BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004012
(779 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L831|NUDT3_ARATH Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1
Length = 772
Score = 1207 bits (3122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/773 (73%), Positives = 667/773 (86%), Gaps = 2/773 (0%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+ EEH DVLT +G+KTG++KPR EVHR GDYHR V+ WIF E+TQ+LLLQ R+D KDSWP
Sbjct: 1 MAEEHFDVLTKSGEKTGVSKPRGEVHRDGDYHRAVHVWIFVETTQQLLLQLRSDDKDSWP 60
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G WDISSAGHISAGD+SL+SAQREL+EELG+ LPKDAFE +F FLQ+ V NDGKFINNEF
Sbjct: 61 GQWDISSAGHISAGDTSLLSAQRELEEELGVKLPKDAFEKIFVFLQECVTNDGKFINNEF 120
Query: 126 ADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFN 185
DVYLVT L+PIPLEAFTLQ+ EVSAVKY+ YEEY+N L+K+DP++VPYDVNG YG+LF+
Sbjct: 121 NDVYLVTILHPIPLEAFTLQKEEVSAVKYVPYEEYRNFLSKEDPAYVPYDVNGEYGKLFD 180
Query: 186 IISQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYL 245
II QR + NT RSL+LQKQL+RY+ V+L A+L LS+AD++AL L++KAA +MD+IFY
Sbjct: 181 IIRQRCQVNTEARSLSLQKQLQRYSPVTLEAKLTELSEADQKALGLIVKAAKIMDDIFYE 240
Query: 246 QVWYSNPVLRDWLKEHADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDA 305
QVW SNP LRDWLK+HA+AS+LDKLKW Y+ INKSPWSSLDENEAFL+TADSAVKLLP A
Sbjct: 241 QVWNSNPALRDWLKDHANASKLDKLKWDYFTINKSPWSSLDENEAFLSTADSAVKLLPGA 300
Query: 306 TKPVNGWKGLEYKASFPLPKPPGANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKR 365
TK + GWKGLEY+A+FP+ KPPGANFYPPDMDKMEF LW + LTE+Q+ AT FF+VIKR
Sbjct: 301 TKAIAGWKGLEYRAAFPVTKPPGANFYPPDMDKMEFTLWLNGLTEEQKHAATGFFSVIKR 360
Query: 366 RSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSL 425
RSE NLD+S H+ +T S DLYS+PYSE Y +L +ASE L KAGD+ SSPSL
Sbjct: 361 RSEANLDAS--DHLASSTKKLPDSNSDLYSIPYSEIYRPFLKKASEFLQKAGDLVSSPSL 418
Query: 426 KRLLHSKADAFLSNNYYDSDIAWIELDSELDVTIGPYETYEDAIFGYKATFEAFIGIRDD 485
K+LLHSKA+AFLSN YY+SDIAW++LDS+LD+TIGPYETYED IFGYKATFE FIGIRDD
Sbjct: 419 KKLLHSKAEAFLSNEYYESDIAWMDLDSKLDITIGPYETYEDEIFGYKATFETFIGIRDD 478
Query: 486 KATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPN 545
KATA +KLFGDNL++LE NLP+++ YKS DV AAPIRVIQLIYNSGDVKGPQTVA+NLPN
Sbjct: 479 KATADLKLFGDNLKLLEDNLPLESVYKSTDVSAAPIRVIQLIYNSGDVKGPQTVAYNLPN 538
Query: 546 DERIVKDRGTSMVMLKNVSEAKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHECCHG 605
DE+IVKDRGTSMVMLKNV EAKF++IL+PIA++ I KEQ+ LVDFDSFFTH ICHECCHG
Sbjct: 539 DEKIVKDRGTSMVMLKNVQEAKFEHILKPIAEITISKEQRGLVDFDSFFTHTICHECCHG 598
Query: 606 IGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWALKFLIGRDLLPKSLVKSMYVS 665
IGPH+ITLP G+ STVR ELQE+HSAMEEAKADIVGLWALKFLI + LL KS+V+SMYVS
Sbjct: 599 IGPHTITLPGGQTSTVRKELQEVHSAMEEAKADIVGLWALKFLITKGLLSKSMVESMYVS 658
Query: 666 FLAGCFRSVRFGLEESHGKGQALQFNWLFEKEAFILHSDDTFSVDFDKVEGAVESLSTEI 725
FLAGCFRS+RFGL E+HGKGQALQFN+L+EK AF+ H D TFSVDF K+EGAVESLS EI
Sbjct: 659 FLAGCFRSIRFGLTEAHGKGQALQFNYLYEKGAFVFHEDSTFSVDFAKIEGAVESLSHEI 718
Query: 726 LTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIAPTFTAVNKLL 778
LTIQ +GDK AA+LLL KYCT+T PLK AL+ LE V+VPVDI+PTF L+
Sbjct: 719 LTIQGKGDKNAATLLLNKYCTITGPLKTALENLERVKVPVDISPTFPLAEALM 771
>sp|Q97LV8|Y446_CLOAB Uncharacterized Nudix hydrolase CA_C0446 OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=CA_C0446 PE=3 SV=1
