Query 004012
Match_columns 779
No_of_seqs 326 out of 2026
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 15:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02791 Nudix hydrolase homol 100.0 4E-176 8E-181 1524.5 71.0 769 6-778 1-769 (770)
2 PF03571 Peptidase_M49: Peptid 100.0 4E-114 8E-119 970.9 31.0 455 311-779 2-524 (549)
3 KOG3675 Dipeptidyl peptidase I 100.0 1.9E-67 4.2E-72 545.8 8.0 332 392-778 4-373 (417)
4 cd03676 Nudix_hydrolase_3 Memb 99.9 2.8E-25 6E-30 223.0 18.0 173 6-189 2-178 (180)
5 cd02885 IPP_Isomerase Isopente 99.9 6.2E-25 1.3E-29 217.4 16.3 158 8-174 1-159 (165)
6 PLN02552 isopentenyl-diphospha 99.9 1.3E-24 2.8E-29 226.4 18.7 167 3-174 17-215 (247)
7 PRK03759 isopentenyl-diphospha 99.9 6E-24 1.3E-28 214.2 17.5 161 6-175 3-164 (184)
8 TIGR02150 IPP_isom_1 isopenten 99.9 7E-24 1.5E-28 208.5 16.6 153 11-175 1-154 (158)
9 COG1443 Idi Isopentenyldiphosp 99.9 1.7E-23 3.8E-28 200.6 10.9 161 6-174 1-164 (185)
10 PRK15393 NUDIX hydrolase YfcD; 99.9 5.9E-21 1.3E-25 191.7 18.3 149 2-165 3-151 (180)
11 cd04692 Nudix_Hydrolase_33 Mem 99.8 1.8E-20 4E-25 181.2 15.4 137 36-175 1-139 (144)
12 PLN02839 nudix hydrolase 99.8 4.6E-19 1E-23 190.9 17.5 191 6-208 172-368 (372)
13 KOG0142 Isopentenyl pyrophosph 99.8 8.1E-19 1.7E-23 171.4 8.3 159 8-174 19-194 (225)
14 cd04693 Nudix_Hydrolase_34 Mem 99.7 2.1E-17 4.6E-22 156.0 13.8 122 38-174 1-122 (127)
15 cd04697 Nudix_Hydrolase_38 Mem 99.7 6.4E-17 1.4E-21 152.9 14.4 121 38-174 1-121 (126)
16 cd04682 Nudix_Hydrolase_23 Mem 99.7 8.2E-16 1.8E-20 144.3 12.6 113 37-163 1-114 (122)
17 PRK15434 GDP-mannose mannosyl 99.6 3.1E-15 6.8E-20 147.1 15.1 119 37-163 17-137 (159)
18 PRK15472 nucleoside triphospha 99.6 1.5E-15 3.3E-20 146.1 12.6 117 37-163 3-125 (141)
19 cd03430 GDPMH GDP-mannose glyc 99.6 5.7E-15 1.2E-19 143.1 15.4 118 38-163 13-132 (144)
20 cd04679 Nudix_Hydrolase_20 Mem 99.6 7.2E-15 1.6E-19 138.3 14.2 115 37-164 2-116 (125)
21 cd04683 Nudix_Hydrolase_24 Mem 99.6 7.6E-15 1.7E-19 136.9 13.9 115 39-165 2-116 (120)
22 cd03426 CoAse Coenzyme A pyrop 99.6 7.1E-15 1.5E-19 144.5 13.2 115 37-163 2-118 (157)
23 PF00293 NUDIX: NUDIX domain; 99.6 9.3E-15 2E-19 137.7 12.6 122 36-166 1-122 (134)
24 cd04684 Nudix_Hydrolase_25 Con 99.6 1.8E-14 4E-19 135.2 14.3 116 39-163 2-117 (128)
25 cd04694 Nudix_Hydrolase_35 Mem 99.6 2.7E-14 5.8E-19 138.2 15.4 128 39-169 3-137 (143)
26 cd04673 Nudix_Hydrolase_15 Mem 99.6 2.5E-14 5.5E-19 133.3 14.3 113 39-163 2-114 (122)
27 cd04691 Nudix_Hydrolase_32 Mem 99.6 3E-14 6.5E-19 133.0 13.8 109 38-165 2-110 (117)
28 cd04700 DR1025_like DR1025 fro 99.6 5.1E-14 1.1E-18 136.1 15.8 124 30-167 6-129 (142)
29 cd03671 Ap4A_hydrolase_plant_l 99.6 6.2E-14 1.3E-18 136.1 16.5 122 36-165 2-133 (147)
30 cd04696 Nudix_Hydrolase_37 Mem 99.6 3.7E-14 8.1E-19 133.5 14.0 112 38-163 3-114 (125)
31 cd04678 Nudix_Hydrolase_19 Mem 99.6 3.6E-14 7.7E-19 134.2 13.9 122 37-173 2-123 (129)
32 cd04681 Nudix_Hydrolase_22 Mem 99.6 2.8E-14 6.1E-19 135.0 12.9 111 39-161 3-113 (130)
33 cd04664 Nudix_Hydrolase_7 Memb 99.6 2.7E-14 5.7E-19 135.2 12.7 115 38-165 2-120 (129)
34 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 4.6E-14 9.9E-19 134.9 14.4 118 37-167 2-119 (137)
35 PRK09438 nudB dihydroneopterin 99.6 4.8E-14 1E-18 136.9 14.6 116 37-165 7-131 (148)
36 cd04687 Nudix_Hydrolase_28 Mem 99.5 1.1E-13 2.3E-18 130.9 15.1 120 38-163 2-121 (128)
37 cd03674 Nudix_Hydrolase_1 Memb 99.5 9.6E-14 2.1E-18 133.4 14.2 115 37-163 2-123 (138)
38 cd03673 Ap6A_hydrolase Diadeno 99.5 1E-13 2.3E-18 130.6 13.9 114 38-165 2-118 (131)
39 cd04689 Nudix_Hydrolase_30 Mem 99.5 2E-13 4.3E-18 128.5 14.7 112 37-161 1-112 (125)
40 cd04699 Nudix_Hydrolase_39 Mem 99.5 1.7E-13 3.8E-18 128.8 13.8 114 39-165 3-116 (129)
41 KOG4313 Thiamine pyrophosphoki 99.5 4.3E-14 9.3E-19 142.1 9.7 198 5-215 101-305 (306)
42 cd03427 MTH1 MutT homolog-1 (M 99.5 1.5E-13 3.3E-18 131.1 12.6 110 38-163 2-111 (137)
43 cd04688 Nudix_Hydrolase_29 Mem 99.5 2.8E-13 6.1E-18 127.6 14.2 113 37-162 2-117 (126)
44 PLN02325 nudix hydrolase 99.5 3.3E-13 7.2E-18 130.8 14.7 117 37-163 9-125 (144)
45 cd04677 Nudix_Hydrolase_18 Mem 99.5 1.5E-13 3.3E-18 130.1 12.1 114 36-164 6-123 (132)
46 cd04680 Nudix_Hydrolase_21 Mem 99.5 1.5E-13 3.2E-18 127.8 11.7 107 39-163 2-108 (120)
47 PRK00714 RNA pyrophosphohydrol 99.5 7.6E-13 1.7E-17 130.0 15.6 118 36-164 7-136 (156)
48 cd03429 NADH_pyrophosphatase N 99.5 5.7E-13 1.2E-17 126.9 14.0 106 39-163 2-107 (131)
49 cd03675 Nudix_Hydrolase_2 Cont 99.5 8.4E-13 1.8E-17 125.6 15.0 112 39-165 2-113 (134)
50 cd04690 Nudix_Hydrolase_31 Mem 99.5 6E-13 1.3E-17 123.6 13.1 107 40-162 3-109 (118)
51 cd04670 Nudix_Hydrolase_12 Mem 99.5 5.1E-13 1.1E-17 126.0 12.8 110 38-162 3-112 (127)
52 cd04671 Nudix_Hydrolase_13 Mem 99.5 6.4E-13 1.4E-17 125.3 13.3 107 39-161 2-108 (123)
53 cd03428 Ap4A_hydrolase_human_l 99.5 6.7E-13 1.5E-17 125.4 13.2 113 38-165 3-117 (130)
54 cd04695 Nudix_Hydrolase_36 Mem 99.5 1.5E-12 3.3E-17 123.8 15.0 103 48-165 12-116 (131)
55 cd04685 Nudix_Hydrolase_26 Mem 99.4 1.2E-12 2.6E-17 125.2 13.6 120 38-163 1-123 (133)
56 cd04666 Nudix_Hydrolase_9 Memb 99.4 2.2E-12 4.8E-17 121.5 15.0 114 39-165 2-117 (122)
57 cd04676 Nudix_Hydrolase_17 Mem 99.4 1.1E-12 2.3E-17 122.9 12.3 111 39-163 4-117 (129)
58 cd04672 Nudix_Hydrolase_14 Mem 99.4 2E-12 4.3E-17 121.4 13.7 109 39-163 4-112 (123)
59 cd03672 Dcp2p mRNA decapping e 99.4 1.4E-12 3E-17 126.6 12.7 111 39-166 3-114 (145)
60 COG1051 ADP-ribose pyrophospha 99.4 1.3E-12 2.9E-17 126.7 12.5 114 36-163 9-122 (145)
61 PRK10546 pyrimidine (deoxy)nuc 99.4 2.9E-12 6.4E-17 122.0 14.2 106 40-163 7-112 (135)
62 PRK10776 nucleoside triphospha 99.4 9.3E-12 2E-16 116.8 15.9 106 40-162 7-112 (129)
63 cd04669 Nudix_Hydrolase_11 Mem 99.4 3.1E-12 6.8E-17 120.0 12.4 107 40-163 3-114 (121)
64 cd04667 Nudix_Hydrolase_10 Mem 99.4 4.9E-12 1.1E-16 116.8 13.1 93 49-164 10-102 (112)
65 cd03425 MutT_pyrophosphohydrol 99.4 4.6E-12 9.9E-17 117.6 12.9 106 40-162 4-109 (124)
66 cd04511 Nudix_Hydrolase_4 Memb 99.4 4.3E-12 9.3E-17 120.5 12.5 103 39-161 15-117 (130)
67 PRK05379 bifunctional nicotina 99.4 6.8E-12 1.5E-16 138.3 15.5 120 37-163 203-322 (340)
68 PRK00241 nudC NADH pyrophospha 99.4 3.6E-12 7.7E-17 134.9 12.7 116 27-162 117-237 (256)
69 cd04686 Nudix_Hydrolase_27 Mem 99.4 9.6E-12 2.1E-16 118.4 14.4 113 39-163 2-119 (131)
70 PRK10707 putative NUDIX hydrol 99.3 1.4E-11 3E-16 124.9 15.0 113 40-164 34-147 (190)
71 cd04661 MRP_L46 Mitochondrial 99.3 5.2E-12 1.1E-16 120.5 11.2 106 49-165 12-122 (132)
72 cd02883 Nudix_Hydrolase Nudix 99.3 1.2E-11 2.6E-16 113.7 13.3 111 39-163 2-112 (123)
73 TIGR00586 mutt mutator mutT pr 99.3 1.9E-11 4.1E-16 115.0 13.7 108 39-163 6-113 (128)
74 TIGR00052 nudix-type nucleosid 99.3 2.9E-11 6.3E-16 122.1 13.4 120 39-167 46-169 (185)
75 PRK11762 nudE adenosine nucleo 99.3 6E-11 1.3E-15 119.8 15.7 115 39-167 49-163 (185)
76 PLN02709 nudix hydrolase 99.3 3.4E-11 7.3E-16 123.7 13.8 119 34-162 30-154 (222)
77 cd04662 Nudix_Hydrolase_5 Memb 99.2 9.2E-11 2E-15 110.5 12.5 60 39-99 2-65 (126)
78 TIGR02705 nudix_YtkD nucleosid 99.2 2.6E-10 5.6E-15 111.6 15.8 125 39-188 26-151 (156)
79 PRK10729 nudF ADP-ribose pyrop 99.2 4.9E-10 1.1E-14 114.7 16.3 120 39-167 51-175 (202)
80 PRK15009 GDP-mannose pyrophosp 99.1 1.5E-09 3.1E-14 110.2 16.9 127 26-167 38-170 (191)
81 PRK08999 hypothetical protein; 99.1 3.9E-10 8.5E-15 123.0 13.5 107 39-162 7-113 (312)
82 cd04665 Nudix_Hydrolase_8 Memb 99.1 7.9E-10 1.7E-14 103.6 12.6 101 39-160 2-102 (118)
83 COG2816 NPY1 NTP pyrophosphohy 99.0 3E-10 6.6E-15 119.1 6.6 119 27-165 129-252 (279)
84 cd04674 Nudix_Hydrolase_16 Mem 99.0 6.7E-09 1.5E-13 97.3 13.1 53 51-106 16-68 (118)
85 cd03670 ADPRase_NUDT9 ADP-ribo 98.9 2.9E-08 6.4E-13 99.9 13.1 42 51-98 50-91 (186)
86 cd04663 Nudix_Hydrolase_6 Memb 98.8 8.2E-08 1.8E-12 90.8 12.2 52 40-98 3-55 (126)
87 COG0494 MutT NTP pyrophosphohy 98.8 5.5E-08 1.2E-12 91.6 11.2 118 39-163 13-134 (161)
88 KOG3084 NADH pyrophosphatase I 98.8 6.3E-09 1.4E-13 109.3 5.0 112 38-165 188-300 (345)
89 KOG3069 Peroxisomal NUDIX hydr 98.8 2.4E-08 5.3E-13 101.3 8.8 118 36-162 42-162 (246)
90 PLN03143 nudix hydrolase; Prov 98.7 1.2E-07 2.7E-12 101.5 13.7 150 12-165 93-267 (291)
91 KOG2839 Diadenosine and diphos 98.7 1.1E-07 2.3E-12 90.1 9.2 115 37-165 9-127 (145)
92 KOG0648 Predicted NUDIX hydrol 98.6 2E-08 4.2E-13 106.1 2.4 115 39-163 117-231 (295)
93 cd03431 DNA_Glycosylase_C DNA 98.4 3.9E-06 8.4E-11 77.3 13.0 102 39-163 4-105 (118)
94 KOG3041 Nucleoside diphosphate 98.2 4.5E-05 9.8E-10 75.7 14.8 110 48-165 84-196 (225)
95 COG4119 Predicted NTP pyrophos 97.7 0.00011 2.4E-09 67.9 8.0 93 65-167 35-139 (161)
96 PF14815 NUDIX_4: NUDIX domain 97.2 0.00058 1.3E-08 63.2 6.1 102 42-163 2-103 (114)
97 COG4112 Predicted phosphoester 96.5 0.025 5.4E-07 54.8 10.4 127 26-163 49-187 (203)
98 KOG4195 Transient receptor pot 95.0 0.046 1E-06 55.5 6.1 40 51-96 140-179 (275)
99 COG4227 Antirestriction protei 94.1 0.057 1.2E-06 56.4 4.3 66 592-665 201-266 (316)
100 PF13869 NUDIX_2: Nucleotide h 90.1 1.4 3.1E-05 44.5 8.5 118 32-162 39-169 (188)
101 KOG4432 Uncharacterized NUDIX 88.5 2.1 4.5E-05 45.7 8.6 126 36-168 228-381 (405)
102 PRK10880 adenine DNA glycosyla 86.2 3.5 7.6E-05 46.0 9.4 50 38-97 231-280 (350)
103 KOG4432 Uncharacterized NUDIX 85.7 2.1 4.4E-05 45.8 6.8 62 68-136 81-142 (405)
104 KOG2937 Decapping enzyme compl 82.7 0.26 5.7E-06 53.3 -1.3 105 40-163 85-192 (348)
105 cd04278 ZnMc_MMP Zinc-dependen 77.6 0.89 1.9E-05 44.5 0.6 18 593-610 106-123 (157)
106 cd04279 ZnMc_MMP_like_1 Zinc-d 76.7 0.91 2E-05 44.4 0.4 17 594-610 104-120 (156)
107 cd04268 ZnMc_MMP_like Zinc-dep 75.8 0.88 1.9E-05 44.6 0.0 19 592-610 92-110 (165)
108 PF14443 DBC1: DBC1 75.2 14 0.00031 35.0 7.8 67 65-131 23-92 (126)
109 PF00413 Peptidase_M10: Matrix 73.4 1.1 2.3E-05 43.4 -0.1 19 592-610 103-121 (154)
110 cd04277 ZnMc_serralysin_like Z 72.5 1.2 2.7E-05 44.8 0.1 19 592-610 111-129 (186)
111 KOG4548 Mitochondrial ribosoma 71.6 17 0.00037 38.4 8.1 43 52-98 141-184 (263)
112 KOG1689 mRNA cleavage factor I 70.4 8.2 0.00018 38.1 5.2 56 33-95 66-122 (221)
113 smart00235 ZnMc Zinc-dependent 66.4 1.8 3.9E-05 41.4 -0.2 15 596-610 88-102 (140)
114 cd00203 ZnMc Zinc-dependent me 64.8 2.2 4.8E-05 41.7 0.1 18 592-609 94-111 (167)
115 cd04327 ZnMc_MMP_like_3 Zinc-d 58.5 3.2 6.9E-05 42.4 -0.0 18 593-610 91-108 (198)
116 TIGR01084 mutY A/G-specific ad 58.2 20 0.00044 38.7 6.0 34 37-71 226-259 (275)
117 PF09471 Peptidase_M64: IgA Pe 56.7 3.6 7.9E-05 44.1 0.0 16 593-608 215-230 (264)
118 PF13688 Reprolysin_5: Metallo 55.3 3.9 8.4E-05 41.3 -0.0 17 592-608 140-156 (196)
119 PF13582 Reprolysin_3: Metallo 53.7 4.2 9E-05 37.8 -0.1 14 595-608 108-121 (124)
120 cd04271 ZnMc_ADAM_fungal Zinc- 47.7 6.3 0.00014 41.4 0.1 14 595-608 146-159 (228)
121 cd04270 ZnMc_TACE_like Zinc-de 47.3 6.8 0.00015 41.5 0.3 16 593-608 166-181 (244)
122 PRK13910 DNA glycosylase MutY; 47.1 23 0.0005 38.6 4.3 28 40-71 189-216 (289)
123 PF12388 Peptidase_M57: Dual-a 45.2 8 0.00017 40.0 0.4 14 595-608 134-147 (211)
124 PF13583 Reprolysin_4: Metallo 44.4 7.5 0.00016 40.1 0.1 16 595-610 138-153 (206)
125 cd04276 ZnMc_MMP_like_2 Zinc-d 43.5 8.1 0.00018 39.7 0.1 17 594-610 116-132 (197)
126 PF13574 Reprolysin_2: Metallo 42.6 7.4 0.00016 38.9 -0.3 19 592-610 109-127 (173)
127 cd04280 ZnMc_astacin_like Zinc 39.3 9.3 0.0002 38.5 -0.2 18 593-610 73-90 (180)
128 cd04267 ZnMc_ADAM_like Zinc-de 39.0 11 0.00024 38.0 0.3 16 594-609 133-148 (192)
129 KOG3675 Dipeptidyl peptidase I 38.1 17 0.00037 40.1 1.5 38 217-254 22-62 (417)
130 cd04283 ZnMc_hatching_enzyme Z 37.5 10 0.00023 38.4 -0.2 17 594-610 77-93 (182)
131 PF05572 Peptidase_M43: Pregna 37.3 11 0.00023 37.2 -0.1 18 594-611 69-86 (154)
132 PF02031 Peptidase_M7: Strepto 36.7 9.8 0.00021 36.2 -0.5 14 595-608 78-91 (132)
133 PF01400 Astacin: Astacin (Pep 34.7 12 0.00026 38.1 -0.3 18 594-611 79-96 (191)
134 COG3824 Predicted Zn-dependent 33.0 17 0.00036 34.2 0.4 14 595-608 110-123 (136)
135 cd04281 ZnMc_BMP1_TLD Zinc-dep 32.5 15 0.00032 37.8 0.0 16 595-610 88-103 (200)
136 PF11350 DUF3152: Protein of u 32.2 21 0.00046 36.6 1.0 18 595-612 140-157 (203)
137 cd04269 ZnMc_adamalysin_II_lik 31.8 18 0.00038 36.6 0.4 15 594-608 131-145 (194)
138 PF06114 DUF955: Domain of unk 31.4 15 0.00032 33.1 -0.2 44 595-645 43-86 (122)
139 PF03487 IL13: Interleukin-13; 31.1 42 0.00091 25.3 2.1 22 73-94 15-36 (43)
140 cd04273 ZnMc_ADAMTS_like Zinc- 30.1 15 0.00033 37.7 -0.4 15 594-608 140-154 (207)
141 COG5549 Predicted Zn-dependent 29.9 20 0.00044 36.8 0.5 15 594-608 187-201 (236)
142 cd06461 M2_ACE Peptidase famil 29.3 3.3E+02 0.0072 31.9 10.3 56 595-657 248-306 (477)
143 cd04282 ZnMc_meprin Zinc-depen 28.2 18 0.0004 38.0 -0.2 17 594-610 120-136 (230)
144 PF06262 DUF1025: Possibl zinc 26.6 21 0.00045 32.5 -0.1 31 573-608 57-87 (97)
145 PF02128 Peptidase_M36: Fungal 26.6 29 0.00064 39.0 1.0 49 592-645 183-232 (378)
146 PF04298 Zn_peptidase_2: Putat 26.3 22 0.00048 37.1 0.0 15 594-608 89-103 (222)
147 cd04272 ZnMc_salivary_gland_MP 25.7 23 0.0005 36.6 0.0 18 452-469 43-60 (220)
148 cd04275 ZnMc_pappalysin_like Z 23.7 22 0.00047 37.3 -0.6 19 594-612 137-155 (225)
149 smart00685 DM14 Repeats in fly 23.6 4E+02 0.0088 22.0 6.8 45 719-768 9-53 (59)
150 PF01421 Reprolysin: Reprolysi 23.6 27 0.00058 35.5 -0.0 15 594-608 131-145 (199)
151 KOG1565 Gelatinase A and relat 22.6 34 0.00073 39.9 0.6 19 593-611 210-228 (469)
152 PF05548 Peptidase_M11: Gameto 21.2 36 0.00077 37.6 0.4 16 595-610 151-166 (314)
No 1
>PLN02791 Nudix hydrolase homolog
Probab=100.00 E-value=3.8e-176 Score=1524.47 Aligned_cols=769 Identities=78% Similarity=1.229 Sum_probs=722.7
Q ss_pred cccccEEEECCCCccccccccccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHH
Q 004012 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLIS 85 (779)
Q Consensus 6 ~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eA 85 (779)
|++|+|+|||++++++|.+++|..+|..|.+|++|+|+|++..+++||||||+..|..|||+|+++||||++.|||+.+|
T Consensus 1 ~~eE~~DI~De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eA 80 (770)
T PLN02791 1 MMEEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLS 80 (770)
T ss_pred CCceEEEEECCCCCCCCccccHHhhccCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHH
Confidence 67899999999999999878999999999999999999999546899999999999999999999889999999999999
Q ss_pred HHHHHHHHhCCccCCCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 86 AQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 86 AlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
|+||++||+||.++...+..++.+.+......|.+.+++++++|.+....+.+..++.++++||++++|++++|+.+++.
T Consensus 81 A~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 81 AQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred HHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHh
Confidence 99999999999976666777777655443345566788999999987655555556788999999999999999999998
Q ss_pred cCCCCcccCCCCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcccccchhccCCCHHHHHHHHHHHHHHHhhchhhee
Q 004012 166 KDDPSFVPYDVNGGYGQLFNIISQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYL 245 (779)
Q Consensus 166 ~~~~~f~p~~~~~~~~~~f~~l~~~~~~~~~~r~~~L~~~l~rf~pv~l~~df~~Ls~~Ek~y~~~l~~Aa~~g~~i~~~ 245 (779)
..+..|+||...+.+..+|+.+.+++.....+|..+|+++++||.||.++.|+++||+.||+++.+|++||.++++|||+
T Consensus 161 ~~~~~fvP~~~~~~~~~~f~~i~~~~~~~~~~r~~~l~~~l~~~~~~~l~~d~~~l~~~~~~~l~~l~~aa~~~d~~f~~ 240 (770)
T PLN02791 161 KEDPAYVPYDVNGEYGQLFSIIEKRYKVNTEARSLTLQKQLNRYAPVNLEAELTGLSEGDRKALSYIIKAAKILDDIFYE 240 (770)
T ss_pred cCCCceeeccccchHHHHHHHHHHHHhcccHHHHHHHHHHhhCcceeEeeeccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999987788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHhccccchhhHHHHHHhhhcCCCCCCCCCCCcCccCchhHhhhcCCCCCCcCcccccccccCCCCCC
Q 004012 246 QVWYSNPVLRDWLKEHADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASFPLPK 325 (779)
Q Consensus 246 Q~~~e~~~i~~~i~~~~~~~~~~~~~l~y~~~N~gn~~~~~~d~kFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (779)
|+++.++.+++.|...++.+++++.++.||++|+|||+++++|++|+++.+++|+.|++.++....|++++|++.+|..+
T Consensus 241 q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~in~gpW~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (770)
T PLN02791 241 QVWNSNPALRDWLKAHAEASELDKLKWAYYSINKSPWSCLDENEAFLTTADSAVKLLPGATKSVSGWKGLEYRAAFPVEK 320 (770)
T ss_pred HhccCCHHHHHhhhcccccCccchHHHHHHHHhcCcccccCCCCCCcCCcchhhhcccccccccccccccchhccccCCC
Confidence 99999999999999888777888888999999999999999999999999999999999999999999999999999778
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhccHhhhhhcCCCceEEEecCcccccccccccccccCCccccCCCceEEeecccccHHH
Q 004012 326 PPGANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSY 405 (779)
Q Consensus 326 ~~gs~yYp~~it~~e~~~~~~~~~~~~~~~~~~~~t~~~r~~~~~~~as~~~~~~~~~~~~~~~~g~~~~v~y~g~y~~~ 405 (779)
|+|+||||+|||++||++|.+.||+.+++.++++||+|+|+++..|.+|...+. +.+. ++.|+|++||||++|+++
T Consensus 321 p~ga~~YP~d~~~~ef~~~~~~~~~~~~~~~~~~~t~i~r~~~~~~~~~~~~~~---~~~~-~~~~~L~~vpys~~Y~~~ 396 (770)
T PLN02791 321 PPGANFYPPDMDKMEFELWKSGLTEKEQEDATGFFTVIKRHSELSLDASDQLDG---STQT-DTSHDLFSVPYSEEYKPF 396 (770)
T ss_pred CCCCCcCCCCCCHHHHHHHHhhCChhhHHhhcCCeEEEEecccccccccccccc---cccc-CCCCCEEEecccHHHHHH
Confidence 999999999999999999999999989999999999999998666655533221 1122 236889999999999999
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHhccCcchhhhHhhhccCCeeeeeeccccccccCcCCccccceeeeeecCh
Q 004012 406 LTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNYYDSDIAWIELDSELDVTIGPYETYEDAIFGYKATFEAFIGIRDD 485 (779)
Q Consensus 406 l~~i~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg~~~~s~~~Wv~~~~~ve~~iGfiEtY~Dp~~g~ka~~E~~V~i~d~ 485 (779)
|++|+.+|++|++||+|++|++||.+||++|+|++|++||++||+++|+||++|||||||+||+||+||+|||||+|+|+
T Consensus 397 l~~i~~~L~~A~~~a~n~~q~~~L~~~a~~F~t~~~~~s~~~Wvk~~~~ve~~iGfiEtY~Dpl~G~ka~fE~fV~i~d~ 476 (770)
T PLN02791 397 LKKAAELLHKAGDCADSPSLKRLLKSKAEAFLSNDYYESDIAWMELDSKLDVTIGPYETYEDGLFGYKATFEAFIGIRDD 476 (770)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccchHHHHHHHHhcCCceeEeeCCceeccCcccCcceeeEEEEEEeCH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHhCCCCcccccCCcCCCCceEEeeeeccCCCCCCccceecCCCchhHHhhccceeEEecchhh
Q 004012 486 KATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSE 565 (779)
Q Consensus 486 ~~s~k~~~l~~~a~~~~~~LPw~~~~~k~~~~~~~~~~~~vl~~~g~~~~~~~~giNlPN~~~ir~~~G~K~v~l~Nv~~ 565 (779)
++|+|+++|+++||+||++|||+++|||++|..|||+||+|+++|||+.|++||||||||||+||+++|||||||+|||+
T Consensus 477 e~t~k~~~~~~~a~~~e~~LP~~~~~~k~~~~~~~~~~i~v~~~aGd~~~~~pigiNLPN~d~Ir~~~G~K~V~L~Nv~~ 556 (770)
T PLN02791 477 KATAQLKLFGDNLQTLEDNLPLDDVYKSTNVSAAPIRVIQLLYNSGDVKGPQTVAFNLPNDERIVKERGTSMVMLKNVSE 556 (770)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhcccccCCCCCceeehhhhccccCCCCCceeECCCcHHHHhhcCceEeeecchhh
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhhHhhhccccchhhhhhhhcccccCCCCcccCCCcccccchhhhhccchHHhHHHHHHHHHHH
Q 004012 566 AKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWAL 645 (779)
Q Consensus 566 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lHElgHg~G~~~~~~~~~~~~t~~~~~~~~~s~~EE~rAd~~glyl~ 645 (779)
|++++...|++++|++++|++++.+++||+||++|||||||||+++++++|++.||+.+||+++|+|||||||+||||++
T Consensus 557 A~~~~~~~~i~e~~i~~~~~~~~~~~af~~~v~lHElgHGsG~~~~~~~~g~~~t~~~~l~~~~s~lEE~RAD~vgLy~l 636 (770)
T PLN02791 557 AKFKHILKPIAEVCISEEQKGYVDFESFFTHTICHECCHGIGPHTITLPDGQKSTVRLELQEVHSALEEAKADIVGLWAL 636 (770)
T ss_pred hhccccccchhhhcCCHHHHHhhccccHHHHHHHHHhhccccccceecCCCCcCcHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99988888999999999999999999999999999999999999888878777899999999999999999999999999
Q ss_pred HHHHhCCCCChhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHhcCCEEEecCCcEEEehhhHHHHHHHHHHHH
Q 004012 646 KFLIGRDLLPKSLVKSMYVSFLAGCFRSVRFGLEESHGKGQALQFNWLFEKEAFILHSDDTFSVDFDKVEGAVESLSTEI 725 (779)
Q Consensus 646 ~~l~~~g~~~~~~~~~~y~~~l~~~~~~l~f~~~qaH~~a~~~i~~~l~e~g~~~~~~~g~~~vD~~k~~~av~~ll~~l 725 (779)
.+|+++|++++...+.+|++||+|++|+||||.+|||||||++|+|||+|+|+|+.++||+|+||++||+.||++||++|
T Consensus 637 ~~l~~~g~l~~~~~~~~Y~~~l~~~~~~vR~GleqAH~~ar~~i~~~~le~G~~~~~~dg~~~vD~~Ki~~av~~ll~~l 716 (770)
T PLN02791 637 HFLIDKGLLSKSLEKSMYVSFLAGCFRSIRFGLEEAHGKGQALQFNWLYEKGAFVLHSDGTFSVDFAKVEDAVESLSREI 716 (770)
T ss_pred HHhhhcCCCCcHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHcCCEEEcCCceEEEcHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999887778999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCHhHHHHHHhhhccCCCcccccchhhhhhhc
Q 004012 726 LTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIAPTFTAVNKLL 778 (779)
Q Consensus 726 ~~~k~~gD~~~~~~l~~~~~~v~~~~~~~l~~~~~~~~p~di~~~~~~~~~~~ 778 (779)
|+|||+||+++|++||++|++|+++++.+|++++.++|||||+|+|++++++|
T Consensus 717 ~~iks~GD~~aa~~l~e~y~~v~~~~~~~l~~~~~~~~pvdi~~~~~~~~~~~ 769 (770)
T PLN02791 717 LTIQAKGDKAAAISLLQKYATLTPPLRVALEKLEDVQVPVDIVPTFPTAEKLL 769 (770)
T ss_pred HeeecccCHHHHHHHHHHhccCCHHHHHHHHHhhhCCCCCCccccccchhhhc
Confidence 99999999999999999999999999999999999999999999999999886
No 2
>PF03571 Peptidase_M49: Peptidase family M49; InterPro: IPR005317 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M49 (dipeptidyl-peptidase III family, clan M-). The predicted active site residues occur in the motif HEXXXH which is unlike that in any other family. The dipeptidyl peptidase III aminopeptidases cleave dipeptides from the N-terminal of peptides consisting of four or more amino acids and have a broad specificity.; GO: 0008239 dipeptidyl-peptidase activity, 0006508 proteolysis, 0005737 cytoplasm; PDB: 3T6B_A 3FVY_A 3T6J_A 3CSK_A.
