BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004012
(779 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1Q54|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1OW2|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
pdb|1OW2|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
Length = 183
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S AGH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVAGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S AGH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVAGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase
Length = 190
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRARATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
pdb|1X84|B Chain B, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFS|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFZ|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1NFZ|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1PPV|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPV|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PVF|A Chain A, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|1PVF|B Chain B, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|2VNP|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNP|B Chain B, Monoclinic Form Of Idi-1
pdb|2VNQ|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNQ|B Chain B, Monoclinic Form Of Idi-1
Length = 183
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
pdb|1I9A|B Chain B, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
Length = 182
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 7 QEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPG 66
Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WPG
Sbjct: 2 QTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWPG 60
Query: 67 MWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFA 126
+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 61 VWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEVC 118
Query: 127 DVYLVTT 133
V+ T
Sbjct: 119 PVFAART 125
>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
pdb|1X83|B Chain B, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINL-PKDAFEFVFTFLQQNVINDGKFINNE 124
G+W S GH G+S+ + R + ELG+ + P ++ F F + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRF---RATDPSGIVENE 116
Query: 125 FADVYLVTT 133
V+ T
Sbjct: 117 VCPVFAART 125
>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G73|B Chain B, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G74|A Chain A, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2G74|B Chain B, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2B2K|A Chain A, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
pdb|2B2K|B Chain B, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
Length = 183
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINL-PKDAFEFVFTFLQQNVINDGKFINNE 124
G+W S GH G+S+ + R + ELG+ + P ++ F F + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRF---RATDPSGIVENE 116
Query: 125 FADVYLVTT 133
V+ T
Sbjct: 117 VCPVFAART 125
>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate
Delta-Isomerase From Salmonella Entericase
Length = 184
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 8 EEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGM 67
EEH+ +L + +G + + H + W+F E Q LL+ RR+ K +WPG+
Sbjct: 6 EEHVVLLDEQDKPSGTLEKYAAHTLNTPLHLAFSCWLFNEDGQ-LLVTRRSLSKKAWPGV 64
Query: 68 WDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFAD 127
W S GH G+++ + R + ELG+ + V+ + + NE
Sbjct: 65 WTNSVCGHPQQGETTEEAIIRRCRFELGVEITD--LTPVYPHFSYRATDPNGIVENEVCP 122
Query: 128 VYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDV 176
V+ + + + + + + S K + +K+LLA +F P+ V
Sbjct: 123 VFAARATSVLQVNSEEVXDYQWSEFKSV----WKSLLATPW-AFSPWXV 166
>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate
Isomerase
pdb|2ICK|A Chain A, Human Isopentenyl Diphophate Isomerase Complexed With
Substrate Analog
Length = 233