Length = 206
Score = 86.3 bits (212), Expect = 9e-16, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 18/191 (9%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQE--LLLQRRADFKDS 63
++EE LD+ + G K R EVH G +H T + W+ ++ L+ Q+R KD+
Sbjct: 1 MEEEFLDIFDEEERLIG-RKSRKEVHEKGYWHSTFHCWVVKREGKKTFLIFQKRHPLKDT 59
Query: 64 WPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINN 123
P M+D+SSAGHI +G+ S+ REL+EELGI+ + E + + + + GK I+
Sbjct: 60 APNMFDVSSAGHIKSGE-SIEDGVRELKEELGIDAKPN--ELINIGIIKEEFHIGKNIDR 116
Query: 124 EFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQL 183
EF +Y+ + N +E++TLQ+ EV + I +E LA+ F+ ++G + +
Sbjct: 117 EFCHIYIYS--NKAEIESYTLQRDEVVGLVKIEIDE----LAR----FLDNKIDGVFAEG 166
Query: 184 F--NIISQRYK 192
F N +RYK
Sbjct: 167 FIVNQEGRRYK 177
>sp|Q8Y9Z9|Y368_LISMO Uncharacterized Nudix hydrolase lmo0368 OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo0368
PE=3 SV=1
Length = 169
Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 18/178 (10%)
Query: 9 EHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMW 68
E D+L + TG T R E G+ H ++ IF E Q LL+Q+R K+ WP W
Sbjct: 2 EEWDLLNENRELTGKTHIRGEKLAPGELHLVIHVCIFNEKGQ-LLIQKRQKDKEGWPNYW 60
Query: 69 DISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADV 128
D+S+AG G++S +A+RE+QEELGI + F++ F D
Sbjct: 61 DLSAAGSALKGETSQQAAEREVQEELGIMIDLSGTRAKFSY----------HFEEGFDDY 110
Query: 129 YLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNI 186
+ +T + L TLQ+ EV+ +++ EE + L + F+PY QLFN+
Sbjct: 111 WFIT--KDVQLSDLTLQKEEVADARFVTKEELEAL--RSSGEFIPYFF---LNQLFNL 161
>sp|Q92ES1|Y387_LISIN Uncharacterized Nudix hydrolase lin0387 OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=lin0387 PE=3 SV=1
Length = 169
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 9 EHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMW 68
E D+L + T T R E G+ H V+ IF E Q LL+Q+R K+ WP W
Sbjct: 2 EEWDLLNENRELTRKTHIRGEKLAPGELHLVVHVCIFNEKGQ-LLIQKRQKDKEGWPNYW 60
Query: 69 DISSAGHISAGDSSLISAQRELQEELG--INLPKDAFEFVFTFLQQNVINDGKFINNEFA 126
D+S+AG G++S +A+RE++EELG I+L +F + F F
Sbjct: 61 DLSAAGSALKGETSRQAAEREVKEELGMTIDLSNTRAKFSYHF------------EAGFD 108
Query: 127 DVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 174
D + +T + L TLQ EV+ V+++ E+ + L + F+PY
Sbjct: 109 DYWFIT--KDVELSDLTLQTEEVADVRFVTKEKLEAL--RSSGEFIPY 152
>sp|Q6D3F5|IDI_ERWCT Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=idi PE=3 SV=1
Length = 179
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
Query: 21 TGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGD 80
TG+ + + E H G+ HR + +IF S Q+LLLQ+RA+ K G+W + H + G+
Sbjct: 16 TGVME-KQEAHVKGELHRAITVYIF-NSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGE 73
Query: 81 SSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYL-----VTTLN 135
+L +A R L EE+G+ + A +FT + +++G I +E VY V +N
Sbjct: 74 ETLQAAHRRLYEEMGL---RCALTPMFTLTYRLQLDNG-LIEHELGHVYFGVTDDVPQIN 129
Query: 136 PIPLEAFTLQ 145
P + ++ Q
Sbjct: 130 PDEVSSYEYQ 139
>sp|A8GDW2|IDI_SERP5 Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans
(strain 568) GN=idi PE=3 SV=1
Length = 179
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 24 TKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL 83
++ ++ VH+ G HR + +IF +S LLLQ+RA K G+W S GH G+S+L
