Query 004014
Match_columns 779
No_of_seqs 432 out of 2562
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11926 DUF3444: Domain of un 100.0 2.5E-83 5.3E-88 654.7 22.7 213 502-715 3-217 (217)
2 COG0484 DnaJ DnaJ-class molecu 100.0 7.6E-29 1.6E-33 269.7 10.8 149 64-258 3-152 (371)
3 PRK14288 chaperone protein Dna 99.9 7.1E-24 1.5E-28 234.4 12.7 139 64-245 2-142 (369)
4 PRK14296 chaperone protein Dna 99.9 2.1E-23 4.5E-28 230.9 11.4 155 64-257 3-158 (372)
5 KOG0712 Molecular chaperone (D 99.9 1.1E-23 2.4E-28 226.7 8.2 134 64-257 3-136 (337)
6 PRK14279 chaperone protein Dna 99.9 3.2E-23 7E-28 230.8 10.5 171 64-258 8-183 (392)
7 PRK14286 chaperone protein Dna 99.9 4.7E-23 1E-27 228.1 10.4 155 64-257 3-159 (372)
8 PRK14291 chaperone protein Dna 99.9 1.1E-22 2.3E-27 226.0 12.7 156 64-245 2-158 (382)
9 PRK14276 chaperone protein Dna 99.9 6.3E-23 1.4E-27 227.7 10.8 154 64-258 3-156 (380)
10 PRK14298 chaperone protein Dna 99.9 1.1E-22 2.5E-27 225.4 11.8 140 64-245 4-143 (377)
11 PRK14287 chaperone protein Dna 99.9 1.3E-22 2.8E-27 224.5 10.5 145 64-257 3-147 (371)
12 PRK14285 chaperone protein Dna 99.9 2.2E-22 4.7E-27 222.3 12.1 144 65-245 3-148 (365)
13 PRK14277 chaperone protein Dna 99.9 2.2E-22 4.8E-27 223.7 11.5 161 64-258 4-165 (386)
14 PRK14284 chaperone protein Dna 99.9 2.9E-22 6.3E-27 223.2 11.5 165 65-258 1-168 (391)
15 PRK14283 chaperone protein Dna 99.9 2.9E-22 6.2E-27 222.3 11.0 153 64-258 4-156 (378)
16 PRK14282 chaperone protein Dna 99.9 4.4E-22 9.6E-27 220.2 12.1 150 64-245 3-154 (369)
17 PRK14280 chaperone protein Dna 99.9 3.4E-22 7.4E-27 221.6 10.6 149 65-258 4-153 (376)
18 PRK14297 chaperone protein Dna 99.9 3.6E-22 7.8E-27 221.7 9.6 152 65-258 4-158 (380)
19 PRK14294 chaperone protein Dna 99.9 1.3E-21 2.9E-26 216.2 11.7 143 64-245 3-146 (366)
20 KOG0713 Molecular chaperone (D 99.9 4.4E-22 9.6E-27 212.3 7.2 73 62-134 13-86 (336)
21 PRK14278 chaperone protein Dna 99.9 1E-21 2.2E-26 218.0 9.7 145 65-257 3-148 (378)
22 PTZ00037 DnaJ_C chaperone prot 99.9 8.6E-22 1.9E-26 220.7 8.8 134 64-258 27-160 (421)
23 TIGR02349 DnaJ_bact chaperone 99.8 1.7E-21 3.7E-26 214.4 10.5 151 66-258 1-153 (354)
24 PRK14299 chaperone protein Dna 99.8 3.3E-21 7.2E-26 206.9 12.5 163 64-266 3-165 (291)
25 PRK14301 chaperone protein Dna 99.8 9.9E-22 2.1E-26 217.7 8.6 149 64-257 3-153 (373)