Probab=100.00 E-value=3.5e-114 Score=970.94 Aligned_cols=455 Identities=24% Similarity=0.335 Sum_probs=351.3
Q ss_pred cccccc---cccCC----CCCCCCC--CCCCCCCCCHHHHHHHHhhccHhhhhhcCCCceEEEecCc---cccccccccc
Q 004012 311 GWKGLE---YKASF----PLPKPPG--ANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRSE---FNLDSSLSGH 378 (779)
Q Consensus 311 ~~~~~~---~~~~~----~~~~~~g--s~yYp~~it~~e~~~~~~~~~~~~~~~~~~~~t~~~r~~~---~~~~as~~~~ 378 (779)
+|+.|+ |+..+ +|+|++| |+|||++||++||+.|++.| +.+.+.++||||+|.++ ..++||++++
T Consensus 2 Lw~~~~~~iy~~~~~~~~LG~p~~~~~s~YY~~~itk~ei~~v~~~l---~~~~i~~eNTRl~K~~~~~yei~~AS~~~~ 78 (549)
T PF03571_consen 2 LWEKIKDAIYSLEPRSLLLGFPSDGGQSTYYSSNITKEEIEAVQKFL---EKKGISPENTRLFKDGDGTYEILVASVETS 78 (549)
T ss_dssp HHCCHHHHCC---CCCTBBSSGCCTSB-TTEETT--HHHHHHHHHCH---HHCT--STTEEEEECCTCEEEEEEE-SSSS
T ss_pred hhHhhhhhhccCCCccccccccCCCCeeeecCCCCCHHHHHHHHHHH---HhcCCchhhceEEecCCCcEEEEecccccC
Confidence 355444 55554 3777766 99999999999999999999 56889999999999876 3499998877
Q ss_pred ccccCCccccCCCceEEeecccccHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhccC---cchhhhHhhhcc-CCe
Q 004012 379 IVDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSN---NYYDSDIAWIEL-DSE 454 (779)
Q Consensus 379 ~~~~~~~~~~~~g~~~~v~y~g~y~~~l~~i~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg---~~~~s~~~Wv~~-~~~ 454 (779)
..+........+|..+.++| |||+++|++||.+|++|++||+|++|++||++||++|+|| +|++||++||+| +|+
T Consensus 79 ~~~~~~~~~~~~g~~v~~~~-Gdy~~~l~~i~~~L~~A~~~a~N~~q~~~L~~yi~~F~tGs~~~~~~s~~~Wv~D~~p~ 157 (549)
T PF03571_consen 79 EPPEYTPKGEFEGKKVKLTY-GDYSPELKKIVEHLEKAAKYAANETQKKMLEKYIESFQTGSLDAHKESQRAWVKDKGPR 157 (549)
T ss_dssp SS-TTTTCECCTTEEEEEEE-EETHHHHHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHCS-S-S
T ss_pred CCCccccccccCCcEEEeCC-CchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCc
Confidence 54333211222566777774 9999999999999999999999999999999999999999 889999999999 999
Q ss_pred eeeeeccccccccCcCCccccceeeeeecChHHHHHHHHHhhhHHHHHHhCCCCcccccCCcCCCCceEEeeeeccCCCC
Q 004012 455 LDVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVK 534 (779)
Q Consensus 455 ve~~iGfiEtY~Dp~~g~ka~~E~~V~i~d~~~s~k~~~l~~~a~~~~~~LPw~~~~~k~~~~~~~~~~~~vl~~~g~~~ 534 (779)
||++||||||||||+ |+||||||||+|+|+++|+||++|+++|++|+++|||+++|||++|.+|||||++||+||||
T Consensus 158 VE~~iGFiEtYrDp~-G~rae~EgfVai~d~e~s~k~~~lv~~a~~f~~~LPw~~~fekd~f~~pdftsl~vl~fags-- 234 (549)
T PF03571_consen 158 VETNIGFIETYRDPF-GVRAEFEGFVAIVDKEESKKLSKLVDNAQEFIDHLPWPKEFEKDKFLAPDFTSLDVLTFAGS-- 234 (549)
T ss_dssp EEEEEEEEE-TTSTT-S-S-EEEEEEEEEEHCCHHHHHHHHHTHHHHHHHSSS-GGGS-SS-----EEEEEEEEEESS--
T ss_pred eeeeecCceeccCCC-CCccccceeeeccCHHHHHHHHHHHHHHHHHHhcCCCChhhccccCCCCCceEEEEEEecCC--
Confidence 999999999999996 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccceecCCCchhHHhhccceeEEecchhhhhhhcccccccccccChhhHhhhccc---cchhhhhhhhc-ccccCCCC
Q 004012 535 GPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKNILRPIADVCIRKEQQELVDFD---SFFTHNICHEC-CHGIGPHS 610 (779)
Q Consensus 535 ~~~~~giNlPN~~~ir~~~G~K~v~l~Nv~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~lHEl-gHg~G~~~ 610 (779)
++|+|||||||||||+++|||||+|+|||+|+++... |+ .|+++++++++.++ +|++||++||| ||||||++
T Consensus 235 -~ip~GINlPNyd~IR~~~GfKnV~L~Nv~~A~~~~~~-~~--~fi~~~d~~~~~~~~~~af~~~v~lHEllGHGsGkll 310 (549)
T PF03571_consen 235 -GIPAGINLPNYDDIRQEEGFKNVSLGNVLSAKFKAIR-PI--TFIDEEDQELFKKYRFDAFFVQVGLHELLGHGSGKLL 310 (549)
T ss_dssp ----SEEEE-S-HHHHHHT--EEEEEHHHHCCCCHTSG-G---TTC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCS----
T ss_pred -CCccceeCCChHHHHhhhcceeEEEechhhhhhccCC-CC--cccchhHHHHHHHhcCchHhhhhhHHhhccCcCccee
Confidence 4899999999999999999999999999999998775 11 58999999887665 99999999999 99999954
Q ss_pred cccCCC-----------------------cccccchhhhhccchHHhHHHHHHHHHHH--HHHHhC-CCCCh-hhHHHHH
Q 004012 611 ITLPDG-----------------------RQSTVRLELQELHSAMEEAKADIVGLWAL--KFLIGR-DLLPK-SLVKSMY 663 (779)
Q Consensus 611 ~~~~~~-----------------------~~~t~~~~~~~~~s~~EE~rAd~~glyl~--~~l~~~-g~~~~-~~~~~~y 663 (779)
.-..+| +|+||+++||.++||+||||||||||||| ++|+++ |+.+. ++.++.|
T Consensus 311 ~~~~~g~~Nfd~~~~~~pltg~~i~s~Y~~geTw~s~Fg~~ast~EECRAe~vglYL~~~~~vLeifg~~~~~~~~dv~y 390 (549)
T PF03571_consen 311 QETADGTFNFDKENPINPLTGKPITSWYKPGETWDSVFGSLASTYEECRAELVGLYLIADPEVLEIFGYTDKEEADDVIY 390 (549)
T ss_dssp BEETTC-ESS-TTT-BBTTTSSB----B-TT--HHHHHCCCHHHHHHHHHHHHHHHHTTSHHHHHHTT--TCHCHHHHHH
T ss_pred ecCCCCcccCCcCCCCCCCCCCCcceeCCCCCcccchhhcccchHHHHHHHHHHhHHhCCHhHHHHcCCCCcccHHHHHH
Confidence 322111 79999999999999999999999999999 899998 77666 4889999
Q ss_pred HHHHHH---HHhhhcc------CccchhhhHHHHHHHHHHhcCC--EE--EecC-C---cEEEehhhH----HHHHHHHH
Q 004012 664 VSFLAG---CFRSVRF------GLEESHGKGQALQFNWLFEKEA--FI--LHSD-D---TFSVDFDKV----EGAVESLS 722 (779)
Q Consensus 664 ~~~l~~---~~~~l~f------~~~qaH~~a~~~i~~~l~e~g~--~~--~~~~-g---~~~vD~~k~----~~av~~ll 722 (779)
++||.| ||++|+| .|+||||||||+|+++|+++|. ++ ...+ + .+++|++|| ++||++||
T Consensus 391 ~~~l~~~~~GL~~Le~y~p~~kkW~QAHmqaRf~Il~~lle~g~~~v~i~~~~~~~~~l~V~~Drski~t~Gr~aig~~L 470 (549)
T PF03571_consen 391 ANWLSMLRAGLRALEFYNPETKKWGQAHMQARFAILRVLLEAGKGFVTIEETKDDKPDLTVKLDRSKIETVGRPAIGEFL 470 (549)
T ss_dssp HHHHHHHHHHHHGGGGEETTTTEES-HHHHHHHHHHHHHHHCSTTSEEEEEECTTSCEEEEEE-GCGTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhheeeCCCCCchhHHhhHHHHHHHHHHHHcCCCeEEEEEecCCCCeEEEEEeHHHHHHHHHHHHHHHH
Confidence 999997 6788887 2999999999999999999655 33 3322 2 358899999 99999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCHhHHHHHHhhhccCCCcccccchhhhhhhcC
Q 004012 723 TEILTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIAPTFTAVNKLLQ 779 (779)
Q Consensus 723 ~~l~~~k~~gD~~~~~~l~~~~~~v~~~~~~~l~~~~~~~~p~di~~~~~~~~~~~~ 779 (779)
++||+||||||+++|++||++|+.|++++.+..+.+.....|+. .|+|.||++.
T Consensus 471 ~~LqvyKstaD~~~g~~lye~ys~Vd~~~~~~R~iV~~~k~Prk---~FvQ~nt~l~ 524 (549)
T PF03571_consen 471 LKLQVYKSTADVEAGRELYEKYSAVDPEFLKWRDIVLAKKKPRK---LFVQPNTFLE 524 (549)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHT---HHHHCCHHHHHHT--------EEE--EEEEC
T ss_pred HHHHHHhhcccHHHHHHHHhhccCCCHHHHHHHHHHHccCCccc---eEEcceEEEe
Confidence 99999999999999999999999999999665555544445877 8999998763
No 3
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=100.00 E-value=1.9e-67 Score=545.84 Aligned_cols=332 Identities=20% Similarity=0.247 Sum_probs=284.3
Q ss_pred ceEEeecccccHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhccCcchhhhHhhhccCCeeeeeeccccccccCcCC
Q 004012 392 DLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNYYDSDIAWIELDSELDVTIGPYETYEDAIFG 471 (779)
Q Consensus 392 ~~~~v~y~g~y~~~l~~i~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg~~~~s~~~Wv~~~~~ve~~iGfiEtY~Dp~~g 471 (779)
+...+| |||.-.|..++++|..|.++|+|+ .+|+.||.+| |.||++||||||||||. |
T Consensus 4 ~~~~vp--~D~~~~~~d~~e~l~~~~p~aan~------~~Y~~hf~kg-------------P~~e~~igFIqtyrdp~-G 61 (417)
T KOG3675|consen 4 TQYILP--NDIGVSSLDCAEALKLLSPTAANK------MKYVHHFSKG-------------PWYEGLIGFIQTYRDPA-G 61 (417)
T ss_pred ceeecC--cchhHHHHHHHHHHHHhChhhhhh------hhhhhhhhcC-------------chhhhhhhhhhhccccc-c
Confidence 456677 999999999999999999999999 7899999888 99999999999999997 9
Q ss_pred ccccceeeeeecChHHHHHHHHHhhhHHHHHHhCCCCcccccCCcCCCCceEEeeeeccCCCCCCccceecCCCchhHHh
Q 004012 472 YKATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVK 551 (779)
Q Consensus 472 ~ka~~E~~V~i~d~~~s~k~~~l~~~a~~~~~~LPw~~~~~k~~~~~~~~~~~~vl~~~g~~~~~~~~giNlPN~~~ir~ 551 (779)
.||+|||||++|||++|+||+.||.+|++|++.|||..+|+|+.|.+||||++||++|+|+ |+|+|||||||+|||+
T Consensus 62 ~r~efEgfVA~vNKe~saKF~~LV~~AE~~l~~lPw~~~~ekd~Fl~pDftsLdvlafags---GipAGINIpNy~dirq 138 (417)
T KOG3675|consen 62 SRGEFEGFVAVVNKEMSAKFSWLVNNAEQLLPELPWIYALEKDLFLAPDFTQLDVLAFAGS---GIPAGINIPNYTDIRQ 138 (417)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHhhhHhhhhhcCCcchhhhhhhccCCChhHHHHHHhhcC---CcccccCCCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 4899999999999999
Q ss_pred hccceeEEecchhhhhhhcccccccccccChhhHhhhccccchhhhhhhhc-ccccCCCCccc--CC---------Cccc
Q 004012 552 DRGTSMVMLKNVSEAKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHEC-CHGIGPHSITL--PD---------GRQS 619 (779)
Q Consensus 552 ~~G~K~v~l~Nv~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lHEl-gHg~G~~~~~~--~~---------~~~~ 619 (779)
+.||||| .+.+...+|..+++.|++ |||+=- .+.. |. ..++
T Consensus 139 ~egfKnv--------------------------~~~y~~~~f~~~~g~~kl~~~~s~t-~~~~~epe~~~~i~s~yk~~e 191 (417)
T KOG3675|consen 139 QEGFKNV--------------------------AAVYSNMGFYKQFGDTKLLGEGSTT-TVPNFEPEIPKEITSRYKSGE 191 (417)
T ss_pred HHHHHHH--------------------------HHHHhhhhhHhhcCcceeccccccc-ccCCcCccchHhhhhhhccce
Confidence 9999998 244566789999999999 999832 1111 11 1589
Q ss_pred ccchhhhhccchHHhHHHHHHHHHHH--HHHHhCCCCCh-hhHHHHHHHHHHHH--Hhhhcc------CccchhhhHHHH
Q 004012 620 TVRLELQELHSAMEEAKADIVGLWAL--KFLIGRDLLPK-SLVKSMYVSFLAGC--FRSVRF------GLEESHGKGQAL 688 (779)
Q Consensus 620 t~~~~~~~~~s~~EE~rAd~~glyl~--~~l~~~g~~~~-~~~~~~y~~~l~~~--~~~l~f------~~~qaH~~a~~~ 688 (779)
||++.|+.+.|++||||||.+||||+ +.++.+|..+. ++++..|++||.+. -.+|+| .|+||||+||++
T Consensus 192 t~~skf~~~~s~~eec~ae~~~l~l~l~~~vL~~~~~~~~~~~~vi~vnwl~~~~aglALE~~npe~~~W~QaH~~ARfv 271 (417)
T KOG3675|consen 192 TLGSKFGQIHSSEEECLAESVGLLLLLLRPVLIFFGLGKEEADEVISVNWLSEDRAGLALEFYNPEQKKWGQAHMRARFV 271 (417)
T ss_pred eccchhhhccChHHHHHHHHhhHHHhhcccceeeeccchhhcceeEeeehhhhhhhhhhhhhcCcccccccchhhhhhhh
Confidence 99999999999999999999999999 45665544444 48889999999962 235776 399999999999
Q ss_pred HHHHHHhcCC-EEE-ec-----CCcEEEehhhH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHh----HHH
Q 004012 689 QFNWLFEKEA-FIL-HS-----DDTFSVDFDKV----EGAVESLSTEILTIQARGDKEAASLLLQKYCTMTQP----LKV 753 (779)
Q Consensus 689 i~~~l~e~g~-~~~-~~-----~g~~~vD~~k~----~~av~~ll~~l~~~k~~gD~~~~~~l~~~~~~v~~~----~~~ 753 (779)
|+++++|+|. ++. .+ |-.+++|+||| ++||++||++||+||||||+++|.++|+.|++|++. +..
T Consensus 272 i~kv~lEageglvkie~T~g~Dd~~vrLDrSkI~svG~pal~~FL~rLqvykstgDve~G~~lye~y~tV~d~p~e~~lt 351 (417)
T KOG3675|consen 272 IMKVLLEAGEGLVKIEPTTGSDDARVRLDRSKIDSVGRPALEDFLRRLQVYKSTGDVEGGSKLYEGYATVTDAPPECFLT 351 (417)
T ss_pred hhhhHHHhcCCeeEeeccCCCcceeeeecHhhhhhcccHhHHHHHHHHHhhcccccccccceeeeccccccCCCccchhh
Confidence 9999999876 442 22 23679999999 799999999999999999999999999999999873 433
Q ss_pred HHHhhhccCCCcccccchhhhhhhc
Q 004012 754 ALQKLENVQVPVDIAPTFTAVNKLL 778 (779)
Q Consensus 754 ~l~~~~~~~~p~di~~~~~~~~~~~ 778 (779)
..|+.....-|+. .|+|.|+.+
T Consensus 352 lRDivl~rk~~rk---liVQpNt~l 373 (417)
T KOG3675|consen 352 LRDIVLLRKESRK---LIVQPNTRL 373 (417)
T ss_pred HHHHHHhhccchh---eEeccceee
Confidence 3333322234777 678887654
No 4
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.93 E-value=2.8e-25 Score=223.00 Aligned_cols=173 Identities=20% Similarity=0.173 Sum_probs=136.3
Q ss_pred cccccEEEECCCCccccccccccccccCCceeEEEEEEEE--ecC-CCEEEEEEeCCCCCCCCCCeeccccccCCCCCCH
Q 004012 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIF--AES-TQELLLQRRADFKDSWPGMWDISSAGHISAGDSS 82 (779)
Q Consensus 6 ~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hr~v~v~V~--~~~-~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~ 82 (779)
|++|+++|||++++++|. ++|..+|.+|.+|++|+++++ |.. +++||++||+..|..+||+|+..+|||+++|||+
T Consensus 2 ~~~E~~~v~d~~~~~~~~-~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~ 80 (180)
T cd03676 2 WRNELYAVYGPFGEPLFE-IERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGP 80 (180)
T ss_pred CcCcceeeECCCCCEeEE-EEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCH
Confidence 789999999999999996 799999999999999997644 521 2799999999999999999986679999999999
Q ss_pred HHHHHHHHHHHhCCccCCCC-eEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHH
Q 004012 83 LISAQRELQEELGINLPKDA-FEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (779)
Q Consensus 83 ~eAAlREl~EEtGl~v~~~~-l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~ 161 (779)
.+||+||++||||+++.... +..++.+.+.....++ ...+++.++|.+.+..+. .+.++++|+.++.|++++|+.
T Consensus 81 ~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~-~~~~e~~~~f~~~~~~~~---~~~~~~~Ev~~~~~~~~~el~ 156 (180)
T cd03676 81 EETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAG-GLQPEVEYVYDLELPPDF---IPAPQDGEVESFRLLTIDEVL 156 (180)
T ss_pred HHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCC-cEeeeEEEEEEEEcCCCC---eeCCCCCcEeEEEEECHHHHH
Confidence 99999999999999865322 5555544443321121 245678888877753322 236678999999999999999
Q ss_pred hHHhcCCCCcccCCCCcchHHHHHHHHH
Q 004012 162 NLLAKDDPSFVPYDVNGGYGQLFNIISQ 189 (779)
Q Consensus 162 ~~l~~~~~~f~p~~~~~~~~~~f~~l~~ 189 (779)
+++.+ +.|+|++ .-.+++++.+
T Consensus 157 ~~l~~--g~~~~~~----~lv~~~~~~~ 178 (180)
T cd03676 157 RALKE--GEFKPNC----ALVTLDFLIR 178 (180)
T ss_pred HHHHc--CCCCccc----HhHHHHHHhh
Confidence 99985 5799985 3366666654
No 5
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.92 E-value=6.2e-25 Score=217.44 Aligned_cols=158 Identities=28% Similarity=0.456 Sum_probs=131.1
Q ss_pred cccEEEECCCCccccccccccccccCCce-eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHH
Q 004012 8 EEHLDVLTMTGQKTGITKPRSEVHRVGDY-HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISA 86 (779)
Q Consensus 8 ~E~~~vvd~~~~~~G~~~~R~~~h~~g~~-hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAA 86 (779)
+|+++|||++++++|. ++|+.+|.+|.+ |++|+++|++ .+++|||+||+..+..+||.|++|+||++++|||+.+||
T Consensus 1 ~e~~~~~d~~~~~~g~-~~r~~~~~~~~~~~~~v~v~i~~-~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa 78 (165)
T cd02885 1 EELVILVDEDDNPIGT-AEKLEAHLKGTLLHRAFSVFLFN-SKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAA 78 (165)
T ss_pred CcEEEEECCCCCCccc-cCHHHHhhcCCcceeEEEEEEEc-CCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHH
Confidence 5899999999999996 889999999998 9999999998 578999999999888999999998899999999999999
Q ss_pred HHHHHHHhCCccCCCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhc
Q 004012 87 QRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAK 166 (779)
Q Consensus 87 lREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~ 166 (779)
+||++||||+.+....+. ++.+.+.....++ ...+.+.++|.+..... ..++++|+.+++|++++++.+++.+
T Consensus 79 ~REl~EEtGl~~~~~~~~-~~~~~~~~~~~~~-~~~~~i~~~f~~~~~~~-----~~~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 79 QRRLREELGITGDLLELV-LPRFRYRAPDDGG-LVEHEIDHVFFARADVT-----LIPNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred HHHHHHHhCCCccchhhc-cceEEEEEEcCCC-ceeeEEEEEEEEEeCCC-----CCCCccceeEEEEECHHHHHHHHHh
Confidence 999999999997643332 2444443322222 23456778887765432 2457789999999999999999999
Q ss_pred CCCCcccC
Q 004012 167 DDPSFVPY 174 (779)
Q Consensus 167 ~~~~f~p~ 174 (779)
++..|+||
T Consensus 152 ~~~~~~~~ 159 (165)
T cd02885 152 APEAFTPW 159 (165)
T ss_pred CchhcCHH
Confidence 88899999
No 6
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.92 E-value=1.3e-24 Score=226.39 Aligned_cols=167 Identities=26% Similarity=0.415 Sum_probs=136.0
Q ss_pred ccccccccEEEECCCCcccccccccccccc------CCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccC
Q 004012 3 ESVVQEEHLDVLTMTGQKTGITKPRSEVHR------VGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHI 76 (779)
Q Consensus 3 ~~~~~~E~~~vvd~~~~~~G~~~~R~~~h~------~g~~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~v 76 (779)
.+.|++|.++|||++++++|. .+|..+|. .|.+||+++|+|+| .+|+||||||+..|..|||+|+++||||+
T Consensus 17 ~~~~~~e~v~lvDe~d~~~G~-~~r~~~H~~~~~~~~gl~Hra~~v~i~n-~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp 94 (247)
T PLN02552 17 RRLMFEDECILVDENDNVVGH-DSKYNCHLFEKIEPRGLLHRAFSVFLFN-SKYELLLQQRAATKVTFPLVWTNTCCSHP 94 (247)
T ss_pred HhhhhcCeEEEEcCCCCEEee-eEHhhhhccccccCCCceEEEEEEEEEc-CCCeEEEEEecCCCCCCCcceecccCCcc
Confidence 356778999999999999997 68999985 89999999999999 57899999999999999999999999999
Q ss_pred CCCCC-----------------HHHHHHHHHHHHhCCccC---CCCeEEEEEEEeeccc-----CCCcccceEEEEEEEE
Q 004012 77 SAGDS-----------------SLISAQRELQEELGINLP---KDAFEFVFTFLQQNVI-----NDGKFINNEFADVYLV 131 (779)
Q Consensus 77 e~GEt-----------------~~eAAlREl~EEtGl~v~---~~~l~~l~~~~~~~~~-----~~g~~~~~e~~~vf~~ 131 (779)
..||+ +.+||+||++|||||.+. ..++..++++.+.... +++.+.++++.++|+.
