No 397
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.22 E-value=0.55 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..++.|.||||+|||+.+..++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999888777654
No 398
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.14 E-value=0.43 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
..+.+|.||||+||||++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999998766553
No 399
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.68 E-value=0.77 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
....|.|+||+||||++..+...
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999987665543
No 400
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.67 E-value=0.76 Score=46.58 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=18.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+..|.||.|+||||++..+...+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999877655443
No 401
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=82.66 E-value=0.78 Score=46.74 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+++..+-.|+|||++++.++..|.+.+. |||++
T Consensus 9 I~v~s~kGGvGKTt~a~~LA~~la~~g~-~Vlli 41 (257)
T 1wcv_1 9 IALANQKGGVGKTTTAINLAAYLARLGK-RVLLV 41 (257)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCC-CEEEE
Confidence 3444578899999999999999988764 88886
No 402
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.60 E-value=0.7 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=18.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
.+..|.||+|+||||++..+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999998766653
No 403
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.39 E-value=2 Score=42.28 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=25.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+..|-|+.|+||||.+..+...|.+.+. +|+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~-~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK-KVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEE
Confidence 3468899999999998888877777665 55554
No 404
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.21 E-value=0.78 Score=45.17 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
..++.|.||.|+||||++..+...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 568899999999999987666543
No 405
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.20 E-value=0.79 Score=48.24 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.+..|.||+|+||||++..+...+-
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3577999999999998776665554
No 406
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.11 E-value=0.5 Score=56.91 Aligned_cols=21 Identities=48% Similarity=0.768 Sum_probs=17.0
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (779)
...||.||||||||+++..+.
T Consensus 239 ~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 458999999999998765554
No 407
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.07 E-value=0.42 Score=57.59 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=18.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
...|+.||||||||+++..+...+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999776666543
No 408
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.02 E-value=0.77 Score=45.86 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (779)
..++.|.||.|+||||++..+...+ + +.|.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~---p-G~i~~ 53 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF---P-NYFYF 53 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS---T-TTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC---C-CcEEE
Confidence 4588999999999999877666533 2 45655
No 409
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.02 E-value=1.1 Score=48.76 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
+.+..|-.|+|||++++.++..|.+.+. |||++-
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~-rVlliD 179 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGK-KVFYLN 179 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTC-CEEEEE
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 4556679999999999999999988765 888775
No 410
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=81.80 E-value=0.79 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+|.||||+|||+++..+...+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999999877666544
No 411
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.77 E-value=0.72 Score=45.48 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
-+..|.|+||+|||+++..+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999997665543
No 412
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.70 E-value=0.83 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.+|.||+|+||||.+..+..+|
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999888777665
No 413
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=81.57 E-value=0.75 Score=49.80 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+++..+-.|+||||+++.++..|.+.+. |||++
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~-rVLlI 36 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGK-RVLYV 36 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCC-cEEEE
Confidence 3455688999999999999999887654 88887
No 414
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.47 E-value=0.59 Score=49.94 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.++.+|.||+|+|||+++..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578899999999999887776543
No 415
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.22 E-value=0.54 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+.+|.||+|||||+++..++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999987776643
No 416
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.12 E-value=0.69 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+.+|.||+|+|||+++..++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46789999999999988777654
No 417
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=81.07 E-value=1.1 Score=46.57 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+++..+-.|+|||++++.++..|.+.+. |||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~G~-~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYGGA-KVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCC-cEEEE