Sbjct: 17 SQSKTRVHQQGLLHRAFSIFIF-DSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTL 75
Query: 84 ISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYL 130
+AQR LQEE+G + + V +F Q + G I +EF +Y+
Sbjct: 76 AAAQRRLQEEMGFSAE---LQQVSSFTYQAAV-PGDLIEHEFDHIYV 118
>sp|Q9HUW9|Y4841_PSEAE Uncharacterized Nudix hydrolase PA4841 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4841 PE=3 SV=2
Length = 169
Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 26 PRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLIS 85
PR+E+ G R +F S EL +QRR K +PG WD+++ G + AG+ S
Sbjct: 26 PRAELRERGLIGRGTFILLF-NSAGELCVQRRTLSKAVYPGYWDLAAGGMVQAGEPYADS 84
Query: 86 AQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQ 145
A REL+EELGI +DA L+++ G+F +E + + + LQ
Sbjct: 85 AARELEEELGI---RDA------VLREH----GRFFFDEPGNRLWCAVFSAVSDAPLRLQ 131
Query: 146 QTEVSAVKYIAYEEYKNLLAKDDPSFVPY 174
E+S ++I E LA ++ +PY
Sbjct: 132 AEEISEARFIRPE-----LALEEARSLPY 155
>sp|Q7X5H2|IDI_CITFR Isopentenyl-diphosphate Delta-isomerase OS=Citrobacter freundii
GN=idi PE=3 SV=1
Length = 182
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+++E + +L GQ G + + H + WIF E Q LL+ RR+ K +WP
Sbjct: 1 MRQERVILLNEQGQPCGTLEKYAAHTATTPLHSAFSCWIFNEQGQ-LLVTRRSLHKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+++ + R ELG ++ D+ V+T + + + NE
Sbjct: 60 GVWTNSVCGHPQLGETTEAAINRRACFELGADI--DSLSPVYTDFRYCATDPSGIVENEV 117
Query: 126 ADVY 129
VY
Sbjct: 118 CPVY 121
>sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI
PE=3 SV=1
Length = 251
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL---------ISAQ 87
HR + ++F S LLLQRRAD K ++PGMW + H + + +A
Sbjct: 66 HRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAAS 125
Query: 88 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 144
R+L+ ELG+ + P D+F ++ T + +DG + +E + TT P E T
Sbjct: 126 RKLEHELGVPTSSTPPDSFTYL-TRIHYLAPSDGLWGEHEIDYILFSTT----PTE-HTG 179
Query: 145 QQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 174
EVS +Y+ E + + + SF P+
Sbjct: 180 NPNEVSDTRYVTKPELQAMFEDESNSFTPW 209
>sp|Q0TDW3|IDI_ECOL5 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=idi PE=3 SV=1
Length = 182
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
GMW S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GMWTNSVCGHPQLGESNEEAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTTLNPIPL---EAFTLQQTEVSAV 152
V+ T + + + E Q +++AV
Sbjct: 118 CPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|B7UHT8|IDI_ECO27 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=idi PE=3 SV=1
Length = 182
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNAEAVIRRCRYELGVEITPP--ESIYPGFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTTLNPIPL---EAFTLQQTEVSAV 152
V+ T + + + E Q +++AV
Sbjct: 118 CPVFAALTTSALQINDDEVMDYQWCDLAAV 147
>sp|P72002|IDI_MYCTU Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis GN=idi PE=3 SV=1
Length = 203
Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 9 EHLDVLTMTGQKTGITKPRSEVHRVGD--YHRTVNAWIFAESTQELLLQRRADFKDSWPG 66
E + +L G TG+ ++ VH GD H ++++F + +LL+ RRA K +WP
Sbjct: 12 ERVVLLNDRGDATGVAD-KATVH-TGDTPLHLAFSSYVF-DLHDQLLITRRAATKRTWPA 68
Query: 67 MWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFT-FLQQNVINDGKFINNEF 125
+W S GH G+S + +R L ELG L D + + F + + DG + NE
