Query 004010
Match_columns 779
No_of_seqs 547 out of 3133
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 15:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.1E-53 2.5E-58 460.5 30.2 305 106-588 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 3.3E-49 7.2E-54 441.8 24.1 302 115-628 294-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 2.1E-48 4.5E-53 410.0 24.1 270 129-623 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 5.4E-48 1.2E-52 403.9 24.5 244 126-591 1-254 (255)
5 cd07497 Peptidases_S8_14 Pepti 100.0 7.4E-48 1.6E-52 411.8 25.4 287 132-587 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 6.8E-47 1.5E-51 415.3 28.6 313 125-623 2-346 (346)
7 cd07489 Peptidases_S8_5 Peptid 100.0 3.3E-46 7.2E-51 403.5 27.7 296 123-627 3-302 (312)
8 cd07478 Peptidases_S8_CspA-lik 100.0 9.7E-46 2.1E-50 415.0 28.9 406 130-614 1-455 (455)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.2E-45 2.7E-50 387.9 24.9 248 125-592 2-254 (267)
10 cd05561 Peptidases_S8_4 Peptid 100.0 5.4E-45 1.2E-49 377.8 23.7 235 135-614 1-239 (239)
11 cd07483 Peptidases_S8_Subtilis 100.0 5.7E-45 1.2E-49 388.8 24.5 275 133-588 1-291 (291)
12 cd07474 Peptidases_S8_subtilis 100.0 2.1E-44 4.5E-49 386.9 28.0 291 132-621 1-295 (295)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.3E-43 2.8E-48 373.6 24.9 246 134-588 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 1.9E-43 4.2E-48 372.8 25.3 247 132-588 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 9.4E-43 2E-47 379.0 27.6 221 216-590 182-412 (412)
16 KOG1153 Subtilisin-related pro 100.0 5.3E-44 1.1E-48 372.6 16.8 323 34-588 79-461 (501)
17 cd07485 Peptidases_S8_Fervidol 100.0 6.9E-43 1.5E-47 370.4 24.6 263 125-586 2-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 2.5E-42 5.4E-47 364.8 25.6 258 132-588 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.8E-41 4E-46 356.2 24.8 233 125-589 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 2E-41 4.2E-46 357.0 24.9 241 123-590 19-259 (260)
21 cd04847 Peptidases_S8_Subtilis 100.0 7.3E-42 1.6E-46 366.0 20.7 233 215-588 34-291 (291)
22 cd07490 Peptidases_S8_6 Peptid 100.0 4E-41 8.6E-46 353.5 24.7 253 134-588 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 6.1E-41 1.3E-45 357.8 25.9 207 214-586 66-285 (285)
24 cd07494 Peptidases_S8_10 Pepti 100.0 4.2E-41 9.1E-46 358.9 23.6 254 122-591 10-286 (298)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 9.7E-41 2.1E-45 358.1 25.8 277 128-588 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 1.4E-40 3.1E-45 346.7 22.4 207 214-586 35-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 2.5E-40 5.5E-45 354.8 23.8 268 127-619 2-296 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 3E-40 6.5E-45 348.4 22.1 247 123-588 5-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 8.9E-40 1.9E-44 344.3 25.5 250 133-588 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 1.4E-39 3.1E-44 336.3 24.0 227 134-586 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 7.7E-40 1.7E-44 339.8 19.8 159 132-348 2-169 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 2.7E-39 5.8E-44 347.1 23.5 108 213-332 47-159 (294)
33 PF00082 Peptidase_S8: Subtila 100.0 4.3E-40 9.3E-45 351.0 16.2 277 136-623 1-282 (282)
34 cd04059 Peptidases_S8_Protein_ 100.0 5.3E-39 1.2E-43 345.3 20.1 250 123-588 29-297 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 1.9E-38 4.2E-43 326.2 23.2 222 134-588 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 1.5E-37 3.3E-42 328.4 21.9 246 131-588 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 2E-36 4.2E-41 323.3 24.2 350 35-623 49-465 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 2E-32 4.3E-37 283.3 16.1 195 215-586 33-246 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 1.5E-31 3.3E-36 298.0 19.7 240 218-623 309-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.1E-30 2.3E-35 270.6 24.1 197 214-586 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 5.5E-23 1.2E-27 236.2 23.7 251 123-589 130-398 (508)
42 KOG3526 Subtilisin-like propro 99.9 1.5E-22 3.2E-27 206.6 11.4 416 12-644 8-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 1.7E-17 3.7E-22 182.3 13.6 104 246-353 82-199 (361)
44 cd02120 PA_subtilisin_like PA_ 99.4 2.2E-12 4.8E-17 120.2 13.2 122 358-482 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.4 1.9E-12 4E-17 123.3 12.3 116 379-507 25-141 (143)
46 PF05922 Inhibitor_I9: Peptida 98.9 2.4E-09 5.3E-14 91.6 6.3 73 37-109 1-82 (82)
47 cd04816 PA_SaNapH_like PA_SaNa 98.9 2.8E-08 6.1E-13 91.9 12.6 99 380-481 17-120 (122)
48 cd04818 PA_subtilisin_1 PA_sub 98.8 1.3E-08 2.9E-13 93.5 9.6 90 392-482 24-117 (118)
49 PF02225 PA: PA domain; Inter 98.8 7.7E-09 1.7E-13 92.2 7.7 92 380-473 6-101 (101)
50 cd02122 PA_GRAIL_like PA _GRAI 98.8 2.5E-08 5.4E-13 93.7 10.0 89 394-482 43-137 (138)
51 cd02129 PA_hSPPL_like PA_hSPPL 98.8 2.8E-08 6.1E-13 90.2 9.8 91 380-475 20-114 (120)
52 cd02127 PA_hPAP21_like PA_hPAP 98.8 3.2E-08 6.9E-13 90.4 9.9 89 395-484 21-117 (118)
53 cd02124 PA_PoS1_like PA_PoS1_l 98.8 7.4E-08 1.6E-12 89.5 12.4 99 382-481 28-127 (129)
54 cd02130 PA_ScAPY_like PA_ScAPY 98.7 1.6E-07 3.5E-12 86.9 12.7 96 380-482 22-121 (122)
55 cd00538 PA PA: Protease-associ 98.7 8.1E-08 1.8E-12 89.2 9.3 86 396-481 31-124 (126)
56 cd02126 PA_EDEM3_like PA_EDEM3 98.7 8.7E-08 1.9E-12 88.9 9.1 86 395-481 27-124 (126)
57 cd02125 PA_VSR PA_VSR: Proteas 98.6 2.9E-07 6.3E-12 85.3 11.1 88 395-482 22-126 (127)
58 cd02132 PA_GO-like PA_GO-like: 98.6 1.8E-07 4E-12 88.3 9.4 84 395-481 48-137 (139)
59 cd04817 PA_VapT_like PA_VapT_l 98.6 2.2E-07 4.9E-12 86.8 9.5 74 403-476 50-134 (139)
60 cd04813 PA_1 PA_1: Protease-as 98.5 4.7E-07 1E-11 82.6 8.7 80 394-475 26-111 (117)
61 cd02123 PA_C_RZF_like PA_C-RZF 98.5 7E-07 1.5E-11 85.7 9.2 84 395-478 50-142 (153)
62 KOG3525 Subtilisin-like propro 98.4 1.6E-06 3.5E-11 96.6 11.8 159 122-333 22-189 (431)
63 cd04819 PA_2 PA_2: Protease-as 98.3 7.7E-06 1.7E-10 76.1 11.2 91 379-477 22-121 (127)
64 COG4934 Predicted protease [Po 98.2 1.5E-05 3.3E-10 95.6 15.3 97 247-347 288-395 (1174)
65 PF06280 DUF1034: Fn3-like dom 98.0 3.9E-05 8.5E-10 69.8 10.2 85 686-772 8-112 (112)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.6 0.00022 4.7E-09 67.0 8.4 78 404-481 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.4 0.00047 1E-08 67.5 7.3 71 405-475 51-155 (183)
68 cd04814 PA_M28_1 PA_M28_1: Pro 97.0 0.0016 3.4E-08 61.3 6.6 63 380-444 20-100 (142)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 96.8 0.0029 6.4E-08 59.1 6.5 64 380-445 22-97 (137)
70 cd04822 PA_M28_1_3 PA_M28_1_3: 96.8 0.013 2.8E-07 55.9 10.7 64 380-445 20-101 (151)
71 KOG2442 Uncharacterized conser 96.5 0.0076 1.7E-07 65.9 8.3 79 405-483 91-175 (541)
72 PF14874 PapD-like: Flagellar- 96.1 0.099 2.1E-06 46.4 12.0 94 666-775 8-101 (102)
73 cd02121 PA_GCPII_like PA_GCPII 95.8 0.018 3.9E-07 58.4 6.5 58 380-445 45-107 (220)
74 cd02131 PA_hNAALADL2_like PA_h 95.6 0.016 3.4E-07 54.6 4.4 40 406-445 37-76 (153)
75 KOG3920 Uncharacterized conser 95.1 0.028 6.2E-07 52.2 4.3 101 381-487 65-175 (193)
76 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.12 2.7E-06 43.4 7.9 57 686-743 5-62 (78)
77 KOG4628 Predicted E3 ubiquitin 94.3 0.13 2.8E-06 55.3 7.6 81 395-475 62-149 (348)
78 cd04821 PA_M28_1_2 PA_M28_1_2: 91.9 0.6 1.3E-05 44.9 7.5 63 380-444 22-103 (157)
79 PF11614 FixG_C: IG-like fold 90.2 3.1 6.7E-05 37.9 10.3 56 687-744 32-87 (118)
80 KOG1114 Tripeptidyl peptidase 78.5 1.4 3.1E-05 52.4 2.7 24 129-152 77-100 (1304)
81 COG1470 Predicted membrane pro 74.2 8.1 0.00018 43.0 6.8 64 686-752 397-461 (513)
82 PF06030 DUF916: Bacterial pro 73.6 46 0.00099 30.6 10.7 71 686-761 27-119 (121)
83 PF00345 PapD_N: Pili and flag 69.3 40 0.00086 30.7 9.5 53 687-741 15-73 (122)
84 PF00635 Motile_Sperm: MSP (Ma 69.2 18 0.0004 31.9 7.1 52 687-742 19-70 (109)
85 TIGR02745 ccoG_rdxA_fixG cytoc 67.3 21 0.00045 40.4 8.4 55 687-743 347-401 (434)
86 PF07610 DUF1573: Protein of u 54.9 47 0.001 24.5 5.7 44 692-739 2-45 (45)
87 PF07705 CARDB: CARDB; InterP 51.5 90 0.002 26.6 8.2 53 686-742 19-72 (101)
88 COG1470 Predicted membrane pro 47.0 1.9E+02 0.0042 32.6 11.2 57 686-744 284-346 (513)
89 PF07718 Coatamer_beta_C: Coat 43.5 2.1E+02 0.0046 26.9 9.4 69 687-762 70-139 (140)
90 PF00927 Transglut_C: Transglu 41.4 1.3E+02 0.0028 26.6 7.6 55 686-743 15-78 (107)
91 smart00635 BID_2 Bacterial Ig- 40.6 79 0.0017 26.4 5.8 40 716-764 4-43 (81)
92 PF02845 CUE: CUE domain; Int 36.5 35 0.00077 24.7 2.6 24 564-587 5-28 (42)
93 KOG2018 Predicted dinucleotide 32.0 55 0.0012 34.9 4.0 78 247-325 137-244 (430)
94 PF08260 Kinin: Insect kinin p 31.5 22 0.00047 16.4 0.4 6 500-505 3-8 (8)
95 PF08821 CGGC: CGGC domain; I 25.9 3.8E+02 0.0082 24.0 7.8 45 248-295 31-76 (107)
96 PRK15098 beta-D-glucoside gluc 25.9 1.5E+02 0.0032 36.4 7.0 53 686-742 667-728 (765)
97 PRK15019 CsdA-binding activato 25.0 67 0.0015 30.6 3.0 29 552-581 81-109 (147)
98 PLN03080 Probable beta-xylosid 24.2 1.9E+02 0.0042 35.5 7.4 52 687-741 685-744 (779)
99 PF12690 BsuPI: Intracellular 24.1 4.4E+02 0.0095 22.2 8.2 53 689-743 3-72 (82)
100 PF04255 DUF433: Protein of un 23.9 65 0.0014 25.1 2.2 38 547-584 11-54 (56)
101 TIGR03391 FeS_syn_CsdE cystein 23.7 74 0.0016 29.9 3.0 31 550-581 74-104 (138)
102 PRK13203 ureB urease subunit b 22.4 2.3E+02 0.005 25.1 5.4 52 686-738 18-82 (102)
103 cd00407 Urease_beta Urease bet 22.3 2.4E+02 0.0051 25.0 5.5 52 686-738 18-82 (101)
104 PF04744 Monooxygenase_B: Mono 22.2 1.1E+03 0.023 26.1 11.7 52 686-741 263-335 (381)
105 PF13940 Ldr_toxin: Toxin Ldr, 22.1 71 0.0015 22.0 1.8 13 555-567 14-26 (35)
106 PRK13202 ureB urease subunit b 21.8 2.5E+02 0.0055 24.9 5.6 50 688-738 21-83 (104)
107 PRK09296 cysteine desufuration 21.1 90 0.0019 29.4 3.0 30 551-581 70-99 (138)
108 smart00546 CUE Domain that may 20.4 1.4E+02 0.0031 21.6 3.3 25 563-587 5-29 (43)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-53 Score=460.49 Aligned_cols=305 Identities=61% Similarity=0.997 Sum_probs=262.7
Q ss_pred ecccccCCCcccCCccccC--CccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceee
Q 004010 106 RQLHTTRSPQFLGLRNQQG--LWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKII 183 (779)
Q Consensus 106 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kii 183 (779)
++++++++++|+++...+. +|..+.+|+||+|||||||||++||+|++....+++..|.+.|..+..+....||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688999999999987765 48889999999999999999999999999888999999999999999888888999999
Q ss_pred eeeeccccccccCCCCCCCCCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeec
Q 004010 184 GARFFSKGHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCW 263 (779)
Q Consensus 184 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 263 (779)
+.++|..++...... +.+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+++|+++
T Consensus 81 g~~~~~~~~~~~~~~--------~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 81 GARYFSDGYDAYGGF--------NSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred EEEEcccchhhccCc--------ccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 999998865543221 113445678899999999999999998877666777777889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCccccCCCceE
Q 004010 264 KNAGCFDSDILAAFDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIV 343 (779)
Q Consensus 264 ~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vi 343 (779)
....+..+++++||++|++++++|||||||.. ....+.+.+..+++.+.++|++||+||||+|+...+.++..||++
T Consensus 153 ~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~---~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 153 PDGGCFGSDILAAIDQAIADGVDVISYSIGGG---SPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred CCCCccHHHHHHHHHHHHHcCCCEEEeCCCCC---CCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 85368899999999999999999999999987 334566788888889999999999999999988888889999999
Q ss_pred EeccCccCcceeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchh
Q 004010 344 TVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRV 423 (779)
Q Consensus 344 tVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~ 423 (779)
+|||.+
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 998820
Q ss_pred hHHHHHHHcCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccC
Q 004010 424 AKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSA 503 (779)
Q Consensus 424 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs 503 (779)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCeEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHH
Q 004010 504 RGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAM 583 (779)
Q Consensus 504 ~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L 583 (779)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|
T Consensus 236 ----------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L 302 (307)
T cd04852 236 ----------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSAL 302 (307)
T ss_pred ----------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 467999999999999875311 1112223479999999999999999999999999999999999999
Q ss_pred Hhccc
Q 004010 584 MTTAS 588 (779)
Q Consensus 584 ~~TA~ 588 (779)
++||+
T Consensus 303 ~~tA~ 307 (307)
T cd04852 303 MTTAY 307 (307)
T ss_pred HHhcC
Confidence 99995
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.3e-49 Score=441.78 Aligned_cols=302 Identities=20% Similarity=0.188 Sum_probs=211.8
Q ss_pred cccCCccc--cCCcc--CCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccc
Q 004010 115 QFLGLRNQ--QGLWS--ESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSK 190 (779)
Q Consensus 115 ~~~g~~~~--~~~~~--~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~ 190 (779)
..|+++.+ +.+|+ .+..|+||+|||||||||++||+|.+.-... +....|. .+++. +|+..+ +...
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Gr----dgiDd--D~nG~v---dd~~ 363 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGR----KGIDD--DNNGNV---DDEY 363 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCc----ccccc--ccCCcc---cccc
Confidence 34666543 34555 3567999999999999999999998531000 0000000 00000 011110 0011
Q ss_pred cccccCCCCCCCCCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCH
Q 004010 191 GHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFD 270 (779)
Q Consensus 191 g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~ 270 (779)
||+.. .....|.|..||||||||||||...++.+ +.||||+|+|+++|+++..+.+..
T Consensus 364 G~nfV--------------d~~~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~ 421 (639)
T PTZ00262 364 GANFV--------------NNDGGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRL 421 (639)
T ss_pred ccccc--------------CCCCCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccH
Confidence 22221 12245688999999999999997644322 479999999999999988734788
Q ss_pred HHHHHHHHHhhhCCCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCc--------------cc
Q 004010 271 SDILAAFDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS--------------VT 336 (779)
Q Consensus 271 s~i~~ai~~A~~~gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~ 336 (779)
+++++||+||++.|++|||||||... +...+..++.+|.++|++||+||||+|....+ ++
T Consensus 422 sdI~~AI~yA~~~GA~VINmSlG~~~------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YP 495 (639)
T PTZ00262 422 GDMFKCFDYCISREAHMINGSFSFDE------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYP 495 (639)
T ss_pred HHHHHHHHHHHHCCCCEEEeccccCC------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCC
Confidence 99999999999999999999999762 23467788889999999999999999865321 11
Q ss_pred c----CCCceEEeccCccCcceeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccE
Q 004010 337 N----LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKI 412 (779)
Q Consensus 337 ~----~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gki 412 (779)
. ..|++|+|||...+..
T Consensus 496 aa~s~~~~nVIaVGAv~~d~~----------------------------------------------------------- 516 (639)
T PTZ00262 496 PILSKKLRNVITVSNLIKDKN----------------------------------------------------------- 516 (639)
T ss_pred hhhhccCCCEEEEeeccCCCC-----------------------------------------------------------
Confidence 1 2345566655221100
Q ss_pred EEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecc
Q 004010 413 VICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGI 492 (779)
Q Consensus 413 vl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~ 492 (779)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCC
Q 004010 493 KPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP 572 (779)
Q Consensus 493 ~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P 572 (779)
..-.++.||++|.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|
T Consensus 517 -~~~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P 575 (639)
T PTZ00262 517 -NQYSLSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINP 575 (639)
T ss_pred -CcccccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCC
Confidence 00023456677632 359999999999998765 799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCccC-CCcccccccCCCCcee
Q 004010 573 DWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFG-AGHVNLDRAMDPGLVY 628 (779)
Q Consensus 573 ~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G-~G~vn~~~Al~~glv~ 628 (779)
+|+++||+++|++||.++... +..+| .|+||+.+|++..+-+
T Consensus 576 ~LT~~qV~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 576 SLSYEEVIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CCCHHHHHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 999999999999999876321 11233 3899999999866644
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.1e-48 Score=410.00 Aligned_cols=270 Identities=29% Similarity=0.300 Sum_probs=202.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCC
Q 004010 129 SDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINE 208 (779)
Q Consensus 129 ~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~ 208 (779)
+++|+||+|+|||||||..||++.+...+.++..+. +..
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~-----------------------~~~------------------ 39 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVN-----------------------VLG------------------ 39 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCccee-----------------------ecc------------------
Confidence 478999999999999999999654332222211110 000
Q ss_pred ccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEE
Q 004010 209 TVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVI 288 (779)
Q Consensus 209 ~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVI 288 (779)
......|..||||||||||+ ||||+|+|+.+|+. ...+++++||+||++.|++||
T Consensus 40 --~~~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vi 94 (275)
T cd05562 40 --DLDGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG-----GGELDFAAAIRALAAAGADII 94 (275)
T ss_pred --ccCCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC-----CCHHHHHHHHHHHHHcCCCEE
Confidence 01234578899999999995 89999999998873 357899999999999999999
Q ss_pred EeccCCCCCCCCCC-CCCHHHHHHHHHhcC-CcEEEEccCCCCCCCC-ccccCCCceEEeccCccCcceeeEEEeCCCeE
Q 004010 289 SISIGGGDGISSPY-YLDPIAIGSYGAASR-GVFVSSSAGNDGPNGM-SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRR 365 (779)
Q Consensus 289 n~SlG~~~g~~~~~-~~d~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAst~d~~~~~~~~l~~g~~ 365 (779)
|||||.. ..++ ....+..++.++.++ |++||+||||+|+... ..+...|++|+|||.+.+.......
T Consensus 95 n~S~g~~---~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------- 164 (275)
T cd05562 95 VDDIGYL---NEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------- 164 (275)
T ss_pred Eeccccc---CCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-------
Confidence 9999986 3333 344677788888887 9999999999998643 4467889999999965432210000
Q ss_pred EEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004010 366 LSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (779)
Q Consensus 366 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (779)
|.. +
T Consensus 165 --------------------------------~~~----~---------------------------------------- 168 (275)
T cd05562 165 --------------------------------DPA----P---------------------------------------- 168 (275)
T ss_pred --------------------------------ccc----c----------------------------------------
Confidence 000 0
Q ss_pred CCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCC-c
Q 004010 446 GEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGV-N 524 (779)
Q Consensus 446 ~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~ 524 (779)
.......+.||++||+.. +.+||||+|||+ +
T Consensus 169 ----------------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~ 200 (275)
T cd05562 169 ----------------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVN 200 (275)
T ss_pred ----------------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCccc
Confidence 000013456788899865 789999999975 4
Q ss_pred EEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCC
Q 004010 525 ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGN 604 (779)
Q Consensus 525 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~ 604 (779)
+.+.+..+ .|..++|||||||||||++|||+|++|+|+++|||++|++||+++. .
T Consensus 201 ~~~~~~~~-------------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~ 255 (275)
T cd05562 201 GTVDGDGD-------------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------E 255 (275)
T ss_pred ccCCCcCC-------------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------C
Confidence 45544433 7999999999999999999999999999999999999999998863 2
Q ss_pred CCCCCccCCCcccccccCC
Q 004010 605 ASTPYDFGAGHVNLDRAMD 623 (779)
Q Consensus 605 ~~~~~~~G~G~vn~~~Al~ 623 (779)
+..+..||||+||+.+|++
T Consensus 256 ~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 256 PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred CCCCCCcCcCcccHHHHhh
Confidence 2345689999999999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.4e-48 Score=403.93 Aligned_cols=244 Identities=29% Similarity=0.440 Sum_probs=197.4
Q ss_pred ccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCC
Q 004010 126 WSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGG 205 (779)
Q Consensus 126 ~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~ 205 (779)
|+++++|+||+|||||||||.+||+|.+.. ...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC---------------
Confidence 889999999999999999999999996310 0001111
Q ss_pred CCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCC
Q 004010 206 INETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGV 285 (779)
Q Consensus 206 ~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gv 285 (779)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+......++++++|+||+++++
T Consensus 38 ------~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~ 100 (255)
T cd07479 38 ------EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKI 100 (255)
T ss_pred ------CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCC
Confidence 02345778999999999999742 1379999999999999987723667789999999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCc--cccCCCceEEeccCccCcceeeEEEeCCC
Q 004010 286 DVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS--VTNLAPWIVTVGAGTIDRNFPAEVRLGDG 363 (779)
Q Consensus 286 dVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgAst~d~~~~~~~~l~~g 363 (779)
||||||||... +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||...