Confidence 4455678899999999999999988765 78775
No 418
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=81.00 E-value=1.3 Score=48.34 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhhc--------C---CeEEEEcCCCChHHHHHHHHHHHHHH-----hCCCcEEEE
Q 004009 391 LNASQVFAVKSVLQ--------R---PISLIQGPPGTGKTVTSAAIVYHMAK-----QGQGQVLVC 440 (779)
Q Consensus 391 LN~sQ~~AV~~aL~--------~---~l~LIqGPPGTGKT~tla~iI~~L~~-----~~~~rILV~ 440 (779)
++.+|...+...+. . -++++.|-.|+||||+++.++..|.. ..+.|||++
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 46778887776642 1 14566789999999999999998885 223488776
No 419
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=80.98 E-value=0.85 Score=46.58 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+.+..+-.|+||||+++.+...|. .+ .|||++
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~g-~~Vlli 61 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-KN-NKVLLI 61 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-TT-SCEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-CC-CCEEEE
Confidence 455678899999999999999888 65 588776
No 420
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.78 E-value=0.74 Score=46.44 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (779)
+.+|.|++|+||||.+..+...+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 56799999999999877666543
No 421
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.73 E-value=1.1 Score=58.60 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~ 445 (779)
..+++|.||||+|||+.+..++....+.+ .++++.+.-..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G-~~vlyis~E~s 422 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHA 422 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEcCCC
Confidence 45899999999999999999998887654 47777766543
No 422
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=80.58 E-value=0.95 Score=48.12 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.++.|.||+|+||||++..+...+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 367899999999999876555433
No 423
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=80.50 E-value=0.91 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+.++.|+||+||||++..++..|
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999988887665
No 424
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=80.42 E-value=0.96 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
..++.|.||.|+||||++..+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46889999999999998766554
No 425
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=80.06 E-value=0.98 Score=47.68 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=23.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHH--hCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAK--QGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~--~~~~rILV~ 440 (779)
+..|.||+|+||||++..+... +. -..+.|.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~-l~~~~~~G~i~vi 116 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL-LSRWPEHRRVELI 116 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH-HTTSTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HhhCCCCCeEEEE
Confidence 6779999999999987665543 33 223467663
No 426
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=79.93 E-value=0.91 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
++.+|.||+|+|||+++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 467899999999999888877654
No 427
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.55 E-value=1.2 Score=59.96 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=21.4
Q ss_pred HHHhhc-CCeEEEEcCCCChHHHHHHHHHH
Q 004009 399 VKSVLQ-RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 399 V~~aL~-~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
+..++. ....|+.||||||||+++..++.
T Consensus 1260 l~~~l~~~~~vLL~GPpGtGKT~la~~~l~ 1289 (2695)
T 4akg_A 1260 FYDLLNSKRGIILCGPPGSGKTMIMNNALR 1289 (2695)
T ss_dssp HHHHHHHTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECCCCCCHHHHHHHHHh
Confidence 344443 56789999999999998755543
No 428
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=79.11 E-value=2.6 Score=41.84 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE-cCcHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSNVAVDQLAEK 453 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~-ApSN~AVD~L~er 453 (779)
+..|-|+.|+||||.+..+...|. .+ .+++.+ =|+....-+...+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~-~~-~~v~~~~eP~~t~~g~~ir~ 49 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV-KD-YDVIMTREPGGVPTGEEIRK 49 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-TT-SCEEEEESSTTCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-CC-CCEEEeeCCCCChHHHHHHH
Confidence 567899999999998877776663 33 355554 3444333333333
No 429
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=78.97 E-value=1.9 Score=45.84 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
..+..|.|==|.|||||.+.+...|.+.+. |||++
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk-kVllI 82 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQI 82 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCC-eEEEE
Confidence 457788899999999999999999998876 88887
No 430
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=78.75 E-value=0.93 Score=43.83 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHh
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (779)
..+.|.||.|+||||++..++..+-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 467899999999999887777665443
No 431
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=78.32 E-value=1.1 Score=43.72 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (779)
-.+|.|++|+|||+++.+++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999998877764
No 432
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.28 E-value=1.6 Score=47.12 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=30.8
Q ss_pred HHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcH
Q 004009 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (779)
Q Consensus 396 ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (779)
..||...+. .....|.||+|+||||++..++..+ +.....|.++....
