Query 004011
Match_columns 779
No_of_seqs 130 out of 134
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 11:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gxc_A CHK2, CDS1, serine/thre 99.8 1.9E-20 6.6E-25 176.4 13.6 111 129-240 25-145 (149)
2 1lgp_A Cell cycle checkpoint p 99.8 5.7E-19 2E-23 158.8 10.2 105 132-239 2-114 (116)
3 2jqj_A DNA damage response pro 99.7 3E-16 1E-20 148.0 12.8 109 127-239 11-125 (151)
4 3i6u_A CDS1, serine/threonine- 99.7 2.2E-16 7.5E-21 166.0 12.2 108 131-239 7-124 (419)
5 1g6g_A Protein kinase RAD53; b 99.7 5.6E-16 1.9E-20 142.2 12.5 102 131-236 2-120 (127)
6 4h87_A Kanadaptin; FHA domain 99.5 2.6E-14 8.7E-19 132.8 10.3 86 147-234 35-129 (130)
7 2pie_A E3 ubiquitin-protein li 99.5 6E-14 2.1E-18 130.6 11.2 104 129-237 5-118 (138)
8 1g3g_A Protien kinase SPK1; FH 99.5 1.2E-13 4.1E-18 132.4 13.3 104 130-237 29-149 (164)
9 1qu5_A Protein kinase SPK1; FH 99.4 2E-13 6.9E-18 133.6 9.5 105 130-235 25-146 (182)
10 3va4_A Mediator of DNA damage 99.4 4.1E-13 1.4E-17 125.2 10.8 103 128-236 18-126 (132)
11 1uht_A Expressed protein; FHA 99.4 5.7E-13 2E-17 120.3 11.1 94 129-227 7-105 (118)
12 1dmz_A Protein (protein kinase 99.4 8.2E-13 2.8E-17 126.1 10.7 101 134-235 5-122 (158)
13 2csw_A Ubiquitin ligase protei 99.4 5.8E-13 2E-17 125.1 8.4 103 129-236 13-125 (145)
14 1r21_A Antigen KI-67; beta san 99.4 5.8E-13 2E-17 122.0 7.7 101 128-238 6-110 (128)
15 3hx1_A SLR1951 protein; P74513 99.3 2.6E-12 8.8E-17 119.3 9.8 80 145-228 23-109 (131)
16 3els_A PRE-mRNA leakage protei 99.3 2.8E-12 9.5E-17 123.1 10.2 90 145-235 48-157 (158)
17 3po8_A RV0020C protein, putati 99.3 5.9E-12 2E-16 110.7 11.1 82 142-234 13-95 (100)
18 2xt9_B Putative signal transdu 99.3 9.5E-12 3.2E-16 112.2 12.3 84 143-237 22-106 (115)
19 2kb3_A Oxoglutarate dehydrogen 99.3 1.4E-11 4.9E-16 116.2 12.0 82 145-237 59-141 (143)
20 1mzk_A Kinase associated prote 99.3 1E-11 3.5E-16 115.7 9.7 78 153-236 33-119 (139)
21 2jpe_A Nuclear inhibitor of pr 99.3 1.3E-12 4.4E-17 121.7 3.5 85 146-234 48-135 (140)
22 4ejq_A Kinesin-like protein KI 99.3 2.4E-11 8.3E-16 115.7 12.1 84 148-236 57-144 (154)
23 3gqs_A Adenylate cyclase-like 99.3 2.2E-11 7.4E-16 108.3 10.5 81 146-235 18-101 (106)
24 3elv_A PRE-mRNA leakage protei 99.2 2.5E-11 8.6E-16 121.6 10.4 82 145-227 95-193 (205)
25 2kfu_A RV1827 PThr 22; FHA dom 99.2 5.8E-11 2E-15 114.5 12.3 83 144-237 67-150 (162)
26 2ff4_A Probable regulatory pro 99.2 6.1E-11 2.1E-15 125.7 12.5 96 130-236 285-381 (388)
27 3oun_A Putative uncharacterize 99.2 6.1E-11 2.1E-15 114.3 11.1 80 143-233 76-156 (157)
28 1wln_A Afadin; beta sandwich, 99.2 6.6E-11 2.2E-15 107.6 10.3 81 147-236 31-114 (120)
29 3fm8_A Kinesin-like protein KI 99.2 1.8E-10 6.2E-15 106.9 12.0 77 151-235 47-123 (124)
30 2brf_A Bifunctional polynucleo 99.0 2.6E-09 8.9E-14 98.1 10.8 96 134-235 9-106 (110)
31 3uv0_A Mutator 2, isoform B; F 98.9 1.9E-09 6.5E-14 97.9 7.7 70 144-221 12-82 (102)
32 3kt9_A Aprataxin; FHA domain, 98.9 8E-09 2.7E-13 93.6 11.2 95 134-234 4-99 (102)
33 1yj5_C 5' polynucleotide kinas 98.9 1.1E-08 3.8E-13 97.7 11.1 98 132-235 7-106 (143)
34 1ujx_A Polynucleotide kinase 3 98.8 6.9E-09 2.4E-13 96.5 7.3 100 131-236 13-114 (119)
35 4egx_A Kinesin-like protein KI 98.7 1.3E-07 4.5E-12 92.9 12.0 84 148-236 87-174 (184)
36 3huf_A DNA repair and telomere 98.3 1.4E-06 4.7E-11 92.6 9.4 80 147-228 16-107 (325)
37 1wv3_A Similar to DNA segregat 98.0 1.1E-05 3.8E-10 81.7 7.7 68 148-223 88-159 (238)
38 4b4t_M 26S protease regulatory 97.9 2.4E-05 8.2E-10 85.7 10.3 79 446-531 173-252 (434)
39 4a0e_A YSCD, type III secretio 97.9 2.1E-05 7.1E-10 73.7 7.9 82 144-236 16-98 (123)
40 4b4t_L 26S protease subunit RP 97.8 5E-05 1.7E-09 83.3 10.6 78 448-532 175-253 (437)
41 4b4t_I 26S protease regulatory 97.8 6.9E-05 2.3E-09 82.5 11.4 79 447-532 175-254 (437)
42 4b4t_K 26S protease regulatory 97.8 0.00011 3.8E-09 80.3 12.9 79 447-532 165-244 (428)
43 4b4t_J 26S protease regulatory 97.8 6.4E-05 2.2E-09 82.0 10.7 77 449-532 143-220 (405)
44 4b4t_H 26S protease regulatory 97.7 0.00015 5.3E-09 80.3 11.3 78 448-532 203-281 (467)
45 3cf2_A TER ATPase, transitiona 97.5 0.00024 8.1E-09 83.3 10.4 74 449-529 472-546 (806)
46 2qp9_X Vacuolar protein sortin 96.1 0.0044 1.5E-07 64.8 5.2 91 435-533 33-123 (355)
47 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.011 3.8E-07 61.0 7.6 80 447-533 5-85 (322)
48 3b9p_A CG5977-PA, isoform A; A 95.9 0.014 4.7E-07 58.1 7.4 91 436-534 4-94 (297)
49 3d8b_A Fidgetin-like protein 1 95.6 0.021 7.3E-07 59.5 7.7 87 439-533 70-156 (357)
50 2zan_A Vacuolar protein sortin 95.6 0.014 4.7E-07 63.1 6.3 91 435-533 116-207 (444)
51 3eie_A Vacuolar protein sortin 95.6 0.01 3.5E-07 60.7 5.1 79 447-532 11-89 (322)
52 3vfd_A Spastin; ATPase, microt 95.4 0.014 4.9E-07 61.2 5.4 92 435-534 97-188 (389)
53 3cf2_A TER ATPase, transitiona 95.3 0.0087 3E-07 70.3 4.0 77 450-532 200-276 (806)
54 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.045 1.5E-06 52.8 6.6 75 450-532 2-77 (262)
55 3h4m_A Proteasome-activating n 94.0 0.053 1.8E-06 53.4 5.3 80 448-534 11-91 (285)
56 3hws_A ATP-dependent CLP prote 94.0 0.03 1E-06 57.9 3.7 69 461-531 20-88 (363)
57 1g41_A Heat shock protein HSLU 94.0 0.042 1.4E-06 60.6 4.9 69 461-532 20-88 (444)
58 3cf0_A Transitional endoplasmi 93.6 0.037 1.3E-06 56.2 3.4 77 448-531 9-86 (301)
59 2r62_A Cell division protease 93.5 0.032 1.1E-06 54.6 2.7 81 444-532 1-82 (268)
60 1lv7_A FTSH; alpha/beta domain 93.2 0.087 3E-06 51.4 5.3 79 446-532 4-83 (257)
61 3pie_A 5'->3' exoribonuclease 93.2 0.052 1.8E-06 66.0 4.3 80 584-673 1051-1130(1155)
62 2x8a_A Nuclear valosin-contain 92.8 0.083 2.8E-06 53.5 4.5 77 450-532 6-82 (274)
63 1um8_A ATP-dependent CLP prote 91.3 0.094 3.2E-06 54.4 3.0 69 461-531 26-109 (376)
64 3t15_A Ribulose bisphosphate c 90.8 0.15 5.1E-06 51.8 3.9 38 493-532 37-74 (293)
65 2dhr_A FTSH; AAA+ protein, hex 90.0 0.32 1.1E-05 54.2 5.8 76 449-532 26-102 (499)
66 1ofh_A ATP-dependent HSL prote 89.9 0.1 3.6E-06 51.2 1.8 69 461-532 20-88 (310)
67 2ce7_A Cell division protein F 89.6 0.37 1.2E-05 53.4 5.9 82 443-532 4-87 (476)
68 1ixz_A ATP-dependent metallopr 87.5 0.35 1.2E-05 47.1 3.6 77 446-530 8-85 (254)
69 3syl_A Protein CBBX; photosynt 85.8 0.56 1.9E-05 46.5 4.1 49 484-534 59-114 (309)
70 1sxj_A Activator 1 95 kDa subu 85.7 1.1 3.6E-05 49.3 6.5 48 483-532 68-115 (516)
71 3hu3_A Transitional endoplasmi 85.5 0.45 1.5E-05 52.6 3.5 76 451-532 201-276 (489)
72 2c9o_A RUVB-like 1; hexameric 85.4 0.53 1.8E-05 50.8 3.9 42 492-535 63-106 (456)
73 2w58_A DNAI, primosome compone 84.4 0.73 2.5E-05 43.0 3.9 83 435-528 6-91 (202)
74 1ypw_A Transitional endoplasmi 83.9 0.92 3.1E-05 53.0 5.3 78 450-533 473-550 (806)
75 2bjv_A PSP operon transcriptio 83.6 1.4 4.9E-05 43.0 5.8 63 451-530 3-68 (265)
76 1iy2_A ATP-dependent metallopr 82.3 0.91 3.1E-05 45.1 3.9 75 448-530 34-109 (278)
77 1ypw_A Transitional endoplasmi 81.9 0.92 3.2E-05 52.9 4.3 76 450-532 200-276 (806)
78 1d2n_A N-ethylmaleimide-sensit 80.6 0.87 3E-05 44.8 3.0 37 491-529 63-99 (272)
79 3n70_A Transport activator; si 79.4 1.3 4.5E-05 39.9 3.6 40 490-532 22-64 (145)
80 3u61_B DNA polymerase accessor 78.0 3.4 0.00012 41.5 6.4 35 493-529 49-83 (324)
81 3bos_A Putative DNA replicatio 78.0 2.9 9.9E-05 39.0 5.6 38 492-531 52-92 (242)
82 2y35_A LD22664P; hydrolase-DNA 76.3 1.2 4.2E-05 54.4 3.1 66 596-672 1056-1133(1140)
83 2q5w_D Molybdopterin convertin 75.0 2.1 7.1E-05 35.2 3.3 26 199-226 48-73 (77)
84 3pfi_A Holliday junction ATP-d 74.0 2.2 7.7E-05 42.9 3.9 38 492-531 55-92 (338)
85 1hqc_A RUVB; extended AAA-ATPa 70.9 2.3 7.7E-05 42.4 3.0 37 492-530 38-74 (324)
86 1qhx_A CPT, protein (chloramph 70.6 2.8 9.7E-05 38.0 3.4 33 493-527 4-36 (178)
87 1jbk_A CLPB protein; beta barr 70.5 3.1 0.00011 36.9 3.5 25 492-518 43-67 (195)
88 2r44_A Uncharacterized protein 69.9 4.3 0.00015 41.0 4.9 34 493-528 47-80 (331)
89 4fcw_A Chaperone protein CLPB; 69.5 2.8 9.7E-05 41.4 3.4 37 493-531 48-87 (311)
90 2g1e_A Hypothetical protein TA 68.5 2.2 7.5E-05 35.9 2.0 27 199-225 57-85 (90)
91 2k6p_A Uncharacterized protein 68.4 3.2 0.00011 35.5 3.1 30 197-228 25-54 (92)
92 3po0_A Small archaeal modifier 68.2 2.7 9.1E-05 35.7 2.5 26 199-226 60-85 (89)
93 3co5_A Putative two-component 67.9 1 3.5E-05 40.7 -0.2 36 492-530 27-62 (143)
94 2cu3_A Unknown function protei 67.4 2.3 7.8E-05 34.5 1.8 27 199-225 31-59 (64)
95 3crm_A TRNA delta(2)-isopenten 67.4 3.1 0.00011 44.1 3.3 39 492-532 5-43 (323)
96 2qgz_A Helicase loader, putati 67.1 2.9 9.9E-05 43.0 3.0 35 492-528 152-190 (308)
97 1ryj_A Unknown; beta/alpha pro 66.6 3.9 0.00013 33.8 3.2 25 199-225 41-65 (70)
98 3trf_A Shikimate kinase, SK; a 66.4 2.7 9.3E-05 38.5 2.4 34 492-527 5-38 (185)
99 3rpf_C Molybdopterin convertin 66.2 2.9 9.9E-05 34.6 2.3 28 198-226 43-70 (74)
100 2p65_A Hypothetical protein PF 65.2 4.3 0.00015 36.1 3.4 25 492-518 43-67 (187)
101 1fm0_D Molybdopterin convertin 65.1 3.5 0.00012 34.1 2.6 26 199-226 52-77 (81)
102 3dwg_C 9.5 kDa culture filtrat 64.4 3.3 0.00011 35.4 2.4 28 199-226 60-89 (93)
103 2iyv_A Shikimate kinase, SK; t 64.1 3.4 0.00011 37.9 2.5 32 493-526 3-34 (184)
104 1r6b_X CLPA protein; AAA+, N-t 63.1 4.3 0.00015 46.2 3.7 36 494-531 490-525 (758)
105 2l52_A Methanosarcina acetivor 62.9 2.7 9.4E-05 36.9 1.6 28 199-226 66-95 (99)
106 3iij_A Coilin-interacting nucl 62.6 3.7 0.00013 37.6 2.5 34 492-527 11-44 (180)
107 3foz_A TRNA delta(2)-isopenten 62.4 4.2 0.00014 43.3 3.2 39 492-532 10-48 (316)
108 1vjk_A Molybdopterin convertin 62.0 3.6 0.00012 35.9 2.2 26 199-226 69-94 (98)
109 3ec2_A DNA replication protein 61.9 9.1 0.00031 35.1 5.0 25 492-518 38-62 (180)
110 2chg_A Replication factor C sm 61.8 6.5 0.00022 35.6 3.9 34 494-529 40-78 (226)
111 2qjl_A URM1, ubiquitin-related 61.8 3.9 0.00013 35.8 2.4 27 199-225 66-94 (99)
112 2ze6_A Isopentenyl transferase 60.8 4.4 0.00015 40.2 2.9 36 494-531 3-38 (253)
113 1via_A Shikimate kinase; struc 60.4 4.2 0.00014 37.2 2.5 32 493-526 5-36 (175)
114 1rws_A Hypothetical protein PF 60.4 2.5 8.5E-05 35.5 0.8 26 199-226 48-73 (77)
115 1g8p_A Magnesium-chelatase 38 58.8 5.3 0.00018 40.1 3.0 52 450-520 20-71 (350)
116 1dm9_A Hypothetical 15.5 KD pr 58.0 7 0.00024 36.4 3.5 30 196-227 32-61 (133)
117 3uk6_A RUVB-like 2; hexameric 56.9 6.6 0.00022 39.8 3.4 38 704-744 189-226 (368)
118 3pxi_A Negative regulator of g 56.8 6.3 0.00021 45.1 3.6 37 494-532 523-562 (758)
119 2cdn_A Adenylate kinase; phosp 56.5 6 0.0002 37.0 2.8 32 493-526 21-52 (201)
120 1l8q_A Chromosomal replication 56.2 4.5 0.00016 40.7 2.1 38 491-530 36-76 (324)
121 3a8t_A Adenylate isopentenyltr 55.5 5.8 0.0002 42.5 2.9 37 494-532 42-78 (339)
122 2chq_A Replication factor C sm 55.0 5.6 0.00019 39.0 2.5 37 494-532 40-81 (319)
123 1f0z_A THis protein; ubiquitin 53.0 2.8 9.5E-05 34.1 -0.1 27 199-225 33-61 (66)
124 1e6c_A Shikimate kinase; phosp 52.3 7.2 0.00025 35.0 2.5 32 493-526 3-34 (173)
125 3dl0_A Adenylate kinase; phosp 51.9 6.6 0.00022 37.0 2.3 31 494-526 2-32 (216)
126 1tyg_B YJBS; alpha beta barrel 51.7 5.4 0.00018 35.0 1.5 27 199-225 54-82 (87)
127 3fb4_A Adenylate kinase; psych 51.4 6.6 0.00022 36.9 2.2 31 494-526 2-32 (216)
128 3vaa_A Shikimate kinase, SK; s 51.1 7 0.00024 36.7 2.3 34 492-527 25-58 (199)
129 3exa_A TRNA delta(2)-isopenten 50.6 6.8 0.00023 41.8 2.4 37 493-531 4-40 (322)
130 3pvs_A Replication-associated 49.0 12 0.00042 40.7 4.1 33 493-527 51-83 (447)
131 1wgk_A Riken cDNA 2900073H19 p 48.0 5.7 0.0002 36.3 1.2 26 200-225 76-103 (114)
132 3pxg_A Negative regulator of g 47.9 8 0.00027 42.0 2.5 34 493-528 202-245 (468)
133 2pt5_A Shikimate kinase, SK; a 47.8 8.3 0.00028 34.6 2.2 31 494-526 2-32 (168)
134 2v1u_A Cell division control p 47.7 15 0.00051 36.8 4.2 38 491-530 43-89 (387)
135 2rhm_A Putative kinase; P-loop 47.7 7.4 0.00025 35.5 1.9 32 493-526 6-37 (193)
136 3t61_A Gluconokinase; PSI-biol 47.2 12 0.00039 35.1 3.2 33 492-526 18-50 (202)
137 3d3q_A TRNA delta(2)-isopenten 47.1 9.8 0.00033 40.6 2.9 38 493-532 8-45 (340)
138 3kb2_A SPBC2 prophage-derived 47.0 11 0.00037 33.5 2.8 31 494-526 3-33 (173)
139 1wv3_A Similar to DNA segregat 46.8 19 0.00066 36.3 4.9 56 145-221 13-69 (238)
140 1qvr_A CLPB protein; coiled co 46.4 11 0.00037 44.0 3.4 38 493-532 589-629 (854)
141 2bwj_A Adenylate kinase 5; pho 45.9 9.1 0.00031 35.1 2.2 32 493-526 13-44 (199)
142 1ak2_A Adenylate kinase isoenz 45.8 11 0.00039 36.3 2.9 33 492-526 16-48 (233)
143 2qby_B CDC6 homolog 3, cell di 45.7 15 0.00052 37.1 4.0 37 492-530 45-92 (384)
144 2k9x_A Tburm1, uncharacterized 45.7 7.6 0.00026 35.3 1.6 26 200-225 70-97 (110)
145 1ojl_A Transcriptional regulat 44.7 15 0.00052 37.5 3.8 39 490-530 23-64 (304)
146 2c95_A Adenylate kinase 1; tra 44.5 10 0.00034 34.7 2.2 33 492-526 9-41 (196)
147 1sxj_B Activator 1 37 kDa subu 44.3 12 0.0004 36.8 2.8 33 495-529 45-82 (323)
148 2cow_A Kinesin-like protein KI 44.0 89 0.003 28.3 8.2 36 643-679 53-94 (100)
149 2z4s_A Chromosomal replication 44.0 9.2 0.00031 41.3 2.2 37 492-530 130-171 (440)
150 1e4v_A Adenylate kinase; trans 44.0 9.1 0.00031 36.3 1.9 31 494-526 2-32 (214)
151 1zuh_A Shikimate kinase; alpha 43.9 11 0.00036 34.2 2.3 32 493-526 8-39 (168)
152 1sxj_D Activator 1 41 kDa subu 43.5 18 0.00061 36.1 4.1 35 494-530 60-100 (353)
153 1v8c_A MOAD related protein; r 43.3 10 0.00035 36.6 2.2 28 199-226 54-83 (168)
154 1aky_A Adenylate kinase; ATP:A 42.7 13 0.00045 35.2 2.8 32 493-526 5-36 (220)
155 3eph_A TRNA isopentenyltransfe 42.6 11 0.00038 41.4 2.6 38 493-532 3-40 (409)
156 1zd8_A GTP:AMP phosphotransfer 42.5 11 0.00039 36.0 2.3 32 493-526 8-39 (227)
157 2kjq_A DNAA-related protein; s 42.3 17 0.00058 33.4 3.4 38 491-530 35-75 (149)
158 1jcu_A Conserved protein MTH16 42.2 30 0.001 34.2 5.3 67 663-743 34-101 (208)
159 1kht_A Adenylate kinase; phosp 41.9 12 0.0004 33.9 2.2 25 493-519 4-28 (192)
160 2k5p_A THis protein, thiamine- 41.7 14 0.00046 31.6 2.5 27 199-225 36-64 (78)
161 3be4_A Adenylate kinase; malar 40.5 12 0.0004 35.8 2.1 32 493-526 6-37 (217)
162 1ly1_A Polynucleotide kinase; 40.3 10 0.00034 34.0 1.5 31 494-526 4-35 (181)
163 1hru_A YRDC gene product; prot 40.0 33 0.0011 33.2 5.2 55 686-743 39-98 (188)
164 2fna_A Conserved hypothetical 39.9 44 0.0015 32.9 6.2 54 690-744 124-179 (357)
165 3lw7_A Adenylate kinase relate 39.6 14 0.00047 32.5 2.2 31 493-526 2-32 (179)
166 1fnn_A CDC6P, cell division co 39.6 23 0.00077 35.7 4.1 36 493-530 45-84 (389)
167 2p65_A Hypothetical protein PF 39.5 41 0.0014 29.7 5.4 54 690-747 103-162 (187)
168 1uj2_A Uridine-cytidine kinase 39.5 16 0.00056 35.7 3.0 38 493-532 23-68 (252)
169 2qz4_A Paraplegin; AAA+, SPG7, 39.4 22 0.00074 34.0 3.8 57 689-748 86-156 (262)
170 2qp9_X Vacuolar protein sortin 39.2 47 0.0016 34.5 6.6 58 688-748 130-198 (355)
171 1y63_A LMAJ004144AAA protein; 39.1 15 0.00051 34.1 2.5 33 492-526 10-43 (184)
172 1tev_A UMP-CMP kinase; ploop, 38.6 15 0.0005 33.3 2.3 32 493-526 4-35 (196)
173 1in4_A RUVB, holliday junction 38.5 23 0.00077 36.4 4.0 35 493-529 52-86 (334)
174 1qvr_A CLPB protein; coiled co 38.4 15 0.00052 42.8 3.0 37 493-531 192-238 (854)
175 1tue_A Replication protein E1; 38.3 15 0.00053 37.1 2.6 34 492-527 58-91 (212)
176 1p9k_A ORF, hypothetical prote 38.1 9.3 0.00032 32.0 0.9 27 196-223 44-70 (79)
177 3m6a_A ATP-dependent protease 38.0 20 0.0007 39.8 3.8 37 491-529 107-143 (543)
178 3eie_A Vacuolar protein sortin 37.5 64 0.0022 32.7 7.1 59 687-748 96-165 (322)
179 2p5t_B PEZT; postsegregational 37.5 14 0.00047 36.4 2.1 36 493-530 33-68 (253)
180 1ukz_A Uridylate kinase; trans 37.2 16 0.00054 33.9 2.4 32 493-526 16-47 (203)
181 3tlx_A Adenylate kinase 2; str 37.2 15 0.00052 36.0 2.4 32 493-526 30-61 (243)
182 1gvn_B Zeta; postsegregational 36.9 14 0.00049 37.4 2.2 33 493-527 34-66 (287)
183 1iqp_A RFCS; clamp loader, ext 36.4 16 0.00053 36.0 2.3 32 494-527 48-84 (327)
184 3cm0_A Adenylate kinase; ATP-b 36.3 14 0.00048 33.6 1.8 31 493-525 5-35 (186)
185 3pxi_A Negative regulator of g 36.1 14 0.0005 42.2 2.3 24 493-518 202-225 (758)
186 1xwi_A SKD1 protein; VPS4B, AA 36.0 70 0.0024 32.8 7.1 57 689-748 93-160 (322)
187 1a5t_A Delta prime, HOLB; zinc 35.8 17 0.00058 37.3 2.5 27 492-520 24-50 (334)
188 1u0j_A DNA replication protein 35.7 16 0.00056 37.8 2.4 27 492-520 104-130 (267)
189 2qby_A CDC6 homolog 1, cell di 35.7 28 0.00095 34.7 4.0 37 490-528 43-85 (386)
190 1qf9_A UMP/CMP kinase, protein 35.6 16 0.00053 33.1 2.0 31 493-525 7-37 (194)
191 2vli_A Antibiotic resistance p 35.6 18 0.00061 32.7 2.4 29 493-523 6-34 (183)
192 1njg_A DNA polymerase III subu 35.1 17 0.00057 33.1 2.1 26 493-520 46-71 (250)
193 1njg_A DNA polymerase III subu 35.0 64 0.0022 29.2 6.0 53 690-745 111-164 (250)
194 1c05_A Ribosomal protein S4 de 34.5 22 0.00074 34.0 2.9 28 197-225 75-102 (159)
195 3vfd_A Spastin; ATPase, microt 34.5 52 0.0018 34.3 6.0 58 688-748 194-263 (389)
196 3a4m_A L-seryl-tRNA(SEC) kinas 34.3 25 0.00085 34.8 3.4 34 493-528 5-41 (260)
197 2xb4_A Adenylate kinase; ATP-b 33.9 18 0.00062 34.7 2.3 31 494-526 2-32 (223)
198 1kag_A SKI, shikimate kinase I 33.9 27 0.00092 31.3 3.3 32 492-527 4-35 (173)
199 2kl0_A Putative thiamin biosyn 33.4 11 0.00039 31.7 0.6 27 199-225 32-60 (73)
200 1zak_A Adenylate kinase; ATP:A 33.4 16 0.00055 34.6 1.8 29 493-523 6-34 (222)
201 3nbx_X ATPase RAVA; AAA+ ATPas 32.7 19 0.00065 40.0 2.5 26 493-520 42-67 (500)
202 1jr3_A DNA polymerase III subu 32.6 21 0.00073 35.9 2.6 26 493-520 39-64 (373)
203 2pbr_A DTMP kinase, thymidylat 32.4 30 0.001 31.3 3.3 31 494-526 2-35 (195)
204 3f8t_A Predicted ATPase involv 32.1 45 0.0015 37.8 5.3 72 409-518 191-263 (506)
205 1nks_A Adenylate kinase; therm 31.8 18 0.00063 32.6 1.8 32 494-527 3-37 (194)
206 2v54_A DTMP kinase, thymidylat 31.5 33 0.0011 31.5 3.5 33 492-526 4-37 (204)
207 1sxj_E Activator 1 40 kDa subu 31.3 39 0.0013 33.9 4.3 22 495-518 39-60 (354)
208 1k7j_A Protein YCIO, protein T 31.2 35 0.0012 33.6 3.9 54 686-744 46-103 (206)
209 2zan_A Vacuolar protein sortin 30.7 62 0.0021 34.8 6.0 57 689-748 215-282 (444)
210 3ake_A Cytidylate kinase; CMP 30.1 26 0.0009 32.2 2.6 32 493-526 3-34 (208)
211 3h4m_A Proteasome-activating n 29.8 89 0.0031 30.4 6.5 58 688-748 97-167 (285)
212 2plr_A DTMP kinase, probable t 29.8 36 0.0012 31.2 3.4 32 493-526 5-38 (213)
213 2gno_A DNA polymerase III, gam 29.8 29 0.001 35.7 3.1 34 492-527 18-57 (305)
214 2jaq_A Deoxyguanosine kinase; 29.5 32 0.0011 31.4 3.0 28 494-523 2-29 (205)
215 1w5s_A Origin recognition comp 29.5 55 0.0019 33.3 5.1 52 689-742 125-184 (412)
216 2qen_A Walker-type ATPase; unk 28.9 67 0.0023 31.6 5.4 42 704-745 128-174 (350)
217 2qmh_A HPR kinase/phosphorylas 28.2 18 0.00062 36.4 1.2 44 485-531 27-70 (205)
218 2vqe_D 30S ribosomal protein S 27.9 31 0.0011 34.5 2.8 28 196-224 122-149 (209)
219 1r6b_X CLPA protein; AAA+, N-t 27.5 37 0.0013 38.7 3.7 38 492-531 207-254 (758)
220 1d2n_A N-ethylmaleimide-sensit 27.5 79 0.0027 30.8 5.6 56 690-748 113-178 (272)
221 3te6_A Regulatory protein SIR3 27.0 57 0.0019 34.3 4.8 37 492-530 45-91 (318)
222 1ksk_A Ribosomal small subunit 26.8 34 0.0012 33.7 2.9 27 197-224 27-53 (234)
223 2va8_A SSO2462, SKI2-type heli 26.6 67 0.0023 36.1 5.6 72 450-525 7-81 (715)
224 1sxj_C Activator 1 40 kDa subu 26.6 33 0.0011 34.9 2.8 33 495-529 49-86 (340)
225 2if2_A Dephospho-COA kinase; a 26.5 29 0.001 32.1 2.2 32 493-527 2-33 (204)
226 2z0h_A DTMP kinase, thymidylat 26.4 44 0.0015 30.4 3.4 31 494-526 2-35 (197)
227 1vio_A Ribosomal small subunit 26.4 35 0.0012 34.0 2.9 26 197-223 26-51 (243)
228 2pez_A Bifunctional 3'-phospho 26.4 45 0.0015 30.4 3.4 37 492-530 5-44 (179)
229 2v1u_A Cell division control p 26.2 83 0.0028 31.4 5.6 57 689-747 117-177 (387)
230 1jbk_A CLPB protein; beta barr 26.2 1.2E+02 0.004 26.6 6.0 51 690-744 103-158 (195)
231 2pl3_A Probable ATP-dependent 25.5 97 0.0033 29.3 5.7 59 451-515 25-88 (236)
232 3ly5_A ATP-dependent RNA helic 25.4 36 0.0012 33.5 2.7 64 449-516 50-118 (262)
233 1knq_A Gluconate kinase; ALFA/ 25.1 37 0.0013 30.7 2.6 35 492-530 8-42 (175)
234 2e6z_A Transcription elongatio 25.0 63 0.0022 26.2 3.7 38 594-648 3-40 (59)
235 1ex7_A Guanylate kinase; subst 24.6 40 0.0014 32.6 2.9 29 492-522 1-29 (186)
236 1hv8_A Putative ATP-dependent 24.5 24 0.00082 34.9 1.3 70 451-525 6-80 (367)
237 3hvz_A Uncharacterized protein 24.4 39 0.0013 29.0 2.4 26 200-227 44-69 (78)
238 3b9p_A CG5977-PA, isoform A; A 24.4 1.4E+02 0.0047 29.3 6.7 58 688-748 100-170 (297)
239 2dpr_A CON-T(K7GLA); conantoxi 24.3 29 0.00099 24.4 1.3 10 502-511 1-10 (26)
240 3r20_A Cytidylate kinase; stru 23.9 41 0.0014 33.8 2.9 35 493-531 10-44 (233)
241 3d8b_A Fidgetin-like protein 1 23.4 1E+02 0.0036 31.8 5.9 58 688-748 163-232 (357)
242 3bor_A Human initiation factor 23.1 43 0.0015 32.1 2.7 64 446-515 25-93 (237)
243 2zj8_A DNA helicase, putative 22.9 68 0.0023 36.3 4.7 69 451-525 1-74 (720)
244 3sr0_A Adenylate kinase; phosp 22.9 45 0.0015 32.5 2.9 28 494-523 2-29 (206)
245 2kmm_A Guanosine-3',5'-BIS(dip 22.8 47 0.0016 26.5 2.6 24 200-225 39-62 (73)
246 2p6r_A Afuhel308 helicase; pro 22.7 33 0.0011 38.6 2.2 69 451-525 1-74 (702)
247 4i4a_A Similar to unknown prot 22.7 1.4E+02 0.0047 25.6 5.7 38 188-231 55-92 (128)
248 3fdi_A Uncharacterized protein 22.6 43 0.0015 32.2 2.6 33 493-530 7-39 (201)
249 2kd2_A FAS apoptotic inhibitor 22.5 57 0.002 29.5 3.2 47 187-236 24-70 (94)
250 3dh3_A Ribosomal large subunit 22.4 43 0.0015 34.9 2.7 27 196-224 29-55 (290)
251 1jr3_A DNA polymerase III subu 22.3 1.6E+02 0.0054 29.5 6.8 52 691-745 105-157 (373)
252 2cqj_A BRMS2, U3 small nucleol 22.2 28 0.00097 29.1 1.1 29 197-225 32-61 (71)
253 2gxq_A Heat resistant RNA depe 22.1 56 0.0019 29.9 3.2 57 452-514 2-63 (207)
254 2chg_A Replication factor C sm 21.9 2.1E+02 0.0073 25.5 7.0 40 702-744 100-139 (226)
255 2ozj_A Cupin 2, conserved barr 21.9 1.2E+02 0.0041 25.6 5.1 39 189-233 60-98 (114)
256 2arc_A ARAC, arabinose operon 21.8 1.5E+02 0.0052 25.9 5.9 41 187-233 38-78 (164)
257 2i45_A Hypothetical protein; n 21.6 1.4E+02 0.0049 24.9 5.4 40 189-233 50-89 (107)
258 1q3t_A Cytidylate kinase; nucl 21.5 50 0.0017 31.8 2.9 35 487-523 11-45 (236)
259 3bbn_D Ribosomal protein S4; s 21.4 42 0.0014 33.6 2.3 31 196-227 112-142 (201)
260 2bbw_A Adenylate kinase 4, AK4 21.2 50 0.0017 31.9 2.8 37 483-521 18-54 (246)
261 1o5u_A Novel thermotoga mariti 20.9 1.2E+02 0.0042 26.3 5.0 39 189-232 51-89 (101)
262 3cf0_A Transitional endoplasmi 20.7 1E+02 0.0035 30.9 5.1 56 690-748 97-165 (301)
263 3t15_A Ribulose bisphosphate c 20.5 1E+02 0.0036 31.0 5.1 47 702-748 97-166 (293)
264 2qby_A CDC6 homolog 1, cell di 20.3 1.6E+02 0.0056 29.1 6.4 54 689-744 115-170 (386)
265 3umf_A Adenylate kinase; rossm 20.2 54 0.0018 32.5 2.8 29 493-523 30-58 (217)
266 3fjs_A Uncharacterized protein 20.1 1.5E+02 0.0053 25.5 5.5 38 189-232 58-95 (114)
267 1y9q_A Transcriptional regulat 20.1 1.4E+02 0.0049 27.7 5.6 38 188-231 127-164 (192)
No 1
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.83 E-value=1.9e-20 Score=176.44 Aligned_cols=111 Identities=24% Similarity=0.366 Sum_probs=97.9
Q ss_pred CCcccceeeeccCCCCCceeeecceEEEecccccceeecCCC---------cccceeEEEEEecCC-CceEEEEEecCCc
Q 004011 129 GSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENGG-PSGALLEITGGKG 198 (779)
Q Consensus 129 ~~~~pWGRLlSq~sq~P~v~I~~~~fTvGR~~~CDl~L~d~~---------iS~~hCkI~r~e~gg-~~va~LEd~ssNG 198 (779)
....+||+|++++..++.+.|....|+|||+..||++|.+.. ||..||+|.+...++ ...++|+|+|+||
T Consensus 25 ~~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNG 104 (149)
T 1gxc_A 25 PTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNG 104 (149)
T ss_dssp ----CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSC
T ss_pred CCCCeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCC
Confidence 445689999999999999999999999999999999999984 999999999875432 3469999999999
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEccCCCeeEEEeecCccc
Q 004011 199 EVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (779)
Q Consensus 199 tV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIFq~l~~e~ 240 (779)
| ||||++|.+|..+.|++||+|.|+.+...+|+|+++..++
T Consensus 105 T-~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 105 T-FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp E-EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred e-EECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 6 9999999999999999999999999988999999987653
No 2
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.78 E-value=5.7e-19 Score=158.78 Aligned_cols=105 Identities=27% Similarity=0.463 Sum_probs=91.7
Q ss_pred ccceeeeccCC--CCCceeeecceEEEecccccceeecCC-CcccceeEEEEEecCCCceEEEEEecCCceEEECCeecC
Q 004011 132 IPWARLISQCS--QNSHLSMTGAVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHP 208 (779)
Q Consensus 132 ~pWGRLlSq~s--q~P~v~I~~~~fTvGR~~~CDl~L~d~-~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVg 208 (779)
.+||+|+++.+ ..+.+.|....++|||+..||++|.+. .||..||+|.+...++ .++|+|.|.||| ||||++|.