T Consensus 95 ~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~ 174 (247)
T PLN02552 95 LYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI 174 (247)
T ss_pred ccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE
Confidence 88754 578999999999999953 2347777776665432 2355566788888765
Q ss_pred EEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh-cCCCCcccC
Q 004012 132 TTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA-KDDPSFVPY 174 (779)
Q Consensus 132 ~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~-~~~~~f~p~ 174 (779)
..... ..+.++++|+.+++|++++++.+++. ..+..|+||
T Consensus 175 ~~~~~---~~l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tpw 215 (247)
T PLN02552 175 RPVRD---VKVNPNPDEVADVKYVNREELKEMMRKESGLKLSPW 215 (247)
T ss_pred EecCC---CcccCCHHHhheEEEEeHHHHHHHHhhcCCcccCHH
Confidence 33222 23688999999999999999999886 445678998
No 7
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.91 E-value=6e-24 Score=214.17 Aligned_cols=161 Identities=24% Similarity=0.393 Sum_probs=131.0
Q ss_pred cccccEEEECCCCccccccccccccc-cCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHH
Q 004012 6 VQEEHLDVLTMTGQKTGITKPRSEVH-RVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI 84 (779)
Q Consensus 6 ~~~E~~~vvd~~~~~~G~~~~R~~~h-~~g~~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~e 84 (779)
+.+|+|+|||++++++|. ++|..+| +.|.+|++++++|++ ++++|||+||+..+..+||.|++|+||++++|||+.+
T Consensus 3 ~~~E~~~~vd~~~~~~g~-~~r~~~~~~~~~~h~av~v~i~~-~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~ 80 (184)
T PRK03759 3 METELVVLLDEQGVPTGT-AEKAAAHTADTPLHLAFSCYLFD-ADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLED 80 (184)
T ss_pred CCceeEEEECCCCCCccc-ccHHHHHhcCCCeeeEEEEEEEc-CCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHH
Confidence 567999999999999996 7899999 489999999999998 5789999999988888999999999999999999999
Q ss_pred HHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004012 85 SAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (779)
Q Consensus 85 AAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l 164 (779)
||+||++||||+++... ...++.+.+......+ ...+++.++|.+.... .+.++++|+.++.|+|++++.+++
T Consensus 81 aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~vf~~~~~~-----~~~~~~~Ev~~~~W~~~~el~~~i 153 (184)
T PRK03759 81 AVIRRCREELGVEITDL-ELVLPDFRYRATDPNG-IVENEVCPVFAARVTS-----ALQPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred HHHHHHHHHhCCCcccc-ccccceEEEEEecCCC-ceeeEEEEEEEEEECC-----CCCCChhHeeeEEEECHHHHHHHH
Confidence 99999999999986421 1123333332222223 2345677788887642 236677899999999999999999
Q ss_pred hcCCCCcccCC
Q 004012 165 AKDDPSFVPYD 175 (779)
Q Consensus 165 ~~~~~~f~p~~ 175 (779)
.+++..|+||.
T Consensus 154 ~~~~~~~~~~l 164 (184)
T PRK03759 154 DATPWAFSPWM 164 (184)
T ss_pred HhCCcccChHH
Confidence 99888999994
No 8
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.91 E-value=7e-24 Score=208.52 Aligned_cols=153 Identities=28% Similarity=0.460 Sum_probs=125.9
Q ss_pred EEEECCCCccccccccccccc-cCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHH
Q 004012 11 LDVLTMTGQKTGITKPRSEVH-RVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRE 89 (779)
Q Consensus 11 ~~vvd~~~~~~G~~~~R~~~h-~~g~~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlRE 89 (779)
++|||++++++|. +.|..+| ..|.+|++++++|++ .+|+|||+||+..+..+||+|++|+||+++.|| .+||+||
T Consensus 1 ~~~~d~~~~~~g~-~~r~~~~~~~g~~h~~v~v~v~~-~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~RE 76 (158)
T TIGR02150 1 VILVDENDNPIGT-ASKAEVHLQETPLHRAFSVFLFN-EEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRR 76 (158)
T ss_pred CEEECCCCCEeee-eeHHHhhhcCCCeEEEEEEEEEc-CCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHH
Confidence 5899999999997 6788888 579999999999998 578999999999999999999999899999999 4999999
Q ss_pred HHHHhCCccCCCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCC
Q 004012 90 LQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDP 169 (779)
Q Consensus 90 l~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~~~ 169 (779)
++|||||.+....+..++.+.+.....+| .+++.++|.+..+. .+.++++|+++++|++++++.+++...+.
T Consensus 77 l~EE~Gl~~~~~~l~~~~~~~~~~~~~~g---~~~~~~~f~~~~~~-----~~~~~~~Ev~~~~W~~~~el~~~~~~~~~ 148 (158)
T TIGR02150 77 LREELGIPADDVPLTVLPRFSYRARDAWG---EHELCPVFFARAPV-----PLNPNPEEVAEYRWVSLEELKEILKAPWA 148 (158)
T ss_pred HHHHHCCCccccceEEcceEEEEEecCCC---cEEEEEEEEEecCC-----cccCChhHeeeEEEeCHHHHHHHHhcCcc
Confidence 99999999765444455554443322223 25677888776543 24667789999999999999999998777
Q ss_pred CcccCC
Q 004012 170 SFVPYD 175 (779)
Q Consensus 170 ~f~p~~ 175 (779)
.++||.
T Consensus 149 ~~~p~~ 154 (158)
T TIGR02150 149 GFSPWF 154 (158)
T ss_pred ccCHhh
Confidence 899983
No 9
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.89 E-value=1.7e-23 Score=200.58 Aligned_cols=161 Identities=27% Similarity=0.434 Sum_probs=142.4
Q ss_pred cccccEEEECCCCcccccccccccccc-CCc-eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHH
Q 004012 6 VQEEHLDVLTMTGQKTGITKPRSEVHR-VGD-YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL 83 (779)
Q Consensus 6 ~~~E~~~vvd~~~~~~G~~~~R~~~h~-~g~-~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~ 83 (779)
++.|.+.++|.+|+++|. .+|..+|. .+. +|++++++||| .+|++||+||+..|.+|||.|+++|+||..+|||..
T Consensus 1 ~~~e~vill~~~d~~~G~-~~k~~~Ht~d~~~LHrAFS~~lFn-e~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~ 78 (185)
T COG1443 1 NMTEDVILLNDDDVPTGT-AEKLAAHTGDTPRLHRAFSSFLFN-ERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNE 78 (185)
T ss_pred CCceeEEEECCCCCcccc-chhhhhhccccHHHHhhhheeEEC-CCCceeeehhhhhcccCcccccccccCCCcCCCchH
Confidence 468999999999999996 89999995 556 69999999999 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccCC-CCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 84 ISAQRELQEELGINLPK-DAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 84 eAAlREl~EEtGl~v~~-~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
+|++|.+.+|+||.... ..+..+..+.|....++| +.++|++.|+.+...+. +.++++||.+++|++++++.+
T Consensus 79 ~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~-~~E~Eic~V~~~~~~~~-----~~~npdEV~~~~wv~~e~l~~ 152 (185)
T COG1443 79 DAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDG-IVENEICPVLAARLDSA-----LDPNPDEVMDYRWVSPEDLKE 152 (185)
T ss_pred HHHHHHHHHHhCCCCcccCccccccceEEeccCCCC-cceeeeeeEEEEeecCC-----CCCChHHhhheeccCHHHHHH
Confidence 99999999999999652 334556677887765554 68999999999987652 478899999999999999999
Q ss_pred HHhcCCCCcccC
Q 004012 163 LLAKDDPSFVPY 174 (779)
Q Consensus 163 ~l~~~~~~f~p~ 174 (779)
++...+..|+||
T Consensus 153 ~~~~~~~~fsPW 164 (185)
T COG1443 153 MVDATPWAFSPW 164 (185)
T ss_pred hhcCCceeeChH
Confidence 999988899999
No 10
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.86 E-value=5.9e-21 Score=191.73 Aligned_cols=149 Identities=26% Similarity=0.360 Sum_probs=119.6
Q ss_pred CccccccccEEEECCCCccccccccccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCC
Q 004012 2 AESVVQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDS 81 (779)
Q Consensus 2 ~~~~~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt 81 (779)
+.+.+..|+|+|||.+++++|. ++|..+|.+++.|+++.++|++ .+++|||++|+..+..+||.|+.|+||++++|||
T Consensus 3 ~~~~~~~e~~~~~d~~~~~~g~-~~~~~~~~~~~~h~~~~v~v~~-~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs 80 (180)
T PRK15393 3 QRRLASTEWVDIVNENNEVIAQ-ASREQMRAQCLRHRATYIVVHD-GMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ 80 (180)
T ss_pred CCCCCCceEEEEECCCCCEeeE-EEHHHHhhCCCceEEEEEEEEC-CCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC
Confidence 4577889999999999999998 5899999999999999999998 5789999999988888899998655999999999
Q ss_pred HHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHH
Q 004012 82 SLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (779)
Q Consensus 82 ~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~ 161 (779)
+.+||+||++||||+.+. .+..++.+.+.. . ....+.++|.+.... ...++++|+.+++|++++++.
T Consensus 81 ~~eAA~REL~EEtGl~~~--~~~~~~~~~~~~----~--~~~~~~~~f~~~~~~-----~~~~~~~E~~~~~W~~~~el~ 147 (180)
T PRK15393 81 LLESARREAEEELGIAGV--PFAEHGQFYFED----E--NCRVWGALFSCVSHG-----PFALQEEEVSEVCWMTPEEIT 147 (180)
T ss_pred HHHHHHHHHHHHHCCCCc--cceeceeEEecC----C--CceEEEEEEEEEeCC-----CCCCChHHeeEEEECCHHHHh
Confidence 999999999999999853 344455554321 1 122344566554322 236677899999999999998
Q ss_pred hHHh
Q 004012 162 NLLA 165 (779)
Q Consensus 162 ~~l~ 165 (779)
+++.
T Consensus 148 ~~~~ 151 (180)
T PRK15393 148 ARCD 151 (180)
T ss_pred hhhh
Confidence 8753
No 11
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.8e-20 Score=181.17 Aligned_cols=137 Identities=42% Similarity=0.717 Sum_probs=109.8
Q ss_pred eeEEEEEEEEecCC--CEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeec
Q 004012 36 YHRTVNAWIFAEST--QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQN 113 (779)
Q Consensus 36 ~hr~v~v~V~~~~~--gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~ 113 (779)
+|++|+|+|+|..+ ++||+++|+..+..+||.|++|+||++++|||+.+||+||++||||+.+....+..++.+.+..
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~ 80 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEY 80 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEec
Confidence 69999999999532 7999999999888999999997799999999999999999999999987655677777765543
Q ss_pred ccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCC
Q 004012 114 VINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYD 175 (779)
Q Consensus 114 ~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~~~~f~p~~ 175 (779)
.. .+....+.+.++|.+...... ..+.++++|+.+++|++++++.+++..++..|.||.
T Consensus 81 ~~-~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~ 139 (144)
T cd04692 81 DH-IGKLIDREFHHVYLYELKVPL--EEFTLQKEEVAGVVLIPLDEFAELLEEEDHKYQYYD 139 (144)
T ss_pred cc-cCCCccceEEEEEEEeccCCh--hhcCCChhHhheEEEECHHHHHHHHHcCCCCCCccc
Confidence 21 222233456678877764321 124567789999999999999999999999999994
No 12
>PLN02839 nudix hydrolase
Probab=99.81 E-value=4.6e-19 Score=190.90 Aligned_cols=191 Identities=19% Similarity=0.151 Sum_probs=156.2
Q ss_pred cccccEEEECCCC-ccccccccccccccCCceeEEEEEEEEecC--CCEEEEEEeCCCCCCCCCCeeccccccCCCCCCH
Q 004012 6 VQEEHLDVLTMTG-QKTGITKPRSEVHRVGDYHRTVNAWIFAES--TQELLLQRRADFKDSWPGMWDISSAGHISAGDSS 82 (779)
Q Consensus 6 ~~~E~~~vvd~~~-~~~G~~~~R~~~h~~g~~hr~v~v~V~~~~--~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~ 82 (779)
|++|+++|+...+ .+.. .++|+.+..+|+....||+..+... +.++|++||+..|.+|||+||+.+||++..||++
T Consensus 172 WRnE~y~V~~~~~~~~l~-~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp 250 (372)
T PLN02839 172 IRNELYPVKPSFNAPVFF-SLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISC 250 (372)
T ss_pred cccCccccccCCCCcceE-EEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCH
Confidence 8999999997644 4555 4799999999999999998877322 3479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccC-CCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHH
Q 004012 83 LISAQRELQEELGINLP-KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (779)
Q Consensus 83 ~eAAlREl~EEtGl~v~-~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~ 161 (779)
.+|++||+.||+||+.. ...+...|.+.|......+ ..++..++|.+.++.+.. ..++++||+++.+++++|+.
T Consensus 251 ~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g--~~~evly~YDLeLP~df~---P~~qDGEVe~F~Lm~v~EV~ 325 (372)
T PLN02839 251 GENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYC--FKRDVLFCYDLELPQDFV---PKNQDGEVESFKLIPVAQVA 325 (372)
T ss_pred HHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCc--cccCEEEEeeeecCCccc---cCCCccceeEEEEecHHHHH
Confidence 99999999999999843 2367788888876544443 345677789888866542 36788999999999999999
Q ss_pred hHHhcCCCCcccCCCCcchHHHHHHHHHH--hhhhhhhhHHHHHHHhhh
Q 004012 162 NLLAKDDPSFVPYDVNGGYGQLFNIISQR--YKENTMERSLTLQKQLRR 208 (779)
Q Consensus 162 ~~l~~~~~~f~p~~~~~~~~~~f~~l~~~--~~~~~~~r~~~L~~~l~r 208 (779)
+.+.+ ...|+|+| .-.+++++.++ +.+. .+.+.++..+|++
T Consensus 326 ~~l~~-~~~fKpn~----aLViiDFLiRhG~Itpe-~p~y~ei~~rlh~ 368 (372)
T PLN02839 326 NVIRK-TSFFKANC----SLVIIDFLFRHGFIRPE-SSGYLDLYRRLRN 368 (372)
T ss_pred HHHHc-CCCCCccc----HHHHHHHHHHcCCCCCC-CCCHHHHHHHhhc
Confidence 98875 24699987 45889999998 5555 4789999999886
No 13
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=8.1e-19 Score=171.36 Aligned_cols=159 Identities=30% Similarity=0.546 Sum_probs=136.9
Q ss_pred cccEEEECCCCccccccccccccc-----cCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCC--CCC
Q 004012 8 EEHLDVLTMTGQKTGITKPRSEVH-----RVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHIS--AGD 80 (779)
Q Consensus 8 ~E~~~vvd~~~~~~G~~~~R~~~h-----~~g~~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve--~GE 80 (779)
.|...+||++++++|. .++..|| ..|..||+++++++| .++++||+||+..|-+|||.|+.+|++|.- ++|
T Consensus 19 ~e~ci~VDenD~~IG~-~tk~~cHl~eni~kglLHRaFSVFlFn-s~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~e 96 (225)
T KOG0142|consen 19 AENCILVDENDNVIGA-GTKKNCHLMENIEKGLLHRAFSVFLFN-SKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGE 96 (225)
T ss_pred hhheEeeccccccccc-hhhhhhhcchhHHhhhhhheeeEEEec-CcchHHHhhhccccccccchhhhhhhcCcCCChhh
Confidence 3478899999999997 6889999 788999999999999 689999999999999999999999999975 332
Q ss_pred -------CHHHHHHHHHHHHhCCcc---CCCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCcccee
Q 004012 81 -------SSLISAQRELQEELGINL---PKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVS 150 (779)
Q Consensus 81 -------t~~eAAlREl~EEtGl~v---~~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~ 150 (779)
....||+|.+.-|+||+. +++++.+++.++|.... +|.|.+|++.++.++.- +.+ +.+++.||.
T Consensus 97 l~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~s-dg~wGEhEiDYiL~~~~--~~~---~nPnpnEv~ 170 (225)
T KOG0142|consen 97 LEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPS-DGIWGEHEIDYILFLVK--DVT---LNPNPNEVS 170 (225)
T ss_pred hccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCC-CCCcccceeeEEEEEec--cCC---CCCChhhhh
Confidence 467899999999999984 34678899999988754 57788999987766653 433 578889999
Q ss_pred eEEEeCHHHHHhHHhcCCCCcccC
Q 004012 151 AVKYIAYEEYKNLLAKDDPSFVPY 174 (779)
Q Consensus 151 e~~Wv~~eEl~~~l~~~~~~f~p~ 174 (779)
+++|++.+|+++++......|+||
T Consensus 171 e~ryvs~eelkel~~~~~~~~TPW 194 (225)
T KOG0142|consen 171 EIRYVSREELKELVAKASAGFTPW 194 (225)
T ss_pred HhheecHHHHHHHHhccccCCChH
Confidence 999999999999999888889999
No 14
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.1e-17 Score=156.01 Aligned_cols=122 Identities=37% Similarity=0.681 Sum_probs=92.5
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
++|.+++++ .+|+|||+||+..+..+||.|++|+||++++|||+ +||+||++||||+.+....+..++++.+.. .
T Consensus 1 ~~v~v~~~~-~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~---~ 75 (127)
T cd04693 1 LVVHVCIFN-SKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEA---E 75 (127)
T ss_pred CeEEEEEEe-CCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeec---C
Confidence 367888888 57899999999888889999999889999999999 999999999999997655566666554422 1
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccC
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 174 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~~~~f~p~ 174 (779)
+ +....+|.+.... ....++++|+.+++|++++++.+++.+ +.++||
T Consensus 76 ~----~~~~~~~~~~~~~----~~~~~~~~E~~~~~w~~~~el~~~~~~--~~~~~~ 122 (127)
T cd04693 76 G----FDDYYLFYADVEI----GKLILQKEEVDEVKFVSKDEIDGLIGH--GEFTPY 122 (127)
T ss_pred C----eEEEEEEEecCcc----cccccCHHHhhhEEEeCHHHHHHHHhc--CCcccc
Confidence 2 1223334333211 124566789999999999999999875 447776
No 15
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=6.4e-17 Score=152.87 Aligned_cols=121 Identities=32% Similarity=0.525 Sum_probs=94.7
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
+++++++++ .+++|||++|+..+..+||+|++|+||++++||++.+||+||++||||+++. .+..++.+.+.. .
T Consensus 1 ~~~~v~i~~-~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~--~l~~~~~~~~~~---~ 74 (126)
T cd04697 1 RATYIFVFN-SEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV--QLTPLGLFYYDT---D 74 (126)
T ss_pred CeEEEEEEc-CCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcc--ccEEeeEEEecC---C
Confidence 478999998 5789999999988888999999976999999999999999999999999864 566667665432 1
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccC
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 174 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~~~~f~p~ 174 (779)
+ .....++|.+....+ +.++++|+.+++|++++++.+++..+ .|.|-
T Consensus 75 ~---~~~~~~~f~~~~~~~-----~~~~~~E~~~~~w~~~~el~~~~~~~--~~~~~ 121 (126)
T cd04697 75 G---NRVWGKVFSCVYDGP-----LKLQEEEVEEITWLSINEILQFKEGE--NITPD 121 (126)
T ss_pred C---ceEEEEEEEEEECCC-----CCCCHhHhhheEEcCHHHHHHHhhcC--cccCC
Confidence 1 234456777665322 35677899999999999999987753 35553
No 16
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=8.2e-16 Score=144.27 Aligned_cols=113 Identities=27% Similarity=0.412 Sum_probs=85.6
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCC-CCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeeccc
Q 004012 37 HRTVNAWIFAESTQELLLQRRADF-KDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~-k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~ 115 (779)
|.++.+++++ +|+|||++|+.. +..+||.|++| ||+++.|||+.+||+||++||||+.+....+.....+..
T Consensus 1 ~~v~~~~~~~--~g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~---- 73 (122)
T cd04682 1 SGVALALLIG--DGRLLLQLRDDKPGIPYPGHWDLP-GGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS---- 73 (122)
T ss_pred CceEEEEEEc--CCEEEEEEccCCCCCCCCCcEeCC-CccccCCCCHHHHHHHHHHHHhCCcccccccceeEeccc----
Confidence 4567777766 489999999876 67899999999 999999999999999999999999975433333332221
Q ss_pred CCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 116 ~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
. ......++|.+...... ....+++|+.++.|++++++.+.
T Consensus 74 ~----~~~~~~~~f~~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 74 A----SPPGTEHVFVVPLTARE---DAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred C----CCCceEEEEEEEEecCC---CccccCchhheeecccHHHHhhc
Confidence 1 12346778888775442 13566789999999999999664
No 17
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.64 E-value=3.1e-15 Score=147.09 Aligned_cols=119 Identities=15% Similarity=0.232 Sum_probs=85.7
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEE--eecc
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL--QQNV 114 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~--~~~~ 114 (779)
+.+|.++|++ .+++|||+||+.. ..+|.|++| ||++++|||+.+||+||++||||+.+.......++.+. +...
T Consensus 17 ~~~v~~vI~~-~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~ 92 (159)
T PRK15434 17 LISLDFIVEN-SRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDN 92 (159)
T ss_pred eEEEEEEEEC-CCCEEEEEEccCC--CCCCcEECC-ceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccc
Confidence 4588888887 4689999999853 468999999 99999999999999999999999986433223333322 2111
Q ss_pred cCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 115 INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 115 ~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.+++.+..+.+..+|.+....+ .+.++++|+.+++|++++++.+.
T Consensus 93 ~~~~~~~~~~i~~~f~~~~~~g----~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 93 FSGTDFTTHYVVLGFRLRVAEE----DLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred cCCCccceEEEEEEEEEEecCC----cccCChHHeeEEEEEeHHHhhhc
Confidence 1122223355667777776443 23556679999999999999764
No 18
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.64 E-value=1.5e-15 Score=146.12 Aligned_cols=117 Identities=24% Similarity=0.387 Sum_probs=79.1
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEE--e-ec
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL--Q-QN 113 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~--~-~~ 113 (779)
++++.|++++ .+++|||+||+..+..+||.|++| ||++++|||+.+||+||++||||+.+....+... .+. . ..
T Consensus 3 ~r~~~~~ii~-~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~-~~~~~~~~~ 79 (141)
T PRK15472 3 QRTIVCPLIQ-NDGAYLLCKMADDRGVFPGQWALS-GGGVEPGERIEEALRREIREELGEQLLLTEITPW-TFRDDIRTK 79 (141)
T ss_pred ceeEEEEEEe-cCCEEEEEEecccCCCCCCceeCC-cccCCCCCCHHHHHHHHHHHHHCCceeeeeeccc-cccccceeE
Confidence 5678888887 478999999998888899999999 9999999999999999999999998643222211 110 0 00
Q ss_pred ccCCCcccceEEEEEE---EEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 114 VINDGKFINNEFADVY---LVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 114 ~~~~g~~~~~e~~~vf---~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.+.+|. ...+.++| .+..... .+.+ .+|+.+++|++++++.++
T Consensus 80 ~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~-~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 80 TYADGR--KEEIYMIYLIFDCVSANR----DVKI-NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred EecCCC--ceeEEEEEEEEEeecCCC----cccC-ChhhheEEEccHHHhccc
Confidence 111221 11223333 2322111 1233 379999999999999764
No 19
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.63 E-value=5.7e-15 Score=143.06 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=85.2
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecc--c
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV--I 115 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~--~ 115 (779)
.+|+++|+| .+|+|||+||... .++|+|.+| ||+++.|||+.+||+||++||||+.+....++.++.+..... .
T Consensus 13 v~v~~vI~~-~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~ 88 (144)
T cd03430 13 VSIDLIVEN-EDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNF 88 (144)
T ss_pred EEEEEEEEe-CCCeEEEEEccCC--CCCCcEECC-CceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccc
Confidence 478888888 4689999999763 468999999 999999999999999999999999976543344444432111 1
Q ss_pred CCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 116 ~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.......+.+..+|.+...... +..+++|+.+++|++++++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 89 FGDDFSTHYVVLGYVLKLSSNE----LLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred ccCCCccEEEEEEEEEEEcCCc----ccCCchhccEeEEecHHHHhcC
Confidence 1111123456666767654332 2456689999999999999753
No 20
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=7.2e-15 Score=138.27 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=83.9
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccC
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~ 116 (779)
+.+++++|++ .+++|||++|+.. ..+|.|++| ||++++|||+.+||+||++||||+.+... ..++.+.+.....
T Consensus 2 ~~~~~~~i~~-~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~eaa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~ 75 (125)
T cd04679 2 RVGCGAAILR-DDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEAVEDAVVREIEEETGLSIHST--RLLCVVDHIIEEP 75 (125)
T ss_pred ceEEEEEEEC-CCCEEEEEEecCC--CCCCeEeCC-eeeccCCCCHHHHHHHHHHHHHCCCcccc--eEEEEEeecccCC
Confidence 4578888988 4689999999753 347999999 99999999999999999999999997543 3444333221111
Q ss_pred CCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l 164 (779)
..+.+..+|.+....... ...+++|+.+++|++++++.+.+
T Consensus 76 ----~~~~~~~~f~~~~~~~~~---~~~~~~E~~~~~W~~~~~l~~~l 116 (125)
T cd04679 76 ----PQHWVAPVYLAENFSGEP---RLMEPDKLLELGWFALDALPQPL 116 (125)
T ss_pred ----CCeEEEEEEEEeecCCcc---ccCCCccccEEEEeCHHHCCchh
Confidence 134567778776644322 23455799999999999996543
No 21
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=7.6e-15 Score=136.89 Aligned_cols=115 Identities=22% Similarity=0.433 Sum_probs=82.8
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
+|.++|++ +++|||+||...+ .++|.|++| ||++++|||+.+||+||++||||+.+....+..++.+.... ..
T Consensus 2 ~v~~vi~~--~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~---~~ 74 (120)
T cd04683 2 AVYVLLRR--DDEVLLQRRANTG-YMDGQWALP-AGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRT---ED 74 (120)
T ss_pred cEEEEEEE--CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecC---CC
Confidence 46677776 5899999997653 458999999 99999999999999999999999997654566666554322 11
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
..+.+..+|.+......+ ...+++|+.+++|+|++++...+.
T Consensus 75 --~~~~~~~~f~~~~~~~~~---~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 75 --IESRIGLFFTVRRWSGEP---RNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred --CceEEEEEEEEEeecCcc---ccCCCCcEeeEEEEchHHCcchhc
Confidence 123445555555433221 234557899999999999976543
No 22
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.60 E-value=7.1e-15 Score=144.46 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=86.2
Q ss_pred eEEEEEEEEecC-CCEEEEEEeCCCCCCCCCCeeccccccCCCC-CCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecc
Q 004012 37 HRTVNAWIFAES-TQELLLQRRADFKDSWPGMWDISSAGHISAG-DSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV 114 (779)
Q Consensus 37 hr~v~v~V~~~~-~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~G-Et~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~ 114 (779)
|.+|.+++++.+ +++|||+||+..+..+||.|++| ||++++| ||+.+||+||++||||+++. .+..++.+.....
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs~~eaa~REl~EEtGl~~~--~~~~l~~~~~~~~ 78 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDEDPVATALREAEEEIGLPPD--SVEVLGRLPPYYT 78 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCCHHHHHHHHHHHHhCCCcc--ceEEEEECCCccc
Confidence 567888888743 25899999998877899999999 9999999 99999999999999999864 3555554432111
Q ss_pred cCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 115 INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 115 ~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
. . ...+++|.+....+. .+.++++|+.++.|++++++.+.
T Consensus 79 ~-~-----~~~v~~~~~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 79 R-S-----GFVVTPVVGLVPPPL---PLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred c-C-----CCEEEEEEEEECCCC---CCCCCHHHhheeEEEcHHHHhCc
Confidence 1 1 224455666554321 24667789999999999999764
No 23
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.59 E-value=9.3e-15 Score=137.75 Aligned_cols=122 Identities=27% Similarity=0.473 Sum_probs=90.9
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeeccc
Q 004012 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (779)
Q Consensus 36 ~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~ 115 (779)
+|++|+++|++ .+++|||+||+..+..++|.|.+| ||++++|||+.+||+||+.||||+.+.. ....+.+.+....
T Consensus 1 ~~~~v~~ii~~-~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~~~~aa~REl~EE~g~~~~~--~~~~~~~~~~~~~ 76 (134)
T PF00293_consen 1 WRRAVGVIIFN-EDGKVLLIKRSRSPITFPGYWELP-GGGIEPGESPEEAARRELKEETGLDVSP--LELLGLFSYPSPS 76 (134)
T ss_dssp EEEEEEEEEEE-TTTEEEEEEESTTSSSSTTEEESS-EEEECTTSHHHHHHHHHHHHHHSEEEEE--EEEEEEEEEEETT
T ss_pred CCCEEEEEEEe-CCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCchhhhHHhhhhhcccceecc--cccceeeeecccC
Confidence 58999999999 466999999998766688999999 9999999999999999999999999733 3333444333221
Q ss_pred CCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhc
Q 004012 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAK 166 (779)
Q Consensus 116 ~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~ 166 (779)
..+ .....++|.+.+..... ....+..|+.++.|++++++.++...