T Consensus 101 ~Vin~S~G~~~-----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------- 162 (255)
T cd07479 101 DVLNLSIGGPD-----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------- 162 (255)
T ss_pred CEEEeeccCCC-----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------
Confidence 99999999862 234566677778889999999999999975433 4566778888887311
Q ss_pred eEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccC
Q 004010 364 RRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGI 443 (779)
Q Consensus 364 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 443 (779)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCC----CCCCCCCeEE
Q 004010 444 SNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGL----NPEILKPDLI 519 (779)
Q Consensus 444 ~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~ 519 (779)
.+.++.|||+|++.. ..+++||||.
T Consensus 163 ---------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~ 191 (255)
T cd07479 163 ---------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIV 191 (255)
T ss_pred ---------------------------------------------------CCccccccCCCCCcccccCCCCCcCccEE
Confidence 126788999997531 2377899999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccc
Q 004010 520 APGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP----DWSPAAIRSAMMTTASIVD 591 (779)
Q Consensus 520 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~~sp~~Ik~~L~~TA~~~~ 591 (779)
|||.+|+++.... .|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 192 apG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 192 TYGSGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ecCCCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 9999999886544 788999999999999999999999999 6999999999999999863
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-48 Score=411.75 Aligned_cols=287 Identities=31% Similarity=0.350 Sum_probs=190.6
Q ss_pred CCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccc
Q 004010 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (779)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (779)
|+||+|+|||||||++||+|.++... .|.. .|+ +..+ +..+++...+ .
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~------~~~g~d~~~~-------------~ 48 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAY------LLPGMDKWGG-------------F 48 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC---cCCC------ccCCcCCCCC-------------c
Confidence 79999999999999999999753110 0000 000 0001 1112221111 1
Q ss_pred cCCCCCCCCccchhhhhhcccccCCCcccccc-ccceeeeCCCCeEEEEEeecCCCCCCHHHHHH-------HHHHh--h
Q 004010 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYA-AGVAKGVAPKARLAVYKVCWKNAGCFDSDILA-------AFDAA--V 281 (779)
Q Consensus 212 ~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~-------ai~~A--~ 281 (779)
...+.|.+||||||||||||+.....+.+++. ...+.||||+|+|+.+|++.....+....+.+ +++|+ .
T Consensus 49 ~~~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 128 (311)
T cd07497 49 YVIMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTG 128 (311)
T ss_pred cCCCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhcc
Confidence 13467899999999999999865433332221 22458999999999999997542233333333 33443 3
Q ss_pred hCCCcEEEeccCCCCCCCCCCC-----CCHHHHHHHH-HhcCCcEEEEccCCCCCCCC--ccccCCCceEEeccCccCcc
Q 004010 282 NDGVDVISISIGGGDGISSPYY-----LDPIAIGSYG-AASRGVFVSSSAGNDGPNGM--SVTNLAPWIVTVGAGTIDRN 353 (779)
Q Consensus 282 ~~gvdVIn~SlG~~~g~~~~~~-----~d~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgAst~d~~ 353 (779)
++++||||||||... ..+. .+........ +.++||+||+||||+|+... +.+..++++|+|||++....
T Consensus 129 ~~~~~VIN~S~G~~~---~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~ 205 (311)
T cd07497 129 GPRVDVISNSWGISN---FAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDY 205 (311)
T ss_pred CCCceEEEecCCcCC---CCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcc
Confidence 689999999999862 2111 1223322222 24899999999999998643 45567899999999653211
Q ss_pred eeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcC
Q 004010 354 FPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAG 433 (779)
Q Consensus 354 ~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~G 433 (779)
.+.. ++.+
T Consensus 206 ~~~~-------------------------~~~~----------------------------------------------- 213 (311)
T cd07497 206 RPFY-------------------------LFGY----------------------------------------------- 213 (311)
T ss_pred cchh-------------------------hhcc-----------------------------------------------
Confidence 0000 0000
Q ss_pred ceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCC
Q 004010 434 GVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEI 513 (779)
Q Consensus 434 a~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~ 513 (779)
.....+.++.||||||+.+ ++
T Consensus 214 ---------------------------------------------------------~~~~~~~~~~fSs~Gp~~~--g~ 234 (311)
T cd07497 214 ---------------------------------------------------------LPGGSGDVVSWSSRGPSIA--GD 234 (311)
T ss_pred ---------------------------------------------------------ccCCCCCccccccCCCCcc--cC
Confidence 0012347899999999976 89
Q ss_pred CCCeEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004010 514 LKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP------DWSPAAIRSAMMTTA 587 (779)
Q Consensus 514 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~sp~~Ik~~L~~TA 587 (779)
+||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||.+|++||
T Consensus 235 ~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 235 PKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999999999876542100 011123699999999999999999999999886 589999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=6.8e-47 Score=415.26 Aligned_cols=313 Identities=30% Similarity=0.424 Sum_probs=231.9
Q ss_pred CccCCC-CCCCcEEEEEecCCCCCCCCcccCCCCCCCC-----cceeeeecccccCCccCCceeeeeeeccccccccCCC
Q 004010 125 LWSESD-YGSDVIIGVFDTGIWPERRSFSDLNIGSIPS-----KWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGS 198 (779)
Q Consensus 125 ~~~~~~-~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~ 198 (779)
+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+ ...+++.|++..++|..+...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc----
Confidence 688887 9999999999999999999998754332111 112222111 122467788888877763211
Q ss_pred CCCCCCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecC--CCCCCHHHHHHH
Q 004010 199 AGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWK--NAGCFDSDILAA 276 (779)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~s~i~~a 276 (779)
.....|..+|||||||||+|...+... ...+.||||+|+|+.+|+++. ...+....+++|
T Consensus 75 -------------~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~a 136 (346)
T cd07475 75 -------------ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKA 136 (346)
T ss_pred -------------cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHH
Confidence 112457899999999999998754221 123589999999999999974 324778889999
Q ss_pred HHHhhhCCCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCcc----------------ccCCC
Q 004010 277 FDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV----------------TNLAP 340 (779)
Q Consensus 277 i~~A~~~gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p 340 (779)
++++++.|++|||||||... ........+..++.++.++|++||+||||+|...... +...+
T Consensus 137 i~~a~~~g~~Vin~S~G~~~--~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTA--GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214 (346)
T ss_pred HHHHHHcCCCEEEECCCcCC--CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCC
Confidence 99999999999999999874 2224456777888889999999999999998654321 12233
Q ss_pred ceEEeccCccCcceeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCC
Q 004010 341 WIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS 420 (779)
Q Consensus 341 ~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~ 420 (779)
++|+||+...
T Consensus 215 ~~i~Vga~~~---------------------------------------------------------------------- 224 (346)
T cd07475 215 DVLTVASANK---------------------------------------------------------------------- 224 (346)
T ss_pred CceEEeeccc----------------------------------------------------------------------
Confidence 4444444210
Q ss_pred chhhHHHHHHHcCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCcccc
Q 004010 421 PRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVAS 500 (779)
Q Consensus 421 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~ 500 (779)
.......+.++.
T Consensus 225 --------------------------------------------------------------------~~~~~~~~~~~~ 236 (346)
T cd07475 225 --------------------------------------------------------------------KVPNPNGGQMSG 236 (346)
T ss_pred --------------------------------------------------------------------ccCCCCCCccCC
Confidence 000112347889
Q ss_pred ccCCCCCCCCCCCCCCeEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhh----CCCCCH
Q 004010 501 FSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSA----HPDWSP 576 (779)
Q Consensus 501 fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp 576 (779)
||+|||+.. .++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++
T Consensus 237 ~S~~G~~~~--~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~ 301 (346)
T cd07475 237 FSSWGPTPD--LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSG 301 (346)
T ss_pred CcCCCCCcc--cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 999999875 889999999999999987664 7899999999999999999999997 799998
Q ss_pred HH----HHHHHHhccccccCCCCCCCccCCCCCCCCCccCCCcccccccCC
Q 004010 577 AA----IRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMD 623 (779)
Q Consensus 577 ~~----Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 623 (779)
.+ ||.+|++||.+.... ......+.+.++|+|+||+.+|++
T Consensus 302 ~~~~~~ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 302 EELVDLVKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHHHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 77 788899999853211 122456777899999999999985
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-46 Score=403.51 Aligned_cols=296 Identities=35% Similarity=0.440 Sum_probs=229.0
Q ss_pred cCCccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCC
Q 004010 123 QGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPI 202 (779)
Q Consensus 123 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 202 (779)
+.+|+.+++|+||+|||||+|||++||+|.+.-.+ +.++.+.++|......
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~-------- 53 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD-------- 53 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc--------
Confidence 46899999999999999999999999999753111 1123333333321000
Q ss_pred CCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhh
Q 004010 203 GGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN 282 (779)
Q Consensus 203 ~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~ 282 (779)
..+...+...+.|..||||||||||+|...+ .| +.||||+|+|+.+|+++.........++++|++|++
T Consensus 54 --~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~ 122 (312)
T cd07489 54 --GTNPPVPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYE 122 (312)
T ss_pred --cccCCCCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 0001223345677899999999999998643 12 489999999999999987634677788999999999
Q ss_pred CCCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCC---ccccCCCceEEeccCccCcceeeEEE
Q 004010 283 DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVR 359 (779)
Q Consensus 283 ~gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAst~d~~~~~~~~ 359 (779)
++++|||||||... .+..+.+...+.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 123 ~~~~iIn~S~g~~~----~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------- 188 (312)
T cd07489 123 DGADVITASLGGPS----GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------- 188 (312)
T ss_pred cCCCEEEeCCCcCC----CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------
Confidence 99999999999872 234477777888899999999999999986542 3345667888887610
Q ss_pred eCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEE
Q 004010 360 LGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMIL 439 (779)
Q Consensus 360 l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 439 (779)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEE
Q 004010 440 ANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLI 519 (779)
Q Consensus 440 ~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 519 (779)
+.||++||+.. ...||||+
T Consensus 189 -----------------------------------------------------------~~~s~~g~~~~--~~~kpdv~ 207 (312)
T cd07489 189 -----------------------------------------------------------SYFSSWGPTNE--LYLKPDVA 207 (312)
T ss_pred -----------------------------------------------------------CCccCCCCCCC--CCcCccEE
Confidence 46899999976 78999999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhC-CCCCHHHHHHHHHhccccccCCCCCCC
Q 004010 520 APGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH-PDWSPAAIRSAMMTTASIVDNSNQPMT 598 (779)
Q Consensus 520 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~~sp~~Ik~~L~~TA~~~~~~~~~~~ 598 (779)
|||++|+++++.... .|..++|||||||+|||++|||+|++ |.+++.+||++|++||..+...+....
T Consensus 208 ApG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~ 276 (312)
T cd07489 208 APGGNILSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA 276 (312)
T ss_pred cCCCCEEEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc
Confidence 999999999887632 59999999999999999999999999 999999999999999998764332111
Q ss_pred ccCCCCCCCCCccCCCcccccccCCCCce
Q 004010 599 DEATGNASTPYDFGAGHVNLDRAMDPGLV 627 (779)
Q Consensus 599 ~~~~~~~~~~~~~G~G~vn~~~Al~~glv 627 (779)
. ....+..++|+|+||+.+|++..-.
T Consensus 277 ~---~~~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 277 L---PDLAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred c---cCCCCHhhcCcceeeHHHHhcCCcc
Confidence 1 1135667999999999999985433
No 8
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=9.7e-46 Score=414.97 Aligned_cols=406 Identities=27% Similarity=0.317 Sum_probs=232.7
Q ss_pred CCCCCcEEEEEecCCCCCCCCccc-CCCCCCCCcceeeeecccccCCccCCceeeeeeeccc-cccccCCCCCCCCCCCC
Q 004010 130 DYGSDVIIGVFDTGIWPERRSFSD-LNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSK-GHEAAGGSAGPIGGGIN 207 (779)
Q Consensus 130 ~~G~gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-g~~~~~~~~~~~~~~~~ 207 (779)
.+|+||+|||||||||+.||+|++ ++.+++...|++....+..- ....+...+.. ..+......
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~-------- 66 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASD-------- 66 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcC--------
Confidence 479999999999999999999996 56788999999877643211 11111111111 000000000
Q ss_pred CccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCC----------CCHHHHHHHH
Q 004010 208 ETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG----------CFDSDILAAF 277 (779)
Q Consensus 208 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g----------~~~s~i~~ai 277 (779)
.+.+.....|..||||||||||||+..++.. +.||||+|+|+++|++..... +..++++.||
T Consensus 67 ~p~~~~~~~D~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai 138 (455)
T cd07478 67 NPYDIVPSRDENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAI 138 (455)
T ss_pred CccccCcCCCCCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHH
Confidence 1233345678999999999999998754322 489999999999999988722 5688999999
Q ss_pred HHhhhC-----CCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcC-CcEEEEccCCCCCCCCccccC-----CCc--eEE
Q 004010 278 DAAVND-----GVDVISISIGGGDGISSPYYLDPIAIGSYGAASR-GVFVSSSAGNDGPNGMSVTNL-----APW--IVT 344 (779)
Q Consensus 278 ~~A~~~-----gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----~p~--vit 344 (779)
+|+++. .+.|||||||...| .....+.+..++..+.++ |++||+||||+|....+.... ... -+.
T Consensus 139 ~~~~~~a~~~~~p~VInlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~ 216 (455)
T cd07478 139 KYLYDKALELNKPLVINISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELN 216 (455)
T ss_pred HHHHHHHHHhCCCeEEEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEE
Confidence 999874 46799999998742 223456777777777666 999999999999754443321 000 122
Q ss_pred eccCccCcceeeEEEeCCCeEEEeEEeecCCC--C--------CCceEeEEecCCCCCcccccccC-CCCCCCcccccEE
Q 004010 345 VGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAP--L--------SEKMYPLIYPGKSGVLSASLCME-NSLDPNLVRGKIV 413 (779)
Q Consensus 345 VgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~--~--------~~~~~~~v~~~~~~~~~~~~C~~-~~~~~~~~~gkiv 413 (779)
|+... ..+.-++....-..+. ..+.++.. . ....+.+.+... ..|-. ...++..-...|.
T Consensus 217 v~~~~--~~~~~eiW~~~~d~~~-v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t------~i~v~y~~~~~~~g~~~i~ 287 (455)
T cd07478 217 VGEGE--KGFNLEIWGDFPDRFS-VSIISPSGESSGRINPGIGGSESYKFVFEGT------TVYVYYYLPEPYTGDQLIF 287 (455)
T ss_pred ECCCC--cceEEEEecCCCCEEE-EEEECCCCCccCccCcCCCcceeEEEEECCe------EEEEEEcCCCCCCCCeEEE
Confidence 22211 1111111111000000 00100000 0 000011111000 00000 0011111111122
Q ss_pred EEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecce-----
Q 004010 414 ICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGT----- 488 (779)
Q Consensus 414 l~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t----- 488 (779)
+... + ...|---+.+........ ....++|.-.+...+. .++.. ++..+++.+.+
T Consensus 288 i~~~----------~-~~~GiW~i~~~~~~~~~g---~~~~Wlp~~~~~~~~t----~f~~~--~~~~tit~Pa~~~~vi 347 (455)
T cd07478 288 IRFK----------N-IKPGIWKIRLTGVSITDG---RFDAWLPSRGLLSENT----RFLEP--DPYTTLTIPGTARSVI 347 (455)
T ss_pred EEcc----------C-CCccceEEEEEeccCCCc---eEEEEecCcCcCCCCC----EeecC--CCCceEecCCCCCCcE
Confidence 2100 0 001111111111110000 0011222222211111 11111 22233333321
Q ss_pred -eeccc-CCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHH
Q 004010 489 -ILGIK-PAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAAL 566 (779)
Q Consensus 489 -~~~~~-~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 566 (779)
+-... ..+.++.||||||+.+ +++||||+|||++|+++++.+ .|..++|||||||||||++||
T Consensus 348 tVga~~~~~~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aAL 412 (455)
T cd07478 348 TVGAYNQNNNSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACAL 412 (455)
T ss_pred EEEEEeCCCCcccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHH
Confidence 11112 2346999999999976 899999999999999999865 799999999999999999999
Q ss_pred HHhhC------CCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCccCCC
Q 004010 567 LKSAH------PDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAG 614 (779)
Q Consensus 567 l~~~~------P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 614 (779)
|+|.+ |.|++++||++|++||+++. +..+++.+||||
T Consensus 413 l~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 413 LLQWGIVRGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred HHHhchhccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 99865 56799999999999999874 234567799998
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.2e-45 Score=387.91 Aligned_cols=248 Identities=27% Similarity=0.322 Sum_probs=202.4
Q ss_pred CccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCC
Q 004010 125 LWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGG 204 (779)
Q Consensus 125 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 204 (779)
+|..+++|+||+|||||+|||++||+|.+....+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc--------------
Confidence 79999999999999999999999999975321110 00000
Q ss_pred CCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCC-CCHHHHHHHHHHhhhC
Q 004010 205 GINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG-CFDSDILAAFDAAVND 283 (779)
Q Consensus 205 ~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~s~i~~ai~~A~~~ 283 (779)
......|..+|||||||||+|+... .+.||||+|+|+.+|++..... ++..++++||+||+++
T Consensus 42 ------~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~ 105 (267)
T cd07476 42 ------AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQ 105 (267)
T ss_pred ------cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 0123456789999999999987522 2479999999999999986522 4577899999999999
Q ss_pred CCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCccccCCCceEEeccCccCcceeeEEEeCCC
Q 004010 284 GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDG 363 (779)
Q Consensus 284 gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~l~~g 363 (779)
|+||||||||... ........+..++.++.++|++||+||||+|.....++...|++|+|||...
T Consensus 106 g~~VIN~S~G~~~--~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 170 (267)
T cd07476 106 GAHIINISGGRLT--QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD------------- 170 (267)
T ss_pred CCCEEEecCCcCC--CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC-------------
Confidence 9999999999763 2233455678888889999999999999999887778888999999998321
Q ss_pred eEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccC
Q 004010 364 RRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGI 443 (779)
Q Consensus 364 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 443 (779)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCC
Q 004010 444 SNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGV 523 (779)
Q Consensus 444 ~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 523 (779)
.+.++.||+||+.. .||||+|||.
T Consensus 171 ---------------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~ 194 (267)
T cd07476 171 ---------------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGE 194 (267)
T ss_pred ---------------------------------------------------CCCeeeecCCCCCC-----CCceEEecCC
Confidence 11456799999853 4789999999
Q ss_pred cEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCC----CCHHHHHHHHHhccccccC
Q 004010 524 NILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD----WSPAAIRSAMMTTASIVDN 592 (779)
Q Consensus 524 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~sp~~Ik~~L~~TA~~~~~ 592 (779)
+|+++++.+ .|..++|||||||||||++|||+|.+|. ++|++||++|++||+++..
T Consensus 195 ~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 195 NILGAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred CceeecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 999998765 7999999999999999999999999887 9999999999999999854
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.4e-45 Score=377.83 Aligned_cols=235 Identities=32% Similarity=0.418 Sum_probs=190.8
Q ss_pred cEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCC
Q 004010 135 VIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMS 214 (779)
Q Consensus 135 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 214 (779)
|+|||||||||.+||+|++.. +..+++.. ..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~----------------------~~ 31 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG----------------------PG 31 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC----------------------CC
Confidence 789999999999999996431 11111110 13
Q ss_pred CCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCC---CCCHHHHHHHHHHhhhCCCcEEEec
Q 004010 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA---GCFDSDILAAFDAAVNDGVDVISIS 291 (779)
Q Consensus 215 ~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~s~i~~ai~~A~~~gvdVIn~S 291 (779)
..|..+|||||||||+|+.... .|+||+|+|+.+|++.... .++..++++||+||++.|++|||||
T Consensus 32 ~~~~~~HGT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 100 (239)
T cd05561 32 APAPSAHGTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNIS 100 (239)
T ss_pred CCCCCCCHHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 4567899999999999975321 5999999999999998641 2677889999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCC-CccccCCCceEEeccCccCcceeeEEEeCCCeEEEeEE
Q 004010 292 IGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVS 370 (779)
Q Consensus 292 lG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 370 (779)
||.. . ...+..++.++.++|++||+||||+|+.. ..++...|++|+|++...
T Consensus 101 ~g~~---~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------- 153 (239)
T cd05561 101 LAGP---P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------- 153 (239)
T ss_pred CCCC---C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------
Confidence 9976 2 34677778889999999999999999753 356677788888887321
Q ss_pred eecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccc
Q 004010 371 LYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV 450 (779)
Q Consensus 371 ~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 450 (779)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeec
Q 004010 451 GDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWT 530 (779)
Q Consensus 451 ~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 530 (779)
.+.++.||++|+.. ||.|||.+|+++.+
T Consensus 154 --------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~ 181 (239)
T cd05561 154 --------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAP 181 (239)
T ss_pred --------------------------------------------CCCccccCCCCCcc--------eEEccccceecccC
Confidence 12567899999875 99999999999876
Q ss_pred CCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCc
Q 004010 531 EAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYD 610 (779)
Q Consensus 531 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~ 610 (779)
.+ .|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..
T Consensus 182 ~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~ 235 (239)
T cd05561 182 GG-------------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPV 235 (239)
T ss_pred CC-------------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCC
Confidence 54 799999999999999999999999999 999999999999998773 3345568
Q ss_pred cCCC
Q 004010 611 FGAG 614 (779)
Q Consensus 611 ~G~G 614 (779)
||||
T Consensus 236 ~G~G 239 (239)
T cd05561 236 FGYG 239 (239)
T ss_pred cCCC
Confidence 9998
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=5.7e-45 Score=388.80 Aligned_cols=275 Identities=26% Similarity=0.323 Sum_probs=189.0
Q ss_pred CCcEEEEEecCCCCCCCCcccCCCC-CCCCcceeeeecccccCCccCCceeeeeeecccccccc----CCCCCCCCCCCC
Q 004010 133 SDVIIGVFDTGIWPERRSFSDLNIG-SIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAA----GGSAGPIGGGIN 207 (779)
Q Consensus 133 ~gv~VgVIDtGid~~Hp~f~~~~~~-~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~----~~~~~~~~~~~~ 207 (779)
|+|+|||||||||++||+|++.-.. +......|....+.+|.. + +..++|...+... +...+..... .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~-~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKG-Y 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccc-c
Confidence 6899999999999999999864211 000001111112222211 0 2333343211100 0000000000 0
Q ss_pred CccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcE
Q 004010 208 ETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDV 287 (779)
Q Consensus 208 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdV 287 (779)
...+...+.+..+|||||||||+|...++.+ +.||||+|+|+.+|++... ....+++++||+||++.|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g-~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNG-DERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCC-CcCHHHHHHHHHHHHHCCCcE
Confidence 0112234557899999999999998654322 4899999999999998654 567889999999999999999
Q ss_pred EEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCcc---c--------cCCCceEEeccCccCcceee
Q 004010 288 ISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV---T--------NLAPWIVTVGAGTIDRNFPA 356 (779)
Q Consensus 288 In~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~~p~vitVgAst~d~~~~~ 356 (779)
||||||.. ... ....+..++.++.++|+++|+||||+|...... + ...+++|+|||.....
