BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004013
(779 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QYI4|DJB12_MOUSE DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2
SV=2
Length = 376
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 76/173 (43%), Gaps = 45/173 (26%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPG------LEGISQMLMTIDVY 54
ME NKDEA R IA + + A +F KAQ LYP +E ++Q + +
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVSALIESLNQKPQSTGDH 60
Query: 55 ---------------------------------------IAAEKKVNGEVDWYAILGTNP 75
+AA K+V D+Y ILG +
Sbjct: 61 PQPTDTTHTTTKKAGGTETPSANGEAGGGESAKGYTSEQVAAVKRVKQCKDYYEILGVSR 120
Query: 76 WVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNE 128
DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KR Y++
Sbjct: 121 SASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 173
>sp|Q9NXW2|DJB12_HUMAN DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1
SV=4
Length = 375
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 44/172 (25%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPG------LEGISQMLMTID-- 52
ME NKDEA R IA + + A +F KAQ LYP +E ++Q T
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVRALIESLNQKPQTAGDQ 60
Query: 53 ------------------------------------VYIAAEKKVNGEVDWYAILGTNPW 76
+AA K+V D+Y ILG +
Sbjct: 61 PPPTDTTHATHRKAGGTDAPSANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRG 120
Query: 77 VDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNE 128
DE ++K +R+LAL HPDKN A GA AFK + A+++LS+ KR Y++
Sbjct: 121 ASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 172
>sp|Q58DR2|DJB12_BOVIN DnaJ homolog subfamily B member 12 OS=Bos taurus GN=DNAJB12 PE=2
SV=1
Length = 370
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 79/179 (44%), Gaps = 44/179 (24%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLY--PGLEGISQML---------- 48
ME NKDEA R IA + + A +F KAQ LY P + + + L
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVHALIESLNQKPQPAGDQ 60
Query: 49 ----------------------------MTIDVY----IAAEKKVNGEVDWYAILGTNPW 76
+ Y +AA K+V D+Y ILG +
Sbjct: 61 PQPTEATHTTHRKAAGANTASANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRG 120
Query: 77 VDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQ 135
DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KR Y++ + +GQ
Sbjct: 121 ASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKGQ 179
>sp|Q149L6|DJB14_MOUSE DnaJ homolog subfamily B member 14 OS=Mus musculus GN=Dnajb14 PE=2
SV=1
Length = 379
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 42/169 (24%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYP--------------------- 39
ME N+DEA + +IA L+ N A++F KA+ LYP
Sbjct: 1 MEGNRDEAEKCVQIAREALSAGNRDKAQRFLQKAEKLYPLPAARALLEIIMKNGSTAGSS 60
Query: 40 -----------------GLEGISQMLMTIDVY----IAAEKKVNGEVDWYAILGTNPWVD 78
G +G S VY + +N ++Y +LG
Sbjct: 61 THCRKPPGSSDQSKPSCGKDGTSGAGEGGKVYTKDQVEGVLSINKCKNYYEVLGVTKDAG 120
Query: 79 DETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYN 127
DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KR Y+
Sbjct: 121 DEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD 169
>sp|P0CW06|DNAJ_METMZ Chaperone protein DnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1
Length = 389
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 10/250 (4%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG + E ++K +RKLAL HPD+NK GA+ FK +SEA+++LSD KR
Sbjct: 6 DYYEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQ 65
Query: 126 YNEKLNPRGQQKYPAQPGVSFASSGTNG-IHTSTKNATSQARARNDATRTSSTTQAGVSF 184
Y+ + +Y A+ A G G I + + V+F