Sbjct: 69 VWTNSCCGHPLPGESLPGAIRRRLAAELG--LTPDRVDLILPGFRYRAAMADGT-VENEI 125
Query: 126 ADVYLVTT-LNPIPLEAFTLQQTEVSAVKYIAYEEY 160
VY V P P EV A++++++E++
Sbjct: 126 CPVYRVQVDQQPRP------NSDEVDAIRWLSWEQF 155
>sp|A5U3A5|IDI_MYCTA Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=idi PE=3
SV=1
Length = 203
Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 9 EHLDVLTMTGQKTGITKPRSEVHRVGD--YHRTVNAWIFAESTQELLLQRRADFKDSWPG 66
E + +L G TG+ ++ VH GD H ++++F + +LL+ RRA K +WP
Sbjct: 12 ERVVLLNDRGDATGVAD-KATVH-TGDTPLHLAFSSYVF-DLHDQLLITRRAATKRTWPA 68
Query: 67 MWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFT-FLQQNVINDGKFINNEF 125
+W S GH G+S + +R L ELG L D + + F + + DG + NE
Sbjct: 69 VWTNSCCGHPLPGESLPGAIRRRLAAELG--LTPDRVDLILPGFRYRAAMADGT-VENEI 125
Query: 126 ADVYLVTT-LNPIPLEAFTLQQTEVSAVKYIAYEEY 160
VY V P P EV A++++++E++
Sbjct: 126 CPVYRVQVDQQPRP------NSDEVDAIRWLSWEQF 155
>sp|C1AP18|IDI_MYCBT Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=idi
PE=3 SV=1
Length = 176
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 9 EHLDVLTMTGQKTGITKPRSEVHRVGD--YHRTVNAWIFAESTQELLLQRRADFKDSWPG 66
E + +L G TG+ ++ VH GD H ++++F + +LL+ RRA K +WP
Sbjct: 12 ERVVLLNDRGDATGVAD-KATVH-TGDTPLHLAFSSYVF-DLHDQLLITRRAATKRTWPA 68
Query: 67 MWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFT-FLQQNVINDGKFINNEF 125
+W S GH G+S + +R L ELG L D + + F + + DG + NE
Sbjct: 69 VWTNSCCGHPLPGESLPGAIRRRLAAELG--LTPDRVDLILPGFRYRAAMADGT-VENEI 125
Query: 126 ADVYLVTT-LNPIPLEAFTLQQTEVSAVKYIAYEEY 160
VY V P P EV A++++++E++
Sbjct: 126 CPVYRVQVDQQPRP------NSDEVDAIRWLSWEQF 155
>sp|A1KJG2|IDI_MYCBP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=idi PE=3 SV=1
Length = 176
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 9 EHLDVLTMTGQKTGITKPRSEVHRVGD--YHRTVNAWIFAESTQELLLQRRADFKDSWPG 66
E + +L G TG+ ++ VH GD H ++++F + +LL+ RRA K +WP
Sbjct: 12 ERVVLLNDRGDATGVAD-KATVH-TGDTPLHLAFSSYVF-DLHDQLLITRRAATKRTWPA 68
Query: 67 MWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFT-FLQQNVINDGKFINNEF 125
+W S GH G+S + +R L ELG L D + + F + + DG + NE
Sbjct: 69 VWTNSCCGHPLPGESLPGAIRRRLAAELG--LTPDRVDLILPGFRYRAAMADGT-VENEI 125
Query: 126 ADVYLVTT-LNPIPLEAFTLQQTEVSAVKYIAYEEY 160
VY V P P EV A++++++E++
Sbjct: 126 CPVYRVQVDQQPRP------NSDEVDAIRWLSWEQF 155
>sp|Q6A5Z1|IDI_PROAC Isopentenyl-diphosphate Delta-isomerase OS=Propionibacterium acnes
(strain KPA171202 / DSM 16379) GN=idi PE=3 SV=1
Length = 199
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 2/154 (1%)
Query: 24 TKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL 83
T PR+ VH + + +L+ RRA K +WPG+W + GH G++ +
Sbjct: 33 TAPRATVHSQHTPRHLAFSCHVLDVGGRVLVTRRALTKVAWPGVWTNTCCGHPRVGETII 92
Query: 84 ISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFT 143
+A R +ELG++L V + G + +EF V + P L
Sbjct: 93 DAAVRRTHQELGLDLDPRRMRVVLPDFSYRATDSGGIVEDEFCPVVVARLSLPEELVELN 152
Query: 144 LQQTEVSAVKYIAYEEYKNLLAKDDPSFV-PYDV 176
EV V ++ +++ + LA+ P+ + P+ V
Sbjct: 153 PDPDEVEEVAWVGWQDMYD-LARSMPALLSPWAV 185
>sp|B7N7D3|IDI_ECOLU Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + A E V+ + + + NE
Sbjct: 60 GVWTNSVCGHPQMGESNEDAVIRRCRFELGVEI--TAPEPVYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q1R7E2|IDI_ECOUT Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