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~--~~~l~D~S~NGt-~vng~~l~ 78 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSG--QVTLEDTSTSGT-VINKLKVV 78 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTC--CEEEEECSSSCC-CCCCCCCC
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCC--eEEEEECCcCCc-EECCEEcC
Confidence 68999999976 667899999999999999999999875 8999999999853233 389999777996 99999999
Q ss_pred CCceEEeeCCCEEEEccCC-----CeeEEEeecCcc
Q 004011 209 KDSQVVLRGGDELVFSPSG-----KHSYIFQQLSDD 239 (779)
Q Consensus 209 Kg~kviL~nGDEIvfs~~~-----~~aYIFq~l~~e 239 (779)
++..+.|+.||+|.|+... ..+|+|+++..+
T Consensus 79 ~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~ 114 (116)
T 1lgp_A 79 KKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEK 114 (116)
T ss_dssp CSSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC-
T ss_pred CCCcEECCCCCEEEEeccCCCCCceEEEEEEccccc
Confidence 9999999999999999865 789999988654
No 3
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.67 E-value=3e-16 Score=148.00 Aligned_cols=109 Identities=24% Similarity=0.386 Sum_probs=89.3
Q ss_pred CCCCcccceeeeccCC-CCCceeeec-ceEEEecccccceeecCCCcccceeEEEEEe--cC--CCceEEEEEecCCceE
Q 004011 127 KVGSRIPWARLISQCS-QNSHLSMTG-AVFTVGHNRQCDLYLKDPSISKNLCRLRRIE--NG--GPSGALLEITGGKGEV 200 (779)
Q Consensus 127 k~~~~~pWGRLlSq~s-q~P~v~I~~-~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e--~g--g~~va~LEd~ssNGtV 200 (779)
.+....+|++|+.+.+ ....+.|.. ..|+|||...|||+|.+..||..||+|.... .+ ....++|+|+|.|||
T Consensus 11 ~~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT- 89 (151)
T 2jqj_A 11 PSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGT- 89 (151)
T ss_dssp CSSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCE-
T ss_pred CCCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCe-
Confidence 4567789999998876 455678874 8999999999999999999999999999841 11 223589999988996
Q ss_pred EECCeecCCCceEEeeCCCEEEEccCCCeeEEEeecCcc
Q 004011 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDD 239 (779)
Q Consensus 201 ~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIFq~l~~e 239 (779)
||||++|.++ .+.|++||+|.|+.. ..|+|......
T Consensus 90 ~VNg~~i~~~-~~~L~~GD~I~lG~~--~~~~f~~~~~~ 125 (151)
T 2jqj_A 90 FINGNRLVKK-DYILKNGDRIVFGKS--CSFLFKYASSS 125 (151)
T ss_dssp EETTEECCSS-CEEECSSEEEEETTT--EEEEEEECSSC
T ss_pred EECCEEcCCC-ceECCCCCEEEECCC--cEEEEEEcCCC
Confidence 9999999999 999999999999762 45777665444
No 4
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.66 E-value=2.2e-16 Score=166.02 Aligned_cols=108 Identities=25% Similarity=0.389 Sum_probs=97.9
Q ss_pred cccceeeeccCCCCCceeeecceEEEecccccceeecCCCc---------ccceeEEEEEe-cCCCceEEEEEecCCceE
Q 004011 131 RIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSI---------SKNLCRLRRIE-NGGPSGALLEITGGKGEV 200 (779)
Q Consensus 131 ~~pWGRLlSq~sq~P~v~I~~~~fTvGR~~~CDl~L~d~~i---------S~~hCkI~r~e-~gg~~va~LEd~ssNGtV 200 (779)
..+||+|++....++.++|.++.|+|||+..||++|.|+.+ |+.||.|++.. ..+..++||+|.|+|||
T Consensus 7 ~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt- 85 (419)
T 3i6u_A 7 PAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT- 85 (419)
T ss_dssp CCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCE-
T ss_pred CCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCc-
Confidence 45899999999999999999999999999999999999865 99999998864 33456799999999996
Q ss_pred EECCeecCCCceEEeeCCCEEEEccCCCeeEEEeecCcc
Q 004011 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDD 239 (779)
Q Consensus 201 ~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIFq~l~~e 239 (779)
||||++++++.+..|++||+|.|+....+.|+|.++..+
T Consensus 86 ~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~~ 124 (419)
T 3i6u_A 86 FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVD 124 (419)
T ss_dssp EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEESCSS
T ss_pred eECcccccCCCcccCCCCCEeeeeccccceEEEeccccc
Confidence 999999999999999999999999999999999987543
No 5
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.66 E-value=5.6e-16 Score=142.19 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=89.4
Q ss_pred cccceeeeccCCCCCceeeecc-------------eEEEecccccceeecCC-CcccceeEEEEEecCCCceEEEEEecC
Q 004011 131 RIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGG 196 (779)
Q Consensus 131 ~~pWGRLlSq~sq~P~v~I~~~-------------~fTvGR~~~CDl~L~d~-~iS~~hCkI~r~e~gg~~va~LEd~ss 196 (779)
..+||||.++..++|.+.|..+ .++|||+..||++|.+. .||..||+|...+.+ .++|+|+|.
T Consensus 2 ~~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~g---~~~l~DlS~ 78 (127)
T 1g6g_A 2 ENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG---NLLLNDIST 78 (127)
T ss_dssp CEEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTTS---CEEEEECCS
T ss_pred CceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCCC---cEEEEECCc
Confidence 3579999999999999999888 99999999999999997 599999999974333 289999988
Q ss_pred CceEEECCeecCCCceEEeeCCCEEEEccCC---CeeEEEeec
Q 004011 197 KGEVEVNGNVHPKDSQVVLRGGDELVFSPSG---KHSYIFQQL 236 (779)
Q Consensus 197 NGtV~VNGkkVgKg~kviL~nGDEIvfs~~~---~~aYIFq~l 236 (779)
||| ||||+++.++..+.|+.||+|.|+... ...|+|+..
T Consensus 79 NGT-~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~~ 120 (127)
T 1g6g_A 79 NGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIN 120 (127)
T ss_dssp SCC-EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEEC
T ss_pred CCe-EECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEeC
Confidence 996 999999999999999999999998754 446888754
No 6
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=132.85 Aligned_cols=86 Identities=24% Similarity=0.352 Sum_probs=70.5
Q ss_pred eeee-cceEEEecccccceeecCCCcccceeEEEEEecC-------CCceEEEEEecC-CceEEECCeecCCCceEEeeC
Q 004011 147 LSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENG-------GPSGALLEITGG-KGEVEVNGNVHPKDSQVVLRG 217 (779)
Q Consensus 147 v~I~-~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~g-------g~~va~LEd~ss-NGtV~VNGkkVgKg~kviL~n 217 (779)
+.|. .+.|+|||...|||+|.++.||..||.|.+-..+ .....||+|++| ||| ||||++|.+++.+.|++
T Consensus 35 ~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT-~vNg~ri~~~~~~~L~~ 113 (130)
T 4h87_A 35 RSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGT-FLNKTRIPPRTYCRVHV 113 (130)
T ss_dssp EECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCE-EETTEECCTTCCEECCT
T ss_pred EEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCce-EECCEECCCCceeECCC
Confidence 4554 3568999999999999999999999999652111 123489999955 996 99999999999999999
Q ss_pred CCEEEEccCCCeeEEEe
Q 004011 218 GDELVFSPSGKHSYIFQ 234 (779)
Q Consensus 218 GDEIvfs~~~~~aYIFq 234 (779)
||+|.|+.+.+ .|||+
T Consensus 114 GD~I~~G~str-~yvl~ 129 (130)
T 4h87_A 114 GHVVRFGGSTR-LFILQ 129 (130)
T ss_dssp TCEEEETTCSE-EEEEE
T ss_pred CCEEEECCceE-EEEEc
Confidence 99999988765 58886
No 7
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.51 E-value=6e-14 Score=130.57 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=85.0
Q ss_pred CCcccceeeeccCCCCCceeee-cceEEEecccccceeecCCC----cccceeEEEEEecCCCceEEEEEe-cCCceEEE
Q 004011 129 GSRIPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEV 202 (779)
Q Consensus 129 ~~~~pWGRLlSq~sq~P~v~I~-~~~fTvGR~~~CDl~L~d~~----iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~V 202 (779)
....+|+ |....+.-..+.|. +..|+|||...||++|.+.. ||..||+|.+.+.+ .++|+|+ |.||| ||
T Consensus 5 ~~~~~w~-l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g---~~~l~Dl~S~NGT-~v 79 (138)
T 2pie_A 5 AGGRSWC-LRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEG---QWTIMDNKSLNGV-WL 79 (138)
T ss_dssp GGCEEEE-EEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTS---CEEEEECSCSSCE-EE
T ss_pred CCCccEE-EEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCCC---cEEEEECCCCCCe-EE
Confidence 4456796 55565656678887 78899999999999999998 99999999974333 3899999 56996 99
Q ss_pred CCeecCCCceEEeeCCCEEEEccC----CCeeEEEeecC
Q 004011 203 NGNVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQLS 237 (779)
Q Consensus 203 NGkkVgKg~kviL~nGDEIvfs~~----~~~aYIFq~l~ 237 (779)
||++|.++..+.|++||+|.|+.+ ....|.|+...
T Consensus 80 Ng~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~~ 118 (138)
T 2pie_A 80 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTE 118 (138)
T ss_dssp TTEECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEEE
T ss_pred CCEEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEecc
Confidence 999999999999999999999985 23467776553
No 8
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.50 E-value=1.2e-13 Score=132.39 Aligned_cols=104 Identities=24% Similarity=0.292 Sum_probs=87.4
Q ss_pred CcccceeeeccCCCCCceeeecc-------------eEEEecccccceeecCC-CcccceeEEEEEecCCCceEEEEEec
Q 004011 130 SRIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITG 195 (779)
Q Consensus 130 ~~~pWGRLlSq~sq~P~v~I~~~-------------~fTvGR~~~CDl~L~d~-~iS~~hCkI~r~e~gg~~va~LEd~s 195 (779)
....|++|.......+...+.-. .|+|||+..||++|.|. .||..||+|.+.+.+ .++|+|+|
T Consensus 29 ~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g---~~~l~DlS 105 (164)
T 1g3g_A 29 GENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG---NLLLNDIS 105 (164)
T ss_dssp CSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECSTT---CEEEEECC
T ss_pred CCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCCC---CEEEEECC
Confidence 45678999998887877766554 89999999999999997 699999999974333 28999998
Q ss_pred CCceEEECCeecCCCceEEeeCCCEEEEccC---CCeeEEEeecC
Q 004011 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSPS---GKHSYIFQQLS 237 (779)
Q Consensus 196 sNGtV~VNGkkVgKg~kviL~nGDEIvfs~~---~~~aYIFq~l~ 237 (779)
.||| ||||++|.++..+.|++||+|.|+.. ....|+|....
T Consensus 106 ~NGT-~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~~ 149 (164)
T 1g3g_A 106 TNGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIND 149 (164)
T ss_dssp SSCE-EETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEECH
T ss_pred CCCe-EECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeCc
Confidence 8996 99999999999999999999999886 34578887543
No 9
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.44 E-value=2e-13 Score=133.61 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=81.3
Q ss_pred CcccceeeeccCCC--CCceeeecce--EEEecccccceeecCCCcccceeEEEEEec-CCC----------ceEEEEEe
Q 004011 130 SRIPWARLISQCSQ--NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GGP----------SGALLEIT 194 (779)
Q Consensus 130 ~~~pWGRLlSq~sq--~P~v~I~~~~--fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~-gg~----------~va~LEd~ 194 (779)
....|..|.+.... ...+.|.... |+|||+..||++|.+..||..||.|.+... .|. ...+|+|+
T Consensus 25 ~~g~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl 104 (182)
T 1qu5_A 25 GNGRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT 104 (182)
T ss_dssp SSSCCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC
T ss_pred CCccEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC
Confidence 33456666665432 3556777666 999999999999999999999999998641 111 45899999
Q ss_pred cCCceEEECCeecCCCceEEeeCCCEEEEccC--CCeeEEEee
Q 004011 195 GGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQQ 235 (779)
Q Consensus 195 ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~--~~~aYIFq~ 235 (779)
|.||| ||||++|.+|..+.|++||+|.|... |...++|..
T Consensus 105 StNGT-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 146 (182)
T 1qu5_A 105 GTNVS-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 146 (182)
T ss_dssp SSSCC-EETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECCE
T ss_pred CcCCe-EECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEEE
Confidence 99996 99999999999999999999999332 344556653
No 10
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.43 E-value=4.1e-13 Score=125.21 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=83.7
Q ss_pred CCCcccceeeeccCCCC---CceeeecceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEec-CCceEEEC
Q 004011 128 VGSRIPWARLISQCSQN---SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVN 203 (779)
Q Consensus 128 ~~~~~pWGRLlSq~sq~---P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~s-sNGtV~VN 203 (779)
.....+||+|.-+.... ..+.|....++|||...||++|.|..||..||+|.+...++. .+|+|++ .||| |||
T Consensus 18 ~~~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~--~~l~Dl~S~NGT-~vN 94 (132)
T 3va4_A 18 GSHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKA--PILQDCGSLNGT-QIV 94 (132)
T ss_dssp --CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSC--CEEEECSCSSCE-EET
T ss_pred cccCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCE--EEEEECCCCCCe-EEC
Confidence 35567999999886655 456888889999999999999999999999999997543443 6799995 5995 999
Q ss_pred Cee--cCCCceEEeeCCCEEEEccCCCeeEEEeec
Q 004011 204 GNV--HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (779)
Q Consensus 204 Gkk--VgKg~kviL~nGDEIvfs~~~~~aYIFq~l 236 (779)
|++ +.++..+.|+.||+|.|+. ..+.|..+
T Consensus 95 g~~i~l~~~~~~~L~~GD~I~lG~---~~l~f~~~ 126 (132)
T 3va4_A 95 KPPRVLPPGVSHRLRDQELILFAD---FPCQYHRL 126 (132)
T ss_dssp TTTEEECTTCCEECCTTCEEEETT---EEEEEEEC
T ss_pred CEEcccCCCCEEECCCCCEEEECC---EEEEEEEC
Confidence 998 6888999999999999954 45566644
No 11
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.43 E-value=5.7e-13 Score=120.27 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=77.2
Q ss_pred CCcccceeeeccCCCC--Cceeeec-ceEEEecc-cccceeecCCCcccceeEEEEEecCCCceEEEEEe-cCCceEEEC
Q 004011 129 GSRIPWARLISQCSQN--SHLSMTG-AVFTVGHN-RQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVN 203 (779)
Q Consensus 129 ~~~~pWGRLlSq~sq~--P~v~I~~-~~fTvGR~-~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~VN 203 (779)
....||.+|.-..... ..+.|.. ..|+|||. ..||++|.|..||..||+|.... + .++|+|+ |.||| |||
T Consensus 7 ~~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~--~--~~~l~Dl~S~nGT-~vn 81 (118)
T 1uht_A 7 GMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS--G--NWVIQDLGSSNGT-LLN 81 (118)
T ss_dssp CCCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS--S--SEEEECCCCSSCC-EES
T ss_pred CCCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC--C--EEEEEECCCCCCe-EEC
Confidence 4456788887765432 3556765 68999999 89999999999999999999742 2 2899999 56996 999
Q ss_pred CeecCCCceEEeeCCCEEEEccCC
Q 004011 204 GNVHPKDSQVVLRGGDELVFSPSG 227 (779)
Q Consensus 204 GkkVgKg~kviL~nGDEIvfs~~~ 227 (779)
|+++.++..+.|++||+|.|+...
T Consensus 82 g~~l~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 82 SNALDPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp SSBCCTTCEEECCTTEEEEETTTE
T ss_pred CEECCCCCeEEcCCCCEEEECCeE
Confidence 999999999999999999997653
No 12
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.40 E-value=8.2e-13 Score=126.09 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=78.5
Q ss_pred ceeeeccCCC--CCceeeecce--EEEecccccceeecCCCcccceeEEEEEec-CCC----------ceEEEEEecCCc
Q 004011 134 WARLISQCSQ--NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GGP----------SGALLEITGGKG 198 (779)
Q Consensus 134 WGRLlSq~sq--~P~v~I~~~~--fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~-gg~----------~va~LEd~ssNG 198 (779)
|=.|.|.... ...+.|.... |+|||+..||++|.+..||..||+|.+... .+. ..++|+|+|.||
T Consensus 5 ~l~L~p~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNG 84 (158)
T 1dmz_A 5 FLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNV 84 (158)
T ss_dssp CEEEEECTTSSCCCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTC
T ss_pred EEEEEeCCCCccceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCC
Confidence 4456665432 3456777666 999999999999999999999999998641 111 458999999999
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEccC--CCeeEEEee
Q 004011 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQQ 235 (779)
Q Consensus 199 tV~VNGkkVgKg~kviL~nGDEIvfs~~--~~~aYIFq~ 235 (779)
| ||||++|.+|..+.|+.||+|.|... |...+.|..
T Consensus 85 T-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 122 (158)
T 1dmz_A 85 S-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 122 (158)
T ss_dssp C-EETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEEE
T ss_pred e-EECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEEEE
Confidence 6 99999999999999999999999332 334455553
No 13
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.38 E-value=5.8e-13 Score=125.05 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCcccceeeeccCCCCCceee-ecceEEEecccccceeecCCC----cccceeEEEEEecCCCceEEEEEe-cCCceEEE
Q 004011 129 GSRIPWARLISQCSQNSHLSM-TGAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEV 202 (779)
Q Consensus 129 ~~~~pWGRLlSq~sq~P~v~I-~~~~fTvGR~~~CDl~L~d~~----iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~V 202 (779)
.....|+.+ ...+....+.+ .+..|+|||...||++|.+.. ||..||+|.+.+.+ .++|+|+ |.||| ||
T Consensus 13 ~~~~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g---~~~l~Dl~S~NGT-~v 87 (145)
T 2csw_A 13 AGGRSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEG---QWTIMDNKSLNGV-WL 87 (145)
T ss_dssp TCSEEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTTS---CEEEEBSSCSSCE-EE
T ss_pred CCCccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCCC---eEEEEECCCCCCe-EE
Confidence 445678855 44444555666 456899999999999999998 99999999974333 3899998 55996 99
Q ss_pred CCeecCCCceEEeeCCCEEEEccC----CCeeEEEeec
Q 004011 203 NGNVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQL 236 (779)
Q Consensus 203 NGkkVgKg~kviL~nGDEIvfs~~----~~~aYIFq~l 236 (779)
||++|.++..+.|++||+|.|+.+ ....|+|+..
T Consensus 88 Ng~~i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~~ 125 (145)
T 2csw_A 88 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 125 (145)
T ss_dssp SSCBCCBTCCEECCSSCCEEESCCCTTCSSCSCCCCEE
T ss_pred CCEECCCCccEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 999999999999999999999885 2345555543
No 14
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.38 E-value=5.8e-13 Score=121.96 Aligned_cols=101 Identities=25% Similarity=0.409 Sum_probs=79.8
Q ss_pred CCCcccceeeeccCC---CCCceeeecceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEec-CCceEEEC
Q 004011 128 VGSRIPWARLISQCS---QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVN 203 (779)
Q Consensus 128 ~~~~~pWGRLlSq~s---q~P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~s-sNGtV~VN 203 (779)
+....+|++|+-+.. .-..+.|....|+|||...||++|.|..||..||+|.... + .++|+|++ .||| |||
T Consensus 6 ~g~~~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~--~--~~~l~Dl~S~nGt-~vN 80 (128)
T 1r21_A 6 PGGMWPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHE--Q--EAILHNFSSTNPT-QVN 80 (128)
T ss_dssp ---CCCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS--S--CEEECCCCSSSCC-EET
T ss_pred CCCCCCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEEC--C--EEEEEECCCCCCE-EEC
Confidence 456678888886642 2334688889999999999999999999999999999842 2 38999995 5996 999
Q ss_pred CeecCCCceEEeeCCCEEEEccCCCeeEEEeecCc
Q 004011 204 GNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSD 238 (779)
Q Consensus 204 GkkVgKg~kviL~nGDEIvfs~~~~~aYIFq~l~~ 238 (779)
|++|.+ .+.|+.||+|.|+ ...|.|.....
T Consensus 81 g~~i~~--~~~L~~Gd~i~iG---~~~~~~~~~~~ 110 (128)
T 1r21_A 81 GSVIDE--PVRLKHGDVITII---DRSFRYENESL 110 (128)
T ss_dssp TEECSS--CEECCTTEEEECS---SCEEEEEEC--
T ss_pred CEECCC--cEEcCCCCEEEEC---CEEEEEEeCCc
Confidence 999984 7999999999996 45778876533
No 15
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.34 E-value=2.6e-12 Score=119.27 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=66.2
Q ss_pred CceeeecceEEEecccccceeecCCCcccceeEEEEEec-CCCceEEEEEe------cCCceEEECCeecCCCceEEeeC
Q 004011 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GGPSGALLEIT------GGKGEVEVNGNVHPKDSQVVLRG 217 (779)
Q Consensus 145 P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~-gg~~va~LEd~------ssNGtV~VNGkkVgKg~kviL~n 217 (779)
..+.|....|+|||...||++|.++.||..||+|.+... .|....+|+|+ |.||| ||||++|.+ +.|+.
T Consensus 23 ~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT-~vNg~~i~~---~~L~~ 98 (131)
T 3hx1_A 23 REVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGL-MINGKKVQE---HIIQT 98 (131)
T ss_dssp EEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCE-EETTEEESE---EECCT
T ss_pred EEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCce-EECCEEeEe---EECCC
Confidence 346788899999999999999999999999999998532 23335899998 77995 999999986 99999
Q ss_pred CCEEEEccCCC
Q 004011 218 GDELVFSPSGK 228 (779)
Q Consensus 218 GDEIvfs~~~~ 228 (779)
||+|.|+....
T Consensus 99 GD~I~iG~~~~ 109 (131)
T 3hx1_A 99 GDEIVMGPQVS 109 (131)
T ss_dssp TCEEECSTTCE
T ss_pred CCEEEECCEEE
Confidence 99999976543
No 16
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.8e-12 Score=123.07 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=74.7
Q ss_pred Cceeee-cceEEEeccc---------------ccceeecCCCcccceeEEEEEecCCCceEEEEEe-cCCceEEECCeec
Q 004011 145 SHLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVH 207 (779)
Q Consensus 145 P~v~I~-~~~fTvGR~~---------------~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~VNGkkV 207 (779)
..+.|. ...|+|||.. .|||+|.++.||..||.|.....++....+|+|+ |.||| ||||++|
T Consensus 48 ~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT-~VNg~ri 126 (158)
T 3els_A 48 KRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVI 126 (158)
T ss_dssp EEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCC-EETTEEC
T ss_pred eEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCcc-EECCEEc
Confidence 355665 4579999984 5999999999999999999876555556899999 66996 9999999
Q ss_pred CCCceEEeeCCCEEEEccCC---CeeEEEee
Q 004011 208 PKDSQVVLRGGDELVFSPSG---KHSYIFQQ 235 (779)
Q Consensus 208 gKg~kviL~nGDEIvfs~~~---~~aYIFq~ 235 (779)
.++..+.|+.||+|.|+.+. ..-|+|..
T Consensus 127 ~~~~~~~L~~GD~I~~G~s~~~~~~elvF~~ 157 (158)
T 3els_A 127 PGARYIELRSGDVLTLSEFEEDNDYELIFMN 157 (158)
T ss_dssp CTTCCEECCTTEEEESSSCGGGCCEEEEEEE
T ss_pred CCCceEEcCCCCEEEECCCCCCCCEEEEEEe
Confidence 99999999999999998765 45666653
No 17
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.33 E-value=5.9e-12 Score=110.65 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=68.2
Q ss_pred CCCCceeeecceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEec-CCceEEECCeecCCCceEEeeCCCE
Q 004011 142 SQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDE 220 (779)
Q Consensus 142 sq~P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~s-sNGtV~VNGkkVgKg~kviL~nGDE 220 (779)
..-..+.|....++|||+..||++|.|+.||..||+|.+. ++. .+|+|++ .||| ||||+++. .+.|+.||+
T Consensus 13 g~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~ 84 (100)
T 3po8_A 13 GSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDV 84 (100)
T ss_dssp SSCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS---EEECCTTCE
T ss_pred CCCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CCE--EEEEECCCCCCE-EECCEECc---eEECCCCCE
Confidence 3345567888889999999999999999999999999974 222 7999995 5996 99999997 689999999
Q ss_pred EEEccCCCeeEEEe
Q 004011 221 LVFSPSGKHSYIFQ 234 (779)
Q Consensus 221 Ivfs~~~~~aYIFq 234 (779)
|.|+. ..|.|+
T Consensus 85 i~iG~---~~~~~~ 95 (100)
T 3po8_A 85 IRLGH---SEIIVR 95 (100)
T ss_dssp EEETT---EEEEEE
T ss_pred EEECC---EEEEEE
Confidence 99965 445554
No 18
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.33 E-value=9.5e-12 Score=112.22 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCceeeecceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEe-cCCceEEECCeecCCCceEEeeCCCEE
Q 004011 143 QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (779)
Q Consensus 143 q~P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~VNGkkVgKg~kviL~nGDEI 221 (779)
.-..+.|....++|||...||++|.|..||..||+|.+. ++ .++|+|+ |.||| ||||+++. .+.|+.||+|
T Consensus 22 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~--~~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i 93 (115)
T 2xt9_B 22 AGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GG--EFQVVDVGSLNGT-YVNREPVD---SAVLANGDEV 93 (115)
T ss_dssp TTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TT--EEEEEECSCSSCE-EETTEECS---EEEECTTCEE
T ss_pred CCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CC--EEEEEECCCCCCe-EECCEEcc---eEECCCCCEE
Confidence 345678888899999999999999999999999999985 22 3899999 56995 99999998 6899999999
Q ss_pred EEccCCCeeEEEeecC
Q 004011 222 VFSPSGKHSYIFQQLS 237 (779)
Q Consensus 222 vfs~~~~~aYIFq~l~ 237 (779)
.|+. ..|.|....