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGERG 109 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCCH
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEecccH
Confidence 356766653 4588999999999999976666542 22222455555443
No 433
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=78.06 E-value=1.7 Score=48.88 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhC-CCcE-EEEcCcHHHHHHHHHHHHhc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQV-LVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~~rI-LV~ApSN~AVD~L~erL~~~ 457 (779)
..-.+|.||||+|||+.+..++....... .-.| ..+..-..-+.++.+.+...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~ 205 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDS 205 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhc
Confidence 46789999999999999999888776542 2122 33445555666666666543
No 434
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=77.59 E-value=1.3 Score=47.46 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.++.+|.||.|+|||+.+-++...+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999877766554
No 435
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=77.49 E-value=2 Score=49.53 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
..+.++.|.+|+|||++++.+...+.+.+. +||++
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~-~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGF-DVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCC-cEEEE
Confidence 347788999999999999999999988765 88776
No 436
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.25 E-value=1 Score=47.88 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=23.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcC
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (779)
++++|.|+-|+||||++..+.... ...||.|+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~---~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ---HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC---CCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc---CCCcEEEEEe
Confidence 578999999999999876655432 2335555544
No 437
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=77.22 E-value=2.1 Score=49.99 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHh---hcCCeEEEEcCCCChHHHHHHHHHHHHHHhC
Q 004009 391 LNASQVFAVKSV---LQRPISLIQGPPGTGKTVTSAAIVYHMAKQG 433 (779)
Q Consensus 391 LN~sQ~~AV~~a---L~~~l~LIqGPPGTGKT~tla~iI~~L~~~~ 433 (779)
.+..++.+...- ....+.+|.|+||+||||++..+...|...+
T Consensus 35 v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G 80 (630)
T 1x6v_B 35 VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHG 80 (630)
T ss_dssp CCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 456666654321 0123578999999999999888877775544
No 438
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.06 E-value=0.81 Score=48.08 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=17.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.+..|.||+|+||||++..+...+-
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999998877765543
No 439
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=76.97 E-value=1.9 Score=50.98 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh----cCCeEEEecc
Q 004009 393 ASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA----TGLKVVRLCA 466 (779)
Q Consensus 393 ~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~----~~l~vvRl~~ 466 (779)
+-|.-...... .+- +.+=-.|+|||.+++-.++ |-...+..|.|+|++..-+..-++-+.. .|+.+.-+.+
T Consensus 78 dvQligg~~L~-~G~-iaEM~TGEGKTLva~lp~~-lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 78 DVQVMGGIALH-EGK-VAEMKTGEGKTLAATMPIY-LNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp HHHHHHHHHHH-TTC-EEECCTTSCHHHHTHHHHH-HHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHHh-CCC-hhhccCCCCccHHHHHHHH-HHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 45665544333 332 6678899999998654443 2233345899999999877666655543 3676655443
No 440
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=76.79 E-value=1.4 Score=47.89 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.++++|.||.|+|||+.+-.+.+.+.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999998866665554
No 441
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=76.34 E-value=2.1 Score=45.15 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCeEEEEcCCCChHHHHHHHHH
Q 004009 395 QVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 395 Q~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI 426 (779)
-.+.+...+...+..|.||+|+||||++-.+.
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 34556666667889999999999999887766
No 442
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.33 E-value=1.4 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
..+++|.||.|+||||++..++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999988776643
No 443
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=76.10 E-value=0.55 Score=48.13 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=18.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
.+.+|.|++|+||||.+..+...