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~ 122 (134)
T PF00293_consen 77 GDP---EGEIVIFFIAELPSEQS--EIQPQDEEISEVKWVPPDELLELLLN 122 (134)
T ss_dssp TES---SEEEEEEEEEEEEEEES--ECHTTTTTEEEEEEEEHHHHHHHHHT
T ss_pred CCc---ccEEEEEEEEEEeCCcc--ccCCCCccEEEEEEEEHHHhhhchhC
Confidence 111 13456666666544321 23455569999999999999998763
No 24
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.59 E-value=1.8e-14 Score=135.23 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=83.5
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
++.++|++ +++|||++|+..+ ++|.|.+| ||+++.|||+.+||+||++||||+.+.. +..++.+.+....+.+
T Consensus 2 ~~~~ii~~--~~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~ 74 (128)
T cd04684 2 GAYAVIPR--DGKLLLIQKNGGP--YEGRWDLP-GGGIEPGESPEEALHREVLEETGLTVEI--GRRLGSASRYFYSPDG 74 (128)
T ss_pred eeEEEEEe--CCEEEEEEccCCC--CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCcEeec--ceeeeEEEEEEECCCC
Confidence 46677777 4899999998754 68999999 9999999999999999999999998654 4444544332221222
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
....+.+.++|.+....+... .....+|+.++.|++++++...
T Consensus 75 ~~~~~~~~~~f~~~~~~~~~~--~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 75 DYDAHHLCVFYDARVVGGALP--VQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred CeeccEEEEEEEEEEecCccc--cCCCCCCceeeEEECHHHhhcc
Confidence 112356778888877544310 1345578899999999999754
No 25
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=2.7e-14 Score=138.24 Aligned_cols=128 Identities=24% Similarity=0.360 Sum_probs=87.4
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCC--eEEEEEEE--eecc
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDA--FEFVFTFL--QQNV 114 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~--l~~l~~~~--~~~~ 114 (779)
+|++++++ .+++|||+||+..+..+||+|++| |||+++||++.+||+||++||+|+.+.... .+.++.+. +...
T Consensus 3 ~v~viv~~-~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~ 80 (143)
T cd04694 3 GVAVLLQS-SDQKLLLTRRASSLRIFPNVWVPP-GGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPL 80 (143)
T ss_pred EEEEEEEc-CCCEEEEEEECCCCCCCCCeEECc-ccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccc
Confidence 67788888 578999999998777899999999 999999999999999999999999865321 24444432 2211
Q ss_pred cCCCcccceEEEEEEEEEEcCCC---CCcCccCCccceeeEEEeCHHHHHhHHhcCCC
Q 004012 115 INDGKFINNEFADVYLVTTLNPI---PLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDP 169 (779)
Q Consensus 115 ~~~g~~~~~e~~~vf~~~~~~~~---~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~~~ 169 (779)
...+. .......+|++...... ....+.++++|+++++|++++++.+++....+
T Consensus 81 ~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~~~ 137 (143)
T cd04694 81 LSRGL-PKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAEDG 137 (143)
T ss_pred cCCCc-ccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhhcC
Confidence 12221 11222333333322111 01124566789999999999999998865443
No 26
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=2.5e-14 Score=133.29 Aligned_cols=113 Identities=21% Similarity=0.288 Sum_probs=80.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
++.++|++ +++|||+||... .++|.|.+| ||++++|||+.+||+||++||||+.+.. +..++.+.+....+++
T Consensus 2 ~v~~ii~~--~~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~ 74 (122)
T cd04673 2 AVGAVVFR--GGRVLLVRRANP--PDAGLWSFP-GGKVELGETLEQAALRELLEETGLEAEV--GRLLTVVDVIERDAAG 74 (122)
T ss_pred cEEEEEEE--CCEEEEEEEcCC--CCCCeEECC-CcccCCCCCHHHHHHHHHHHhhCcEeee--ceeEEEEEEeeccCCC
Confidence 46677777 479999999753 468999999 9999999999999999999999999653 3344444332222222
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
....+.+.++|.+...... ...++|+.+++|++++++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-----~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 75 RVEFHYVLIDFLCRYLGGE-----PVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred ccceEEEEEEEEEEeCCCc-----ccCCcccceeEEECHHHHhhC
Confidence 2223456667777654331 234579999999999999764
No 27
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=3e-14 Score=132.97 Aligned_cols=109 Identities=26% Similarity=0.444 Sum_probs=79.5
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
.++++ +++ +++|||+||+..+..++|.|++| ||++++|||+.+||+||++||||+++ ..+..+..+... .
T Consensus 2 ~v~~v-i~~--~~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~--~~~~~l~~~~~~----~ 71 (117)
T cd04691 2 GVVGV-LFS--DDKVLLERRSLTKNADPGKLNIP-GGHIEAGESQEEALLREVQEELGVDP--LSYTYLCSLYHP----T 71 (117)
T ss_pred eEEEE-EEE--CCEEEEEEeCCCCCCCCCeEECc-ceeecCCCCHHHHHHHHHHHHHCCCc--ccceEEEEEecc----C
Confidence 34444 455 48999999987766789999999 99999999999999999999999985 234555544331 1
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
+ .....++|.+..... .+..+|+.++.|++++++.....
T Consensus 72 ~---~~~~~~~~~~~~~~~------~~~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 72 S---ELQLLHYYVVTFWQG------EIPAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred C---CeEEEEEEEEEEecC------CCCcccccccEEcCHHHcchhhh
Confidence 1 124556676665432 22337999999999999976654
No 28
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.57 E-value=5.1e-14 Score=136.08 Aligned_cols=124 Identities=24% Similarity=0.356 Sum_probs=89.5
Q ss_pred cccCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEE
Q 004012 30 VHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTF 109 (779)
Q Consensus 30 ~h~~g~~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~ 109 (779)
-|+....-++++++|++ .++++||++|... ..+|.|++| ||++++|||+.+||+||++||||+++.. +..++.+
T Consensus 6 ~~~~~~~~~av~~vv~~-~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl~~~~--~~~~~~~ 79 (142)
T cd04700 6 RHHVEVEARAAGAVILN-ERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEFPQDAAVREACEETGLRVRP--VKFLGTY 79 (142)
T ss_pred ccCcceeeeeEEEEEEe-CCCcEEEEEEcCC--CCCCeEECC-ceecCCCCCHHHHHHHHHHHhhCceeec--cEEEEEE
Confidence 34555566789999998 4678999887643 357999999 9999999999999999999999999643 4555555
Q ss_pred EeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004012 110 LQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (779)
Q Consensus 110 ~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~ 167 (779)
.... +.+ .....++|.+....... . ....+|+.+++|++++++.+++.++
T Consensus 80 ~~~~--~~~---~~~~~~~f~~~~~~~~~--~-~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 80 LGRF--DDG---VLVLRHVWLAEPEGQTL--A-PKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred EEEc--CCC---cEEEEEEEEEEecCCcc--c-cCCCCCEEEEEEECHHHhhhccccc
Confidence 4322 222 12355778777643211 1 1123799999999999999887653
No 29
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.57 E-value=6.2e-14 Score=136.12 Aligned_cols=122 Identities=20% Similarity=0.340 Sum_probs=82.8
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEE----Ee
Q 004012 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTF----LQ 111 (779)
Q Consensus 36 ~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~----~~ 111 (779)
+|.++++++++ .+++|||+||+..+ |.|++| ||++++||++.+||+||++||||+.+.. +..++.. .|
T Consensus 2 ~~~~v~~ii~~-~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~~~~aA~REv~EEtGl~~~~--~~~l~~~~~~~~y 73 (147)
T cd03671 2 YRPNVGVVLFN-EDGKVFVGRRIDTP----GAWQFP-QGGIDEGEDPEQAALRELEEETGLDPDS--VEIIAEIPDWLRY 73 (147)
T ss_pred CCceEEEEEEe-CCCEEEEEEEcCCC----CCEECC-cCCCCCCcCHHHHHHHHHHHHHCCCcCc--eEEEEEcCCeeEe
Confidence 35688888988 46899999998753 899999 9999999999999999999999999654 3333322 22
Q ss_pred ecc--cCCCcc---cceEEEEEEEEEEcCCCCCcCccC-CccceeeEEEeCHHHHHhHHh
Q 004012 112 QNV--INDGKF---INNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 112 ~~~--~~~g~~---~~~e~~~vf~~~~~~~~~~~~i~~-~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
... ...+.+ ......++|.+..........+.. +++|+.+++|++++++.+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~ 133 (147)
T cd03671 74 DLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIV 133 (147)
T ss_pred eChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhch
Confidence 211 001111 012345667666644211111233 257999999999999987643
No 30
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=3.7e-14 Score=133.51 Aligned_cols=112 Identities=23% Similarity=0.382 Sum_probs=77.6
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
.++.++|++ .+++|||+||.. ++|.|.+| ||++++|||+.+||+||++||||+++....+..+..+.+.....+
T Consensus 3 ~~v~~~i~~-~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd04696 3 VTVGALIYA-PDGRILLVRTTK----WRGLWGVP-GGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHK 76 (125)
T ss_pred cEEEEEEEC-CCCCEEEEEccC----CCCcEeCC-ceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCC
Confidence 367888888 478999998753 57999999 999999999999999999999999875433322222222111111
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
..+.+..+|.+..... .+.. .+|+.+++|+|++++.++
T Consensus 77 ---~~~~~~~~~~~~~~~~----~~~~-~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 77 ---PAHFVLFDFFARTDGT----EVTP-NEEIVEWEWVTPEEALDY 114 (125)
T ss_pred ---ccEEEEEEEEEEecCC----cccC-CcccceeEEECHHHHhcC
Confidence 1244556666665322 1233 368999999999999664
No 31
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=3.6e-14 Score=134.18 Aligned_cols=122 Identities=20% Similarity=0.342 Sum_probs=86.4
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccC
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~ 116 (779)
+.++.++|++ .+++|||++|... .++|.|.+| ||+++.|||+.+||+||++||||+++.. +..++.+..... .
T Consensus 2 ~~~v~~ii~~-~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt~~~Aa~REl~EE~Gl~~~~--~~~~~~~~~~~~-~ 74 (129)
T cd04678 2 RVGVGVFVLN-PKGKVLLGKRKGS--HGAGTWALP-GGHLEFGESFEECAAREVLEETGLHIEN--VQFLTVTNDVFE-E 74 (129)
T ss_pred ceEEEEEEEC-CCCeEEEEeccCC--CCCCeEECC-cccccCCCCHHHHHHHHHHHHhCCcccc--eEEEEEEeEEeC-C
Confidence 3578899998 4689999999864 467999999 9999999999999999999999998643 444444332211 1
Q ss_pred CCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCccc
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVP 173 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~~~~f~p 173 (779)
. ..+.+..+|.+....+.. .....+++|+.+++|++++++.++ +..|+|
T Consensus 75 ~---~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~----~~~~~~ 123 (129)
T cd04678 75 E---GKHYVTIFVKAEVDDGEA-EPNKMEPEKCEGWEWFDWEELPSV----DPLFLP 123 (129)
T ss_pred C---CcEEEEEEEEEEeCCCCc-ccCCCCCceeCceEEeCHHHCCCc----chhhHH
Confidence 1 134566666666654321 101125678999999999999764 345666
No 32
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=2.8e-14 Score=134.97 Aligned_cols=111 Identities=20% Similarity=0.371 Sum_probs=80.3
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
+|.++|++ .+++|||++|...+ ++|.|++| ||+++.|||+.+||+||++||||+++. .+..++.+....... +
T Consensus 3 av~~~i~~-~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~-~ 75 (130)
T cd04681 3 AVGVLILN-EDGELLVVRRAREP--GKGTLDLP-GGFVDPGESAEEALIREIREETGLKVT--ELSYLFSLPNTYPYG-G 75 (130)
T ss_pred eEEEEEEc-CCCcEEEEEecCCC--CCCcEeCC-ceeecCCCCHHHHHHHHHHHHhCCccc--ceeEEEeecceeeeC-C
Confidence 67888888 46899999998643 58999999 999999999999999999999999864 455555543222111 1
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~ 161 (779)
...+.+..+|.+.+.... ...+.+|+.+++|++++++.
T Consensus 76 -~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 76 -MEYDTLDLFFVCQVDDKP----IVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred -ceeEEEEEEEEEEeCCCC----CcCChHHhheeEEecHHHCC
Confidence 122334445656654321 24556899999999999983
No 33
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.56 E-value=2.7e-14 Score=135.16 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=82.7
Q ss_pred EEEEEEEEecC--CCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEe--ec
Q 004012 38 RTVNAWIFAES--TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQ--QN 113 (779)
Q Consensus 38 r~v~v~V~~~~--~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~--~~ 113 (779)
|.|.+++++ . +++|||+||+.. ++|.|++| ||+++.|||+.+||+||++||||+.+.. +..+..... ..
T Consensus 2 ~~~~v~~~~-~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~~~~~ 74 (129)
T cd04664 2 RSVLVVPYR-LTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGESPAEAARREVAEETGLDPER--LTLLDRGASIAFV 74 (129)
T ss_pred cEEEEEEEE-eCCCCEEEEEEeCCC---CCCccccc-CcccCCCCCHHHHHHHHHHHHHCCChhh--eEEEeeccccccc
Confidence 578888887 4 689999999864 78999998 9999999999999999999999998643 333332210 01
Q ss_pred ccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 114 VINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 114 ~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
.....+ .+...++|.+.+.... ....++|+.++.|++++++.+++.
T Consensus 75 ~~~~~~--~~~~~~~f~~~~~~~~----~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 75 EFTDNG--RVWTEHPFAFHLPSDA----VVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred ccCCCc--eEEEEeEEEEEcCCCC----cccCCccccccEecCHHHHHHHHc
Confidence 111111 2345677877764432 123457999999999999987654
No 34
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.56 E-value=4.6e-14 Score=134.86 Aligned_cols=118 Identities=24% Similarity=0.299 Sum_probs=89.0
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccC
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~ 116 (779)
|++|.+++++ .++++||++|...+ ..++.|++| ||+++.|||+.+||+||++||||+.+. .+..++.+.+.
T Consensus 2 ~~~v~v~~~~-~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl~~~--~~~~~~~~~~~---- 72 (137)
T cd03424 2 PDAVAVLPYD-DDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGEDPEEAARRELEEETGYEAG--DLEKLGSFYPS---- 72 (137)
T ss_pred CCEEEEEEEc-CCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCCHHHHHHHHHHHHHCCCcc--ceEEEeeEecC----
Confidence 6789999998 46899998775442 357899999 999999999999999999999999974 46666655432
Q ss_pred CCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~ 167 (779)
.+ ..+...++|.+....... ...+++.|+.+++|++++++.+++..+
T Consensus 73 ~~--~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 73 PG--FSDERIHLFLAEDLSPGE--EGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred Cc--ccCccEEEEEEEcccccc--cCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 11 123356677776644321 135667899999999999999998853
No 35
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.56 E-value=4.8e-14 Score=136.88 Aligned_cols=116 Identities=20% Similarity=0.316 Sum_probs=81.1
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEE---EEee-
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFT---FLQQ- 112 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~---~~~~- 112 (779)
+.+|.+++++ .+++|||+||.. .||.|++| ||++++|||+.+||+||++||||+.+....+..+.. ..+.
T Consensus 7 ~~~v~~vi~~-~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 80 (148)
T PRK09438 7 PVSVLVVIYT-PDLGVLMLQRAD----DPDFWQSV-TGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEI 80 (148)
T ss_pred ceEEEEEEEe-CCCeEEEEEecC----CCCcEeCC-cccCCCCCCHHHHHHHHHHHHhCcCccccceeeccccccccccc
Confidence 4568888888 478999998864 26899999 999999999999999999999999873333332211 0010
Q ss_pred -----cccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 113 -----NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 113 -----~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
.....+ ..+...++|.+....+. .+..+|+.++.|++++++.++..
T Consensus 81 ~~~~~~~~~~~--~~~~~~~~f~~~~~~~~-----~~~~~E~~~~~W~~~~e~~~~~~ 131 (148)
T PRK09438 81 FPHWRHRYAPG--VTRNTEHWFCLALPHER-----PVVLTEHLAYQWLDAREAAALTK 131 (148)
T ss_pred chhhhhccccc--cCCceeEEEEEecCCCC-----ccccCcccceeeCCHHHHHHHhc
Confidence 011122 13456788887754321 23345999999999999988643
No 36
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=1.1e-13 Score=130.90 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=80.6
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
.++.++|++ +++|||+||... .++.|.+| ||+++.|||+.+||+||+.||||+.+...++..+..+........
T Consensus 2 ~~a~~iv~~--~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd04687 2 NSAKAVIIK--NDKILLIKHHDD---GGVWYILP-GGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSE 75 (128)
T ss_pred cEEEEEEEE--CCEEEEEEEEcC---CCCeEECC-CcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCcccc
Confidence 356677776 589999998643 24789999 999999999999999999999999986555555444432110001
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.....+.+.++|.+....+.........+.|..+++|++++++.++
T Consensus 76 ~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 76 LPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred CCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 1112456778888877544210000112245678999999999664
No 37
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.54 E-value=9.6e-14 Score=133.35 Aligned_cols=115 Identities=24% Similarity=0.311 Sum_probs=78.7
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEE-----EEEe
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF-----TFLQ 111 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~-----~~~~ 111 (779)
|.++++++++..+++|||+||+. .|.|.+| ||++++|||+.+||+||++||||+.+.. +.... .+..
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~~ 73 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDESLLEAALRELREETGIELLG--LRPLSVLVDLDVHP 73 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCCHHHHHHHHHHHHHCCCccc--ceeccccccceeEe
Confidence 88999999984338999998865 4899999 9999999999999999999999998643 22221 1111
Q ss_pred ec-ccCCCcccceEEEEEEEEEEcCCCCCcCcc-CCccceeeEEEeCHHHHHhH
Q 004012 112 QN-VINDGKFINNEFADVYLVTTLNPIPLEAFT-LQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 112 ~~-~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~-~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.. ....+....+.+..+|.+...... .. ++++|+.++.|++++++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~y~~~~~~~~----~~~~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 74 IDGHPKRGVPGHLHLDLRFLAVAPADD----VAPPKSDESDAVRWFPLDELASL 123 (138)
T ss_pred ecCCCCCCCCCcEEEEEEEEEEccCcc----ccCCCCCcccccEEEcHHHhhhc
Confidence 00 000000011234556777654332 12 36689999999999999653
No 38
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.53 E-value=1e-13 Score=130.63 Aligned_cols=114 Identities=23% Similarity=0.289 Sum_probs=81.2
Q ss_pred EEEEEEEEecCC--CEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeeccc
Q 004012 38 RTVNAWIFAEST--QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (779)
Q Consensus 38 r~v~v~V~~~~~--gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~ 115 (779)
.++++++++..+ ++|||++|... |.|.+| ||++++|||+.+||+||++||||+.+.. +..++.+.+....
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~ 73 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGETPPEAAVREVEEETGIRAEV--GDPLGTIRYWFSS 73 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCCHHHHHHHHHhhhhCCceEe--cceEEEEEEeccC
Confidence 356777777422 78999998653 899999 9999999999999999999999998653 3455555443322
Q ss_pred CCCcccceEEEEEEEEEEcCCCCCcCccC-CccceeeEEEeCHHHHHhHHh
Q 004012 116 NDGKFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 116 ~~g~~~~~e~~~vf~~~~~~~~~~~~i~~-~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
.++ ..+...++|.+...... ..+ +++|+.+++|+|++++.+.+.
T Consensus 74 ~~~--~~~~~~~~~~~~~~~~~----~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 74 SGK--RVHKTVHWWLMRALGGE----FTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred CCC--CcceEEEEEEEEEcCCC----cccCCCCcEEEEEEcCHHHHHHHcC
Confidence 211 13445666776654332 232 568999999999999987643
No 39
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.52 E-value=2e-13 Score=128.45 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=79.8
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccC
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~ 116 (779)
|..+.++|++ +++|||++|.. .+.|.+| ||++++|||+.+||+||++||||+++.. ...++.+.+....+
T Consensus 1 ~~~~~~vi~~--~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt~~~aa~REl~EEtGl~~~~--~~~l~~~~~~~~~~ 70 (125)
T cd04689 1 HLRARAIVRA--GNKVLLARVIG-----QPHYFLP-GGHVEPGETAENALRRELQEELGVAVSD--GRFLGAIENQWHEK 70 (125)
T ss_pred CeEEEEEEEe--CCEEEEEEecC-----CCCEECC-CCcCCCCCCHHHHHHHHHHHHhCceeec--cEEEEEEeeeeccC
Confidence 5678888876 68999998853 3689999 9999999999999999999999998643 44555443322222
Q ss_pred CCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHH
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~ 161 (779)
++ ..+.+.++|.+....+.. ......++|+.+++|++++++.
T Consensus 71 ~~--~~~~~~~~f~~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 71 GV--RTHEINHIFAVESSWLAS-DGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred Cc--eEEEEEEEEEEEcccccc-cCCccCccceEEEEEccHHHcc
Confidence 22 345667788777643321 1112345689999999999973
No 40
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.7e-13 Score=128.75 Aligned_cols=114 Identities=22% Similarity=0.359 Sum_probs=78.5
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
++.++|++ ++++|||+||...+..++|+|++| ||++++|||+.+||+||++||||+.+.. ...++..... . ..+
T Consensus 3 ~v~~vv~~-~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~~-~-~~~ 76 (129)
T cd04699 3 AVAALIVK-DVGRILILKRSKDERTAPGKWELP-GGKVEEGETFEEALKREVYEETGLTVTP--FLRYPSTVTH-E-DSG 76 (129)
T ss_pred eEEEEEEC-CCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCCHHHHHHHHHHHhhCcEEEe--eeeeeEEEEE-c-CCC
Confidence 46667777 458999999987766679999999 9999999999999999999999998643 2222212111 1 111
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
..+.+..+|.+..... ....++|+.+++|++++++..+..
T Consensus 77 --~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~w~~~~el~~~~~ 116 (129)
T cd04699 77 --VYNVIYLVFVCEALSG-----AVKLSDEHEEYAWVTLEELAILKA 116 (129)
T ss_pred --EEEEEEEEEEeeecCC-----cccCChhheEEEEecHHHhhhhhc
Confidence 1233445555443222 123456889999999999965544
No 41
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=99.51 E-value=4.3e-14 Score=142.11 Aligned_cols=198 Identities=16% Similarity=0.109 Sum_probs=158.0
Q ss_pred ccccccEEEECCCCccccccccccccccCCceeEEEEEEEE--ecCCC--EEEEEEeCCCCCCCCCCeeccccccCCCCC
Q 004012 5 VVQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIF--AESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGD 80 (779)
Q Consensus 5 ~~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hr~v~v~V~--~~~~g--kVLL~rRs~~k~~~pG~W~~PvGG~ve~GE 80 (779)
+|++|.+.|+ ++.++.=. ++|+....+|.+...|+|-.+ ++..+ .+|++|||+.|.+|||+||+-+||++..|-
T Consensus 101 qwrne~Y~v~-~~kkp~l~-vERa~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~ 178 (306)
T KOG4313|consen 101 QWRNELYTVY-KSKKPVLA-VERAATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGF 178 (306)
T ss_pred cccceeeEEE-ecCcceeE-eeecccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCc
Confidence 5788999999 77666643 699999999998888887554 43233 599999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCccC-CCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHH
Q 004012 81 SSLISAQRELQEELGINLP-KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEE 159 (779)
Q Consensus 81 t~~eAAlREl~EEtGl~v~-~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eE 159 (779)
.+.++|++|..||+.++.+ ..+|...|..+|-...+.. +..++..+||.+.++.+.- .+.+++|++.+..+++.|
T Consensus 179 gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~-~~~pe~qYVfDL~l~~d~i---P~~nDGEV~~F~Lltl~~ 254 (306)
T KOG4313|consen 179 GIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQ-GLFPETQYVFDLELPLDFI---PQNNDGEVQAFELLTLKD 254 (306)
T ss_pred hHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhh-ccCccceEEEeccCchhhc---CCCCCCceeeEeeecHHH
Confidence 9999999999999999963 3467777877654211221 2456789999998865532 256789999999999999
Q ss_pred HHhHHhcCCCCcccCCCCcchHHHHHHHHHH--hhhhhhhhHHHHHHHhhhhcccccc
Q 004012 160 YKNLLAKDDPSFVPYDVNGGYGQLFNIISQR--YKENTMERSLTLQKQLRRYAHVSLN 215 (779)
Q Consensus 160 l~~~l~~~~~~f~p~~~~~~~~~~f~~l~~~--~~~~~~~r~~~L~~~l~rf~pv~l~ 215 (779)
..+.+.. ..|+|.|.. .++++++++ .++ ..+.+.+...|++|.+|++..
T Consensus 255 ~v~~l~~--k~FKpncAl----V~iDflirHg~itp-~~p~yl~~l~rihr~lp~p~~ 305 (306)
T KOG4313|consen 255 CVERLFT--KDFKPNCAL----VVIDFLIRHGTITP-QHPQYLQTLERIHRPLPVPVG 305 (306)
T ss_pred HHHHHHh--hccCCCcce----EEEEEeecceecCC-CChhHHHHHHhccccCCcCCC
Confidence 9998874 579999864 567888887 334 567888888999999999864
No 42
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.50 E-value=1.5e-13 Score=131.15 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=79.7
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
++..++|.+ +++|||++|+..+ ++|.|.+| ||+++.|||+.+||+||++||||+.+.. +..++.+.+... .
T Consensus 2 ~~~~~~i~~--~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~--~ 72 (137)
T cd03427 2 LTTLCFIKD--PDKVLLLNRKKGP--GWGGWNGP-GGKVEPGETPEECAIRELKEETGLTIDN--LKLVGIIKFPFP--G 72 (137)
T ss_pred eEEEEEEEE--CCEEEEEEecCCC--CCCeEeCC-ceeCCCCCCHHHHHHHHHHHhhCeEeec--ceEEEEEEEEcC--C
Confidence 456677777 5899999998764 78999999 9999999999999999999999998754 344455544321 1
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
. ..+...++|.+...... .. ..+|..+++|++++++.++
T Consensus 73 ~--~~~~~~~~f~~~~~~~~----~~-~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 73 E--EERYGVFVFLATEFEGE----PL-KESEEGILDWFDIDDLPLL 111 (137)
T ss_pred C--CcEEEEEEEEECCcccc----cC-CCCccccceEEcHhhcccc
Confidence 0 13456677776543332 12 3456678999999999654
No 43
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=2.8e-13 Score=127.63 Aligned_cols=113 Identities=26% Similarity=0.319 Sum_probs=79.2
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccC
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~ 116 (779)
|++.++++.+ ++|||+||.. .+.|.+| ||+++.|||+.+||+||++||||+.+.. ...++.+.......
T Consensus 2 ~~v~~vi~~~---~~vLl~~~~~-----~~~w~lP-gG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~ 70 (126)
T cd04688 2 VRAAAIIIHN---GKLLVQKNPD-----ETFYRPP-GGGIEFGESSEEALIREFKEELGLKIEI--TRLLGVVENIFTYN 70 (126)
T ss_pred eEEEEEEEEC---CEEEEEEeCC-----CCeEECC-CccccCCCCHHHHHHHHHHHHhCCceec--ceeeEEEEEeeccC
Confidence 5666666643 5999998865 4799999 9999999999999999999999998654 33444332211111
Q ss_pred CCcccceEEEEEEEEEEcCCCCCc---CccCCccceeeEEEeCHHHHHh
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLE---AFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~---~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
+ ...+.+.++|.+....+.... ....+++|+.++.|++++++..
T Consensus 71 -~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 117 (126)
T cd04688 71 -G-KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKE 117 (126)
T ss_pred -C-cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHccc
Confidence 1 224567788888875543200 0012457999999999999964
No 44
>PLN02325 nudix hydrolase
Probab=99.50 E-value=3.3e-13 Score=130.80 Aligned_cols=117 Identities=16% Similarity=0.222 Sum_probs=79.7
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccC
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~ 116 (779)
..++.++|++ +++|||+||+... ..|.|.+| ||+++.|||+.+||+||++||||+.+.. +..++.+.......