T Consensus 94 ~iG~---~~l~~~~~~ 106 (115)
T 2xt9_B 94 QIGK---FRLVFLTGP 106 (115)
T ss_dssp EETT---EEEEEEC--
T ss_pred EECC---EEEEEEeCC
Confidence 9964 567776543
No 19
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.29 E-value=1.4e-11 Score=116.23 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=69.3
Q ss_pred CceeeecceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEec-CCceEEECCeecCCCceEEeeCCCEEEE
Q 004011 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (779)
Q Consensus 145 P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~s-sNGtV~VNGkkVgKg~kviL~nGDEIvf 223 (779)
..+.|....++|||...|||+|.|..||..||+|.+. ++ .++|+|++ .||| ||||++|. .+.|++||+|.|
T Consensus 59 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~--~~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 130 (143)
T 2kb3_A 59 ARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EG--EFEVVDVGSLNGT-YVNREPRN---AQVMQTGDEIQI 130 (143)
T ss_dssp CEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TT--EEEEEESCCSSCC-EETTEECS---EEECCTTEEEEE
T ss_pred eEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CC--EEEEEECCCcCCe-EECCEEcc---eEECCCCCEEEE
Confidence 4457778899999999999999999999999999984 22 38999995 5996 99999998 689999999999
Q ss_pred ccCCCeeEEEeecC
Q 004011 224 SPSGKHSYIFQQLS 237 (779)
Q Consensus 224 s~~~~~aYIFq~l~ 237 (779)
+. ..|+|....
T Consensus 131 G~---~~l~f~~~~ 141 (143)
T 2kb3_A 131 GK---FRLVFLAGP 141 (143)
T ss_dssp TT---EEEEEEECC
T ss_pred CC---EEEEEEeCC
Confidence 64 567776543
No 20
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.27 E-value=1e-11 Score=115.66 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=66.4
Q ss_pred eEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEec-CCceEEECCeecCC--------CceEEeeCCCEEEE
Q 004011 153 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPK--------DSQVVLRGGDELVF 223 (779)
Q Consensus 153 ~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~s-sNGtV~VNGkkVgK--------g~kviL~nGDEIvf 223 (779)
.|+|||...||++|.|..||..||+|.+...++ ..+|+|++ .||| ||||+++.+ +..+.|+.||+|.|
T Consensus 33 ~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~--~~~l~DlgS~NGT-~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 33 PVKLGRVSPSDLALKDSEVSGKHAQITWNSTKF--KWELVDMGSLNGT-LVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SEEEESSSSCSEECCCTTSSSEEEEEEEETTTT--EEEEEETTCSSCC-EETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred eEEeeCCCCCCEEeCCCCCChHHcEEEEECCCC--EEEEEECCCCCCE-EECCEECcCcccccccCCceEECCCCCEEEE
Confidence 799999999999999999999999999864332 48999995 6996 999999995 88999999999999
Q ss_pred ccCCCeeEEEeec
Q 004011 224 SPSGKHSYIFQQL 236 (779)
Q Consensus 224 s~~~~~aYIFq~l 236 (779)
+. ..++|..+
T Consensus 110 G~---~~~~~~~~ 119 (139)
T 1mzk_A 110 GT---TTKVYVRI 119 (139)
T ss_dssp SS---SCEEEEEE
T ss_pred CC---EEEEEEEc
Confidence 65 34566544
No 21
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.27 E-value=1.3e-12 Score=121.69 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=69.6
Q ss_pred ceeeecc-eEEEecccc-cceeecCCCcccceeEEEEEecCCCceEEEEEe-cCCceEEECCeecCCCceEEeeCCCEEE
Q 004011 146 HLSMTGA-VFTVGHNRQ-CDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (779)
Q Consensus 146 ~v~I~~~-~fTvGR~~~-CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~VNGkkVgKg~kviL~nGDEIv 222 (779)
.+.|... .|+|||... ||++|.|..||..||+|.+...++ .++|+|+ |.||| ||||++|.++..+.|+.||+|.
T Consensus 48 ~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~--~~~l~Dl~S~NGT-~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 48 KLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLK--RVFLIDLNSTHGT-FLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp EECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSC--CEEEECCSCSSCE-ESSSCEECSSSCCEECTTCCBB
T ss_pred EEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCC--cEEEEECCCCCCe-EECCEECCCCccEECCCCCEEE
Confidence 3456654 599999998 999999999999999999753222 3889998 55996 9999999999999999999999
Q ss_pred EccCCCeeEEEe
Q 004011 223 FSPSGKHSYIFQ 234 (779)
Q Consensus 223 fs~~~~~aYIFq 234 (779)
|+.... .|+|.
T Consensus 125 ~G~~~~-~f~~~ 135 (140)
T 2jpe_A 125 FGASTR-AYTLR 135 (140)
T ss_dssp CSSCCC-CBCCB
T ss_pred ECCceE-EEEEe
Confidence 987543 35554
No 22
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.27 E-value=2.4e-11 Score=115.65 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=69.2
Q ss_pred eeecceEEEeccc---ccceeecCCCcccceeEEEEEecCCC-ceEEEEEecCCceEEECCeecCCCceEEeeCCCEEEE
Q 004011 148 SMTGAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGGP-SGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (779)
Q Consensus 148 ~I~~~~fTvGR~~---~CDl~L~d~~iS~~hCkI~r~e~gg~-~va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvf 223 (779)
.|....++|||.. .|||+|.++.||..||.|.+...++. .+++++..+.||| ||||++|.+ .+.|++||+|.|
T Consensus 57 ~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt-~VNG~~i~~--~~~L~~GD~I~~ 133 (154)
T 4ejq_A 57 YIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKKVTE--PSILRSGNRIIM 133 (154)
T ss_dssp ECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCE-EETTEECCS--CEECCTTCEEEE
T ss_pred EeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCce-EECCEEcCC--ceECCCCCEEEE
Confidence 5667789999976 79999999999999999998755543 4566777778995 999999954 789999999999
Q ss_pred ccCCCeeEEEeec
Q 004011 224 SPSGKHSYIFQQL 236 (779)
Q Consensus 224 s~~~~~aYIFq~l 236 (779)
+. .|.|.|.+.
T Consensus 134 G~--~~~Frf~~P 144 (154)
T 4ejq_A 134 GK--SHVFRFNHP 144 (154)
T ss_dssp TT--TEEEEEECH
T ss_pred CC--cEEEEEcCh
Confidence 64 578888753
No 23
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.26 E-value=2.2e-11 Score=108.27 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=66.5
Q ss_pred ceeeecc-eEEEeccc-ccceeecCCCcccceeEEEEEecCCCceEEEEEe-cCCceEEECCeecCCCceEEeeCCCEEE
Q 004011 146 HLSMTGA-VFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (779)
Q Consensus 146 ~v~I~~~-~fTvGR~~-~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~VNGkkVgKg~kviL~nGDEIv 222 (779)
.+.|... .|+|||.. .||++|.|+.||..||+|.+...+. .+|+|+ |.||| ||||+++.+ .+.|+.||+|.
T Consensus 18 ~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~~---~~l~Dl~S~nGt-~vng~~i~~--~~~L~~Gd~i~ 91 (106)
T 3gqs_A 18 EFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNS---VLIEDLGSKNGV-IVEGRKIEH--QSTLSANQVVA 91 (106)
T ss_dssp EEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTSC---EEEEECSCSSCC-EETTEECSS--EEECCTTCCEE
T ss_pred EEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCCc---EEEEECcCCCCe-EECCEECCC--CeECCCCCEEE
Confidence 3466654 69999999 7999999999999999999742232 889999 55996 999999997 68999999999
Q ss_pred EccCCCeeEEEee
Q 004011 223 FSPSGKHSYIFQQ 235 (779)
Q Consensus 223 fs~~~~~aYIFq~ 235 (779)
|+. ..|.|..
T Consensus 92 ~G~---~~~~~~~ 101 (106)
T 3gqs_A 92 LGT---TLFLLVD 101 (106)
T ss_dssp ETT---EEEEEEE
T ss_pred ECC---EEEEEEc
Confidence 964 4566654
No 24
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.23 E-value=2.5e-11 Score=121.57 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=70.2
Q ss_pred Cceeee-cceEEEeccc---------------ccceeecCCCcccceeEEEEEecCCCceEEEEEe-cCCceEEECCeec
Q 004011 145 SHLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVH 207 (779)
Q Consensus 145 P~v~I~-~~~fTvGR~~---------------~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~VNGkkV 207 (779)
..+.|. .+.|+|||.. .|||+|.++.||..||.|.....++....||+|+ |+||| ||||++|
T Consensus 95 ~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGT-fVNG~rI 173 (205)
T 3elv_A 95 KRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVI 173 (205)
T ss_dssp EEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCC-EETTEEC
T ss_pred eEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCC-eECCEEC
Confidence 356774 5889999984 4999999999999999998765555556899999 55996 9999999
Q ss_pred CCCceEEeeCCCEEEEccCC
Q 004011 208 PKDSQVVLRGGDELVFSPSG 227 (779)
Q Consensus 208 gKg~kviL~nGDEIvfs~~~ 227 (779)
.++..+.|..||+|.|+.+.
T Consensus 174 ~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 174 PGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp CBTSCEECCTTCEEESSSSG
T ss_pred CCCceeECCCCCEEEECCCC
Confidence 99999999999999998765
No 25
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.22 E-value=5.8e-11 Score=114.54 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=69.4
Q ss_pred CCceeeecceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEec-CCceEEECCeecCCCceEEeeCCCEEE
Q 004011 144 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELV 222 (779)
Q Consensus 144 ~P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~s-sNGtV~VNGkkVgKg~kviL~nGDEIv 222 (779)
-..+.|....++|||...|||+|.|..||..||+|.+. ++ .++|+|++ .||| ||||++|. .+.|+.||+|.
T Consensus 67 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~--~~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~ 138 (162)
T 2kfu_A 67 GSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NN--EFNVVDVGSLNGT-YVNREPVD---SAVLANGDEVQ 138 (162)
T ss_dssp SCEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TT--EEEEECCCCSSCE-EETTBCCS---EEECCSSCEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CC--EEEEEECCCCCCe-EECCEEcc---eEECCCCCEEE
Confidence 34556777899999999999999999999999999984 22 38999995 5995 99999997 58999999999
Q ss_pred EccCCCeeEEEeecC
Q 004011 223 FSPSGKHSYIFQQLS 237 (779)
Q Consensus 223 fs~~~~~aYIFq~l~ 237 (779)
|+. ..|+|..-.
T Consensus 139 iG~---~~l~f~~~~ 150 (162)
T 2kfu_A 139 IGK---FRLVFLTGP 150 (162)
T ss_dssp ETT---EEEEEECSC
T ss_pred ECC---EEEEEEeCC
Confidence 964 567776543
No 26
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.20 E-value=6.1e-11 Score=125.69 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=80.4
Q ss_pred CcccceeeeccCCCCCceeeecceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEec-CCceEEECCeecC
Q 004011 130 SRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHP 208 (779)
Q Consensus 130 ~~~pWGRLlSq~sq~P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~s-sNGtV~VNGkkVg 208 (779)
...||..|+.... -..+.|....++|||+..||++|.|..||..||+|... ++. ++|+|++ .||| ||||++|.
T Consensus 285 ~~~~~~~l~~~~~-g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~ 358 (388)
T 2ff4_A 285 GQQAVAYLHDIAS-GRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GTN--YVINDLRSSNGV-HVQHERIR 358 (388)
T ss_dssp SSBCCCEEEETTT-CCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS
T ss_pred CCCCeEEEEECCC-CcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CCE--EEEEECCCCCCe-EECCEECC
Confidence 4578999987544 36788999999999999999999999999999999973 222 8999985 5996 99999995
Q ss_pred CCceEEeeCCCEEEEccCCCeeEEEeec
Q 004011 209 KDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (779)
Q Consensus 209 Kg~kviL~nGDEIvfs~~~~~aYIFq~l 236 (779)
..+.|++||+|.|+. ..|+|...
T Consensus 359 --~~~~L~~gd~i~~G~---~~~~~~~~ 381 (388)
T 2ff4_A 359 --SAVTLNDGDHIRICD---HEFTFQIS 381 (388)
T ss_dssp --SEEEECTTCEEEETT---EEEEEECS
T ss_pred --CceECCCCCEEEECC---EEEEEEeC
Confidence 589999999999964 56777643
No 27
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.20 E-value=6.1e-11 Score=114.31 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=67.1
Q ss_pred CCCceeeecceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEe-cCCceEEECCeecCCCceEEeeCCCEE
Q 004011 143 QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (779)
Q Consensus 143 q~P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~-ssNGtV~VNGkkVgKg~kviL~nGDEI 221 (779)
.-..+.|....++|||...|||+|.|..||..||+|.+.. + .++|+|+ |.||| ||||++|. .+.|+.||+|
T Consensus 76 ~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~--~--~~~l~DlgStNGT-~VNG~~i~---~~~L~~GD~I 147 (157)
T 3oun_A 76 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG--Q--VALLADLNSTNGT-TVNNAPVQ---EWQLADGDVI 147 (157)
T ss_dssp TCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS--S--CEEEEECSCSSCC-EETTEECS---EEECCTTCEE
T ss_pred CCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC--C--EEEEEECCCCCCe-EECCEECc---eEECCCCCEE
Confidence 3455678888999999999999999999999999999732 2 2899999 55996 99999996 6899999999
Q ss_pred EEccCCCeeEEE
Q 004011 222 VFSPSGKHSYIF 233 (779)
Q Consensus 222 vfs~~~~~aYIF 233 (779)
.|.. ..++|
T Consensus 148 ~lG~---~~l~f 156 (157)
T 3oun_A 148 RLGH---SEIIV 156 (157)
T ss_dssp EETT---EEEEE
T ss_pred EECC---EEEEE
Confidence 9964 44555
No 28
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.19 E-value=6.6e-11 Score=107.63 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=67.9
Q ss_pred eeeecceEEEec--ccccceeecCCCcccceeEEEEEecCCCceEEEEEec-CCceEEECCeecCCCceEEeeCCCEEEE
Q 004011 147 LSMTGAVFTVGH--NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (779)
Q Consensus 147 v~I~~~~fTvGR--~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~s-sNGtV~VNGkkVgKg~kviL~nGDEIvf 223 (779)
+.|....++||| +..||++|.+..||..||.|... ++ .++|+|++ .||| ||||++|. ..+.|+.||+|.|
T Consensus 31 ~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~--~~~l~dl~S~ngt-~vNg~~i~--~~~~L~~GD~I~i 103 (120)
T 1wln_A 31 YRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DG--VVTVTPRSMDAET-YVDGQRIS--ETTMLQSGMRLQF 103 (120)
T ss_dssp EECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SS--CEEEEESCSSSCE-EETSCBCS--SCEEECTTCEEEE
T ss_pred EEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CC--EEEEEECCCCCCE-EECCEEcC--CCEECCCCCEEEE
Confidence 577778899996 57999999999999999999973 22 28899996 5885 99999998 4689999999999
Q ss_pred ccCCCeeEEEeec
Q 004011 224 SPSGKHSYIFQQL 236 (779)
Q Consensus 224 s~~~~~aYIFq~l 236 (779)
+. .+.|.|...
T Consensus 104 G~--~~~~~f~~p 114 (120)
T 1wln_A 104 GT--SHVFKFVDP 114 (120)
T ss_dssp TT--TEEEEEECS
T ss_pred CC--ceEEEEECC
Confidence 75 367888754
No 29
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.16 E-value=1.8e-10 Score=106.89 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=65.1
Q ss_pred cceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCee
Q 004011 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 230 (779)
Q Consensus 151 ~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~a 230 (779)
....+|||...|||+|.+..||..||.|...+.+ .++|++.++||| ||||+.|.+ .+.|+.||.|.|+. .+.
T Consensus 47 ~~~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~g---~~~l~dl~~ngt-~VNG~~V~~--~~~L~~GD~I~lG~--~~~ 118 (124)
T 3fm8_A 47 KEHTLIGSANSQDIQLCGMGILPEHCIIDITSEG---QVMLTPQKNTRT-FVNGSSVSS--PIQLHHGDRILWGN--NHF 118 (124)
T ss_dssp CSEEEEESSTTCSEECCSTTCCSSCEEEEECTTS---CEEEEECTTCCE-EETTEECCS--CEEECTTCEEEETT--TEE
T ss_pred CCCeEECCCCCCCEEECCCCeecceEEEEECCCC---eEEEEECCCCCE-EECCEEcCC--cEECCCCCEEEECC--CeE
Confidence 3468999999999999999999999999863323 378999999995 999999974 79999999999965 567
Q ss_pred EEEee
Q 004011 231 YIFQQ 235 (779)
Q Consensus 231 YIFq~ 235 (779)
|.|.+
T Consensus 119 FrFn~ 123 (124)
T 3fm8_A 119 FRLNL 123 (124)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77753
No 30
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.97 E-value=2.6e-09 Score=98.08 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=80.0
Q ss_pred ceeeeccCCCCCceeee--cceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEecCCceEEECCeecCCCc
Q 004011 134 WARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDS 211 (779)
Q Consensus 134 WGRLlSq~sq~P~v~I~--~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVgKg~ 211 (779)
-|.|.|++...|.|.|. .-..++||+. +..++|..+|..||+|+- +..+. .+.+-++|.|++ +|||++++||.
T Consensus 9 ~c~L~~~~~~~~~I~Lp~~~g~~viGR~p--~t~I~DkrcSR~hv~L~a-d~~~~-~v~vk~lG~Np~-~vng~~l~k~~ 83 (110)
T 2brf_A 9 RLWLESPPGEAPPIFLPSDGQALVLGRGP--LTQVTDRKCSRTQVELVA-DPETR-TVAVKQLGVNPS-TTGTQELKPGL 83 (110)
T ss_dssp EEEEECSTTSSCCEECCSTTCCEEECSBT--TTTBCCTTSCSSCEEEEE-ETTTT-EEEEEECSSSCC-EEC-CBCCTTC
T ss_pred EEEEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccceeeeEEEEE-ecCCC-EEEEEEcccCCc-EECCEEcCCCC
Confidence 48899999999999995 6889999999 455899999999999984 33332 377889999996 99999999999
Q ss_pred eEEeeCCCEEEEccCCCeeEEEee
Q 004011 212 QVVLRGGDELVFSPSGKHSYIFQQ 235 (779)
Q Consensus 212 kviL~nGDEIvfs~~~~~aYIFq~ 235 (779)
.+.|++||.|.+ .++.|.|.++-
T Consensus 84 ~~~L~~GD~leL-l~g~y~~~v~f 106 (110)
T 2brf_A 84 EGSLGVGDTLYL-VNGLHPLTLRW 106 (110)
T ss_dssp EEEEETTCEEEE-ETTEEEEEEEE
T ss_pred EEEecCCCEEEE-ccCCeEEEEEe
Confidence 999999999998 45777776653
No 31
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.92 E-value=1.9e-09 Score=97.86 Aligned_cols=70 Identities=11% Similarity=0.235 Sum_probs=58.4
Q ss_pred CCceeeec-ceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEecCCceEEECCeecCCCceEEeeCCCEE
Q 004011 144 NSHLSMTG-AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (779)
Q Consensus 144 ~P~v~I~~-~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEI 221 (779)
-|.+.|.. ..|++||.+.|+|+|.|++||..|+.|.+.++| .|+ +.|.||+|||||.++ ..+.|..||-|
T Consensus 12 ~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~-l~S~nGtVFVNGqrv---~~~~I~~gDtI 82 (102)
T 3uv0_A 12 LPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVR-LAALVGKIFVNDQEE---TVVDIGMENAV 82 (102)
T ss_dssp SCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEE-EEESSSCEEETTEEE---SEEEECGGGCB
T ss_pred cccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEE-EEeccCcEEECCEEe---eeEEccCCccc
Confidence 45555544 459999999999999999999999999998766 344 249999999999999 58999999983
No 32
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.90 E-value=8e-09 Score=93.59 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=78.7
Q ss_pred ceeeeccCCCCCceeeecce-EEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEecCCceEEECCeecCCCce
Q 004011 134 WARLISQCSQNSHLSMTGAV-FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ 212 (779)
Q Consensus 134 WGRLlSq~sq~P~v~I~~~~-fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVgKg~k 212 (779)
=|-|.|++...|.|.|.... .+|||+..|.+ +|..+|..||.|+-...++ .+.+-++|.|++ +|||+.++||..
T Consensus 4 ~c~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~~~g--~v~vk~lg~Np~-~vng~~l~k~~~ 78 (102)
T 3kt9_A 4 VCWLVRQDSRHQRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAECNKG--YVKVKQVGVNPT-SIDSVVIGKDQE 78 (102)
T ss_dssp EEEEEETTSTTCEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEETTTT--EEEEEECSSSCC-EETTEECCBTCE
T ss_pred eEEEEecCCCCCcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEecCCC--EEEEEECcCCCC-eECCEEcCCCCe
Confidence 37899999999999885555 78999998855 7999999999998543333 377899999996 999999999999
Q ss_pred EEeeCCCEEEEccCCCeeEEEe
Q 004011 213 VVLRGGDELVFSPSGKHSYIFQ 234 (779)
Q Consensus 213 viL~nGDEIvfs~~~~~aYIFq 234 (779)
+.|++||.|.+. +++|.|.+.
T Consensus 79 ~~L~~GD~l~Ll-~~~~~~~v~ 99 (102)
T 3kt9_A 79 VKLQPGQVLHMV-NELYPYIVE 99 (102)
T ss_dssp EEECTTCCEEEE-TTEEEEEEE
T ss_pred EEeCCCCEEEEc-cCCceEEEE
Confidence 999999999884 456566554
No 33
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.86 E-value=1.1e-08 Score=97.66 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=83.2
Q ss_pred ccceeeeccCCCCCceeee--cceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEecCCceEEECCeecCC
Q 004011 132 IPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (779)
Q Consensus 132 ~pWGRLlSq~sq~P~v~I~--~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVgK 209 (779)
.+-|.|.|++...|.|.|. .-.++|||+. ...++|...|..||+|+- +-.+. .+.+-++|.|++ +|||++++|
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgP--et~ItDkRcSR~qv~L~a-d~~~g-~V~Vk~lG~NP~-~vng~~L~k 81 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELIA-DPESR-TVAVKQLGVNPS-TVGVHELKP 81 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBT--TTTBCCSSSCSSCEEEEE-ETTTT-EEEEEECSSSCC-EETTEECCT
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCC--ccccccccccceeEEEEE-ecCCC-eEEEEEcccCCc-EECCEEecC
Confidence 4569999999999999995 6889999999 556899999999999984 33332 366889999996 999999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEEee
Q 004011 210 DSQVVLRGGDELVFSPSGKHSYIFQQ 235 (779)
Q Consensus 210 g~kviL~nGDEIvfs~~~~~aYIFq~ 235 (779)
|..+.|++||.|.| .++.|.|.|..
T Consensus 82 ~~~~~L~~GD~LeL-l~g~y~f~V~f 106 (143)
T 1yj5_C 82 GLSGSLSLGDVLYL-VNGLYPLTLRW 106 (143)
T ss_dssp TCEEEECTTCEEES-SSSCSEEEEEE
T ss_pred CCEEEecCCCEEEE-ecCCceEEEEe
Confidence 99999999999998 56777777765
No 34
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.80 E-value=6.9e-09 Score=96.48 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=83.5
Q ss_pred cccceeeeccCCCCCceeee--cceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEecCCceEEECCeecC
Q 004011 131 RIPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHP 208 (779)
Q Consensus 131 ~~pWGRLlSq~sq~P~v~I~--~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVg 208 (779)
...-|.|.|++...|.|.|. .-.++|||+. +..++|...|..||+|+- +..+. .+.+-++|.|++ +|||++++
T Consensus 13 ~~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp--~t~I~DkrcSR~qv~L~a-d~~~~-~v~vk~lG~NP~-~vng~~l~ 87 (119)
T 1ujx_A 13 SRGRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELIA-DPESR-TVAVKQLGVNPS-TVGVQELK 87 (119)
T ss_dssp CCCCEEEECCSSSCCCCCCCTTSCCEEESBBT--TTTBCCTTSCTTSEEEEE-ETTTT-EEEEEECSSSCC-BSSSSBCC
T ss_pred ccceEEEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccccceeEEEEE-ecCCC-EEEEEEcccCCc-EECCEEec
Confidence 35669999999999999995 6889999999 556799999999999984 33332 366789999996 99999999
Q ss_pred CCceEEeeCCCEEEEccCCCeeEEEeec
Q 004011 209 KDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (779)
Q Consensus 209 Kg~kviL~nGDEIvfs~~~~~aYIFq~l 236 (779)
|+..+.|++||.|.+ .++.|.|.++..
T Consensus 88 k~~~~~L~~GD~l~L-l~g~y~~~v~f~ 114 (119)
T 1ujx_A 88 PGLSGSLSLGDVLYL-VNGLYPLTLRWS 114 (119)
T ss_dssp TTCEEEEETTCCCBC-BTTBSCCEEEEC
T ss_pred CCCEEEecCCCEEEE-ecCCeEEEEEec
Confidence 999999999999988 467777776643
No 35
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.66 E-value=1.3e-07 Score=92.86 Aligned_cols=84 Identities=24% Similarity=0.425 Sum_probs=69.3
Q ss_pred eeecceEEEeccc---ccceeecCCCcccceeEEEEEecCC-CceEEEEEecCCceEEECCeecCCCceEEeeCCCEEEE
Q 004011 148 SMTGAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGG-PSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (779)
Q Consensus 148 ~I~~~~fTvGR~~---~CDl~L~d~~iS~~hCkI~r~e~gg-~~va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvf 223 (779)
.|....-+|||.. .|||+|....|+..||.|.....++ ..+++|+....+. |||||+.|.. .+.|++||.|.|
T Consensus 87 ~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~-t~VNG~~I~~--~~~L~~GDrI~l 163 (184)
T 4egx_A 87 YIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGAD-TYVNGKKVTE--PSILRSGNRIIM 163 (184)
T ss_dssp ECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCC-EEETTEECCS--CEECCTTCEEEE
T ss_pred EECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCe-EEEcCEEccc--cEEcCCCCEEEE
Confidence 4555678999964 6999999999999999999765554 4678899987766 6999999964 789999999999
Q ss_pred ccCCCeeEEEeec
Q 004011 224 SPSGKHSYIFQQL 236 (779)
Q Consensus 224 s~~~~~aYIFq~l 236 (779)
+. .|.|.|.+.
T Consensus 164 G~--~h~Frfn~P 174 (184)
T 4egx_A 164 GK--SHVFRFNHP 174 (184)
T ss_dssp TT--TEEEEEECH
T ss_pred CC--CCEEEECCh
Confidence 74 688999753
No 36
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=98.31 E-value=1.4e-06 Score=92.59 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=60.2
Q ss_pred eeeecceEEEeccccc---ceeecCCCcccceeEEEEEe-------cCCCceEEEEEecC-CceEEECCeecCCCceEEe
Q 004011 147 LSMTGAVFTVGHNRQC---DLYLKDPSISKNLCRLRRIE-------NGGPSGALLEITGG-KGEVEVNGNVHPKDSQVVL 215 (779)
Q Consensus 147 v~I~~~~fTvGR~~~C---Dl~L~d~~iS~~hCkI~r~e-------~gg~~va~LEd~ss-NGtV~VNGkkVgKg~kviL 215 (779)
+.|....|+|||...+ ++.++|+.||..|+.|.-.. ..+...++|+|+++ ||| ||||++|. +.+..|
T Consensus 16 ~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGT-fVNGerI~-~~~~~L 93 (325)
T 3huf_A 16 RILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGT-KVNEKVVG-QNGDSY 93 (325)
T ss_dssp EEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCE-EETTEECC-TTCEEE
T ss_pred EEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCE-EECCEECC-Cceeee
Confidence 4455666999997653 35899999999999997531 11234689999855 896 99999996 555666
Q ss_pred e-CCCEEEEccCCC
Q 004011 216 R-GGDELVFSPSGK 228 (779)
Q Consensus 216 ~-nGDEIvfs~~~~ 228 (779)
. .||+|.|+....
T Consensus 94 ~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 94 KEKDLKIQLGKCPF 107 (325)
T ss_dssp CSSEEEEEETTCSS
T ss_pred cCCCCEEEecCCcc
Confidence 5 699999987654
No 37
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.97 E-value=1.1e-05 Score=81.70 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=51.1
Q ss_pred eeecceEEEecccccceeecCCCcccceeEEEEEecC--CCceEEEEEec-CCceEEECCeecCCCceEEee-CCCEEEE
Q 004011 148 SMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENG--GPSGALLEITG-GKGEVEVNGNVHPKDSQVVLR-GGDELVF 223 (779)
Q Consensus 148 ~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~g--g~~va~LEd~s-sNGtV~VNGkkVgKg~kviL~-nGDEIvf 223 (779)
.+.+..+||||...||++|.+. . +..|.+.-.+ +. .+|||++ +||+|||||+++... +.|+ .||+|.+
T Consensus 88 ~~~~~~itIG~~~~~dI~l~~~-~---~~~~~~~~~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~i 159 (238)
T 1wv3_A 88 PSIQDTMTIGPNAYDDMVIQSL-M---NAIIIKDFQSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYV 159 (238)
T ss_dssp CSSCSEEEEESSTTSSEECTTC-S---SCEEEECGGGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEE
T ss_pred ecCCceEEEeCCCCCeEEeCCC-e---eEEEEecccCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEE
Confidence 3444599999999999999888 3 3344442011 22 5699998 699999999999553 4799 9999999
No 38
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.4e-05 Score=85.70 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=64.2
Q ss_pred CCccccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEE
Q 004011 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (779)
Q Consensus 446 g~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLi 524 (779)
-+.-+|||++.-= -++.|..|..+.-..|+|+++. +++ -+..+.|||.||+| .-..+||||||++++++++.