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 34 GDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL---------I 84
G HR + ++F + +LLLQ+R+D K ++PG + + H + + L
Sbjct: 54 GLLHRAFSVFLF-NTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRR 112
Query: 85 SAQRELQEELGINL---PKDAFEFVFTFLQQNVINDGKFINNEFADVYLV---TTLNPIP 138
+AQR L+ ELGI L P + ++ T + +DG + +E + LV TLNP P
Sbjct: 113 AAQRRLKAELGIPLEEVPPEEINYL-TRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDP 171
Query: 139 LE 140
E
Sbjct: 172 NE 173
>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group
P212121
Length = 235
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 34 GDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL---------I 84
G HR + ++F + +LLLQ+R+D K ++PG + + H + + L
Sbjct: 56 GLLHRAFSVFLF-NTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRR 114
Query: 85 SAQRELQEELGINL---PKDAFEFVFTFLQQNVINDGKFINNEFADVYLV---TTLNPIP 138
+AQR L+ ELGI L P + ++ T + +DG + +E + LV TLNP P
Sbjct: 115 AAQRRLKAELGIPLEEVPPEEINYL-TRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDP 173
Query: 139 LE 140
E
Sbjct: 174 NE 175
>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
pdb|2I6K|B Chain B, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
Length = 235
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 34 GDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL---------I 84
G HR + ++F + +LLLQ+R+D K ++PG + + H + + L
Sbjct: 56 GLLHRAFSVFLF-NTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRR 114
Query: 85 SAQRELQEELGINL---PKDAFEFVFTFLQQNVINDGKFINNEFADVYLV---TTLNPIP 138
+AQR L+ ELGI L P + ++ T + +DG + +E + LV TLNP P
Sbjct: 115 AAQRRLKAELGIPLEEVPPEEINYL-TRIHYKAQSDGIWGEHEIDYILLVRXNVTLNPDP 173
Query: 139 LE 140
E
Sbjct: 174 NE 175
>pdb|1Q27|A Chain A, Nmr Solution Structure Of Dr0079: An Hypothetical Nudix
Protein From D. Radiodurans
pdb|2O5F|A Chain A, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
pdb|2O5F|B Chain B, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
Length = 171
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 46/177 (25%)
Query: 6 VQEEHLDVLTMTGQKTGI---TKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKD 62
V +E LD++ + G T P RV R VNA++ S +L + RR+ K
Sbjct: 4 VSDERLDLVNERDEVVGQILRTDPALRWERV----RVVNAFL-RNSQGQLWIPRRSPSKS 58
Query: 63 SWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFIN 122
+P D+S G + +G++ + +RE +EEL + + DA +
Sbjct: 59 LFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI--DALSWR---------------- 100
Query: 123 NEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGG 179
PL +F+ QT +S+ + YE L + P F P D++GG
Sbjct: 101 ---------------PLASFSPFQTTLSSFMCV-YE----LRSDATPIFNPNDISGG 137
>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase
2
Length = 246
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 34 GDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL---------I 84
G HR + +F + +L+Q+R+D K ++PG + S + H + L
Sbjct: 67 GLLHRAFSVVLF-NTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRR 125
Query: 85 SAQRELQEELGINLPKDAF---EFVF-TFLQQNVINDGKFINNEFADVYLV---TTLNPI 137
+AQR LQ ELGI P + + VF T +D + +E + LV TLNP
Sbjct: 126 AAQRRLQAELGI--PGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPD 183
Query: 138 PLEAFTL 144
P E ++
Sbjct: 184 PSETKSI 190
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 37 HRTVNAWIFAESTQELLLQ--RRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEEL 94
R N I + Q LLLQ RR W ++ G + AG+S L + +RE EE
Sbjct: 4 QRVTNC-IVVDHDQVLLLQKPRRG---------WWVAPGGKMEAGESILETVKREYWEET 53
Query: 95 GINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKY 154
GI + + +F+ + + ++GK ++ +++ T E L+Q+ +++
Sbjct: 54 GITVKNPELKGIFSMV---IFDEGKIVSE-----WMLFTFKATEHEGEMLKQSPEGKLEW 105
Query: 155 IAYEEYKNL 163
+E L
Sbjct: 106 KKKDEVLEL 114
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 44 IFAESTQE-LLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 98
I+A+ T+ L+LQRR D P W S G + G+++ +A RE++EE+ I++
Sbjct: 16 IYAQDTKRVLMLQRRDD-----PDFWQ-SVTGSVEEGETAPQAAMREVKEEVTIDV 65