T Consensus 145 iN~S~G~~---~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~---- 216 (291)
T cd07483 145 INMSFGKS---FSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY---- 216 (291)
T ss_pred EEeCCCCC---CCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC----
Confidence 99999975 222 234567777788999999999999998643211 1 1234555555421100
Q ss_pred EEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceE
Q 004010 357 EVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVG 436 (779)
Q Consensus 357 ~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 436 (779)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCC
Q 004010 437 MILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKP 516 (779)
Q Consensus 437 ~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKP 516 (779)
....++.||++|+. +|
T Consensus 217 ---------------------------------------------------------~~~~~~~~Sn~G~~-------~v 232 (291)
T cd07483 217 ---------------------------------------------------------ENNLVANFSNYGKK-------NV 232 (291)
T ss_pred ---------------------------------------------------------CcccccccCCCCCC-------ce
Confidence 01146889999985 35
Q ss_pred eEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004010 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (779)
Q Consensus 517 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 588 (779)
||.|||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 233 di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 233 DVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999997765 7999999999999999999999999999999999999999984
No 12
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-44 Score=386.91 Aligned_cols=291 Identities=40% Similarity=0.522 Sum_probs=217.3
Q ss_pred CCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccc-cCCCCCCCCCCCCCcc
Q 004010 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEA-AGGSAGPIGGGINETV 210 (779)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~-~~~~~~~~~~~~~~~~ 210 (779)
|+||+|||||+||+++||+|.+.. ..+.++...++|...... ...... ....
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 53 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPY------PSPL 53 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCccccccc------cccc
Confidence 899999999999999999997531 123445555554432110 000000 0000
Q ss_pred ccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEEe
Q 004010 211 EFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISI 290 (779)
Q Consensus 211 ~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~ 290 (779)
......|..+|||||||+|+|...+. ..+.|+||+|+|+.+|+++....+...++++||+|+++++++||||
T Consensus 54 ~~~~~~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~ 125 (295)
T cd07474 54 GDASAGDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINL 125 (295)
T ss_pred ccCCCCCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 11234578999999999999986442 2248999999999999998553578889999999999999999999
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCcc--ccCCCceEEeccCccCcceeeEEEeCCCeEEEe
Q 004010 291 SIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV--TNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSG 368 (779)
Q Consensus 291 SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g 368 (779)
|||... . ...+.+..++.++.++|+++|+||||+|...... +...+++|+|||......
T Consensus 126 S~g~~~---~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------- 186 (295)
T cd07474 126 SLGSSV---N-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------- 186 (295)
T ss_pred CCCCCC---C-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------
Confidence 999872 2 2456788888899999999999999998765543 567889999998431000
Q ss_pred EEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCc
Q 004010 369 VSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG 448 (779)
Q Consensus 369 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 448 (779)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCC-CCCCCCCCCCCCeEEeCCCcEEe
Q 004010 449 LVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSAR-GPNGLNPEILKPDLIAPGVNILA 527 (779)
Q Consensus 449 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~-Gp~~~~~~~lKPDI~APG~~I~s 527 (779)
........|+++ |+.. ...+||||+|||++|++
T Consensus 187 --------------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~ 220 (295)
T cd07474 187 --------------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMS 220 (295)
T ss_pred --------------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEe
Confidence 001133445554 4544 48899999999999999
Q ss_pred eecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCC
Q 004010 528 AWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNAST 607 (779)
Q Consensus 528 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 607 (779)
++..... .|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ....
T Consensus 221 ~~~~~~~-----------~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~ 281 (295)
T cd07474 221 TAPGSGT-----------GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYP 281 (295)
T ss_pred eccCCCC-----------ceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCC
Confidence 9876322 79999999999999999999999999999999999999999998754332 1124
Q ss_pred CCccCCCccccccc
Q 004010 608 PYDFGAGHVNLDRA 621 (779)
Q Consensus 608 ~~~~G~G~vn~~~A 621 (779)
+..+|+|+||+.+|
T Consensus 282 ~~~~G~G~l~~~~A 295 (295)
T cd07474 282 VSRQGAGRVDALRA 295 (295)
T ss_pred hhccCcceeccccC
Confidence 56899999999987
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-43 Score=373.57 Aligned_cols=246 Identities=32% Similarity=0.396 Sum_probs=194.5
Q ss_pred CcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccC
Q 004010 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (779)
Q Consensus 134 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 213 (779)
||+||||||||+++||+|.... ..++.++++.++|.... .
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~--------------------~ 40 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNS--------------------N 40 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCC--------------------C
Confidence 7999999999999999995211 11345677766665521 1
Q ss_pred C-CCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCC--CCHHHHHHHHHHhhhCCCcEEEe
Q 004010 214 S-PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGVDVISI 290 (779)
Q Consensus 214 ~-~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~s~i~~ai~~A~~~gvdVIn~ 290 (779)
. ..|..+|||||||+|+|+.. +.+.||||+|+|+.+|+...... ....+++.|+++|.+.|++||||
T Consensus 41 ~~~~~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~ 110 (261)
T cd07493 41 NTNYTDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISS 110 (261)
T ss_pred CCCCCCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 1 35788999999999999752 22589999999999998764311 34567889999999999999999
Q ss_pred ccCCCCCCCC---------CCCCCHHHHHHHHHhcCCcEEEEccCCCCCC---CCccccCCCceEEeccCccCcceeeEE
Q 004010 291 SIGGGDGISS---------PYYLDPIAIGSYGAASRGVFVSSSAGNDGPN---GMSVTNLAPWIVTVGAGTIDRNFPAEV 358 (779)
Q Consensus 291 SlG~~~g~~~---------~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgAst~d~~~~~~~ 358 (779)
|||....... ......+..++..+.++|++||+||||+|.. ....+...|++|+|||...
T Consensus 111 S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~-------- 182 (261)
T cd07493 111 SLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA-------- 182 (261)
T ss_pred CCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc--------
Confidence 9998731010 0012356777888899999999999999977 3456677889999988211
Q ss_pred EeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEE
Q 004010 359 RLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMI 438 (779)
Q Consensus 359 ~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i 438 (779)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeE
Q 004010 439 LANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDL 518 (779)
Q Consensus 439 ~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI 518 (779)
.+.++.||++||+.+ +++||||
T Consensus 183 --------------------------------------------------------~~~~~~~S~~G~~~~--~~~~pdi 204 (261)
T cd07493 183 --------------------------------------------------------NGNKASFSSIGPTAD--GRLKPDV 204 (261)
T ss_pred --------------------------------------------------------CCCCCccCCcCCCCC--CCcCCce
Confidence 125688999999875 8999999
Q ss_pred EeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004010 519 IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (779)
Q Consensus 519 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 588 (779)
+|||.+|++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 205 ~a~G~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 205 MALGTGIYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EecCCCeEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999855443 7899999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.9e-43 Score=372.76 Aligned_cols=247 Identities=33% Similarity=0.400 Sum_probs=194.1
Q ss_pred CCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccc
Q 004010 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (779)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (779)
|+||+||||||||+++||+|.+. |++... . ++ ...+...+. ...
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~--~---------~~------~~~~~~~d~-----------~~~ 44 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG--G---------SA------DHDYNWFDP-----------VGN 44 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC--C---------Cc------ccccccccC-----------CCC
Confidence 89999999999999999999863 111000 0 00 000000000 011
Q ss_pred cCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhh---------
Q 004010 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN--------- 282 (779)
Q Consensus 212 ~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~--------- 282 (779)
...+.|..+|||||||||+|..... ...||||+|+|+.+|+++.. ++...+++++++++++
T Consensus 45 ~~~~~d~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (264)
T cd07481 45 TPLPYDDNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRN-GGNDADYLRCAQWMLAPTDSAGNPA 114 (264)
T ss_pred CCCCCCCCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCC-CCcHHHHHHHHHHHHhccccccccc
Confidence 2456678999999999999875332 12799999999999999887 6888899999999975
Q ss_pred ---CCCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCc---cccCCCceEEeccCccCcceee
Q 004010 283 ---DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS---VTNLAPWIVTVGAGTIDRNFPA 356 (779)
Q Consensus 283 ---~gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgAst~d~~~~~ 356 (779)
.|++|||||||... . ....+..++..+.++|++||+||||++..... .+...|++|+|||.+.
T Consensus 115 ~~~~~~~Iin~S~G~~~---~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 115 DPDLAPDVINNSWGGPS---G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccCCeEEEeCCCcCC---C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 78999999999872 2 24556666777888999999999999865432 4567788899887321
Q ss_pred EEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceE
Q 004010 357 EVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVG 436 (779)
Q Consensus 357 ~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 436 (779)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCC
Q 004010 437 MILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKP 516 (779)
Q Consensus 437 ~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKP 516 (779)
.+.++.||++||... +.+||
T Consensus 184 ----------------------------------------------------------~~~~~~~S~~g~~~~--~~~~~ 203 (264)
T cd07481 184 ----------------------------------------------------------NDVLADFSSRGPSTY--GRIKP 203 (264)
T ss_pred ----------------------------------------------------------CCCCccccCCCCCCC--CCcCc
Confidence 125688999999875 78999
Q ss_pred eEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004010 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD--WSPAAIRSAMMTTAS 588 (779)
Q Consensus 517 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--~sp~~Ik~~L~~TA~ 588 (779)
||+|||.+|+++++.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 204 dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 204 DISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999999998774 7999999999999999999999999999 999999999999985
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=9.4e-43 Score=378.97 Aligned_cols=221 Identities=30% Similarity=0.368 Sum_probs=165.4
Q ss_pred CCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCC--CCHHHHHHHHHHhhhCCCcEEEeccC
Q 004010 216 RDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGVDVISISIG 293 (779)
Q Consensus 216 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (779)
.|+.+|||||||||||+..++ ..+.||||+|+|+++|+++...+ +...++++||++|++.|+||||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 478899999999999985332 22489999999999999876423 23467999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHH-HhcCCcEEEEccCCCCCCCCccc---cCCCceEEeccCccCcceeeEEEeCCCeEEEeE
Q 004010 294 GGDGISSPYYLDPIAIGSYG-AASRGVFVSSSAGNDGPNGMSVT---NLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGV 369 (779)
Q Consensus 294 ~~~g~~~~~~~d~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~---~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~ 369 (779)
... ..+ ....+...+.+ +.++||+||+||||+|+...++. +..+++|+|||........+.
T Consensus 254 ~~~--~~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 254 EAT--HWP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred cCC--CCc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 873 111 11233333433 45789999999999998776643 246899999994321110000
Q ss_pred EeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCcc
Q 004010 370 SLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGL 449 (779)
Q Consensus 370 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 449 (779)
|.
T Consensus 319 ------------y~------------------------------------------------------------------ 320 (412)
T cd04857 319 ------------YS------------------------------------------------------------------ 320 (412)
T ss_pred ------------cc------------------------------------------------------------------
Confidence 00
Q ss_pred ccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeee
Q 004010 450 VGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAW 529 (779)
Q Consensus 450 ~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 529 (779)
......+.++.||||||+.+ +.+||||+|||+.|.+.-
T Consensus 321 ----------------------------------------~~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p 358 (412)
T cd04857 321 ----------------------------------------LREKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVP 358 (412)
T ss_pred ----------------------------------------cccccCCccccccccCCccc--CCcCceEEeCCCcEEEcc
Confidence 00011236899999999986 899999999999998752
Q ss_pred cCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 004010 530 TEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS----AHPDWSPAAIRSAMMTTASIV 590 (779)
Q Consensus 530 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~ 590 (779)
.... ..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 359 ~~~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 359 NWTL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred cCCC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 2111 1689999999999999999999975 478999999999999999863
No 16
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-44 Score=372.62 Aligned_cols=323 Identities=28% Similarity=0.433 Sum_probs=256.4
Q ss_pred CCceEEEEeCCCCCCCCCcchHHHHHhhhCCC----------------------ceeEEEec---ceeeEEEEEeCHHHH
Q 004010 34 TVKTFIFRIDSQSKPSIFPTHYHWYSSEFASP----------------------VQILHTYD---TVFHGFSATLSPDQA 88 (779)
Q Consensus 34 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~y~---~~~~g~s~~l~~~~~ 88 (779)
.+++|||.|++....+....|.+|++...... ..+.+.|. .+|+|..-..+.+-.
T Consensus 79 ~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 79 LPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 37899999997776666777777777654321 11334443 377888888999999
Q ss_pred HHHhCCCCeEEEEEcceecccc-----cCCCcccCCccccC-------Cc----cCCCCCCCcEEEEEecCCCCCCCCcc
Q 004010 89 ASLSRHPSVLAVIEDQRRQLHT-----TRSPQFLGLRNQQG-------LW----SESDYGSDVIIGVFDTGIWPERRSFS 152 (779)
Q Consensus 89 ~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~~~~G~gv~VgVIDtGid~~Hp~f~ 152 (779)
..+++.|-++.++++..++... .+....|||.++.. .| .....|+||...|+||||+.+||+|.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 9999999999999998877654 34445567655421 12 12347999999999999999999998
Q ss_pred cCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCCCCCCCCccchhhhhhccc
Q 004010 153 DLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAAGR 232 (779)
Q Consensus 153 ~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~ 232 (779)
++. .| |..+.. -....|++||||||||+|+++
T Consensus 239 gRa------~w------Ga~i~~------------------------------------~~~~~D~nGHGTH~AG~I~sK 270 (501)
T KOG1153|consen 239 GRA------IW------GATIPP------------------------------------KDGDEDCNGHGTHVAGLIGSK 270 (501)
T ss_pred cce------ec------ccccCC------------------------------------CCcccccCCCcceeeeeeecc
Confidence 642 22 111110 023468999999999999998
Q ss_pred ccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhC---------CCcEEEeccCCCCCCCCCCC
Q 004010 233 HAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND---------GVDVISISIGGGDGISSPYY 303 (779)
Q Consensus 233 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~---------gvdVIn~SlG~~~g~~~~~~ 303 (779)
. .|||.+++|+++||+++++.+..+++++++|++++. +..|.|||+|+. .
T Consensus 271 t--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-------~ 329 (501)
T KOG1153|consen 271 T--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-------R 329 (501)
T ss_pred c--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-------c
Confidence 5 699999999999999999459999999999999986 467999999998 3
Q ss_pred CCHHHHHHHHHhcCCcEEEEccCCCCCCCC-ccccCCCceEEeccCccCcceeeEEEeCCCeEEEeEEeecCCCCCCceE
Q 004010 304 LDPIAIGSYGAASRGVFVSSSAGNDGPNGM-SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMY 382 (779)
Q Consensus 304 ~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~ 382 (779)
.-++..|+.+|.+.||++++||||+..+.+ +.++.+..+|||||+|.
T Consensus 330 S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~-------------------------------- 377 (501)
T KOG1153|consen 330 SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK-------------------------------- 377 (501)
T ss_pred cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc--------------------------------
Confidence 456788889999999999999999998876 55678899999999643
Q ss_pred eEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccCCcccCeEEEc
Q 004010 383 PLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALG 462 (779)
Q Consensus 383 ~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~ 462 (779)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeecCCCCCCCCCCCC
Q 004010 463 SDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDL 542 (779)
Q Consensus 463 ~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 542 (779)
.+.+|.||+||+++ ||.|||++|+|+|.+...
T Consensus 378 --------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-------- 409 (501)
T KOG1153|consen 378 --------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-------- 409 (501)
T ss_pred --------------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc--------
Confidence 12789999999998 999999999999998643
Q ss_pred ccceeEeecCccchhhhHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 004010 543 RKTEFNILSGTSMACPHVSGAAALLKSAHPD---------WSPAAIRSAMMTTAS 588 (779)
Q Consensus 543 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~---------~sp~~Ik~~L~~TA~ 588 (779)
.-.++||||||+|||||++|..++.+|. .||.++|..+..-..
T Consensus 410 ---at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 410 ---ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred ---chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 6789999999999999999999999883 388888877765444
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=6.9e-43 Score=370.41 Aligned_cols=263 Identities=29% Similarity=0.318 Sum_probs=200.3
Q ss_pred CccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCC
Q 004010 125 LWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGG 204 (779)
Q Consensus 125 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 204 (779)
+|..+.+|+||+|+|||||||++||+|.+.... ..+. .+...+......
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~~------------~~~~~~~~~~~~------ 50 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGYD------------PAVNGYNFVPNV------ 50 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCcc------------cccCCccccccc------
Confidence 799999999999999999999999999864110 0000 000110000000
Q ss_pred CCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCC
Q 004010 205 GINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDG 284 (779)
Q Consensus 205 ~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~g 284 (779)
........|..||||||||||+|+..+....-|++ .+.|+||+|+|+.+|++.....+...+++++|++|++.|
T Consensus 51 ----~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g 124 (273)
T cd07485 51 ----GDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNG 124 (273)
T ss_pred ----CCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcC
Confidence 00113345778999999999999765432222221 235799999999999998763477888999999999999
Q ss_pred CcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcC-------CcEEEEccCCCCCCCCccccCCCceEEeccCccCcceeeE
Q 004010 285 VDVISISIGGGDGISSPYYLDPIAIGSYGAASR-------GVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAE 357 (779)
Q Consensus 285 vdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~ 357 (779)
++|||||||.. ....+...+..++..+.++ |++||+||||++......+...|++|+||+.+.
T Consensus 125 ~~Vin~S~g~~---~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------- 194 (273)
T cd07485 125 AVILQNSWGGT---GGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------- 194 (273)
T ss_pred CcEEEecCCCC---CccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-------
Confidence 99999999987 3333456677777788888 999999999999887776888899999988321
Q ss_pred EEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEE
Q 004010 358 VRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGM 437 (779)
Q Consensus 358 ~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~ 437 (779)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCe
Q 004010 438 ILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPD 517 (779)
Q Consensus 438 i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPD 517 (779)
.+.++.||++|+.. |
T Consensus 195 ---------------------------------------------------------~~~~~~~S~~g~~~--------~ 209 (273)
T cd07485 195 ---------------------------------------------------------NDNKASFSNYGRWV--------D 209 (273)
T ss_pred ---------------------------------------------------------CCCcCccccCCCce--------E
Confidence 12567899999875 9
Q ss_pred EEeCCC-cEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004010 518 LIAPGV-NILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD-WSPAAIRSAMMTT 586 (779)
Q Consensus 518 I~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-~sp~~Ik~~L~~T 586 (779)
|+|||. .|+++++.... .....|..++|||||||+|||++|||+|++|+ ++|+|||++|++|
T Consensus 210 i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 210 IAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred EEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 999999 89988765311 11226899999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-42 Score=364.76 Aligned_cols=258 Identities=34% Similarity=0.467 Sum_probs=203.0
Q ss_pred CCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccc
Q 004010 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (779)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (779)
|+||+|+|||+||+++||+|.+.... .+.+... ...
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~-----------------~~~ 36 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNT-----------------VNG 36 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------ccccccc-----------------ccC
Confidence 89999999999999999999754211 0001000 001
Q ss_pred cCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhC----CCcE
Q 004010 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND----GVDV 287 (779)
Q Consensus 212 ~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~----gvdV 287 (779)
.....|..+|||||||+|+|...+. .+.+.|+||+|+|+.+|+++.......+++++||+|+++. +++|
T Consensus 37 ~~~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 37 RTTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceE
Confidence 2345677899999999999986542 1225899999999999999887336788999999999998 9999
Q ss_pred EEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCC--ccccCCCceEEeccCccCcceeeEEEeCCCeE
Q 004010 288 ISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM--SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRR 365 (779)
Q Consensus 288 In~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgAst~d~~~~~~~~l~~g~~ 365 (779)
||||||... ......+.+..++.++.++|++||+||||++.... ..+...+++|+|||...+..
T Consensus 110 in~S~g~~~--~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 110 VNLSLGAPP--DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred EEeccCCCC--CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 999999873 22445678888889999999999999999998775 55677889999998433211
Q ss_pred EEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004010 366 LSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (779)
Q Consensus 366 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (779)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcE
Q 004010 446 GEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNI 525 (779)
Q Consensus 446 ~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 525 (779)
....++.||++||+.. +++||||+|||++|
T Consensus 176 ------------------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i 205 (264)
T cd07487 176 ------------------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENI 205 (264)
T ss_pred ------------------------------------------------CCccccccccCCCCCC--CCcCCCEEccccce
Confidence 0014688999999976 89999999999999
Q ss_pred EeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004010 526 LAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (779)
Q Consensus 526 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 588 (779)
+++.+.... ........|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 206 ~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 206 VSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred Eeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 998654311 01112237899999999999999999999999999999999999999985
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.8e-41 Score=356.15 Aligned_cols=233 Identities=39% Similarity=0.505 Sum_probs=193.2
Q ss_pred CccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCC
Q 004010 125 LWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGG 204 (779)
Q Consensus 125 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 204 (779)
.|..+++|+||+|+|||+||+++||+|.++ +...+.|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 667789999999999999999999999743 1112222210
Q ss_pred CCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhC-
Q 004010 205 GINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND- 283 (779)
Q Consensus 205 ~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~- 283 (779)
....|..+|||||||||+|+. .||||+|+|+.+|+++.......++++++++++++.
T Consensus 57 --------~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~ 114 (255)
T cd04077 57 --------DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDA 114 (255)
T ss_pred --------CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcc
Confidence 125678899999999999863 599999999999999877346778899999999987
Q ss_pred ----CCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCC-CccccCCCceEEeccCccCcceeeEE
Q 004010 284 ----GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEV 358 (779)
Q Consensus 284 ----gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAst~d~~~~~~~ 358 (779)
+++|||+|||.. . ...+..++.++.++|+++|+||||+|... ...+...|++|+||+.+.+
T Consensus 115 ~~~~~~~iin~S~g~~---~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------- 180 (255)
T cd04077 115 TKRGKPAVANMSLGGG---A----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------- 180 (255)
T ss_pred cccCCCeEEEeCCCCC---C----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------
Confidence 489999999987 2 45677777889999999999999999765 4556778999999984221
Q ss_pred EeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEE
Q 004010 359 RLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMI 438 (779)
Q Consensus 359 ~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i 438 (779)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeE
Q 004010 439 LANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDL 518 (779)
Q Consensus 439 ~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI 518 (779)
+.++.||++||.. ||
T Consensus 181 ---------------------------------------------------------~~~~~~S~~g~~~--------~i 195 (255)
T cd04077 181 ---------------------------------------------------------DARASFSNYGSCV--------DI 195 (255)
T ss_pred ---------------------------------------------------------CCccCcccCCCCC--------cE
Confidence 1467899999975 99
Q ss_pred EeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004010 519 IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASI 589 (779)
Q Consensus 519 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~ 589 (779)
+|||.+|.++...... .|..++|||||||+|||++|||+|++|+++++|||++|++||++
T Consensus 196 ~apG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 196 FAPGVDILSAWIGSDT-----------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EeCCCCeEecccCCCC-----------cEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999998774322 79999999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=2e-41 Score=357.04 Aligned_cols=241 Identities=34% Similarity=0.434 Sum_probs=200.2
Q ss_pred cCCccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCC
Q 004010 123 QGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPI 202 (779)
Q Consensus 123 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 202 (779)
..+|..+ +|+||+|+|||+||+++||+|... ++...+++...