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999987655543
No 444
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.07 E-value=2.1 Score=37.61 Aligned_cols=25 Identities=24% Similarity=0.836 Sum_probs=19.9
Q ss_pred ccccccCCC-CCCceEEcCCCccCeeeeC
Q 004009 143 HACRYCGVS-NPACVVRCNVPSCRKWFCN 170 (779)
Q Consensus 143 ~~c~ycg~~-~~~~~~~c~~~~c~kwfcn 170 (779)
-.| +||.. +..-+|.|.. |++||=-
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~--C~~w~H~ 54 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDK--CSVWQHI 54 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTT--TCBEEET
T ss_pred EEe-ECCCccCCCcEEEcCC--CCCcCcC
Confidence 468 78875 4678999999 9999943
No 445
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.07 E-value=1.5 Score=41.75 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.++.|.||-|+||||.+..++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 478899999999999887777655
No 446
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=75.91 E-value=1.1 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (779)
...++|.||.|+||||++..++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999987766643
No 447
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=75.74 E-value=1.5 Score=40.11 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.8
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|++|+|||+.+..++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5799999999999766554
No 448
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=75.66 E-value=1.6 Score=43.17 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
..+..|.||+|||||++...+...|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4678899999999999876666543
No 449
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=75.61 E-value=2.2 Score=46.37 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=22.0
Q ss_pred HHHHhhcCCeEEEEcCCCChHHHHHHHHH
Q 004009 398 AVKSVLQRPISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 398 AV~~aL~~~l~LIqGPPGTGKT~tla~iI 426 (779)
.+...+....+.|.||+|+||||++-.++
T Consensus 208 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 208 PLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 34444556789999999999999775554
No 450
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=75.21 E-value=1.5 Score=42.32 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.7
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.||+|+|||+.+..++
T Consensus 8 v~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 5799999999999765554
No 451
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=75.07 E-value=1.6 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
..++.|.||+||||++..+...+-
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578899999999999888776654
No 452
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=74.99 E-value=2.2 Score=44.80 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCeEEEEcCCCChHHHHHHHHH
Q 004009 396 VFAVKSVLQRPISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 396 ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI 426 (779)
.+.+...+...+..|.||+|+||||++-.+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 3444555667889999999999998765554
No 453
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=74.91 E-value=1.6 Score=42.56 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=17.2
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (779)
.-.+|.|+||+|||+.+..++
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999776554
No 454
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=74.19 E-value=1.9 Score=47.68 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhhc-CCeEEEEcCCCChHHHHHHHHHH
Q 004009 392 NASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 392 N~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~ 427 (779)
+...++++..+.. .+.+.|.||+|+||||++-.+.-
T Consensus 55 ~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 55 NSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred chhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3445566666655 34778999999999998766553
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=74.17 E-value=1.6 Score=42.05 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.2
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (779)
..+|.|++|+|||+.+..++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 36799999999999766554
No 456
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=74.02 E-value=4.3 Score=45.68 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCc--EEEEcCcHHHHHHHHHHHHhcC
Q 004009 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ--VLVCAPSNVAVDQLAEKISATG 458 (779)
Q Consensus 396 ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~r--ILV~ApSN~AVD~L~erL~~~~ 458 (779)
.+||...+. ..=.+|.||+|+|||+++..++.+..+....- +..|..-..-|.++.+.+...+
T Consensus 141 ir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~ 208 (482)
T 2ck3_D 141 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 208 (482)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHT
T ss_pred eEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhcc
Confidence 356665543 34679999999999999999998765542222 3445667777788888876653
No 457
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=73.67 E-value=2.9 Score=47.91 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
+.++.|+||+||||++..+...+-..+ .++.++.