>pdb|3T6B|A Chain A, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 2.4 Angstroms
pdb|3T6B|B Chain B, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 2.4 Angstroms
pdb|3T6J|A Chain A, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 3.0 Angstroms
Length = 726
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 11/180 (6%)
Query: 391 YDLYSVPYS---EEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSNN---YYDS 444
Y+ P+ +Y L + E L KA A++ ++L ++F + +
Sbjct: 237 YEFRGSPFQVTRGDYAPILQKVVEQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRG 296
Query: 445 DIAWIELDSEL-DVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLEQ 503
WI+ + + IG E+Y D FG + FE F+ + + +A+ + + + L +
Sbjct: 297 SRFWIQDKGPIVESYIGFIESYRDP-FGSRGEFEGFVAVVNKAMSAKFERLVASAEQLLK 355
Query: 504 NLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNV 563
LP ++ + + ++ +G N+PN + + + G V L NV
Sbjct: 356 ELPWPPTFEKDKFLTPDFTSLDVLTFAGS---GIPAGINIPNYDDLRQTEGFKNVSLGNV 412
>pdb|3FVY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iii
Length = 728
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 11/180 (6%)
Query: 391 YDLYSVPYS---EEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSNN---YYDS 444
Y+ P+ +Y L + E L KA A++ ++L ++F + +
Sbjct: 239 YEFRGSPFQVTRGDYAPILQKVVEQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRG 298
Query: 445 DIAWIELDSEL-DVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLEQ 503
WI+ + + IG E+Y D FG + FE F+ + + +A+ + + + L +
Sbjct: 299 SRFWIQDKGPIVESYIGFIESYRDP-FGSRGEFEGFVAVVNKAMSAKFERLVASAEQLLK 357
Query: 504 NLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNV 563
LP ++ + + ++ +G N+PN + + + G V L NV
Sbjct: 358 ELPWPPTFEKDKFLTPDFTSLDVLTFAGS---GIPAGINIPNYDDLRQTEGFKNVSLGNV 414
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLP 99
V A + +LL +R + K S G+W+ G + G++ S REL+EELG+++
Sbjct: 31 VVACALLDQDNRVLLTQRPEGK-SLAGLWEFP-GGKVEQGETPEASLIRELEEELGVHVQ 88
Query: 100 KDAFEFVFTF 109
D F TF
Sbjct: 89 ADNL-FPLTF 97
>pdb|2FKB|A Chain A, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
pdb|2FKB|B Chain B, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
pdb|2FKB|C Chain C, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
Length = 180
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 51 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL 110
++L+QRR + KD PG D ++ G + A + L SA+RE +EELGI A F F
Sbjct: 50 KILVQRRTETKDFLPGXLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFE 109
Query: 111 QQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEE 159
+N + ++ + P F LQ+ EVS V ++ EE
Sbjct: 110 DKNC--------RVWGALFSCVSHGP-----FALQEDEVSEVCWLTPEE 145
>pdb|3N77|A Chain A, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
pdb|3N77|B Chain B, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
Length = 144
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 53 LLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 98
LL + AD + +PG W +S G + G+ + +RE++EELG L
Sbjct: 21 LLCKMADNRGVFPGQWALSGGG-VEPGERIEEALRREIREELGEQL 65
>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
pdb|3OGA|B Chain B, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
Length = 165
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 53 LLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 98
LL + AD + +PG W +S G + G+ + +RE++EELG L
Sbjct: 42 LLCKMADNRGVFPGQWALSGGG-VEPGERIEEALRREIREELGEQL 86
>pdb|2G7K|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin,
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7K|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin,
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7N|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
Length = 425
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSL-SGHIVDATNHSVGSIYDL 393
+DK++F+ LTE ED +FF VI R++ N D ++ +IV N+++ ++L
Sbjct: 332 VDKLKFDKLYKMLTEIYTEDNFVNFFKVINRKTYLNFDKAVFRINIVPDENYTIKDGFNL 391
Query: 394 YSVPYSEEYNS 404
S +N
Sbjct: 392 KGANLSTNFNG 402
>pdb|1E1H|B Chain B, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase.