T Consensus 173 ~~~p~~t~~digG--l~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPG--TGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 173 DEKPTETYSDVGG--LDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPG--TGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp ESSCSCCGGGSCS--CHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCChHhcCc--HHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCC--CCHHHHHHHHHHHhCCCEEE
Confidence 3567889998754 6899999999998899998764 333 33468999999999 47899999999999999999
Q ss_pred EeccCCC
Q 004011 525 VDSLLLP 531 (779)
Q Consensus 525 lDs~~l~ 531 (779)
++.+.|.
T Consensus 246 v~~s~l~ 252 (434)
T 4b4t_M 246 LAAPQLV 252 (434)
T ss_dssp EEGGGGC
T ss_pred Eehhhhh
Confidence 9875443
No 39
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=97.92 E-value=2.1e-05 Score=73.66 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCceeeecceEEEeccc-ccceeecCCCcccceeEEEEEecCCCceEEEEEecCCceEEECCeecCCCceEEeeCCCEEE
Q 004011 144 NSHLSMTGAVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (779)
Q Consensus 144 ~P~v~I~~~~fTvGR~~-~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIv 222 (779)
--.+++.+..++||... .|||+|.|..||..||.|...+++ ++|. =+.||+ ||||+.+.-+. .|..|+-|.
T Consensus 16 G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L~-~s~ngt-~vdG~~v~~~~--~L~~g~~l~ 87 (123)
T 4a0e_A 16 GVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRLT-DSAEPL-LQEGLPVPLGT--LLRAGSCLE 87 (123)
T ss_dssp TCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEEE-EESSCC-EETTEECCTTC--BCCTTSCEE
T ss_pred CcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEEE-eccCCE-EECCEEccccc--ccCCCCEEE
Confidence 34568889999999999 999999999999999999976544 6665 455775 99999988776 899999998
Q ss_pred EccCCCeeEEEeec
Q 004011 223 FSPSGKHSYIFQQL 236 (779)
Q Consensus 223 fs~~~~~aYIFq~l 236 (779)
++. -.+.|-+.
T Consensus 88 lG~---~~l~~~~~ 98 (123)
T 4a0e_A 88 VGF---LLWTFVAV 98 (123)
T ss_dssp ETT---EEEEEEET
T ss_pred Ecc---EEEEEEcC
Confidence 844 34455443
No 40
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=5e-05 Score=83.27 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=63.5
Q ss_pred ccccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 448 ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.-+|||++.-= -|+.|..|..+.-..|+|+++. +|+ -+..+.|||.||+| .-..+||||||++++++++.++
T Consensus 175 ~p~v~~~digG--l~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPG--tGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDGIGG--LTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPG--TGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSSCSGGGCS--CHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCChhHhCC--hHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 45788888754 5889999999988889998764 443 24568999999999 5789999999999999999999
Q ss_pred ccCCCC
Q 004011 527 SLLLPG 532 (779)
Q Consensus 527 s~~l~G 532 (779)
.+.|.+
T Consensus 248 ~s~l~s 253 (437)
T 4b4t_L 248 ASGIVD 253 (437)
T ss_dssp GGGTCC
T ss_pred hhhhcc
Confidence 876654
No 41
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=6.9e-05 Score=82.53 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=64.4
Q ss_pred CccccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEE
Q 004011 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 447 ~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLil 525 (779)
+.-+|||++.-= -|+.|..|..+.-..|+|+++. +++ -+..+.|||.||+| .-..+||||||+++++.++.+
T Consensus 175 ~~p~v~~~DIgG--ld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPG--TGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 175 KSPTESYSDIGG--LESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPG--TGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp SSCCCCGGGTCS--CHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTT--TTHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCcceecCc--HHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCC--chHHHHHHHHHHHhCCCEEEE
Confidence 455788998765 4889999999998899998765 333 23458899999999 578999999999999999999
Q ss_pred eccCCCC
Q 004011 526 DSLLLPG 532 (779)
Q Consensus 526 Ds~~l~G 532 (779)
+.+.|..
T Consensus 248 ~~s~l~s 254 (437)
T 4b4t_I 248 VGSELIQ 254 (437)
T ss_dssp ESGGGCC
T ss_pred EHHHhhh
Confidence 8766644
No 42
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00011 Score=80.28 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=63.7
Q ss_pred CccccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEE
Q 004011 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 447 ~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLil 525 (779)
+.-+|||++.-= -+..|.-|..+....|+|+++. +++ + +..+.|||.||+| .-..+||||+|++++++++.+
T Consensus 165 ~~p~v~~~digG--l~~~k~~l~e~v~~pl~~p~~~~~~g--~-~~prGiLL~GPPG--tGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 165 EKPDVTYADVGG--LDMQKQEIREAVELPLVQADLYEQIG--I-DPPRGVLLYGPPG--TGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SSCSCCGGGSCS--CHHHHHHHHHHHHHHHHCHHHHHHHC--C-CCCCEEEEESCTT--TTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHhcc--HHHHHHHHHHHHHHHHhCHHHHHhCC--C-CCCceEEEECCCC--CCHHHHHHHHHHHhCCCeEEE
Confidence 445788988654 5889999999999899998765 333 2 3457899999999 589999999999999999999
Q ss_pred eccCCCC
Q 004011 526 DSLLLPG 532 (779)
Q Consensus 526 Ds~~l~G 532 (779)
+.+.+.+
T Consensus 238 ~~~~l~~ 244 (428)
T 4b4t_K 238 NGSEFVH 244 (428)
T ss_dssp EGGGTCC
T ss_pred ecchhhc
Confidence 8765543
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=6.4e-05 Score=81.96 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=62.9
Q ss_pred cccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 449 i~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
-+|||++.-= -|+.|..|..+.-..|+|+++. +++ + +..+.|||.||+| .-..+||||||++.+++++.++.
T Consensus 143 p~v~~~dIgG--l~~~k~~l~e~v~~Pl~~pe~f~~~g--i-~~prGvLL~GPPG--TGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGG--LTKQIKEIKEVIELPVKHPELFESLG--I-AQPKGVILYGPPG--TGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCS--CHHHHHHHHHHTHHHHHCHHHHHHHT--C-CCCCCEEEESCSS--SSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCC--HHHHHHHHHHHHHHHHhCHHHHHhCC--C-CCCCceEEeCCCC--CCHHHHHHHHHHhhCCCceEEEh
Confidence 4688988765 4899999999998889998764 333 3 3357899999999 47999999999999999999998
Q ss_pred cCCCC
Q 004011 528 LLLPG 532 (779)
Q Consensus 528 ~~l~G 532 (779)
+.|..
T Consensus 216 s~l~s 220 (405)
T 4b4t_J 216 AELVQ 220 (405)
T ss_dssp GGGSC
T ss_pred HHhhc
Confidence 66643
No 44
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00015 Score=80.33 Aligned_cols=78 Identities=19% Similarity=0.103 Sum_probs=63.4
Q ss_pred ccccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 448 ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.-+|||++.== -|+.|..|..+....|+++++. +++ -...+.|||.||+| .-..+||||||+++++.++.++
T Consensus 203 ~P~vt~~DIgG--l~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPG--TGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 203 KPDVTYSDVGG--CKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPG--TGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SCSCCCSSCTT--CHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCHHHhcc--HHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCC--CcHHHHHHHHHhccCCCeEEEE
Confidence 34688888654 5889999999998899998764 333 24568999999999 4789999999999999999999
Q ss_pred ccCCCC
Q 004011 527 SLLLPG 532 (779)
Q Consensus 527 s~~l~G 532 (779)
.+.|.+
T Consensus 276 ~s~L~s 281 (467)
T 4b4t_H 276 GSELVQ 281 (467)
T ss_dssp GGGGCC
T ss_pred hHHhhc
Confidence 876654
No 45
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.52 E-value=0.00024 Score=83.27 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=58.3
Q ss_pred cccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 449 i~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
-+|+|++-.- -++.|..|..+.-.-+++.+.. ++. -...+.|||.||+| .-+.+||||||+++++.++.++.
T Consensus 472 p~v~w~digg--l~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPG--tGKT~lAkaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 472 PQVTWEDIGG--LEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPG--CGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCSTTCCS--CHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTT--SSHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCCHHHhCC--HHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCC--CCchHHHHHHHHHhCCceEEecc
Confidence 4567776543 5889999999988888887653 333 34568899999999 57899999999999999998876
Q ss_pred cC
Q 004011 528 LL 529 (779)
Q Consensus 528 ~~ 529 (779)
..
T Consensus 545 ~~ 546 (806)
T 3cf2_A 545 PE 546 (806)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.13 E-value=0.0044 Score=64.84 Aligned_cols=91 Identities=25% Similarity=0.249 Sum_probs=62.5
Q ss_pred HHHHHHhcccCCCccccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 004011 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (779)
Q Consensus 435 fk~~~~~~Vvdg~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKAL 514 (779)
+++.+...| ..+.-.++|+++-- .+..|..|..+...+|++.++.+. .....+.|||.||+| .-..+|||||
T Consensus 33 ~~~~~~~~~-~~~~~~~~~~di~G--~~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppG--tGKT~la~al 104 (355)
T 2qp9_X 33 LRGALSSAI-LSEKPNVKWEDVAG--LEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPG--TGKSYLAKAV 104 (355)
T ss_dssp ---------------CCCGGGSCC--GGGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTT--SCHHHHHHHH
T ss_pred HHHHHhhhh-cccCCCCCHHHhCC--HHHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCC--CcHHHHHHHH
Confidence 344444333 34566899999744 678888888888778888766432 334567899999999 5799999999
Q ss_pred HhhccCeEEEEeccCCCCC
Q 004011 515 AKHFSARLLIVDSLLLPGG 533 (779)
Q Consensus 515 A~~F~AkLLilDs~~l~G~ 533 (779)
|++++.+++.++...|.+.
T Consensus 105 a~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 105 ATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp HHHHTCEEEEEEHHHHHSC
T ss_pred HHHhCCCEEEeeHHHHhhh
Confidence 9999999999998877543
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.04 E-value=0.011 Score=60.99 Aligned_cols=80 Identities=24% Similarity=0.231 Sum_probs=64.4
Q ss_pred CccccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc-cCeEEEE
Q 004011 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-SARLLIV 525 (779)
Q Consensus 447 ~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F-~AkLLil 525 (779)
+.-+|+|+++-- -+..|..|..+.-..|++.++.+ ......+.|||.||+| .-..+||||||+++ ++.++.+
T Consensus 5 ~~~~~~~~di~G--~~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~iLL~GppG--tGKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAG--LEGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPG--TGKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCS--CHHHHHHHHHHHHHHHHCGGGSC---TTCCCCSEEEEESSSS--SCHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcC--HHHHHHHHHHHHHHHHhCHHHHh---CCCCCCceEEEECCCC--ccHHHHHHHHHHHcCCCcEEEE
Confidence 345788998654 68899999998887888877643 2234457899999999 57999999999999 9999999
Q ss_pred eccCCCCC
Q 004011 526 DSLLLPGG 533 (779)
Q Consensus 526 Ds~~l~G~ 533 (779)
+...+.+.
T Consensus 78 ~~~~l~~~ 85 (322)
T 1xwi_A 78 SSSDLVSK 85 (322)
T ss_dssp ECCSSCCS
T ss_pred EhHHHHhh
Confidence 99888653
No 48
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.91 E-value=0.014 Score=58.05 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=68.2
Q ss_pred HHHHHhcccCCCccccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHH
Q 004011 436 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 515 (779)
Q Consensus 436 k~~~~~~Vvdg~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA 515 (779)
.+.+.+.+++ +.-.++|+++-- .+..+..|..+....+.+.++. ..+....+.|||.||+| .-..+||||||
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~i~G--~~~~~~~l~~~i~~~~~~~~~~---~~~~~~~~~vll~Gp~G--tGKT~la~~la 75 (297)
T 3b9p_A 4 VQLILDEIVE-GGAKVEWTDIAG--QDVAKQALQEMVILPSVRPELF---TGLRAPAKGLLLFGPPG--NGKTLLARAVA 75 (297)
T ss_dssp HHHHHTTTBC-CSSCCCGGGSCC--CHHHHHHHHHHTHHHHHCGGGS---CGGGCCCSEEEEESSSS--SCHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCCCCHHHhCC--hHHHHHHHHHHHHhhhhCHHHH---hcCCCCCCeEEEECcCC--CCHHHHHHHHH
Confidence 3444455554 345789998644 6888888888877677665543 23445578999999999 57999999999
Q ss_pred hhccCeEEEEeccCCCCCC
Q 004011 516 KHFSARLLIVDSLLLPGGS 534 (779)
Q Consensus 516 ~~F~AkLLilDs~~l~G~~ 534 (779)
++++.+++-++...+.+..
T Consensus 76 ~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 76 TECSATFLNISAASLTSKY 94 (297)
T ss_dssp HHTTCEEEEEESTTTSSSS
T ss_pred HHhCCCeEEeeHHHHhhcc
Confidence 9999999999988886543
No 49
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.60 E-value=0.021 Score=59.48 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=65.3
Q ss_pred HHhcccCCCccccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 004011 439 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (779)
Q Consensus 439 ~~~~Vvdg~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F 518 (779)
+.+.|++. .-.++|+++ +-.+..+..|....-..+++.++.+ .+....+.|||.||+| .-..+||||||+.+
T Consensus 70 i~~~i~~~-~~~~~~~~i--~G~~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vLl~GppG--tGKT~la~aia~~~ 141 (357)
T 3d8b_A 70 IMNEIMDH-GPPVNWEDI--AGVEFAKATIKEIVVWPMLRPDIFT---GLRGPPKGILLFGPPG--TGKTLIGKCIASQS 141 (357)
T ss_dssp HHHHTBCC-SCCCCGGGS--CSCHHHHHHHHHHTHHHHHCTTTSC---GGGSCCSEEEEESSTT--SSHHHHHHHHHHHT
T ss_pred HHhhcccC-CCCCCHHHh--CChHHHHHHHHHHHHHHhhChHhHh---hccCCCceEEEECCCC--CCHHHHHHHHHHHc
Confidence 34444443 346889886 4467888888887766677665532 2345567899999999 68999999999999
Q ss_pred cCeEEEEeccCCCCC
Q 004011 519 SARLLIVDSLLLPGG 533 (779)
Q Consensus 519 ~AkLLilDs~~l~G~ 533 (779)
+.+++.++...+.+.
T Consensus 142 ~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 142 GATFFSISASSLTSK 156 (357)
T ss_dssp TCEEEEEEGGGGCCS
T ss_pred CCeEEEEehHHhhcc
Confidence 999999999888764
No 50
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.59 E-value=0.014 Score=63.12 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=61.7
Q ss_pred HHHHHHhcccCCCccccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 004011 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (779)
Q Consensus 435 fk~~~~~~Vvdg~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKAL 514 (779)
+++.+...|+ -+.-.++|+++-- .+..|..|..+.-.+|++.++.. ......+.|||.||+| .-..+|||||
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G--~~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~vLL~GppG--tGKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAG--LEGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPG--TGKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGSCS--CHHHHHHHHHHHTHHHHCTTTTS---GGGCCCSEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcC--HHHHHHHHHHHHHHHhhCHHHhh---ccCCCCceEEEECCCC--CCHHHHHHHH
Confidence 3444444444 3566889999744 67888889888877888766532 1223457899999999 5799999999
Q ss_pred Hhhc-cCeEEEEeccCCCCC
Q 004011 515 AKHF-SARLLIVDSLLLPGG 533 (779)
Q Consensus 515 A~~F-~AkLLilDs~~l~G~ 533 (779)
|+++ ++.++.++...|.+.
T Consensus 188 a~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp HHHCCSSEEEEECCC-----
T ss_pred HHHcCCCCEEEEeHHHHHhh
Confidence 9999 999999999888653
No 51
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.59 E-value=0.01 Score=60.70 Aligned_cols=79 Identities=27% Similarity=0.245 Sum_probs=63.3
Q ss_pred CccccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 447 ~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+.-+++|+++.- .+..|..|..+...++++.++.+. .....+.|||.||+| .-..+||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G--~~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAG--LEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPG--TGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCS--CHHHHHHHHHHTHHHHHCGGGCCT---TCCCCCEEEEECSSS--SCHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcC--hHHHHHHHHHHHHHHHhCHHHHhc---CCCCCCeEEEECCCC--CcHHHHHHHHHHHHCCCEEEEc
Confidence 345688988654 788999999888878887766543 233467899999999 5799999999999999999999
Q ss_pred ccCCCC
Q 004011 527 SLLLPG 532 (779)
Q Consensus 527 s~~l~G 532 (779)
...|.+
T Consensus 84 ~~~l~~ 89 (322)
T 3eie_A 84 SSDLVS 89 (322)
T ss_dssp HHHHHT
T ss_pred hHHHhh
Confidence 877754
No 52
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.38 E-value=0.014 Score=61.16 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=67.7
Q ss_pred HHHHHHhcccCCCccccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 004011 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (779)
Q Consensus 435 fk~~~~~~Vvdg~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKAL 514 (779)
+.+.+.+.++++ .-.++|+++-- .+..+..|.......+.+.++.. .+....+.|||.||+| .-..+||+|+
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~~iiG--~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppG--tGKT~la~ai 168 (389)
T 3vfd_A 97 LANLIMNEIVDN-GTAVKFDDIAG--QDLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPG--NGKTMLAKAV 168 (389)
T ss_dssp CCTTGGGTTBCC-SCCCCGGGSCS--CHHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTT--SCHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCCChHHhCC--HHHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCC--CCHHHHHHHH
Confidence 444555566664 35788998654 67788888887776776655532 3345578999999999 5799999999
Q ss_pred HhhccCeEEEEeccCCCCCC
Q 004011 515 AKHFSARLLIVDSLLLPGGS 534 (779)
Q Consensus 515 A~~F~AkLLilDs~~l~G~~ 534 (779)
|++++.+++.++...|.+..
T Consensus 169 a~~~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 169 AAESNATFFNISAASLTSKY 188 (389)
T ss_dssp HHHTTCEEEEECSCCC----
T ss_pred HHhhcCcEEEeeHHHhhccc
Confidence 99999999999998887643
No 53
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.33 E-value=0.0087 Score=70.29 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=60.3
Q ss_pred ccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccC
Q 004011 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (779)
Q Consensus 450 ~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~ 529 (779)
+|+|++.-= -++.|..|.......|+|.++.+... ....+.|||.||+| .-..+||||||+++++.++.++..+
T Consensus 200 ~v~~~dIgG--l~~~~~~l~e~v~~pl~~p~~f~~~g--~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~~ 273 (806)
T 3cf2_A 200 EVGYDDIGG--CRKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCS--CCTTHHHHHHHHHHHHHCCGGGTSCC--CCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHHH
T ss_pred CCChhhhcC--HHHHHHHHHHHHHHHccCHHHHhhcC--CCCCCeEEEECCCC--CCHHHHHHHHHHHhCCeEEEEEhHH
Confidence 577877655 36778888888777899987643211 23457899999999 5899999999999999999999888
Q ss_pred CCC
Q 004011 530 LPG 532 (779)
Q Consensus 530 l~G 532 (779)
|.+
T Consensus 274 l~s 276 (806)
T 3cf2_A 274 IMS 276 (806)
T ss_dssp HHS
T ss_pred hhc
Confidence 743
No 54
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.77 E-value=0.045 Score=52.82 Aligned_cols=75 Identities=24% Similarity=0.213 Sum_probs=52.4
Q ss_pred ccccccccccchhhHHHHHHhhhhccccCcc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEecc
Q 004011 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (779)
Q Consensus 450 ~VSFd~FPYYLSE~TK~vL~saayvHLk~~~-~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~ 528 (779)
+++|+++-- .+..|..|....-. +++.+ +..+. ....+.|||.||+| .-..+||||||++++.+++.++..
T Consensus 2 ~~~~~~i~G--~~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAG--MHEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPG--CGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCS--CHHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCC--HHHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEechH
Confidence 577888643 46677777665433 33322 22222 13457799999999 579999999999999999999998
Q ss_pred CCCC
Q 004011 529 LLPG 532 (779)
Q Consensus 529 ~l~G 532 (779)
.+..
T Consensus 74 ~~~~ 77 (262)
T 2qz4_A 74 EFVE 77 (262)
T ss_dssp TTSS
T ss_pred HHHh
Confidence 8864
No 55
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.01 E-value=0.053 Score=53.37 Aligned_cols=80 Identities=24% Similarity=0.183 Sum_probs=61.2
Q ss_pred ccccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 448 ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.-.++|+++.- -+..+..|.......+++.+.. ++. + ...+.|||.||+| .-..+||||||++++.+++.++
T Consensus 11 ~~~~~~~~i~G--~~~~~~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~G~~G--tGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 11 RPNVRYEDIGG--LEKQMQEIREVVELPLKHPELFEKVG--I-EPPKGILLYGPPG--TGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp SCCCCGGGSCS--CHHHHHHHHHHTHHHHHCHHHHHHHC--C-CCCSEEEEESSSS--SSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHhcC--HHHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 34678888654 6788888888777677776554 222 1 3456799999999 5789999999999999999999
Q ss_pred ccCCCCCC
Q 004011 527 SLLLPGGS 534 (779)
Q Consensus 527 s~~l~G~~ 534 (779)
...+.+..
T Consensus 84 ~~~~~~~~ 91 (285)
T 3h4m_A 84 GSELVKKF 91 (285)
T ss_dssp GGGGCCCS
T ss_pred hHHHHHhc
Confidence 98887643
No 56
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.01 E-value=0.03 Score=57.94 Aligned_cols=69 Identities=26% Similarity=0.337 Sum_probs=53.7
Q ss_pred hhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCC
Q 004011 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (779)
Q Consensus 461 SE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~ 531 (779)
.+..+..|..+...|.+...............+.|||.||+| .-..+||||||++++.+++.++...+.
T Consensus 20 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG--tGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 20 QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG--SGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 466777777777767665444333445556678999999999 579999999999999999999988764
No 57
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.97 E-value=0.042 Score=60.59 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=53.4
Q ss_pred hhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 461 SE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
-++.|..|..|.+-|+++..+....+. ....+.|||.||+| .-..+||||||+.+++.++.+|.+.+..
T Consensus 20 qe~ak~~l~~av~~~~~r~~~~~~~~~-~~~~~~iLl~GppG--tGKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 20 QADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTTTT-TCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccc-ccCCceEEEEcCCC--CCHHHHHHHHHHHcCCCceeecchhhcc
Confidence 478999999999888777655432211 12336799999999 5788999999999999999999988754
No 58
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.56 E-value=0.037 Score=56.16 Aligned_cols=77 Identities=22% Similarity=0.215 Sum_probs=58.1
Q ss_pred ccccccccccccchhhHHHHHHhhhhccccCcccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 448 ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~s-Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.-.++|+++-- .+..|..|..+.-..|++.+.. +++ -...+.|||.||+| .-..+||||||++.+..++.++
T Consensus 9 ~~~~~~~di~G--~~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~~~vLL~Gp~G--tGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 9 VPQVTWEDIGG--LEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPG--CGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCGGGSCS--CHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCSEEEEECSSS--SSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCHHHhCC--HHHHHHHHHHHHHHHhhCHHHHHHcC---CCCCceEEEECCCC--cCHHHHHHHHHHHhCCCEEEEE
Confidence 34678888543 6778888888776667765543 332 13456899999999 5789999999999999999998
Q ss_pred ccCCC
Q 004011 527 SLLLP 531 (779)
Q Consensus 527 s~~l~ 531 (779)
...+.
T Consensus 82 ~~~l~ 86 (301)
T 3cf0_A 82 GPELL 86 (301)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 77663
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.52 E-value=0.032 Score=54.60 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=56.4
Q ss_pred cCCCccccccccccccchhhHHHHHHhhhhccccCccc-ccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeE
Q 004011 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (779)
Q Consensus 444 vdg~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~-sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkL 522 (779)
++.+...++|+++-- .+..+..|....- .+++.+. .++.. ...+.|||.||+| .-..+||||||++++.++
T Consensus 1 i~~~~~~~~~~~i~G--~~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~G--tGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDMAG--NEEAKEEVVEIVD-FLKYPERYANLGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTSSS--CTTTHHHHHHHHH-HHHCHHHHHHHSC---CCCSCCCCBCSSC--SSHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHhCC--cHHHHHHHHHHHH-HHHChHHHHHCCC---CCCceEEEECCCC--CcHHHHHHHHHHHhCCCE
Confidence 345677889998654 4666666666543 2544332 22222 2234599999999 578999999999999999
Q ss_pred EEEeccCCCC
Q 004011 523 LIVDSLLLPG 532 (779)
Q Consensus 523 LilDs~~l~G 532 (779)
+.++...+..
T Consensus 73 ~~v~~~~~~~ 82 (268)
T 2r62_A 73 FSMGGSSFIE 82 (268)
T ss_dssp CCCCSCTTTT
T ss_pred EEechHHHHH
Confidence 9998887754
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.24 E-value=0.087 Score=51.43 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=53.6
Q ss_pred CCccccccccccccchhhHHHHHHhhhhccccCcc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEE
Q 004011 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (779)
Q Consensus 446 g~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~-~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLi 524 (779)
.+...++|+++-- .+..|..|....- .+++.+ +.++.. ...+.|||.||+| .-..+||||||+.++.+++.
T Consensus 4 ~~~~~~~~~~i~G--~~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 4 EDQIKTTFADVAG--CDEAKEEVAELVE-YLREPSRFQKLGG---KIPKGVLMVGPPG--TGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp ECSSCCCGGGSCS--CHHHHHHTHHHHH-HHHCGGGC--------CCCCEEEEECCTT--SCHHHHHHHHHHHHTCCEEE
T ss_pred ccCCCCCHHHhcC--cHHHHHHHHHHHH-HHhCHHHHHHcCC---CCCCeEEEECcCC--CCHHHHHHHHHHHcCCCEEE
Confidence 3456788888643 5666666665443 244432 212211 2345699999999 57999999999999999999
Q ss_pred EeccCCCC
Q 004011 525 VDSLLLPG 532 (779)
Q Consensus 525 lDs~~l~G 532 (779)
++..++..
T Consensus 76 i~~~~~~~ 83 (257)
T 1lv7_A 76 ISGSDFVE 83 (257)
T ss_dssp ECSCSSTT
T ss_pred EeHHHHHH
Confidence 99888754
No 61
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=93.20 E-value=0.052 Score=65.97 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=62.4
Q ss_pred CCCCccCccccCCcccCCCCeeeEeecCCCCCccCCCCCCCCCCcCCceeeecccCCCCceeeeccCCCCCCCCCCCCCC
Q 004011 584 LPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCE 663 (779)
Q Consensus 584 ~~k~e~s~~ts~~~t~kkGdrVkyvGs~~~~s~~~~~~R~ps~G~rG~V~l~fE~N~ssKVgVrFDk~i~dg~Dlg~~ce 663 (779)
+.++..+..-+..+.|+=||||.||..++. .+.|.||-|+..--.+..--+-|.||.+.-.|+.|||.|.
T Consensus 1051 llkP~~a~~~L~~Q~F~LGDRVv~VqdsG~----------VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrcs 1120 (1155)
T 3pie_A 1051 ILNAESSYVLLRSQRFHLGDRVMYIQDSGK----------VPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQ 1120 (1155)
T ss_pred eeCHHHhhccccCCcccCCCeEEEecCCCC----------CccccceEEEEEecCCCceEEEEEeccCccCCCccccccc
Confidence 344444444457788989999999986542 4578899998766655556799999999999999999999
Q ss_pred CCCcceeccc
Q 004011 664 DDHGFFCTAS 673 (779)
Q Consensus 664 ~~~gffc~a~ 673 (779)
+..|+-++++
T Consensus 1121 ~~RG~~v~~s 1130 (1155)
T 3pie_A 1121 TRRGLGLDSS 1130 (1155)
T ss_pred ccccccccHH
Confidence 9999777765
No 62
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.75 E-value=0.083 Score=53.50 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=54.1
Q ss_pred ccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccC
Q 004011 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (779)
Q Consensus 450 ~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~ 529 (779)
+|+|++.-= -++.|..|..+...++++++.-+.. +|... +.|||.||+| .-.-+|+||||...+..++.++...
T Consensus 6 ~~~~~di~g--~~~~~~~l~~~i~~~~~~~~~l~~~-~l~~~-~GvlL~Gp~G--tGKTtLakala~~~~~~~i~i~g~~ 79 (274)
T 2x8a_A 6 NVTWADIGA--LEDIREELTMAILAPVRNPDQFKAL-GLVTP-AGVLLAGPPG--CGKTLLAKAVANESGLNFISVKGPE 79 (274)
T ss_dssp ------CCH--HHHHHHHHHHHHTHHHHSHHHHHHT-TCCCC-SEEEEESSTT--SCHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CCCHHHhCC--HHHHHHHHHHHHHHHhhCHHHHHHc-CCCCC-CeEEEECCCC--CcHHHHHHHHHHHcCCCEEEEEcHH
Confidence 577887643 5889999988877778776654322 23333 3399999999 5788999999999999999999877
Q ss_pred CCC
Q 004011 530 LPG 532 (779)
Q Consensus 530 l~G 532 (779)
+..
T Consensus 80 l~~ 82 (274)
T 2x8a_A 80 LLN 82 (274)
T ss_dssp TCS
T ss_pred HHh
Confidence 754
No 63
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.31 E-value=0.094 Score=54.40 Aligned_cols=69 Identities=29% Similarity=0.414 Sum_probs=52.5
Q ss_pred hhhHHHHHHhhhhccccCccccc---------------ccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEE
Q 004011 461 SDITKNVLIASTYVHLKCNNFAK---------------YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 461 SE~TK~vL~saayvHLk~~~~sK---------------yt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLil 525 (779)
-++.|..|..+.+-|+++..... -........+.|||.||+| .-..+|||+||+.++.++..+
T Consensus 26 q~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G--tGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 26 QEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG--SGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC--CCHHHHHHHHHHHhCCCEEEe
Confidence 47888888888887776543210 0012344567899999999 578999999999999999999
Q ss_pred eccCCC
Q 004011 526 DSLLLP 531 (779)
Q Consensus 526 Ds~~l~ 531 (779)
|...+.
T Consensus 104 ~~~~~~ 109 (376)
T 1um8_A 104 DATSLT 109 (376)
T ss_dssp EGGGCC
T ss_pred cchhhh
Confidence 998874
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.83 E-value=0.15 Score=51.84 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=33.5
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
+.|||.||+| .-..+||||||++++++++.++...|..
T Consensus 37 ~~lLl~GppG--tGKT~la~aiA~~l~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 37 LILGIWGGKG--QGKSFQCELVFRKMGINPIMMSAGELES 74 (293)
T ss_dssp SEEEEEECTT--SCHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence 5688999999 5789999999999999999999877644
No 65
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.96 E-value=0.32 Score=54.17 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=54.4
Q ss_pred cccccccccccchhhHHHHHHhhhhccccCcc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 449 i~VSFd~FPYYLSE~TK~vL~saayvHLk~~~-~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
..++|+++-- .+..|.-|...... +++.. +....- ...+.|||.||+| .-..+||||||++.++.++.++.