UTI89 / UPEC) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEEAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTTLNPIPL---EAFTLQQTEVSAV 152
V+ T + + + E Q +++AV
Sbjct: 118 CPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|A1AF79|IDI_ECOK1 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O1:K1 /
APEC GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEEAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTTLNPIPL---EAFTLQQTEVSAV 152
V+ T + + + E Q +++AV
Sbjct: 118 CPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|B7MZ42|IDI_ECO81 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O81
(strain ED1a) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEEAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTTLNPIPL---EAFTLQQTEVSAV 152
V+ T + + + E Q +++AV
Sbjct: 118 CPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|B7MM76|IDI_ECO45 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEEAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTTLNPIPL---EAFTLQQTEVSAV 152
V+ T + + + E Q +++AV
Sbjct: 118 CPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|Q46822|IDI_ECOLI Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
K12) GN=idi PE=1 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|B1XEH6|IDI_ECODH Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
K12 / DH10B) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|C5A0G1|IDI_ECOBW Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
K12 / MC4100 / BW2952) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q3YXY0|IDI_SHISS Isopentenyl-diphosphate Delta-isomerase OS=Shigella sonnei (strain
Ss046) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q32BV2|IDI_SHIDS Isopentenyl-diphosphate Delta-isomerase OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|B7LYF3|IDI_ECO8A Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O8
(strain IAI1) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|B5YQ81|IDI_ECO5E Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q8XD58|IDI_ECO57 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O157:H7
GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|A7ZQZ8|IDI_ECO24 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|B7NW30|IDI_ECO7I Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O7:K1
(strain IAI39 / ExPEC) GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + A E V+ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRFELGVEI--TAPEPVYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q83MJ9|IDI_SHIFL Isopentenyl-diphosphate Delta-isomerase OS=Shigella flexneri GN=idi
PE=3 SV=1
Length = 182
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+SS + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESSEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPRGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q0T107|IDI_SHIF8 Isopentenyl-diphosphate Delta-isomerase OS=Shigella flexneri
serotype 5b (strain 8401) GN=idi PE=3 SV=1
Length = 182
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+SS + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESSEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPRGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic
OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1
Length = 284