pdb|1E1H|D Chain D, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase
Length = 174
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 317 YKASFPLPKPPGANFYPPDMDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSL 375
+K + L + F +DK++F+ LTE ED +FF VI R++ N D ++
Sbjct: 67 FKEKYLLSEDTSGKF---SVDKLKFDKLYKMLTEIYTEDNFVNFFKVINRKTYLNFDKAV 123
Query: 376 -SGHIVDATNHSVGSIYDLYSVPYSEEYN 403
+IV N+++ ++L S +N
Sbjct: 124 FRINIVPDENYTIKDGFNLKGANLSTNFN 152
>pdb|3DS9|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
pdb|3DSE|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
Length = 417
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 333 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 392
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 393 RNTNLAANFNGQNTEINNM 411
>pdb|3BWI|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With An Acetate Ion Bound At The
Active Site
pdb|3C88|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgc
pdb|3C89|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgm
pdb|3C8A|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgl
pdb|3C8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgi
Length = 432
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 333 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 392
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 393 RNTNLAANFNGQNTEINNM 411
>pdb|2ILP|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2ILP|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2IMA|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMA|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMB|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMB|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMC|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
pdb|2IMC|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
Length = 444
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 353 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 412
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 413 RNTNLAANFNGQNTEINNM 431
>pdb|3NF3|A Chain A, Crystal Structure Of BontA LC WITH JTH-Nb-7239 Peptide
Length = 425
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 333 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 392
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 393 RNTNLAANFNGQNTEINNM 411
>pdb|3BOK|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A Apo-
Enzyme
pdb|3BON|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
Zn2+ Cofactor Bound
pdb|3BOO|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
An Inhibitory Peptide Bound
Length = 425
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 333 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 392
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 393 RNTNLAANFNGQNTEINNM 411
>pdb|2ISE|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISE|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISG|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISG|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISH|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
pdb|2ISH|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
Length = 421
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 332 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 391
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 392 RNTNLAANFNGQNTEINNM 410
>pdb|4EJ5|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA WILD-Type
Length = 445
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 353 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 412
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 413 RNTNLAANFNGQNTEINNM 431
>pdb|3DDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Snap-25 Peptide
pdb|3DDB|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Substrate Analog Peptide
pdb|3QW5|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrgf
pdb|3QW6|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rygc
pdb|3QW7|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrfc
pdb|3QW8|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Crgc
Length = 430
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 333 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 392
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 393 RNTNLAANFNGQNTEINNM 411
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSL-SGHIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 334 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 393
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 394 RNTNLAANFNGQNTEINNM 412
>pdb|3QIX|A Chain A, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIX|B Chain B, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIY|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-1
pdb|3QIZ|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-2
pdb|3QJ0|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-3
Length = 430
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 333 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 392
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 393 RNTNLAANFNGQNTEINNM 411
>pdb|4HEV|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
pdb|4HEV|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
Length = 441
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 349 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 408
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 409 RNTNLAANFNGQNTEINNM 427
>pdb|4ELC|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134 MUTANT WITH MTSEA MODIFIED CYS-165
Length = 445
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 353 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 412
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 413 RNTNLAANFNGQNTEINNM 431
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSL-SGHIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 332 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 391
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 392 RNTNLAANFNGQNTEINNM 410
>pdb|2W2D|A Chain A, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
pdb|2W2D|C Chain C, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
Length = 450
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 337 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 396
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 397 RNTNLAANFNGQNTEINNM 415
>pdb|4EL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134SC165S DOUBLE MUTANT
Length = 445
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSLSG-HIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 353 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 412
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 413 RNTNLAANFNGQNTEINNM 431
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 336 MDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSL-SGHIVDATNHSVGSIYDL 393
+DK++F+ LTE ED FF V+ R++ N D ++ +IV N+++ ++L
Sbjct: 336 VDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNL 395
Query: 394 YSVPYSEEYNSYLTRASEL 412
+ + +N T + +
Sbjct: 396 RNTNLAANFNGQNTEINNM 414
>pdb|3LJK|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis.