T Consensus 26 ~~~~f~dv~G--~~~~k~~l~~lv~~-l~~~~~~~~lg~---~ip~GvLL~GppG--tGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 26 PKVTFKDVAG--AEEAKEELKEIVEF-LKNPSRFHEMGA---RIPKGVLLVGPPG--VGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp CCCCTTSSCS--CHHHHHHHHHHHHH-HHCGGGTTTTSC---CCCSEEEEECSSS--SSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCCHHHcCC--cHHHHHHHHHHHHH-hhchhhhhhccC---CCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEeh
Confidence 7889998654 56777777666542 44332 212211 2334599999999 57899999999999999999998
Q ss_pred cCCCC
Q 004011 528 LLLPG 532 (779)
Q Consensus 528 ~~l~G 532 (779)
.+|..
T Consensus 98 ~~~~~ 102 (499)
T 2dhr_A 98 SDFVE 102 (499)
T ss_dssp GGGTS
T ss_pred hHHHH
Confidence 87753
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.93 E-value=0.1 Score=51.25 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=49.0
Q ss_pred hhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 461 SE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
.++.+..|..+..-|+++..+..-.+ -....+.|||.||+| .-..+|||+||++++.+++.+|...+..
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~G--tGKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTT--SSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred hHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 45666666666665554443321111 012346899999999 5789999999999999999999988864
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.61 E-value=0.37 Score=53.40 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=57.0
Q ss_pred ccCCC-ccccccccccccchhhHHHHHHhhhhccccCcc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccC
Q 004011 443 ILGPE-NIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (779)
Q Consensus 443 Vvdg~-ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~-~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~A 520 (779)
++... ...++|+++-= .+..|.-|..... .+++.+ +.++.- ...+.|||.||+| .-..+||||||+..++
T Consensus 4 ~~~~~~~~~~~f~di~G--~~~~~~~l~e~v~-~l~~~~~~~~~g~---~~p~gvLL~GppG--tGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGG--AEEAIEELKEVVE-FLKDPSKFNRIGA---RMPKGILLVGPPG--TGKTLLARAVAGEANV 75 (476)
T ss_dssp -CCCCCSCCCCGGGCCS--CHHHHHHHHHHHH-HHHCTHHHHTTTC---CCCSEEEEECCTT--SSHHHHHHHHHHHHTC
T ss_pred eeccCCCCCCCHHHhCC--cHHHHHHHHHHHH-HhhChHHHhhcCC---CCCCeEEEECCCC--CCHHHHHHHHHHHcCC
Confidence 44455 78899998643 4666666666543 354432 212211 2335699999999 5789999999999999
Q ss_pred eEEEEeccCCCC
Q 004011 521 RLLIVDSLLLPG 532 (779)
Q Consensus 521 kLLilDs~~l~G 532 (779)
+++-++...|..
T Consensus 76 ~f~~is~~~~~~ 87 (476)
T 2ce7_A 76 PFFHISGSDFVE 87 (476)
T ss_dssp CEEEEEGGGTTT
T ss_pred CeeeCCHHHHHH
Confidence 999999888754
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.46 E-value=0.35 Score=47.09 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=51.9
Q ss_pred CCccccccccccccchhhHHHHHHhhhhccccCcc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEE
Q 004011 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (779)
Q Consensus 446 g~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~-~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLi 524 (779)
.+...++|+++-- .++.+..|-..... +++.. +... ++. ..+.|||.||+| .-..+|+||||+..++..+.
T Consensus 8 ~~~~~~~~~~i~g--~~~~~~~l~~l~~~-~~~~~~~~~~--~~~-~~~g~ll~G~~G--~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 8 TEAPKVTFKDVAG--AEEAKEELKEIVEF-LKNPSRFHEM--GAR-IPKGVLLVGPPG--VGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp CCCCSCCGGGCCS--CHHHHHHHHHHHHH-HHCHHHHHHT--TCC-CCSEEEEECCTT--SSHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCCCHHHhCC--cHHHHHHHHHHHHH-HHCHHHHHHc--CCC-CCCeEEEECCCC--CCHHHHHHHHHHHhCCCEEE
Confidence 5567899998754 46666666555442 23221 1111 222 233499999999 57899999999999999988
Q ss_pred EeccCC
Q 004011 525 VDSLLL 530 (779)
Q Consensus 525 lDs~~l 530 (779)
++..++
T Consensus 80 ~~~~~~ 85 (254)
T 1ixz_A 80 ASGSDF 85 (254)
T ss_dssp EEHHHH
T ss_pred eeHHHH
Confidence 887654
No 69
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.83 E-value=0.56 Score=46.51 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=37.7
Q ss_pred ccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc-------CeEEEEeccCCCCCC
Q 004011 484 YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS-------ARLLIVDSLLLPGGS 534 (779)
Q Consensus 484 yt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~-------AkLLilDs~~l~G~~ 534 (779)
|+-.-......|||.||+| .-..+||+|||++++ .+++.++...|.+..
T Consensus 59 ~g~~~~~~~~~vll~G~~G--tGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~ 114 (309)
T 3syl_A 59 LGLAHETPTLHMSFTGNPG--TGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY 114 (309)
T ss_dssp HTCCSSCCCCEEEEEECTT--SSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS
T ss_pred cCCCCCCCCceEEEECCCC--CCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc
Confidence 3333344566799999999 578999999999984 489999988886543
No 70
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.66 E-value=1.1 Score=49.27 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=38.9
Q ss_pred cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 483 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 483 Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
+.+.+-.+..+.|||+||+| .-..+||+|||++++.+++-++..++.+
T Consensus 68 ~~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 68 HAGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp CCCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred ccCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 33433334568999999999 6899999999999999999999877654
No 71
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.45 E-value=0.45 Score=52.60 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=53.0
Q ss_pred cccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCC
Q 004011 451 VSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (779)
Q Consensus 451 VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l 530 (779)
++|+++-- .+..+..|.......|++.++.+... ....+.|||.||+| .-.++||||||++.+.+++.++...+
T Consensus 201 ~~~~~i~G--~~~~~~~l~~~i~~~l~~~~~~~~~g--~~~~~~vLL~GppG--tGKT~lAraia~~~~~~fv~vn~~~l 274 (489)
T 3hu3_A 201 VGYDDIGG--CRKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPEI 274 (489)
T ss_dssp CCGGGCCS--CHHHHHHHHHHTHHHHHCHHHHHHHT--CCCCCEEEEECSTT--SSHHHHHHHHHHHCSSEEEEEEHHHH
T ss_pred CCHHHcCC--HHHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCcEEEECcCC--CCHHHHHHHHHHHhCCCEEEEEchHh
Confidence 46666433 35555556665555566655432111 23456799999999 57999999999999999999998777
Q ss_pred CC
Q 004011 531 PG 532 (779)
Q Consensus 531 ~G 532 (779)
..
T Consensus 275 ~~ 276 (489)
T 3hu3_A 275 MS 276 (489)
T ss_dssp HT
T ss_pred hh
Confidence 54
No 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.40 E-value=0.53 Score=50.77 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=36.6
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcc--CeEEEEeccCCCCCCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFS--ARLLIVDSLLLPGGSS 535 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~--AkLLilDs~~l~G~~s 535 (779)
.+.|||.||+| .-..+||||||++++ +.++.++.+.++....
T Consensus 63 ~~~iLl~GppG--tGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~ 106 (456)
T 2c9o_A 63 GRAVLLAGPPG--TGKTALALAIAQELGSKVPFCPMVGSEVYSTEI 106 (456)
T ss_dssp TCEEEEECCTT--SSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSS
T ss_pred CCeEEEECCCc--CCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhh
Confidence 46799999999 578999999999999 9999999998875433
No 73
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.40 E-value=0.73 Score=43.04 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=49.1
Q ss_pred HHHHHHhcccCCCccccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 004011 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (779)
Q Consensus 435 fk~~~~~~Vvdg~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKAL 514 (779)
.+..++..-++.+--..|||+|-+. +.+.+.++-.+ --.++. +... ...+.|||.||+| .-..+||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~-~~~~~~-----~~~~--~~~~~~~l~G~~G--tGKT~la~~i 74 (202)
T 2w58_A 6 QESLIQSMFMPREILRASLSDVDLN-DDGRIKAIRFA-ERFVAE-----YEPG--KKMKGLYLHGSFG--VGKTYLLAAI 74 (202)
T ss_dssp HHHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHHHH-HHHHHH-----CCSS--CCCCEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHHHH-HHHHHH-----hhhc--cCCCeEEEECCCC--CCHHHHHHHH
Confidence 3455666666666567799998653 22333232211 111111 1000 0127899999999 5788999999
Q ss_pred Hhhc---cCeEEEEecc
Q 004011 515 AKHF---SARLLIVDSL 528 (779)
Q Consensus 515 A~~F---~AkLLilDs~ 528 (779)
|+++ +.+.+.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 75 ANELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHTTTCCEEEEEHH
T ss_pred HHHHHHcCCeEEEEEhH
Confidence 9988 5566666543
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.94 E-value=0.92 Score=52.96 Aligned_cols=78 Identities=21% Similarity=0.121 Sum_probs=56.5
Q ss_pred ccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccC
Q 004011 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (779)
Q Consensus 450 ~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~ 529 (779)
.++|++. +--+..|..|..+.-..+++.+.. ..---...+.|||.||+| .-..+||||||+.++..++.++...
T Consensus 473 ~v~~~di--~gl~~vk~~l~~~v~~~~~~~~~~--~~~~~~~~~~vLL~GppG--tGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 473 QVTWEDI--GGLEDVKRELQELVQYPVEHPDKF--LKFGMTPSKGVLFYGPPG--CGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCSSCSS--SCCCCHHHHHHTTTTSSSSSCTTT--TCCCCCCCCCCCCBCCTT--SSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred ccccccc--ccchhhhhhHHHHHHhhhhchHHH--HhcCCCCCceeEEECCCC--CCHHHHHHHHHHHhCCCEEEEechH
Confidence 4566653 346788888888766666654432 221124567799999999 5789999999999999999999888
Q ss_pred CCCC
Q 004011 530 LPGG 533 (779)
Q Consensus 530 l~G~ 533 (779)
+...
T Consensus 547 l~~~ 550 (806)
T 1ypw_A 547 LLTM 550 (806)
T ss_dssp STTC
T ss_pred hhhh
Confidence 7653
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.57 E-value=1.4 Score=43.02 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=39.3
Q ss_pred cccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc---CeEEEEec
Q 004011 451 VSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS---ARLLIVDS 527 (779)
Q Consensus 451 VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~---AkLLilDs 527 (779)
.||++|- --++..+.++-.+..+ .....-|||.||+| .-..+|||||+++.. .+++.++.
T Consensus 3 ~~f~~~i-g~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~G--tGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 3 EYKDNLL-GEANSFLEVLEQVSHL--------------APLDKPVLIIGERG--TGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp --------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTT--SCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred cccccce-eCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCC--CcHHHHHHHHHHhcCccCCCeEEEec
Confidence 5788873 3455555554333221 01236799999999 578999999999985 67999998
Q ss_pred cCC
Q 004011 528 LLL 530 (779)
Q Consensus 528 ~~l 530 (779)
..+
T Consensus 66 ~~~ 68 (265)
T 2bjv_A 66 AAL 68 (265)
T ss_dssp GGS
T ss_pred CCC
Confidence 766
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.29 E-value=0.91 Score=45.07 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=50.5
Q ss_pred ccccccccccccchhhHHHHHHhhhhccccCcc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 448 ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~-~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
...++|+++.- .++.+..|-..... ++... +... ++. ..+.|||.||+| .-..+|+||||+..+...+.++
T Consensus 34 ~~~~~~~~i~g--~~~~~~~l~~l~~~-~~~~~~l~~~--~~~-~~~gvll~Gp~G--tGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 34 APKVTFKDVAG--AEEAKEELKEIVEF-LKNPSRFHEM--GAR-IPKGVLLVGPPG--VGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CCCCCGGGSSS--CHHHHHHHHHHHHH-HHCHHHHHHT--TCC-CCCEEEEECCTT--SSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHhCC--hHHHHHHHHHHHHH-HHCHHHHHHc--CCC-CCCeEEEECCCc--ChHHHHHHHHHHHcCCCEEEec
Confidence 36789998754 46666666655442 22221 1111 222 223499999999 5789999999999999998888
Q ss_pred ccCC
Q 004011 527 SLLL 530 (779)
Q Consensus 527 s~~l 530 (779)
..++
T Consensus 106 ~~~~ 109 (278)
T 1iy2_A 106 GSDF 109 (278)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 77
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.93 E-value=0.92 Score=52.94 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=56.4
Q ss_pred ccccccccccchhhHHHHHHhhhhccccCcccccccCCCC-CCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEecc
Q 004011 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLP-TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (779)
Q Consensus 450 ~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Ls-s~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~ 528 (779)
.|+|++.-- -+..+..|....-..|+|.++. .+|. .....|||.||+| .-..+||||||+..+..++.++..
T Consensus 200 ~v~~~di~G--~~~~~~~l~e~i~~~l~~~~~~---~~l~i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~ 272 (806)
T 1ypw_A 200 EVGYDDVGG--CRKQLAQIKEMVELPLRHPALF---KAIGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SCCGGGCCS--CSGGGGHHHHHHHHHHHCGGGG---TSSCCCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHH
T ss_pred CCCHHHhCC--hHHHHHHHHHHHHHHhhCHHHH---HhcCCCCCCeEEEECcCC--CCHHHHHHHHHHHcCCcEEEEEch
Confidence 577777543 3555666666666677777653 2332 4567899999999 478999999999999999999987
Q ss_pred CCCC
Q 004011 529 LLPG 532 (779)
Q Consensus 529 ~l~G 532 (779)
.+.+
T Consensus 273 ~l~~ 276 (806)
T 1ypw_A 273 EIMS 276 (806)
T ss_dssp HHSS
T ss_pred Hhhh
Confidence 7754
No 78
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.59 E-value=0.87 Score=44.83 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=32.4
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccC
Q 004011 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (779)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~ 529 (779)
..+.|||.||+| .-..+||+|||+..+.+++.++...
T Consensus 63 ~~~~vLl~G~~G--tGKT~la~~ia~~~~~~~~~i~~~~ 99 (272)
T 1d2n_A 63 PLVSVLLEGPPH--SGKTALAAKIAEESNFPFIKICSPD 99 (272)
T ss_dssp SEEEEEEECSTT--SSHHHHHHHHHHHHTCSEEEEECGG
T ss_pred CCeEEEEECCCC--CcHHHHHHHHHHHhCCCEEEEeCHH
Confidence 446899999999 5789999999999999999887654
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.40 E-value=1.3 Score=39.91 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=32.7
Q ss_pred CCCCceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEeccCCCC
Q 004011 490 TMCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLPG 532 (779)
Q Consensus 490 s~s~rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilDs~~l~G 532 (779)
....-|||.||+| .-.++|||||+++. +.+++ +|...+..
T Consensus 22 ~~~~~vll~G~~G--tGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 22 ETDIAVWLYGAPG--TGRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp TCCSCEEEESSTT--SSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CCCCCEEEECCCC--CCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 3456699999999 47899999999987 77888 88877654
No 80
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.02 E-value=3.4 Score=41.49 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=30.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~ 529 (779)
+-+|+.||+| .-..+||+|||++++.+++-++.+.
T Consensus 49 ~~~L~~G~~G--~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 49 HIILHSPSPG--TGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SEEEECSSTT--SSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred eEEEeeCcCC--CCHHHHHHHHHHHhCCCEEEEcccc
Confidence 4689999998 6899999999999999999998654
No 81
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.02 E-value=2.9 Score=38.98 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcc---CeEEEEeccCCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFS---ARLLIVDSLLLP 531 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~---AkLLilDs~~l~ 531 (779)
.+.|||.||+| .-..+||++||+.+. .+++.++...+.
T Consensus 52 ~~~~ll~G~~G--~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 52 VQAIYLWGPVK--SGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CSEEEEECSTT--SSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 47899999999 578899999999886 567777765553
No 82
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=76.26 E-value=1.2 Score=54.42 Aligned_cols=66 Identities=26% Similarity=0.295 Sum_probs=38.6
Q ss_pred CcccCCCCeeeEeecCCCCCccCCCCCCCCCCcCCceeeecccC---C---------CCceeeeccCCCCCCCCCCCCCC
Q 004011 596 NYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDN---D---------FSKIGVRFDRSIPEGNNLGGFCE 663 (779)
Q Consensus 596 ~~t~kkGdrVkyvGs~~~~s~~~~~~R~ps~G~rG~V~l~fE~N---~---------ssKVgVrFDk~i~dg~Dlg~~ce 663 (779)
++.|+=||||-||..+.. -+.|.||-|+...... + .-.+-|.||++...|++++|.|+
T Consensus 1056 ~q~F~LgDRVV~V~dsg~----------VP~g~rGTVVGI~~~~~~~~~r~e~~~~~~~~~dVlFD~~F~gG~~i~G~~~ 1125 (1140)
T 2y35_A 1056 KRPVRLFDRVVIVRTIYM----------VPVGTKGTVIGIHPVTDPNPVRLECVHAVDTFCKVLFDSPVPNCNNIHGIAE 1125 (1140)
T ss_dssp SSCCCTTCEEEECSCBTT----------BCTTCEEEECCBEEEECSSCSSTTTTTCEEEEEEEEESSCC-----------
T ss_pred CCcccCcCeEEEEccCCC----------CcccceeEEEEEecCCCCcccccccccccCceeEEEecCCcCCCcccCCccc
Confidence 467788999999986532 4578899998766432 2 22378999999999999999887
Q ss_pred CCCcceecc
Q 004011 664 DDHGFFCTA 672 (779)
Q Consensus 664 ~~~gffc~a 672 (779)
..||-.+.
T Consensus 1126 -~r~yr~p~ 1133 (1140)
T 2y35_A 1126 -DRVYKVPE 1133 (1140)
T ss_dssp --CEEEEEG
T ss_pred -cceeeccc
Confidence 56665544
No 83
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.97 E-value=2.1 Score=35.22 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.1
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEccC
Q 004011 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (779)
Q Consensus 199 tV~VNGkkVgKg~kviL~nGDEIvfs~~ 226 (779)
.|.|||+.+.+. ..|+.||||.|-.+
T Consensus 48 ~v~vNg~~v~~~--~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 48 QVAVNEEFVQKS--DFIQPNDTVALIPP 73 (77)
T ss_dssp EEEETTEEECTT--SEECTTCEEEEECS
T ss_pred EEEECCEECCCC--CCcCCCCEEEEECC
Confidence 489999999985 69999999998543
No 84
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=74.00 E-value=2.2 Score=42.95 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=33.3
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~ 531 (779)
.+.|||.||+| .-..+||+++|+.++.++..++...+.
T Consensus 55 ~~~vll~G~~G--tGKT~la~~ia~~~~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 55 LDHILFSGPAG--LGKTTLANIISYEMSANIKTTAAPMIE 92 (338)
T ss_dssp CCCEEEECSTT--SSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred CCeEEEECcCC--CCHHHHHHHHHHHhCCCeEEecchhcc
Confidence 34699999999 589999999999999999999887663
No 85
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=70.93 E-value=2.3 Score=42.35 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=32.2
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l 530 (779)
.+.|||.||+| .-..+||+++|+.++.++..++...+
T Consensus 38 ~~~vll~G~~G--tGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 38 LEHLLLFGPPG--LGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp CCCCEEECCTT--CCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred CCcEEEECCCC--CCHHHHHHHHHHHhCCCEEEEecccc
Confidence 46799999999 57899999999999999988876655
No 86
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=70.62 E-value=2.8 Score=38.00 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=28.5
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
.-|+|+||+|+ -.-+++|+||+.++...+.+|.
T Consensus 4 ~~i~l~G~~Gs--GKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSA--GKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTS--SHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHhcCCCeEEecc
Confidence 46999999994 7889999999999988887665
No 87
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=70.47 E-value=3.1 Score=36.85 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F 518 (779)
.+.|||.||+| .-..+||+++|+.+
T Consensus 43 ~~~~ll~G~~G--~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPG--VGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTT--SCHHHHHHHHHHHH
T ss_pred CCceEEECCCC--CCHHHHHHHHHHHH
Confidence 46799999999 67889999999997
No 88
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.93 E-value=4.3 Score=40.96 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=30.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEecc
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~ 528 (779)
+.|||.||+| .-..+||||||+.++.++..+..+
T Consensus 47 ~~vll~G~pG--tGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 47 GHILLEGVPG--LAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp CCEEEESCCC--HHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCeEEEecC
Confidence 5799999999 689999999999999998877753
No 89
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.55 E-value=2.8 Score=41.39 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=31.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEeccCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLP 531 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilDs~~l~ 531 (779)
..|||.||+| .-..+|||+||+.+ +.+++.+|...+.
T Consensus 48 ~~~ll~G~~G--tGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 48 GSFLFLGPTG--VGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEEEESCSS--SSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred eEEEEECCCC--cCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 4699999999 57899999999998 6679999987764
No 90
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=68.54 E-value=2.2 Score=35.93 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.6
Q ss_pred eEEECCeecCC--CceEEeeCCCEEEEcc
Q 004011 199 EVEVNGNVHPK--DSQVVLRGGDELVFSP 225 (779)
Q Consensus 199 tV~VNGkkVgK--g~kviL~nGDEIvfs~ 225 (779)
.|.|||+.+.+ +....|+.||||.|-.
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 48999999975 5677899999999854
No 91
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=68.40 E-value=3.2 Score=35.49 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=23.3
Q ss_pred CceEEECCeecCCCceEEeeCCCEEEEccCCC
Q 004011 197 KGEVEVNGNVHPKDSQVVLRGGDELVFSPSGK 228 (779)
Q Consensus 197 NGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~ 228 (779)
+|.|.|||+.+ +. ...|+.||+|.+..+..
T Consensus 25 ~G~V~VNg~~~-~~-~~~v~~gd~I~v~~~~~ 54 (92)
T 2k6p_A 25 VGAVWLNGSCA-KA-SKEVKAGDTISLHYLKG 54 (92)
T ss_dssp HTCCEETTEEC-CT-TCBCCTTCEEEECCSSC
T ss_pred CCcEEECCEEc-CC-CCCcCCCCEEEEEeCCc
Confidence 56699999998 43 45679999999977654
No 92
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=68.16 E-value=2.7 Score=35.66 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=21.8
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEccC
Q 004011 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (779)
Q Consensus 199 tV~VNGkkVgKg~kviL~nGDEIvfs~~ 226 (779)
.|.|||+.+.. ...|+.||||.|-.|
T Consensus 60 ~v~VN~~~v~~--~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 60 NVLRNGEAAAL--GEATAAGDELALFPP 85 (89)
T ss_dssp EEEETTEECCT--TSBCCTTCEEEEECC
T ss_pred EEEECCEECCC--CcccCCCCEEEEECC
Confidence 58999999987 457999999998553
No 93
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=67.89 E-value=1 Score=40.66 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l 530 (779)
...|||.||+| .-..+|||||+++.+ +++.+|...+
T Consensus 27 ~~~vll~G~~G--tGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 27 TSPVFLTGEAG--SPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp SSCEEEEEETT--CCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CCcEEEECCCC--ccHHHHHHHHHHhCC-CeEEechhhC
Confidence 45699999999 468999999999988 7777776543
No 94
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=67.40 E-value=2.3 Score=34.48 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=22.9
Q ss_pred eEEECCeecCCC--ceEEeeCCCEEEEcc
Q 004011 199 EVEVNGNVHPKD--SQVVLRGGDELVFSP 225 (779)
Q Consensus 199 tV~VNGkkVgKg--~kviL~nGDEIvfs~ 225 (779)
.|.|||+.+.+. ....|+.||+|.|-+
T Consensus 31 ~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 479999999987 557899999998854
No 95
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.37 E-value=3.1 Score=44.10 Aligned_cols=39 Identities=38% Similarity=0.496 Sum_probs=33.9
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
.+.|+|+||+| --.-+|+++||+.+++.++-+|+..+|-
T Consensus 5 ~~~i~i~GptG--sGKTtla~~La~~l~~~iis~Ds~qvy~ 43 (323)
T 3crm_A 5 PPAIFLMGPTA--AGKTDLAMALADALPCELISVDSALIYR 43 (323)
T ss_dssp CEEEEEECCTT--SCHHHHHHHHHHHSCEEEEEECTTTTBT
T ss_pred CcEEEEECCCC--CCHHHHHHHHHHHcCCcEEeccchhhhc
Confidence 35799999999 4678899999999999999999987763
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=67.11 E-value=2.9 Score=42.99 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=27.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcc----CeEEEEecc
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFS----ARLLIVDSL 528 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~----AkLLilDs~ 528 (779)
.+.|||.||+| .-...||+|||+++. .+.+.+...
T Consensus 152 ~~~lll~G~~G--tGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMG--IGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 57899999999 578899999998765 566666543
No 97
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=66.64 E-value=3.9 Score=33.77 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.9
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEcc
Q 004011 199 EVEVNGNVHPKDSQVVLRGGDELVFSP 225 (779)
Q Consensus 199 tV~VNGkkVgKg~kviL~nGDEIvfs~ 225 (779)
.|.|||+.+.+.. .|+.||+|.|-+
T Consensus 41 ~vavN~~~v~~~~--~L~~gD~V~ii~ 65 (70)
T 1ryj_A 41 VVKKNGQIVIDEE--EIFDGDIIEVIR 65 (70)
T ss_dssp EEEETTEECCTTS--BCCTTCEEEEEE
T ss_pred EEEECCEECCCcc--cCCCCCEEEEEe
Confidence 4789999999986 999999998854
No 98
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=66.37 E-value=2.7 Score=38.48 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
.+.|+|.||+|+ -.-+++|+||+.++..++-.|.
T Consensus 5 ~~~i~l~G~~Gs--GKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGA--GKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTS--SHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHHhCCCEEEChH
Confidence 467999999994 6889999999999998776654
No 99
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=66.22 E-value=2.9 Score=34.63 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=22.2
Q ss_pred ceEEECCeecCCCceEEeeCCCEEEEccC
Q 004011 198 GEVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (779)
Q Consensus 198 GtV~VNGkkVgKg~kviL~nGDEIvfs~~ 226 (779)
-.|.|||+.|. +....|+.||||.|-.+
T Consensus 43 ~~vavN~~~v~-~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 43 CAIALNDHLID-NLNTPLKDGDVISLLPP 70 (74)
T ss_dssp CEEEESSSEEC-CTTCCCCTTCEEEEECC
T ss_pred cEEEECCEEcC-CCCcCCCCCCEEEEECC
Confidence 35899999975 45678999999998543
No 100
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=65.20 E-value=4.3 Score=36.13 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F 518 (779)
.+-|||.||+| .-..+||+++|+++
T Consensus 43 ~~~vll~G~~G--~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPG--VGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGG--GCHHHHHHHHHHHH
T ss_pred CCceEEECCCC--CCHHHHHHHHHHHH
Confidence 46799999999 67889999999987
No 101
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=65.14 E-value=3.5 Score=34.06 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEccC
Q 004011 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (779)
Q Consensus 199 tV~VNGkkVgKg~kviL~nGDEIvfs~~ 226 (779)
.|.|||+.++. ...|+.||||.|-.+
T Consensus 52 ~v~vN~~~v~~--~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 52 LAAVNQTLVSF--DHPLTDGDEVAFFPP 77 (81)
T ss_dssp EEEETTEECCT--TCBCCTTCEEEEECC
T ss_pred EEEECCEECCC--CCCCCCCCEEEEeCC
Confidence 48999999975 568999999998543
No 102
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=64.37 E-value=3.3 Score=35.43 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=22.7
Q ss_pred eEEECCeecCC--CceEEeeCCCEEEEccC
Q 004011 199 EVEVNGNVHPK--DSQVVLRGGDELVFSPS 226 (779)
Q Consensus 199 tV~VNGkkVgK--g~kviL~nGDEIvfs~~ 226 (779)
.|+|||+.+.. +...+|+.||||.|-.+
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEEC
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEECC
Confidence 48999999974 45678999999998543
No 103
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=64.09 E-value=3.4 Score=37.93 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=27.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+.|+|.|++|| -.-+++|+||+.+|++++=.|
T Consensus 3 ~~I~l~G~~Gs--GKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGS--GKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCC--CHHHHHHHHHHHcCCCEEeCc
Confidence 57999999994 688899999999998866544
No 104
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.14 E-value=4.3 Score=46.18 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=32.9
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCC
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~ 531 (779)
.|||.||+| .-..+|||+||+.++.+++.+|.+.+.
T Consensus 490 ~~ll~G~~G--tGKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 490 SFLFAGPTG--VGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp EEEEECSTT--SSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred EEEEECCCC--CcHHHHHHHHHHHhcCCEEEEechhhc
Confidence 599999999 578999999999999999999988774
No 105
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=62.92 E-value=2.7 Score=36.87 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=22.9
Q ss_pred eEEECCeecCC--CceEEeeCCCEEEEccC
Q 004011 199 EVEVNGNVHPK--DSQVVLRGGDELVFSPS 226 (779)
Q Consensus 199 tV~VNGkkVgK--g~kviL~nGDEIvfs~~ 226 (779)
.|.|||+.+.+ +....|+.||||.|-.+
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEECC
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEECC
Confidence 48999999965 55779999999998543
No 106
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=62.60 E-value=3.7 Score=37.63 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=28.5
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
.+.|+|.||+|+ -.-+++|+||++++...+-+|.
T Consensus 11 ~~~i~i~G~~Gs--GKst~~~~l~~~~~~~~~~~d~ 44 (180)
T 3iij_A 11 LPNILLTGTPGV--GKTTLGKELASKSGLKYINVGD 44 (180)
T ss_dssp CCCEEEECSTTS--SHHHHHHHHHHHHCCEEEEHHH
T ss_pred CCeEEEEeCCCC--CHHHHHHHHHHHhCCeEEEHHH
Confidence 357999999994 6889999999999988776653
No 107
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=62.41 E-value=4.2 Score=43.33 Aligned_cols=39 Identities=33% Similarity=0.378 Sum_probs=34.5
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
.+.|+|+||+| --.-.||++||+.|+..++-.|+..+|=
T Consensus 10 ~~~i~i~Gptg--sGKt~la~~La~~~~~~iis~Ds~qvY~ 48 (316)
T 3foz_A 10 PKAIFLMGPTA--SGKTALAIELRKILPVELISVDSALIYK 48 (316)
T ss_dssp CEEEEEECCTT--SCHHHHHHHHHHHSCEEEEECCTTTTBT
T ss_pred CcEEEEECCCc--cCHHHHHHHHHHhCCCcEEecccccccc
Confidence 35789999998 4688899999999999999999998873
No 108
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=61.97 E-value=3.6 Score=35.86 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.7
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEccC
Q 004011 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (779)
Q Consensus 199 tV~VNGkkVgKg~kviL~nGDEIvfs~~ 226 (779)
.|.|||+.+.. ..+|+.||||.|-.+
T Consensus 69 ~v~VNg~~v~~--~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 69 NIAVNGRYVSW--DEELKDGDVVGVFPP 94 (98)
T ss_dssp EEEETTBCCCT--TCBCCTTCEEEEESC
T ss_pred EEEECCEECCC--CCCCCCCCEEEEECC
Confidence 48999999986 568999999998543
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=61.93 E-value=9.1 Score=35.08 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F 518 (779)
..-|+|.||+| .-..+|+|+||+.+
T Consensus 38 g~~~~l~G~~G--~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPG--VGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSS--SSHHHHHHHHHHHH
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHH
Confidence 56799999999 57889999999887
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=61.78 E-value=6.5 Score=35.62 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=26.2
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhc-----cCeEEEEeccC
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLL 529 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F-----~AkLLilDs~~ 529 (779)
.|||.||+| ....+||++||+.+ ...++.++...