26 PRK14295 chaperone protein Dna 99.8 2.7E-21 5.9E-26 215.2 10.9 160 64-257 8-175 (389)
27 PRK14281 chaperone protein Dna 99.8 3.8E-21 8.3E-26 214.6 10.2 170 65-258 3-173 (397)
28 PRK10767 chaperone protein Dna 99.8 4.7E-21 1E-25 212.2 10.4 147 64-257 3-151 (371)
29 PRK14290 chaperone protein Dna 99.8 1.2E-20 2.6E-25 208.6 10.7 155 65-258 3-159 (365)
30 PRK14300 chaperone protein Dna 99.8 1.7E-20 3.8E-25 207.7 10.6 153 65-258 3-155 (372)
31 PRK14292 chaperone protein Dna 99.8 2E-20 4.3E-25 207.2 10.5 148 65-258 2-149 (371)
32 PRK14293 chaperone protein Dna 99.8 4.6E-20 9.9E-25 204.6 10.2 150 65-257 3-152 (374)
33 PRK10266 curved DNA-binding pr 99.8 1.3E-19 2.8E-24 196.0 11.5 164 65-267 4-168 (306)
34 PRK14289 chaperone protein Dna 99.8 1E-19 2.3E-24 202.5 10.5 71 64-134 4-75 (386)
35 KOG0624 dsRNA-activated protei 99.8 7.4E-19 1.6E-23 187.2 14.1 126 5-134 338-467 (504)
36 KOG0715 Molecular chaperone (D 99.7 6.4E-17 1.4E-21 173.5 8.5 132 65-258 43-174 (288)
37 KOG0550 Molecular chaperone (D 99.6 9.2E-16 2E-20 167.2 10.9 118 11-133 324-443 (486)
38 PF00226 DnaJ: DnaJ domain; I 99.6 1.2E-15 2.6E-20 127.5 5.8 62 66-127 1-64 (64)
39 KOG0716 Molecular chaperone (D 99.6 1.7E-15 3.7E-20 157.7 5.4 71 64-134 30-101 (279)
40 KOG0691 Molecular chaperone (D 99.6 3.4E-15 7.3E-20 159.8 6.3 71 64-134 4-75 (296)
41 KOG0717 Molecular chaperone (D 99.5 3E-15 6.5E-20 164.6 4.9 72 63-134 6-79 (508)
42 KOG0718 Molecular chaperone (D 99.5 4.4E-15 9.6E-20 163.2 6.0 71 64-134 8-82 (546)
43 PTZ00341 Ring-infected erythro 99.5 7.7E-15 1.7E-19 173.2 7.5 72 63-134 571-642 (1136)
44 KOG0714 Molecular chaperone (D 99.5 5.1E-14 1.1E-18 147.6 11.9 194 64-268 2-211 (306)
45 KOG0719 Molecular chaperone (D 99.5 2.9E-14 6.3E-19 145.5 5.7 71 63-133 12-85 (264)
46 KOG0721 Molecular chaperone (D 99.5 2.1E-13 4.5E-18 138.3 10.7 73 62-134 96-169 (230)
47 smart00271 DnaJ DnaJ molecular 99.4 9.9E-14 2.1E-18 114.1 5.2 57 65-121 1-59 (60)
48 cd06257 DnaJ DnaJ domain or J- 99.4 2.5E-13 5.3E-18 109.7 5.6 54 66-119 1-55 (55)
49 TIGR03835 termin_org_DnaJ term 99.4 4.8E-13 1E-17 155.3 7.3 70 65-134 2-71 (871)
50 COG2214 CbpA DnaJ-class molecu 99.4 5.3E-13 1.2E-17 133.4 6.6 67 64-130 5-73 (237)
51 KOG0720 Molecular chaperone (D 99.3 1.2E-12 2.6E-17 144.4 5.6 70 63-132 233-302 (490)