pdb|3M5P|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Fructose-6-Phosphate
Length = 543
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 28/147 (19%)
Query: 210 AHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYLQVWYSNPVLRDWLKEH-------- 261
++V ++ L L D E +L+I + + E + ++ R+WL +H
Sbjct: 176 SNVDADSLLQALHVVDPETTLLIIASKSFSTE----ETLLNSISAREWLLDHYEDEKAVA 231
Query: 262 ----ADASELDKLK------------WMYYLINKSPWSSLDENEAFLTTADSAVKLLPDA 305
A +S+LDK+K W + S WSS+ + AF D+ KLL A
Sbjct: 232 NHFVAISSKLDKVKEFGIDLEHCYKXWDWVGGRYSLWSSIGXSIAFAIGYDNFEKLLAGA 291
Query: 306 TKPVNGWKGLEYKASFPLPKPPGANFY 332
+K E+ + P+ A++Y
Sbjct: 292 YSVDKHFKETEFSKNIPVIXALLASYY 318
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 561 KNVSEAKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHECCHGIGPHSITLPDGRQST 620
+N +E F +++R I + K VD F H H+ H + IT ++
Sbjct: 338 ENYAENDFYDLVRTIGGDLVEK-----VDLIDKFVHPKTHKTSHC---YRITYRHMERTL 389
Query: 621 VRLELQELHSAMEEAKADIVGL 642
+ E++ +H A++EA ++G+
Sbjct: 390 SQREVRHIHQALQEAAVQLLGV 411
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 87/199 (43%), Gaps = 21/199 (10%)
Query: 262 ADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASF 321
A ASE L+++ +P+++ E F A+ + D +K ++ L S
Sbjct: 211 ATASEAAPLQYL------APFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQL----SL 260
Query: 322 PLPKPPGANFYPPDMDKMEFELWK--SSLTEKQQEDATSFFTVIKRRSEFNLDSSLSGHI 379
L +PPG YP D+ + L + + L+EK+ + + VI+ + ++ + + ++
Sbjct: 261 LLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGG-DVSAYIPTNV 319
Query: 380 VDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSN 439
+ T+ + +L+ N L+ + + G A +LK++ S FL+
Sbjct: 320 ISITDGQIFLEAELFYKGIRPAINVGLS-----VSRVGSAAQVKALKQVAGS-LKLFLAQ 373
Query: 440 NYYDSDIAWIELDSELDVT 458
Y A+ + S+LD +
Sbjct: 374 --YREVAAFAQFGSDLDAS 390
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 87/199 (43%), Gaps = 21/199 (10%)
Query: 262 ADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASF 321
A ASE L+++ +P+++ E F A+ + D +K ++ L S
Sbjct: 212 ATASEAAPLQYL------APFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQL----SL 261
Query: 322 PLPKPPGANFYPPDMDKMEFELWK--SSLTEKQQEDATSFFTVIKRRSEFNLDSSLSGHI 379
L +PPG YP D+ + L + + L+EK+ + + VI+ + ++ + + ++
Sbjct: 262 LLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGG-DVSAYIPTNV 320
Query: 380 VDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSN 439
+ T+ + +L+ N L+ + + G A +LK++ S FL+
Sbjct: 321 ISITDGQIFLEAELFYKGIRPAINVGLS-----VSRVGSAAQVKALKQVAGS-LKLFLAQ 374
Query: 440 NYYDSDIAWIELDSELDVT 458
Y A+ + S+LD +
Sbjct: 375 --YREVAAFAQFGSDLDAS 391
>pdb|3K3Q|C Chain C, Crystal Structure Of A Llama Antibody Complexed With The
C. Botulinum Neurotoxin Serotype A Catalytic Domain
Length = 175
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 317 YKASFPLPKPPGANFYPPDMDKMEFELWKSSLTEKQQEDA-TSFFTVIKRRSEFNLDSSL 375
+K + L + F +DK++F+ LTE ED FF V+ R++ N D ++
Sbjct: 67 FKEKYLLSEDTSGKF---SVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAV 123
Query: 376 SG-HIVDATNHSVGSIYDLYSVPYSEEYN 403
+IV N+++ ++L + + +N
Sbjct: 124 FKINIVPKVNYTIYDGFNLRNTNLAANFN 152
>pdb|3Q88|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Ribose 1,5-Bisphosphate.