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G-~~~~~ld 407 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARG-RKVTLLD 407 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEC
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcC-CeEEEEC
Confidence 567899999999998877776665554 3555553
No 458
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=73.66 E-value=3 Score=48.14 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
+.+|.|+||+||||++..+...|-..+..++.++
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l 431 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 5678999999999987777766655442344444
No 459
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=73.66 E-value=1.8 Score=39.75 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.8
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999776654
No 460
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=73.42 E-value=1.9 Score=39.49 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=15.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999765544
No 461
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=73.34 E-value=1.3 Score=48.53 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHhhc---------C--CeEEEEcCCCChHHHHHHHHHHHHH------HhCCCcEEEE
Q 004009 391 LNASQVFAVKSVLQ---------R--PISLIQGPPGTGKTVTSAAIVYHMA------KQGQGQVLVC 440 (779)
Q Consensus 391 LN~sQ~~AV~~aL~---------~--~l~LIqGPPGTGKT~tla~iI~~L~------~~~~~rILV~ 440 (779)
++.+|...+..... . -++++.|-.|+||||+++.++..|. +.+ .|||++
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g-~rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHD-LRILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGC-CCEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCC-CeEEEE
Confidence 57788888876521 1 2566779999999999999998887 344 488776
No 462
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=73.24 E-value=1.9 Score=40.29 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.2
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (779)
..+|.|+||+|||+.+..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999766554
No 463
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=72.77 E-value=1.9 Score=39.29 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|++|+|||+.+..++
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999765544
No 464
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=72.65 E-value=1.9 Score=41.00 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=16.9
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (779)
.-.+|.|++|+|||+.+..++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 357899999999999766554
No 465
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=72.45 E-value=3.5 Score=41.61 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=27.3
Q ss_pred eEEEEcC-CCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 407 ISLIQGP-PGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 407 l~LIqGP-PGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
..+|.|. +|+|||++.+.++..|.+++. +|...=
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~-~V~~~K 40 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNI-KSLCLK 40 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCC-eeEEec
Confidence 3578887 999999999999998888764 666643
No 466
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=71.99 E-value=3.6 Score=46.48 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=41.3
Q ss_pred HHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHHhCCC-c-EEEEcCcHHHHHHHHHHHHhc
Q 004009 397 FAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG-Q-VLVCAPSNVAVDQLAEKISAT 457 (779)
Q Consensus 397 ~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~-r-ILV~ApSN~AVD~L~erL~~~ 457 (779)
+||...+. ..=..|.||+|+|||+++.+++.+..+.... . +..|..-..-+.++.+.+...
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 34544432 3457999999999999999999887654222 2 234455666777777777665
No 467
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=71.94 E-value=2.6 Score=48.41 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=21.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEE
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL 438 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rIL 438 (779)
.+..|.|++|+||||++..+...+-..+..+|.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 467899999999998766655544322222454
No 468
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=71.89 E-value=2.1 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.7
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999766553
No 469
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=71.82 E-value=2 Score=39.50 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999765554
No 470
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.70 E-value=2.2 Score=39.24 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|++|+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999765554
No 471
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=71.54 E-value=2.2 Score=43.51 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=22.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
.++.|.||.|+||||.+..+. -++.-..+.|.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA-GIVKPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEEC
Confidence 578899999999999765544 3333223466653
No 472
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=71.43 E-value=2.2 Score=39.82 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=15.7
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|++|+|||+.+..++
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765544
No 473
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=71.10 E-value=2.3 Score=38.91 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.5
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|++|+|||+.+..++
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765544
No 474
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=70.84 E-value=4.9 Score=41.05 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=31.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHHHHHh
Q 004009 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (779)
+..|.|+|||||||++..+..+ . .+-++++.......+.+.+..
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~---~---g~~~~~~~~~~~~~~~~~~g~ 46 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN---Y---SAVKYQLAGPIKDALAYAWGV 46 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---S---CEEECCTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh---c---CCeEEecChHHHHHHHHHccc
Confidence 3568999999999987554432 1 244588888888888877653
No 475
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=70.75 E-value=2.2 Score=42.82 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
..++.|.||.|+||||.+..+. -++.-..+.|.+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILG-LLDAPTEGKVFLE 64 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEEC
Confidence 4688999999999998765443 3333223466664
No 476
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=70.74 E-value=2.3 Score=39.11 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.5
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+-.++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765544
No 477
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=70.48 E-value=2.4 Score=39.05 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|++|+|||+.+..++
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999766553
No 478
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=70.35 E-value=2.4 Score=39.33 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=15.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+-.++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 5799999999999765443
No 479
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.17 E-value=2.4 Score=42.93 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
..++.|.||.|+||||.+..+.. ++.-..+.|.+-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~ 65 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVAIK 65 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT-CSEEEEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhc-CCCCCCceEEEC
Confidence 46889999999999997655442 222223456553
No 480
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=69.94 E-value=2.5 Score=38.81 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.5
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765544
No 481
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=69.88 E-value=2.5 Score=39.00 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=14.9
Q ss_pred EEEEcCCCChHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAI 425 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~i 425 (779)
.+|.|+||+|||+.+..+
T Consensus 5 i~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999976554
No 482
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=69.82 E-value=3.8 Score=46.72 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=23.1
Q ss_pred HHHHHHHHhhc------CCeEEEEcCCCChHHHHHHHHH
Q 004009 394 SQVFAVKSVLQ------RPISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 394 sQ~~AV~~aL~------~~l~LIqGPPGTGKT~tla~iI 426 (779)
...+.+...|. ..+..|.|++|.|||+.+..+.