Sbjct: 66 YDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYVTF 125
Query: 185 ASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQNPGTFWTICNKCRTQYEYLRIY 244
+A G+ + ++ + + TG + P N G + RT L +
Sbjct: 126 EE-AAFGVRKDIDIPRTERCSTCSGTGAKPGTSPKRCPNCGGTGQV----RTTRSTLGMQ 180
Query: 245 LNNTLLCPNCHEAFLAVEKPPPSNAFKSLNSSSRQQHQNSRPHSANS--NLYKSG-GSAG 301
+T C CH VE P P+ + S R+ N P A+S L SG G AG
Sbjct: 181 FVSTTTCSACHGRGQVVESPCPTCSGAGRVRSRRKMSVNV-PAGADSGMTLRLSGEGDAG 239
Query: 302 LYSSNSKNLH 311
+ S +L+
Sbjct: 240 EPGAPSGDLY 249
>sp|P0CW07|DNAJ_METMA Chaperone protein DnaJ OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=dnaJ
PE=3 SV=1
Length = 389
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 10/250 (4%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG + E ++K +RKLAL HPD+NK GA+ FK +SEA+++LSD KR
Sbjct: 6 DYYEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQ 65
Query: 126 YNEKLNPRGQQKYPAQPGVSFASSGTNG-IHTSTKNATSQARARNDATRTSSTTQAGVSF 184
Y+ + +Y A+ A G G I + + V+F
Sbjct: 66 YDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYVTF 125
Query: 185 ASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQNPGTFWTICNKCRTQYEYLRIY 244
+A G+ + ++ + + TG + P N G + RT L +
Sbjct: 126 EE-AAFGVRKDIDIPRTERCSTCSGTGAKPGTSPKRCPNCGGTGQV----RTTRSTLGMQ 180
Query: 245 LNNTLLCPNCHEAFLAVEKPPPSNAFKSLNSSSRQQHQNSRPHSANS--NLYKSG-GSAG 301
+T C CH VE P P+ + S R+ N P A+S L SG G AG
Sbjct: 181 FVSTTTCSACHGRGQVVESPCPTCSGAGRVRSRRKMSVNV-PAGADSGMTLRLSGEGDAG 239
Query: 302 LYSSNSKNLH 311
+ S +L+
Sbjct: 240 EPGAPSGDLY 249
>sp|Q9FH28|DNJ49_ARATH Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2
SV=2
Length = 354
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 33/161 (20%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLE------------------ 42
M+ NKD+A+R IAE + + A KF A+ L P L
Sbjct: 1 MDGNKDDASRCLRIAEDAIVSGDKERALKFINMAKRLNPSLSVDELVAACDNLDSVSRNS 60
Query: 43 GISQMLMTID---------------VYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQFR 87
+S+ L T+D + + + D+YAILG + +RK +R
Sbjct: 61 SVSEKLKTMDGDDDKLETGKMKYTEENVDLVRNIIRNNDYYAILGLEKNCSVDEIRKAYR 120
Query: 88 KLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNE 128
KL+L +HPDKNKA G++ AFK VS+A++ LSD R +++
Sbjct: 121 KLSLKVHPDKNKAPGSEEAFKKVSKAFTCLSDGNSRRQFDQ 161
>sp|Q8TBM8|DJB14_HUMAN DnaJ homolog subfamily B member 14 OS=Homo sapiens GN=DNAJB14 PE=2
SV=1
Length = 379
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 50/173 (28%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYP--GLEGISQMLM--------- 49
ME N+DEA + EIA L N A++F KA+ LYP + +++M
Sbjct: 1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYPLPSARALLEIIMKNGSTAGNS 60
Query: 50 -----------------------------------TIDVYIAAEKKVNGEVDWYAILGTN 74
+D ++ K N +Y +LG
Sbjct: 61 PHCRKPSGSGDQSKPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKN----YYEVLGVT 116
Query: 75 PWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYN 127
DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KR Y+
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD 169
>sp|Q0IIE8|DJB14_BOVIN DnaJ homolog subfamily B member 14 OS=Bos taurus GN=DNAJB14 PE=2
SV=1
Length = 379
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 42/169 (24%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYP--GLEGISQMLM--------- 49
ME N+DEA + EIA L N A++F KA+ LYP + +++M
Sbjct: 1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYPLPSARALLEIIMKNGSTAGNS 60
Query: 50 -----------------TIDVYIA--------AEKKVNGEV------DWYAILGTNPWVD 78
T D + +V+G + ++Y +LG
Sbjct: 61 PHCRKPSGGGDQSKPNCTKDSSSGSGESGKGYTKDQVDGVLSINKCKNYYEVLGVTKDAG 120
Query: 79 DETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYN 127
DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KR Y+
Sbjct: 121 DEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD 169
>sp|Q7ZXQ8|DJB14_XENLA DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14
PE=2 SV=1
Length = 371
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 36/163 (22%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEG----------------- 43
ME N+DEA R I + + + A++F KA+ LYP E
Sbjct: 1 MESNRDEAERCVRIGKAAIEAGDKEKARRFFSKAERLYPSSEARVLLDALEKNDTAGNGP 60
Query: 44 ISQMLMTIDVYIAAEKKVNG---------EVD----------WYAILGTNPWVDDETVRK 84
S+ + AEK +G +VD +Y +LG +P +E ++K
Sbjct: 61 QSEKMSKSTEQPKAEKDSSGDTGKGHTQDQVDGVQRIKKCKTYYEVLGVSPDAGEEDLKK 120
Query: 85 QFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYN 127
+RKLAL HPDKN A GA AFK + A+++LS+ KR Y+
Sbjct: 121 AYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYD 163
>sp|B3WEQ6|DNAJ_LACCB Chaperone protein DnaJ OS=Lactobacillus casei (strain BL23) GN=dnaJ
PE=3 SV=1
Length = 387
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y LG + DD+T+RK FRKL+ HPD N A GA+ FK ++EA+ +LSD KR A
Sbjct: 6 DYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSDPQKRAA 65
Query: 126 YNE 128
Y++
Sbjct: 66 YDQ 68
>sp|Q038N5|DNAJ_LACC3 Chaperone protein DnaJ OS=Lactobacillus casei (strain ATCC 334)
GN=dnaJ PE=3 SV=1
Length = 387
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y LG + DD+T+RK FRKL+ HPD N A GA+ FK ++EA+ +LSD KR A
Sbjct: 6 DYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSDPQKRAA 65
Query: 126 YNE 128
Y++
Sbjct: 66 YDQ 68
>sp|Q5R6H3|DJB14_PONAB DnaJ homolog subfamily B member 14 OS=Pongo abelii GN=DNAJB14 PE=2
SV=1
Length = 379
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 50/173 (28%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYP--GLEGISQMLM--------- 49
ME N+DEA + EIA L N A++F KA+ LYP + +++M
Sbjct: 1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYPLPSARALLEIIMKNGSTAGNS 60
Query: 50 -----------------------------------TIDVYIAAEKKVNGEVDWYAILGTN 74
+D ++ K N Y +LG
Sbjct: 61 PHCRKPSGSGDQSKPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKN----CYEVLGVT 116
Query: 75 PWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYN 127
DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KR Y+
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD 169
>sp|Q8TQR1|DNAJ_METAC Chaperone protein DnaJ OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=dnaJ PE=3 SV=1
Length = 382
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 20/209 (9%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG E ++K +RKLAL HPD+NK GA+ FK +SEA+++LSD KR
Sbjct: 6 DYYEILGLPKDASVEDIKKTYRKLALQYHPDRNKDPGAEDKFKEISEAYAVLSDTEKRAQ 65
Query: 126 YNEKLNPRGQQKYPAQPGVSFASSGTNG-IHTSTKNATSQARARNDATRTSSTTQAGVSF 184
Y+ + +Y A+ A G G I + + ++F
Sbjct: 66 YDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYITF 125
Query: 185 ASPSANGIHRFTKNV-TSQTKARNNATGTSSTSVPSSNQNPGTFWTICNKC------RTQ 237
+A G+ K++ +T+ + +GT + PGT C C RT
Sbjct: 126 EE-AAFGVR---KDIDIPRTERCSTCSGTGA--------KPGTSPKRCPTCGGTGQVRTT 173
Query: 238 YEYLRIYLNNTLLCPNCHEAFLAVEKPPP 266
L + +T C CH +E P P
Sbjct: 174 RSTLGMQFISTTTCSTCHGRGQIIESPCP 202
>sp|Q9LCQ4|DNAJ_BRECH Chaperone protein DnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3
SV=1
Length = 375
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 70/173 (40%), Gaps = 18/173 (10%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y +LG D + ++K +RKLA HPD NKA A+ FK V EA+ +LS+ KR
Sbjct: 4 DYYEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEEKFKEVKEAYDVLSEPQKRAQ 63
Query: 126 YNEKLNPRGQQKYPAQ--PGVSFASSGTNGIHT--STKNATSQARARNDATRTSSTTQAG 181
Y+ R + P Q G F +SG G RA +A R S Q G