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 19/144 (13%)
Query: 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 87
HR + ++F S ELLLQ+R++ K ++P +W + H +S LI +AQ
Sbjct: 104 HRAFSVFLF-NSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQ 162
Query: 88 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 144
R+L +ELGI ++P D F + L + +DGK+ +E YL+ + + ++
Sbjct: 163 RKLLDELGIVAEDVPVDEFTPLGRMLYK-APSDGKWGEHELD--YLLFIVRDVKVQP--- 216
Query: 145 QQTEVSAVKYIAYEEYKNLLAKDD 168
EV+ +KY++ EE K L+ K D
Sbjct: 217 NPDEVAEIKYVSREELKELVKKAD 240
>sp|Q8FE75|IDI_ECOL6 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=idi PE=3 SV=1
Length = 182
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEEAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|B1ITB3|IDI_ECOLC Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
ATCC 8739 / DSM 1576 / Crooks) GN=idi PE=3 SV=1
Length = 182
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPSGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|B1LR71|IDI_ECOSM Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=idi PE=3 SV=1
Length = 182
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q31WF1|IDI_SHIBS Isopentenyl-diphosphate Delta-isomerase OS=Shigella boydii serotype
4 (strain Sb227) GN=idi PE=3 SV=1
Length = 182
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|B6I722|IDI_ECOSE Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
SE11) GN=idi PE=3 SV=1
Length = 182
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+S+ + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic
OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3
Length = 291
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 19/144 (13%)
Query: 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 87
HR + ++F S ELLLQ+R+ K ++P +W + H +S LI +AQ
Sbjct: 111 HRAFSVFLF-NSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQ 169
Query: 88 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 144
R+L +ELGI ++P D F + L + +DGK+ +E YL+ + + L+
Sbjct: 170 RKLFDELGIVAEDVPVDEFTPLGRMLYK-APSDGKWGEHEVD--YLLFIVRDVKLQP--- 223
Query: 145 QQTEVSAVKYIAYEEYKNLLAKDD 168
EV+ +KY++ EE K L+ K D
Sbjct: 224 NPDEVAEIKYVSREELKELVKKAD 247
>sp|Q7VEU0|IDI_MYCBO Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=idi PE=3 SV=1
Length = 176
Score = 53.5 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 9 EHLDVLTMTGQKTGITKPRSEVHRVGD--YHRTVNAWIFAESTQELLLQRRADFKDSWPG 66
E + +L G TG+ ++ VH GD H ++++ ++ +LL+ RRA K +WP
Sbjct: 12 ERVVLLNDRGDATGVAD-KATVH-TGDTPLHLAFSSYV-SDLHDQLLITRRAATKRTWPA 68
Query: 67 MWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFT-FLQQNVINDGKFINNEF 125
+W S GH G+S + +R L ELG L D + + F + + DG + NE
Sbjct: 69 VWTNSCCGHPLPGESLPGAIRRRLAAELG--LTPDRVDLILPGFRYRAAMADGT-VENEI 125
Query: 126 ADVYLVTT-LNPIPLEAFTLQQTEVSAVKYIAYEEY 160
VY V P P EV A++++++E++
Sbjct: 126 CPVYRVQVDQQPRP------NSDEVDAIRWLSWEQF 155
>sp|Q0RBQ7|IDI_FRAAA Isopentenyl-diphosphate Delta-isomerase OS=Frankia alni (strain
ACN14a) GN=idi PE=3 SV=1
Length = 194
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Query: 24 TKPRSEVHRVGD-YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSS 82
T PR VH + H ++++F ++ LL+ RRA K +WPG+W S GH G+
Sbjct: 28 TAPRLAVHGLDTPLHLAFSSYLF-DAAGRLLVTRRALGKRTWPGVWTNSCCGHPRPGEDI 86