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~----------- 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN----------- 60 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC-----------
Confidence 4578888 899999999999999999998422 22222222221
Q ss_pred CCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhh
Q 004010 203 GGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN 282 (779)
Q Consensus 203 ~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~ 282 (779)
...+.|..+|||||||||++...+.. .+.|+||+|+|+.+|+++....+...+++++|+++++
T Consensus 61 ---------~~~~~d~~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~ 123 (260)
T cd07484 61 ---------DSDAMDDNGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAAD 123 (260)
T ss_pred ---------CCCCCCCCCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHH
Confidence 12356788999999999998754332 2489999999999999987634788899999999999
Q ss_pred CCCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCccccCCCceEEeccCccCcceeeEEEeCC
Q 004010 283 DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGD 362 (779)
Q Consensus 283 ~gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~l~~ 362 (779)
.|++|||||||.. . ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 124 ~~~~iin~S~g~~---~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------ 185 (260)
T cd07484 124 KGAKVINLSLGGG---L---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------ 185 (260)
T ss_pred CCCeEEEecCCCC---C---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC------------
Confidence 9999999999987 2 345677777888999999999999999988888999999999998321
Q ss_pred CeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEecc
Q 004010 363 GRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANG 442 (779)
Q Consensus 363 g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 442 (779)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCC
Q 004010 443 ISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPG 522 (779)
Q Consensus 443 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 522 (779)
.+..+.||++|+.. |++|||
T Consensus 186 ----------------------------------------------------~~~~~~~s~~g~~~--------~~~apG 205 (260)
T cd07484 186 ----------------------------------------------------DDKRASFSNYGKWV--------DVSAPG 205 (260)
T ss_pred ----------------------------------------------------CCCcCCcCCCCCCc--------eEEeCC
Confidence 12457899999865 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004010 523 VNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIV 590 (779)
Q Consensus 523 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~ 590 (779)
.+|+++.+.. .|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 206 ~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 206 GGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 9999987664 799999999999999999999999999 99999999999999875
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.3e-42 Score=365.99 Aligned_cols=233 Identities=26% Similarity=0.219 Sum_probs=166.4
Q ss_pred CCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCC----CCCHHHHHHHHHHhhhCC---CcE
Q 004010 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA----GCFDSDILAAFDAAVNDG---VDV 287 (779)
Q Consensus 215 ~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~----g~~~s~i~~ai~~A~~~g---vdV 287 (779)
+.|..||||||||||++....+ ....|+||+++|+.+|++...+ ....+++++||+||++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 5688999999999999764331 1237999999999999998862 256678999999999853 599
Q ss_pred EEeccCCCCCCCCCCCCCHHHHHHH-HHhcCCcEEEEccCCCCCCCCc------------cccCCCceEEeccCccCcce
Q 004010 288 ISISIGGGDGISSPYYLDPIAIGSY-GAASRGVFVSSSAGNDGPNGMS------------VTNLAPWIVTVGAGTIDRNF 354 (779)
Q Consensus 288 In~SlG~~~g~~~~~~~d~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgAst~d~~~ 354 (779)
||||||........ ....+..++. .+.++|++||+||||+|..... .+..++++|+|||.+.+...
T Consensus 106 iN~SlG~~~~~~~~-~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~ 184 (291)
T cd04847 106 FNLSLGSPLPIDDG-RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDI 184 (291)
T ss_pred EEEecCCCCCccCC-CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccC
Confidence 99999987311111 1123444443 3568999999999999987643 24567899999996543221
Q ss_pred eeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCc
Q 004010 355 PAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGG 434 (779)
Q Consensus 355 ~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 434 (779)
... + .
T Consensus 185 ~~~------------s----------------------------~----------------------------------- 189 (291)
T cd04847 185 TDR------------A----------------------------R----------------------------------- 189 (291)
T ss_pred CCc------------c----------------------------c-----------------------------------
Confidence 000 0 0
Q ss_pred eEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCC
Q 004010 435 VGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEIL 514 (779)
Q Consensus 435 ~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~l 514 (779)
.+.......+.||+|||... +.+
T Consensus 190 -------------------------------------------------------~~~~~~~~~~~fs~~Gp~~~--~~~ 212 (291)
T cd04847 190 -------------------------------------------------------YSAVGPAPAGATTSSGPGSP--GPI 212 (291)
T ss_pred -------------------------------------------------------ccccccccCCCccccCCCCC--CCc
Confidence 00000012344999999975 899
Q ss_pred CCeEEeCCCcEEeeecCCCCC-----CCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004010 515 KPDLIAPGVNILAAWTEAVGP-----TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (779)
Q Consensus 515 KPDI~APG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 588 (779)
||||+|||++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 213 KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 213 KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999998764421100 00001112337999999999999999999999999999999999999999985
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-41 Score=353.49 Aligned_cols=253 Identities=35% Similarity=0.425 Sum_probs=186.8
Q ss_pred CcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccC
Q 004010 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (779)
Q Consensus 134 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 213 (779)
||+|||||||||++||+|.+. +...+.|... . .....
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~-----~-----------~~~~~ 37 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDEN-----R-----------RISAT 37 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCC-----C-----------CCCCC
Confidence 799999999999999999753 1111122111 0 01113
Q ss_pred CCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEEeccC
Q 004010 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (779)
Q Consensus 214 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (779)
...|..+|||||||||+|+..+ +...||||+|+|+.+|++... ++..++++++|+|+++.+++|||||||
T Consensus 38 ~~~d~~~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 38 EVFDAGGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCC-CCcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4557889999999999998642 224799999999999999887 688899999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhc-CCcEEEEccCCCCCCCCccccCCCceEEeccCccCcceeeEEEeCCCeEEEeEEee
Q 004010 294 GGDGISSPYYLDPIAIGSYGAAS-RGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLY 372 (779)
Q Consensus 294 ~~~g~~~~~~~d~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~ 372 (779)
... .. .+.+...+....+ +|++||+||||+|......+...|++|+|||.+.+........
T Consensus 108 ~~~---~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------- 169 (254)
T cd07490 108 GTY---YS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------- 169 (254)
T ss_pred cCC---CC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-------------
Confidence 872 22 4555555544443 6999999999999887778888999999999643221000000
Q ss_pred cCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccC
Q 004010 373 AGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD 452 (779)
Q Consensus 373 ~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 452 (779)
+
T Consensus 170 -------------------------~------------------------------------------------------ 170 (254)
T cd07490 170 -------------------------F------------------------------------------------------ 170 (254)
T ss_pred -------------------------C------------------------------------------------------
Confidence 0
Q ss_pred CcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeecCC
Q 004010 453 AHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEA 532 (779)
Q Consensus 453 ~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 532 (779)
.......++.+|... ....|||++|||.+|+++....
T Consensus 171 ------------------------------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~ 207 (254)
T cd07490 171 ------------------------------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA 207 (254)
T ss_pred ------------------------------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccccCC
Confidence 001122223333332 3578999999999999865221
Q ss_pred CCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004010 533 VGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (779)
Q Consensus 533 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 588 (779)
. ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 208 ~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 N---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred C---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1 1227999999999999999999999999999999999999999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.1e-41 Score=357.77 Aligned_cols=207 Identities=32% Similarity=0.415 Sum_probs=167.0
Q ss_pred CCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhh----------hC
Q 004010 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV----------ND 283 (779)
Q Consensus 214 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~----------~~ 283 (779)
...+..+|||||||||+|...++. | +.||||+|+|+.+|+++.. +.+.+++++|++||+ .+
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~~~-~~~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLGKC-GGTLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEecCC-CCcHHHHHHHHHHHhccCcCCCcccCC
Confidence 445788999999999999865332 2 3799999999999999887 668899999999998 46
Q ss_pred CCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCC-CccccCCCceEEeccCccCcceeeEEEeCC
Q 004010 284 GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEVRLGD 362 (779)
Q Consensus 284 gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAst~d~~~~~~~~l~~ 362 (779)
+++|||||||... .. ...+..++..+.++|++||+||||++... ...+...|++|+|||.+.
T Consensus 137 ~~~Iin~S~G~~~---~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------ 199 (285)
T cd07496 137 PAKVINLSLGGDG---AC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------ 199 (285)
T ss_pred CCeEEEeCCCCCC---CC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC------------
Confidence 7899999999872 21 45677788889999999999999999876 566777889999988321
Q ss_pred CeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEecc
Q 004010 363 GRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANG 442 (779)
Q Consensus 363 g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 442 (779)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCC
Q 004010 443 ISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPG 522 (779)
Q Consensus 443 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 522 (779)
.+.++.||++|+.. ||.|||
T Consensus 200 ----------------------------------------------------~~~~~~~S~~g~~v--------di~apG 219 (285)
T cd07496 200 ----------------------------------------------------RGQRASYSNYGPAV--------DVSAPG 219 (285)
T ss_pred ----------------------------------------------------CCCcccccCCCCCC--------CEEeCC
Confidence 12568899999975 999999
Q ss_pred CcEEeeecCCCCCC--CCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004010 523 VNILAAWTEAVGPT--GLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586 (779)
Q Consensus 523 ~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~T 586 (779)
++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 220 GDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99998876432110 00111123368999999999999999999999999999999999999976
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-41 Score=358.95 Aligned_cols=254 Identities=26% Similarity=0.350 Sum_probs=181.6
Q ss_pred ccCCccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCC
Q 004010 122 QQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGP 201 (779)
Q Consensus 122 ~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~ 201 (779)
...+|+.+.+|+||+|+||||||+..|| |...++. + ++ .+..
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~----------- 51 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAP----------- 51 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCC-----------
Confidence 3468999999999999999999999998 7543110 0 00 0000
Q ss_pred CCCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhh
Q 004010 202 IGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV 281 (779)
Q Consensus 202 ~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~ 281 (779)
.......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||+
T Consensus 52 --------~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~ 101 (298)
T cd07494 52 --------GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAI 101 (298)
T ss_pred --------CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHH
Confidence 00123467889999999865 49999999999999854 4567899999999
Q ss_pred hCCCcEEEeccCCCCCCCC-------CCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCccccCCCceEEeccCccCcce
Q 004010 282 NDGVDVISISIGGGDGISS-------PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNF 354 (779)
Q Consensus 282 ~~gvdVIn~SlG~~~g~~~-------~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~ 354 (779)
++++||||||||....... +.....+..++.+|.++|++||+||||++. .+++..|++|+|||.+.+..
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~- 177 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED- 177 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC-
Confidence 9999999999998631010 011335777888899999999999999974 56889999999999644321
Q ss_pred eeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCc
Q 004010 355 PAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGG 434 (779)
Q Consensus 355 ~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 434 (779)
+...
T Consensus 178 --------g~~~-------------------------------------------------------------------- 181 (298)
T cd07494 178 --------GARR-------------------------------------------------------------------- 181 (298)
T ss_pred --------Cccc--------------------------------------------------------------------
Confidence 0000
Q ss_pred eEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCC
Q 004010 435 VGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEIL 514 (779)
Q Consensus 435 ~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~l 514 (779)
.....+.|+|. ..+++.
T Consensus 182 -----------------------------------------------------------~~~~~~~~~s~----~~~g~~ 198 (298)
T cd07494 182 -----------------------------------------------------------ASSYASGFRSK----IYPGRQ 198 (298)
T ss_pred -----------------------------------------------------------ccccccCcccc----cCCCCc
Confidence 00000112111 123556
Q ss_pred CCeE----------------EeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHH
Q 004010 515 KPDL----------------IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAA 578 (779)
Q Consensus 515 KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ 578 (779)
|||+ +|||..|.++..... . .......|..++|||||||||||++|||+|++|.|+++|
T Consensus 199 ~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~--~---~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~ 273 (298)
T cd07494 199 VPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP--D---GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPER 273 (298)
T ss_pred cCccccccCcCCcccccccccCCCcceeccccCCC--C---CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6766 479999876543210 0 001123799999999999999999999999999999999
Q ss_pred HHHHHHhcccccc
Q 004010 579 IRSAMMTTASIVD 591 (779)
Q Consensus 579 Ik~~L~~TA~~~~ 591 (779)
||.+|++||+++.
T Consensus 274 v~~~l~~ta~~~~ 286 (298)
T cd07494 274 ARSLLNKTARDVT 286 (298)
T ss_pred HHHHHHHhCcccC
Confidence 9999999999774
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=9.7e-41 Score=358.13 Aligned_cols=277 Identities=33% Similarity=0.400 Sum_probs=199.6
Q ss_pred CCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCC
Q 004010 128 ESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGIN 207 (779)
Q Consensus 128 ~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~ 207 (779)
++++|+||+|||||||||++||+|.+... .+.. ..++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC-----------------
Confidence 57899999999999999999999976421 0011 12334443222211
Q ss_pred CccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCC--CCHHHHHHHHHHhhhCCC
Q 004010 208 ETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGV 285 (779)
Q Consensus 208 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~s~i~~ai~~A~~~gv 285 (779)
...|..+|||||||||+|+..+.... ..+.|+||+|+|+.+|+++.. + ....++..+++++.+.++
T Consensus 49 ------~~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 116 (293)
T cd04842 49 ------TKDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTS-GNLSSPPDLNKLFSPMYDAGA 116 (293)
T ss_pred ------CCCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccC-ccccCCccHHHHHHHHHHhCC
Confidence 12278999999999999986554311 124899999999999999876 3 556678899999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCHHHHHHHHHh-c-CCcEEEEccCCCCCCCC---ccccCCCceEEeccCccCcceeeEEEe
Q 004010 286 DVISISIGGGDGISSPYYLDPIAIGSYGAA-S-RGVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVRL 360 (779)
Q Consensus 286 dVIn~SlG~~~g~~~~~~~d~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAst~d~~~~~~~~l 360 (779)
+|||||||... ... ......++.++. + +|++||+||||+|.... ..+...+++|+|||.+.+.....
T Consensus 117 ~Vin~S~G~~~---~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---- 188 (293)
T cd04842 117 RISSNSWGSPV---NNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---- 188 (293)
T ss_pred EEEeccCCCCC---ccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----
Confidence 99999999873 211 123333333332 3 89999999999997765 56778899999999654332000
Q ss_pred CCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEe
Q 004010 361 GDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILA 440 (779)
Q Consensus 361 ~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 440 (779)
..|..
T Consensus 189 -----------------------------------~~~~~---------------------------------------- 193 (293)
T cd04842 189 -----------------------------------EGGLG---------------------------------------- 193 (293)
T ss_pred -----------------------------------ccccc----------------------------------------
Confidence 00000
Q ss_pred ccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEe
Q 004010 441 NGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIA 520 (779)
Q Consensus 441 n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A 520 (779)
.......++.||++||... +++||||+|
T Consensus 194 --------------------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~A 221 (293)
T cd04842 194 --------------------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVA 221 (293)
T ss_pred --------------------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEEC
Confidence 0012236899999999875 899999999
Q ss_pred CCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004010 521 PGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH-----P---DWSPAAIRSAMMTTAS 588 (779)
Q Consensus 521 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~~sp~~Ik~~L~~TA~ 588 (779)
||++|+++...... ........|..++|||||||+|||++|||+|++ | .+++.+||++|++||+
T Consensus 222 pG~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 222 PGTGILSARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCeEeccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999754300 011122378999999999999999999999985 4 6677899999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-40 Score=346.72 Aligned_cols=207 Identities=34% Similarity=0.398 Sum_probs=168.3
Q ss_pred CCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEEeccC
Q 004010 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (779)
Q Consensus 214 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (779)
.+.|..+|||||||||+|+..+.. .+.|+||+|+|+.+|+++....+..+++.+++++|++.+++|||||||
T Consensus 35 ~~~~~~~HGT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g 106 (242)
T cd07498 35 PTSDIDGHGTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWG 106 (242)
T ss_pred CCCCCCCCHHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccC
Confidence 346789999999999999864322 248999999999999998763467889999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhc-CCcEEEEccCCCCCCCCccccCCCceEEeccCccCcceeeEEEeCCCeEEEeEEee
Q 004010 294 GGDGISSPYYLDPIAIGSYGAAS-RGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLY 372 (779)
Q Consensus 294 ~~~g~~~~~~~d~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~ 372 (779)
... ........+..++..+.+ +|++||+||||+|......+...|++|+|||.+.
T Consensus 107 ~~~--~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~---------------------- 162 (242)
T cd07498 107 GSD--STESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS---------------------- 162 (242)
T ss_pred CCC--CCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC----------------------
Confidence 873 222334567777777888 9999999999999887777888999999998421
Q ss_pred cCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccC
Q 004010 373 AGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD 452 (779)
Q Consensus 373 ~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 452 (779)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeecCC
Q 004010 453 AHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEA 532 (779)
Q Consensus 453 ~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 532 (779)
.+.++.||++||.. |++|||+++.......
T Consensus 163 ------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~ 192 (242)
T cd07498 163 ------------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGR 192 (242)
T ss_pred ------------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccc
Confidence 12467899999975 9999999998875432
Q ss_pred CCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004010 533 VGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586 (779)
Q Consensus 533 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~T 586 (779)
.. ..+.....|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 193 ~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 193 GS----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cc----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 11 011122378999999999999999999999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-40 Score=354.84 Aligned_cols=268 Identities=29% Similarity=0.349 Sum_probs=184.1
Q ss_pred cCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCC
Q 004010 127 SESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGI 206 (779)
Q Consensus 127 ~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~ 206 (779)
..+++|+||+|||||||||.+||+|.+.. +..++|..
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~---------------- 38 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVG---------------- 38 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCC----------------
Confidence 35789999999999999999999997531 11111211
Q ss_pred CCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCc
Q 004010 207 NETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVD 286 (779)
Q Consensus 207 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvd 286 (779)
...+.|..||||||||||+|+..+. ...||||+|+|+.+|++.....+..+++++||+||++.|++
T Consensus 39 -----~~~~~d~~gHGT~VAgiiag~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~ 104 (297)
T cd07480 39 -----GEDVQDGHGHGTHCAGTIFGRDVPG---------PRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGAD 104 (297)
T ss_pred -----CCCCCCCCCcHHHHHHHHhcccCCC---------cccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCC
Confidence 0124678999999999999976432 23699999999999999876357778899999999999999
Q ss_pred EEEeccCCCCC------C-CCCCCCCHHHHHHHHH---------------hcCCcEEEEccCCCCCCCCccc-----cCC
Q 004010 287 VISISIGGGDG------I-SSPYYLDPIAIGSYGA---------------ASRGVFVSSSAGNDGPNGMSVT-----NLA 339 (779)
Q Consensus 287 VIn~SlG~~~g------~-~~~~~~d~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~~ 339 (779)
|||||||.... + ........+......+ .++|++||+||||++....... ...
T Consensus 105 Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~ 184 (297)
T cd07480 105 VISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAAC 184 (297)
T ss_pred EEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcccc
Confidence 99999998520 0 0000111222222223 6899999999999986533211 111
Q ss_pred CceEEeccCccCcceeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCC
Q 004010 340 PWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGS 419 (779)
Q Consensus 340 p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~ 419 (779)
+++++|++
T Consensus 185 ~~~~~V~~------------------------------------------------------------------------ 192 (297)
T cd07480 185 PSAMGVAA------------------------------------------------------------------------ 192 (297)
T ss_pred ccccEEEE------------------------------------------------------------------------
Confidence 12222221
Q ss_pred CchhhHHHHHHHcCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccc
Q 004010 420 SPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVA 499 (779)
Q Consensus 420 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a 499 (779)
|... +...
T Consensus 193 -----------------------------------------V~~~-------------------------------~~~~ 200 (297)
T cd07480 193 -----------------------------------------VGAL-------------------------------GRTG 200 (297)
T ss_pred -----------------------------------------ECCC-------------------------------CCCC
Confidence 1100 1222
Q ss_pred cccCCCCCCCCCCCCCCeEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHH
Q 004010 500 SFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAI 579 (779)
Q Consensus 500 ~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~I 579 (779)
.|+++.+. ...||||+|||.+|+++++.. .|..++|||||||+|||++|||+|++|++++.++
T Consensus 201 ~~~~~~~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~ 263 (297)
T cd07480 201 NFSAVANF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRAL 263 (297)
T ss_pred CccccCCC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHH
Confidence 33333332 235789999999999988765 7999999999999999999999999999999998
Q ss_pred HHHHHhccccccCCCCCCCccCCCCCCCCCccCCCccccc
Q 004010 580 RSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLD 619 (779)
Q Consensus 580 k~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 619 (779)
+.+|+......... .......+.++|+|++++.
T Consensus 264 ~~~l~~~l~~~~~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 264 AALLQARLTAARTT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHhhcccC-------CCCCCCChhhcCCceeecC
Confidence 88887433221100 0122345568999999875
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-40 Score=348.42 Aligned_cols=247 Identities=21% Similarity=0.247 Sum_probs=173.7
Q ss_pred cCCccCCC-CCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCC
Q 004010 123 QGLWSESD-YGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGP 201 (779)
Q Consensus 123 ~~~~~~~~-~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~ 201 (779)
..+|+... .|+||+|+|||+|||.+||+|.++... +..
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~----------- 43 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LIS----------- 43 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccC-----------
Confidence 35787744 489999999999999999999753110 000
Q ss_pred CCCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhh
Q 004010 202 IGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV 281 (779)
Q Consensus 202 ~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~ 281 (779)
...+.|+++|||||||||+|..+ + +| +.||||+|+|+.+|+++ .++++++|++|+
T Consensus 44 ----------~~~~~d~~gHGT~VAGiIaa~~n-~---~G-----~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~ 98 (277)
T cd04843 44 ----------GLTDQADSDHGTAVLGIIVAKDN-G---IG-----VTGIAHGAQAAVVSSTR------VSNTADAILDAA 98 (277)
T ss_pred ----------CCCCCCCCCCcchhheeeeeecC-C---Cc-----eeeeccCCEEEEEEecC------CCCHHHHHHHHH
Confidence 01145778999999999998632 1 12 37999999999999985 234556666666
Q ss_pred h----CCCcEEEeccCCCCCCCCC---CCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCccc-------------cCCCc
Q 004010 282 N----DGVDVISISIGGGDGISSP---YYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVT-------------NLAPW 341 (779)
Q Consensus 282 ~----~gvdVIn~SlG~~~g~~~~---~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~ 341 (779)
+ .++.+||||||........ .....+..++.++.++|++||+||||++....... ...|+
T Consensus 99 ~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (277)
T cd04843 99 DYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSG 178 (277)
T ss_pred hccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCC
Confidence 5 4567899999986210110 12234556777888999999999999986532110 12245
Q ss_pred eEEeccCccCcceeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCc
Q 004010 342 IVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSP 421 (779)
Q Consensus 342 vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~ 421 (779)
+|+|||.+.+.