T Consensus 40 ~~ll~G~~G--~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 40 HLLFSGPPG--TGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp CEEEECSTT--SSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred eEEEECCCC--CCHHHHHHHHHHHHhccccccceEEecccc
Confidence 499999999 67888999999875 45566666543
No 111
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=61.76 E-value=3.9 Score=35.75 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.0
Q ss_pred eEEECCeecC--CCceEEeeCCCEEEEcc
Q 004011 199 EVEVNGNVHP--KDSQVVLRGGDELVFSP 225 (779)
Q Consensus 199 tV~VNGkkVg--Kg~kviL~nGDEIvfs~ 225 (779)
.|+|||+.+. .+-...|+.||||+|-.
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 3899999875 45678999999999844
No 112
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=60.84 E-value=4.4 Score=40.23 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=30.6
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCC
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~ 531 (779)
-|+|+||+|| -.-+||++||+++++.++-.|....+
T Consensus 3 li~I~G~~GS--GKSTla~~La~~~~~~~i~~D~~~~~ 38 (253)
T 2ze6_A 3 LHLIYGPTCS--GKTDMAIQIAQETGWPVVALDRVQCC 38 (253)
T ss_dssp EEEEECCTTS--SHHHHHHHHHHHHCCCEEECCSGGGC
T ss_pred EEEEECCCCc--CHHHHHHHHHhcCCCeEEeccHHhcc
Confidence 4899999994 68899999999999998888876443
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=60.44 E-value=4.2 Score=37.17 Aligned_cols=32 Identities=41% Similarity=0.454 Sum_probs=26.5
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+.|+|.||+|| -.-+|+|+||+.+++.++=.|
T Consensus 5 ~~i~i~G~~Gs--GKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 5 KNIVFIGFMGS--GKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CCEEEECCTTS--CHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEEcCCCC--CHHHHHHHHHHHcCCCEEccc
Confidence 36999999994 678899999999998765443
No 114
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=60.39 E-value=2.5 Score=35.53 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.0
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEccC
Q 004011 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (779)
Q Consensus 199 tV~VNGkkVgKg~kviL~nGDEIvfs~~ 226 (779)
.|.|||+.+.+. ..|+.||+|.|-.+
T Consensus 48 ~VavNg~~v~~~--~~L~dGD~V~i~pp 73 (77)
T 1rws_A 48 IAKVNGKVVLED--DEVKDGDFVEVIPV 73 (77)
T ss_dssp CEEETTEEECSS--SCCCSSCCCBCSCC
T ss_pred EEEECCEECCCC--CCcCCCCEEEEEcc
Confidence 489999999986 78999999988543
No 115
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=58.78 E-value=5.3 Score=40.06 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=35.6
Q ss_pred ccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccC
Q 004011 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (779)
Q Consensus 450 ~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~A 520 (779)
..+|++|. -.++.+..|..+.... ..+-|||.||+| .-..+|||+||+.++-
T Consensus 20 ~~~f~~i~--G~~~~~~~l~~~~~~~---------------~~~~vLl~G~~G--tGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIV--GQEDMKLALLLTAVDP---------------GIGGVLVFGDRG--TGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSC--SCHHHHHHHHHHHHCG---------------GGCCEEEECCGG--GCTTHHHHHHHHHSCC
T ss_pred CCCchhcc--ChHHHHHHHHHHhhCC---------------CCceEEEECCCC--ccHHHHHHHHHHhCcc
Confidence 35788753 3456666655444321 112399999999 5788999999999874
No 116
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=58.00 E-value=7 Score=36.39 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCceEEECCeecCCCceEEeeCCCEEEEccCC
Q 004011 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 227 (779)
Q Consensus 196 sNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~ 227 (779)
.+|.|+|||+.+ |. ...|+.||+|.+..+.
T Consensus 32 ~~G~V~VNG~~v-k~-s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 32 EGGKVHYNGQRS-KP-SKIVELNATLTLRQGN 61 (133)
T ss_dssp HTTCEEETTEEC-CT-TCBCCTTCEEEEEETT
T ss_pred HCCcEEECCEEc-CC-CCEeCCCCEEEEEeCC
Confidence 357799999998 43 4567899999997654
No 117
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=56.90 E-value=6.6 Score=39.84 Aligned_cols=38 Identities=16% Similarity=0.409 Sum_probs=31.8
Q ss_pred CCEEEEEcchhhhccCChhhHHHHHHHhccCCCCEEEEeec
Q 004011 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSH 744 (779)
Q Consensus 704 ~PlILYiKDVEK~L~gs~e~y~~fq~mLeKLsG~VLIIGSq 744 (779)
.|-||||-|++.+ ..+..+.|.+.++..+.+++|||+.
T Consensus 189 ~~~vl~IDEi~~l---~~~~~~~L~~~le~~~~~~~ii~t~ 226 (368)
T 3uk6_A 189 IPGVLFIDEVHML---DIESFSFLNRALESDMAPVLIMATN 226 (368)
T ss_dssp CBCEEEEESGGGS---BHHHHHHHHHHTTCTTCCEEEEEES
T ss_pred cCceEEEhhcccc---ChHHHHHHHHHhhCcCCCeeeeecc
Confidence 3789999999985 3577778888899988899999886
No 118
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=56.82 E-value=6.3 Score=45.10 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=33.2
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEeccCCCC
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLPG 532 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilDs~~l~G 532 (779)
.|||.||+| .-..+||||||+.+ +.+++.+|.+.+..
T Consensus 523 ~~Ll~Gp~G--tGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTG--VGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTT--SSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCC--CCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 599999999 57999999999998 78899999988865
No 119
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=56.54 E-value=6 Score=36.97 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=26.5
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
..|+|.||+|| -.-+++|.||++++.+.+-+|
T Consensus 21 ~~I~l~G~~Gs--GKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGA--GKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCcEEehh
Confidence 36999999994 788999999999998765444
No 120
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=56.18 E-value=4.5 Score=40.75 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=32.5
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEeccCC
Q 004011 491 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 530 (779)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilDs~~l 530 (779)
..+-|||.||+| .-..+||+++|+++ +.+++.++...+
T Consensus 36 ~~~~lll~G~~G--tGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVG--TGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSS--SSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 346799999999 57899999999999 899999887655
No 121
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=55.54 E-value=5.8 Score=42.45 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=33.4
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
-|+|.||.| --.-.|+++||+.|+..++-.|+-.+|=
T Consensus 42 lIvI~GPTg--sGKTtLa~~LA~~l~~eiIs~Ds~qvYr 78 (339)
T 3a8t_A 42 LLVLMGATG--TGKSRLSIDLAAHFPLEVINSDKMQVYK 78 (339)
T ss_dssp EEEEECSTT--SSHHHHHHHHHTTSCEEEEECCSSTTBS
T ss_pred eEEEECCCC--CCHHHHHHHHHHHCCCcEEccccccccc
Confidence 699999999 4788899999999999999999998863
No 122
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=55.04 E-value=5.6 Score=38.99 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=29.1
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhc-----cCeEEEEeccCCCC
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLLLPG 532 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F-----~AkLLilDs~~l~G 532 (779)
.+||.||+| ....+||++||+.+ +..++-++..+..|
T Consensus 40 ~~ll~G~~G--~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 40 HLLFSGPPG--TGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp CEEEESSSS--SSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred eEEEECcCC--cCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 399999999 67889999999986 55677777666544
No 123
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=52.96 E-value=2.8 Score=34.10 Aligned_cols=27 Identities=19% Similarity=0.575 Sum_probs=22.2
Q ss_pred eEEECCeecCCCc--eEEeeCCCEEEEcc
Q 004011 199 EVEVNGNVHPKDS--QVVLRGGDELVFSP 225 (779)
Q Consensus 199 tV~VNGkkVgKg~--kviL~nGDEIvfs~ 225 (779)
.|.|||+.+.+.. ...|+.||+|.|-+
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 4899999999853 47899999998744
No 124
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=52.30 E-value=7.2 Score=35.04 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.7
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+.|+|.|++|| -.-+++|.||+.++++++-.|
T Consensus 3 ~~I~l~G~~Gs--GKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGC--GMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHhCCcEEccc
Confidence 47999999994 678899999999998865444
No 125
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=51.92 E-value=6.6 Score=37.03 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=25.8
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+|+|.||+|| -.-++++.||+++++..+-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGA--GKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCcEEeHH
Confidence 5999999995 678999999999987765443
No 126
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=51.74 E-value=5.4 Score=35.03 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=22.6
Q ss_pred eEEECCeecCCCc--eEEeeCCCEEEEcc
Q 004011 199 EVEVNGNVHPKDS--QVVLRGGDELVFSP 225 (779)
Q Consensus 199 tV~VNGkkVgKg~--kviL~nGDEIvfs~ 225 (779)
.|.|||+.|.+.. ...|+.||+|.|-.
T Consensus 54 aVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 54 IVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 4799999999864 46899999998844
No 127
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=51.44 E-value=6.6 Score=36.93 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.9
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+|+|.||+|| -.-++++.||+.+++..+-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGA--GKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCcEeeHH
Confidence 6999999995 678999999999998765443
No 128
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=51.05 E-value=7 Score=36.72 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=28.7
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
...|+|.||+|+ -.-+|+|+||+.++..++-.|.
T Consensus 25 ~~~i~l~G~~Gs--GKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLTGYMGA--GKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp CCEEEEECCTTS--CHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCEEEEEcCCCC--CHHHHHHHHHHHcCCCEEcchH
Confidence 358999999994 7889999999999998776554
No 129
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=50.62 E-value=6.8 Score=41.84 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=33.0
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~ 531 (779)
+-|+++||+| --.-.||++||+.|+..++-.|+..+|
T Consensus 4 ~~i~i~Gptg--sGKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 4 KLVAIVGPTA--VGKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp EEEEEECCTT--SCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred cEEEEECCCc--CCHHHHHHHHHHhCccceeecCcccce
Confidence 4589999998 468889999999999999999998776
No 130
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.99 E-value=12 Score=40.67 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=29.7
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
+.|||.||+| .-..+||++||+.++.++.-+..
T Consensus 51 ~~vLL~GppG--tGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 51 HSMILWGPPG--TGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp CEEEEECSTT--SSHHHHHHHHHHHTTCEEEEEET
T ss_pred cEEEEECCCC--CcHHHHHHHHHHHhCCCeEEEEe
Confidence 5799999999 57899999999999999888874
No 131
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=47.98 E-value=5.7 Score=36.26 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.1
Q ss_pred EEECCeecC--CCceEEeeCCCEEEEcc
Q 004011 200 VEVNGNVHP--KDSQVVLRGGDELVFSP 225 (779)
Q Consensus 200 V~VNGkkVg--Kg~kviL~nGDEIvfs~ 225 (779)
|+|||+-+. .|-...|+.||||+|-.
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 899999765 57889999999999843
No 132
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=47.86 E-value=8 Score=41.99 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=27.6
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc----------cCeEEEEecc
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHF----------SARLLIVDSL 528 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F----------~AkLLilDs~ 528 (779)
+.+||.||+| .-..+||++||+.+ +.+++.+|..
T Consensus 202 ~~~LL~G~pG--~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 202 NNPVLIGEPG--VGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp CEEEEESCTT--TTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred CCeEEECCCC--CCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 4589999999 68999999999997 8888888876
No 133
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=47.84 E-value=8.3 Score=34.55 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=26.1
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+|+|.|++|| -.-+++|.||++++.+++-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCS--GKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTS--CHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCC--CHHHHHHHHHHHhCCCEEECc
Confidence 6999999994 678899999999998866444
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=47.74 E-value=15 Score=36.85 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---------cCeEEEEeccCC
Q 004011 491 MCPRILLSGPAGSEIYQETLAKALAKHF---------SARLLIVDSLLL 530 (779)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~F---------~AkLLilDs~~l 530 (779)
..+.|||+||+| .-..+||+++++.+ +...+-++....
T Consensus 43 ~~~~vll~G~~G--~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 43 KPSNALLYGLTG--TGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCEEECBCTT--SSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCcEEEECCCC--CCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 457899999999 68899999999988 788888886543
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=47.73 E-value=7.4 Score=35.49 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=26.5
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.-|+|.||+| --.-+++|+||++++...+-.|
T Consensus 6 ~~I~l~G~~G--sGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 6 ALIIVTGHPA--TGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp EEEEEEESTT--SSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHcCCeEecHH
Confidence 4699999999 4688899999999998765544
No 136
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=47.25 E-value=12 Score=35.05 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.7
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
-..|+|.||+|+ -.-+|+|.||+.+|+.++-.|
T Consensus 18 ~~~I~l~G~~Gs--GKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGS--GKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTS--CHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCC--CHHHHHHHHHHHhCCEEEeCC
Confidence 457999999994 688999999999987655434
No 137
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=47.07 E-value=9.8 Score=40.64 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=32.9
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
+-|+|+||+|| -.-+||++||+.|++.++-.|+..+|-
T Consensus 8 ~lI~I~GptgS--GKTtla~~La~~l~~~iis~Ds~qvYr 45 (340)
T 3d3q_A 8 FLIVIVGPTAS--GKTELSIEVAKKFNGEIISGDSMQVYQ 45 (340)
T ss_dssp EEEEEECSTTS--SHHHHHHHHHHHTTEEEEECCSSTTBT
T ss_pred ceEEEECCCcC--cHHHHHHHHHHHcCCceeccccccccc
Confidence 46999999995 588999999999999999999886663
No 138
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=47.00 E-value=11 Score=33.54 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.8
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.|+|.||+|+ -.-+++|+||+.++..++-.|
T Consensus 3 ~i~l~G~~Gs--GKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCC--FKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSS--SHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCeeecCc
Confidence 5899999994 688999999999998765444
No 139
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=46.82 E-value=19 Score=36.26 Aligned_cols=56 Identities=23% Similarity=0.384 Sum_probs=35.0
Q ss_pred Cceeee-cceEEEecccccceeecCCCcccceeEEEEEecCCCceEEEEEecCCceEEECCeecCCCceEEeeCCCEE
Q 004011 145 SHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (779)
Q Consensus 145 P~v~I~-~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~e~gg~~va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEI 221 (779)
..+.+. ...||||....||+.|.+. ..+-.|.. -+. |...|||..+.+ +|++|+.+
T Consensus 13 ~~~~L~~~~~~tiG~~~~~~itl~~~---~~~i~l~~-------------~~~-~~~~v~~~~l~~----~l~~g~~~ 69 (238)
T 1wv3_A 13 KMLNLRDGKTYTISEDERADITLKSL---GEVIHLEQ-------------NNQ-GTWQANHTSINK----VLVRKGDL 69 (238)
T ss_dssp EEEECCTTCCEEEESCTTSSEECTTC---CCCEEEEE-------------CTT-SCEEETTEECSS----EEEEECSS
T ss_pred EEEecCCCcEEEECCCccceEEecCC---CccEEEEE-------------ccC-CeEEECCEEeeh----hccCCcee
Confidence 344454 6889999999999999765 12222222 111 344567777776 36777766
No 140
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.45 E-value=11 Score=43.97 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=33.1
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEeccCCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLPG 532 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilDs~~l~G 532 (779)
..|||.||+| .-..+||||||+.+ +.+++.+|...+..
T Consensus 589 ~~vLl~Gp~G--tGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 589 GSFLFLGPTG--VGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp EEEEEBSCSS--SSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 3689999999 57899999999999 88999999877643
No 141
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=45.94 E-value=9.1 Score=35.06 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=25.9
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
..|+|.||+|| -.-+++|.||++++...+-.|
T Consensus 13 ~~I~l~G~~Gs--GKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGS--GKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCC--CHHHHHHHHHHHhCCeEEcHH
Confidence 57999999994 678899999999996654433
No 142
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=45.78 E-value=11 Score=36.26 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=27.3
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
...|+|.||+|| -.-+++|+||+++++..+-.|
T Consensus 16 ~~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLLGPPGA--GKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCEEEEECCTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCC--CHHHHHHHHHHHhCCceecHH
Confidence 357999999995 688999999999998765544
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=45.71 E-value=15 Score=37.12 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=31.6
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc-----------cCeEEEEeccCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF-----------SARLLIVDSLLL 530 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F-----------~AkLLilDs~~l 530 (779)
.+-|||+||+| .-..+||+++|+.+ +..++.++...+
T Consensus 45 ~~~vll~G~~G--~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 45 KFSNLFLGLTG--TGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp CCEEEEEECTT--SSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCcEEEECCCC--CCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 46899999999 68899999999987 889999986544
No 144
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=45.67 E-value=7.6 Score=35.33 Aligned_cols=26 Identities=31% Similarity=0.311 Sum_probs=22.3
Q ss_pred EEECCeecC--CCceEEeeCCCEEEEcc
Q 004011 200 VEVNGNVHP--KDSQVVLRGGDELVFSP 225 (779)
Q Consensus 200 V~VNGkkVg--Kg~kviL~nGDEIvfs~ 225 (779)
|+|||.-+. .|-.-.|+.||+|+|-+
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 799999886 67789999999999833
No 145
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=44.74 E-value=15 Score=37.46 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=32.2
Q ss_pred CCCCceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEeccCC
Q 004011 490 TMCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 530 (779)
Q Consensus 490 s~s~rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilDs~~l 530 (779)
.....|||.||+| .-.++||+||+++. +.+++.++...+
T Consensus 23 ~~~~~vLi~Ge~G--tGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSG--TGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTT--SCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCC--chHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 3456799999999 57999999999965 678888887766
No 146
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=44.50 E-value=10 Score=34.72 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=27.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
...|.|.||+|| -.-+++|.||++++.+.+-.|
T Consensus 9 ~~~I~l~G~~Gs--GKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGS--GKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHHhCCeEEcHH
Confidence 357999999994 688999999999998755444
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.33 E-value=12 Score=36.79 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.5
Q ss_pred eeecCCCCchHHHHHHHHHHHhhc-----cCeEEEEeccC
Q 004011 495 ILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLL 529 (779)
Q Consensus 495 ILLSGPaGsEiYQE~LaKALA~~F-----~AkLLilDs~~ 529 (779)
+||.||+| ....+||+++|+.+ +..++-+|..+
T Consensus 45 ~ll~G~~G--~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 45 MIISGMPG--IGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp EEEECSTT--SSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred EEEECcCC--CCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 99999999 68899999999985 45566666543
No 148
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=44.05 E-value=89 Score=28.29 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.4
Q ss_pred ceeeeccCCCCCCCCCC------CCCCCCCcceecccccccCC
Q 004011 643 KIGVRFDRSIPEGNNLG------GFCEDDHGFFCTASSLRLDS 679 (779)
Q Consensus 643 KVgVrFDk~i~dg~Dlg------~~ce~~~gffc~a~~lr~Ds 679 (779)
=|||.+|.|. .-||.. =.|.+.||.||....++...
T Consensus 53 wvGVElDep~-GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~ 94 (100)
T 2cow_A 53 WVGVELDLPS-GKNDGSIGGKQYFRCNPGYGLLVRPSRVRRAT 94 (100)
T ss_dssp EEEEECSSSC-CSCSSEETTEECCCSCTTCCEEECGGGCEECC
T ss_pred EEEEEeCCCC-CcCCCEECCEEeeecCCCeEEEecHHHeeECC
Confidence 5899999984 444433 35999999999887666553
No 149
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=44.03 E-value=9.2 Score=41.25 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=32.0
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc-----cCeEEEEeccCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLLL 530 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F-----~AkLLilDs~~l 530 (779)
.+-+||.||+| .-..+||+|+|+++ +.+++.++...|
T Consensus 130 ~~~lll~Gp~G--~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVG--LGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSS--SSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 46799999999 68999999999998 888888887655
No 150
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=44.01 E-value=9.1 Score=36.27 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=25.8
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+|+|.||+|| -.-+++|.||++++...+-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~~g~~~i~~d 32 (214)
T 1e4v_A 2 RIILLGAPVA--GKGTQAQFIMEKYGIPQISTG 32 (214)
T ss_dssp EEEEEESTTS--SHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCeEEeHH
Confidence 6999999994 678999999999987765553
No 151
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.88 E-value=11 Score=34.16 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=26.7
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+-|+|.|++|| -.-+++|.||+++|.+++-.|
T Consensus 8 ~~i~l~G~~Gs--GKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGS--GKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHhCCCEEECh
Confidence 56999999994 678899999999999876444
No 152
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.49 E-value=18 Score=36.14 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=27.1
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhcc------CeEEEEeccCC
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFS------ARLLIVDSLLL 530 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~------AkLLilDs~~l 530 (779)
.+||.||+| ....+||++||+.++ ..++-++..+.
T Consensus 60 ~~ll~G~~G--~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 60 HMLFYGPPG--TGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp CEEEECSTT--SSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred EEEEECCCC--CCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 399999999 688999999999864 45666665543
No 153
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=43.32 E-value=10 Score=36.64 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=23.3
Q ss_pred eEEECCeecCC--CceEEeeCCCEEEEccC
Q 004011 199 EVEVNGNVHPK--DSQVVLRGGDELVFSPS 226 (779)
Q Consensus 199 tV~VNGkkVgK--g~kviL~nGDEIvfs~~ 226 (779)
.|.|||+.+.+ +....|+.||||.|-.+
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~Pp 83 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEECS
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEECc
Confidence 48999999987 34678999999999664
No 154
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=42.72 E-value=13 Score=35.23 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=26.7
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
..|+|.||+|| -.-+++|.||++++...+-.|
T Consensus 5 ~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 36 (220)
T 1aky_A 5 IRMVLIGPPGA--GKGTQAPNLQERFHAAHLATG 36 (220)
T ss_dssp CEEEEECCTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHcCceEEehh
Confidence 57999999995 678999999999998765543
No 155
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=42.64 E-value=11 Score=41.38 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=32.9
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~G 532 (779)
+-|.++||+| .-.-.|+++||+.|+..++-.|+-.+|-
T Consensus 3 ~~i~i~Gptg--sGKttla~~La~~~~~~iis~Ds~QvYr 40 (409)
T 3eph_A 3 KVIVIAGTTG--VGKSQLSIQLAQKFNGEVINSDSMQVYK 40 (409)
T ss_dssp EEEEEEECSS--SSHHHHHHHHHHHHTEEEEECCTTTTBS
T ss_pred cEEEEECcch--hhHHHHHHHHHHHCCCeEeecCccceec
Confidence 3588999999 4678999999999999999999987763
No 156
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=42.51 E-value=11 Score=35.96 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=26.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
..|+|.||+|| -.-+++|.||++++...+-+|
T Consensus 8 ~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 8 LRAVIMGAPGS--GKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHHHSSSEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHcCCeEEech
Confidence 57999999994 688999999999998765443
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=42.30 E-value=17 Score=33.39 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=29.0
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEeccCC
Q 004011 491 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 530 (779)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilDs~~l 530 (779)
..+.++|.||.| .-.-+|+++|++++ |.+.+.++...+
T Consensus 35 ~g~~~~l~G~~G--~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEG--AGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSST--TTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 456799999999 46778999999988 655666665544
No 158
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=42.17 E-value=30 Score=34.22 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=44.2
Q ss_pred CCCCcceecccccccCCCCcchhhHHHHHHHHHHhhcccCcCCEEEEEcchhhhccCChhhHHHHHHHhccC-CCCEEEE
Q 004011 663 EDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENL-PSNVVVI 741 (779)
Q Consensus 663 e~~~gffc~a~~lr~Ds~~~~ddeKLlIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs~e~y~~fq~mLeKL-sG~VLII 741 (779)
+...|+-|++ ...-+++.||+ +..-....||||.+.|.|++-. --+.-...+++++++ ||++.+|
T Consensus 34 dtvygL~~da------------~n~~Av~rl~~-~K~R~~~kPl~v~v~~~~~~~~-~~~~~~~~~~ll~~~wPgp~T~i 99 (208)
T 1jcu_A 34 DTIYGLGVNA------------LDEDAVRRLFR-VKGRSPHKPVSICVSCVDEIPR-FSRPSGDAMELMERILPGPYTVV 99 (208)
T ss_dssp SSSCEEEEET------------TSHHHHHHHHH-HCCSCTTSCCEEECSCTTTSTT-TEECCHHHHHHHHHSCSSSEEEE
T ss_pred CCEEEEEEeC------------CCHHHHHHHHH-HhCCCCCCCEEEEeCCHHHHHH-HhcCCHHHHHHHHhcCCCCeEEE
Confidence 3345667777 35678999998 6666678899999999876321 111222344556664 8998887
Q ss_pred ee
Q 004011 742 GS 743 (779)
Q Consensus 742 GS 743 (779)
--
T Consensus 100 l~ 101 (208)
T 1jcu_A 100 LE 101 (208)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 159
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=41.86 E-value=12 Score=33.95 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=22.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcc
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFS 519 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~ 519 (779)
..|+|.||+|+ -.-+++|+||++++
T Consensus 4 ~~I~i~G~~Gs--GKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGV--GSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTS--CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHHH
Confidence 57999999994 67889999999998
No 160
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=41.69 E-value=14 Score=31.60 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.4
Q ss_pred eEEECCeecCCCce--EEeeCCCEEEEcc
Q 004011 199 EVEVNGNVHPKDSQ--VVLRGGDELVFSP 225 (779)
Q Consensus 199 tV~VNGkkVgKg~k--viL~nGDEIvfs~ 225 (779)
.|.|||+.|.|... ..|+.||.|-+-+
T Consensus 36 AVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 58999999999855 8999999998754
No 161
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=40.52 E-value=12 Score=35.79 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.9
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
..|+|.||+|| -.-+++|.||++++.+.+-.|
T Consensus 6 ~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGS--GKGTQCEFIKKEYGLAHLSTG 37 (217)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCceEEehh
Confidence 47999999995 678999999999998766554
No 162
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=40.32 E-value=10 Score=34.05 Aligned_cols=31 Identities=26% Similarity=0.151 Sum_probs=23.9
Q ss_pred ceeecCCCCchHHHHHHHHHHHh-hccCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAK-HFSARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~-~F~AkLLilD 526 (779)
-|+|.||+|| -.-+++|+||+ .+++..+-.|
T Consensus 4 ~I~i~G~~Gs--GKST~a~~L~~~~~~~~~i~~d 35 (181)
T 1ly1_A 4 IILTIGCPGS--GKSTWAREFIAKNPGFYNINRD 35 (181)
T ss_dssp EEEEECCTTS--SHHHHHHHHHHHSTTEEEECHH
T ss_pred EEEEecCCCC--CHHHHHHHHHhhcCCcEEecHH
Confidence 5999999995 68889999999 6765544333
No 163
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=39.98 E-value=33 Score=33.24 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhhcccCcCCEEEEEcchhhhcc--C---ChhhHHHHHHHhccCCCCEEEEee
Q 004011 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT--G---NNDAYGALKSKLENLPSNVVVIGS 743 (779)
Q Consensus 686 eKLlIqsLyEVL~S~S~t~PlILYiKDVEK~L~--g---s~e~y~~fq~mLeKLsG~VLIIGS 743 (779)
..-+++.||+ +..-....||||.+.|.|++-. . -++. .++.++.-.||++.+|--
T Consensus 39 ~~~av~rl~~-~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pgP~tlil~ 98 (188)
T 1hru_A 39 SETAVMRLLE-LKQRPVDKGLILIAANYEQLKPYIDDTMLTDV--QRETIFSRWPGPVTFVFP 98 (188)
T ss_dssp CHHHHHHHHH-HHTCCGGGCCEEEESSHHHHGGGCCCTTCCHH--HHHHHHTTCSSSEEEEEE
T ss_pred CHHHHHHHHH-HcCCCCCCCEEEEeCCHHHHHHHHhhcCCCHH--HHHHHHhCCCCCEEEEEE
Confidence 5678999998 5555667899999999765322 2 1222 134456667999998753
No 164
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=39.90 E-value=44 Score=32.89 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHHHHHhhcccCcCCEEEEEcchhhhccC-ChhhHHHHHHHhccCCC-CEEEEeec
Q 004011 690 INELFEVALNESKSSPLIVFVKDIEKSLTG-NNDAYGALKSKLENLPS-NVVVIGSH 744 (779)
Q Consensus 690 IqsLyEVL~S~S~t~PlILYiKDVEK~L~g-s~e~y~~fq~mLeKLsG-~VLIIGSq 744 (779)
++.+++.|....+ .|++|+|-|+..+... +.++...++..++..+. .||++|+.
T Consensus 124 ~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCc
Confidence 4556666665554 5999999999985542 57777888888877643 45556654
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=39.58 E-value=14 Score=32.47 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=25.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.-|+|.||+|| -.-+++|+| +.+|...+-+|
T Consensus 2 ~~I~l~G~~Gs--GKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 2 KVILITGMPGS--GKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp CEEEEECCTTS--CHHHHHHHH-HHTTCEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHH-HHCCCcEEEHh
Confidence 35899999995 588899999 99998866543
No 166
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=39.56 E-value=23 Score=35.74 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=29.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc----cCeEEEEeccCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHF----SARLLIVDSLLL 530 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F----~AkLLilDs~~l 530 (779)
+.|||.||+| .-..+|++++++.+ +...+.++....
T Consensus 45 ~~~li~G~~G--~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 45 PRATLLGRPG--TGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp CEEEEECCTT--SSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CeEEEECCCC--CCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 4799999999 68999999999998 667788885443
No 167
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=39.52 E-value=41 Score=29.71 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=36.5
Q ss_pred HHHHHHHhhcccCcCCEEEEEcchhhhcc------CChhhHHHHHHHhccCCCCEEEEeecccc
Q 004011 690 INELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQL 747 (779)
Q Consensus 690 IqsLyEVL~S~S~t~PlILYiKDVEK~L~------gs~e~y~~fq~mLeKLsG~VLIIGSq~~~ 747 (779)
++.+++.+... ..|.||+|.|++.+.. ...++.+.|...++. ++|+|||.-+..
