BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004013
(779 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG + DE ++K +R+LAL HPDKN A GA AFK + A+++LS+ KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 126 YNE 128
Y++
Sbjct: 68 YDQ 70
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGA--FKLVSEAWSLLSDKA 121
E +Y +LG P D ++K +RK+AL HPDKN DGA FK +S+A+ +LSD+
Sbjct: 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN----PDGAEQFKQISQAYEVLSDEK 62
Query: 122 KRLAYNE 128
KR Y++
Sbjct: 63 KRQIYDQ 69
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAILG P D +T++ +R+LA HPD +K A+ FK ++EAW +L D+ +R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 126 YNEKLNPRGQQKYPAQPGV---SFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ R + Q S++ + I +S + R R A R
Sbjct: 89 YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAAR 139
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 126 YNEKLNPR 133
Y++ R
Sbjct: 66 YDQMWQHR 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 62 NGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKN--KAIGADGAFKLVSEAWSLLSD 119
+G ++Y +LG E ++K +RKLAL HPDKN A+ FKLVSEA+ +LSD
Sbjct: 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65
Query: 120 KAKRLAYN 127
KR Y+
Sbjct: 66 SKKRSLYD 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 67 WYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAY 126
+Y ILG + ++K F KLA+ HPDKNK+ A+ F+ ++EA+ LSD +R Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 127 N 127
+
Sbjct: 69 D 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y LG DE +++ +R+ AL HPDKNK GA+ FK ++EA+ +LSD KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 126 YN 127
++
Sbjct: 64 FD 65
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG-ADGAFKLVSEAWSLLSDKAKRL 124
D+Y ILG + ++ +RK +++LA+ HPD+N+ A+ FK + EA+ +L+D KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 AYNE 128
AY++
Sbjct: 64 AYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG-ADGAFKLVSEAWSLLSDKAKRL 124
D+Y ILG + ++ +RK +++LA+ HPD+N+ A+ FK + EA+ +L+D KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 AYNE 128
AY++
Sbjct: 64 AYDQ 67
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 62 NGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKN--KAIGADGAFKLVSEAWSLLSD 119
+G VD+Y +L E ++K +RKLAL HPDKN A+ FK V+EA+ +LSD
Sbjct: 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65
Query: 120 KAKRLAYN 127
KR Y+
Sbjct: 66 AKKRDIYD 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKR 123
E +Y +LG P E ++K +RKLAL HPDKN G FK +S+A+ +LSD KR
Sbjct: 5 ETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK--FKQISQAYEVLSDAKKR 62
Query: 124 LAYNE 128
Y++
Sbjct: 63 ELYDK 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG-ADGAFKLVSEAWSLLSDKAKRL 124
D+Y ILG + ++ +RK +++LA+ HPD+N+ A+ FK + EA+ +L+D KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 AYNE 128
AY++
Sbjct: 64 AYDQ 67
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 40 GLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNK 99
G GI Q L +D D Y +LG + ++K ++KLA HPDKNK
Sbjct: 4 GSSGILQSLSALDF------------DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK 51
Query: 100 AIGADGAFKLVSEAWSLLSDKAKRLAYN 127
GA+ F +S+A+ +LS++ KR Y+
Sbjct: 52 DPGAEDRFIQISKAYEILSNEEKRTNYD 79
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKR 123
E Y +LG +P +++ ++K +RK AL HPD K G FK +SEA+ +L+D KR
Sbjct: 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKR 64
Query: 124 LAYNE 128
Y++
Sbjct: 65 EIYDQ 69
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKN-KAIGADGAFKLVSEAWSLLSDKAKRL 124
++Y++LG + +R+ F+KLAL LHPDKN A G F ++ A+ +L D+ R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 125 AYNEKLNPRGQQKYPAQPGVSFASSGTN-GIHTSTKNATSQARARNDATRTSSTTQAGVS 183
Y +K +G + S++ + GI+ + R DA S V+
Sbjct: 63 KY-DKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWF-VN 120
Query: 184 FASPSANGIH 193
F SP + H
Sbjct: 121 FYSPGCSHCH 130
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 57 AEKKVNGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSL 116
A +++ D + +LG P + V K +RKLA+ LHPDK A G++ AFK V A +