T Consensus 179 vI~VgA~~~~~--------------------------------------------------------------------- 189 (277)
T cd04843 179 AIMVGAGSSTT--------------------------------------------------------------------- 189 (277)
T ss_pred eEEEEeccCCC---------------------------------------------------------------------
Confidence 66666532100
Q ss_pred hhhHHHHHHHcCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccc
Q 004010 422 RVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASF 501 (779)
Q Consensus 422 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~f 501 (779)
...++.|
T Consensus 190 -------------------------------------------------------------------------~~~~~~f 196 (277)
T cd04843 190 -------------------------------------------------------------------------GHTRLAF 196 (277)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 0137899
Q ss_pred cCCCCCCCCCCCCCCeEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHh----h-CCCCCH
Q 004010 502 SARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS----A-HPDWSP 576 (779)
Q Consensus 502 Ss~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~sp 576 (779)
|++|+.. ||.|||++|+++........ .......|..++|||||||||||++|||++ + +|+|+|
T Consensus 197 Sn~G~~v--------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~ 265 (277)
T cd04843 197 SNYGSRV--------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTP 265 (277)
T ss_pred cCCCCcc--------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 9999975 99999999999987643110 011112457899999999999999999975 3 499999
Q ss_pred HHHHHHHHhccc
Q 004010 577 AAIRSAMMTTAS 588 (779)
Q Consensus 577 ~~Ik~~L~~TA~ 588 (779)
+|||++|+.|++
T Consensus 266 ~~v~~~L~~t~~ 277 (277)
T cd04843 266 IEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHhcCC
Confidence 999999999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.9e-40 Score=344.26 Aligned_cols=250 Identities=32% Similarity=0.430 Sum_probs=190.3
Q ss_pred CCcEEEEEecCCCCCCCCcccCCCCCCCCccee---eeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCc
Q 004010 133 SDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKG---VCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINET 209 (779)
Q Consensus 133 ~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g---~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~ 209 (779)
+||+|||||||||++||+|.+. .|.. .+..+.+.. ....+.. ..+|+. .
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~--------------~ 53 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD----GNGYVDD---IYGWNF--------------V 53 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC----CCCcccC---CCcccc--------------c
Confidence 6899999999999999999864 2221 111111110 0000000 001111 1
Q ss_pred cccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEE
Q 004010 210 VEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVIS 289 (779)
Q Consensus 210 ~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn 289 (779)
.....+.|..+|||||||||+|...+... +.|+||+|+|+.+|++.....++..+++++|++|++.+++|||
T Consensus 54 ~~~~~~~d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin 125 (259)
T cd07473 54 NNDNDPMDDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIIN 125 (259)
T ss_pred CCCCCCCCCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEE
Confidence 12345678899999999999998654322 4799999999999999887338888999999999999999999
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCC---Ccccc--CCCceEEeccCccCcceeeEEEeCCCe
Q 004010 290 ISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG---MSVTN--LAPWIVTVGAGTIDRNFPAEVRLGDGR 364 (779)
Q Consensus 290 ~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgAst~d~~~~~~~~l~~g~ 364 (779)
+|||... ....+..++.++.++|++||+||||+|... ..++. ..|++|+||+.+.
T Consensus 126 ~S~G~~~------~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~-------------- 185 (259)
T cd07473 126 NSWGGGG------PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS-------------- 185 (259)
T ss_pred eCCCCCC------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC--------------
Confidence 9999872 256777888889999999999999998762 23332 3478888887321
Q ss_pred EEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCC
Q 004010 365 RLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (779)
Q Consensus 365 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (779)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCc
Q 004010 445 NGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVN 524 (779)
Q Consensus 445 ~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~ 524 (779)
.+.++.||++||.. ||+.|||.+
T Consensus 186 --------------------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~ 208 (259)
T cd07473 186 --------------------------------------------------NDALASFSNYGKKT-------VDLAAPGVD 208 (259)
T ss_pred --------------------------------------------------CCCcCcccCCCCCC-------cEEEeccCC
Confidence 12456799999863 599999999
Q ss_pred EEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004010 525 ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (779)
Q Consensus 525 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 588 (779)
+++..+.. .|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 209 ~~~~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 209 ILSTSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred eEeccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99976554 7999999999999999999999999999999999999999985
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.4e-39 Score=336.31 Aligned_cols=227 Identities=36% Similarity=0.501 Sum_probs=186.1
Q ss_pred CcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccC
Q 004010 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (779)
Q Consensus 134 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 213 (779)
||+|||||+||+++||+|.+. ++..++|... .. .
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~------------------~~-~ 34 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD------------------DN-N 34 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC------------------CC-C
Confidence 799999999999999999753 1112222220 00 2
Q ss_pred CCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEEeccC
Q 004010 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (779)
Q Consensus 214 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (779)
...|..+|||||||+|++..... .+.|+||+|+|+.+|+++....+...++++++++|++.|++|||||||
T Consensus 35 ~~~~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g 105 (229)
T cd07477 35 DYQDGNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLG 105 (229)
T ss_pred CCCCCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence 44578899999999999975432 248999999999999998773367789999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCcc--ccCCCceEEeccCccCcceeeEEEeCCCeEEEeEEe
Q 004010 294 GGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV--TNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSL 371 (779)
Q Consensus 294 ~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 371 (779)
... ....+..++..+.++|+++|+||||++...... ++..|++|+||+.+.+
T Consensus 106 ~~~------~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------- 159 (229)
T cd07477 106 GPS------DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------- 159 (229)
T ss_pred cCC------CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------
Confidence 872 234566677788899999999999999876664 7888999999984321
Q ss_pred ecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCcccc
Q 004010 372 YAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVG 451 (779)
Q Consensus 372 ~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 451 (779)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeecC
Q 004010 452 DAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTE 531 (779)
Q Consensus 452 ~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 531 (779)
+.++.||++|+.. |+.|||.+|+++++.
T Consensus 160 --------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~ 187 (229)
T cd07477 160 --------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN 187 (229)
T ss_pred --------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC
Confidence 1456899999864 999999999999876
Q ss_pred CCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004010 532 AVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586 (779)
Q Consensus 532 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~T 586 (779)
. .|..++|||||||+|||++|||+|++|+++|.+||++|++|
T Consensus 188 ~-------------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 N-------------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred C-------------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 5 78999999999999999999999999999999999999986
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.7e-40 Score=339.79 Aligned_cols=159 Identities=24% Similarity=0.249 Sum_probs=118.4
Q ss_pred CCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccc
Q 004010 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (779)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (779)
+++|+|||||||||++||+|.+. ++..+.|...... + ...
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~-----------~~~ 41 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G-----------NKV 41 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c-----------ccC
Confidence 78999999999999999999742 2222222221000 0 000
Q ss_pred cCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCC------CCCHHHHHHHHHHhhhCCC
Q 004010 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA------GCFDSDILAAFDAAVNDGV 285 (779)
Q Consensus 212 ~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~s~i~~ai~~A~~~gv 285 (779)
.....|..||||||||||+ |+||+|+|+.+|+++... .++..++++||+||+++|+
T Consensus 42 ~~~~~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~ga 103 (247)
T cd07491 42 SPYYVSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKV 103 (247)
T ss_pred CCCCCCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCC
Confidence 1123578899999999996 789999999999998752 2456789999999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCC-c--cccCCCceEEeccC
Q 004010 286 DVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM-S--VTNLAPWIVTVGAG 348 (779)
Q Consensus 286 dVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~--~~~~~p~vitVgAs 348 (779)
||||||||.............+..++.+|.++|++||+||||+|.... + .+...|++|+|||.
T Consensus 104 dIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 104 DIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred cEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 999999998721111112567788888999999999999999998764 3 34567899999984
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.7e-39 Score=347.11 Aligned_cols=108 Identities=34% Similarity=0.373 Sum_probs=85.0
Q ss_pred CCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEEecc
Q 004010 213 MSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISI 292 (779)
Q Consensus 213 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~Sl 292 (779)
....|..||||||||+|+|+.. ..||||+|+|+.+|+++........+++++|++|++++++||||||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~ 114 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSL 114 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 3456789999999999998632 1499999999999999887234888999999999999999999999
Q ss_pred CCCCCCCC-----CCCCCHHHHHHHHHhcCCcEEEEccCCCCCCC
Q 004010 293 GGGDGISS-----PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG 332 (779)
Q Consensus 293 G~~~g~~~-----~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 332 (779)
|....... ....+.+..++..+.++|++||+||||+|...
T Consensus 115 G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 115 GGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred ccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 97621011 11123456666678899999999999999654
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=4.3e-40 Score=351.03 Aligned_cols=277 Identities=36% Similarity=0.513 Sum_probs=206.9
Q ss_pred EEEEEecCCCCCCCCcc-cCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCC
Q 004010 136 IIGVFDTGIWPERRSFS-DLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMS 214 (779)
Q Consensus 136 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 214 (779)
+|||||||||++||+|. +. + ...++.+.+.|.++. .....
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~-----------------~~~~~ 41 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN-----------------PNPSP 41 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB-----------------STTTS
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC-----------------CCcCc
Confidence 69999999999999997 22 0 012333444444421 11234
Q ss_pred CCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhh-hCCCcEEEeccC
Q 004010 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV-NDGVDVISISIG 293 (779)
Q Consensus 215 ~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~-~~gvdVIn~SlG 293 (779)
..|..+|||||||+|+|.. . .+. ..+.|+||+|+|+.+|+++.. +....+++++|++++ +++++|||||||
T Consensus 42 ~~~~~~HGT~va~ii~~~~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~-~~~~~~~~~ai~~~~~~~~~~Vin~S~G 113 (282)
T PF00082_consen 42 SDDDNGHGTHVAGIIAGNG-G-NNG-----PGINGVAPNAKLYSYKIFDNS-GGTSSDLIEAIEYAVKNDGVDVINLSFG 113 (282)
T ss_dssp SSTSSSHHHHHHHHHHHTT-S-SSS-----SSETCSSTTSEEEEEECSSTT-SEEHHHHHHHHHHHHHHTTSSEEEECEE
T ss_pred cccCCCccchhhhhccccc-c-ccc-----ccccccccccccccccccccc-ccccccccchhhhhhhccCCcccccccc
Confidence 5678899999999999986 2 111 123799999999999998877 577888999999999 899999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCc---cccCCCceEEeccCccCcceeeEEEeCCCeEEEeEE
Q 004010 294 GGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS---VTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVS 370 (779)
Q Consensus 294 ~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 370 (779)
...+...+...+.+..+...+.++|+++|+||||+|+.... .+...+++|+||+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~-------------------- 173 (282)
T PF00082_consen 114 SNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN-------------------- 173 (282)
T ss_dssp BEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET--------------------
T ss_pred ccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc--------------------
Confidence 83100112223345556668889999999999999877653 4555678888887321
Q ss_pred eecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccc
Q 004010 371 LYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV 450 (779)
Q Consensus 371 ~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 450 (779)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeec
Q 004010 451 GDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWT 530 (779)
Q Consensus 451 ~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 530 (779)
.+.++.||++|+... .+++||||+|||.+|+++++
T Consensus 174 --------------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~ 208 (282)
T PF00082_consen 174 --------------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVP 208 (282)
T ss_dssp --------------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEET
T ss_pred --------------------------------------------ccccccccccccccc-cccccccccccccccccccc
Confidence 125588999976542 48999999999999998887
Q ss_pred CCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCc
Q 004010 531 EAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYD 610 (779)
Q Consensus 531 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~ 610 (779)
.... ..|..++|||||||+|||++|||+|++|+|++++||.+|++||+++.... .......
T Consensus 209 ~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~ 269 (282)
T PF00082_consen 209 GSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNS 269 (282)
T ss_dssp TTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHH
T ss_pred cccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCC
Confidence 6520 25889999999999999999999999999999999999999999886211 2234458
Q ss_pred cCCCcccccccCC
Q 004010 611 FGAGHVNLDRAMD 623 (779)
Q Consensus 611 ~G~G~vn~~~Al~ 623 (779)
||||+||+.+|++
T Consensus 270 ~G~G~in~~~a~~ 282 (282)
T PF00082_consen 270 YGWGLINAEKALN 282 (282)
T ss_dssp HTTSBE-HHHHHH
T ss_pred ccCChhCHHHHhC
Confidence 8999999999874
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=5.3e-39 Score=345.27 Aligned_cols=250 Identities=23% Similarity=0.198 Sum_probs=179.0
Q ss_pred cCCccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCC
Q 004010 123 QGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPI 202 (779)
Q Consensus 123 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 202 (779)
..+|+.+++|+||+|+|||||||++||+|.+.... ...+.|..+.
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~---------- 73 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND---------- 73 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC----------
Confidence 46899999999999999999999999999753210 0111122110
Q ss_pred CCCCCCccccCCC--CCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHh
Q 004010 203 GGGINETVEFMSP--RDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAA 280 (779)
Q Consensus 203 ~~~~~~~~~~~~~--~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A 280 (779)
....+ .|..||||||||||+|+..+.. ...||||+|+|+.+|+++.. .....+..++.++
T Consensus 74 --------~~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~ 135 (297)
T cd04059 74 --------PDPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLN 135 (297)
T ss_pred --------CCCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc--cccHHHHHHHhcc
Confidence 00112 2788999999999999854321 13799999999999998764 3444556666666
Q ss_pred hhCCCcEEEeccCCCCCCC-CCCCCCHHHHHHHHHhc-----CCcEEEEccCCCCCCCCc----cccCCCceEEeccCcc
Q 004010 281 VNDGVDVISISIGGGDGIS-SPYYLDPIAIGSYGAAS-----RGVFVSSSAGNDGPNGMS----VTNLAPWIVTVGAGTI 350 (779)
Q Consensus 281 ~~~gvdVIn~SlG~~~g~~-~~~~~d~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgAst~ 350 (779)
.+ .++|||||||...... ..........++.++.+ +|++||+||||+|..... .....|++|+|||.+.
T Consensus 136 ~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~ 214 (297)
T cd04059 136 PD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA 214 (297)
T ss_pred cC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC
Confidence 54 4699999999763111 01112233344444443 699999999999973221 2245678888887322
Q ss_pred CcceeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHH
Q 004010 351 DRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVK 430 (779)
Q Consensus 351 d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 430 (779)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCC
Q 004010 431 KAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLN 510 (779)
Q Consensus 431 ~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~ 510 (779)
.+.++.||++|+..
T Consensus 215 ----------------------------------------------------------------~g~~~~~s~~g~~~-- 228 (297)
T cd04059 215 ----------------------------------------------------------------NGVRASYSEVGSSV-- 228 (297)
T ss_pred ----------------------------------------------------------------CCCCcCCCCCCCcE--
Confidence 12567899999986
Q ss_pred CCCCCCeEEeCCCc-------EEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHH
Q 004010 511 PEILKPDLIAPGVN-------ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAM 583 (779)
Q Consensus 511 ~~~lKPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L 583 (779)
++.|||.. |+++..... ...|..++|||||||+|||++|||+|+||+|++.|||++|
T Consensus 229 ------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L 292 (297)
T cd04059 229 ------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHIL 292 (297)
T ss_pred ------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHH
Confidence 89999987 666654420 1267899999999999999999999999999999999999
Q ss_pred Hhccc
Q 004010 584 MTTAS 588 (779)
Q Consensus 584 ~~TA~ 588 (779)
++||+
T Consensus 293 ~~TA~ 297 (297)
T cd04059 293 ALTAR 297 (297)
T ss_pred HHhcC
Confidence 99985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-38 Score=326.17 Aligned_cols=222 Identities=24% Similarity=0.318 Sum_probs=173.1
Q ss_pred CcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccC
Q 004010 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (779)
Q Consensus 134 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 213 (779)
||+|||||||||++||+|.+.-.. .+.+..+ .. ..+..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~-~~--------------~~~~~ 38 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL-EI--------------IVVSA 38 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc-cc--------------ccCCC
Confidence 799999999999999999753110 0011000 00 01113
Q ss_pred CCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEEeccC
Q 004010 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (779)
Q Consensus 214 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (779)
...|..||||||||||++ .+|+++|+.+|+++....+..+++++||+||+++|++|||||||
T Consensus 39 ~~~d~~gHGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 39 EGGDKDGHGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCCCCCcHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 456789999999999984 46999999999998873488889999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCccccCCCceEEeccCccCcceeeEEEeCCCeEEEeEEeec
Q 004010 294 GGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYA 373 (779)
Q Consensus 294 ~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~ 373 (779)
.. .. .....+..++.++.++|+++|+||||++..... +...|.+|+|++...++
T Consensus 101 ~~---~~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 101 GP---GD-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CC---CC-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC---------------------
Confidence 87 22 233566777788889999999999999875433 66778889888732111
Q ss_pred CCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccCC
Q 004010 374 GAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDA 453 (779)
Q Consensus 374 ~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 453 (779)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeecCCC
Q 004010 454 HLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAV 533 (779)
Q Consensus 454 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 533 (779)
..+ .+++ ++|+.|||.+|+++++.+
T Consensus 155 -------------------------------------------~~~---~~~~--------~~~~~apg~~i~~~~~~~- 179 (222)
T cd07492 155 -------------------------------------------PKS---FWYI--------YVEFSADGVDIIAPAPHG- 179 (222)
T ss_pred -------------------------------------------Ccc---cccC--------CceEEeCCCCeEeecCCC-
Confidence 011 1122 359999999999998764
Q ss_pred CCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004010 534 GPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (779)
Q Consensus 534 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 588 (779)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 ------------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ------------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ------------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1.5e-37 Score=328.43 Aligned_cols=246 Identities=32% Similarity=0.398 Sum_probs=184.6
Q ss_pred CCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCcc
Q 004010 131 YGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETV 210 (779)
Q Consensus 131 ~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~ 210 (779)
+|+||+|+|||+||+++||+|.+..... ..+.... ..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~----------------~~ 37 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVN----------------DA 37 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------ccccccc----------------cc
Confidence 5999999999999999999998642110 0000000 00
Q ss_pred ccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCC-CCCHHHHHHHHHHhhhCCCcEEE
Q 004010 211 EFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA-GCFDSDILAAFDAAVNDGVDVIS 289 (779)
Q Consensus 211 ~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~s~i~~ai~~A~~~gvdVIn 289 (779)
......|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++... .+....+.++++++++.+++|||
T Consensus 38 ~~~~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin 108 (267)
T cd04848 38 GYASNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIIN 108 (267)
T ss_pred cCCCCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEE
Confidence 0123457889999999999998643 2247999999999999998763 25667788999999999999999
Q ss_pred eccCCCCCCCC---------CCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCcc---------ccCCCceEEeccCccC
Q 004010 290 ISIGGGDGISS---------PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV---------TNLAPWIVTVGAGTID 351 (779)
Q Consensus 290 ~SlG~~~g~~~---------~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgAst~d 351 (779)
||||....... ....+.+......+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 109 ~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~ 188 (267)
T cd04848 109 NSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN 188 (267)
T ss_pred ccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC
Confidence 99998731110 01345566777788999999999999998654332 2345677888774321
Q ss_pred cceeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHH
Q 004010 352 RNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKK 431 (779)
Q Consensus 352 ~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 431 (779)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (267)
T cd04848 189 G------------------------------------------------------------------------------- 189 (267)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCcccc--ccCCCCCCC
Q 004010 432 AGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVAS--FSARGPNGL 509 (779)
Q Consensus 432 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~--fSs~Gp~~~ 509 (779)
.... ||++|+...
T Consensus 190 -----------------------------------------------------------------~~~~~~~s~~~~~~~ 204 (267)
T cd04848 190 -----------------------------------------------------------------TIASYSYSNRCGVAA 204 (267)
T ss_pred -----------------------------------------------------------------Ccccccccccchhhh
Confidence 2233 488887532
Q ss_pred CCCCCCCeEEeCCCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004010 510 NPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (779)
Q Consensus 510 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 588 (779)
.++++|||.+|+++.+.... .|..++|||||||+|||++||++|++|+++++|||++|++||+
T Consensus 205 -----~~~~~apG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 205 -----NWCLAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -----hheeecCcCceeecccCCCC-----------cccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 45799999999998773111 7889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=323.33 Aligned_cols=350 Identities=26% Similarity=0.407 Sum_probs=262.9
Q ss_pred CceEEEEeCCCCCCCCCcchHHHHHhhhCCC----------ceeEEEecceeeEEEEEeCH-----HHHHHHhCCCCeEE
Q 004010 35 VKTFIFRIDSQSKPSIFPTHYHWYSSEFASP----------VQILHTYDTVFHGFSATLSP-----DQAASLSRHPSVLA 99 (779)
Q Consensus 35 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~y~~~~~g~s~~l~~-----~~~~~L~~~p~V~~ 99 (779)
+..|||.|+.... ...++..+++.+... ...-..|...|.-+-++-.. -++++|..+|.|+.
T Consensus 49 e~EyIv~F~~y~~---Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~ 125 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP---AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKV 125 (1033)
T ss_pred cceeEEEeccccc---chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCcee
Confidence 6789999997653 234677777777632 22334455555555554332 35789999999999
Q ss_pred EEEcceeccccc------------CCCcc------------------cCC-----c-------cccCCccCCCCCCCcEE
Q 004010 100 VIEDQRRQLHTT------------RSPQF------------------LGL-----R-------NQQGLWSESDYGSDVII 137 (779)
Q Consensus 100 V~~~~~~~~~~~------------~s~~~------------------~g~-----~-------~~~~~~~~~~~G~gv~V 137 (779)
|.|.+.+.+-.. +.-.+ ++- . .++-+|..+++|++|+|
T Consensus 126 v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vkv 205 (1033)
T KOG4266|consen 126 VFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKV 205 (1033)
T ss_pred ecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEE
Confidence 999987765210 00000 000 0 01248999999999999
Q ss_pred EEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCCCCC
Q 004010 138 GVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSPRD 217 (779)
Q Consensus 138 gVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 217 (779)
||+|||+..+||.|+.-.. ...| .. ..+-.|
T Consensus 206 AiFDTGl~~~HPHFrnvKE---RTNW-------------------------TN---------------------E~tLdD 236 (1033)
T KOG4266|consen 206 AIFDTGLRADHPHFRNVKE---RTNW-------------------------TN---------------------EDTLDD 236 (1033)
T ss_pred EEeecccccCCccccchhh---hcCC-------------------------cC---------------------cccccc
Confidence 9999999999999974210 0011 10 134567
Q ss_pred CCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEEeccCCCCC
Q 004010 218 ADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIGGGDG 297 (779)
Q Consensus 218 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG~~~g 297 (779)
..||||.|||+|||... -.|.||+++|+++|||-+..-.+.+++++|+.||+....||+|+|+|++
T Consensus 237 ~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP-- 302 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP-- 302 (1033)
T ss_pred CcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--
Confidence 89999999999998742 2699999999999999887458899999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCccccCCC--ceEEeccCccCcceeeEEEeCCCeEEEeEEeecCC
Q 004010 298 ISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAP--WIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGA 375 (779)
Q Consensus 298 ~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~ 375 (779)
++.+.|+-.-+.....++|++|.|+||+||-.++..|.+. .|+.||.