T Consensus 9 ~~~v~~vi~~--~~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs~~~aa~REv~EEtGl~v~~--~~~l~~~~~~~~~~ 81 (144)
T PLN02325 9 RVAVVVFLLK--GNSVLLGRRRSSI--GDSTFALP-GGHLEFGESFEECAAREVKEETGLEIEK--IELLTVTNNVFLEE 81 (144)
T ss_pred eEEEEEEEEc--CCEEEEEEecCCC--CCCeEECC-ceeCCCCCCHHHHHHHHHHHHHCCCCcc--eEEEEEecceeecC
Confidence 4567777776 5799999998642 34899999 9999999999999999999999999754 34444432221111
Q ss_pred CCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.. ..+.+..+|.+...++.. .....+++|+.+++|+++++|...
T Consensus 82 ~~--~~~~i~~~f~~~~~~~~~-~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 82 PK--PSHYVTVFMRAVLADPSQ-VPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred CC--CcEEEEEEEEEEECCCCC-CCCcCCchhcCceEEEChHHCChh
Confidence 11 234455556565533211 112345567889999999999653
No 45
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.5e-13 Score=130.09 Aligned_cols=114 Identities=24% Similarity=0.398 Sum_probs=78.7
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEE----e
Q 004012 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL----Q 111 (779)
Q Consensus 36 ~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~----~ 111 (779)
.+.++.+++++ .+++|||++|+.. |.|++| ||++++|||+.+||+||++||||+.+.. +..++.+. +
T Consensus 6 ~~~~~~~~v~~-~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt~~~aa~REl~EE~Gi~~~~--~~~~~~~~~~~~~ 76 (132)
T cd04677 6 ILVGAGVILLN-EQGEVLLQKRSDT-----GDWGLP-GGAMELGESLEETARRELKEETGLEVEE--LELLGVYSGKEFY 76 (132)
T ss_pred cccceEEEEEe-CCCCEEEEEecCC-----CcEECC-eeecCCCCCHHHHHHHHHHHHhCCeeee--eEEEEEecCCcee
Confidence 46678888888 4689999998753 789999 9999999999999999999999998653 33333321 1
Q ss_pred ecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004012 112 QNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (779)
Q Consensus 112 ~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l 164 (779)
.. ..++. .+....+|.+...... .+..+.+|+.+++|++++++.+++
T Consensus 77 ~~-~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~e~~~~~ 123 (132)
T cd04677 77 VK-PNGDD--EQYIVTLYYVTKVFGG---KLVPDGDETLELKFFSLDELPELI 123 (132)
T ss_pred ec-CCCCc--EEEEEEEEEEEeccCC---cccCCCCceeeEEEEChhHCccch
Confidence 11 11221 1234444444432221 134566899999999999996654
No 46
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.5e-13 Score=127.84 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=78.8
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
++++++++ .++++||+||+.. +.|.+| ||++++|||+.+||+||++||||+.+. ..+..++.+.+.. .+
T Consensus 2 ~~~~~i~~-~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt~~~aa~REl~EEtG~~~~-~~~~~~~~~~~~~---~~ 70 (120)
T cd04680 2 GARAVVTD-ADGRVLLVRHTYG-----PGWYLP-GGGLERGETFAEAARRELLEELGIRLA-VVAELLGVYYHSA---SG 70 (120)
T ss_pred ceEEEEEC-CCCeEEEEEECCC-----CcEeCC-CCcCCCCCCHHHHHHHHHHHHHCCccc-cccceEEEEecCC---CC
Confidence 46788887 4689999998753 389999 999999999999999999999999975 1344555544322 11
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.....++|.+...... ...+++|+.+++|++++++.+.
T Consensus 71 ---~~~~~~~f~~~~~~~~----~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 71 ---SWDHVIVFRARADTQP----VIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred ---CceEEEEEEecccCCC----ccCCcccEEEEEEECHHHCccc
Confidence 2345677777654331 1456689999999999999653
No 47
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.48 E-value=7.6e-13 Score=129.99 Aligned_cols=118 Identities=18% Similarity=0.277 Sum_probs=81.7
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEE----Ee
Q 004012 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTF----LQ 111 (779)
Q Consensus 36 ~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~----~~ 111 (779)
+|.+|.++|++ .+|+|||+||... +|.|++| ||++++||++.+||.||++||||+.+. .+..++.+ .|
T Consensus 7 ~~~~v~~~i~~-~~g~vLL~~r~~~----~~~w~~P-~G~~~~gE~~~~aa~REl~EEtG~~~~--~~~~~~~~~~~~~y 78 (156)
T PRK00714 7 YRPNVGIILLN-RQGQVFWGRRIGQ----GHSWQFP-QGGIDPGETPEQAMYRELYEEVGLRPE--DVEILAETRDWLRY 78 (156)
T ss_pred CCCeEEEEEEe-cCCEEEEEEEcCC----CCeEECC-cccCCCCcCHHHHHHHHHHHHhCCCcc--ceEEEEEcCCeEEe
Confidence 56789999998 5789999999742 5899999 999999999999999999999999864 24444432 22
Q ss_pred eccc-----CCCcccceEEEEEEEEEEcCCCCCcCccC---CccceeeEEEeCHHHHHhHH
Q 004012 112 QNVI-----NDGKFINNEFADVYLVTTLNPIPLEAFTL---QQTEVSAVKYIAYEEYKNLL 164 (779)
Q Consensus 112 ~~~~-----~~g~~~~~e~~~vf~~~~~~~~~~~~i~~---~~~Ev~e~~Wv~~eEl~~~l 164 (779)
.... ....+.+ ...++|.+....... .+.+ +++|+.+++|++++++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~fl~~~~~~~~--~~~l~~~~~~E~~~~~W~~~del~~~~ 136 (156)
T PRK00714 79 DLPKRLVRRSKGVYRG-QKQKWFLLRLTGDDS--EINLNTTSHPEFDAWRWVSYWYPLDQV 136 (156)
T ss_pred cCcHHHhhccCCcccC-cEEEEEEEEecCCCc--cccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence 1110 0111111 245667666532211 1232 33699999999999998764
No 48
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.47 E-value=5.7e-13 Score=126.93 Aligned_cols=106 Identities=20% Similarity=0.353 Sum_probs=79.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
+|.+.+++ .+++|||+||... .+|.|++| ||+++.|||+.+||+||++||||+.+. .+..++...+..
T Consensus 2 ~v~i~l~~-~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt~~~aA~REl~EEtGl~~~--~~~~l~~~~~~~----- 69 (131)
T cd03429 2 AVIVLVID-GGDRILLARQPRF---PPGMYSLL-AGFVEPGESLEEAVRREVKEEVGIRVK--NIRYVGSQPWPF----- 69 (131)
T ss_pred eEEEEEEe-CCCEEEEEEecCC---CCCcCcCC-cccccCCCCHHHHHhhhhhhccCceee--eeEEEeecCCCC-----
Confidence 56677777 4589999998642 26899999 999999999999999999999999863 355554432211
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.+.+..+|.+..... .+..+++|+.++.|+|++++.++
T Consensus 70 ---~~~~~~~f~~~~~~~----~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 70 ---PSSLMLGFTAEADSG----EIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ---CceEEEEEEEEEcCC----cccCCchhhhccEeecHHHHhhc
Confidence 123556677766432 24567789999999999999886
No 49
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.47 E-value=8.4e-13 Score=125.62 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=78.1
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
+|++++.+ ++++||++|... .++.|.+| ||++++|||+.+||+||++||||+++.... .++.+.+.... .+
T Consensus 2 ~v~~ii~~--~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~-~~ 72 (134)
T cd03675 2 TVAAVVER--DGRFLLVEEETD---GGLVFNQP-AGHLEPGESLIEAAVRETLEETGWHVEPTA--LLGIYQWTAPD-SD 72 (134)
T ss_pred eEEEEEEE--CCEEEEEEEccC---CCceEECC-CccCCCCCCHHHHHHHHHHHHHCcccccce--EEEEEEeecCC-CC
Confidence 35566655 689999998754 46899999 999999999999999999999999975433 33333332211 11
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
...+..+|.+....... ....++|+.++.|++++++.++..
T Consensus 73 ---~~~~~~~f~~~~~~~~~---~~~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 73 ---TTYLRFAFAAELLEHLP---DQPLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred ---eeEEEEEEEEEECCCCC---CCCCCCCceeeEEEeHHHHHhhhh
Confidence 12345567776644321 123446899999999999988753
No 50
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=6e-13 Score=123.63 Aligned_cols=107 Identities=26% Similarity=0.470 Sum_probs=77.6
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCc
Q 004012 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (779)
Q Consensus 40 v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~ 119 (779)
+.+++++ .++++||+||.. .|.|.+| ||++++|||+.+||+||++||||+.+....+..++.+........+
T Consensus 3 ~~~~v~~-~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~- 74 (118)
T cd04690 3 AAALILV-RDGRVLLVRKRG-----TDVFYLP-GGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPG- 74 (118)
T ss_pred EEEEEEe-cCCeEEEEEECC-----CCcEECC-CCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCC-
Confidence 4555666 467999998864 3789999 9999999999999999999999998654447777766543221111
Q ss_pred ccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 120 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 120 ~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
.+...++|.+.... . +. ..+|+.+++|++++++..
T Consensus 75 --~~~~~~~f~~~~~~--~---~~-~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 75 --VDVRATVYVAELTG--E---PV-PAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred --cEEEEEEEEEcccC--C---cC-CCchhhccEEecHHHccc
Confidence 24566777776533 1 22 347999999999999843
No 51
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=5.1e-13 Score=126.02 Aligned_cols=110 Identities=20% Similarity=0.315 Sum_probs=74.4
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
..+.++|++ .+++|||+||... ++|.|.+| ||+++.|||+.+||+||++||||+.+.. ...++.... . ..
T Consensus 3 ~~~~~~v~~-~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~-~--~~ 72 (127)
T cd04670 3 VGVGGLVLN-EKNEVLVVQERNK---TPNGWKLP-GGLVDPGEDIFDGAVREVLEETGIDTEF--VSVVGFRHA-H--PG 72 (127)
T ss_pred eEEEEEEEc-CCCeEEEEEccCC---CCCcEECC-CccCCCCCCHHHHHHHHHHHHHCCCcce--eEEEEEEec-C--CC
Confidence 457778887 4689999987653 68999999 9999999999999999999999998642 223322211 1 11
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
+ + ......|.+.+... . ..+.++++|+.+++|++++++.+
T Consensus 73 ~-~--~~~~~~~~~~~~~~-~-~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 73 A-F--GKSDLYFICRLKPL-S-FDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred C-c--CceeEEEEEEEccC-c-CcCCCChhhhheeEEEcHHHHhc
Confidence 1 1 11222233433221 1 12355678999999999999954
No 52
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=6.4e-13 Score=125.29 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=76.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
++++++++ .+++|||+||... .+++.|.+| ||+++.|||+.+||+||++||||+.+... ..++.... .
T Consensus 2 ~~~~vv~~-~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtG~~~~~~--~~~~~~~~-----~- 69 (123)
T cd04671 2 IVAAVILN-NQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGETIEEAVKREVKEETGLDCEPT--TLLSVEEQ-----G- 69 (123)
T ss_pred EEEEEEEc-CCCEEEEEEecCC--CCCCeEECc-eeecCCCCCHHHHHHHHHHHHHCCeeecc--eEEEEEcc-----C-
Confidence 57778887 4789999998753 358999999 99999999999999999999999997542 23322111 1
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~ 161 (779)
.+.+.++|.+...++.. .....++.|+.+++|++++++.
T Consensus 70 ---~~~~~~~f~a~~~~g~~-~~~~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 70 ---GSWFRFVFTGNITGGDL-KTEKEADSESLQARWYSNKDLP 108 (123)
T ss_pred ---CeEEEEEEEEEEeCCeE-ccCCCCCcceEEEEEECHHHCC
Confidence 13456777777654321 0011234688899999999993
No 53
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.46 E-value=6.7e-13 Score=125.43 Aligned_cols=113 Identities=27% Similarity=0.398 Sum_probs=77.7
Q ss_pred EEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeeccc
Q 004012 38 RTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (779)
Q Consensus 38 r~v~v~V~~~~~g--kVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~ 115 (779)
+++++++++..++ ++||.||+. |.|.+| ||++++|||+.+||+||++||||+.+.... .++.+......
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~ 73 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGEDDLEAALRETEEETGITAEQLF--IVLGFKETLNY 73 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCCHHHHHHHHHHHHHCCChhhhh--hhccceeEEEc
Confidence 4677777764332 689998874 799999 999999999999999999999999975432 22222111111
Q ss_pred CCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 116 ~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
... ..+..+++|.+...... .+.++ +|+.++.|++++++.+++.
T Consensus 74 ~~~--~~~~~~~~f~~~~~~~~---~~~~~-~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 74 QVR--GKLKTVTYFLAELRPDV---EVKLS-EEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred ccc--CcceEEEEEEEEeCCCC---ccccc-cceeeEEeecHHHHHHHcC
Confidence 100 12356677877764221 13444 7999999999999987654
No 54
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.45 E-value=1.5e-12 Score=123.78 Aligned_cols=103 Identities=23% Similarity=0.319 Sum_probs=71.6
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEE--EEEeecccCCCcccceEE
Q 004012 48 STQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF--TFLQQNVINDGKFINNEF 125 (779)
Q Consensus 48 ~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~--~~~~~~~~~~g~~~~~e~ 125 (779)
.+++|||.+|+.. ++|.|.+| ||++++|||+.+||+||++||||+++.. +.... ...+.. .+ .....
T Consensus 12 ~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~---~~--~~~~~ 80 (131)
T cd04695 12 KETKVLLLKRVKT---LGGFWCHV-AGGVEAGETAWQAALRELKEETGISLPE--LYNADYLEQFYEA---ND--NRILM 80 (131)
T ss_pred CCCEEEEEEecCC---CCCcEECC-cccccCCCCHHHHHHHHHHHHhCCCccc--cccccceeeEeec---CC--ceEEE
Confidence 4578999999864 68999998 9999999999999999999999998643 22111 111211 11 12234
Q ss_pred EEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 126 ADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 126 ~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
..+|.+...... ....++|+.+++|++++++.+++.
T Consensus 81 ~~~f~~~~~~~~----~~~~~~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 81 APVFVGFVPPHQ----EVVLNHEHTEYRWCSFAEALELAP 116 (131)
T ss_pred EEEEEEEecCCC----ccccCchhcccEecCHHHHHHhcC
Confidence 556766653321 122337999999999999987643
No 55
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=1.2e-12 Score=125.23 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=80.3
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCcc-CCCCeEEEEEEEeecccC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL-PKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v-~~~~l~~l~~~~~~~~~~ 116 (779)
|++++++++ .+++|||+||...+..+++.|.+| ||+++.||++.+||.||++||||+.+ ....+.....+.+.. .
T Consensus 1 ~~~~~~i~~-~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~--~ 76 (133)
T cd04685 1 RAARVVLLD-PDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTF--L 76 (133)
T ss_pred CeEEEEEEc-CCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEe--c
Confidence 578999998 578999999876544567899999 99999999999999999999999987 333322222222222 1
Q ss_pred CCcccceEEEEEEEEEEcCCCCCc-Ccc-CCccceeeEEEeCHHHHHhH
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLE-AFT-LQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~-~i~-~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
+. ..+...++|.+......... ... ....++.+++|++++++.+.
T Consensus 77 ~~--~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 77 GV--DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred Cc--cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 11 12334566767654321110 111 11245678999999999663
No 56
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.44 E-value=2.2e-12 Score=121.54 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=78.6
Q ss_pred EEEEEEEecC--CCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccC
Q 004012 39 TVNAWIFAES--TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 39 ~v~v~V~~~~--~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~ 116 (779)
++++++++.. .++|||.+|... |.|.+| ||+++.|||+.+||+||++||||+.+... +..++++.+.....
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~~~~aa~RE~~EEtG~~~~~~-~~~l~~~~~~~~~~ 74 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDESPAEAAAREAWEEAGVRGKIG-KRPLGRFEYRKRSK 74 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCCHHHHHHHHHHHHhCCccccc-ceEEEEEEeeecCC
Confidence 4566666533 357999887642 899999 99999999999999999999999986432 25667665543211
Q ss_pred CCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
+ ...+..+++|.+....... .....|+.+++|++++++.+++.
T Consensus 75 ~--~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 75 N--RPPRCEVAVFPLEVTEELD----EWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred C--CCceEEEEEEEEEEecccc----CCcccCceEEEEecHHHHHHhcC
Confidence 1 1123455666666543211 22335778999999999988765
No 57
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1.1e-12 Score=122.93 Aligned_cols=111 Identities=21% Similarity=0.346 Sum_probs=76.7
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEE---eeccc
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL---QQNVI 115 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~---~~~~~ 115 (779)
++.++|++ .++++||+||+.. |.|++| ||+++.|||+.+||+||++||||+.+.. ...++.+. +....
T Consensus 4 ~v~~ii~~-~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~~~~aa~REl~EE~Gl~~~~--~~~~~~~~~~~~~~~~ 74 (129)
T cd04676 4 GVTAVVRD-DEGRVLLIRRSDN-----GLWALP-GGAVEPGESPADTAVREVREETGLDVEV--TGLVGIYTGPVHVVTY 74 (129)
T ss_pred eEEEEEEC-CCCeEEEEEecCC-----CcEECC-eeccCCCCCHHHHHHHHHHHHhCceeEe--eEEEEEeecccceeec
Confidence 56777777 4689999999763 899999 9999999999999999999999998643 23322221 11111
Q ss_pred CCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 116 ~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
+.+. ..+.+..+|.+...... .....+|..+++|++++++.++
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 75 PNGD-VRQYLDITFRCRVVGGE----LRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred CCCC-cEEEEEEEEEEEeeCCe----ecCCCCceeEEEEEChhhCccc
Confidence 2221 12445566666554321 2245578899999999999664
No 58
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=2e-12 Score=121.44 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=75.1
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
.|.++|++ +++|||++|.. .|.|.+| ||++++|||+.+||+||++||||+.+...+ .++.+........
T Consensus 4 ~v~~~i~~--~~~vLL~~~~~-----~~~w~~P-GG~ve~gEs~~~aa~REl~EEtG~~~~~~~--~~~~~~~~~~~~~- 72 (123)
T cd04672 4 DVRAAIFK--DGKILLVREKS-----DGLWSLP-GGWADVGLSPAENVVKEVKEETGLDVKVRK--LAAVDDRNKHHPP- 72 (123)
T ss_pred eEEEEEEE--CCEEEEEEEcC-----CCcEeCC-ccccCCCCCHHHHHHHHHHHHhCCeeeEeE--EEEEeccccccCC-
Confidence 57788888 48999998864 4899999 999999999999999999999999863322 2222221111111
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
....+.+..+|.+..... .+..+ +|+.+++|++++++.++
T Consensus 73 ~~~~~~~~~~f~~~~~~~----~~~~~-~E~~~~~W~~~~el~~l 112 (123)
T cd04672 73 PQPYQVYKLFFLCEILGG----EFKPN-IETSEVGFFALDDLPPL 112 (123)
T ss_pred CCceEEEEEEEEEEecCC----cccCC-CceeeeEEECHHHCccc
Confidence 112344555666665332 12344 78999999999999654
No 59
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.42 E-value=1.4e-12 Score=126.62 Aligned_cols=111 Identities=20% Similarity=0.332 Sum_probs=74.7
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
++++++++.++++|||+||.. ++.|++| ||++++|||+.+||+||++||||+.+.. +.....+. ....
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs~~~AA~REl~EETGl~v~~--~~~~~~~~--~~~~-- 70 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDEDDHDCAIREVYEETGFDISK--YIDKDDYI--ELII-- 70 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcCHHHHHHHHHHHhhCcccee--ccccceee--eccc--
Confidence 577888884447999998853 3589999 9999999999999999999999998642 11111111 1100
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccC-CccceeeEEEeCHHHHHhHHhc
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLAK 166 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~-~~~Ev~e~~Wv~~eEl~~~l~~ 166 (779)
.. ..+++|++....... ...+ ..+|+.+++|++++++.+++..
T Consensus 71 --~~-~~~~~f~~~~~~~~~--~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 71 --RG-QNVKLYIVPGVPEDT--PFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred --CC-cEEEEEEEecCCCCc--ccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 11 234555554322111 1123 3479999999999999998764
No 60
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.42 E-value=1.3e-12 Score=126.74 Aligned_cols=114 Identities=21% Similarity=0.331 Sum_probs=81.5
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeeccc
Q 004012 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (779)
Q Consensus 36 ~hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~ 115 (779)
...+|.+++.. +++|||+||... .+.|.|.+| ||+++.|||+.+||.||++||||+++. .+..+..+....+.
T Consensus 9 p~~~v~~~i~~--~~~iLLvrR~~~--p~~g~WalP-GG~ve~GEt~eeaa~REl~EETgL~~~--~~~~~~v~~~~~rd 81 (145)
T COG1051 9 PLVAVGALIVR--NGRILLVRRANE--PGAGYWALP-GGFVEIGETLEEAARRELKEETGLRVR--VLELLAVFDDPGRD 81 (145)
T ss_pred cceeeeEEEEe--CCEEEEEEecCC--CCCCcEeCC-CccCCCCCCHHHHHHHHHHHHhCCccc--ceeEEEEecCCCCC
Confidence 34567777776 469999999875 457999999 999999999999999999999999954 35555555443222
Q ss_pred CCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 116 ~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
+ +.+.++.+|++....+.. .....++...+.|++++++...
T Consensus 82 ~----r~~~v~~~~~~~~~~g~~---~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 82 P----RGHHVSFLFFAAEPEGEL---LAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred C----ceeEEEEEEEEEecCCCc---ccCChhhHhhcceecHhHcccc
Confidence 1 235566666665532211 1223358889999999999653
No 61
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.41 E-value=2.9e-12 Score=121.95 Aligned_cols=106 Identities=25% Similarity=0.405 Sum_probs=72.3
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCc
Q 004012 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (779)
Q Consensus 40 v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~ 119 (779)
+.+++ + .+++|||+||+.. ..++|+|.+| ||++++|||+.+|++||+.||||+.+.... .++.+.+.. +.
T Consensus 7 ~~~ii-~-~~~~vLL~~R~~~-~~~~g~w~~P-gG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~--~~~~~~~~~--~~-- 76 (135)
T PRK10546 7 VAAII-E-RDGKILLAQRPAH-SDQAGLWEFA-GGKVEPGESQPQALIRELREELGIEATVGE--YVASHQREV--SG-- 76 (135)
T ss_pred EEEEE-e-cCCEEEEEEccCC-CCCCCcEECC-cccCCCCCCHHHHHHHHHHHHHCCccccce--eEEEEEEec--CC--
Confidence 34434 4 3689999999764 4588999999 999999999999999999999999975432 333333221 11
Q ss_pred ccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 120 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 120 ~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.....++|.+..... .+...|..+++|++++++.++
T Consensus 77 --~~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 77 --RRIHLHAWHVPDFHG------ELQAHEHQALVWCTPEEALRY 112 (135)
T ss_pred --cEEEEEEEEEEEecC------cccccccceeEEcCHHHcccC
Confidence 122345555544222 122346788999999999654
No 62
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.39 E-value=9.3e-12 Score=116.85 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=72.1
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCc
Q 004012 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (779)
Q Consensus 40 v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~ 119 (779)
+.++|.+ .+|++||+||+.. ..++|+|++| ||++++||++.+||.||++||||+++.. ...++.+.+.. ++
T Consensus 7 ~~~ii~~-~~~~vll~rR~~~-~~~~g~w~~P-gG~~~~gE~~~~a~~Re~~EE~gl~~~~--~~~~~~~~~~~--~~-- 77 (129)
T PRK10776 7 AVGIIRN-PNNEIFITRRAAD-AHMAGKWEFP-GGKIEAGETPEQALIRELQEEVGITVQH--ATLFEKLEYEF--PD-- 77 (129)
T ss_pred EEEEEEC-CCCEEEEEEecCC-CCCCCeEECC-ceecCCCCCHHHHHHHHHHHHHCCceec--ceEEEEEEeeC--CC--
Confidence 3344445 4679999999865 4689999999 9999999999999999999999998543 33344433321 11
Q ss_pred ccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 120 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 120 ~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
......+|.+..... .+.+.|..+++|++++++..
T Consensus 78 --~~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~~l~~ 112 (129)
T PRK10776 78 --RHITLWFWLVESWEG------EPWGKEGQPGRWVSQVALNA 112 (129)
T ss_pred --cEEEEEEEEEEEECC------ccCCccCCccEEecHHHCcc
Confidence 112234454443222 12235778899999999964
No 63
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=3.1e-12 Score=120.05 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=71.9
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCc
Q 004012 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (779)
Q Consensus 40 v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~ 119 (779)
+.++|++ .+++|||++|... ..+.|.+| ||+++.|||+.+||+||++||||+.+.... .++.+.+ ++
T Consensus 3 ~~~ii~~-~~~~vLL~~r~~~---~~~~w~lP-GG~ve~gEs~~~a~~REl~EEtGl~~~~~~--~~~~~~~----~~-- 69 (121)
T cd04669 3 ASIVIIN-DQGEILLIRRIKP---GKTYYVFP-GGGIEEGETPEEAAKREALEELGLDVRVEE--IFLIVNQ----NG-- 69 (121)
T ss_pred eEEEEEe-CCCEEEEEEEecC---CCCcEECC-ceeccCCCCHHHHHHHHHHHhhCeeEeeee--EEEEEee----CC--
Confidence 4556666 3589999998653 24899999 999999999999999999999999974322 2222222 11
Q ss_pred ccceEEEEEEEEEEcCCCCC----cCc-cCCccceeeEEEeCHHHHHhH
Q 004012 120 FINNEFADVYLVTTLNPIPL----EAF-TLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 120 ~~~~e~~~vf~~~~~~~~~~----~~i-~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
...++|.+........ ... ..++++..++.|++++++.++
T Consensus 70 ----~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 70 ----RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred ----cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 2346677766443210 000 112345678999999999764
No 64
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=4.9e-12 Score=116.81 Aligned_cols=93 Identities=22% Similarity=0.425 Sum_probs=69.5
Q ss_pred CCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCcccceEEEEE
Q 004012 49 TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADV 128 (779)
Q Consensus 49 ~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~~~v 128 (779)
+++|||++|.. |.|.+| ||++++|||+.+||.||++||||+.+. .+..++.+.. .+...++
T Consensus 10 ~~~vLlv~r~~------~~w~~P-gG~ve~gE~~~~aa~REl~EEtGl~~~--~~~~~~~~~~----------~~~~~~~ 70 (112)
T cd04667 10 GGRVLLVRKSG------SRWALP-GGKIEPGETPLQAARRELQEETGLQGL--DLLYLFHVDG----------GSTRHHV 70 (112)
T ss_pred CCEEEEEEcCC------CcEeCC-CCcCCCCCCHHHHHHHHHHHHhCCccc--ceEEEEEEeC----------CCEEEEE
Confidence 68999999863 899999 999999999999999999999999853 4555544321 1234566
Q ss_pred EEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004012 129 YLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (779)
Q Consensus 129 f~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l 164 (779)
|.+.+.... ....++|+.+++|++++++.++.
T Consensus 71 f~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~~ 102 (112)
T cd04667 71 FVASVPPSA----QPKPSNEIADCRWLSLDALGDLN 102 (112)
T ss_pred EEEEcCCcC----CCCCchheeEEEEecHHHhhhcc
Confidence 776654321 23345799999999999997653
No 65
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.38 E-value=4.6e-12 Score=117.55 Aligned_cols=106 Identities=26% Similarity=0.413 Sum_probs=77.1
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCc
Q 004012 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (779)
Q Consensus 40 v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~ 119 (779)
+.+++++ +++++||++|+..+ .++|+|++| ||+++.||++.+||.||+.||||+.+.. ...++.+.+.. +.
T Consensus 4 ~~~~i~~-~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~~~~~a~Re~~EE~g~~~~~--~~~~~~~~~~~--~~-- 74 (124)
T cd03425 4 VAAIIID-DDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGETPEQALVRELREELGIEVEV--GELLATVEHDY--PD-- 74 (124)
T ss_pred EEEEEEC-CCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCCHHHHHHHHHHHhhCcEEec--cceEEEEEeeC--CC--
Confidence 4445556 45899999998765 789999999 9999999999999999999999998643 34445444322 11
Q ss_pred ccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 120 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 120 ~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
.+...++|.+..... ...+.|..++.|++++++.+
T Consensus 75 --~~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~el~~ 109 (124)
T cd03425 75 --KRVTLHVFLVELWSG------EPQLLEHQELRWVPPEELDD 109 (124)
T ss_pred --CeEEEEEEEEeeeCC------CcccccCceEEEeeHHHccc
Confidence 234566676655322 12245788999999999965
No 66
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.38 E-value=4.3e-12 Score=120.52 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=74.4
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
++++++++ +++|||++|... ..+|.|++| ||+++.|||+.+|++||++||||+++.. ...++.+.. +.
