BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004011
(779 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02Z22|CLPX_LACLS ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactococcus
lactis subsp. cremoris (strain SK11) GN=clpX PE=3 SV=1
Length = 411
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 405 SKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDIT 464
++IL+E EL ++ D + + ++ F D L E ++G E
Sbjct: 41 TRILEE-----ELKEEQDSEMLEVKTPKEMF-DHLNEYVIGQEK---------------A 79
Query: 465 KNVLIASTYVHLKCNNF--AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522
K L + Y H K NF +K A D+ ILL GP GS + LA+ LAK +
Sbjct: 80 KRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSG--KTFLAQTLAKSLNVPF 137
Query: 523 LIVDS 527
I D+
Sbjct: 138 AIADA 142
>sp|Q8GJP6|CLPX_LACLM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactococcus
lactis subsp. cremoris (strain MG1363) GN=clpX PE=3 SV=1
Length = 411
Score = 36.6 bits (83), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 405 SKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDIT 464
++IL+E EL ++ D + + ++ F D L E ++G E
Sbjct: 41 TRILEE-----ELKEEQDSEMLEVKTPKEMF-DHLNEYVIGQEK---------------A 79
Query: 465 KNVLIASTYVHLKCNNF--AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522
K L + Y H K NF +K A D+ ILL GP GS + LA+ LAK +
Sbjct: 80 KRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGS--GKTFLAQTLAKSLNVPF 137
Query: 523 LIVDS 527
I D+
Sbjct: 138 AIADA 142
>sp|P19196|INVA_YEREN Invasin OS=Yersinia enterocolitica PE=3 SV=1
Length = 835
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 86/229 (37%), Gaps = 22/229 (9%)
Query: 185 GPSGALLEITGGKGEVEVNGNVHPKD----------SQVVLRGGDE--LVFSPSGKHSYI 232
G S L+I G + V+V V P D S +V G + L F P K++
Sbjct: 521 GVSVVTLDIQGQQATVDVRFAVLPPDVTNSSFNVSPSDIVADGSMQSILTFVPRNKNNEF 580
Query: 233 FQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPS---AVAGASILASLSNIQK 289
++D G+ +S + + + GD V G S L +QK
Sbjct: 581 VSGITDLEFIQSGVPVTISPVTENADNYTASVVGNSVGDVDITPQVGGES----LDLLQK 636
Query: 290 DLSLIPPPTKAGVDAQNSEIASLASGCDGPEDRIP-DVDMKDATSNNDDAGSSSRGKTVV 348
++L P P G++ + A+ ++ + M D +NN +S
Sbjct: 637 RITLYPVPKITGINVNGEQFATDKGFPKTTFNKATFQLVMNDDVANNTQYDWTSSYAASA 696
Query: 349 PQSDAANENPNLDSIGLDACVDAEIGKIPG--ATYELRPLLRMLAGSSS 395
P + N + G V A+ K P ATY+ +P L + +G+ S
Sbjct: 697 PVDNQGKVNIAYKTYGSTVTVTAKSKKFPSYTATYQFKPNLWVFSGTMS 745
>sp|Q9CGE6|CLPX_LACLA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=clpX PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 19/93 (20%)
Query: 437 DSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA--KYASDLPTMCPR 494
D L E ++G E K L + Y H K NFA K A D+
Sbjct: 67 DHLNEYVIGQEK---------------AKRALAVAVYNHYKRINFAASKIAEDIELQKSN 111
Query: 495 ILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527
ILL GP GS + LA+ LAK + I D+
Sbjct: 112 ILLIGPTGSG--KTFLAQTLAKSLNVPFAIADA 142
>sp|Q4L1M7|HPAH_GEOP9 4-hydroxyphenylacetate 3-monooxygenase oxygenase component
OS=Geobacillus sp. (strain PA-9) GN=hpaH PE=3 SV=1
Length = 494
Score = 33.1 bits (74), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 215 LRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMS---ILEAQSAPLKTMHIEARSGD 271
L D+ +F+ + K+ Y + + D +L IHP M+ L Q+ +H+ R D
Sbjct: 121 LFAEDDPMFAENAKNYYEYAREHDISLTHTLIHPQMNRAKALHEQNDADVPLHLVERRKD 180
Query: 272 PSAVAGASILASLSNIQKDLSLIPPPTKAGVDAQN 306
V+G +LA+ I ++ + P K ++
Sbjct: 181 GIIVSGIRLLATQGGITDEILVFPSTVKKATSGED 215
>sp|A7ILC7|CLPX_XANP2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=clpX PE=3
SV=1
Length = 422
Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 411 QREIRELLKDSDRPTVLISAR---------RQAFKDSL---QEGILGPENIEVSFESFPY 458
Q E+R+L+ PTV I R+ K SL ++GI P+ I + +
Sbjct: 22 QHEVRKLIAG---PTVFICDECVELCMDIIREESKSSLVKSRDGIPTPKEIRKVLDDYVI 78
Query: 459 YLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGS--EIYQETLAKALAK 516
D K VL + + H K N A D+ ILL GP GS + +TLA+ L
Sbjct: 79 G-QDHAKKVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGSGKTLLAQTLARILDV 137
Query: 517 HFS 519
F+
Sbjct: 138 PFT 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,291,799
Number of Sequences: 539616
Number of extensions: 13126133
Number of successful extensions: 39911
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 39303
Number of HSP's gapped (non-prelim): 771
length of query: 779
length of database: 191,569,459
effective HSP length: 125
effective length of query: 654
effective length of database: 124,117,459
effective search space: 81172818186
effective search space used: 81172818186
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)