T Consensus 303 ---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG---------------------------- 351 (1033)
T KOG4266|consen 303 ---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG---------------------------- 351 (1033)
T ss_pred ---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc----------------------------
Confidence 3677788888888899999999999999998887766443 2333322
Q ss_pred CCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccCCcc
Q 004010 376 PLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHL 455 (779)
Q Consensus 376 ~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 455 (779)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCC----CCCCCCCeEEeCCCcEEeeecC
Q 004010 456 LPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGL----NPEILKPDLIAPGVNILAAWTE 531 (779)
Q Consensus 456 ~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~ 531 (779)
.+..+.+|.|||||-+.. ..+++||||++.|.+|...-..
T Consensus 352 ------------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~ 395 (1033)
T KOG4266|consen 352 ------------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS 395 (1033)
T ss_pred ------------------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc
Confidence 112348899999997542 3589999999999999876544
Q ss_pred CCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCC
Q 004010 532 AVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS----AHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNAST 607 (779)
Q Consensus 532 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 607 (779)
. +...+||||.|+|.|||+++||.+ +.--++|+.+|++|+..|.++.. ..
T Consensus 396 ~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg-------------~N 449 (1033)
T KOG4266|consen 396 T-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG-------------PN 449 (1033)
T ss_pred c-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------Cc
Confidence 3 678999999999999999999976 23347999999999999999853 34
Q ss_pred CCccCCCcccccccCC
Q 004010 608 PYDFGAGHVNLDRAMD 623 (779)
Q Consensus 608 ~~~~G~G~vn~~~Al~ 623 (779)
-|+||+|++|+.++.+
T Consensus 450 MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 450 MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred hhhccCcchhHHHHHH
Confidence 4799999999988765
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-32 Score=283.35 Aligned_cols=195 Identities=24% Similarity=0.224 Sum_probs=140.0
Q ss_pred CCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHh--hhCCCcEEEecc
Q 004010 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAA--VNDGVDVISISI 292 (779)
Q Consensus 215 ~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A--~~~gvdVIn~Sl 292 (779)
..|.+||||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~----~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI----KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC----CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457899999999999997 3677999998755521 1233466778888 667999999999
Q ss_pred CCCCCCCCC-----CCCCHHHHHHHHHhcC-CcEEEEccCCCCCCC-----CccccCCCceEEeccCccCcceeeEEEeC
Q 004010 293 GGGDGISSP-----YYLDPIAIGSYGAASR-GVFVSSSAGNDGPNG-----MSVTNLAPWIVTVGAGTIDRNFPAEVRLG 361 (779)
Q Consensus 293 G~~~g~~~~-----~~~d~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgAst~d~~~~~~~~l~ 361 (779)
|... ... ...+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.......
T Consensus 94 G~~~--~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~------- 164 (247)
T cd07488 94 GEGL--KRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR------- 164 (247)
T ss_pred ccCC--CCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc-------
Confidence 9873 111 1223456666666665 999999999999753 2334567889999984321100
Q ss_pred CCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEec
Q 004010 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (779)
Q Consensus 362 ~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 441 (779)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeC
Q 004010 442 GISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAP 521 (779)
Q Consensus 442 ~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 521 (779)
-..+.||++|-.....+..||||+||
T Consensus 165 ------------------------------------------------------~~~s~~sn~~~~~~~~~~~~~di~AP 190 (247)
T cd07488 165 ------------------------------------------------------FFASDVSNAGSEINSYGRRKVLIVAP 190 (247)
T ss_pred ------------------------------------------------------ceecccccccCCCCCCCCceeEEEEe
Confidence 02345666543222347789999999
Q ss_pred CCcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 004010 522 GVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP------AAIRSAMMTT 586 (779)
Q Consensus 522 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp------~~Ik~~L~~T 586 (779)
|++|++ +.+ .|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 191 G~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 191 GSNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 999998 322 6889999999999999999999999887664 4566666655
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=297.95 Aligned_cols=240 Identities=28% Similarity=0.357 Sum_probs=181.6
Q ss_pred CCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCC--CCHHHHHHHHHHhhhCCCcEEEeccCCC
Q 004010 218 ADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGVDVISISIGGG 295 (779)
Q Consensus 218 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~s~i~~ai~~A~~~gvdVIn~SlG~~ 295 (779)
..-|||||||||+|+...... ..||||+|+|+++++-+..-| .+...+..|+..+++..+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 356999999999999765422 369999999999999776533 4556788999999999999999999988
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCcEEEEccCCCCCCCCcccc---CCCceEEeccCccCcceeeEEEeCCCeEEEeEEee
Q 004010 296 DGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTN---LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLY 372 (779)
Q Consensus 296 ~g~~~~~~~d~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~ 372 (779)
. ..+.....+...-..+.++||++|.||||+||...+++. ....+|.|||.-....
T Consensus 381 a--~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~m------------------- 439 (1304)
T KOG1114|consen 381 A--HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGM------------------- 439 (1304)
T ss_pred C--CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHH-------------------
Confidence 5 455555666666666678999999999999998776653 3346777777211000
Q ss_pred cCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccC
Q 004010 373 AGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD 452 (779)
Q Consensus 373 ~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 452 (779)
....|.+.
T Consensus 440 -----m~a~y~~~------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 440 -----MQAEYSVR------------------------------------------------------------------- 447 (1304)
T ss_pred -----HHhhhhhh-------------------------------------------------------------------
Confidence 00000000
Q ss_pred CcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCCCcEEeeecCC
Q 004010 453 AHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEA 532 (779)
Q Consensus 453 ~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 532 (779)
.+-......+|||||+.+ |-+-..|.|||+.|.+.-.-.
T Consensus 448 ---------------------------------------e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsVP~~t 486 (1304)
T KOG1114|consen 448 ---------------------------------------EPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASVPQYT 486 (1304)
T ss_pred ---------------------------------------ccCCCCccccccCCCCcC--CCcceEEecCCccccCCchhh
Confidence 011235778999999986 899999999999986642111
Q ss_pred CCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCC
Q 004010 533 VGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS----AHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTP 608 (779)
Q Consensus 533 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~ 608 (779)
. ..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.++.+ -.+
T Consensus 487 l-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~-------------id~ 542 (1304)
T KOG1114|consen 487 L-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD-------------IDS 542 (1304)
T ss_pred h-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc-------------cch
Confidence 0 1457899999999999999999965 56789999999999999998853 256
Q ss_pred CccCCCcccccccCC
Q 004010 609 YDFGAGHVNLDRAMD 623 (779)
Q Consensus 609 ~~~G~G~vn~~~Al~ 623 (779)
|.+|.|++++.+|.+
T Consensus 543 faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 543 FAQGQGMLQVDKAYE 557 (1304)
T ss_pred hccCcceeehhHHHH
Confidence 899999999999975
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.1e-30 Score=270.61 Aligned_cols=197 Identities=41% Similarity=0.571 Sum_probs=158.2
Q ss_pred CCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhh-hCCCcEEEecc
Q 004010 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV-NDGVDVISISI 292 (779)
Q Consensus 214 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~-~~gvdVIn~Sl 292 (779)
...+..+||||||++|++...... ..|+||+++|+.+|+...........+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 455788999999999999864432 16999999999999998762367788999999999 89999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhcC-CcEEEEccCCCCCCCC---ccccCCCceEEeccCccCcceeeEEEeCCCeEEEe
Q 004010 293 GGGDGISSPYYLDPIAIGSYGAASR-GVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSG 368 (779)
Q Consensus 293 G~~~g~~~~~~~d~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g 368 (779)
|... .. ....+...+.++.++ |+++|+|+||.+.... ..+...|++|+||+.+.+.
T Consensus 110 g~~~---~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 110 GGPG---SP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred CCCC---CC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 9872 22 345666677777777 9999999999998776 4778889999999854321
Q ss_pred EEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCc
Q 004010 369 VSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG 448 (779)
Q Consensus 369 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 448 (779)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccc-cccCCCCCCCCCCCCCCeEEeCCCcEEe
Q 004010 449 LVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVA-SFSARGPNGLNPEILKPDLIAPGVNILA 527 (779)
Q Consensus 449 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~s 527 (779)
... .++++|+ |||+.|||.++..
T Consensus 170 ------------------------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~ 193 (241)
T cd00306 170 ------------------------------------------------TPASPSSNGGA--------GVDIAAPGGDILS 193 (241)
T ss_pred ------------------------------------------------CccCCcCCCCC--------CceEEeCcCCccC
Confidence 111 3444444 5699999999987
Q ss_pred eecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004010 528 AWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586 (779)
Q Consensus 528 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~T 586 (779)
..... ...|..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 194 ~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 194 SPTTG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cccCC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 51111 1279999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.5e-23 Score=236.24 Aligned_cols=251 Identities=36% Similarity=0.470 Sum_probs=185.3
Q ss_pred cCCccC--CCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCC
Q 004010 123 QGLWSE--SDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAG 200 (779)
Q Consensus 123 ~~~~~~--~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~ 200 (779)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++|....
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 357777 89999999999999999999999754210 01122210
Q ss_pred CCCCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCC-CCCCHHHHHHHHHH
Q 004010 201 PIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKN-AGCFDSDILAAFDA 279 (779)
Q Consensus 201 ~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-~g~~~s~i~~ai~~ 279 (779)
......|..+|||||++++++....+ .....|+||+++++.+|++... +....++++.+|++
T Consensus 175 ----------~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 237 (508)
T COG1404 175 ----------PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEG 237 (508)
T ss_pred ----------CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHH
Confidence 00124688999999999999842111 1124799999999999999865 34677788999999
Q ss_pred hhhCC--CcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCC-cEEEEccCCCCCCCCc----cccCC--CceEEeccCcc
Q 004010 280 AVNDG--VDVISISIGGGDGISSPYYLDPIAIGSYGAASRG-VFVSSSAGNDGPNGMS----VTNLA--PWIVTVGAGTI 350 (779)
Q Consensus 280 A~~~g--vdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVgAst~ 350 (779)
++..+ +++||||+|.. ........+..++..++..| +++|+|+||.+..... .+... +.+++|+|...
T Consensus 238 ~~~~~~~~~~in~s~g~~---~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~ 314 (508)
T COG1404 238 AANLGGPADVINLSLGGS---LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314 (508)
T ss_pred HHhcCCCCcEEEecCCCC---ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC
Confidence 99999 99999999975 12233455666666777777 9999999999976521 11111 24455544211
Q ss_pred CcceeeEEEeCCCeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHH
Q 004010 351 DRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVK 430 (779)
Q Consensus 351 d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 430 (779)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCC
Q 004010 431 KAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLN 510 (779)
Q Consensus 431 ~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~ 510 (779)
.+.++.||++|+..
T Consensus 315 ----------------------------------------------------------------~~~~~~~s~~g~~~-- 328 (508)
T COG1404 315 ----------------------------------------------------------------SDTVASFSNDGSPT-- 328 (508)
T ss_pred ----------------------------------------------------------------CCccccccccCCCC--
Confidence 13678899999851
Q ss_pred CCCCCCeEEeCCCcEEe-----eecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCC-CCCHHHHHHHHH
Q 004010 511 PEILKPDLIAPGVNILA-----AWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP-DWSPAAIRSAMM 584 (779)
Q Consensus 511 ~~~lKPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~Ik~~L~ 584 (779)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+.
T Consensus 329 ----~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~ 393 (508)
T COG1404 329 ----GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIV 393 (508)
T ss_pred ----CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHh
Confidence 2399999999988 444431 1499999999999999999999999999 899999999988
Q ss_pred hcccc
Q 004010 585 TTASI 589 (779)
Q Consensus 585 ~TA~~ 589 (779)
.++..
T Consensus 394 ~~~~~ 398 (508)
T COG1404 394 TTAGL 398 (508)
T ss_pred hcccc
Confidence 88874
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-22 Score=206.58 Aligned_cols=416 Identities=17% Similarity=0.193 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCceEEEEeCCCCCCCCCc---chHHHHHhhhCCCceeEEEecceeeEEEE---EeCH
Q 004010 12 QFLFFLLLSGSFLQTRTLSTDQTVKTFIFRIDSQSKPSIFP---THYHWYSSEFASPVQILHTYDTVFHGFSA---TLSP 85 (779)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~~~~~~~yIV~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~y~~~~~g~s~---~l~~ 85 (779)
.|+..+++++|....+.+....-.+.|+|+|+++...+... ..+.+.. .+....-.+.|.-.-+++.- +-+.
T Consensus 8 ~l~a~fl~lf~~~~gag~~~~vftnhflv~l~~g~g~~~ah~va~~hgf~n--rg~~~a~d~eyhf~h~~l~har~rrsl 85 (629)
T KOG3526|consen 8 DLIAVFLSLFCVMIGAGEAVDVFTNHFLVHLKEGGGLEDAHRVAKRHGFIN--RGQVAASDNEYHFVHPALVHARTRRSL 85 (629)
T ss_pred HHHHHHHHHHHHHhccccCcceeeeeEEEEEeccCChHHHHHHHHHhCccc--cccccccCceeeeeccccchhhhhccc
Confidence 34444444555544444454555789999999986533110 0011100 01111112334322233322 1122
Q ss_pred HHHHHHhCCCCeEEEEEcceecccc------------------cCCCccc---------CCc-cccCCccCCCCCCCcEE
Q 004010 86 DQAASLSRHPSVLAVIEDQRRQLHT------------------TRSPQFL---------GLR-NQQGLWSESDYGSDVII 137 (779)
Q Consensus 86 ~~~~~L~~~p~V~~V~~~~~~~~~~------------------~~s~~~~---------g~~-~~~~~~~~~~~G~gv~V 137 (779)
..-++|.++|.|+.+.+..-+.... +..|-.. +++ ++..+|..+++|++|++
T Consensus 86 ~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tgknvtt 165 (629)
T KOG3526|consen 86 GHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGKNVTT 165 (629)
T ss_pred chhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHHhhcccCCCceE
Confidence 3456788888887776554333210 1111110 010 12358999999999999
Q ss_pred EEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCCCCC
Q 004010 138 GVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSPRD 217 (779)
Q Consensus 138 gVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 217 (779)
+|+|.||||-||++..+ |+ -..+++|... ++.++.-..|
T Consensus 166 aimddgvdymhpdlk~n------------------yn-------aeasydfssn----------------dpfpyprytd 204 (629)
T KOG3526|consen 166 AIMDDGVDYMHPDLKSN------------------YN-------AEASYDFSSN----------------DPFPYPRYTD 204 (629)
T ss_pred EeecCCchhcCcchhcc------------------cC-------ceeecccccC----------------CCCCCCcccc
Confidence 99999999999999631 21 2233444431 0222222223
Q ss_pred --CCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhh-CCCcEEEeccCC
Q 004010 218 --ADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN-DGVDVISISIGG 294 (779)
Q Consensus 218 --~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~-~gvdVIn~SlG~ 294 (779)
.+.|||.|||-+++...++. .| .|||.+.++..+|+++.. +..|+++|-..--+ ...+|.+-|||.
T Consensus 205 dwfnshgtrcagev~aardngi--cg------vgvaydskvagirmldqp---ymtdlieansmghep~kihiysaswgp 273 (629)
T KOG3526|consen 205 DWFNSHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLDQP---YMTDLIEANSMGHEPSKIHIYSASWGP 273 (629)
T ss_pred hhhhccCccccceeeeeccCCc--ee------eeeeeccccceeeecCCc---hhhhhhhhcccCCCCceEEEEecccCc
Confidence 68899999998887765543 34 499999999999999765 66677766443333 367899999998
Q ss_pred CCCCCCCCCCC----HHHHHHHHHhc-----CCcEEEEccCCCCCCCC-ccc--cCCCceEEeccCccCcceeeEEEeCC
Q 004010 295 GDGISSPYYLD----PIAIGSYGAAS-----RGVFVSSSAGNDGPNGM-SVT--NLAPWIVTVGAGTIDRNFPAEVRLGD 362 (779)
Q Consensus 295 ~~g~~~~~~~d----~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~-~~~--~~~p~vitVgAst~d~~~~~~~~l~~ 362 (779)
.. .+-.-| ...+++.+-++ .|-+.|.|.|..|.+-. ... ..+-|.|++-+.-.|
T Consensus 274 td---dgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaind----------- 339 (629)
T KOG3526|consen 274 TD---DGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIND----------- 339 (629)
T ss_pred CC---CCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcC-----------
Confidence 62 222222 22223223232 35678888888775421 111 223355555331111
Q ss_pred CeEEEeEEeecCCCCCCceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEecc
Q 004010 363 GRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANG 442 (779)
Q Consensus 363 g~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 442 (779)
|+. ..-++.|..
T Consensus 340 g~n--------------------------ahydescss------------------------------------------ 351 (629)
T KOG3526|consen 340 GEN--------------------------AHYDESCSS------------------------------------------ 351 (629)
T ss_pred Ccc--------------------------ccccchhhH------------------------------------------
Confidence 100 000111221
Q ss_pred CCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCCCCCCCCCCCeEEeCC
Q 004010 443 ISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPG 522 (779)
Q Consensus 443 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 522 (779)
-..+.||+-|-++.. |
T Consensus 352 -----------------------------------------------------tlastfsng~rnpet-----------g 367 (629)
T KOG3526|consen 352 -----------------------------------------------------TLASTFSNGGRNPET-----------G 367 (629)
T ss_pred -----------------------------------------------------HHHHHhhcCCcCCCc-----------c
Confidence 134568887665431 1
Q ss_pred CcEEeeecCCCCCCCCCCCCccceeEeecCccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC-CCCCCcc-
Q 004010 523 VNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS-NQPMTDE- 600 (779)
Q Consensus 523 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~-~~~~~~~- 600 (779)
+ -.+ +..+.....-||||.|+|-.||+.||.++++|.++..+++.+-.-|..+..-. +.--...
T Consensus 368 v--att------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~ 433 (629)
T KOG3526|consen 368 V--ATT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQ 433 (629)
T ss_pred e--eee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEe
Confidence 1 111 11112456789999999999999999999999999999999887777664311 1100000
Q ss_pred -CCCCCCCCCccCCCcccccccCCCCceecCCchhhhhhhhcCCC
Q 004010 601 -ATGNASTPYDFGAGHVNLDRAMDPGLVYDITNDDYVNFLCANGY 644 (779)
Q Consensus 601 -~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~dy~~~lc~~~~ 644 (779)
......-+.-||+|.+|+.+-+.-..-+...+. .|-|.-|.
T Consensus 434 mngvglefnhlfgfgvldagamv~lak~wktvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 434 MNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPP---RYHCTAGL 475 (629)
T ss_pred ccccceeeecccccccccHHHHHHHHHHhccCCC---ceeecccc
Confidence 111223345789999999887665555555554 34576654
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.73 E-value=1.7e-17 Score=182.32 Aligned_cols=104 Identities=31% Similarity=0.377 Sum_probs=81.5
Q ss_pred ceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhC---CCcEEEeccCCCCCCCCCCCCCHHHHHHHHHhcCCcEEE
Q 004010 246 VAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND---GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVS 322 (779)
Q Consensus 246 ~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~---gvdVIn~SlG~~~g~~~~~~~d~~~~a~~~a~~~Gi~vV 322 (779)
.+.||||+|+|..|+++++. ..+++.++.+++.+ +++|||+|||.........+.+.+..++.+|..+||+||
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEE
Confidence 35899999999999997542 45677888888887 999999999987311111123567777788899999999
Q ss_pred EccCCCCCCCC-----------ccccCCCceEEeccCccCcc
Q 004010 323 SSAGNDGPNGM-----------SVTNLAPWIVTVGAGTIDRN 353 (779)
Q Consensus 323 ~AAGN~G~~~~-----------~~~~~~p~vitVgAst~d~~ 353 (779)
+|+||+|.... ..+...|||++||+++....
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 99999997653 34678999999999877654
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.42 E-value=2.2e-12 Score=120.20 Aligned_cols=122 Identities=55% Similarity=0.931 Sum_probs=99.9
Q ss_pred EEeCCCeEEEeEEeecCCCCCCceEeEEecCCC-CCcccccccCCCCCCCcccccEEEEcCCCC-chhhHHHHHHHcCce
Q 004010 358 VRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKS-GVLSASLCMENSLDPNLVRGKIVICDRGSS-PRVAKGLVVKKAGGV 435 (779)
Q Consensus 358 ~~l~~g~~~~g~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~C~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~Ga~ 435 (779)
++|+||+++.|++++.... ..+++++.... .......|.+..++..+++|||+||+++.| .+.+|..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6799999999999996553 45677764332 334557899888888999999999999999 899999999999999
Q ss_pred EEEEeccCCCCCccccCCcccCeEEEchhhHHHHHHHHhcCCCCeEE
Q 004010 436 GMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTAT 482 (779)
Q Consensus 436 g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~ 482 (779)
|+|++++.............+|++.|+.++|+.|++|++++.+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999887654333333568999999999999999999998776654
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.41 E-value=1.9e-12 Score=123.31 Aligned_cols=116 Identities=29% Similarity=0.413 Sum_probs=94.6
Q ss_pred CceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccccC-CcccC
Q 004010 379 EKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD-AHLLP 457 (779)
Q Consensus 379 ~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~~p 457 (779)
....+++|.+. |....+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+.......... ...+|
T Consensus 25 ~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP 96 (143)
T cd02133 25 GKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIP 96 (143)
T ss_pred CcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEe
Confidence 46788998654 5555566678999999999999999999999999999999999887643222222 35789
Q ss_pred eEEEchhhHHHHHHHHhcCCCCeEEEEecceeecccCCCccccccCCCCC
Q 004010 458 ACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPN 507 (779)
Q Consensus 458 ~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~ 507 (779)
+++|+..+|+.|++|+++ +++|.+..+.. ..+++.++.||||||.
T Consensus 97 ~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 97 VVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred EEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 999999999999999988 67777777655 5678899999999996
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.90 E-value=2.4e-09 Score=91.56 Aligned_cols=73 Identities=33% Similarity=0.582 Sum_probs=56.8
Q ss_pred eEEEEeCCCCCCCC-CcchHHHHHhhhCC--------CceeEEEecceeeEEEEEeCHHHHHHHhCCCCeEEEEEcceec
Q 004010 37 TFIFRIDSQSKPSI-FPTHYHWYSSEFAS--------PVQILHTYDTVFHGFSATLSPDQAASLSRHPSVLAVIEDQRRQ 107 (779)
Q Consensus 37 ~yIV~~~~~~~~~~-~~~~~~~~~~~l~~--------~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 107 (779)
+|||.|++...... ...+.+++.+.+.+ ..++.+.|...||||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999876554 56677777754332 2789999999999999999999999999999999999999988
Q ss_pred cc
Q 004010 108 LH 109 (779)
Q Consensus 108 ~~ 109 (779)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.87 E-value=2.8e-08 Score=91.88 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=77.8
Q ss_pred ceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCC---cccc--CCc
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE---GLVG--DAH 454 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~~~--~~~ 454 (779)
-.-++++... ...+.|.+..+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+..... .+.. ...