T Consensus 15 ~v~~ii~~--~~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~~~~a~~REl~EEtGl~~~~--~~~~~~~~~----~~- 82 (130)
T cd04511 15 IVGCVPEW--EGKVLLCRRAIE--PRHGFWTLP-AGFMENGETTEQGALRETWEEAGARVEI--DGLYAVYSV----PH- 82 (130)
T ss_pred EEEEEEec--CCEEEEEEecCC--CCCCeEECC-cccccCCCCHHHHHHHHHHHHhCCEEEe--eeEEEEEec----CC-
Confidence 45666666 589999999764 357999999 9999999999999999999999998643 223333321 11
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~ 161 (779)
.+...++|.+...... +. ...|..+.+|++++++.
T Consensus 83 ---~~~~~~~f~~~~~~~~----~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 83 ---ISQVYMFYRARLLDLD----FA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred ---ceEEEEEEEEEEcCCc----cc-CCcchhceEEECHHHCC
Confidence 2345677777764431 22 33578899999999994
No 67
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.37 E-value=6.8e-12 Score=138.27 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=81.7
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccC
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~ 116 (779)
+.++.++|++ +|+|||++|... .++|.|.+| ||++++|||+.+||+||++||||+++....+............+
T Consensus 203 ~vtv~avv~~--~g~VLLvrR~~~--p~~g~W~lP-GG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p 277 (340)
T PRK05379 203 FVTVDAVVVQ--SGHVLLVRRRAE--PGKGLWALP-GGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHP 277 (340)
T ss_pred ceEEEEEEEE--CCEEEEEEecCC--CCCCeEECC-cccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCC
Confidence 4677777776 689999999764 347999999 99999999999999999999999987544332221111111112
Q ss_pred CCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
+.....+.+.++|.+.+..... ..+ ...+|+.+++|++++++...
T Consensus 278 ~r~~~~~~i~~~f~~~~~~~~~-~~~-~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 278 GRSLRGRTITHAFLFEFPAGEL-PRV-KGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCcEEEEEEEEEecCCcc-Ccc-CCCCceeeEEEEEHHHhhhh
Confidence 2112235677788777643211 112 23478999999999999653
No 68
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.37 E-value=3.6e-12 Score=134.87 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=85.0
Q ss_pred ccccccCCceeE-----EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCC
Q 004012 27 RSEVHRVGDYHR-----TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKD 101 (779)
Q Consensus 27 R~~~h~~g~~hr-----~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~ 101 (779)
+..|..+|..|. +|.++|.+ +++|||+||...+ +|.|.+| ||++++|||+++||+||++||||+++.
T Consensus 117 ~~~C~~c~~~~yp~~~paViv~V~~--~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs~eeAa~REv~EEtGl~v~-- 188 (256)
T PRK00241 117 AMLCPHCRERYYPRIAPCIIVAVRR--GDEILLARHPRHR---NGVYTVL-AGFVEVGETLEQCVAREVMEESGIKVK-- 188 (256)
T ss_pred eEECCCCCCEECCCCCCEEEEEEEe--CCEEEEEEccCCC---CCcEeCc-ccCCCCCCCHHHHhhhhhhhccCceee--
Confidence 456677776542 34444444 6899999886532 6999999 999999999999999999999999864
Q ss_pred CeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 102 AFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 102 ~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
.+.+++...+. + .+.....|.+....+ .+.++++|+.+++|++++|+..
T Consensus 189 ~~~~~~s~~~~--~------p~~lm~~f~a~~~~~----~~~~~~~Ei~~a~W~~~del~~ 237 (256)
T PRK00241 189 NLRYVGSQPWP--F------PHSLMLGFHADYDSG----EIVFDPKEIADAQWFRYDELPL 237 (256)
T ss_pred eeEEEEeEeec--C------CCeEEEEEEEEecCC----cccCCcccEEEEEEECHHHCcc
Confidence 46666654332 1 123566777776432 2466778999999999999854
No 69
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.37 E-value=9.6e-12 Score=118.43 Aligned_cols=113 Identities=23% Similarity=0.224 Sum_probs=73.8
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEE--eecccC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL--QQNVIN 116 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~--~~~~~~ 116 (779)
+|.++|++ +++|||++|.. .+.|.+| ||++++|||+.+||+||++||||+.+.. ....++.+. +.....
T Consensus 2 ~~~~ii~~--~~~vLLv~~~~-----~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl~~~~-~~~~l~~~~~~~~~~~~ 72 (131)
T cd04686 2 AVRAIILQ--GDKILLLYTKR-----YGDYKFP-GGGVEKGEDHIEGLIRELQEETGATNIR-VIEKFGTYTERRPWRKP 72 (131)
T ss_pred cEEEEEEE--CCEEEEEEEcC-----CCcEECc-cccCCCCCCHHHHHHHHHHHHHCCcccc-cceEEEEEEeeccccCC
Confidence 56777777 58999998864 2689999 9999999999999999999999998521 123333332 111111
Q ss_pred CCcccceEEEEEEEEEEcCCCCCcCccCCccce---eeEEEeCHHHHHhH
Q 004012 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEV---SAVKYIAYEEYKNL 163 (779)
Q Consensus 117 ~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev---~e~~Wv~~eEl~~~ 163 (779)
++ ...+.+.++|.+.+..... .....+.|. ..+.|+|++++.+.
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 73 DA-DIFHMISYYYLCEVDAELG--AQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred CC-ceeEEEEEEEEEEEcCCcC--CcccchhhHhcCCCcEEecHHHHHHh
Confidence 11 1223456777777643321 123333333 35899999999764
No 70
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.35 E-value=1.4e-11 Score=124.90 Aligned_cols=113 Identities=23% Similarity=0.208 Sum_probs=81.3
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCC-CCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAG-DSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 40 v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~G-Et~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
|.+.+.+..++.||++||+...+.++|.|++| ||++|+| |++.+||+||++||||+.. ..+..++.+...... .+
T Consensus 34 vvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~~~~tA~REl~EEtGl~~--~~~~~lg~l~~~~~~-~~ 109 (190)
T PRK10707 34 VLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDASLIATALREAQEEVAIPP--SAVEVIGVLPPVDSS-TG 109 (190)
T ss_pred EEEEEEECCCCEEEEEEeCCcccCCCCcEEcC-CcccCCCcccHHHHHHHHHHHHHCCCc--cceEEEEEeeeeecc-CC
Confidence 33334433346899999998777789999999 9999986 5799999999999999985 457777776532211 11
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l 164 (779)
..++.|.+.+..+.. ..++++|+.++.|+|++++.++.
T Consensus 110 -----~~~~~~v~~~~~~~~---~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 110 -----YQVTPVVGIIPPDLP---YRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred -----cEEEEEEEEECCCCC---CCCChhhhheEEEEeHHHHhCcc
Confidence 234445454433322 46677899999999999997753
No 71
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.35 E-value=5.2e-12 Score=120.55 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=71.5
Q ss_pred CCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeE--EEEEEEeecccCCCcc---cce
Q 004012 49 TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFE--FVFTFLQQNVINDGKF---INN 123 (779)
Q Consensus 49 ~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~--~l~~~~~~~~~~~g~~---~~~ 123 (779)
++++||+||+.. ..|.|.+| ||++++|||+.+||+||++||||+.+....+. .++.+.+.. +++.. ..+
T Consensus 12 ~~~~Llvk~~~~---~~g~W~fP-gG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~--~~~~~~~~~~~ 85 (132)
T cd04661 12 DTLVLLVQQKVG---SQNHWILP-QGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKY--PKAVRNEGIVG 85 (132)
T ss_pred CcEEEEEEeecC---CCCeeECC-cccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEec--CcccccccCcc
Confidence 568999998753 25899999 99999999999999999999999986431110 111222211 11100 112
Q ss_pred EEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 124 EFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 124 e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
..+++|.+...++. +.+ .+|+.++.|++++++.+++.
T Consensus 86 ~~~~~f~~~~~~g~----~~~-~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 86 AKVFFFKARYMSGQ----FEL-SQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred cEEEEEEEEEecCc----ccc-CCCcceeEecCHHHHHhhcC
Confidence 35677777765542 232 37899999999999987653
No 72
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.35 E-value=1.2e-11 Score=113.73 Aligned_cols=111 Identities=25% Similarity=0.424 Sum_probs=81.2
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
++++++++ .++++||++|+.. ++|+|.+| ||+++.||++.+||+||+.||+|+.+.. ......+.+.... .
T Consensus 2 ~~~~i~~~-~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~~~~~a~RE~~EE~Gl~~~~--~~~~~~~~~~~~~-~- 72 (123)
T cd02883 2 AVGAVILD-EDGRVLLVRRADS---PGGLWELP-GGGVEPGETLEEAAIREVREETGLDVDV--LRLLGVYEVESPD-E- 72 (123)
T ss_pred ceEEEEEC-CCCCEEEEEEcCC---CCCeEeCC-cccccCCCCHHHHHHHHHHHhhCcccee--eeEEEEEEeeccC-C-
Confidence 56777877 3589999999875 78999999 9999999999999999999999998642 2333334333221 1
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.......+|.+....+.. ...++.|+.+++|++++++.+.
T Consensus 73 --~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 73 --GEHAVVFVFLARLVGGEP---TLLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred --CceEEEEEEEEEeCCCCc---CCCCCCccceEEEEcHHHCccc
Confidence 234567778777654321 1245578899999999999763
No 73
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=1.9e-11 Score=114.99 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=72.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
.+.+++++ .++++||+||... ..+.|.|++| ||+++.|||+.+|++||+.||||+.+... ..++.+.+.. +.
T Consensus 6 ~~~~ii~~-~~~~vLl~~R~~~-~~~~g~w~~P-gg~ve~ge~~~~~~~RE~~EE~g~~~~~~--~~~~~~~h~~--~~- 77 (128)
T TIGR00586 6 IAVGIIRN-ENGEIIITRRADG-HMFAKLLEFP-GGKEEGGETPEQAVVRELEEEIGIPQHFS--EFEKLEYEFY--PR- 77 (128)
T ss_pred EEEEEEEC-CCCEEEEEEEeCC-CCCCCeEECC-CcccCCCCCHHHHHHHHHHHHHCCcceee--eEEEEEEEEC--CC-
Confidence 34444445 4679999999765 5688999999 99999999999999999999999986432 2233332221 11
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.+...++|.+...+.. +.+.+..++.|++++++.+.
T Consensus 78 ---~~~~~~~~~~~~~~~~------~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 78 ---HITLWFWLLERWEGGP------PGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred ---cEEEEEEEEEEEcCCC------cCcccccccEEeCHHHCCcc
Confidence 1234455555543221 12345678899999999653
No 74
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.29 E-value=2.9e-11 Score=122.07 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=85.2
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCC----CCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecc
Q 004012 39 TVNAWIFAESTQELLLQRRADFKD----SWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV 114 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~----~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~ 114 (779)
+|.+++++..+++|||+++-.... ..+..|++| ||++++||++.+||+||++||||+.+. .+..++.+..
T Consensus 46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~~~~aA~REl~EEtG~~~~--~~~~~~~~~~--- 119 (185)
T TIGR00052 46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGESPEDVARREAIEEAGYQVK--NLRKLLSFYS--- 119 (185)
T ss_pred eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCCHHHHHHHHccccccceec--ceEEEEEEEc---
Confidence 577777764457899987543211 146899999 999999999999999999999999963 5666665532
Q ss_pred cCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004012 115 INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (779)
Q Consensus 115 ~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~ 167 (779)
..| ...+..++|.+..........-...++|..+..|+|++++.+++.++
T Consensus 120 -~~g--~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 120 -SPG--GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred -CCC--CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 122 24567889999865432111112234556678999999999998864
No 75
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.29 E-value=6e-11 Score=119.84 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=83.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
+|.++.++ .+++|||+|+... ...++.|++| ||++++||++.+||+||++||||+.+ ..+..++.+... .+
T Consensus 49 ~v~v~~~~-~~~~vlLvrq~r~-~~~~~~~elP-aG~ve~gE~~~~aA~REl~EEtG~~~--~~l~~l~~~~~~----~~ 119 (185)
T PRK11762 49 AVMIVPIL-DDDTLLLIREYAA-GTERYELGFP-KGLIDPGETPLEAANRELKEEVGFGA--RQLTFLKELSLA----PS 119 (185)
T ss_pred EEEEEEEe-CCCEEEEEEeecC-CCCCcEEEcc-ceeCCCCCCHHHHHHHHHHHHHCCCC--cceEEEEEEecC----CC
Confidence 46666566 4678999887533 3567889999 99999999999999999999999986 457777766432 12
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~ 167 (779)
.....+++|++...... ....++.|..++.|+|++++.+++.++
T Consensus 120 --~~~~~~~~f~a~~~~~~---~~~~~e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 120 --YFSSKMNIVLAEDLYPE---RLEGDEPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred --ccCcEEEEEEEEccccc---cCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence 12346777877643221 123455677789999999999998864
No 76
>PLN02709 nudix hydrolase
Probab=99.29 E-value=3.4e-11 Score=123.67 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=85.1
Q ss_pred CceeEEEEEEEEec-----CCCEEEEEEeCCCCCCCCCCeeccccccCCCCC-CHHHHHHHHHHHHhCCccCCCCeEEEE
Q 004012 34 GDYHRTVNAWIFAE-----STQELLLQRRADFKDSWPGMWDISSAGHISAGD-SSLISAQRELQEELGINLPKDAFEFVF 107 (779)
Q Consensus 34 g~~hr~v~v~V~~~-----~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GE-t~~eAAlREl~EEtGl~v~~~~l~~l~ 107 (779)
+..+.+|.+.++.. .+.+|||.+|+.....+||.|+|| ||++|+|| ++.+||+||+.||+||+.. .+..++
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~~~~tAlRE~~EEiGl~~~--~v~vlg 106 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKDDIATALREAREEIGLDPS--LVTIIS 106 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCCHHHHHHHHHHHHHCCCch--heEEee
Confidence 34566777777752 123799999998877899999999 99999985 7899999999999999853 456666
Q ss_pred EEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 108 TFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 108 ~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
....... ..| ..+..|.+.+..... ..+.++++||+++.|+|++++.+
T Consensus 107 ~L~~~~t-~sg-----~~V~P~V~~~~~~~~-~~~~~np~EV~~vf~vPL~~ll~ 154 (222)
T PLN02709 107 VLEPFVN-KKG-----MSVAPVIGFLHDKKA-FKPLPNPAEVEEIFDVPLEMFLK 154 (222)
T ss_pred ecCCeEC-CCC-----CEEEEEEEEecCCCC-ccccCChhhhheeEEecHHHHhC
Confidence 5533211 111 245556555533211 12457889999999999999965
No 77
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.23 E-value=9.2e-11 Score=110.50 Aligned_cols=60 Identities=25% Similarity=0.458 Sum_probs=46.9
Q ss_pred EEEEEEEecCC--CEEEEEEeCCC--CCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccC
Q 004012 39 TVNAWIFAEST--QELLLQRRADF--KDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLP 99 (779)
Q Consensus 39 ~v~v~V~~~~~--gkVLL~rRs~~--k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~ 99 (779)
++++++++..+ .+|||++|... ....+|.|++| ||+++.||++.+||+||++||||+.+.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 45666665333 36999987432 22456899999 999999999999999999999999865
No 78
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.23 E-value=2.6e-10 Score=111.56 Aligned_cols=125 Identities=15% Similarity=0.175 Sum_probs=90.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
.|.++... ++++||+++.. ..|++| ||++++|||+.+||+||++||||+.+ ..+..++.+... .+
T Consensus 26 ~V~ii~~~--~~~~LL~~~~~------~~~elP-gG~vE~gEt~~eaA~REl~EETG~~~--~~~~~lg~~~~~----~~ 90 (156)
T TIGR02705 26 HVLVIPRY--KDQWLLTEHKR------RGLEFP-GGKVEPGETSKEAAIREVMEETGAIV--KELHYIGQYEVE----GE 90 (156)
T ss_pred EEEEEEEE--CCEEEEEEEcC------CcEECC-ceecCCCCCHHHHHHHHHHHHhCcEe--eeeEEEEEEEec----CC
Confidence 34444444 46888887653 359999 99999999999999999999999985 457788876542 22
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEE-EeCHHHHHhHHhcCCCCcccCCCCcchHHHHHHHH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVK-YIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNIIS 188 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~-Wv~~eEl~~~l~~~~~~f~p~~~~~~~~~~f~~l~ 188 (779)
......++|.+..... ... +|..+.. +++++++.+.+..++ .|+..+.|.....+++.+.
T Consensus 91 --~~~~~~~vf~A~~~~~------~~~-~e~~E~~~~~~~~~~~~~~~~g~-~~s~~~~d~~~~~~~~~~~ 151 (156)
T TIGR02705 91 --STDFVKDVYFAEVSAL------ESK-DDYLETKGPVLLQEIPDIIKADP-RFSFIMKDDVLLKCLERAK 151 (156)
T ss_pred --CcEEEEEEEEEEEecc------ccC-CCceeeEeEEEHHHHHHHHhcCC-cccEEEchHHHHHHHHHHH
Confidence 1456788998887532 222 4555555 799999999887654 7888888777666666653
No 79
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.19 E-value=4.9e-10 Score=114.69 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=83.0
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCC----CCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecc
Q 004012 39 TVNAWIFAESTQELLLQRRADFKD----SWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV 114 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~----~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~ 114 (779)
+|.++.+++.+++|+|++.-.... ..+-.|++| +|.+++||++.+||+||+.||||+.+ ..+..++.+...
T Consensus 51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~p~~aA~REL~EETGy~a--~~~~~l~~~~~s-- 125 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGESVEDVARREAIEEAGLIV--GRTKPVLSYLAS-- 125 (202)
T ss_pred eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCCHHHHHHHHHHHHhCcee--eEEEEEEEEEcC--
Confidence 566777774457888875432211 023579999 99999999999999999999999985 346666655331
Q ss_pred cCCCcccceEEEEEEEEEEcCCCC-CcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004012 115 INDGKFINNEFADVYLVTTLNPIP-LEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (779)
Q Consensus 115 ~~~g~~~~~e~~~vf~~~~~~~~~-~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~ 167 (779)
.| ...+..++|.+....... ......+++|.-++.|+|++++.+++.++
T Consensus 126 --pg--~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 126 --PG--GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred --CC--cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 22 245678899887532111 01123455677789999999999999864
No 80
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.14 E-value=1.5e-09 Score=110.24 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=87.6
Q ss_pred cccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCC------CCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccC
Q 004012 26 PRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDS------WPGMWDISSAGHISAGDSSLISAQRELQEELGINLP 99 (779)
Q Consensus 26 ~R~~~h~~g~~hr~v~v~V~~~~~gkVLL~rRs~~k~~------~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~ 99 (779)
.|..++..+ +|.++++++.+++|+|+|.-.. .. .+-.|++| +|.++.| +|.+||+||++||||..+
T Consensus 38 ~r~vv~~~~----~v~Vl~~~~~~~~vvLvrQyR~-~v~~~~~~~~~~lElP-AG~vd~~-~p~~aA~REL~EETGy~a- 109 (191)
T PRK15009 38 KREVYDRGN----GATILLYNAKKKTVVLIRQFRV-ATWVNGNESGQLIETC-AGLLDND-EPEVCIRKEAIEETGYEV- 109 (191)
T ss_pred EEEEEEECC----EEEEEEEECCCCEEEEEEcccc-cccccCCCCceEEEEe-ccccCCC-CHHHHHHHHHHHhhCCcc-
Confidence 345454433 6777777754678888865433 22 34579999 9999976 699999999999999986
Q ss_pred CCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004012 100 KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (779)
Q Consensus 100 ~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~~~ 167 (779)
..+..++.+.. +.| ...+..++|.+.............+++|.-++.|+|++++.+++.++
T Consensus 110 -~~~~~l~~~~~----spG--~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 110 -GEVRKLFELYM----SPG--GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred -ceEEEeeEEEc----CCc--ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 45777776532 223 34568899999863221111112345788889999999999998864
No 81
>PRK08999 hypothetical protein; Provisional
Probab=99.13 E-value=3.9e-10 Score=122.98 Aligned_cols=107 Identities=25% Similarity=0.344 Sum_probs=74.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
.+.++|++ .++++||+||... ..++|+|++| ||+++.||++.+|+.||++||||+.+.. ...+.+..+. ++..
T Consensus 7 ~~~~vi~~-~~~~vLL~kR~~~-~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~Gl~~~~--~~~l~~~~h~--~~~~ 79 (312)
T PRK08999 7 VAAGVIRD-ADGRILLARRPEG-KHQGGLWEFP-GGKVEPGETVEQALARELQEELGIEVTA--ARPLITVRHD--YPDK 79 (312)
T ss_pred EEEEEEEC-CCCeEEEEEecCC-CCCCCeEECC-ccCCCCCCCHHHHHHHHHHHHhCCceec--ceeEEEEEEE--cCCC
Confidence 44445555 4689999999765 5689999999 9999999999999999999999998643 2333333322 1221
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
....++|.+..... .+...|..+++|++++++.+
T Consensus 80 ----~~~i~~y~~~~~~~------~~~~~e~~~~~Wv~~~el~~ 113 (312)
T PRK08999 80 ----RVRLDVRRVTAWQG------EPHGREGQPLAWVAPDELAV 113 (312)
T ss_pred ----eEEEEEEEEEEecC------cccCccCCccEEecHHHccc
Confidence 23456666554322 22345778899999999865
No 82
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.11 E-value=7.9e-10 Score=103.59 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=74.3
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
+|.++++. ++++||+++.. +.|.+| ||++++||++.+||+||++||||+.+ ..+..++.+..... +
T Consensus 2 ~v~vi~~~--~~~vLl~~~~~------~~w~lP-gG~ve~gE~~~~aa~REl~EE~G~~~--~~~~~l~~~~~~~~---~ 67 (118)
T cd04665 2 SVLVICFY--DDGLLLVRHKD------RGWEFP-GGHVEPGETIEEAARREVWEETGAEL--GSLTLVGYYQVDLF---E 67 (118)
T ss_pred EEEEEEEE--CCEEEEEEeCC------CEEECC-ccccCCCCCHHHHHHHHHHHHHCCcc--CceEEEEEEEecCC---C
Confidence 34555565 58899988752 579999 99999999999999999999999996 45777777655321 1
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEY 160 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl 160 (779)
......+|.+....... .....|+....|++....
T Consensus 68 ---~~~~~~~y~a~~~~~~~----~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 68 ---SGFETLVYPAVSAQLEE----KASYLETDGPVLFKNEPE 102 (118)
T ss_pred ---CcEEEEEEEEEEEeccc----ccccccccCcEEeccCCc
Confidence 23456778887654322 223479999999987655
No 83
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.03 E-value=3e-10 Score=119.06 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=86.8
Q ss_pred ccccccCCcee-----EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCC
Q 004012 27 RSEVHRVGDYH-----RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKD 101 (779)
Q Consensus 27 R~~~h~~g~~h-----r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~ 101 (779)
+..|..+|..| .+|-+.+.+ ++++||.++.. +++|+++.- +|.||+|||+++|+.||++||+||.+.
T Consensus 129 ~~~C~~cg~~~fPR~dP~vIv~v~~--~~~ilLa~~~~---h~~g~yS~L-AGFVE~GETlE~AV~REv~EE~Gi~V~-- 200 (279)
T COG2816 129 ARVCPKCGHEHFPRIDPCVIVAVIR--GDEILLARHPR---HFPGMYSLL-AGFVEPGETLEQAVAREVFEEVGIKVK-- 200 (279)
T ss_pred eeeCCCCCCccCCCCCCeEEEEEec--CCceeecCCCC---CCCcceeee-eecccCCccHHHHHHHHHHHhhCeEEe--
Confidence 44556666544 345555555 55688887765 458999996 999999999999999999999999974
Q ss_pred CeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004012 102 AFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 102 ~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
+++++++.... ++. .+..-|.+...++ ++++++.|+++.+|++.+|+...+.
T Consensus 201 ~vrY~~SQPWP--fP~------SLMigf~aey~sg----eI~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 201 NVRYVGSQPWP--FPH------SLMLGFMAEYDSG----EITPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred eeeEEeccCCC--Cch------hhhhhheeeeccc----cccCCcchhhhccccCHhHHhhhcC
Confidence 57777654332 222 2444455665443 3788989999999999999766654
No 84
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.98 E-value=6.7e-09 Score=97.27 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=42.1
Q ss_pred EEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEE
Q 004012 51 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFV 106 (779)
Q Consensus 51 kVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l 106 (779)
.+||.+|+.. .++|.|.+| ||++++|||+.+||.||++||||+.+....+..+
T Consensus 16 ~~lL~~r~~~--~~~~~w~lP-gG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~ 68 (118)
T cd04674 16 GLLVIRRGIE--PGRGKLALP-GGFIELGETWQDAVARELLEETGVAVDPADIRLF 68 (118)
T ss_pred CEEEEEeecC--CCCCeEECC-ceecCCCCCHHHHHHHHHHHHHCCcccccEEEEE
Confidence 4666666643 357999999 9999999999999999999999999754344443
No 85
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.85 E-value=2.9e-08 Score=99.89 Aligned_cols=42 Identities=29% Similarity=0.535 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCcc
Q 004012 51 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 98 (779)
Q Consensus 51 kVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v 98 (779)
+||+.+|+. +|.|.+| ||++++||++.+||.||++||||+.+
T Consensus 50 ~vLl~~r~~-----~g~walP-GG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 50 QFVAIKRPD-----SGEWAIP-GGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred EEEEEEeCC-----CCcCcCC-eeeccCCCCHHHHHHHHHHHHHcccc
Confidence 688888854 4899999 99999999999999999999997653
No 86
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.76 E-value=8.2e-08 Score=90.83 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=39.4
Q ss_pred EEEEEEecCCC-EEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCcc
Q 004012 40 VNAWIFAESTQ-ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 98 (779)
Q Consensus 40 v~v~V~~~~~g-kVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v 98 (779)
+.+++.+..++ +|++.|++. +.|.+| ||++++|||+.+||+||++||||+.+
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~------~~~~lP-gG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL------AGFQIV-KGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC------CcEECC-CccCCCCCCHHHHHHHHHHHHHCCee
Confidence 44555552222 566665432 459999 99999999999999999999999985
No 87
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.76 E-value=5.5e-08 Score=91.55 Aligned_cols=118 Identities=20% Similarity=0.364 Sum_probs=68.3
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHH-HHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI-SAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~e-AAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
.+.+.+.....+++|+++|.... +.|.+| ||+++.||++.+ ||+||++||||+.+....+..++.+........
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGS 87 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcc
Confidence 44444444222789999888653 699999 999999999888 999999999999875323444444432211110
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCC---ccceeeEEEeCHHHHHhH
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQ---QTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~---~~Ev~e~~Wv~~eEl~~~ 163 (779)
. .........+......... ..+... ..|...+.|+++.++...
T Consensus 88 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~ 134 (161)
T COG0494 88 S-VGGREHRVFFVAEVDDSLA-VAIEGLSAPSEELEDLEWVPLDELAAL 134 (161)
T ss_pred c-ccceEEEEEEeeecccccc-ccccccCCCcchhhceeeeeHHHcccc
Confidence 0 0001111112121110000 011111 258889999999998664
No 88
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.76 E-value=6.3e-09 Score=109.33 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=71.1
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCC
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~ 117 (779)
.+|-++|++++..++||. |. ++.-||+|+.+ +|.+|+|||++||++||++||+|++|+. +.++... +.+-
T Consensus 188 PvVIm~li~~d~~~~LL~-R~--~r~~~gl~t~l-AGFlEpGES~eeav~REtwEEtGi~V~~--I~~~asQ----PWP~ 257 (345)
T KOG3084|consen 188 PVVIMLLIDHDGKHALLG-RQ--KRYPPGLWTCL-AGFLEPGESIEEAVRRETWEETGIEVEV--ISYVASQ----PWPL 257 (345)
T ss_pred CeEEEEEEcCCCCEeeee-cc--cCCCCchhhhh-hccCCccccHHHHHHHHHHHHhCceeee--EeeeecC----CCCC
Confidence 356666677443456665 43 34568999998 9999999999999999999999999743 3332211 1110
Q ss_pred CcccceEEEEEEEEEEcCCCCCcCccCCcc-ceeeEEEeCHHHHHhHHh
Q 004012 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQT-EVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 118 g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~-Ev~e~~Wv~~eEl~~~l~ 165 (779)
....+. ++.+.+ .... ..+..+.+ |.++.+|++-+|+.+.+.