Sbjct: 19 AIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTA 78
Query: 117 L 117
L
Sbjct: 79 L 79
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKN-KAIGADGAFKLVSEAWSLLSDKAKRL 124
++Y++LG + +R+ F+KLAL LHPDKN A G F ++ A+ +L D+ R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 125 AYNE 128
Y++
Sbjct: 82 KYDK 85
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 67 WYAILGTNPWVDDETVRKQFRKLALSLHPDKN--KAIGADGAFKLVSEAWSLLSDKAKRL 124
+Y IL + ++K +R+ AL HPDKN A+ FK V+EA+ +LSDK KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 125 AYNEKLNPRGQQKYPAQPGVSFASSGTNGI 154
Y+ + G P + A SG G+
Sbjct: 64 IYD-RYGREGLTGTGTGPSRAEAGSGGPGL 92
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 67 WYAILGTNPWVDDETVRKQFRKLALSLHPDKN-KAIGADGAFKLVSEAWSLLSDKAKRLA 125
Y +LG + + ++K +RKLAL HPDKN A FK ++ A ++L+D KR
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 126 YNE 128
Y++
Sbjct: 79 YDK 81
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNK-AIGADGAFKLVSEAWSLLSDKAKRL 124
D+Y ILG + ++K + +LA HPD NK A F ++EA+ +LSD+ KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 125 AYN 127
Y+
Sbjct: 68 QYD 70
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGA-------FKLVSEAWSLLS 118
DWY+ILG +P + ++++++KL L HPDK G F + +AW +L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 119 DKAKRLAYN 127
++ + Y+
Sbjct: 71 NEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGA-------FKLVSEAWSLLS 118
DWY+ILG +P + ++++++KL L HPDK A G F + +AW +L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 119 DKAKRLAYN 127
++ + Y+
Sbjct: 77 NEETKKKYD 85
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 22 KNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDET 81
++Y A++ Q + GLE ++L K + + D+Y ILG +
Sbjct: 350 QDYETAQEHNENDQQIREGLEKAQRLL-----------KQSQKRDYYKILGVKRNAKKQE 398
Query: 82 VRKQFRKLALSLHPD 96
+ K +RKLAL HPD
Sbjct: 399 IIKAYRKLALQWHPD 413
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 22 KNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDET 81
++Y A++ Q + GLE ++L K + + D+Y ILG +
Sbjct: 350 QDYETAQEHNENDQQIREGLEKAQRLL-----------KQSQKRDYYKILGVKRNAKKQE 398
Query: 82 VRKQFRKLALSLHPD 96
+ K +RKLAL HPD
Sbjct: 399 IIKAYRKLALQWHPD 413
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKN----KAIGADGAFKLVSEAWSLLSDKA 121
D+Y +LG + E + +F+ AL HPDK+ KA+ F+ + +A +L+++
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAV---ETFQKLQKAKEILTNEE 77
Query: 122 KRLAYN 127
R Y+
Sbjct: 78 SRARYD 83
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 63 GEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG------ADGAFKLVSEAWSL 116
GE W + G V E V+K +RK L +HPD KA G A F +++AWS
Sbjct: 35 GETKWKPV-GXADLVTPEQVKKVYRKAVLVVHPD--KATGQPYEQYAKXIFXELNDAWSE 91
Query: 117 LSDKAKRLAY 126
++ ++ Y
Sbjct: 92 FENQGQKPLY 101
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 44 ISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG- 102
I +L T+ + A GE W + G V E V+K +RK L +HPD KA G
Sbjct: 102 IRALLSTMHTVLWA-----GETKWKPV-GMADLVTPEQVKKVYRKAVLVVHPD--KATGQ 153
Query: 103 -----ADGAFKLVSEAWSLLSDKAKR 123
A F +++AWS ++ ++
Sbjct: 154 PYEQYAKMIFMELNDAWSEFENQGQK 179
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 63 GEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG------ADGAFKLVSEAWSL 116
GE W + G V E V+K +RK L +HPD KA G A F +++AWS
Sbjct: 48 GETKWKPV-GMADLVTPEQVKKVYRKAVLVVHPD--KATGQPYEQYAKMIFMELNDAWSE 104
Query: 117 LSDKAKRLAY 126
++ ++ Y
Sbjct: 105 FENQGQKPLY 114
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 77 VDDETVRKQFRKLALSLHPDKNKAIG--------ADGAFKLVSEAW 114
++ VRK +++ L LHPDK + G A+ F+L+ EAW
Sbjct: 52 IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,260,783
Number of Sequences: 62578
Number of extensions: 832130
Number of successful extensions: 1510
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 31
length of query: 779
length of database: 14,973,337
effective HSP length: 106
effective length of query: 673
effective length of database: 8,340,069
effective search space: 5612866437
effective search space used: 5612866437
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)