52 PHA03102 Small T antigen; Revi 99.3 2E-12 4.3E-17 126.8 6.0 67 65-134 5-73 (153)
53 PRK05014 hscB co-chaperone Hsc 99.2 2.3E-11 5E-16 121.7 7.0 67 65-131 1-75 (171)
54 KOG0722 Molecular chaperone (D 99.2 2.1E-11 4.6E-16 125.9 5.9 70 62-131 30-99 (329)
55 PRK01356 hscB co-chaperone Hsc 99.2 3.6E-11 7.8E-16 119.8 6.6 67 65-131 2-74 (166)
56 PRK00294 hscB co-chaperone Hsc 99.1 1E-10 2.2E-15 117.3 7.2 69 63-131 2-78 (173)
57 PRK09430 djlA Dna-J like membr 99.1 3.6E-10 7.9E-15 120.6 10.6 104 16-119 138-262 (267)
58 PRK03578 hscB co-chaperone Hsc 99.1 1.7E-10 3.6E-15 116.1 7.1 68 64-131 5-80 (176)
59 PTZ00100 DnaJ chaperone protei 99.0 6.8E-10 1.5E-14 104.1 5.4 52 64-118 64-115 (116)
60 PHA02624 large T antigen; Prov 98.9 2E-09 4.4E-14 124.5 5.7 59 65-126 11-71 (647)
61 COG5407 SEC63 Preprotein trans 98.8 3.6E-09 7.8E-14 116.7 5.6 72 63-134 96-173 (610)
62 KOG1150 Predicted molecular ch 98.8 6.5E-09 1.4E-13 104.5 5.4 64 64-127 52-117 (250)
63 PRK01773 hscB co-chaperone Hsc 98.7 3.9E-08 8.5E-13 98.8 7.1 67 65-131 2-76 (173)
64 TIGR00714 hscB Fe-S protein as 98.5 1E-07 2.2E-12 94.4 6.2 55 77-131 3-63 (157)
65 COG5269 ZUO1 Ribosome-associat 98.5 1.8E-07 4E-12 97.8 6.1 70 63-132 41-116 (379)
66 KOG1789 Endocytosis protein RM 97.7 5.2E-05 1.1E-09 90.8 6.6 54 64-119 1280-1337(2235)
67 KOG0568 Molecular chaperone (D 97.6 5.7E-05 1.2E-09 77.9 5.2 57 64-120 46-103 (342)
68 KOG0723 Molecular chaperone (D 97.0 0.0013 2.7E-08 61.0 5.2 49 69-120 60-108 (112)
69 KOG0431 Auxilin-like protein a 96.2 0.0051 1.1E-07 70.8 5.0 69 42-117 372-448 (453)
70 COG1076 DjlA DnaJ-domain-conta 95.5 0.015 3.3E-07 58.6 4.6 54 64-117 112-173 (174)
71 KOG3192 Mitochondrial J-type c 95.5 0.015 3.3E-07 57.3 4.3 70 62-131 5-82 (168)
72 COG1076 DjlA DnaJ-domain-conta 91.6 0.13 2.8E-06 51.9 2.9 66 66-131 2-75 (174)
73 PF07719 TPR_2: Tetratricopept 87.5 1.5 3.2E-05 31.1 4.9 33 8-40 1-33 (34)
74 KOG0624 dsRNA-activated protei 87.3 2.6 5.6E-05 47.2 8.8 111 4-116 34-158 (504)
75 PF11926 DUF3444: Domain of un 86.3 1.3 2.8E-05 46.6 5.7 76 528-612 124-210 (217)
76 PF13428 TPR_14: Tetratricopep 85.1 2.2 4.8E-05 32.9 5.1 39 11-49 4-42 (44)
77 PF13414 TPR_11: TPR repeat; P 83.8 2.4 5.2E-05 34.9 5.2 45 7-51 2-46 (69)