T Consensus 103 ~~~~~~~~~~~--~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~ 162 (187)
T 2p65_A 103 LKSILKEVQDA--EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVS 162 (187)
T ss_dssp HHHHHHHHHHT--TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHH
T ss_pred HHHHHHHHHhc--CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHH
Confidence 44455544431 4789999999999752 236777788888875 667777766543
No 168
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=39.48 E-value=16 Score=35.65 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=31.1
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCe--------EEEEeccCCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSAR--------LLIVDSLLLPG 532 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~Ak--------LLilDs~~l~G 532 (779)
..|.|.||+|| -.-++|+.||+.|+++ ++++|.-+|+-
T Consensus 23 ~iI~I~G~~GS--GKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTAS--GKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTS--SHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCC--CHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 36999999994 6778999999999986 56788777764
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=39.42 E-value=22 Score=34.03 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcccCcCCEEEEEcchhhhccCC---------hhhHHHHHHH---hccC--CCCEEEEeeccccC
Q 004011 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGN---------NDAYGALKSK---LENL--PSNVVVIGSHTQLD 748 (779)
Q Consensus 689 lIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs---------~e~y~~fq~m---LeKL--sG~VLIIGSq~~~D 748 (779)
.+..+|+.+.. ..|-||||.|++.+.... .+....+..+ ++.+ +.+|+|||.-+..+
T Consensus 86 ~~~~~~~~a~~---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 86 RVRSLFKEARA---RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHHHHHH---TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHHHHHHh---cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 34566666554 579999999999975432 2222223333 3332 35899999877654
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=39.19 E-value=47 Score=34.52 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcccCcCCEEEEEcchhhhccCC--------hhhHHHHHHHhccC---CCCEEEEeeccccC
Q 004011 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL---PSNVVVIGSHTQLD 748 (779)
Q Consensus 688 LlIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs--------~e~y~~fq~mLeKL---sG~VLIIGSq~~~D 748 (779)
-.+..+|+.+.. ..|-||||-|++.+.... .+..+.|-..|+.+ ..+|+|||.-+..+
T Consensus 130 ~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 130 KLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 356777777654 789999999999865421 22333344444433 56899999877653
No 171
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=39.11 E-value=15 Score=34.12 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhh-ccCeEEEEe
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKH-FSARLLIVD 526 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~-F~AkLLilD 526 (779)
...|+|.||+|| -.-+++|+||+. +|...+-+|
T Consensus 10 ~~~I~l~G~~Gs--GKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGT--GKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTS--SHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHhcCCCEEeeHH
Confidence 457999999994 688999999999 787665544
No 172
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=38.62 E-value=15 Score=33.30 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=25.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
..|+|.||+|| -.-+++|.||++++...+-.|
T Consensus 4 ~~I~l~G~~Gs--GKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGA--GKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp EEEEEECCTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCeEEeHH
Confidence 36999999994 678899999999998754333
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=38.54 E-value=23 Score=36.37 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=28.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~ 529 (779)
..++|.||+| .-.-+|+|+||+.+++++.......
T Consensus 52 ~~~ll~Gp~G--~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 52 DHVLLAGPPG--LGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp CCEEEESSTT--SSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEechH
Confidence 5699999999 6899999999999998876554433
No 174
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.39 E-value=15 Score=42.76 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.7
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc----------cCeEEEEeccCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHF----------SARLLIVDSLLLP 531 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F----------~AkLLilDs~~l~ 531 (779)
+.|||.||+| .-..+||++||+.+ +.+++.+|...+.
T Consensus 192 ~~vlL~G~pG--~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~ 238 (854)
T 1qvr_A 192 NNPVLIGEPG--VGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL 238 (854)
T ss_dssp CCCEEEECTT--SCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----
T ss_pred CceEEEcCCC--CCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh
Confidence 4589999999 57889999999998 8999999987774
No 175
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=38.33 E-value=15 Score=37.10 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=28.4
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
...||+.||+| .-..++|.|||+++.-+.+.++.
T Consensus 58 kn~ili~GPPG--tGKTt~a~ala~~l~g~i~~fan 91 (212)
T 1tue_A 58 KNCLVFCGPAN--TGKSYFGMSFIHFIQGAVISFVN 91 (212)
T ss_dssp CSEEEEESCGG--GCHHHHHHHHHHHHTCEECCCCC
T ss_pred ccEEEEECCCC--CCHHHHHHHHHHHhCCCeeeEEe
Confidence 34699999998 57899999999999888766653
No 176
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=38.06 E-value=9.3 Score=32.01 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=20.1
Q ss_pred CCceEEECCeecCCCceEEeeCCCEEEE
Q 004011 196 GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (779)
Q Consensus 196 sNGtV~VNGkkVgKg~kviL~nGDEIvf 223 (779)
..|.|+|||+.+.+.. ..+..||+|.+
T Consensus 44 ~~G~V~VNG~~v~~~~-~~v~~gd~I~v 70 (79)
T 1p9k_A 44 AEGQVKVDGAVETRKR-CKIVAGQTVSF 70 (79)
T ss_dssp HHHHHEETTBCCCCSS-CCCCSSEEEEE
T ss_pred HCCEEEECCEEecCCC-CCCCCCCEEEE
Confidence 3577999999986543 33578998877
No 177
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=38.02 E-value=20 Score=39.75 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccC
Q 004011 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (779)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~ 529 (779)
..+-|||.||+| .-..+|||+||+.++.++.-++...
T Consensus 107 ~g~~vll~Gp~G--tGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPG--VGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSS--SSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEecc
Confidence 466899999999 5799999999999999988887544
No 178
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=37.50 E-value=64 Score=32.67 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhcccCcCCEEEEEcchhhhccCC--------hhhHHHHHHHhcc---CCCCEEEEeeccccC
Q 004011 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLEN---LPSNVVVIGSHTQLD 748 (779)
Q Consensus 687 KLlIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs--------~e~y~~fq~mLeK---LsG~VLIIGSq~~~D 748 (779)
.-.+..+|+.+.. ..|-||||-|++.+.... .+..+.|-..|+. -..+|+|||.-+..+
T Consensus 96 ~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 96 EKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp HHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred HHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 3456777877765 789999999999976532 2233334444443 457899999877543
No 179
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=37.46 E-value=14 Score=36.37 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=30.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l 530 (779)
..|+|.||+|| -.-+|+|+||+.++....++|.-.|
T Consensus 33 ~~i~l~G~~Gs--GKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGA--GKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGG--TTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred eEEEEECCCCC--CHHHHHHHHHHhcCCCcEEEecHHH
Confidence 47999999994 6788999999999877777887655
No 180
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=37.22 E-value=16 Score=33.95 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.3
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
..|+|.||+|| -.-+++|.||++++...+-.|
T Consensus 16 ~~I~l~G~~Gs--GKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGA--GKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTS--SHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHcCceEEeHH
Confidence 46999999994 688999999999998655444
No 181
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=37.22 E-value=15 Score=36.01 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=26.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.+|+|.||+|| -.-++++.||++++...+-.|
T Consensus 30 ~~I~l~G~~Gs--GKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 30 GRYIFLGAPGS--GKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp EEEEEECCTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHhCCeEEecH
Confidence 47999999995 578999999999987655443
No 182
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=36.91 E-value=14 Score=37.44 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=26.6
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
.-|+|+||+|+ -.-+|+|+|++.++...+.+|.
T Consensus 34 ~livl~G~sGs--GKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGS--GKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTS--CTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCCeEEEec
Confidence 46899999994 6778999999998655667765
No 183
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=36.36 E-value=16 Score=35.96 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=25.0
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhcc-----CeEEEEec
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFS-----ARLLIVDS 527 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~-----AkLLilDs 527 (779)
.+||.||+| ....+||++||+.+. ..++-++.
T Consensus 48 ~~ll~G~~G--~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 48 HLLFAGPPG--VGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp EEEEESCTT--SSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred eEEEECcCC--CCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 499999999 678999999999863 33555554
No 184
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=36.35 E-value=14 Score=33.62 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=25.1
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEE
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLil 525 (779)
..|+|.||+|| -.-+++|.||+.++...+-.
T Consensus 5 ~~I~l~G~~Gs--GKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGA--GKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTS--CHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCeEecH
Confidence 36999999994 68899999999998764433
No 185
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.11 E-value=14 Score=42.15 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHF 518 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F 518 (779)
+-|||.||+| .-..+||++||+.+
T Consensus 202 ~~vLL~G~pG--tGKT~la~~la~~l 225 (758)
T 3pxi_A 202 NNPVLIGEPG--VGKTAIAEGLAQQI 225 (758)
T ss_dssp CEEEEESCTT--TTTHHHHHHHHHHH
T ss_pred CCeEEECCCC--CCHHHHHHHHHHHH
Confidence 3499999999 57899999999996
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=36.00 E-value=70 Score=32.77 Aligned_cols=57 Identities=16% Similarity=0.365 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcccCcCCEEEEEcchhhhccCCh--------hhHHHHHHHhccC---CCCEEEEeeccccC
Q 004011 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGNN--------DAYGALKSKLENL---PSNVVVIGSHTQLD 748 (779)
Q Consensus 689 lIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs~--------e~y~~fq~mLeKL---sG~VLIIGSq~~~D 748 (779)
.+..+|+.+.. ..|-||||.|++.+..... +..+.|-..++.+ .++|+|||.-+..+
T Consensus 93 ~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 93 LVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp HHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 56777777665 7899999999999754321 2223333344443 57899999877654
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=35.84 E-value=17 Score=37.31 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSA 520 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~A 520 (779)
.+.+||.||+| ....++|++||+.+..
T Consensus 24 ~~a~L~~G~~G--~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPG--MGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTT--SCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCC--chHHHHHHHHHHHHhC
Confidence 46799999998 6889999999998764
No 188
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=35.70 E-value=16 Score=37.78 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSA 520 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~A 520 (779)
-..|||.||+| .-.-+||+|||++++.
T Consensus 104 ~n~~~l~Gppg--tGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPAT--TGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCC--CCHHHHHHHHHhhhcc
Confidence 34699999998 5789999999998653
No 189
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.68 E-value=28 Score=34.74 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCCCceeecCCCCchHHHHHHHHHHHhhc------cCeEEEEecc
Q 004011 490 TMCPRILLSGPAGSEIYQETLAKALAKHF------SARLLIVDSL 528 (779)
Q Consensus 490 s~s~rILLSGPaGsEiYQE~LaKALA~~F------~AkLLilDs~ 528 (779)
...+.|||.||+| .-..+|++++++.+ +...+.++..
T Consensus 43 ~~~~~vli~G~~G--~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTG--TGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTT--SSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCC--CCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3456899999999 68899999999988 8888888854
No 190
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=35.63 E-value=16 Score=33.07 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=25.4
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEE
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLil 525 (779)
..|+|.||+|| -.-+++|.||++++...+-.
T Consensus 7 ~~I~l~G~~Gs--GKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGS--GKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTS--SHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHhCCeEeeH
Confidence 46999999994 67889999999999765443
No 191
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=35.61 E-value=18 Score=32.75 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=22.4
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEE
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLL 523 (779)
..|+|.|++| --.-+++|.||++++.+++
T Consensus 6 ~~I~l~G~~G--sGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFG--VGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC------CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCC--CCHHHHHHHHHHhcCCCEE
Confidence 4699999999 4677899999999999866
No 192
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=35.11 E-value=17 Score=33.12 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.5
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSA 520 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~A 520 (779)
+.|||.||+| .-..+|++++|+.++.
T Consensus 46 ~~~ll~G~~G--~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRG--VGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTT--SCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHhcC
Confidence 4699999999 6788999999998864
No 193
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=34.96 E-value=64 Score=29.20 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=35.4
Q ss_pred HHHHHHHhhcc-cCcCCEEEEEcchhhhccCChhhHHHHHHHhccCCCCEEEEeecc
Q 004011 690 INELFEVALNE-SKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (779)
Q Consensus 690 IqsLyEVL~S~-S~t~PlILYiKDVEK~L~gs~e~y~~fq~mLeKLsG~VLIIGSq~ 745 (779)
+..+++-+... ....|.||+|.|++.+ ..+..+.|.+.|+..+.+++||..-+
T Consensus 111 ~~~~~~~~~~~~~~~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 111 TRDLLDNVQYAPARGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp HHHHHHSCCCSCSSSSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred HHHHHHHhhhchhcCCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 34444444332 2456899999999985 35566778888888877766665543
No 194
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=34.54 E-value=22 Score=34.01 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=21.5
Q ss_pred CceEEECCeecCCCceEEeeCCCEEEEcc
Q 004011 197 KGEVEVNGNVHPKDSQVVLRGGDELVFSP 225 (779)
Q Consensus 197 NGtV~VNGkkVgKg~kviL~nGDEIvfs~ 225 (779)
.|.|.|||+.+.+. ...++.||+|.+.-
T Consensus 75 ~G~V~VNG~~v~~p-s~~V~~gD~I~V~~ 102 (159)
T 1c05_A 75 HGHILVDGSRVNIP-SYRVKPGQTIAVRE 102 (159)
T ss_dssp TTCEEETTEECCCS-SCBCCTTCEEEECG
T ss_pred CCCEEECCEEeCcC-CcEeCCCCEEEEeC
Confidence 46799999999764 44567899998844
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=34.50 E-value=52 Score=34.28 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhcccCcCCEEEEEcchhhhccCC--------hhhHHHHHHHhcc----CCCCEEEEeeccccC
Q 004011 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLEN----LPSNVVVIGSHTQLD 748 (779)
Q Consensus 688 LlIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs--------~e~y~~fq~mLeK----LsG~VLIIGSq~~~D 748 (779)
-.+..+|+.+.. ..|-||||-|++.++... .+....|-..|+. .+.+|+|||.-+..+
T Consensus 194 ~~~~~~~~~a~~---~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 194 KLVRALFAVARE---LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp HHHHHHHHHHHH---SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred HHHHHHHHHHHh---cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 346777877765 688999999999975532 2222233333332 356899999887644
No 196
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=34.26 E-value=25 Score=34.76 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=28.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhh---ccCeEEEEecc
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKH---FSARLLIVDSL 528 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~---F~AkLLilDs~ 528 (779)
.-|+|.|++|| -.-++|++||++ .|...+++|.-
T Consensus 5 ~lIvl~G~pGS--GKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 5 MLIILTGLPGV--GKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEEECCTTS--SHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEEcCCCC--CHHHHHHHHHHHHHhCCCEEEEECch
Confidence 36999999995 788899999998 78888877653
No 197
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=33.93 E-value=18 Score=34.74 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.4
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
.|+|.||+|| -.-++++.||++++...+-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~La~~lg~~~i~~d 32 (223)
T 2xb4_A 2 NILIFGPNGS--GKGTQGNLVKDKYSLAHIESG 32 (223)
T ss_dssp EEEEECCTTS--CHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCeEEchH
Confidence 5999999995 688999999999997655443
No 198
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=33.89 E-value=27 Score=31.33 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=26.0
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
...|.|.||+|+ -.-+|+|+||..++..+ +|.
T Consensus 4 ~~~i~l~G~~Gs--GKSTl~~~La~~l~~~~--id~ 35 (173)
T 1kag_A 4 KRNIFLVGPMGA--GKSTIGRQLAQQLNMEF--YDS 35 (173)
T ss_dssp CCCEEEECCTTS--CHHHHHHHHHHHTTCEE--EEH
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHhCCCE--Eec
Confidence 357999999994 67889999999999754 454
No 199
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=33.41 E-value=11 Score=31.67 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.2
Q ss_pred eEEECCeecCCCc--eEEeeCCCEEEEcc
Q 004011 199 EVEVNGNVHPKDS--QVVLRGGDELVFSP 225 (779)
Q Consensus 199 tV~VNGkkVgKg~--kviL~nGDEIvfs~ 225 (779)
.|.|||+.|.|.. ...|+.||.|-+-+
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 5899999999985 48999999998744
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=33.40 E-value=16 Score=34.64 Aligned_cols=29 Identities=14% Similarity=0.309 Sum_probs=24.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEE
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLL 523 (779)
..|+|.||+|+ -.-+++|.||++++...+
T Consensus 6 ~~I~l~G~~Gs--GKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPAS--GKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTS--SHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCcee
Confidence 57999999995 688999999999997543
No 201
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=32.69 E-value=19 Score=40.05 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.0
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSA 520 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~A 520 (779)
+.|||.||+| .-..+||||||+.++.
T Consensus 42 ~~VLL~GpPG--tGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 42 ESVFLLGPPG--IAKSLIARRLKFAFQN 67 (500)
T ss_dssp CEEEEECCSS--SSHHHHHHHGGGGBSS
T ss_pred CeeEeecCch--HHHHHHHHHHHHHHhh
Confidence 4799999999 5799999999999854
No 202
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=32.64 E-value=21 Score=35.87 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSA 520 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~A 520 (779)
+.+||+||+| ....+||+++|+.+..
T Consensus 39 ~~~ll~G~~G--~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRG--VGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTT--SSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 4689999999 5899999999998864
No 203
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=32.37 E-value=30 Score=31.32 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=26.5
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHF---SARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilD 526 (779)
.|.|.|++|| -.-+++|.||+++ |.+.+..|
T Consensus 2 ~I~l~G~~Gs--GKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGS--GKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTS--CHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999995 6889999999998 88877666
No 204
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=32.08 E-value=45 Score=37.80 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=46.4
Q ss_pred hHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHhcccCCCccccccccccccchhhHHHHHHhhhhccccCcccccccCCC
Q 004011 409 DEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDL 488 (779)
Q Consensus 409 ee~~e~~~~~~~~~~~~s~~~~r~~~fk~~~~~~Vvdg~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~L 488 (779)
||.++++++.++ ...+++.+++-. | =| .|..|.+|+-+.+---.+
T Consensus 191 ed~~~i~~l~~~---------~~~~~l~~sIap-I-~G--------------~e~vK~aLll~L~GG~~k---------- 235 (506)
T 3f8t_A 191 AELEEFRELADK---------DPLTTFARAIAP-L-PG--------------AEEVGKMLALQLFSCVGK---------- 235 (506)
T ss_dssp HHHHHHHHHHHS---------CHHHHHHHHHCC-S-TT--------------CHHHHHHHHHHHTTCCSS----------
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHhcc-c-CC--------------CHHHHHHHHHHHcCCccc----------
Confidence 456677777664 134666677666 3 33 466777777766643221
Q ss_pred CCCCCceeecCCCCchHHHHHHHHHH-Hhhc
Q 004011 489 PTMCPRILLSGPAGSEIYQETLAKAL-AKHF 518 (779)
Q Consensus 489 ss~s~rILLSGPaGsEiYQE~LaKAL-A~~F 518 (779)
....-.|||.|++|+ .++|||++ ++-.
T Consensus 236 ~rgdihVLL~G~PGt---KS~Lar~i~~~i~ 263 (506)
T 3f8t_A 236 NSERLHVLLAGYPVV---CSEILHHVLDHLA 263 (506)
T ss_dssp GGGCCCEEEESCHHH---HHHHHHHHHHHTC
T ss_pred cCCceeEEEECCCCh---HHHHHHHHHHHhC
Confidence 122336999999995 99999999 5543
No 205
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=31.76 E-value=18 Score=32.59 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=25.0
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCe---EEEEec
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSAR---LLIVDS 527 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~Ak---LLilDs 527 (779)
.|+|.||+|+ -.-+|+|+||++++.. +..+|.
T Consensus 3 ~I~i~G~~Gs--GKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGV--GKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTS--CHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHhcCceEEEEEC
Confidence 5999999994 6889999999998832 455564
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=31.48 E-value=33 Score=31.52 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=27.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc-cCeEEEEe
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF-SARLLIVD 526 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F-~AkLLilD 526 (779)
...|.|.||.|| -.-+++|.||+++ |.+.+.+|
T Consensus 4 ~~~I~l~G~~Gs--GKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKS--GKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTS--SHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCC--CHHHHHHHHHHHHCCCceEEEe
Confidence 457999999994 7889999999999 57766654
No 207
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.30 E-value=39 Score=33.92 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.9
Q ss_pred eeecCCCCchHHHHHHHHHHHhhc
Q 004011 495 ILLSGPAGSEIYQETLAKALAKHF 518 (779)
Q Consensus 495 ILLSGPaGsEiYQE~LaKALA~~F 518 (779)
+||.||+| ....+|+|+||+.+
T Consensus 39 ~ll~Gp~G--~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNG--TGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTT--SSHHHHHHTHHHHH
T ss_pred EEEECCCC--CCHHHHHHHHHHHH
Confidence 99999999 57899999999964
No 208
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=31.19 E-value=35 Score=33.58 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhcccCcCCEEEEEcchhhh---ccCChhhHHHHHHHhcc-CCCCEEEEeec
Q 004011 686 DKLAINELFEVALNESKSSPLIVFVKDIEKS---LTGNNDAYGALKSKLEN-LPSNVVVIGSH 744 (779)
Q Consensus 686 eKLlIqsLyEVL~S~S~t~PlILYiKDVEK~---L~gs~e~y~~fq~mLeK-LsG~VLIIGSq 744 (779)
.+-+++.||+ +..-....||||.+.|.|++ ..-+... ++++++ .||++.+|--.
T Consensus 46 n~~Av~rl~~-~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~----~~ll~~~~PGp~T~il~~ 103 (206)
T 1k7j_A 46 DKNAMERICR-IRQLPDGHNFTLMCRDLSELSTYSFVDNVA----FRLMKNNTPGNYTFILKG 103 (206)
T ss_dssp CHHHHHHHHH-HHTCCTTCCCEEECSSHHHHHHHBCCCHHH----HHHHHTSCSSSEEEEEEB
T ss_pred CHHHHHHHHH-HcCCCCCCCEEEEECCHHHHHHHhcCCHHH----HHHHHcCCCCCeEEEEEC
Confidence 5778999999 66666788999999997653 3223333 334444 48988888643
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=30.70 E-value=62 Score=34.79 Aligned_cols=57 Identities=16% Similarity=0.362 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcccCcCCEEEEEcchhhhccCC--------hhhHHHHHHHhccC---CCCEEEEeeccccC
Q 004011 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL---PSNVVVIGSHTQLD 748 (779)
Q Consensus 689 lIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs--------~e~y~~fq~mLeKL---sG~VLIIGSq~~~D 748 (779)
.+..+|+.+.. ..|-||||-|++.+.... .+..+.|-..|+.+ +++|+|||.-+..+
T Consensus 215 ~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 215 LVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp THHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 35667777654 789999999999975432 12222233333332 56899999877643
No 210
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=30.15 E-value=26 Score=32.22 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=26.0
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilD 526 (779)
+.|.|.||+|| -.-+++|+||+.+|..++=.|
T Consensus 3 ~~i~i~G~~Gs--GKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 3 GIVTIDGPSAS--GKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp SEEEEECSTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHhcCCceeccc
Confidence 47999999994 678899999999997665444
No 211
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=29.83 E-value=89 Score=30.36 Aligned_cols=58 Identities=21% Similarity=0.444 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcccCcCCEEEEEcchhhhccC--------ChhhHHHHHHHhcc-----CCCCEEEEeeccccC
Q 004011 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLEN-----LPSNVVVIGSHTQLD 748 (779)
Q Consensus 688 LlIqsLyEVL~S~S~t~PlILYiKDVEK~L~g--------s~e~y~~fq~mLeK-----LsG~VLIIGSq~~~D 748 (779)
-.+..+|+.+.. ..|-||||-|++.++.. ..+....|...|+. ..++|+|||.-+..+
T Consensus 97 ~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 97 SLVKDIFKLAKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp HHHHHHHHHHHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHHHHHHHHHHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 345666666554 68999999999997642 23333344444443 345899999876543
No 212
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=29.81 E-value=36 Score=31.24 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=25.7
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCe--EEEEe
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSAR--LLIVD 526 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~Ak--LLilD 526 (779)
..|+|.||+|| -.-+++|+||++++.. ++..+
T Consensus 5 ~~I~i~G~~Gs--GKsT~~~~L~~~l~~~g~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGS--GKSSQATLLKDWIELKRDVYLTE 38 (213)
T ss_dssp EEEEEECCTTS--SHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEcCCCC--CHHHHHHHHHHHHhhcCCEEEec
Confidence 46999999994 7889999999999873 54443
No 213
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=29.77 E-value=29 Score=35.73 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc------cCeEEEEec
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF------SARLLIVDS 527 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F------~AkLLilDs 527 (779)
.+.+||.||+| ....++|++||+.. ...++.+|.
T Consensus 18 ~~~~Lf~Gp~G--~GKtt~a~~la~~~~~~~~~~~d~~~l~~ 57 (305)
T 2gno_A 18 GISILINGEDL--SYPREVSLELPEYVEKFPPKASDVLEIDP 57 (305)
T ss_dssp SEEEEEECSSS--SHHHHHHHHHHHHHHTSCCCTTTEEEECC
T ss_pred CcEEEEECCCC--CCHHHHHHHHHHhCchhhccCCCEEEEcC
Confidence 36899999999 58899999999963 345666653
No 214
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=29.49 E-value=32 Score=31.39 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=24.2
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEE
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLL 523 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLL 523 (779)
.|.|.||+|+ -.-+|+|.||++++..++
T Consensus 2 ~I~i~G~~Gs--GKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGA--GKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTS--CHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCcc--CHHHHHHHHHHhcCCcEE
Confidence 5899999994 688999999999998654
No 215
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=29.48 E-value=55 Score=33.27 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcccCcCCEEEEEcchhhhccC---ChhhHHHHHHHhccCC-----CCEEEEe
Q 004011 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG---NNDAYGALKSKLENLP-----SNVVVIG 742 (779)
Q Consensus 689 lIqsLyEVL~S~S~t~PlILYiKDVEK~L~g---s~e~y~~fq~mLeKLs-----G~VLIIG 742 (779)
+++.|.+.|. ....|+||+|-|++.+... +.+....+...++.++ .+|.||+
T Consensus 125 ~~~~l~~~l~--~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~ 184 (412)
T 1w5s_A 125 ILKALVDNLY--VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLL 184 (412)
T ss_dssp HHHHHHHHHH--HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEE
T ss_pred HHHHHHHHHH--hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEE
Confidence 4566666665 2356999999999986543 4566555556777665 5765554
No 216
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=28.91 E-value=67 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCEEEEEcchhhhcc----CChhhHHHHHHHhccCCC-CEEEEeecc
Q 004011 704 SPLIVFVKDIEKSLT----GNNDAYGALKSKLENLPS-NVVVIGSHT 745 (779)
Q Consensus 704 ~PlILYiKDVEK~L~----gs~e~y~~fq~mLeKLsG-~VLIIGSq~ 745 (779)
+|++|+|-|++.+.. .+.++...++..++..+. .||++|+..
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~ 174 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEV 174 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcH
Confidence 499999999998654 367888889888887644 456666653
No 217
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=28.23 E-value=18 Score=36.41 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=35.3
Q ss_pred cCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCC
Q 004011 485 ASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (779)
Q Consensus 485 t~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~ 531 (779)
+.-+.--.+.|||.||+| .-.-.||.+||+.+. .|+-.|+..++
T Consensus 27 a~~v~~~g~~ilI~GpsG--sGKStLA~~La~~g~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 27 GVLVDIYGLGVLITGDSG--VGKSETALELVQRGH-RLIADDRVDVY 70 (205)
T ss_dssp SEEEEETTEEEEEECCCT--TTTHHHHHHHHTTTC-EEEESSEEEEE
T ss_pred EEEEEECCEEEEEECCCC--CCHHHHHHHHHHhCC-eEEecchhhee
Confidence 333333457899999998 567789999999998 99999998886
No 218
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=27.89 E-value=31 Score=34.49 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CCceEEECCeecCCCceEEeeCCCEEEEc
Q 004011 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (779)
Q Consensus 196 sNGtV~VNGkkVgKg~kviL~nGDEIvfs 224 (779)
..|.|.|||+.+.+. ...++.||+|.+.
T Consensus 122 ~~G~V~VNG~~v~~p-s~~V~~gD~I~V~ 149 (209)
T 2vqe_D 122 RHGHITVNGRRVDLP-SYRVRPGDEIAVA 149 (209)
T ss_dssp HTTCEEETTEECCCT-TCBCCTTCEEEEC
T ss_pred HCCCEEECCEEeCcC-CcCcCCCCEEEEc
Confidence 456799999999754 3456789999884
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.53 E-value=37 Score=38.67 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc----------cCeEEEEeccCCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF----------SARLLIVDSLLLP 531 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F----------~AkLLilDs~~l~ 531 (779)
..-|||.||+| .-..+||++||+.+ +.+++.+|...+.
T Consensus 207 ~~~vlL~G~~G--tGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~ 254 (758)
T 1r6b_X 207 KNNPLLVGESG--VGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_dssp SCEEEEECCTT--SSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---
T ss_pred CCCeEEEcCCC--CCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh
Confidence 35689999999 57899999999987 7788888877664
No 220
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=27.51 E-value=79 Score=30.84 Aligned_cols=56 Identities=30% Similarity=0.386 Sum_probs=37.9
Q ss_pred HHHHHHHhhcccCcCCEEEEEcchhhhcc-------CChhhHHHHHHHhccC---CCCEEEEeeccccC
Q 004011 690 INELFEVALNESKSSPLIVFVKDIEKSLT-------GNNDAYGALKSKLENL---PSNVVVIGSHTQLD 748 (779)
Q Consensus 690 IqsLyEVL~S~S~t~PlILYiKDVEK~L~-------gs~e~y~~fq~mLeKL---sG~VLIIGSq~~~D 748 (779)
+..+|+-+. +..+-||||.|++.++. .+.++.+.|...++.+ ..+|+||+..+..+
T Consensus 113 ~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 113 MKKIFDDAY---KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp HHHHHHHHH---TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred HHHHHHHHH---hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 444444433 36799999999999653 2455666777777764 44788998877654
No 221
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=27.03 E-value=57 Score=34.28 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc----------cCeEEEEeccCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF----------SARLLIVDSLLL 530 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F----------~AkLLilDs~~l 530 (779)
.+.|||+||+| .-..++||++++.+ ....+-|+...+
T Consensus 45 ~~~lli~GpPG--TGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 45 NKLFYITNADD--STKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp CCEEEEECCCS--HHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
No 222
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=26.79 E-value=34 Score=33.74 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.0
Q ss_pred CceEEECCeecCCCceEEeeCCCEEEEc
Q 004011 197 KGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (779)
Q Consensus 197 NGtV~VNGkkVgKg~kviL~nGDEIvfs 224 (779)
+|-|.|||+.+.+. ...|+.||+|.+.
T Consensus 27 ~G~V~VNG~~v~~~-~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 27 GNRVTVDGEIVRNA-AFKLLPEHDVAYD 53 (234)
T ss_dssp TTCEEETTEECCCT-TCEECTTCCEEET
T ss_pred cCeEEECCEEeCCC-CCCCCCCCEEEEe
Confidence 57799999998643 4457889999884
No 223
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=26.62 E-value=67 Score=36.13 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=45.2
Q ss_pred ccccccccccchhhHHHHHHhhhhccccCcccccccCCCCCCCCceeecCCCC---chHHHHHHHHHHHhhccCeEEEE
Q 004011 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 450 ~VSFd~FPYYLSE~TK~vL~saayvHLk~~~~sKyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~~F~AkLLil 525 (779)
..+|+++| |++..+..|-.-.|-+|...-..- ...+--.++.+|++||.| |..|...+.+++.+. +.+.|++
T Consensus 7 ~~~~~~l~--l~~~~~~~l~~~g~~~l~~~Q~~~-i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~il~i 81 (715)
T 2va8_A 7 WMPIEDLK--LPSNVIEIIKKRGIKKLNPPQTEA-VKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-GGKAIYV 81 (715)
T ss_dssp CCBGGGSS--SCHHHHHHHHTTSCCBCCHHHHHH-HHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CSEEEEE
T ss_pred cCcHHHcC--CCHHHHHHHHhCCCCCCCHHHHHH-HHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 36799988 688888888776676665421111 111111268999999999 678877776665532 3344443
No 224
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.62 E-value=33 Score=34.88 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=24.8
Q ss_pred eeecCCCCchHHHHHHHHHHHhhcc-----CeEEEEeccC
Q 004011 495 ILLSGPAGSEIYQETLAKALAKHFS-----ARLLIVDSLL 529 (779)
Q Consensus 495 ILLSGPaGsEiYQE~LaKALA~~F~-----AkLLilDs~~ 529 (779)
+||.||+| .-..+|||+||+.+. ..++-++..+
T Consensus 49 ~ll~Gp~G--~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 49 LLFYGPPG--TGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp EEEECSSS--SSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred EEEECCCC--CCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 89999999 578899999999853 3455555443
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=26.49 E-value=29 Score=32.14 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=26.6
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEec
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs 527 (779)
.+|.|.||.|+ -.-+|+|.||+ +|++++-.|.