T Consensus 17 i~~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 17 VTAPLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred cEEEEEEcCC---CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 3456777432 2347899888877899999999999999999999999999999999998776321 1111 345
Q ss_pred ccCeEEEchhhHHHHHHHHhcCCCCeE
Q 004010 455 LLPACALGSDEGDAVKAYISSTANPTA 481 (779)
Q Consensus 455 ~~p~~~v~~~~g~~l~~~~~~~~~~~~ 481 (779)
.+|+++|+..+|+.|++++.++.+.++
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 699999999999999999988765443
No 48
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.84 E-value=1.3e-08 Score=93.52 Aligned_cols=90 Identities=27% Similarity=0.420 Sum_probs=72.5
Q ss_pred CcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccc----cCCcccCeEEEchhhHH
Q 004010 392 VLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV----GDAHLLPACALGSDEGD 467 (779)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~v~~~~g~ 467 (779)
......|.+.... .+++|||+||+|+.|.+.+|..+++++||.|+|++|+......+. .....+|+++|+..+|+
T Consensus 24 ~~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 24 ASNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred CCcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 3456789888764 459999999999999999999999999999999998876422221 12357999999999999
Q ss_pred HHHHHHhcCCCCeEE
Q 004010 468 AVKAYISSTANPTAT 482 (779)
Q Consensus 468 ~l~~~~~~~~~~~~~ 482 (779)
.|++|++.+...+++
T Consensus 103 ~l~~~l~~g~~v~v~ 117 (118)
T cd04818 103 ALKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHHhcCCcEEEe
Confidence 999999987765443
No 49
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.84 E-value=7.7e-09 Score=92.19 Aligned_cols=92 Identities=28% Similarity=0.378 Sum_probs=70.1
Q ss_pred ceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCC----CCCccccCCcc
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS----NGEGLVGDAHL 455 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~ 455 (779)
...|+|.... ......|.+......+++|||+||+||.|.+.+|..+++++||.|+|++|... ...........
T Consensus 6 ~~~~lV~~~~--~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~ 83 (101)
T PF02225_consen 6 VTGPLVPAGN--GIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPID 83 (101)
T ss_dssp EEEEEEEETT--EEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTB
T ss_pred EEEEEEEecC--CCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcE
Confidence 3456663221 22345677778888999999999999999999999999999999999999221 12233445678
Q ss_pred cCeEEEchhhHHHHHHHH
Q 004010 456 LPACALGSDEGDAVKAYI 473 (779)
Q Consensus 456 ~p~~~v~~~~g~~l~~~~ 473 (779)
+|+++|+..+|+.|++|+
T Consensus 84 iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 84 IPVVFISYEDGEALLAYI 101 (101)
T ss_dssp SEEEEE-HHHHHHHHHHH
T ss_pred EEEEEeCHHHHhhhhccC
Confidence 999999999999999985
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.80 E-value=2.5e-08 Score=93.66 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=73.5
Q ss_pred ccccccCCCC--CCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCC-ccc---cCCcccCeEEEchhhHH
Q 004010 394 SASLCMENSL--DPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE-GLV---GDAHLLPACALGSDEGD 467 (779)
Q Consensus 394 ~~~~C~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~~---~~~~~~p~~~v~~~~g~ 467 (779)
..+.|.+... ++.++.|+|+|++||.|.|.+|..+++++||.++|++|+...+. .+. .....+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4567998776 56789999999999999999999999999999999999886221 221 12347899999999999
Q ss_pred HHHHHHhcCCCCeEE
Q 004010 468 AVKAYISSTANPTAT 482 (779)
Q Consensus 468 ~l~~~~~~~~~~~~~ 482 (779)
.|++++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999988776654
No 51
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.80 E-value=2.8e-08 Score=90.21 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=73.5
Q ss_pred ceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCC--ccc--cCCcc
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE--GLV--GDAHL 455 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~--~~~--~~~~~ 455 (779)
..+|++.. +....|....+.+.+++|||+|++||.|.|.+|..+++++||.++|++|+..... ... .....
T Consensus 20 ~~~~~~~~-----~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNL-----TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecC-----CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCc
Confidence 45666653 3357799888888889999999999999999999999999999999999876311 111 23457
Q ss_pred cCeEEEchhhHHHHHHHHhc
Q 004010 456 LPACALGSDEGDAVKAYISS 475 (779)
Q Consensus 456 ~p~~~v~~~~g~~l~~~~~~ 475 (779)
||+++|+..+|+.|.+.+..
T Consensus 95 IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred ccEEEEeHHHHHHHHHHhcc
Confidence 89999999999999988763
No 52
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.79 E-value=3.2e-08 Score=90.44 Aligned_cols=89 Identities=21% Similarity=0.354 Sum_probs=72.4
Q ss_pred cccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCC-C-cc--cc----CCcccCeEEEchhhH
Q 004010 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG-E-GL--VG----DAHLLPACALGSDEG 466 (779)
Q Consensus 395 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~-~~--~~----~~~~~p~~~v~~~~g 466 (779)
.+.|.+.. .+.+++|||+|++||.|.|.+|..+++++||.++|++|+.... . .+ .. ....||+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798643 3567999999999999999999999999999999999886542 1 11 11 234799999999999
Q ss_pred HHHHHHHhcCCCCeEEEE
Q 004010 467 DAVKAYISSTANPTATID 484 (779)
Q Consensus 467 ~~l~~~~~~~~~~~~~i~ 484 (779)
+.|++.+..+..+++.+.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999888776553
No 53
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.78 E-value=7.4e-08 Score=89.48 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=76.2
Q ss_pred EeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCc-cccCCcccCeEE
Q 004010 382 YPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG-LVGDAHLLPACA 460 (779)
Q Consensus 382 ~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~~ 460 (779)
+|++............|.+.+.+..+++|||+|++||.|.+.+|..+++++||.++|++|+...... ...+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 6766665555566788998766666899999999999999999999999999999999988754221 122333456666
Q ss_pred EchhhHHHHHHHHhcCCCCeE
Q 004010 461 LGSDEGDAVKAYISSTANPTA 481 (779)
Q Consensus 461 v~~~~g~~l~~~~~~~~~~~~ 481 (779)
+ ..+|+.|++.++.+...++
T Consensus 108 ~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred e-HHHHHHHHHHHhcCCeEEE
Confidence 6 9999999999987765443
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.73 E-value=1.6e-07 Score=86.86 Aligned_cols=96 Identities=22% Similarity=0.364 Sum_probs=74.6
Q ss_pred ceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCC-c-c--ccCCcc
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE-G-L--VGDAHL 455 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~-~--~~~~~~ 455 (779)
..-++++.. ...|.+..+ +.+++|||+|++||.|.+.+|..+++++||.|+|++|+...+. . . ..+...
T Consensus 22 ~~g~lv~~~------~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~ 94 (122)
T cd02130 22 VTGPLVVVP------NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPY 94 (122)
T ss_pred cEEEEEEeC------CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCE
Confidence 345666643 346886554 3579999999999999999999999999999999998873221 1 1 122457
Q ss_pred cCeEEEchhhHHHHHHHHhcCCCCeEE
Q 004010 456 LPACALGSDEGDAVKAYISSTANPTAT 482 (779)
Q Consensus 456 ~p~~~v~~~~g~~l~~~~~~~~~~~~~ 482 (779)
+|++.|+..+|+.|++.++++.+.+++
T Consensus 95 Ip~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 95 VPTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred eeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 999999999999999999988776543
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.68 E-value=8.1e-08 Score=89.23 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=70.6
Q ss_pred ccccCCC--CCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCC-cc-c----cCCcccCeEEEchhhHH
Q 004010 396 SLCMENS--LDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE-GL-V----GDAHLLPACALGSDEGD 467 (779)
Q Consensus 396 ~~C~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~-~----~~~~~~p~~~v~~~~g~ 467 (779)
..|.+.. +...+++|||+||+|+.|.+.+|..+++++||.|+|++++..... .. . .....+|++.|+..+|+
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 4598877 677889999999999999999999999999999999998876321 11 1 13467999999999999
Q ss_pred HHHHHHhcCCCCeE
Q 004010 468 AVKAYISSTANPTA 481 (779)
Q Consensus 468 ~l~~~~~~~~~~~~ 481 (779)
.|++|+.++.+.++
T Consensus 111 ~l~~~~~~~~~v~~ 124 (126)
T cd00538 111 ALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHhcCCceEE
Confidence 99999988665443
No 56
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.67 E-value=8.7e-08 Score=88.90 Aligned_cols=86 Identities=30% Similarity=0.356 Sum_probs=68.8
Q ss_pred cccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCC-----Ccc--c-----cCCcccCeEEEc
Q 004010 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG-----EGL--V-----GDAHLLPACALG 462 (779)
Q Consensus 395 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~--~-----~~~~~~p~~~v~ 462 (779)
...|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+.... ..+ . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986543 567999999999999999999999999999999999876532 111 1 124578999999
Q ss_pred hhhHHHHHHHHhcCCCCeE
Q 004010 463 SDEGDAVKAYISSTANPTA 481 (779)
Q Consensus 463 ~~~g~~l~~~~~~~~~~~~ 481 (779)
..+|+.|+++++.+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987765443
No 57
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.62 E-value=2.9e-07 Score=85.27 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=68.7
Q ss_pred cccccCCCCC--CC----cccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCc-c----------ccCCcccC
Q 004010 395 ASLCMENSLD--PN----LVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG-L----------VGDAHLLP 457 (779)
Q Consensus 395 ~~~C~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~----------~~~~~~~p 457 (779)
.+.|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+...... . ..+...||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4579876542 22 378899999999999999999999999999999998654211 1 11234699
Q ss_pred eEEEchhhHHHHHHHHhcCCCCeEE
Q 004010 458 ACALGSDEGDAVKAYISSTANPTAT 482 (779)
Q Consensus 458 ~~~v~~~~g~~l~~~~~~~~~~~~~ 482 (779)
+++|+..+|+.|++.+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988765543
No 58
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.60 E-value=1.8e-07 Score=88.31 Aligned_cols=84 Identities=15% Similarity=0.300 Sum_probs=68.4
Q ss_pred cccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCccc------cCCcccCeEEEchhhHHH
Q 004010 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV------GDAHLLPACALGSDEGDA 468 (779)
Q Consensus 395 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~v~~~~g~~ 468 (779)
.+.|.+.. .+++|||+|++||.|.|.+|..+++++||.++|++|+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798754 478999999999999999999999999999999998765322111 113579999999999999
Q ss_pred HHHHHhcCCCCeE
Q 004010 469 VKAYISSTANPTA 481 (779)
Q Consensus 469 l~~~~~~~~~~~~ 481 (779)
|++++..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998776543
No 59
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.59 E-value=2.2e-07 Score=86.81 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=60.7
Q ss_pred CCCCcccccEEEEcCCCCc-----hhhHHHHHHHcCceEEEEeccCCC-C-C-ccccC---CcccCeEEEchhhHHHHHH
Q 004010 403 LDPNLVRGKIVICDRGSSP-----RVAKGLVVKKAGGVGMILANGISN-G-E-GLVGD---AHLLPACALGSDEGDAVKA 471 (779)
Q Consensus 403 ~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~-~-~-~~~~~---~~~~p~~~v~~~~g~~l~~ 471 (779)
+...+++|||+|++||.|. |.+|.++++++||.|+|+||+... + . ....+ ...||++.|+..+|+.|++
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 4456899999999999999 999999999999999999999732 1 1 12222 3589999999999999999
Q ss_pred HHhcC
Q 004010 472 YISST 476 (779)
Q Consensus 472 ~~~~~ 476 (779)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88543
No 60
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.50 E-value=4.7e-07 Score=82.58 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=65.0
Q ss_pred ccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCC--ccc----cCCcccCeEEEchhhHH
Q 004010 394 SASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE--GLV----GDAHLLPACALGSDEGD 467 (779)
Q Consensus 394 ~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~--~~~----~~~~~~p~~~v~~~~g~ 467 (779)
..+.|.+. +..+++|||+|++||.|.|.+|..+++++||.++|++|+..... ... .....+|+++|+..+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 35679765 56889999999999999999999999999999999998776421 111 23347999999999999
Q ss_pred HHHHHHhc
Q 004010 468 AVKAYISS 475 (779)
Q Consensus 468 ~l~~~~~~ 475 (779)
.|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99888653
No 61
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.46 E-value=7e-07 Score=85.70 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=69.1
Q ss_pred cccccCCCCCC---CcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCC-cccc-----CCcccCeEEEchhh
Q 004010 395 ASLCMENSLDP---NLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE-GLVG-----DAHLLPACALGSDE 465 (779)
Q Consensus 395 ~~~C~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~~~-----~~~~~p~~~v~~~~ 465 (779)
.+.|.+....+ ..+.|+|+|++||.|.|.+|..+++++||.++|++|+..... .+.. ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798766544 789999999999999999999999999999999999875422 1111 13589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004010 466 GDAVKAYISSTAN 478 (779)
Q Consensus 466 g~~l~~~~~~~~~ 478 (779)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 62
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.6e-06 Score=96.59 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=98.5
Q ss_pred ccCCccCCCCCCCcEEEEEecCCCCCCCCcccCCCCCCCCcceeeeecccccCCccCCceeeeeeeccccccccCCCCCC
Q 004010 122 QQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGP 201 (779)
Q Consensus 122 ~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~ 201 (779)
+...|..+++|+++.|+|.|+|+...||+.... ....+..++... ..
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~------~~-- 68 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRH------DN-- 68 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecC------CC--
Confidence 457899999999999999999999999998642 111222222221 00
Q ss_pred CCCCCCCccccCCCCCCCCccchhhhhhcccccCCCccccccccceeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhh
Q 004010 202 IGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV 281 (779)
Q Consensus 202 ~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~ 281 (779)
.+.+-.+......|||-||+-.+...++..- ..|+++++++..+|++... .++...+.....
T Consensus 69 ------~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~~----v~~~~~~~~~~~ 130 (431)
T KOG3525|consen 69 ------DPEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAGC----VSDAVEAPSLGF 130 (431)
T ss_pred ------CcccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeeee----cccceecccccC
Confidence 0222223334688999999999987633222 2599999999999998643 113222222222
Q ss_pred h-CCCcEEEeccCCCCCCCCCCC---CCHHHHHHHH-----HhcCCcEEEEccCCCCCCCC
Q 004010 282 N-DGVDVISISIGGGDGISSPYY---LDPIAIGSYG-----AASRGVFVSSSAGNDGPNGM 333 (779)
Q Consensus 282 ~-~gvdVIn~SlG~~~g~~~~~~---~d~~~~a~~~-----a~~~Gi~vV~AAGN~G~~~~ 333 (779)
. .-+|+-+.|||... ..... ......+.+. ...+|-+.++|.||.|....
T Consensus 131 ~~~~~di~scsw~pdd--d~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 131 GPCHIDIYSCSWGPDD--DGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred CCCCceeecCcCCccc--CCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 2 35789999999762 11111 1122223222 23568889999999886543
No 63
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.27 E-value=7.7e-06 Score=76.11 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=70.2
Q ss_pred CceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCC--chhhHHHHHHHcCceEEEEeccCCCCCcc-----c-
Q 004010 379 EKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS--PRVAKGLVVKKAGGVGMILANGISNGEGL-----V- 450 (779)
Q Consensus 379 ~~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~- 450 (779)
....++||.+. +.+..+...+++|||++++++.+ .+..|..+++++||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~g~--------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGY--------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCC--------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 45788888664 22223345679999999999998 88999999999999999999876542211 1
Q ss_pred -cCCcccCeEEEchhhHHHHHHHHhcCC
Q 004010 451 -GDAHLLPACALGSDEGDAVKAYISSTA 477 (779)
Q Consensus 451 -~~~~~~p~~~v~~~~g~~l~~~~~~~~ 477 (779)
.....+|++.|+.+||+.|.+.++.+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999998754
No 64
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.5e-05 Score=95.62 Aligned_cols=97 Identities=24% Similarity=0.314 Sum_probs=58.6
Q ss_pred eeeeCCCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCC-cEEEeccCCCCC--CCCCCCCCHHHHHHHHHhcCCcEEEE
Q 004010 247 AKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGV-DVISISIGGGDG--ISSPYYLDPIAIGSYGAASRGVFVSS 323 (779)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gv-dVIn~SlG~~~g--~~~~~~~d~~~~a~~~a~~~Gi~vV~ 323 (779)
..-+||.|+|..|-+ +. .....+..|+..-...=+ -+|-.||+.... ...+.+.+....-.+.|..+||.+++
T Consensus 288 s~A~AP~A~I~lvva--p~--~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN--PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEc--CC--CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 467999999998876 22 222222233332222111 233456654310 01111334555666678899999999
Q ss_pred ccCCCCCCCCc--------cccCCCceEEecc
Q 004010 324 SAGNDGPNGMS--------VTNLAPWIVTVGA 347 (779)
Q Consensus 324 AAGN~G~~~~~--------~~~~~p~vitVgA 347 (779)
|+|.+|....+ .+..+|+|++||-
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999866543 3468999999997
No 65
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.02 E-value=3.9e-05 Score=69.76 Aligned_cols=85 Identities=25% Similarity=0.305 Sum_probs=57.3
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEcC-------CCCe-----------EEEEecCeeEeccCceEEEEEEEEEecccccc
Q 004010 686 SSKSFIRTVTNVGQPNAVYTVKVVSP-------EKGV-----------TVTVKPSRLVFTEGVKKSSFVVTVTADSKNLV 747 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~~ty~~~~~~p-------~~g~-----------~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~ 747 (779)
...+++.+|+|.|+...+|+++.... ..|. .+...|..+++ ++|++++++|+|+.+.+...
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 45889999999999999999887611 0221 56677888999 79999999999998542111
Q ss_pred cCCCcceEEEEEEEC-Cce-EEEeEEE
Q 004010 748 LNDSGAAFGSISWSD-GKH-EVRSPLV 772 (779)
Q Consensus 748 ~~~~~~~~G~~~~~~-~~~-~v~~P~~ 772 (779)
....+ ++|+|.+++ ..+ .+++|++
T Consensus 87 ~~~~~-~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPF-YEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EE-EEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCE-EEEEEEEEcCCCCEEEEeeeC
Confidence 23556 899999997 454 8999985
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.62 E-value=0.00022 Score=66.97 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCCcccccEEEEcCCCC------chhhH-------HHHHHHcCceEEEEeccCCC-------CCccc-cCCcccCeEEEc
Q 004010 404 DPNLVRGKIVICDRGSS------PRVAK-------GLVVKKAGGVGMILANGISN-------GEGLV-GDAHLLPACALG 462 (779)
Q Consensus 404 ~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~-------~~~~~-~~~~~~p~~~v~ 462 (779)
...+++|||++++++.| .+..| ...++++||.|+|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45789999999999999 88877 69999999999999985421 11111 223569999999
Q ss_pred hhhHHHHHHHHhcCCCCeE
Q 004010 463 SDEGDAVKAYISSTANPTA 481 (779)
Q Consensus 463 ~~~g~~l~~~~~~~~~~~~ 481 (779)
.+|+..|...++.+..+++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765544
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.37 E-value=0.00047 Score=67.46 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=56.3
Q ss_pred CCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCC------------------CCccc------------c---
Q 004010 405 PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN------------------GEGLV------------G--- 451 (779)
Q Consensus 405 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------------------~~~~~------------~--- 451 (779)
..+++|||+|+++|.|.+.+|..+|+++||+|+|+|++... ++.+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 45799999999999999999999999999999999987421 00000 0
Q ss_pred -CCcccCeEEEchhhHHHHHHHHhc
Q 004010 452 -DAHLLPACALGSDEGDAVKAYISS 475 (779)
Q Consensus 452 -~~~~~p~~~v~~~~g~~l~~~~~~ 475 (779)
....||++-|+..+++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 124589999999999999998753
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.01 E-value=0.0016 Score=61.29 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=51.4
Q ss_pred ceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCC------------------chhhHHHHHHHcCceEEEEec
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS------------------PRVAKGLVVKKAGGVGMILAN 441 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~n 441 (779)
...|+||.+-.. ....|....+...+++|||||+.++.| .+..|..+++++||.|+|+++
T Consensus 20 ~~aelVfvGyGi--~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~ 97 (142)
T cd04814 20 KDAPLVFVGYGI--KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVH 97 (142)
T ss_pred cceeeEEecCCc--CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEe
Confidence 467888876431 235688888888899999999999877 466799999999999999999
Q ss_pred cCC
Q 004010 442 GIS 444 (779)
Q Consensus 442 ~~~ 444 (779)
+..
T Consensus 98 ~~~ 100 (142)
T cd04814 98 ELA 100 (142)
T ss_pred CCC
Confidence 865
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.80 E-value=0.0029 Score=59.10 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=51.0
Q ss_pred ceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCc------------hhhHHHHHHHcCceEEEEeccCCC
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSP------------RVAKGLVVKKAGGVGMILANGISN 445 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (779)
..-++||.+-.. ....|....+...+++|||||+.++.|. +..|..++.++||.|+|++++...
T Consensus 22 v~gelVfvGyG~--~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGL--VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCc--CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 456788876432 2356887777788999999999998763 668999999999999999998653
No 70
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.78 E-value=0.013 Score=55.89 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=50.1
Q ss_pred ceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCC------------------CchhhHHHHHHHcCceEEEEec
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGS------------------SPRVAKGLVVKKAGGVGMILAN 441 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~n 441 (779)
.+-++||.+-. .....|....+...+++|||||+.++. |.+..|..+++++||.|+|+++
T Consensus 20 vtg~lVfvGyG--i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 20 VTAPVVFAGYG--ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred ceEeEEEecCC--cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 45688887642 224557777777889999999998763 5677899999999999999998
Q ss_pred cCCC
Q 004010 442 GISN 445 (779)
Q Consensus 442 ~~~~ 445 (779)
+...
T Consensus 98 d~~~ 101 (151)
T cd04822 98 GPNS 101 (151)
T ss_pred CCcc
Confidence 8754
No 71
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.54 E-value=0.0076 Score=65.86 Aligned_cols=79 Identities=16% Similarity=0.296 Sum_probs=64.4
Q ss_pred CCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCC------CCccccCCcccCeEEEchhhHHHHHHHHhcCCC
Q 004010 405 PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN------GEGLVGDAHLLPACALGSDEGDAVKAYISSTAN 478 (779)
Q Consensus 405 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~ 478 (779)
..+++||++++.||.|.|.+|...++++||.++++.|+..+ ++........||++++..++++++..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 46789999999999999999999999999999999998442 223344557899999999999999886666655
Q ss_pred CeEEE
Q 004010 479 PTATI 483 (779)
Q Consensus 479 ~~~~i 483 (779)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 54443
No 72
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.13 E-value=0.099 Score=46.35 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=67.4
Q ss_pred CCCCCccchhhhcccCCCCceeEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecccc
Q 004010 666 PENLNYPSIAALFSTQSRGVSSKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKN 745 (779)
Q Consensus 666 ~~~lN~ps~~~~~~~~~~~~~~~t~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~ 745 (779)
|..|++-.+.+. ...+.+.+|+|.|.....|++..... ..-.++++|..=.+ ++|++.+++|+|....