T Consensus 258 ---~p~SLM-Igc~al-a~~~-~~I~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 258 ---MPQSLM-IGCLAL-AKLN-GKISVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred ---CchHHH-HHHHHH-HhhC-CccccCcchhhhhcccccHHHHHHHHH
Confidence 000000 000000 0000 22466666 999999999999999886
No 89
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.75 E-value=2.4e-08 Score=101.27 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=78.7
Q ss_pred eeEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeccccccCCCCC-CHHHHHHHHHHHHhCCccCCCCeEEEEEEEee
Q 004012 36 YHRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGD-SSLISAQRELQEELGINLPKDAFEFVFTFLQQ 112 (779)
Q Consensus 36 ~hr~v~v~V~~~~~g--kVLL~rRs~~k~~~pG~W~~PvGG~ve~GE-t~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~ 112 (779)
...+|.+.+++..++ +|||+||+...+.++|.-.+| ||..++.+ |-..||+||..||+|++.. .+..++.....
T Consensus 42 ~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s~~~tAlREt~EEIGl~~~--~~~~~g~l~~~ 118 (246)
T KOG3069|consen 42 RKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKSDIQTALRETEEEIGLDPE--LVDVLGALPPF 118 (246)
T ss_pred CCccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccchHHHHHHHHHHHhCCCHH--Hhhhhhhccce
Confidence 345677777764233 699999999999999999999 99999986 6678999999999999853 33444433211
Q ss_pred cccCCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 113 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 113 ~~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
.. ..+ + .+ .-+.+.+....-.....++.+|+.++.|+|++++..
T Consensus 119 ~~-r~~-~---~v-~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 119 VL-RSG-W---SV-FPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred ee-ccC-c---cc-ceeEEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence 11 111 1 11 111122211100012578899999999999999955
No 90
>PLN03143 nudix hydrolase; Provisional
Probab=98.73 E-value=1.2e-07 Score=101.49 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=88.5
Q ss_pred EEECCCCccccccccccccc--cCCc------e-e-EEEEEEEEecCCCE--EEEEEeCCCCCCCCCCeeccccccCCCC
Q 004012 12 DVLTMTGQKTGITKPRSEVH--RVGD------Y-H-RTVNAWIFAESTQE--LLLQRRADFKDSWPGMWDISSAGHISAG 79 (779)
Q Consensus 12 ~vvd~~~~~~G~~~~R~~~h--~~g~------~-h-r~v~v~V~~~~~gk--VLL~rRs~~k~~~pG~W~~PvGG~ve~G 79 (779)
.-||-.|+.+|..+-|...- ..|. . | .+|+++++...+++ ++|+++.... ...-.|++| ||.+|++
T Consensus 93 ~~vd~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~p-vg~~~lE~P-AG~lD~~ 170 (291)
T PLN03143 93 QGVDMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVP-VGKFVLELP-AGMLDDD 170 (291)
T ss_pred EEEecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecC-CCcEEEEec-ccccCCC
Confidence 34666677777754444332 2331 1 2 24555554212344 8888765432 233589999 9999985
Q ss_pred -CCHHHHHHHHHHHHhCCccCCCCeEEEEEEEe-----ecccCCCcccceEEEEEEEEEEcCCCC-C----c--CccCCc
Q 004012 80 -DSSLISAQRELQEELGINLPKDAFEFVFTFLQ-----QNVINDGKFINNEFADVYLVTTLNPIP-L----E--AFTLQQ 146 (779)
Q Consensus 80 -Et~~eAAlREl~EEtGl~v~~~~l~~l~~~~~-----~~~~~~g~~~~~e~~~vf~~~~~~~~~-~----~--~i~~~~ 146 (779)
|++.+||+||++||||+.+...++..+..+.. ......| ...+..++|.+....+.. . . .-..++
T Consensus 171 ~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG--~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~de 248 (291)
T PLN03143 171 KGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPG--GCDEEISLFLYRGHVDKETIRQLQGKETGLRDH 248 (291)
T ss_pred CCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCC--ccCCeEEEEEEccccchhhhcccccccCCCCCC
Confidence 89999999999999999865455555532110 0011122 234566777765321110 0 0 012245
Q ss_pred cceeeEEEeCHHHHHhHHh
Q 004012 147 TEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 147 ~Ev~e~~Wv~~eEl~~~l~ 165 (779)
+|.-++.|++++++..++.
T Consensus 249 gE~Iev~~vpl~eiw~~~a 267 (291)
T PLN03143 249 GELIKVHVVPYRELWRMTA 267 (291)
T ss_pred CcEEEEEEEEHHHHHHHHH
Confidence 7888899999999988764
No 91
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-07 Score=90.05 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=73.0
Q ss_pred eEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEE-eec
Q 004012 37 HRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL-QQN 113 (779)
Q Consensus 37 hr~v~v~V~~~~~g--kVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~-~~~ 113 (779)
..+++|+.+..... +|||+.-+.. |..|-+| +||+|++|+..+||+||+.||.|+.-.. .+.++.+. +..
T Consensus 9 r~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~P-KGGwE~dE~~~eAA~REt~EEAGv~G~l--~~~~~g~~~~~~ 81 (145)
T KOG2839|consen 9 RLVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVP-KGGWEPDESVEEAALRETWEEAGVKGKL--GRLLGGFEDFLS 81 (145)
T ss_pred EEEEEeeeeeecCcceEEEEEecCCC----CCCccCC-CCCCCCCCCHHHHHHHHHHHHhCceeee--eccccchhhccC
Confidence 45677777764344 7999865542 5689999 9999999999999999999999998432 22233332 211
Q ss_pred ccCCCcccceEEEEEEEEEEcCCCCCcCccC-CccceeeEEEeCHHHHHhHHh
Q 004012 114 VINDGKFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 114 ~~~~g~~~~~e~~~vf~~~~~~~~~~~~i~~-~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
.... ...-.++|.+....... .-+ ...|..+.+|+.++|..+.+.
T Consensus 82 ~~~~----~~~k~~~~~l~v~e~le---~wp~~~~~~r~r~W~~ledA~~~~~ 127 (145)
T KOG2839|consen 82 KKHR----TKPKGVMYVLAVTEELE---DWPESEHEFREREWLKLEDAIELCQ 127 (145)
T ss_pred hhhc----ccccceeehhhhhhhcc---cChhhhcccceeEEeeHHHHHHHHh
Confidence 1111 11223455544333221 111 124588999999999988765
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=2e-08 Score=106.06 Aligned_cols=115 Identities=23% Similarity=0.386 Sum_probs=80.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
.++.+|+|. +++||+++..+.....+|.|.+| +|.|++||+++++|+||++||||++.....+ ..+...+ +.
T Consensus 117 gvg~~V~n~-~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~i~~gavrEvkeetgid~ef~eV---la~r~~H---~~ 188 (295)
T KOG0648|consen 117 GVGAFVLNK-KKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGEDIWHGAVREVKEETGIDTEFVEV---LAFRRAH---NA 188 (295)
T ss_pred eeeeeEecC-CceeEEEEecccceeeccccccc-ceEecccccchhhhhhhhHHHhCcchhhhhH---HHHHhhh---cc
Confidence 488899995 47999998767767789999999 8899999999999999999999997543222 2222211 11
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.......++|..+...+ ..-++..+..|+..+.||+++++...
T Consensus 189 -~~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~q 231 (295)
T KOG0648|consen 189 -TFGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVSQ 231 (295)
T ss_pred -hhhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhcc
Confidence 11111334444433333 22346778899999999999988654
No 93
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.42 E-value=3.9e-06 Score=77.30 Aligned_cols=102 Identities=16% Similarity=0.234 Sum_probs=66.5
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCC
Q 004012 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (779)
Q Consensus 39 ~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g 118 (779)
.+.++++. .++++||+||.. ++.|+|+|+|| +|.++.+|+..++..|++.+|.++.. ..++.+.+.. +
T Consensus 4 ~~~~~ii~-~~~~~ll~kR~~-~gl~~glwefP-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~H~f--t-- 71 (118)
T cd03431 4 GIAVVVIR-NDGRVLLEKRPE-KGLLAGLWEFP-SVEWEEEADGEEALLSALKKALRLSL-----EPLGTVKHTF--T-- 71 (118)
T ss_pred EEEEEEEe-cCCeEEEEECCC-CCCCCcceeCC-CccccCCcCHHHHHHHHHHHHhCccc-----ccceeEEEec--C--
Confidence 33444444 368999999975 47899999999 99999999999999999999876411 1122222211 1
Q ss_pred cccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 119 ~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
+.+-..++|.+...... .+..++.|++++++.++
T Consensus 72 --h~~~~~~~~~~~~~~~~---------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 72 --HFRLTLHVYLARLEGDL---------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred --CeEEEEEEEEEEEeCCC---------cCccccEEccHHHHhhC
Confidence 11224456665543210 24567899999999653
No 94
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.18 E-value=4.5e-05 Score=75.68 Aligned_cols=110 Identities=23% Similarity=0.141 Sum_probs=68.0
Q ss_pred CCCE--EEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCcccceEE
Q 004012 48 STQE--LLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125 (779)
Q Consensus 48 ~~gk--VLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~ 125 (779)
.+|+ ++|++.-+. ....-..++| +|-++.|||+..||+||++||||..-. +.......+. ++|-...+.+
T Consensus 84 ~dG~~~ivL~kQfRp-P~Gk~ciElP-AGLiD~ge~~~~aAiREl~EEtGy~gk---v~~~s~~~f~---DPGltn~~~~ 155 (225)
T KOG3041|consen 84 SDGKPYIVLVKQFRP-PTGKICIELP-AGLIDDGEDFEGAAIRELEEETGYKGK---VDMVSPTVFL---DPGLTNCNLC 155 (225)
T ss_pred cCCcEEEEEEEeecC-CCCcEEEEcc-cccccCCCchHHHHHHHHHHHhCccce---eeeccccEEc---CCCCCCCceE
Confidence 4564 666654322 2333478999 999999999999999999999999832 1211111111 1231123344
Q ss_pred EEEEEEEEcCCCCCcCc-cCCccceeeEEEeCHHHHHhHHh
Q 004012 126 ADVYLVTTLNPIPLEAF-TLQQTEVSAVKYIAYEEYKNLLA 165 (779)
Q Consensus 126 ~~vf~~~~~~~~~~~~i-~~~~~Ev~e~~Wv~~eEl~~~l~ 165 (779)
..++.+..+.+....++ .+++.|.-++..++..+|.+.+.
T Consensus 156 iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~ 196 (225)
T KOG3041|consen 156 IVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELA 196 (225)
T ss_pred EEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHH
Confidence 45555544333222222 34568999999999999987665
No 95
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.74 E-value=0.00011 Score=67.88 Aligned_cols=93 Identities=20% Similarity=0.362 Sum_probs=58.3
Q ss_pred CCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCccc-----------ceEEEEEEEEEE
Q 004012 65 PGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFI-----------NNEFADVYLVTT 133 (779)
Q Consensus 65 pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~-----------~~e~~~vf~~~~ 133 (779)
-|.|.+| -|....||+++.||.||..||+||.++ .-...++.+.+ ++|... ......+|.++.
T Consensus 35 ~GAWSIP-KGey~~gEdp~~AArREf~EE~Gi~vd-GP~~~lG~~kQ----~GGKvVta~~veae~Dva~~rSntFe~eW 108 (161)
T COG4119 35 DGAWSIP-KGEYTGGEDPWLAARREFSEEIGICVD-GPRIDLGSLKQ----SGGKVVTAFGVEAELDVADARSNTFELEW 108 (161)
T ss_pred CCccccc-ccccCCCcCHHHHHHHHhhhhhceeec-Cchhhhhhhcc----CCCcEEEEEeeeeeeehhhhhcceeeeec
Confidence 3899999 999999999999999999999999874 22333343332 122100 000112233332
Q ss_pred cCCCCCcCccCCc-cceeeEEEeCHHHHHhHHhcC
Q 004012 134 LNPIPLEAFTLQQ-TEVSAVKYIAYEEYKNLLAKD 167 (779)
Q Consensus 134 ~~~~~~~~i~~~~-~Ev~e~~Wv~~eEl~~~l~~~ 167 (779)
+... -.... .|++..-|+++.+....+..+
T Consensus 109 PprS----G~M~~FPEVDRagWF~l~eAr~Kil~g 139 (161)
T COG4119 109 PPRS----GKMRKFPEVDRAGWFPLAEARTKILKG 139 (161)
T ss_pred CCCC----CccccCcccccccceecHHHHhHHhhc
Confidence 2110 01111 589999999999998877654
No 96
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.23 E-value=0.00058 Score=63.21 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=53.7
Q ss_pred EEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCccc
Q 004012 42 AWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFI 121 (779)
Q Consensus 42 v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~ 121 (779)
+++++ .+|++||+||.. ++.|.|+|+|| .--.+ +++..+.+.+.+.+..|+.+... ..++++.+.. + +
T Consensus 2 ~~i~~-~~~~~Ll~kRp~-~gll~GLwefP-~~e~~-~~~~~~~l~~~~~~~~~~~~~~~--~~~~~v~H~f--S----H 69 (114)
T PF14815_consen 2 LLIIR-SQGRVLLEKRPE-KGLLAGLWEFP-LIESD-EEDDEEELEEWLEEQLGLSIRSV--EPLGTVKHVF--S----H 69 (114)
T ss_dssp EEEEE-TTSEEEEEE--S-SSTTTT-EE---EEE-S-SS-CHHHHHHHTCCSSS-EEEE---S-SEEEEEE---S----S
T ss_pred EEEEE-eCCEEEEEECCC-CChhhcCcccC-EeCcc-CCCCHHHHHHHHHHHcCCChhhh--eecCcEEEEc--c----c
Confidence 34555 589999999975 47899999999 65555 33334555555556667654321 1233333221 1 1
Q ss_pred ceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 122 NNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 122 ~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
.+-..++|.+.+..... .+..++.|++++++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~--------~~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 70 RRWTIHVYEVEVSADPP--------AEPEEGQWVSLEELDQY 103 (114)
T ss_dssp EEEEEEEEEEEEE-SS------------TTEEEEEGGGGGGS
T ss_pred eEEEEEEEEEEecCCCC--------CCCCCcEEEEHHHHhhC
Confidence 23356777777654321 14578899999999653
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.47 E-value=0.025 Score=54.78 Aligned_cols=127 Identities=17% Similarity=0.319 Sum_probs=77.1
Q ss_pred cccccccCCceeEEE-EEEEEecCCCEEEEEEeCCCC--CCCCCCeeccccccCCCCC--CHHHH-----HHHHHHHHhC
Q 004012 26 PRSEVHRVGDYHRTV-NAWIFAESTQELLLQRRADFK--DSWPGMWDISSAGHISAGD--SSLIS-----AQRELQEELG 95 (779)
Q Consensus 26 ~R~~~h~~g~~hr~v-~v~V~~~~~gkVLL~rRs~~k--~~~pG~W~~PvGG~ve~GE--t~~eA-----AlREl~EEtG 95 (779)
.|..+.........+ .|+|.+ +++||+-.|-... ....|.+.+-+|||+..++ ++.+. +.||+.||.+
T Consensus 49 rRgdaEeDp~~KQ~IpYvvi~~--edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~ 126 (203)
T COG4112 49 RRGDAEEDPTTKQVIPYVVIMD--EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVD 126 (203)
T ss_pred hccccccCccccccccEEEEec--CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhC
Confidence 355665555444444 444444 5799999886432 2235788888999998876 33333 6699999999
Q ss_pred CccCC-CCeEEEEEEEeecccCCCcccce-EEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004012 96 INLPK-DAFEFVFTFLQQNVINDGKFINN-EFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 96 l~v~~-~~l~~l~~~~~~~~~~~g~~~~~-e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~~ 163 (779)
+.... ..+..+|-+.-.. +. .++ .+..+|..+... +++.....+.-+++|+..+++.+.
T Consensus 127 vseqd~q~~e~lGlINdd~---ne--VgkVHiG~lf~~~~k~----ndvevKEkd~~~~kwik~~ele~~ 187 (203)
T COG4112 127 VSEQDLQELEFLGLINDDT---NE--VGKVHIGALFLGRGKF----NDVEVKEKDLFEWKWIKLEELEKF 187 (203)
T ss_pred cCHHHhhhheeeeeecCCC---cc--cceEEEEEEEEeeccc----cceeeeecceeeeeeeeHHHHHHH
Confidence 98432 3355555443211 11 111 244555554321 223444567778999999999773
No 98
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.046 Score=55.53 Aligned_cols=40 Identities=30% Similarity=0.525 Sum_probs=34.5
Q ss_pred EEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCC
Q 004012 51 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 96 (779)
Q Consensus 51 kVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl 96 (779)
+++.+||+.. |.|.+| ||-+++||-+..+..||..||.=-
T Consensus 140 e~vavkr~d~-----~~WAiP-GGmvdpGE~vs~tLkRef~eEa~n 179 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWAIP-GGMVDPGEKVSATLKREFGEEAMN 179 (275)
T ss_pred EEEEEecCCC-----CcccCC-CCcCCchhhhhHHHHHHHHHHHHH
Confidence 4666778764 899999 999999999999999999999743
No 99
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=94.06 E-value=0.057 Score=56.35 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=46.7
Q ss_pred cchhhhhhhhcccccCCCCcccCCCcccccchhhhhccchHHhHHHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Q 004012 592 SFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWALKFLIGRDLLPKSLVKSMYVS 665 (779)
Q Consensus 592 ~~~~~v~lHElgHg~G~~~~~~~~~~~~t~~~~~~~~~s~~EE~rAd~~glyl~~~l~~~g~~~~~~~~~~y~~ 665 (779)
..+.-|++|||||-+|.-..+ .......|+.-..+.||.+||+.++++| .+.|+.......+.|+.
T Consensus 201 ~~yyaTl~HElghwtgh~~rl-----~rdLs~~~~sr~yA~eel~aEi~a~~~c---~~lgi~p~~~~haayig 266 (316)
T COG4227 201 INYYATLLHELGHWTGHEARL-----DRDLSRAFGSREYAFEELVAEIGAAFLC---ATLGIVPTVRDHAAYIG 266 (316)
T ss_pred HhHHHHHHHHhccccCchhhh-----hhhhccccchhHHHHHHHHHHHhhhhee---cccccCCchhhHHHHHH
Confidence 445689999999999973222 1244556777789999999999999999 44576544433455543
No 100
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=90.09 E-value=1.4 Score=44.50 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=64.2
Q ss_pred cCCceeEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCC---e-EE
Q 004012 32 RVGDYHRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDA---F-EF 105 (779)
Q Consensus 32 ~~g~~hr~v~v~V~~~~~g--kVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~---l-~~ 105 (779)
..|..+.+-++++++. .+ .|||.|... ..|.+| ||.+.+||+..++..|.+.+-+|..-.... + ..
T Consensus 39 ~~GmRrsVe~Vllvh~-h~~PHvLLLq~~~------~~fkLP-Gg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~ 110 (188)
T PF13869_consen 39 KEGMRRSVEGVLLVHE-HGHPHVLLLQIGN------TFFKLP-GGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGEC 110 (188)
T ss_dssp HHSSEEEEEEEEEEEE-TTEEEEEEEEETT------TEEE-S-EEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEE
T ss_pred HhCCceEEEEEEEEec-CCCcEEEEEeccC------ccccCC-ccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCE
Confidence 5777676777777763 44 588877654 378999 999999999999999999999998732211 1 13
Q ss_pred EEEEEeec------cc-CCCcccceEEEEEEEEEEcCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004012 106 VFTFLQQN------VI-NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (779)
Q Consensus 106 l~~~~~~~------~~-~~g~~~~~e~~~vf~~~~~~~~~~~~i~~~~~Ev~e~~Wv~~eEl~~ 162 (779)
++.+.... ++ +.-.....|+..+|.+.+..... +... .-....-+|+=||-+
T Consensus 111 l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~---F~VP--kn~kL~AvPLFeLyd 169 (188)
T PF13869_consen 111 LGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCL---FAVP--KNMKLVAVPLFELYD 169 (188)
T ss_dssp EEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEE---EEEE--TTSEEEEEEHHHHTT
T ss_pred EEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCce---EecC--CCCeEEeecHhhhhc
Confidence 34443210 00 01111346788899888754321 2211 223445567766643
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=88.51 E-value=2.1 Score=45.71 Aligned_cols=126 Identities=22% Similarity=0.298 Sum_probs=76.9
Q ss_pred eeEEEEEEEEecCCCE-EEEEE-eCC-----CCCCCCC-------------------CeeccccccCCCCCCHHHHHHHH
Q 004012 36 YHRTVNAWIFAESTQE-LLLQR-RAD-----FKDSWPG-------------------MWDISSAGHISAGDSSLISAQRE 89 (779)
Q Consensus 36 ~hr~v~v~V~~~~~gk-VLL~r-Rs~-----~k~~~pG-------------------~W~~PvGG~ve~GEt~~eAAlRE 89 (779)
.|-+|.|+++|....+ ||++| |+. .....+| ..++ |.|.++..-+..+-|.||
T Consensus 228 ~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlEL-cag~Vd~p~s~~e~a~~e 306 (405)
T KOG4432|consen 228 CHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLEL-CAGRVDDPFSDPEKAARE 306 (405)
T ss_pred CCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeee-ecccCCCCcccHHHHHHH
Confidence 5889999999965555 44433 211 0000111 2344 378888778888999999
Q ss_pred HHHHhCCccCCCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCCCCCc--CccCCccceeeEEEeCHHHHHhHHhcC
Q 004012 90 LQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLE--AFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (779)
Q Consensus 90 l~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~~~~~--~i~~~~~Ev~e~~Wv~~eEl~~~l~~~ 167 (779)
..||.|.+++.++++.+..+..-... .| ....+|.+++....... --..+++|.-+..-+|++++..+..++
T Consensus 307 ~veecGYdlp~~~~k~va~y~sGVG~-SG-----~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~q~ 380 (405)
T KOG4432|consen 307 SVEECGYDLPEDSFKLVAKYISGVGQ-SG-----DTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYRQH 380 (405)
T ss_pred HHHHhCCCCCHHHHhhhheeecccCC-cC-----CeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHhcc
Confidence 99999999887777776555321111 11 23455667664321110 012234577788889999999988764
Q ss_pred C
Q 004012 168 D 168 (779)
Q Consensus 168 ~ 168 (779)
.
T Consensus 381 ~ 381 (405)
T KOG4432|consen 381 N 381 (405)
T ss_pred C
Confidence 3
No 102
>PRK10880 adenine DNA glycosylase; Provisional
Probab=86.24 E-value=3.5 Score=46.04 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=32.8
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCc
Q 004012 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGIN 97 (779)
Q Consensus 38 r~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~ 97 (779)
+...++++. .++++||.||... +.|.|+|+|| +. + + +..+++..|+.|+.
T Consensus 231 ~~~~~~~~~-~~~~~~l~~r~~~-gl~~gl~~fP-~~--~---~--~~~~~~~~~~~~~~ 280 (350)
T PRK10880 231 RTGYFLLLQ-HGDEVWLEQRPPS-GLWGGLFCFP-QF--A---D--EEELRQWLAQRGIA 280 (350)
T ss_pred EEEEEEEEE-ECCEEEEEECCcc-ChhhccccCC-CC--c---c--hhhHHHHHHhcCCc
Confidence 344444444 3689999999754 7889999999 42 2 1 11245566778875
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=85.73 E-value=2.1 Score=45.78 Aligned_cols=62 Identities=23% Similarity=0.242 Sum_probs=47.8
Q ss_pred eeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCcccceEEEEEEEEEEcCC
Q 004012 68 WDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNP 136 (779)
Q Consensus 68 W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~~~~~~ 136 (779)
.++ |||-|+..-|+.+-|..|+.||.|.+++++++..+.+|..-.+-++ .-.++|.+++...
T Consensus 81 iel-c~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~------sa~~l~y~ei~es 142 (405)
T KOG4432|consen 81 IEL-CAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSG------SAQHLYYAEIDES 142 (405)
T ss_pred eee-eccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCc------cchheeeeecchh
Confidence 455 4899999999999999999999999999999888877754332211 2567888887543
No 104
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=82.73 E-value=0.26 Score=53.25 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=63.2
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhCCccCCCCeEEEEEEEeecccCCCc
Q 004012 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (779)
Q Consensus 40 v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtGl~v~~~~l~~l~~~~~~~~~~~g~ 119 (779)
.+..++++.-.++||++-.. ...|.+| -|++...|+-..|++||+.||||-++........+ +.. .
T Consensus 85 ~ga~ild~~~sr~llv~g~q-----a~sw~fp-rgK~~kdesd~~caiReV~eetgfD~skql~~~e~-Ie~--n----- 150 (348)
T KOG2937|consen 85 RGAIILDEKRSRCLLVKGWQ-----ASSWSFP-RGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-IET--N----- 150 (348)
T ss_pred chHhhhhhhhhhhheeecee-----ccccccc-CccccccchhhhcchhcccchhhcCHHHHhccccC-ccc--c-----
Confidence 44555664334688876432 2459999 99999999999999999999999997431111111 100 0
Q ss_pred ccceEEEEEEEEEEcCCCCCcCccCC---ccceeeEEEeCHHHHHhH
Q 004012 120 FINNEFADVYLVTTLNPIPLEAFTLQ---QTEVSAVKYIAYEEYKNL 163 (779)
Q Consensus 120 ~~~~e~~~vf~~~~~~~~~~~~i~~~---~~Ev~e~~Wv~~eEl~~~ 163 (779)
+....+.+|..-..+. .+... --|++...|..++++...
T Consensus 151 -I~dq~~~~fIi~gvs~----d~~f~~~v~~eis~ihW~~l~~l~~t 192 (348)
T KOG2937|consen 151 -IRDQLVRLFIINGVSE----DTNFNPRVRKEISKIHWHYLDHLVPT 192 (348)
T ss_pred -hhhceeeeeeecccee----eeecchhhhccccceeeeehhhhccc
Confidence 1112344444321111 11222 258889999999999543
No 105
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=77.64 E-value=0.89 Score=44.54 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.7
Q ss_pred chhhhhhhhcccccCCCC
Q 004012 593 FFTHNICHECCHGIGPHS 610 (779)
Q Consensus 593 ~~~~v~lHElgHg~G~~~ 610 (779)
....|++|||||.+|-.+
T Consensus 106 ~~~~~~~HEiGHaLGL~H 123 (157)
T cd04278 106 DLFSVAAHEIGHALGLGH 123 (157)
T ss_pred hHHHHHHHHhccccccCC
Confidence 356899999999999643
No 106
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=76.70 E-value=0.91 Score=44.40 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.1
Q ss_pred hhhhhhhhcccccCCCC
Q 004012 594 FTHNICHECCHGIGPHS 610 (779)
Q Consensus 594 ~~~v~lHElgHg~G~~~ 610 (779)
+..|++||+||.+|--+
T Consensus 104 ~~~~~~HEiGHaLGL~H 120 (156)
T cd04279 104 LQAIALHELGHALGLWH 120 (156)
T ss_pred HHHHHHHHhhhhhcCCC
Confidence 46899999999999633
No 107
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=75.79 E-value=0.88 Score=44.58 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.3
Q ss_pred cchhhhhhhhcccccCCCC
Q 004012 592 SFFTHNICHECCHGIGPHS 610 (779)
Q Consensus 592 ~~~~~v~lHElgHg~G~~~ 610 (779)
....+|++|||||.+|-.+
T Consensus 92 ~~~~~~~~HEiGHaLGL~H 110 (165)
T cd04268 92 ARLRNTAEHELGHALGLRH 110 (165)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3457999999999999643
No 108
>PF14443 DBC1: DBC1
Probab=75.21 E-value=14 Score=34.98 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCCeeccc-cccCCCC-CCHHHHHHHHHHHHhCCccCC-CCeEEEEEEEeecccCCCcccceEEEEEEEE
Q 004012 65 PGMWDISS-AGHISAG-DSSLISAQRELQEELGINLPK-DAFEFVFTFLQQNVINDGKFINNEFADVYLV 131 (779)
Q Consensus 65 pG~W~~Pv-GG~ve~G-Et~~eAAlREl~EEtGl~v~~-~~l~~l~~~~~~~~~~~g~~~~~e~~~vf~~ 131 (779)
.|.|+..- ||....+ .++..+|+|=+++-|||+... .+...+..++|......+.....+++.+|+-
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct~W~rf~Ei~Y~R~~~~~~~~~~EivVlFlP 92 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCTQWYRFAEIHYYRPGSDGFPSHQEIVVLFLP 92 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcCccceeeEEEEecCCCCCCCceeEEEEEEec
Confidence 36776642 4455553 367899999999999999643 2323333444433222222223455555543
No 109
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=73.36 E-value=1.1 Score=43.38 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=14.9
Q ss_pred cchhhhhhhhcccccCCCC
Q 004012 592 SFFTHNICHECCHGIGPHS 610 (779)
Q Consensus 592 ~~~~~v~lHElgHg~G~~~ 610 (779)
.....|++||+||.+|=.+
T Consensus 103 ~~~~~v~~HEiGHaLGL~H 121 (154)
T PF00413_consen 103 NDLQSVAIHEIGHALGLDH 121 (154)
T ss_dssp EEHHHHHHHHHHHHTTBES
T ss_pred hhhhhhhhhccccccCcCc
Confidence 3456899999999999533
No 110
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=72.50 E-value=1.2 Score=44.82 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.5
Q ss_pred cchhhhhhhhcccccCCCC
Q 004012 592 SFFTHNICHECCHGIGPHS 610 (779)
Q Consensus 592 ~~~~~v~lHElgHg~G~~~ 610 (779)
.+..+|++||+||.+|-.+
T Consensus 111 ~~~~~t~~HEiGHaLGL~H 129 (186)
T cd04277 111 SYGYQTIIHEIGHALGLEH 129 (186)
T ss_pred hhhHHHHHHHHHHHhcCCC
Confidence 4557999999999999643
No 111
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=71.61 E-value=17 Score=38.37 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=34.7
Q ss_pred EEEEEeCCCCCCCCCCeeccccccC-CCCCCHHHHHHHHHHHHhCCcc
Q 004012 52 LLLQRRADFKDSWPGMWDISSAGHI-SAGDSSLISAQRELQEELGINL 98 (779)
Q Consensus 52 VLL~rRs~~k~~~pG~W~~PvGG~v-e~GEt~~eAAlREl~EEtGl~v 98 (779)
+||++|.-++ -+.|-|| -+.. +.|+++.-+|.|++++-.|-..