Sbjct: 64 YD-----RFGHQDPNQGFGGGGFDASGMGGFGDIFDMFFGGGGRRANPNAPRKGSDLQFG 118
Query: 182 VSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQNPGTFWTICNKC 234
+S FT+ V + + S PGT C C
Sbjct: 119 LSI---------EFTETVFGKETDVEIPKEAECDTCHGSGAKPGTGVETCKTC 162
>sp|Q28I38|DJB14_XENTR DnaJ homolog subfamily B member 14 OS=Xenopus tropicalis GN=dnajb14
PE=2 SV=1
Length = 375
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 40/167 (23%)
Query: 1 MECNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEG--ISQMLMTIDV----- 53
ME N+DEA R IA+ + + AK+F KA+ LYP E + Q D
Sbjct: 1 MESNRDEAERCVRIAKAAIEAGDKEKAKRFLSKAERLYPSSEARALLQAFEKNDTAGNGP 60
Query: 54 ----------YIAAEKKVNG-------------EVD----------WYAILGTNPWVDDE 80
AEK N ++D +Y +LG + +E
Sbjct: 61 QSAKMAKGTEQPKAEKDSNASASSDTGKGHTQDQLDGVQRIKKCKTYYEVLGVSTDAGEE 120
Query: 81 TVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYN 127
++K +RKLAL HPDKN A GA AFK + A+++LS+ KR Y+
Sbjct: 121 DLKKAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYD 167
>sp|Q9UXR9|DNAJ_METTE Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3
SV=1
Length = 387
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG + E ++K +RKLAL HPD+NK GA+ FK +SEA+++LSD KR
Sbjct: 6 DYYEILGLSRDATPEDIKKSYRKLALKYHPDRNKEPGAEEKFKEISEAYAVLSDPEKRAQ 65
Query: 126 YNEKLNPRGQQKYPAQPGVSFASSGTNGIHTS 157
Y+ F +G NG +T+
Sbjct: 66 YDR-----------------FGHAGINGQYTA 80
>sp|Q5EA26|DJC18_BOVIN DnaJ homolog subfamily C member 18 OS=Bos taurus GN=DNAJC18 PE=2
SV=1
Length = 358
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
++Y ILG + DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KRL
Sbjct: 82 NYYEILGVSRDASDEELKKAYRKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLR 141
Query: 126 YNE 128
Y+E
Sbjct: 142 YDE 144
>sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1
SV=1
Length = 337
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG DE ++K +RK AL HPDKNK+ A+ FK V+EA+ +LSD KR
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREI 63
Query: 126 YNE 128
Y++
Sbjct: 64 YDQ 66
>sp|Q95KD5|DJC18_MACFA DnaJ homolog subfamily C member 18 OS=Macaca fascicularis
GN=DNAJC18 PE=2 SV=1
Length = 358
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
++Y ILG + DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KRL
Sbjct: 82 NYYEILGVSRDASDEELKKAYRKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLR 141
Query: 126 YNE 128
Y+E
Sbjct: 142 YDE 144
>sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2
SV=1
Length = 337
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG DE ++K +RK AL HPDKNK+ A+ FK V+EA+ +LSD KR
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREI 63
Query: 126 YNE 128
Y++
Sbjct: 64 YDQ 66
>sp|Q9H819|DJC18_HUMAN DnaJ homolog subfamily C member 18 OS=Homo sapiens GN=DNAJC18 PE=2
SV=1
Length = 358
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
++Y ILG + DE ++K +RKLAL HPDKN A GA AFK + A+++LS+ KRL
Sbjct: 82 NYYEILGVSRDASDEELKKAYRKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLR 141
Query: 126 YNE 128
Y+E
Sbjct: 142 YDE 144
>sp|Q9D832|DNJB4_MOUSE DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2
SV=1
Length = 337
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG + DE V+K +RK AL HPDKNK+ A+ FK V+EA+ +LSD KR
Sbjct: 4 DYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREI 63
Query: 126 YNE 128
Y++
Sbjct: 64 YDQ 66
>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=dnaJ PE=3 SV=1
Length = 373
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y +LG N + ++K +RKL+ HPD NK GAD FK +SEA+ +LSD+ KR+
Sbjct: 5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVN 64
Query: 126 YNE 128
Y++