T Consensus 2 ~~i~i~G~~Gs--GKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLTGNIGC--GKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCc--CHHHHHHHHHH-CCCEEEEccH
Confidence 36999999994 67899999999 8988776664
No 226
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=26.44 E-value=44 Score=30.43 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.5
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEe
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHF---SARLLIVD 526 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilD 526 (779)
-|.|.||.|| -.-+++|.|+++| |.+.+..+
T Consensus 2 ~I~l~G~~Gs--GKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGS--GKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHHCCCeEEEee
Confidence 4899999994 6889999999999 98887654
No 227
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=26.43 E-value=35 Score=33.98 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=20.5
Q ss_pred CceEEECCeecCCCceEEeeCCCEEEE
Q 004011 197 KGEVEVNGNVHPKDSQVVLRGGDELVF 223 (779)
Q Consensus 197 NGtV~VNGkkVgKg~kviL~nGDEIvf 223 (779)
+|.|.|||+.+.+. ...|..||+|.+
T Consensus 26 ~G~V~VNG~~v~~~-~~~v~~gD~I~v 51 (243)
T 1vio_A 26 QSAVKINGEIVKSG-SVQISQEDEIYF 51 (243)
T ss_dssp TTCEEETTEECCCT-TCEECTTSCEEE
T ss_pred cCcEEECCEEeCCC-CCCcCCCCEEEE
Confidence 57799999998643 345789998877
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=26.39 E-value=45 Score=30.38 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=30.3
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc---cCeEEEEeccCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 530 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F---~AkLLilDs~~l 530 (779)
...|.|.|+.|+ -.-+++|+||.++ |.+.+.+|.-.+
T Consensus 5 g~~i~l~G~~Gs--GKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGA--GKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTS--SHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCC--CHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 346899999995 5788999999998 888888886444
No 229
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=26.24 E-value=83 Score=31.41 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcccCcCCEEEEEcchhhhccC--ChhhHHHHHHHhccC--CCCEEEEeecccc
Q 004011 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL--PSNVVVIGSHTQL 747 (779)
Q Consensus 689 lIqsLyEVL~S~S~t~PlILYiKDVEK~L~g--s~e~y~~fq~mLeKL--sG~VLIIGSq~~~ 747 (779)
+++.|++.+.. ...|+||+|-|++.+... ..+.+..+-..++.+ +.+|.|||.-+..
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 45666666653 345999999999997655 445544444445554 5677777766554
No 230
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=26.23 E-value=1.2e+02 Score=26.57 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=32.5
Q ss_pred HHHHHHHhhcccCcCCEEEEEcchhhhccC-----ChhhHHHHHHHhccCCCCEEEEeec
Q 004011 690 INELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSH 744 (779)
Q Consensus 690 IqsLyEVL~S~S~t~PlILYiKDVEK~L~g-----s~e~y~~fq~mLeKLsG~VLIIGSq 744 (779)
++.+++-+.. ...|.||+|.|++.+... ..+.++.|..+++. +++.||+.-
T Consensus 103 ~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~ 158 (195)
T 1jbk_A 103 LKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGAT 158 (195)
T ss_dssp HHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEE
T ss_pred HHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeC
Confidence 4444443332 367999999999996532 35667888888875 344445443
No 231
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=25.50 E-value=97 Score=29.29 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=39.4
Q ss_pred cccccccccchhhHHHHHHhhhhccccCc--ccccccCCCCCCCCceeecCCCC---chHHHHHHHHHHH
Q 004011 451 VSFESFPYYLSDITKNVLIASTYVHLKCN--NFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALA 515 (779)
Q Consensus 451 VSFd~FPYYLSE~TK~vL~saayvHLk~~--~~sKyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA 515 (779)
.+|++|| |++.....|....|.++..- +..... -..+.+|+++|.| |..|.-.+...|.
T Consensus 25 ~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~ 88 (236)
T 2pl3_A 25 TRFSDFP--LSKKTLKGLQEAQYRLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALY 88 (236)
T ss_dssp SBGGGSC--CCHHHHHHHHHTTCCBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHH
Confidence 4799998 68999999888777666531 111111 1246799999999 6677665555554
No 232
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=25.35 E-value=36 Score=33.50 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=40.5
Q ss_pred cccccccccccchhhHHHHHHhhhhccccCc--ccccccCCCCCCCCceeecCCCC---chHHHHHHHHHHHh
Q 004011 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCN--NFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAK 516 (779)
Q Consensus 449 i~VSFd~FPYYLSE~TK~vL~saayvHLk~~--~~sKyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~ 516 (779)
...+|++|+..|++.....|-...|-++..- +..... + .++.+|+++|.| |..|+-.+...|.+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~--~~~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPL--L--EGRDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHH--H--HTCCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHH--h--CCCcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 4578999998899999999988888766541 111111 1 136799999999 67887766666654
No 233
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=25.09 E-value=37 Score=30.68 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=26.7
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCC
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l 530 (779)
...|+|.||+|+ -.-+|+|+||..+|..+ +|.-.+
T Consensus 8 g~~i~l~G~~Gs--GKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGS--GKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTS--CHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCC--CHHHHHHHHHHhhCcEE--EeCccc
Confidence 346999999994 67889999999988654 454444
No 234
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.04 E-value=63 Score=26.17 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=27.9
Q ss_pred cCCcccCCCCeeeEeecCCCCCccCCCCCCCCCCcCCceeeecccCCCCceeeec
Q 004011 594 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRF 648 (779)
Q Consensus 594 s~~~t~kkGdrVkyvGs~~~~s~~~~~~R~ps~G~rG~V~l~fE~N~ssKVgVrF 648 (779)
+.+..|++||.|+-+ .||-.|..|+| -+.|+. ||-|..
T Consensus 3 ~~~~~f~~GD~V~V~-------------~Gpf~g~~G~V---~evd~e-~v~V~v 40 (59)
T 2e6z_A 3 SGSSGFQPGDNVEVC-------------EGELINLQGKI---LSVDGN-KITIMP 40 (59)
T ss_dssp CCCSSCCTTSEEEEC-------------SSTTTTCEEEE---CCCBTT-EEEEEE
T ss_pred cccccCCCCCEEEEe-------------ecCCCCCEEEE---EEEeCC-EEEEEE
Confidence 345678999999875 46778889998 355665 887774
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=24.56 E-value=40 Score=32.60 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=22.9
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCeE
Q 004011 492 CPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (779)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~F~AkL 522 (779)
+|=|.|+||+| --.-+|+|+|...+.-.|
T Consensus 1 ~RpIVi~GPSG--~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 1 SRPIVISGPSG--TGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCCEEEECCTT--SSHHHHHHHHHHHCTTTE
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHhCCCCe
Confidence 46699999999 468889999988775443
No 236
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=24.47 E-value=24 Score=34.85 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=45.8
Q ss_pred cccccccccchhhHHHHHHhhhhccccCc--ccccccCCCCCCCCceeecCCCC---chHHHHHHHHHHHhhccCeEEEE
Q 004011 451 VSFESFPYYLSDITKNVLIASTYVHLKCN--NFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 451 VSFd~FPYYLSE~TK~vL~saayvHLk~~--~~sKyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~~F~AkLLil 525 (779)
.+|++++ |++.....|-...|.+|+.- +..... -.-.+.+++++|.| |..|...+...+.+.-+.+.|++
T Consensus 6 ~~f~~~~--l~~~~~~~l~~~g~~~~~~~Q~~~i~~~---~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil 80 (367)
T 1hv8_A 6 MNFNELN--LSDNILNAIRNKGFEKPTDIQMKVIPLF---LNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIIL 80 (367)
T ss_dssp CCGGGSS--CCHHHHHHHHHHTCCSCCHHHHHHHHHH---HHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEE
T ss_pred CchhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHH---hCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEE
Confidence 4688876 79999999998888776542 221111 11236899999999 66777666655554445566655
No 237
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=24.45 E-value=39 Score=28.98 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=21.5
Q ss_pred EEECCeecCCCceEEeeCCCEEEEccCC
Q 004011 200 VEVNGNVHPKDSQVVLRGGDELVFSPSG 227 (779)
Q Consensus 200 V~VNGkkVgKg~kviL~nGDEIvfs~~~ 227 (779)
..|||+.++-. .+|++||+|-+-+..
T Consensus 44 AkVNG~~v~L~--~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 44 AKVDGRIVPID--YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEETTEEECTT--CBCCTTCBEEEEECC
T ss_pred EEECCEEcCCC--cccCCCCEEEEEccC
Confidence 48899999985 679999999886643
No 238
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=24.43 E-value=1.4e+02 Score=29.31 Aligned_cols=58 Identities=21% Similarity=0.445 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcccCcCCEEEEEcchhhhccCC--------hhhHHHHHHHhccCC-----CCEEEEeeccccC
Q 004011 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP-----SNVVVIGSHTQLD 748 (779)
Q Consensus 688 LlIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs--------~e~y~~fq~mLeKLs-----G~VLIIGSq~~~D 748 (779)
-.+..+|+.+.. ..|-||||-+++.++... .+..+.|-..++.++ ++|+|||.-+..+
T Consensus 100 ~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 100 KLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp HHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred HHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 345566666654 789999999999976532 233334445566665 4699999877543
No 239
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=24.31 E-value=29 Score=24.39 Aligned_cols=10 Identities=60% Similarity=0.840 Sum_probs=8.1
Q ss_pred CchHHHHHHH
Q 004011 502 GSEIYQETLA 511 (779)
Q Consensus 502 GsEiYQE~La 511 (779)
|-|-|||||-
T Consensus 1 geeeyqemle 10 (26)
T 2dpr_A 1 GEEEYQEMLE 10 (26)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5688999985
No 240
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=23.94 E-value=41 Score=33.77 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=27.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l~ 531 (779)
..|.|.||+| -..-+|+|.||++++..+ +|.-.++
T Consensus 10 ~~i~i~G~~G--sGKsTla~~la~~lg~~~--~d~g~~~ 44 (233)
T 3r20_A 10 LVVAVDGPAG--TGKSSVSRGLARALGARY--LDTGAMY 44 (233)
T ss_dssp CEEEEECCTT--SSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHhCCCc--ccCCcHH
Confidence 4799999999 478899999999998654 5654553
No 241
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=23.43 E-value=1e+02 Score=31.80 Aligned_cols=58 Identities=19% Similarity=0.410 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcccCcCCEEEEEcchhhhccCC--------hhhHHHHHHHhccC----CCCEEEEeeccccC
Q 004011 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL----PSNVVVIGSHTQLD 748 (779)
Q Consensus 688 LlIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs--------~e~y~~fq~mLeKL----sG~VLIIGSq~~~D 748 (779)
-.+..+|+.+.. ..|-||||-|++.+.... .+..+.|-..|+.+ ..+|+|||.-+..+
T Consensus 163 ~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 163 KMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp HHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred HHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 345667776654 679999999999976532 12333344444433 46899999876543
No 242
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=23.11 E-value=43 Score=32.12 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=39.6
Q ss_pred CCccccccccccccchhhHHHHHHhhhhccccC--cccccccCCCCCCCCceeecCCCC---chHHHHHHHHHHH
Q 004011 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKC--NNFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALA 515 (779)
Q Consensus 446 g~ei~VSFd~FPYYLSE~TK~vL~saayvHLk~--~~~sKyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA 515 (779)
+.+...+|++++ |++.....|....|-.+.. .+..... + ..+.+|+++|.| |..|.-.+...|.
T Consensus 25 ~~~~~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~ai~~i--~--~~~~~li~apTGsGKT~~~~l~~l~~l~ 93 (237)
T 3bor_A 25 WNEIVDNFDDMN--LKESLLRGIYAYGFEKPSAIQQRAIIPC--I--KGYDVIAQAQSGTGKTATFAISILQQLE 93 (237)
T ss_dssp --CCCCSGGGSC--CCHHHHHHHHHHTCCSCCHHHHHHHHHH--H--TTCCEEECCCSSHHHHHHHHHHHHHHCC
T ss_pred CCCccCChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHH--h--CCCCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 334556799987 6888888888777765543 1111111 1 236799999999 5666655555543
No 243
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=22.91 E-value=68 Score=36.27 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=45.0
Q ss_pred cccccccccchhhHHHHHHhhhhccccCc--ccccccCCCCCCCCceeecCCCC---chHHHHHHHHHHHhhccCeEEEE
Q 004011 451 VSFESFPYYLSDITKNVLIASTYVHLKCN--NFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 451 VSFd~FPYYLSE~TK~vL~saayvHLk~~--~~sKyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~~F~AkLLil 525 (779)
.+|+++| |++..+..|-.-.|-+|... +.... -+. .++.+|++||.| |.+|...+.+++... +.+.|++
T Consensus 1 ~~f~~l~--l~~~~~~~l~~~g~~~l~~~Q~~~i~~--~~~-~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i 74 (720)
T 2zj8_A 1 MRVDELR--VDERIKSTLKERGIESFYPPQAEALKS--GIL-EGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYI 74 (720)
T ss_dssp CBGGGCC--SCHHHHHHHHHTTCCBCCHHHHHHHTT--TGG-GTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEE
T ss_pred CcHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHH--Hhc-CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 3688888 68888888877667666542 22111 011 268899999999 688877777666533 4455544
No 244
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=22.87 E-value=45 Score=32.47 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.8
Q ss_pred ceeecCCCCchHHHHHHHHHHHhhccCeEE
Q 004011 494 RILLSGPAGSEIYQETLAKALAKHFSARLL 523 (779)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~F~AkLL 523 (779)
.|+|-||||+ -.-++|+-||++||..-+
T Consensus 2 ~Iil~GpPGs--GKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGA--GKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHCCeEE
Confidence 5899999994 677899999999998754
No 245
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=22.85 E-value=47 Score=26.54 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEECCeecCCCceEEeeCCCEEEEcc
Q 004011 200 VEVNGNVHPKDSQVVLRGGDELVFSP 225 (779)
Q Consensus 200 V~VNGkkVgKg~kviL~nGDEIvfs~ 225 (779)
+.|||+.++.. .+|+.||+|-|-+
T Consensus 39 a~vNg~lvdl~--~~L~~~~~Veivt 62 (73)
T 2kmm_A 39 AKVNHKLVPLS--YVLNSGDQVEVLS 62 (73)
T ss_dssp EEETTEECCTT--CBCCSSSBEEEEE
T ss_pred EEECCEEeCCC--cCcCCCCEEEEEE
Confidence 47899999994 7889999887744
No 246
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=22.69 E-value=33 Score=38.63 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=44.7
Q ss_pred cccccccccchhhHHHHHHhhhhccccCc--ccccccCCCCCCCCceeecCCCC---chHHHHHHHHHHHhhccCeEEEE
Q 004011 451 VSFESFPYYLSDITKNVLIASTYVHLKCN--NFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAKHFSARLLIV 525 (779)
Q Consensus 451 VSFd~FPYYLSE~TK~vL~saayvHLk~~--~~sKyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~~F~AkLLil 525 (779)
.+|+++|-+|++..+..|-...|-+|..- +.... +. .++.+|+++|.| |..|...+.+++.+ +.+.|++
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~---i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i 74 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEK---VF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYV 74 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHH---HT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHH---Hh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEE
Confidence 36888888889999888877777666642 22222 11 268899999999 67887777766654 3344443
No 247
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=22.69 E-value=1.4e+02 Score=25.63 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=29.0
Q ss_pred eEEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCeeE
Q 004011 188 GALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSY 231 (779)
Q Consensus 188 va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aY 231 (779)
.-++.++++.|++.|||+ .+.|+.||-|.+-.-..|.+
T Consensus 55 ~Ei~~v~~G~~~~~i~~~------~~~l~~Gd~~~i~~~~~H~~ 92 (128)
T 4i4a_A 55 YELFIVIQGNAIIRINDE------DFPVTKGDLIIIPLDSEHHV 92 (128)
T ss_dssp EEEEEEEESEEEEEETTE------EEEEETTCEEEECTTCCEEE
T ss_pred eEEEEEEeCEEEEEECCE------EEEECCCcEEEECCCCcEEe
Confidence 356778888899999876 67889999888866555554
No 248
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=22.58 E-value=43 Score=32.19 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=27.3
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEEEEeccCC
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLLilDs~~l 530 (779)
.-|.|+||.|+ --.+++|+||+.+|.+++ | ..+
T Consensus 7 ~iI~i~g~~Gs--Gk~ti~~~la~~lg~~~~--D-~~~ 39 (201)
T 3fdi_A 7 IIIAIGREFGS--GGHLVAKKLAEHYNIPLY--S-KEL 39 (201)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHHHTTCCEE--C-HHH
T ss_pred eEEEEeCCCCC--CHHHHHHHHHHHhCcCEE--C-HHH
Confidence 46999999995 577899999999999866 7 444
No 249
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=22.52 E-value=57 Score=29.48 Aligned_cols=47 Identities=23% Similarity=0.189 Sum_probs=33.9
Q ss_pred ceEEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCeeEEEeec
Q 004011 187 SGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (779)
Q Consensus 187 ~va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIFq~l 236 (779)
+.++||--.-+ |||||++|..- ..-..+|-|.-|...+..+||=-..
T Consensus 24 ~RIvLeK~tmd--VwvNG~~iet~-geFvd~GTet~F~lg~~~c~I~a~s 70 (94)
T 2kd2_A 24 LRVVLEKDTMD--VWCNGQKMETA-GEFVDDGTETHFSVGNHDCYIKAVS 70 (94)
T ss_dssp EEEEEETTTTE--EEESSSBCCCC-CEECSSSEEEEEEETTEEEEEEEEE
T ss_pred EEEEEecCcEE--EEECCEEeEEe-eEEecCCcEEEEEeCCceEEEEEEe
Confidence 34445544444 89999999984 7778899999998877777765443
No 250
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=22.40 E-value=43 Score=34.89 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCceEEECCeecCCCceEEeeCCCEEEEc
Q 004011 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (779)
Q Consensus 196 sNGtV~VNGkkVgKg~kviL~nGDEIvfs 224 (779)
.+|-|.|||+.+..+ ..+..||+|.+.
T Consensus 29 ~~G~V~VNG~~v~~~--~~V~~gD~I~v~ 55 (290)
T 3dh3_A 29 EQGNVFLNGKRATIG--DQVKPGDVVKVN 55 (290)
T ss_dssp HTTCEEETTEECCTT--CEECTTCCEEET
T ss_pred HCCCEEECCEEccCC--cCcCCCCEEEec
Confidence 457799999999443 456789999883
No 251
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.29 E-value=1.6e+02 Score=29.50 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHhhccc-CcCCEEEEEcchhhhccCChhhHHHHHHHhccCCCCEEEEeecc
Q 004011 691 NELFEVALNES-KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (779)
Q Consensus 691 qsLyEVL~S~S-~t~PlILYiKDVEK~L~gs~e~y~~fq~mLeKLsG~VLIIGSq~ 745 (779)
..+++.+.... ...+.||+|.|++.+ +.+..+.|.+.|+..++++++|+.-+
T Consensus 105 ~~l~~~~~~~~~~~~~~vliiDe~~~l---~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 105 RDLLDNVQYAPARGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp HHHHHHTTSCCSSSSSEEEEEECGGGS---CHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred HHHHHHHhhccccCCeEEEEEECcchh---cHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 34444444322 456899999999984 35667788899999999888887654
No 252
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.23 E-value=28 Score=29.11 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=21.3
Q ss_pred CceEEECCeecCCC-ceEEeeCCCEEEEcc
Q 004011 197 KGEVEVNGNVHPKD-SQVVLRGGDELVFSP 225 (779)
Q Consensus 197 NGtV~VNGkkVgKg-~kviL~nGDEIvfs~ 225 (779)
.|.|+|||+.|.|- ..+....+|+|.|.-
T Consensus 32 ~G~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 32 QGHVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp TTCEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred CCcEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 47799999999775 455555589998743
No 253
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=22.07 E-value=56 Score=29.93 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=35.4
Q ss_pred ccccccccchhhHHHHHHhhhhccccC--cccccccCCCCCCCCceeecCCCC---chHHHHHHHHHH
Q 004011 452 SFESFPYYLSDITKNVLIASTYVHLKC--NNFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKAL 514 (779)
Q Consensus 452 SFd~FPYYLSE~TK~vL~saayvHLk~--~~~sKyt~~Lss~s~rILLSGPaG---sEiYQE~LaKAL 514 (779)
+|++|| |++.....|-...|..+.. .+...... ..+.+++++|.| |..|.--+...|
T Consensus 2 ~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 2 EFKDFP--LKPEILEALHGRGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CGGGSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred ChhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 688887 6888888888777765543 12111111 136799999999 445554444444
No 254
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=21.91 E-value=2.1e+02 Score=25.51 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=29.8
Q ss_pred CcCCEEEEEcchhhhccCChhhHHHHHHHhccCCCCEEEEeec
Q 004011 702 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSH 744 (779)
Q Consensus 702 ~t~PlILYiKDVEK~L~gs~e~y~~fq~mLeKLsG~VLIIGSq 744 (779)
...+.||+|.|++.+- .+....|...|+..+.+++||+.-
T Consensus 100 ~~~~~vliiDe~~~l~---~~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 100 GAPFKIIFLDEADALT---ADAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp TCSCEEEEEETGGGSC---HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred ccCceEEEEeChhhcC---HHHHHHHHHHHHhcCCCCeEEEEe
Confidence 4689999999999853 344566778888888877666653
No 255
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=21.88 E-value=1.2e+02 Score=25.58 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=31.4
Q ss_pred EEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCeeEEE
Q 004011 189 ALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIF 233 (779)
Q Consensus 189 a~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIF 233 (779)
.++.++++.+++.|+|+ .+.|+.||-|.|-.-..|.|.-
T Consensus 60 e~~~vl~G~~~~~i~~~------~~~l~~Gd~i~i~~~~~H~~~~ 98 (114)
T 2ozj_A 60 TLYLILQGEAVITFDDQ------KIDLVPEDVLMVPAHKIHAIAG 98 (114)
T ss_dssp EEEEEEEEEEEEEETTE------EEEECTTCEEEECTTCCBEEEE
T ss_pred eEEEEEeCEEEEEECCE------EEEecCCCEEEECCCCcEEEEe
Confidence 56778888888888875 6889999999997766777654
No 256
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=21.84 E-value=1.5e+02 Score=25.92 Aligned_cols=41 Identities=34% Similarity=0.440 Sum_probs=29.7
Q ss_pred ceEEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCeeEEE
Q 004011 187 SGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIF 233 (779)
Q Consensus 187 ~va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIF 233 (779)
.-.++-++++.|++.|||+ .+.|+.||-|.+....-|.|..
T Consensus 38 ~~~i~~v~~G~~~~~i~~~------~~~l~~Gd~~~i~p~~~H~~~~ 78 (164)
T 2arc_A 38 GYILNLTIRGQGVVKNQGR------EFVCRPGDILLFPPGEIHHYGR 78 (164)
T ss_dssp SEEEEEEEEECEEEEETTE------EEEECTTCEEEECTTCCEEEEE
T ss_pred ceEEEEEEEeEEEEEECCE------EEEecCCeEEEEcCCCCEEEEe
Confidence 3456778889999999985 5678888887776655566543
No 257
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=21.58 E-value=1.4e+02 Score=24.89 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=31.5
Q ss_pred EEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCeeEEE
Q 004011 189 ALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIF 233 (779)
Q Consensus 189 a~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIF 233 (779)
-++.++++.+++.++| +..+.|..||-|.|-.-..|.|.-
T Consensus 50 E~~~Vl~G~~~~~~~~-----~~~~~l~~Gd~~~ip~~~~H~~~~ 89 (107)
T 2i45_A 50 KVLFAVEGDMAVDFAD-----GGSMTIREGEMAVVPKSVSHRPRS 89 (107)
T ss_dssp EEEEESSSCEEEEETT-----SCEEEECTTEEEEECTTCCEEEEE
T ss_pred EEEEEEeCEEEEEECC-----CcEEEECCCCEEEECCCCcEeeEe
Confidence 5577788888888887 358999999999997766676654
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=21.50 E-value=50 Score=31.77 Aligned_cols=35 Identities=37% Similarity=0.442 Sum_probs=26.5
Q ss_pred CCCCCCCceeecCCCCchHHHHHHHHHHHhhccCeEE
Q 004011 487 DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (779)
Q Consensus 487 ~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~AkLL 523 (779)
+=......|.|.||.|+ -.-+++|.||+.+|...+
T Consensus 11 ~~~~~~~~i~i~G~~gs--GKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASS--GKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp ---CCCCEEEEECSSCS--SHHHHHHHHHHHHCCEEE
T ss_pred ccccCCcEEEEECCCCC--CHHHHHHHHHHHcCCcee
Confidence 44455668999999994 678899999999997644
No 259
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.42 E-value=42 Score=33.63 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=23.0
Q ss_pred CCceEEECCeecCCCceEEeeCCCEEEEccCC
Q 004011 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 227 (779)
Q Consensus 196 sNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~ 227 (779)
..|.|.|||+.|.+.. ..+..||+|.+.-..
T Consensus 112 ~~G~V~VNG~~V~~pS-~~V~~gD~I~V~~~~ 142 (201)
T 3bbn_D 112 NHRHILVNGRIVDIPS-YRCKPQDTIMARDEQ 142 (201)
T ss_dssp HTTCEEETTEECCCTT-CBCCTTEEEEECSST
T ss_pred hCCcEEeCCEEEeecc-eecCCCCEEEEcccc
Confidence 3578999999997753 455789999885433
No 260
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=21.22 E-value=50 Score=31.93 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=24.7
Q ss_pred cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCe
Q 004011 483 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (779)
Q Consensus 483 Kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~F~Ak 521 (779)
.|...+..-...|.|.||.|+ -.-+|+|+||+++|..
T Consensus 18 ~~~~~~~~~~~~i~l~G~~Gs--GKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 18 LYFQSMASKLLRAVILGPPGS--GKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp --------CCCEEEEECCTTS--SHHHHHHHHHHHHCCC
T ss_pred HHHHHhcCCCcEEEEECCCCC--CHHHHHHHHHHHhCCe
Confidence 344445444578999999994 6789999999999754
No 261
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=20.87 E-value=1.2e+02 Score=26.28 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=29.0
Q ss_pred EEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCeeEE
Q 004011 189 ALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYI 232 (779)
Q Consensus 189 a~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYI 232 (779)
-++.++++.+++.|++ |..+.|+.||-|.|-.-..|.|.
T Consensus 51 E~~~Vl~G~~~~~i~~-----g~~~~l~~GD~i~ip~g~~H~~~ 89 (101)
T 1o5u_A 51 ETCYILEGKVEVTTED-----GKKYVIEKGDLVTFPKGLRCRWK 89 (101)
T ss_dssp EEEEEEEEEEEEEETT-----CCEEEEETTCEEEECTTCEEEEE
T ss_pred EEEEEEeCEEEEEECC-----CCEEEECCCCEEEECCCCcEEEE
Confidence 5677788888888872 45789999999999665555554
No 262
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=20.72 E-value=1e+02 Score=30.94 Aligned_cols=56 Identities=18% Similarity=0.507 Sum_probs=36.6
Q ss_pred HHHHHHHhhcccCcCCEEEEEcchhhhccCC-----------hhhHHHHHHHhccC--CCCEEEEeeccccC
Q 004011 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQLD 748 (779)
Q Consensus 690 IqsLyEVL~S~S~t~PlILYiKDVEK~L~gs-----------~e~y~~fq~mLeKL--sG~VLIIGSq~~~D 748 (779)
+..+|+.... ..|-||||.+++.+.... .+..+.|-..|+.+ ..+|+|||.-+..+
T Consensus 97 ~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 97 VREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 4556665544 679999999999865421 23334454555544 34799999887654
No 263
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=20.47 E-value=1e+02 Score=30.95 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=28.2
Q ss_pred CcCCEEEEEcchhhhccCCh----------hhHHHHHHHhccC-------------CCCEEEEeeccccC
Q 004011 702 KSSPLIVFVKDIEKSLTGNN----------DAYGALKSKLENL-------------PSNVVVIGSHTQLD 748 (779)
Q Consensus 702 ~t~PlILYiKDVEK~L~gs~----------e~y~~fq~mLeKL-------------sG~VLIIGSq~~~D 748 (779)
+..|-||||-|++++..+.. +..+.|-..|+.+ ..+|+||+.-+..+
T Consensus 97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 57899999999999665222 3446666666522 24688888777544
No 264
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.35 E-value=1.6e+02 Score=29.15 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcccCcCCEEEEEcchhhhccCC-hhhHHHHHHHhccC-CCCEEEEeec
Q 004011 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGN-NDAYGALKSKLENL-PSNVVVIGSH 744 (779)
Q Consensus 689 lIqsLyEVL~S~S~t~PlILYiKDVEK~L~gs-~e~y~~fq~mLeKL-sG~VLIIGSq 744 (779)
+++.+++.+.. ...|.||+|-|++.+.... .+....|...++.+ ..+|.||+.-
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 45666666654 3449999999999977653 66666676777655 3356555543
No 265
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=20.20 E-value=54 Score=32.48 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=23.8
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCeEE
Q 004011 493 PRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (779)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~F~AkLL 523 (779)
+-|+|-||+|+ -.-++|+-||++|+..-|
T Consensus 30 kiI~llGpPGs--GKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGS--GKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTC--CHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHHCCceE
Confidence 34788999994 677899999999997754
No 266
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=20.14 E-value=1.5e+02 Score=25.55 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=30.9
Q ss_pred EEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCeeEE
Q 004011 189 ALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYI 232 (779)
Q Consensus 189 a~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYI 232 (779)
.++.++++.+.+.|||+ .+.|+.||-|.|-.-..|.|.
T Consensus 58 e~~~Vl~G~~~~~i~~~------~~~l~~Gd~i~ip~~~~H~~~ 95 (114)
T 3fjs_A 58 STIQCLEGEVEIGVDGA------QRRLHQGDLLYLGAGAAHDVN 95 (114)
T ss_dssp EEEEEEESCEEEEETTE------EEEECTTEEEEECTTCCEEEE
T ss_pred EEEEEEECEEEEEECCE------EEEECCCCEEEECCCCcEEEE
Confidence 67888999999999976 689999999999665566553
No 267
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=20.12 E-value=1.4e+02 Score=27.66 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=29.5
Q ss_pred eEEEEEecCCceEEECCeecCCCceEEeeCCCEEEEccCCCeeE
Q 004011 188 GALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSY 231 (779)
Q Consensus 188 va~LEd~ssNGtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aY 231 (779)
.-++.++++.++++|+|+ .+.|..||-|.|-....|.|
T Consensus 127 ~E~~~Vl~G~~~~~~~~~------~~~l~~GD~i~i~~~~~H~~ 164 (192)
T 1y9q_A 127 IEYIHVLEGIMKVFFDEQ------WHELQQGEHIRFFSDQPHGY 164 (192)
T ss_dssp EEEEEEEESCEEEEETTE------EEEECTTCEEEEECSSSEEE
T ss_pred EEEEEEEEeEEEEEECCE------EEEeCCCCEEEEcCCCCeEe
Confidence 367788889999998864 57899999999866555554
Done!