T Consensus 141 yLLV~~k~g~---~s~w~fP-~~~~s~~~~~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 141 YLLVKRKFGK---SSVWIFP-NRQFSSSEKTLRGHAERDLKVLSGENK 184 (263)
T ss_pred EEEEeeccCc---cceeeCC-CcccCCccchHHHHHHHHHHHHhcchh
Confidence 6667655443 3699999 7777 9999999999999999988763
No 112
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=70.36 E-value=8.2 Score=38.09 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=41.2
Q ss_pred CCceeEEEEEEEEecCC-CEEEEEEeCCCCCCCCCCeeccccccCCCCCCHHHHHHHHHHHHhC
Q 004012 33 VGDYHRTVNAWIFAEST-QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELG 95 (779)
Q Consensus 33 ~g~~hr~v~v~V~~~~~-gkVLL~rRs~~k~~~pG~W~~PvGG~ve~GEt~~eAAlREl~EEtG 95 (779)
.|....+-++++++... ..|||.|-.. -...+| ||.+.+||+-.+...|-+.|-+|
T Consensus 66 ~gmRrsvegvlivheH~lPHvLLLQig~------tf~KLP-GG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEHNLPHVLLLQIGN------TFFKLP-GGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred hhhhheeeeeEEEeecCCCeEEEEeeCC------EEEecC-CCccCCCcchhHHHHHHHHHHhc
Confidence 45555666666766211 3566665432 367788 99999999999999999999999
No 113
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=66.43 E-value=1.8 Score=41.35 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.7
Q ss_pred hhhhhhcccccCCCC
Q 004012 596 HNICHECCHGIGPHS 610 (779)
Q Consensus 596 ~v~lHElgHg~G~~~ 610 (779)
.|++||+||.+|-.+
T Consensus 88 ~~~~HEigHaLGl~H 102 (140)
T smart00235 88 GVAAHELGHALGLYH 102 (140)
T ss_pred ccHHHHHHHHhcCCc
Confidence 499999999999643
No 114
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=64.85 E-value=2.2 Score=41.69 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.8
Q ss_pred cchhhhhhhhcccccCCC
Q 004012 592 SFFTHNICHECCHGIGPH 609 (779)
Q Consensus 592 ~~~~~v~lHElgHg~G~~ 609 (779)
.....|+.|||||.+|-.
T Consensus 94 ~~~~~~~~HElGH~LGl~ 111 (167)
T cd00203 94 KEGAQTIAHELGHALGFY 111 (167)
T ss_pred ccchhhHHHHHHHHhCCC
Confidence 345789999999999963
No 115
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=58.49 E-value=3.2 Score=42.42 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.7
Q ss_pred chhhhhhhhcccccCCCC
Q 004012 593 FFTHNICHECCHGIGPHS 610 (779)
Q Consensus 593 ~~~~v~lHElgHg~G~~~ 610 (779)
.+..|++||+||.+|-.+
T Consensus 91 ~~~~~i~HElgHaLG~~H 108 (198)
T cd04327 91 EFSRVVLHEFGHALGFIH 108 (198)
T ss_pred hHHHHHHHHHHHHhcCcc
Confidence 455899999999999744
No 116
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=58.16 E-value=20 Score=38.74 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=24.2
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeecc
Q 004012 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDIS 71 (779)
Q Consensus 37 hr~v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~P 71 (779)
++.+.++++...++++|++||... +.+.|+|+||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~r~~~-~~~~gl~~~p 259 (275)
T TIGR01084 226 ERTTYFLVLQNYDGEVLLEQRPEK-GLWGGLYCFP 259 (275)
T ss_pred eEEEEEEEEEeCCCeEEEEeCCCC-chhhccccCC
Confidence 444444444324689999999754 6789999999
No 117
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=56.71 E-value=3.6 Score=44.12 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.3
Q ss_pred chhhhhhhhcccccCC
Q 004012 593 FFTHNICHECCHGIGP 608 (779)
Q Consensus 593 ~~~~v~lHElgHg~G~ 608 (779)
.+..|+.||+|||.|+
T Consensus 215 ~~~~v~vHE~GHsf~~ 230 (264)
T PF09471_consen 215 SFKQVVVHEFGHSFGG 230 (264)
T ss_dssp THHHHHHHHHHHHTT-
T ss_pred cccceeeeeccccccc
Confidence 4668899999999999
No 118
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=55.33 E-value=3.9 Score=41.33 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=13.6
Q ss_pred cchhhhhhhhcccccCC
Q 004012 592 SFFTHNICHECCHGIGP 608 (779)
Q Consensus 592 ~~~~~v~lHElgHg~G~ 608 (779)
.....|+.||+||.+|=
T Consensus 140 ~~~~~~~AHEiGH~lGa 156 (196)
T PF13688_consen 140 YNGAITFAHEIGHNLGA 156 (196)
T ss_dssp HHHHHHHHHHHHHHTT-
T ss_pred CceehhhHHhHHHhcCC
Confidence 34468999999999996
No 119
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=53.67 E-value=4.2 Score=37.80 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.7
Q ss_pred hhhhhhhcccccCC
Q 004012 595 THNICHECCHGIGP 608 (779)
Q Consensus 595 ~~v~lHElgHg~G~ 608 (779)
..|..||+||.+|-
T Consensus 108 ~~~~~HEiGH~lGl 121 (124)
T PF13582_consen 108 VDTFAHEIGHNLGL 121 (124)
T ss_dssp TTHHHHHHHHHTT-
T ss_pred ceEeeehhhHhcCC
Confidence 38899999999984
No 120
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=47.70 E-value=6.3 Score=41.36 Aligned_cols=14 Identities=29% Similarity=0.390 Sum_probs=12.6
Q ss_pred hhhhhhhcccccCC
Q 004012 595 THNICHECCHGIGP 608 (779)
Q Consensus 595 ~~v~lHElgHg~G~ 608 (779)
+.|+.|||||.+|-
T Consensus 146 ~~t~AHElGHnLGm 159 (228)
T cd04271 146 WQVFAHEIGHTFGA 159 (228)
T ss_pred ceehhhhhhhhcCC
Confidence 37999999999996
No 121
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=47.33 E-value=6.8 Score=41.49 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.6
Q ss_pred chhhhhhhhcccccCC
Q 004012 593 FFTHNICHECCHGIGP 608 (779)
Q Consensus 593 ~~~~v~lHElgHg~G~ 608 (779)
.+..|+.|||||.+|-
T Consensus 166 ~~a~t~AHElGHnlGm 181 (244)
T cd04270 166 ESDLVTAHELGHNFGS 181 (244)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3557899999999996
No 122
>PRK13910 DNA glycosylase MutY; Provisional
Probab=47.15 E-value=23 Score=38.55 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=21.1
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeecc
Q 004012 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDIS 71 (779)
Q Consensus 40 v~v~V~~~~~gkVLL~rRs~~k~~~pG~W~~P 71 (779)
..+++++ ++++||+||+ ++.|.|+|+||
T Consensus 189 ~~~~~~~--~~~~ll~kr~--~~l~~gl~~fP 216 (289)
T PRK13910 189 YLGVVIQ--NNQIALEKIE--QKLYLGMHHFP 216 (289)
T ss_pred EEEEEEE--CCEEEEEECC--CchhcccccCC
Confidence 3334444 5799999984 46899999999
No 123
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=45.18 E-value=8 Score=40.01 Aligned_cols=14 Identities=50% Similarity=0.584 Sum_probs=12.5
Q ss_pred hhhhhhhcccccCC
Q 004012 595 THNICHECCHGIGP 608 (779)
Q Consensus 595 ~~v~lHElgHg~G~ 608 (779)
.||+.|||||-.|-
T Consensus 134 ~hvi~HEiGH~IGf 147 (211)
T PF12388_consen 134 EHVITHEIGHCIGF 147 (211)
T ss_pred HHHHHHHhhhhccc
Confidence 48999999999995
No 124
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=44.43 E-value=7.5 Score=40.07 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.0
Q ss_pred hhhhhhhcccccCCCC
Q 004012 595 THNICHECCHGIGPHS 610 (779)
Q Consensus 595 ~~v~lHElgHg~G~~~ 610 (779)
.+|..||+||.+|=.+
T Consensus 138 ~~~~aHEiGH~lGl~H 153 (206)
T PF13583_consen 138 YQTFAHEIGHNLGLRH 153 (206)
T ss_pred chHHHHHHHHHhcCCC
Confidence 3778999999999643
No 125
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=43.51 E-value=8.1 Score=39.67 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.0
Q ss_pred hhhhhhhhcccccCCCC
Q 004012 594 FTHNICHECCHGIGPHS 610 (779)
Q Consensus 594 ~~~v~lHElgHg~G~~~ 610 (779)
..+++.||+||.+|-.+
T Consensus 116 ~~~~~~he~gh~lGl~h 132 (197)
T cd04276 116 LRYLLAHEVGHTLGLRH 132 (197)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 34899999999999644
No 126
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=42.60 E-value=7.4 Score=38.93 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=14.1
Q ss_pred cchhhhhhhhcccccCCCC
Q 004012 592 SFFTHNICHECCHGIGPHS 610 (779)
Q Consensus 592 ~~~~~v~lHElgHg~G~~~ 610 (779)
.+.++|+.||+||-+|-.+
T Consensus 109 ~~~~~~~aHElGH~lGa~H 127 (173)
T PF13574_consen 109 FFGIDTFAHELGHQLGAPH 127 (173)
T ss_dssp SHHHHHHHHHHHHHHT---
T ss_pred eeeeeeehhhhHhhcCCCC
Confidence 3478999999999999633
No 127
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=39.26 E-value=9.3 Score=38.49 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.5
Q ss_pred chhhhhhhhcccccCCCC
Q 004012 593 FFTHNICHECCHGIGPHS 610 (779)
Q Consensus 593 ~~~~v~lHElgHg~G~~~ 610 (779)
+...|++||+||.+|-.+
T Consensus 73 ~~~g~v~HE~~HalG~~H 90 (180)
T cd04280 73 FSLGTIVHELMHALGFYH 90 (180)
T ss_pred CcCchhHHHHHHHhcCcc
Confidence 336899999999999744
No 128
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=38.98 E-value=11 Score=37.97 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.5
Q ss_pred hhhhhhhhcccccCCC
Q 004012 594 FTHNICHECCHGIGPH 609 (779)
Q Consensus 594 ~~~v~lHElgHg~G~~ 609 (779)
...|+.|||||-+|-.
T Consensus 133 ~~~~~aHElGH~lG~~ 148 (192)
T cd04267 133 TALTMAHELGHNLGAE 148 (192)
T ss_pred ehhhhhhhHHhhcCCc
Confidence 3578999999999963
No 129
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=38.11 E-value=17 Score=40.13 Aligned_cols=38 Identities=16% Similarity=-0.000 Sum_probs=29.6
Q ss_pred hccCCCHHH---HHHHHHHHHHHHhhchhheeccCCCChhH
Q 004012 217 ELAGLSDAD---KEALVLVIKAATVMDEIFYLQVWYSNPVL 254 (779)
Q Consensus 217 df~~Ls~~E---k~y~~~l~~Aa~~g~~i~~~Q~~~e~~~i 254 (779)
.|..+++-+ +.|.||+.++.|.++-|-+-|++.+...+
T Consensus 22 ~l~~~~p~aan~~~Y~~hf~kgP~~e~~igFIqtyrdp~G~ 62 (417)
T KOG3675|consen 22 ALKLLSPTAANKMKYVHHFSKGPWYEGLIGFIQTYRDPAGS 62 (417)
T ss_pred HHHHhChhhhhhhhhhhhhhcCchhhhhhhhhhhccccccc
Confidence 344444444 49999999999999999999999755444
No 130
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=37.48 E-value=10 Score=38.38 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.1
Q ss_pred hhhhhhhhcccccCCCC
Q 004012 594 FTHNICHECCHGIGPHS 610 (779)
Q Consensus 594 ~~~v~lHElgHg~G~~~ 610 (779)
...|++||+||.+|-.+
T Consensus 77 ~~G~i~HEl~HaLG~~H 93 (182)
T cd04283 77 YKGIIQHELLHALGFYH 93 (182)
T ss_pred ccchHHHHHHHHhCCcc
Confidence 35799999999999744
No 131
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=37.35 E-value=11 Score=37.16 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=13.0
Q ss_pred hhhhhhhhcccccCCCCc
Q 004012 594 FTHNICHECCHGIGPHSI 611 (779)
Q Consensus 594 ~~~v~lHElgHg~G~~~~ 611 (779)
...|+.||+||-+|=.++
T Consensus 69 ~g~TltHEvGH~LGL~Ht 86 (154)
T PF05572_consen 69 FGKTLTHEVGHWLGLYHT 86 (154)
T ss_dssp SSHHHHHHHHHHTT---T
T ss_pred cccchhhhhhhhhccccc
Confidence 458999999999996553
No 132
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=36.68 E-value=9.8 Score=36.16 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.6
Q ss_pred hhhhhhhcccccCC
Q 004012 595 THNICHECCHGIGP 608 (779)
Q Consensus 595 ~~v~lHElgHg~G~ 608 (779)
+.|+.||+||-+|-
T Consensus 78 ~RIaaHE~GHiLGL 91 (132)
T PF02031_consen 78 TRIAAHELGHILGL 91 (132)
T ss_dssp HHHHHHHHHHHHT-
T ss_pred ceeeeehhccccCC
Confidence 56899999999984
No 133
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=34.67 E-value=12 Score=38.10 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=13.4
Q ss_pred hhhhhhhhcccccCCCCc
Q 004012 594 FTHNICHECCHGIGPHSI 611 (779)
Q Consensus 594 ~~~v~lHElgHg~G~~~~ 611 (779)
...|++||+||.+|-.+.
T Consensus 79 ~~~~i~HEl~HaLG~~HE 96 (191)
T PF01400_consen 79 SVGTILHELGHALGFWHE 96 (191)
T ss_dssp SHHHHHHHHHHHHTB--G
T ss_pred CccchHHHHHHHHhhhhh
Confidence 356899999999997543
No 134
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=33.01 E-value=17 Score=34.18 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.4
Q ss_pred hhhhhhhcccccCC
Q 004012 595 THNICHECCHGIGP 608 (779)
Q Consensus 595 ~~v~lHElgHg~G~ 608 (779)
.||++||+||--|-
T Consensus 110 thvliHEIgHhFGL 123 (136)
T COG3824 110 THVLIHEIGHHFGL 123 (136)
T ss_pred hhhhhhhhhhhcCC
Confidence 49999999998885
No 135
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=32.54 E-value=15 Score=37.84 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.6
Q ss_pred hhhhhhhcccccCCCC
Q 004012 595 THNICHECCHGIGPHS 610 (779)
Q Consensus 595 ~~v~lHElgHg~G~~~ 610 (779)
..|++|||||.+|-.+
T Consensus 88 ~Gti~HEl~HaLGf~H 103 (200)
T cd04281 88 FGIVVHELGHVIGFWH 103 (200)
T ss_pred CchHHHHHHHHhcCcc
Confidence 4799999999999744
No 136
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=32.24 E-value=21 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=13.7
Q ss_pred hhhhhhhcccccCCCCcc
Q 004012 595 THNICHECCHGIGPHSIT 612 (779)
Q Consensus 595 ~~v~lHElgHg~G~~~~~ 612 (779)
.-++-||+||++|..+..
T Consensus 140 qYvINHEVGH~LGh~H~~ 157 (203)
T PF11350_consen 140 QYVINHEVGHALGHGHEP 157 (203)
T ss_pred HHhhhhhhhhhcccCCCc
Confidence 356679999999985543
No 137
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=31.79 E-value=18 Score=36.58 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=13.1
Q ss_pred hhhhhhhhcccccCC
Q 004012 594 FTHNICHECCHGIGP 608 (779)
Q Consensus 594 ~~~v~lHElgHg~G~ 608 (779)
.+.|+.||+||-+|-
T Consensus 131 ~a~~~AHElGH~lG~ 145 (194)
T cd04269 131 FAVTMAHELGHNLGM 145 (194)
T ss_pred HHHHHHHHHHhhcCC
Confidence 468999999999996
No 138
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=31.45 E-value=15 Score=33.10 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=27.7
Q ss_pred hhhhhhhcccccCCCCcccCCCcccccchhhhhccchHHhHHHHHHHHHHH
Q 004012 595 THNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWAL 645 (779)
Q Consensus 595 ~~v~lHElgHg~G~~~~~~~~~~~~t~~~~~~~~~s~~EE~rAd~~glyl~ 645 (779)
..+++|||||-.=. .+. .+.............|.+|+.+|..++
T Consensus 43 ~f~laHELgH~~~~------~~~-~~~~~~~~~~~~~~~E~~An~fA~~lL 86 (122)
T PF06114_consen 43 RFTLAHELGHILLH------HGD-ETFNYYLNYFFNERQEREANAFAAALL 86 (122)
T ss_dssp HHHHHHHHHHHHHH------H-H-HHHHHHHHH--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh------hcc-ccchhhccccchhhHHHHHHHHHHHHh
Confidence 46889999998533 111 111223455567788999999988877
No 139
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=31.05 E-value=42 Score=25.29 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=12.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHh
Q 004012 73 AGHISAGDSSLISAQRELQEEL 94 (779)
Q Consensus 73 GG~ve~GEt~~eAAlREl~EEt 94 (779)
||-..+|--+..+++||+-||+
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 7777888888999999999996
No 140
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=30.07 E-value=15 Score=37.67 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.1
Q ss_pred hhhhhhhhcccccCC
Q 004012 594 FTHNICHECCHGIGP 608 (779)
Q Consensus 594 ~~~v~lHElgHg~G~ 608 (779)
.+.|+.|||||.+|-
T Consensus 140 ~a~~~aHElGH~LG~ 154 (207)
T cd04273 140 SAFTIAHELGHVLGM 154 (207)
T ss_pred eEEeeeeechhhcCC
Confidence 358899999999996
No 141
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=20 Score=36.81 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.3
Q ss_pred hhhhhhhhcccccCC
Q 004012 594 FTHNICHECCHGIGP 608 (779)
Q Consensus 594 ~~~v~lHElgHg~G~ 608 (779)
.++++.||+||.+|.
T Consensus 187 L~~tarhElGhaLgi 201 (236)
T COG5549 187 LNPTARHELGHALGI 201 (236)
T ss_pred hhHHHHHhhcchhee
Confidence 359999999999997
No 142
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=29.28 E-value=3.3e+02 Score=31.94 Aligned_cols=56 Identities=20% Similarity=0.102 Sum_probs=34.2
Q ss_pred hhhhhhhcccccCCCCcccCCCcccccchhhhh-ccchHHhHHHHHHHHHHH-HHHHh-CCCCChh
Q 004012 595 THNICHECCHGIGPHSITLPDGRQSTVRLELQE-LHSAMEEAKADIVGLWAL-KFLIG-RDLLPKS 657 (779)
Q Consensus 595 ~~v~lHElgHg~G~~~~~~~~~~~~t~~~~~~~-~~s~~EE~rAd~~glyl~-~~l~~-~g~~~~~ 657 (779)
+.|+.||+||--+-.. . .+-+ -.|.. -..++.|+=||+.+|=+. ++.+. .|+++..
T Consensus 248 ~~t~~HE~GH~~yy~~-y-~~~p-----~~~r~~anp~fheav~e~~smS~~tpe~L~~~~ll~~~ 306 (477)
T cd06461 248 FVTVHHEMGHIQYYLQ-Y-KDQP-----VLFREGANPGFHEAVGDAIALSVSTPKHLHKIGLLDSE 306 (477)
T ss_pred HHHHHHHHHHHHHHHH-h-ccCC-----HHHhCCCCCChHHHHHHHHHHhcCCHHHHhhccccccc
Confidence 4567799999975311 0 0111 12222 137788999999999765 55555 7887653
No 143
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=28.24 E-value=18 Score=38.02 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.0
Q ss_pred hhhhhhhhcccccCCCC
Q 004012 594 FTHNICHECCHGIGPHS 610 (779)
Q Consensus 594 ~~~v~lHElgHg~G~~~ 610 (779)
...|++|||||.+|-.+
T Consensus 120 ~~Gti~HEl~HalGf~H 136 (230)
T cd04282 120 YKATVEHEFLHALGFYH 136 (230)
T ss_pred CCchHHHHHHHHhCCcc
Confidence 35789999999999744
No 144
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=26.62 E-value=21 Score=32.46 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=20.5
Q ss_pred ccccccccChhhHhhhccccchhhhhhhhcccccCC
Q 004012 573 RPIADVCIRKEQQELVDFDSFFTHNICHECCHGIGP 608 (779)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~v~lHElgHg~G~ 608 (779)
.|+...|.+.+++.... -+|.+||+||-.|.
T Consensus 57 ~pl~~~~~~~~eL~~~I-----~~tlvhEiah~fG~ 87 (97)
T PF06262_consen 57 RPLERRARSREELAELI-----RDTLVHEIAHHFGI 87 (97)
T ss_dssp HHHHHT-SSHHHHHHHH-----HHHHHHHHHHHTT-
T ss_pred HHHHHHhCCHHHHHHHH-----HHHHHHHHHHHcCC
Confidence 34555677777754433 38999999999986
No 145
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=26.60 E-value=29 Score=39.01 Aligned_cols=49 Identities=31% Similarity=0.329 Sum_probs=36.4
Q ss_pred cchhhhhhhhcccccCCCCcccCCCcccccchhhhh-ccchHHhHHHHHHHHHHH
Q 004012 592 SFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQE-LHSAMEEAKADIVGLWAL 645 (779)
Q Consensus 592 ~~~~~v~lHElgHg~G~~~~~~~~~~~~t~~~~~~~-~~s~~EE~rAd~~glyl~ 645 (779)
+|...|++||.|||+-. .+.+|+.. .+.|.. .+.++=|+=-|.+||.+.
T Consensus 183 ~~D~~Ii~HEy~HGiSn---RLvgG~~~--s~cL~~~e~~~mGEGWsD~~Al~~~ 232 (378)
T PF02128_consen 183 DFDNGIIAHEYGHGISN---RLVGGPAN--SSCLQNLESGGMGEGWSDFFALMMT 232 (378)
T ss_pred ccccCeeEEeecccccc---cccCCCcc--cccccccccCCCcccHHHHHHHHhe
Confidence 77789999999999876 44465422 235554 378888999999998776
No 146
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=26.29 E-value=22 Score=37.07 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.7
Q ss_pred hhhhhhhhcccccCC
Q 004012 594 FTHNICHECCHGIGP 608 (779)
Q Consensus 594 ~~~v~lHElgHg~G~ 608 (779)
-+-|++||+||..=.
T Consensus 89 AvaVAAHEvGHAiQ~ 103 (222)
T PF04298_consen 89 AVAVAAHEVGHAIQH 103 (222)
T ss_pred HHHHHHHHHhHHHhc
Confidence 369999999999765
No 147
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=25.72 E-value=23 Score=36.65 Aligned_cols=18 Identities=6% Similarity=0.027 Sum_probs=14.4
Q ss_pred CCeeeeeeccccccccCc
Q 004012 452 DSELDVTIGPYETYEDAI 469 (779)
Q Consensus 452 ~~~ve~~iGfiEtY~Dp~ 469 (779)
+|.|.+++==||.+.++-
T Consensus 43 ~p~I~i~lv~i~i~~~~~ 60 (220)
T cd04272 43 SPRIRLLLVGITISKDPD 60 (220)
T ss_pred CCcEEEEEEEEEeccCcc
Confidence 688988888888888763
No 148
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=23.69 E-value=22 Score=37.32 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=14.7
Q ss_pred hhhhhhhhcccccCCCCcc
Q 004012 594 FTHNICHECCHGIGPHSIT 612 (779)
Q Consensus 594 ~~~v~lHElgHg~G~~~~~ 612 (779)
...|+.||+||-+|-.++.
T Consensus 137 ~g~t~~HEvGH~lGL~HtF 155 (225)
T cd04275 137 LGDTATHEVGHWLGLYHTF 155 (225)
T ss_pred ccceeEEeccceeeeeeee
Confidence 3478999999999965533
No 149
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=23.64 E-value=4e+02 Score=22.05 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhHHHHHHhhhccCCCcccc
Q 004012 719 ESLSTEILTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIA 768 (779)
Q Consensus 719 ~~ll~~l~~~k~~gD~~~~~~l~~~~~~v~~~~~~~l~~~~~~~~p~di~ 768 (779)
..+-.--..-|..||.+.|+.+.--.- .+..++.-.+ +|.|||+.
T Consensus 9 ~~yk~Aa~~AK~~gd~~kAr~~~R~~K----~~~~~I~~~~-aG~pVd~~ 53 (59)
T smart00685 9 EQYKQAALQAKRAGDEEKARRHLRIAK----QFDDAIKAAR-AGRPVDLS 53 (59)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh----hHHHHHHHHH-CCCCCChh
Confidence 334444455688999999999755443 3444554444 59999973
No 150
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=23.59 E-value=27 Score=35.47 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=12.4
Q ss_pred hhhhhhhhcccccCC
Q 004012 594 FTHNICHECCHGIGP 608 (779)
Q Consensus 594 ~~~v~lHElgHg~G~ 608 (779)
...+++||+||.+|-
T Consensus 131 ~a~~~AHelGH~lGm 145 (199)
T PF01421_consen 131 FAVIIAHELGHNLGM 145 (199)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCC
Confidence 458889999999996
No 151
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=22.63 E-value=34 Score=39.89 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.2
Q ss_pred chhhhhhhhcccccCCCCc
Q 004012 593 FFTHNICHECCHGIGPHSI 611 (779)
Q Consensus 593 ~~~~v~lHElgHg~G~~~~ 611 (779)
...+|+.||+||.+|-.+.
T Consensus 210 ~l~~Va~HEiGH~LGL~HS 228 (469)
T KOG1565|consen 210 DLFLVAAHEIGHALGLGHS 228 (469)
T ss_pred hhHHHhhhhcccccccCCC
Confidence 3459999999999996544
No 152
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=21.23 E-value=36 Score=37.59 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=12.8
Q ss_pred hhhhhhhcccccCCCC
Q 004012 595 THNICHECCHGIGPHS 610 (779)
Q Consensus 595 ~~v~lHElgHg~G~~~ 610 (779)
..|.+||+||..|-.|
T Consensus 151 ~~~~~HElgHN~GL~H 166 (314)
T PF05548_consen 151 WATIMHELGHNLGLWH 166 (314)
T ss_pred HHHHHHHhhhhccccc
Confidence 3489999999999643
Done!