Sbjct: 65 YDQ 67
>sp|Q2KIT4|DNJB4_BOVIN DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1
Length = 337
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG DE ++K +RK AL HPDKNK+ A+ FK V+EA+ +LSD KR
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALRFHPDKNKSPQAEERFKEVAEAYEVLSDPKKREI 63
Query: 126 YNE 128
Y++
Sbjct: 64 YDQ 66
>sp|A8AI78|CBPA_CITK8 Curved DNA-binding protein OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=cbpA PE=3 SV=1
Length = 306
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G S+ + + I +S Q + ATR
Sbjct: 65 YDQLWQHRNDPQFNRQFQQGEGQSYNAEDFDDIFSSIFGQHGQQSRQRQATR 116
>sp|Q8CP18|DNAJ_STAES Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=dnaJ PE=3 SV=1
Length = 373
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y +LG N + ++K +RKL+ HPD NK GAD FK +SEA+ +LSD+ KR
Sbjct: 5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRAN 64
Query: 126 YNE 128
Y++
Sbjct: 65 YDQ 67
>sp|Q9ZFC5|DNAJ_METSS Chaperone protein DnaJ OS=Methylovorus sp. (strain SS1 / DSM 11726)
GN=dnaJ PE=3 SV=1
Length = 371
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 32/215 (14%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRL 124
D+Y +LG N DE ++K +RKLA+ HPD+N A+ +FK EA+ +LSD+ KR
Sbjct: 5 DYYEVLGVNRDASDEEIKKSYRKLAMKYHPDRNPDNPKAEESFKEAKEAYEVLSDEQKRA 64
Query: 125 AYNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQA 180
AY++ ++P A PG G + + R S+ +
Sbjct: 65 AYDQYGHAGVDPS------AGPG---PRQGFGNFADAFGDIFGDIFGGGGGNRRSNVYR- 114
Query: 181 GVSFASPSANGIHRFTKNVTSQTKARNNATG------TSSTSVPSSNQNPGTFWTICNKC 234
G R+ ++ + AR T + + S PGT C C
Sbjct: 115 GADL---------RYNMEISLEDAARRTETKIRIPVMSECETCHGSGARPGTQPVTCTTC 165
Query: 235 --RTQYEYLRIYLNNTLLCPNCHEAFLAVEKPPPS 267
Q + + + CP CH + V++P PS
Sbjct: 166 GGHGQVRMQQGFFSVQQTCPKCHGSGKMVKEPCPS 200
>sp|B1LJ04|CBPA_ECOSM Curved DNA-binding protein OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 26/193 (13%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR-------- 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSHQRPATRGHDIEIEV 124
Query: 174 ------TSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSV-------PSS 220
T + + +S+ P N + + K + A + + P
Sbjct: 125 AVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLKVKIPAGVGNGQRIRLKGQGTPGE 184
Query: 221 NQNP-GTFWTICN 232
N P G W + +
Sbjct: 185 NGGPNGDLWLVIH 197
>sp|Q87VN8|CBPA_PSESM Curved DNA-binding protein OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=cbpA PE=3 SV=1
Length = 314
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y IL P DD+ ++ +RKLA HPD +K GA+ FK SEA+ +LS KR
Sbjct: 5 DYYKILDVEPAADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPEKRAE 64
Query: 126 YNEKLNPRGQQKYPAQ--PG-VSFASSGTNGIHTS 157
Y+E L G+Q P Q PG S A +G G +
Sbjct: 65 YDE-LRKYGRQGRPFQTPPGWQSRAGAGAGGFEET 98
>sp|B7LFA9|CBPA_ECO55 Curved DNA-binding protein OS=Escherichia coli (strain 55989 /
EAEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHSDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|B7NLC5|CBPA_ECO7I Curved DNA-binding protein OS=Escherichia coli O7:K1 (strain IAI39
/ ExPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|B7N3F5|CBPA_ECOLU Curved DNA-binding protein OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|Q1RDL6|CBPA_ECOUT Curved DNA-binding protein OS=Escherichia coli (strain UTI89 /
UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|Q8FJ50|CBPA_ECOL6 Curved DNA-binding protein OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|Q0TJ66|CBPA_ECOL5 Curved DNA-binding protein OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|A1A9Q7|CBPA_ECOK1 Curved DNA-binding protein OS=Escherichia coli O1:K1 / APEC GN=cbpA
PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|B7MPT2|CBPA_ECO81 Curved DNA-binding protein OS=Escherichia coli O81 (strain ED1a)
GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|B7MIE6|CBPA_ECO45 Curved DNA-binding protein OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|B7UNY3|CBPA_ECO27 Curved DNA-binding protein OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|P36659|CBPA_ECOLI Curved DNA-binding protein OS=Escherichia coli (strain K12) GN=cbpA
PE=1 SV=2
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|B1IV97|CBPA_ECOLC Curved DNA-binding protein OS=Escherichia coli (strain ATCC 8739 /
DSM 1576 / Crooks) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|A7ZYV2|CBPA_ECOHS Curved DNA-binding protein OS=Escherichia coli O9:H4 (strain HS)
GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|B1X8V5|CBPA_ECODH Curved DNA-binding protein OS=Escherichia coli (strain K12 / DH10B)
GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|C4ZQC8|CBPA_ECOBW Curved DNA-binding protein OS=Escherichia coli (strain K12 / MC4100
/ BW2952) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATR 116
>sp|Q9RUG2|DNAJ_DEIRA Chaperone protein DnaJ OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=dnaJ PE=3 SV=2
Length = 376
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRL 124
+D+Y +LG + + ++ +RKLAL LHPD+NK GA F VSEA+S+LSD KR
Sbjct: 1 MDYYELLGVSRTASADEIKSAYRKLALKLHPDRNKEEGAAEKFAQVSEAYSVLSDTEKRA 60
Query: 125 AYN 127
Y+
Sbjct: 61 HYD 63
>sp|B7LP19|CBPA_ESCF3 Curved DNA-binding protein OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=cbpA PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+YAI+G P D +T++ +R+LA HPD +K A+ FK V+EAW +LSD+ +R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YNE----KLNPRGQQKYPAQPGVSFASSGTNGIHTSTKNATSQARARNDATR 173
Y++ + +P+ +++ G SF + + I +S ++ + ATR
Sbjct: 65 YDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQARQRPATR 116
>sp|Q757X4|JJJ2_ASHGO J protein JJJ2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=JJJ2 PE=3 SV=1
Length = 535
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKR 123
E +Y++LG + +RK + +LA LHPDK+K+ A FK+V+ A S+L+DK KR
Sbjct: 10 ETTYYSLLGLPFGASELHIRKAYMRLARELHPDKSKSKEAAELFKVVAHAHSVLTDKEKR 69
Query: 124 LAYNEKLNPRGQQKYPAQPGVSFASSGTN 152
L Y+ +L +G Y VS +SS N
Sbjct: 70 LKYDRQLIAKGLHTY-----VSNSSSSLN 93
>sp|Q24133|DNAJ1_DROME DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1
SV=3
Length = 334
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y ILG D+ ++K +RKLAL HPDKNK+ A+ FK ++EA+ +LSDK KR
Sbjct: 4 DFYKILGLERKASDDEIKKAYRKLALKYHPDKNKSPQAEERFKEIAEAYEVLSDKKKRDI 63
Query: 126 YN 127
++
Sbjct: 64 FD 65
>sp|A0AIS3|DNAJ_LISW6 Chaperone protein DnaJ OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1
Length = 376
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLA 125
D+Y +LG + + ++K +RKL+ HPD NK GAD FK +SEA+ +LSD KR
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEVLSDSQKRAQ 64
Query: 126 YNE 128
Y++
Sbjct: 65 YDQ 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,488,358
Number of Sequences: 539616
Number of extensions: 13161245
Number of successful extensions: 57448
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 507
Number of HSP's that attempted gapping in prelim test: 49320
Number of HSP's gapped (non-prelim): 6252
length of query: 779
length of database: 191,569,459
effective HSP length: 125
effective length of query: 654
effective length of database: 124,117,459
effective search space: 81172818186
effective search space used: 81172818186
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)