T Consensus 135 ~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 135 YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 44555555552 2467899999999999766555
No 483
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=69.78 E-value=2.5 Score=42.34 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
..++.|.||.|+||||.+..+. -+++-..+.|.+-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIS-TYLKPLKGEIIYNG 70 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECC
Confidence 4688999999999999765543 33332234676643
No 484
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=69.63 E-value=2.4 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVY 427 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (779)
....|.||+|+||||.+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999997765554
No 485
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=69.53 E-value=2.3 Score=40.38 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.3
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (779)
.-.+|.|++|+|||+.+..++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 447899999999999876655
No 486
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=69.52 E-value=2.6 Score=39.24 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (779)
.-.+|.|+||+|||+.+..++
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999766553
No 487
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=69.43 E-value=2.5 Score=38.91 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999765543
No 488
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=69.42 E-value=2.8 Score=42.23 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=19.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 004009 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (779)
.+..|.|++|||||++...+...|
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 367899999999999876666544
No 489
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=69.39 E-value=2.6 Score=42.66 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEc
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (779)
..++.|.||.|+||||.+..+. -++.-..+.|.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g 66 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG-CLDKPTEGEVYIDN 66 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEECC
Confidence 4688999999999998655433 33332234676643
No 490
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=69.26 E-value=2.6 Score=38.59 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765554
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=69.13 E-value=2.2 Score=40.62 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=15.7
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5799999999999766554
No 492
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=68.83 E-value=2.6 Score=39.16 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|++|+|||+.+-.++
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999766554
No 493
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=68.68 E-value=3.7 Score=45.74 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHHhhc---CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHH
Q 004009 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLA 451 (779)
Q Consensus 396 ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~ 451 (779)
..|+...+. .....|.||.|+||||++..++.. .......|.++.....-+..+.
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGERGREVKDFI 202 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESCCHHHHHHHH
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEeceecHHHHHHH
Confidence 346666643 458899999999999986655543 3322335666665443444443
No 494
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=68.66 E-value=2.9 Score=42.73 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH-HHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHM-AKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L-~~~~~~rILV~ 440 (779)
..++.|.||.|+||||.+..+.-.+ ..-..+.|.+.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 4688999999999999766554321 21123466664
No 495
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=68.66 E-value=2.7 Score=45.51 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (779)
.++.+|.||.|+|||+++-++-+.+.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 57999999999999998877765444
No 496
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=68.41 E-value=2.7 Score=39.63 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.3
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 004009 407 ISLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (779)
-.+|.|++|+|||+.+..++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999776554
No 497
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=68.32 E-value=2.8 Score=39.05 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=15.5
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIV 426 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (779)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999765544
No 498
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=67.87 E-value=3 Score=43.25 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 004009 408 SLIQGPPGTGKTVTSAAIVYHM 429 (779)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (779)
..|.||.|+||||++-.+...+
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999887766543
No 499
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=67.76 E-value=2.9 Score=42.38 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
..++.|.||.|+||||.+..+. -++.-..+.|.+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFN 66 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEEC
Confidence 4588999999999999765544 3333223467664
No 500
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=67.71 E-value=2.9 Score=43.09 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhCCCcEEEE
Q 004009 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (779)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (779)
..++.|.||.|+||||.+..+. -++.-..+.|.+-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVN 66 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEEC
Confidence 4688999999999999766544 3333223466664
Done!