Query: 83 LISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTL-NPIPLEA 141
++ +R + +EL + L D + F + DG + NE VY+ + +P P A
Sbjct: 87 ALAVERRVDQELRLAL-TDLHCALPDFAYRATAADG-LVENEVCPVYVARAVGDPDPDPA 144
Query: 142 FTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVN--GGYGQ 182
EV +++ +E Y+ + P+ V+ +GQ
Sbjct: 145 ------EVVEWRWVDWESYRQAALAAPWALSPWSVDQMTAFGQ 181
>sp|A7RZW4|DPP3_NEMVE Dipeptidyl peptidase 3 OS=Nematostella vectensis GN=dpp3 PE=3 SV=1
Length = 729
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 163/411 (39%), Gaps = 57/411 (13%)
Query: 288 NEAFLTTADSAVKLLPDATKPVNGWKGLEYKASFPLPKPPGANFYPPDMDKMEFELWKSS 347
++A+ T A S V L D + + K + F + + +Y + +K + E +
Sbjct: 137 SQAYATNAKSVVTLWSDCCEAMYSLKPKLRQLGFG--EQGISTYYSSNCNKSDAEFIQGF 194
Query: 348 LTEKQQED-ATSFFTVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSY- 405
L EK E T F I + + L+ + A + S D+ S+ S EY
Sbjct: 195 LKEKNIEGWNTRLFKEINDKGHVTYNLRLASTALSAEDCSAEKKDDVASLVKSYEYQGTT 254
Query: 406 --LTRA--SELLHKAGD-------MASSPSLKRLLHSKADAFLSNN---YYDSDIAWI-E 450
+TR + LL K D AS+ + +L +F + + + D WI +
Sbjct: 255 VKITRGDYAGLLKKVVDNLIMAKGFASNENEVAMLDHYVHSFTTGSVEAHKDGSRHWIRD 314
Query: 451 LDSELDVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPMDNA 510
++ IG E+Y D FG +A +E F+ I + +A+ + + L LP ++
Sbjct: 315 KGPVVETYIGFIESYRDP-FGVRAEYEGFVSIVNKSMSAKFADLVSSAETLLPQLPWPSS 373
Query: 511 YKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKN 570
Y+ KD P + G P + N+PN + I +D G V L NV A +
Sbjct: 374 YE-KDTFLRPDFTSLDVLGFGSSGIPAGI--NIPNYDEIRQDEGFKNVSLGNVLSAHSAD 430
Query: 571 ILRPIADVCIRKEQQEL---VDFDSFFTHNICHECC-HGIGPHSITLPDG-----RQSTV 621
+ I + +E EL + SF HE HG G I PDG +S V
Sbjct: 431 --QKI--TFLTEEDAELYSKLKAPSFEVQVGLHELLGHGSGKLFIKKPDGSYNFDHKSVV 486
Query: 622 RLE------------------LQELHSAMEEAKADIVGLWALKFLIGRDLL 654
E EL S+ EE +A+ VG++ + +D+L
Sbjct: 487 NTETGEKIQSWYTEGETWSTKFAELSSSYEECRAECVGIY---LCLNKDVL 534
>sp|Q7N0A6|IDI2_PHOLL Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi2 PE=3
SV=1
Length = 177
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 27 RSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISA 86
++++H+ G HR + ++F ++ LLLQ+RA K G+W S GH G++ +A
Sbjct: 20 KADIHQKGMLHRAFSIFVF-DNKGNLLLQKRAATKYHSAGLWTNSCCGHPRVGEALEAAA 78
Query: 87 QRELQEELGINLP-KDAFEFVF-TFLQQNVI 115
R L EE+G + P K F++ L N+I
Sbjct: 79 HRRLGEEMGFDCPLKKVSSFIYHAILPNNLI 109
>sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2
Length = 229
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 34 GDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGH------------ISAGDS 81
G HR + +IF E + LLLQ+RA+ K ++P +W + H A +
Sbjct: 51 GLLHRAFSMFIFDEQNR-LLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEG 109
Query: 82 SLISAQRELQEELGIN---LPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIP 138
+AQR+L ELGI +PKD F+F+ T + + G + +E Y++ +
Sbjct: 110 VKNAAQRKLFHELGIQAKYIPKDKFQFL-TRIHYLAPSTGAWGEHEID--YILFFKGKVE 166
Query: 139 LEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 174
L+ + EV A KY+ EE K + + F P+
Sbjct: 167 LD---INPNEVQAYKYVTMEELKEMFSDPQYGFTPW 199
>sp|B2U0Q6|IDI_SHIB3 Isopentenyl-diphosphate Delta-isomerase OS=Shigella boydii serotype
18 (strain CDC 3083-94 / BS512) GN=idi PE=3 SV=1
Length = 182
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+Q EH+ +L G TG + + H ++W+F Q LL+ RRA K +WP