pdb|3Q7I|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With 6-Phosphogluconic Acid
Length = 543
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 28/147 (19%)
Query: 210 AHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYLQVWYSNPVLRDWLKEH-------- 261
++V ++ L L D E +L+I + + E + ++ R+WL +H
Sbjct: 176 SNVDADSLLQALHVVDPETTLLIIASKSFSTE----ETLLNSISAREWLLDHYEDEKAVA 231
Query: 262 ----ADASELDKLK------------WMYYLINKSPWSSLDENEAFLTTADSAVKLLPDA 305
A +S+LDK+K W + S WSS+ + AF D+ KLL A
Sbjct: 232 NHFVAISSKLDKVKEFGIDLEHCYKMWDWVGGRYSLWSSIGMSIAFAIGYDNFEKLLAGA 291
Query: 306 TKPVNGWKGLEYKASFPLPKPPGANFY 332
+K E+ + P+ A++Y
Sbjct: 292 YSVDKHFKETEFSKNIPVIMALLASYY 318
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 72 SAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV---INDGKFINNEFADV 128
+ GH L A +EL+EE G+ P + F V I GK++++ +
Sbjct: 74 TGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLH-L 132
Query: 129 YLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNIIS 188
L + E L++ E S V +I + E + +P +P Y +L N +
Sbjct: 133 NLTYLIECSEDETLXLKEDENSGVXWIPFNEISKYCS--EPHXIPI-----YEKLINKLK 185
Query: 189 QRYKE 193
+ KE
Sbjct: 186 TQSKE 190
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 87/199 (43%), Gaps = 21/199 (10%)
Query: 262 ADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASF 321
A ASE L+++ +P+++ E F A+ + D +K ++ L S
Sbjct: 236 ATASEAAPLQYL------APFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQL----SL 285
Query: 322 PLPKPPGANFYPPDMDKMEFELWK--SSLTEKQQEDATSFFTVIKRRSEFNLDSSLSGHI 379
L +PPG YP D+ + L + + L+EK+ + + VI+ + ++ + + ++
Sbjct: 286 LLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGG-DVSAYIPTNV 344
Query: 380 VDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSN 439
+ T+ + +L+ N L+ + + G A +LK++ S FL+
Sbjct: 345 ISITDGQIFLEAELFYKGIRPAINVGLS-----VSRVGSAAQVKALKQVAGS-LKLFLAQ 398
Query: 440 NYYDSDIAWIELDSELDVT 458
Y A+ + S+LD +
Sbjct: 399 --YREVAAFAQFGSDLDAS 415
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 262 ADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASF 321
A ASE L+++ +P+++ E F A+ + D +K ++ L S
Sbjct: 271 ATASEAAPLQYL------APFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQL----SL 320
Query: 322 PLPKPPGANFYPPDMDKMEFELWK--SSLTEKQQEDATSFFTVIK 364
L +PPG YP D+ + L + + L+EK+ + + VI+
Sbjct: 321 LLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIE 365
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 262 ADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASF 321
A ASE L+++ +P+++ E F A+ + D +K ++ L S
Sbjct: 236 ATASEAAPLQYL------APFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQL----SL 285
Query: 322 PLPKPPGANFYPPDMDKMEFELWK--SSLTEKQQEDATSFFTVIK 364
L +PPG YP D+ + L + + L+EK+ + + VI+
Sbjct: 286 LLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIE 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,790,337
Number of Sequences: 62578
Number of extensions: 952377
Number of successful extensions: 2596
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2576
Number of HSP's gapped (non-prelim): 59
length of query: 779
length of database: 14,973,337
effective HSP length: 106
effective length of query: 673
effective length of database: 8,340,069
effective search space: 5612866437
effective search space used: 5612866437
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)