T Consensus 8 P~~ldFG~v~~g--------~~~~~~v~l~N~s~~p~~f~v~~~~~-~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-- 75 (102)
T PF14874_consen 8 PKELDFGNVFVG--------QTYSRTVTLTNTSSIPARFRVRQPES-LSSFFSVEPPSGFL-APGESVELEVTFSPTK-- 75 (102)
T ss_pred CCEEEeeEEccC--------CEEEEEEEEEECCCCCEEEEEEeCCc-CCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--
Confidence 445666655432 45667888999999999999876542 34567778876666 7999999999999543
Q ss_pred cccCCCcceEEEEEEECCceEEEeEEEEEe
Q 004010 746 LVLNDSGAAFGSISWSDGKHEVRSPLVVTQ 775 (779)
Q Consensus 746 ~~~~~~~~~~G~~~~~~~~~~v~~P~~v~~ 775 (779)
..+. ..+.|...-.+..+.+|+-+..
T Consensus 76 --~~g~--~~~~l~i~~e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 76 --PLGD--YEGSLVITTEGGSFEIPVKAEV 101 (102)
T ss_pred --CCce--EEEEEEEEECCeEEEEEEEEEE
Confidence 2233 4688887766678888887653
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.85 E-value=0.018 Score=58.43 Aligned_cols=58 Identities=28% Similarity=0.301 Sum_probs=46.5
Q ss_pred ceEeEEecCCCCCcccccccCCCCC-----CCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLD-----PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~-----~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (779)
..-++||.+- |....++ ..+++|||+|+++|.+.+..|..+|+++||+|+|++++...
T Consensus 45 v~g~lVyvny--------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 45 VTAELVYANY--------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred ceEEEEEcCC--------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4678888653 4443332 56799999999999998889999999999999999987643
No 74
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.57 E-value=0.016 Score=54.56 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=37.0
Q ss_pred CcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004010 406 NLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (779)
Q Consensus 406 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (779)
-+++|||+|++.|...+-.|..+|++.||+|+|+|.+..+
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 6799999999999999999999999999999999988643
No 75
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.07 E-value=0.028 Score=52.22 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=74.4
Q ss_pred eEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCcc----------c
Q 004010 381 MYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGL----------V 450 (779)
Q Consensus 381 ~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----------~ 450 (779)
..++|.+ +...+|.... +.-...|.|++++||.|+|..|..+++++||..+|+.++.....++ .
T Consensus 65 ~~~lV~a-----dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 65 NLELVLA-----DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred Ccceeec-----CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 4555553 3356776532 3345778999999999999999999999999999998776643332 2
Q ss_pred cCCcccCeEEEchhhHHHHHHHHhcCCCCeEEEEecc
Q 004010 451 GDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKG 487 (779)
Q Consensus 451 ~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~ 487 (779)
.+...+|++++-..+|..++.-++.-..+-+.|..+-
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 3456899999999999877777776666666665543
No 76
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.01 E-value=0.12 Score=43.36 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=37.6
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecc
Q 004010 686 SSKSFIRTVTNVGQPN-AVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADS 743 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~-~ty~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 743 (779)
.+.+++.+|+|.|... ...++++..| .|-++...|..+.--++|+++++++++++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P-~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLP-EGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCC-CCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 5678999999999754 4588888899 9999888888876558999999999999875
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.13 Score=55.32 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=63.0
Q ss_pred cccccCCCC---CCCcccccEEEEcCCCCchhhHHHHHHHcCceEEEEeccCCCCCcc----ccCCcccCeEEEchhhHH
Q 004010 395 ASLCMENSL---DPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGL----VGDAHLLPACALGSDEGD 467 (779)
Q Consensus 395 ~~~C~~~~~---~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~~~p~~~v~~~~g~ 467 (779)
.++|++-.- ........++++.||.|+|.+|..+++++|..++|+||+....... ......+++++++...|+
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 356876432 2345667899999999999999999999999999999987654322 234567889999999999
Q ss_pred HHHHHHhc
Q 004010 468 AVKAYISS 475 (779)
Q Consensus 468 ~l~~~~~~ 475 (779)
.|.+|...
T Consensus 142 ~l~~~~~~ 149 (348)
T KOG4628|consen 142 LLSSYAGR 149 (348)
T ss_pred HHHHhhcc
Confidence 99887543
No 78
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.89 E-value=0.6 Score=44.93 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=41.6
Q ss_pred ceEeEEecCCCCCcccccccCCCCCCCcccccEEEEcCCCCc-------------------hhhHHHHHHHcCceEEEEe
Q 004010 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSP-------------------RVAKGLVVKKAGGVGMILA 440 (779)
Q Consensus 380 ~~~~~v~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~-------------------~~~~~~~~~~~Ga~g~i~~ 440 (779)
...|+||.+-.-.. ..-....+...|++|||||+.++... ...|...+.+.||.|+|++
T Consensus 22 ~~~elVFvGyGi~a--pe~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVA--PEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccC--cccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 45677776542111 11112245567899999999866432 2249999999999999998
Q ss_pred ccCC
Q 004010 441 NGIS 444 (779)
Q Consensus 441 n~~~ 444 (779)
.+..
T Consensus 100 ~~~~ 103 (157)
T cd04821 100 HETE 103 (157)
T ss_pred eCCC
Confidence 7653
No 79
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=90.21 E-value=3.1 Score=37.93 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=40.1
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEeccc
Q 004010 687 SKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSK 744 (779)
Q Consensus 687 ~~t~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 744 (779)
.-..+.+++|......+|++++..+ +|+++......+++ ++|++.++.|.++++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~-~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGL-PGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES--SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecC-CCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 3457888999999999999999998 89999665578888 79999999999998863
No 80
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=78.46 E-value=1.4 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.9
Q ss_pred CCCCCCcEEEEEecCCCCCCCCcc
Q 004010 129 SDYGSDVIIGVFDTGIWPERRSFS 152 (779)
Q Consensus 129 ~~~G~gv~VgVIDtGid~~Hp~f~ 152 (779)
.+.|+||+|||+||||||.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999998775
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=74.23 E-value=8.1 Score=43.04 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=53.4
Q ss_pred eeEEEEEEEEecCCCCeE-EEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecccccccCCCc
Q 004010 686 SSKSFIRTVTNVGQPNAV-YTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSG 752 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~~t-y~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~~ 752 (779)
...++...+.|.|+.+.| -.+++..| .|-.+.|.|.++---++||.+++.+|++++.+ ...++|
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~P-qgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~--a~aGdY 461 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGP-QGWEIEVDESTIPSLEPGESKTVSLTITVPED--AGAGDY 461 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCC-ccceEEECcccccccCCCCcceEEEEEEcCCC--CCCCcE
Confidence 467888899999987754 67889999 99999999998876689999999999999864 455555
No 82
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=73.59 E-value=46 Score=30.56 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=47.5
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEcC---CCC-eEE-------------E----E-ecCeeEeccCceEEEEEEEEEecc
Q 004010 686 SSKSFIRTVTNVGQPNAVYTVKVVSP---EKG-VTV-------------T----V-KPSRLVFTEGVKKSSFVVTVTADS 743 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~~ty~~~~~~p---~~g-~~v-------------~----v-~p~~l~~~~~g~~~~~~vt~~~~~ 743 (779)
.+.+++.+|+|.++...+|.+.+... ..| +.. . | .|..+++ +++|+++++++++.+.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl-~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTL-PPNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEE-CCCCEEEEEEEEEcCC
Confidence 67889999999999999999886421 012 111 0 1 2444777 7999999999999876
Q ss_pred cccccCCCcceEEEEEEE
Q 004010 744 KNLVLNDSGAAFGSISWS 761 (779)
Q Consensus 744 ~~~~~~~~~~~~G~~~~~ 761 (779)
..-... .-|.|.+.
T Consensus 106 ---~~f~G~-ilGGi~~~ 119 (121)
T PF06030_consen 106 ---KAFDGI-ILGGIYFS 119 (121)
T ss_pred ---CCcCCE-EEeeEEEE
Confidence 222233 56777664
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=69.33 E-value=40 Score=30.66 Aligned_cols=53 Identities=23% Similarity=0.138 Sum_probs=39.8
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEc---C---CCCeEEEEecCeeEeccCceEEEEEEEEEe
Q 004010 687 SKSFIRTVTNVGQPNAVYTVKVVS---P---EKGVTVTVKPSRLVFTEGVKKSSFVVTVTA 741 (779)
Q Consensus 687 ~~t~~rtvtNvg~~~~ty~~~~~~---p---~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~ 741 (779)
..+.+.+|+|.++....+.+.+.. . .+.-.+-|+|..+.+ ++|+++.+.| +..
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 346678999999877777777764 1 011257789999999 7999999999 663
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=69.22 E-value=18 Score=31.92 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=39.0
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEec
Q 004010 687 SKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTAD 742 (779)
Q Consensus 687 ~~t~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 742 (779)
..+...+|+|.++....|.+....| ..+ .|.|..-.+ ++|++.+++|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~-~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNP-NRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-T-TTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCC-ceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 4566779999999989999998888 554 567998777 799999999998864
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=67.31 E-value=21 Score=40.41 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=47.0
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecc
Q 004010 687 SKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADS 743 (779)
Q Consensus 687 ~~t~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 743 (779)
.-..+.++.|.+..+.+|+++++.. +|.++...++.+++ ++||+.++.|++..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~-~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGL-PGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecC-CCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 3457788999999999999999988 89888876557888 7999999999999875
No 86
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=54.90 E-value=47 Score=24.54 Aligned_cols=44 Identities=27% Similarity=0.191 Sum_probs=25.0
Q ss_pred EEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEE
Q 004010 692 RTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTV 739 (779)
Q Consensus 692 rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~ 739 (779)
++++|.|+....-.- +... =|-. +++.+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~-v~ts-CgCt-~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITD-VQTS-CGCT-TAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEE-eeEc-cCCE-EeeCCcceE-CCCCEEEEEEEC
Confidence 578899987654321 2222 2322 223333334 799999988874
No 87
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=51.51 E-value=90 Score=26.64 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=32.3
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEec
Q 004010 686 SSKSFIRTVTNVGQPN-AVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTAD 742 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~-~ty~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 742 (779)
...+++.+|+|.|... ..+.+.+... |..+. ....-.+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~--~~~~~-~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD--GNSVS-TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET--TEEEE-EEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC--Cceec-cEEECCc-CCCcEEEEEEEEEeC
Confidence 5788899999999864 5567766544 43331 1111244 689998888887765
No 88
>COG1470 Predicted membrane protein [Function unknown]
Probab=47.02 E-value=1.9e+02 Score=32.65 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=44.9
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEE-cCCCCeEEEEec-----CeeEeccCceEEEEEEEEEeccc
Q 004010 686 SSKSFIRTVTNVGQPNAVYTVKVV-SPEKGVTVTVKP-----SRLVFTEGVKKSSFVVTVTADSK 744 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~~ty~~~~~-~p~~g~~v~v~p-----~~l~~~~~g~~~~~~vt~~~~~~ 744 (779)
.+..++.++.|.|....+|.+++. .| +|.+....- +++.+ ++||++.++|.+..+.+
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~p-e~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n 346 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLP-EGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN 346 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCC-CCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC
Confidence 456788889999999999999998 67 776655432 24566 69999999999997753
No 89
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=43.51 E-value=2.1e+02 Score=26.92 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=47.0
Q ss_pred eEEEEEEEEecCCCC-eEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecccccccCCCcceEEEEEEEC
Q 004010 687 SKSFIRTVTNVGQPN-AVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGAAFGSISWSD 762 (779)
Q Consensus 687 ~~t~~rtvtNvg~~~-~ty~~~~~~p~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~G~~~~~~ 762 (779)
...+..-+-|..+.. .--++....- .++++--.|..+++ .+++.++++.++++.+ ..... .||.|++..
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~-gdLklve~p~~~tL-~P~~~~~i~~~iKVsS----tetGv-IfG~I~Yd~ 139 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATL-GDLKLVERPQPITL-APHGFARIKATIKVSS----TETGV-IFGNIVYDG 139 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEec-CCcEEccCCCceee-CCCcEEEEEEEEEEEe----ccCCE-EEEEEEEec
Confidence 344555556654322 2233444344 67888888999998 7999999999999876 22344 899999864
No 90
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=41.41 E-value=1.3e+02 Score=26.57 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=35.8
Q ss_pred eeEEEEEEEEecCCCC-eE-----EEEEEEcCCCCeE---EEEecCeeEeccCceEEEEEEEEEecc
Q 004010 686 SSKSFIRTVTNVGQPN-AV-----YTVKVVSPEKGVT---VTVKPSRLVFTEGVKKSSFVVTVTADS 743 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~-~t-----y~~~~~~p~~g~~---v~v~p~~l~~~~~g~~~~~~vt~~~~~ 743 (779)
...++..+++|..+.. .+ -..++..+ |+. .......+++ ++|++.++++++....
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt--G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT--GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECT--TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEEC--CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 4678889999999876 44 23333444 764 4566666777 7999999999888653
No 91
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=40.57 E-value=79 Score=26.44 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=28.6
Q ss_pred EEEEecCeeEeccCceEEEEEEEEEecccccccCCCcceEEEEEEECCc
Q 004010 716 TVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGAAFGSISWSDGK 764 (779)
Q Consensus 716 ~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~G~~~~~~~~ 764 (779)
.+++.|..+++ ..|+++.|+++++... .. ....+.|...+
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~----~~----~~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS----AK----VTGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC----CC----ccceEEEEECC
Confidence 57889999999 6999999999976433 11 13567787643
No 92
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.49 E-value=35 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=19.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 004010 564 AALLKSAHPDWSPAAIRSAMMTTA 587 (779)
Q Consensus 564 aALl~~~~P~~sp~~Ik~~L~~TA 587 (779)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346789999999999999997654
No 93
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=31.99 E-value=55 Score=34.86 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=48.9
Q ss_pred eeeeCCCCeEEEEEeecCCCC------CCHH----------HHHHHHHHhhhCCCcEEEeccCCCCC---------CCCC
Q 004010 247 AKGVAPKARLAVYKVCWKNAG------CFDS----------DILAAFDAAVNDGVDVISISIGGGDG---------ISSP 301 (779)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~~g------~~~s----------~i~~ai~~A~~~gvdVIn~SlG~~~g---------~~~~ 301 (779)
++-+||.++|-+...+|.... +... .=+.-+++|+++|.+||+ |.|...- .-..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 577899998887766664310 1111 113557789999999996 5564320 0112
Q ss_pred CCCCHHHHHHHHHh-----cCCcEEEEcc
Q 004010 302 YYLDPIAIGSYGAA-----SRGVFVSSSA 325 (779)
Q Consensus 302 ~~~d~~~~a~~~a~-----~~Gi~vV~AA 325 (779)
...||++....+-. ..||.||+|+
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~ 244 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSL 244 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEec
Confidence 44688887776532 3588999984
No 94
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=31.53 E-value=22 Score=16.36 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=4.3
Q ss_pred cccCCC
Q 004010 500 SFSARG 505 (779)
Q Consensus 500 ~fSs~G 505 (779)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 95
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=25.87 E-value=3.8e+02 Score=24.02 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=34.7
Q ss_pred eeeC-CCCeEEEEEeecCCCCCCHHHHHHHHHHhhhCCCcEEEeccCCC
Q 004010 248 KGVA-PKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIGGG 295 (779)
Q Consensus 248 ~GvA-P~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG~~ 295 (779)
.... ++++|+.+- .+. ||....++.-+++..+.|+|+|-+|-...
T Consensus 31 ~~y~~~~~elvgf~--~Cg-GCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 31 ARYDDEDVELVGFF--TCG-GCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred ccCCCCCeEEEEEe--eCC-CCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 3444 467777654 444 78899999999999999999999986654
No 96
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=25.87 E-value=1.5e+02 Score=36.42 Aligned_cols=53 Identities=13% Similarity=0.280 Sum_probs=33.0
Q ss_pred eeEEEEEEEEecCCCCeEEEEE--EEcCCCCeEEEEecC-------eeEeccCceEEEEEEEEEec
Q 004010 686 SSKSFIRTVTNVGQPNAVYTVK--VVSPEKGVTVTVKPS-------RLVFTEGVKKSSFVVTVTAD 742 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~~ty~~~--~~~p~~g~~v~v~p~-------~l~~~~~g~~~~~~vt~~~~ 742 (779)
...+++.+|||+|+....-.+. +..| .+ .+. .|. .+.+ ++||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~-~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDV-TA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCC-CC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 4678999999999855433333 3344 22 111 231 2345 799999988888754
No 97
>PRK15019 CsdA-binding activator; Provisional
Probab=24.96 E-value=67 Score=30.56 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=25.5
Q ss_pred CccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004010 552 GTSMACPHVSGAAALLKSAHPDWSPAAIRS 581 (779)
Q Consensus 552 GTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 581 (779)
|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 81 ~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 81 GDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred eeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444 58999999999999999999999975
No 98
>PLN03080 Probable beta-xylosidase; Provisional
Probab=24.20 E-value=1.9e+02 Score=35.53 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=32.3
Q ss_pred eEEEEEEEEecCCCCeEEEEEE--EcCCCCeEEEEe------cCeeEeccCceEEEEEEEEEe
Q 004010 687 SKSFIRTVTNVGQPNAVYTVKV--VSPEKGVTVTVK------PSRLVFTEGVKKSSFVVTVTA 741 (779)
Q Consensus 687 ~~t~~rtvtNvg~~~~ty~~~~--~~p~~g~~v~v~------p~~l~~~~~g~~~~~~vt~~~ 741 (779)
..+++.+|||+|+......+.+ ..| .+ .+... -..+.+ ++||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p-~~-~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSP-PV-VPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecC-cc-CCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4789999999998665544443 334 21 11111 123445 79999998888875
No 99
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=24.13 E-value=4.4e+02 Score=22.25 Aligned_cols=53 Identities=23% Similarity=0.191 Sum_probs=24.3
Q ss_pred EEEEEEEecCCCCeE--------EEEEEEcCCCCeEE---------EEecCeeEeccCceEEEEEEEEEecc
Q 004010 689 SFIRTVTNVGQPNAV--------YTVKVVSPEKGVTV---------TVKPSRLVFTEGVKKSSFVVTVTADS 743 (779)
Q Consensus 689 t~~rtvtNvg~~~~t--------y~~~~~~p~~g~~v---------~v~p~~l~~~~~g~~~~~~vt~~~~~ 743 (779)
.++.+|+|.++...+ |.+.+..+ .|-.| +---...++ ++||+++|+.++....
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~-~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDK-EGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-T-T--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECC-CCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 466777888765432 34444433 33222 222224556 6899998888876543
No 100
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.86 E-value=65 Score=25.05 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=21.9
Q ss_pred eEeecCccchhhhHHHHH------HHHHhhCCCCCHHHHHHHHH
Q 004010 547 FNILSGTSMACPHVSGAA------ALLKSAHPDWSPAAIRSAMM 584 (779)
Q Consensus 547 y~~~sGTSmAaP~VAG~a------ALl~~~~P~~sp~~Ik~~L~ 584 (779)
--.+.||=+..=.|.... .-+.+.||.+++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 345566666655554442 23456799999999999884
No 101
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=23.75 E-value=74 Score=29.93 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=26.5
Q ss_pred ecCccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004010 550 LSGTSMACPHVSGAAALLKSAHPDWSPAAIRS 581 (779)
Q Consensus 550 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 581 (779)
+.|.| =|+.|-|++|||.+.+-+.+|++|.+
T Consensus 74 f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 74 FYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 44555 48999999999999999999999874
No 102
>PRK13203 ureB urease subunit beta; Reviewed
Probab=22.39 E-value=2.3e+02 Score=25.05 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=27.7
Q ss_pred eeEEEEEEEEecCCCCe----EEEEEEEcC--------CCCeEEEEe-cCeeEeccCceEEEEEEE
Q 004010 686 SSKSFIRTVTNVGQPNA----VYTVKVVSP--------EKGVTVTVK-PSRLVFTEGVKKSSFVVT 738 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~~----ty~~~~~~p--------~~g~~v~v~-p~~l~~~~~g~~~~~~vt 738 (779)
+..+++.+|+|.|+.+- -|..--..+ .-|..+.+- =..+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 34567889999998652 233211000 022222221 123557 68988887764
No 103
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=22.25 E-value=2.4e+02 Score=24.98 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=28.0
Q ss_pred eeEEEEEEEEecCCCCe----EEEEEEEcC--------CCCeEEEEe-cCeeEeccCceEEEEEEE
Q 004010 686 SSKSFIRTVTNVGQPNA----VYTVKVVSP--------EKGVTVTVK-PSRLVFTEGVKKSSFVVT 738 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~~----ty~~~~~~p--------~~g~~v~v~-p~~l~~~~~g~~~~~~vt 738 (779)
+..+++.+|+|.|+.+- -|..--..+ .-|..+.+- =..+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEEE
Confidence 34567889999998652 333211000 023333321 123557 68988887764
No 104
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=22.21 E-value=1.1e+03 Score=26.08 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=28.0
Q ss_pred eeEEEEEEEEecCCCCeEE----EEEEE--cC----------C-----CCeEEEEecCeeEeccCceEEEEEEEEEe
Q 004010 686 SSKSFIRTVTNVGQPNAVY----TVKVV--SP----------E-----KGVTVTVKPSRLVFTEGVKKSSFVVTVTA 741 (779)
Q Consensus 686 ~~~t~~rtvtNvg~~~~ty----~~~~~--~p----------~-----~g~~v~v~p~~l~~~~~g~~~~~~vt~~~ 741 (779)
.+.+++.+|||.|+.+..- ++.+. .| . .| ++|+|+.- + .+||+++++|+++-
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~p-I-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNSP-I-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCCC-c-CCCceEEEEEEeeh
Confidence 5788999999999875431 11121 11 0 23 34555532 1 69999999998863
No 105
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.07 E-value=71 Score=21.99 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.6
Q ss_pred chhhhHHHHHHHH
Q 004010 555 MACPHVSGAAALL 567 (779)
Q Consensus 555 mAaP~VAG~aALl 567 (779)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998743
No 106
>PRK13202 ureB urease subunit beta; Reviewed
Probab=21.82 E-value=2.5e+02 Score=24.88 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=27.3
Q ss_pred EEEEEEEEecCCCCe----EEEEEEEcC--------CCCeEEEEe-cCeeEeccCceEEEEEEE
Q 004010 688 KSFIRTVTNVGQPNA----VYTVKVVSP--------EKGVTVTVK-PSRLVFTEGVKKSSFVVT 738 (779)
Q Consensus 688 ~t~~rtvtNvg~~~~----ty~~~~~~p--------~~g~~v~v~-p~~l~~~~~g~~~~~~vt 738 (779)
.+++.+|+|.|+.+- -|..--..+ .-|..+.+. =..+.| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 567889999999652 343211100 023333221 123557 68988887764
No 107
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=21.10 E-value=90 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=25.7
Q ss_pred cCccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004010 551 SGTSMACPHVSGAAALLKSAHPDWSPAAIRS 581 (779)
Q Consensus 551 sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 581 (779)
.|.| =|+.|-|.+||+.+.+-..||++|..
T Consensus 70 ~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 70 QGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444 58999999999999999999999864
No 108
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.40 E-value=1.4e+02 Score=21.55 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcc
Q 004010 563 AAALLKSAHPDWSPAAIRSAMMTTA 587 (779)
Q Consensus 563 ~aALl~~~~P~~sp~~Ik~~L~~TA 587 (779)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998643
Done!