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQ-LLVTRRALSKKAWP 59
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G+W S GH G+ + + R + ELG+ + E ++ + + + NE
Sbjct: 60 GVWTNSVCGHPQLGERNEDAVIRRCRYELGVEITPP--ESIYPDFRYRATDPNGIVENEV 117
Query: 126 ADVYLVTT 133
V+ T
Sbjct: 118 CPVFAART 125
>sp|A1R1M6|IDI_ARTAT Isopentenyl-diphosphate Delta-isomerase OS=Arthrobacter aurescens
(strain TC1) GN=idi PE=3 SV=1
Length = 184
Score = 52.4 bits (124), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 26 PRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLIS 85
P++ VH + + E+LL RR+ K +WPG+W S GH G+ +
Sbjct: 21 PKAGVHTLDTPLHLAFSCYLINDVGEVLLTRRSPEKKTWPGVWTNSFCGHPGPGEEFEDA 80
Query: 86 AQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVY---LVTTLNPIPLE 140
R Q ELG++ K E V + I+ + NE VY + LNP P E
Sbjct: 81 ILRRAQFELGVDANK--IELVLPHFRYRAIDPTGIVENEVCPVYVARITGVLNPNPAE 136
>sp|Q5NWG5|IDI2_AROAE Isopentenyl-diphosphate Delta-isomerase 2 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi2 PE=3 SV=1
Length = 189
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 30 VHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRE 89
H+ G HR ++ ++F +S L+LQRRA K G+W + H + S +A+R
Sbjct: 23 AHQRGALHRAISIFVF-DSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPNEESADAARRR 81
Query: 90 LQEELGINLP-KDAFEFVFTFLQQNVINDGKFINNEFADVYLVT-----TLNP 136
L+EE+G++ K AF FV+ + G I +EF V+ LNP
Sbjct: 82 LREEMGVDCELKKAFSFVY----RTKFGSG-LIEHEFDHVFFGNHDGRPVLNP 129
>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri
GN=IPI1 PE=2 SV=2
Length = 287
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 19/144 (13%)
Query: 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 87
HR + ++F S ELLLQ+R+ K ++P +W + H +S LI +AQ
Sbjct: 107 HRAFSVFLF-NSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQ 165
Query: 88 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 144
R+L +ELGI +LP D F + + +DGK+ +E YL+ + + L+
Sbjct: 166 RKLLDELGIPAEDLPVDQF-IPLSRILYKAPSDGKWGEHELD--YLLFIIRDVNLDP--- 219
Query: 145 QQTEVSAVKYIAYEEYKNLLAKDD 168
EV+ VKY+ ++ K LL K D
Sbjct: 220 NPDEVAEVKYMNRDDLKELLRKAD 243
>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana
GN=IPI2 PE=3 SV=1
Length = 290
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 87
HR ++F S ELLLQ+R+ K ++P +W + H +S LI +AQ
Sbjct: 110 HRAFTVFLF-NSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQ 168
Query: 88 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 144
R+L +ELGI ++P D F V L + +DGK+ +E YL+ + + +
Sbjct: 169 RKLLDELGIPAEDVPVDEFTPVSRMLYK-APSDGKWGEHELD--YLLFIVRDVGIHP--- 222
Query: 145 QQTEVSAVKYIAYEEYKNLLAKDD 168
EV+ +KY+ E+ K LL K D
Sbjct: 223 NPDEVADIKYVNREQLKELLRKAD 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,929,925
Number of Sequences: 539616
Number of extensions: 12032688
Number of successful extensions: 31106
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 30976
Number of HSP's gapped (non-prelim): 164
length of query: 779
length of database: 191,569,459
effective HSP length: 125
effective length of query: 654
effective length of database: 124,117,459
effective search space: 81172818186
effective search space used: 81172818186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)