78 PF00515 TPR_1: Tetratricopept 83.6 2.9 6.4E-05 29.9 4.9 33 8-40 1-33 (34)
79 PF03656 Pam16: Pam16; InterP 81.9 2.9 6.2E-05 40.6 5.5 53 68-123 61-113 (127)
80 TIGR02098 MJ0042_CXXC MJ0042 f 80.4 0.77 1.7E-05 34.6 0.9 33 229-261 3-38 (38)
81 TIGR03835 termin_org_DnaJ term 75.3 2.1 4.5E-05 52.2 2.9 48 218-267 658-707 (871)
82 KOG4234 TPR repeat-containing 71.6 8.3 0.00018 40.6 5.8 39 4-42 91-129 (271)
83 KOG4234 TPR repeat-containing 69.0 13 0.00027 39.3 6.4 80 6-89 132-211 (271)
84 PF14853 Fis1_TPR_C: Fis1 C-te 67.6 23 0.0005 29.2 6.5 45 12-56 5-49 (53)
85 PF14863 Alkyl_sulf_dimr: Alky 67.5 10 0.00023 37.3 5.4 61 8-68 70-130 (141)
86 PF13432 TPR_16: Tetratricopep 66.8 12 0.00026 30.5 4.9 41 13-53 2-42 (65)
87 PLN03088 SGT1, suppressor of 66.1 55 0.0012 36.7 11.4 42 9-50 3-44 (356)
88 KOG0724 Zuotin and related mol 63.8 5.7 0.00012 43.9 3.1 55 76-130 3-62 (335)
89 KOG0553 TPR repeat-containing 63.5 28 0.0006 38.5 8.1 39 4-42 77-115 (304)
90 COG3097 Uncharacterized protei 62.8 8.7 0.00019 35.3 3.5 36 521-559 27-62 (106)
91 PF13181 TPR_8: Tetratricopept 62.7 14 0.00031 26.1 4.1 32 8-39 1-32 (34)
92 PF13371 TPR_9: Tetratricopept 61.5 16 0.00034 30.3 4.7 36 15-50 2-37 (73)
93 PF13414 TPR_11: TPR repeat; P 60.8 6.7 0.00014 32.3 2.3 36 4-39 33-69 (69)
94 PF03704 BTAD: Bacterial trans 60.5 18 0.00038 34.5 5.5 43 11-53 65-107 (146)
95 PF14559 TPR_19: Tetratricopep 59.2 16 0.00035 29.7 4.4 35 18-52 1-35 (68)
96 PF13719 zinc_ribbon_5: zinc-r 58.1 4.8 0.0001 30.6 0.9 31 229-259 3-36 (37)
97 PRK05685 fliS flagellar protei 57.4 39 0.00084 32.8 7.2 36 6-41 33-68 (132)
98 PF13174 TPR_6: Tetratricopept 53.7 22 0.00048 24.6 3.7 30 11-40 3-32 (33)
99 PF14559 TPR_19: Tetratricopep 53.7 26 0.00056 28.6 4.7 40 11-50 28-67 (68)
100 PF13717 zinc_ribbon_4: zinc-r 52.8 6.1 0.00013 30.0 0.7 29 230-258 4-35 (36)
101 PF13446 RPT: A repeated domai 51.9 29 0.00062 29.0 4.7 26 66-91 6-31 (62)
102 smart00028 TPR Tetratricopepti 49.2 32 0.00069 21.9 3.8 30 11-40 4-33 (34)
103 PF07219 HemY_N: HemY protein 47.2 61 0.0013 30.1 6.6 45 5-50 56-100 (108)
104 COG3063 PilF Tfp pilus assembl 47.2 1.1E+02 0.0025 32.9 9.1 72 4-97 30-102 (250)
105 PF13176 TPR_7: Tetratricopept 46.3 37 0.00081 25.0 4.1 29 11-39 2-30 (36)
106 KOG0714 Molecular chaperone (D 44.3 6.6 0.00014 41.2 -0.4 117 5-134 2-155 (306)
107 KOG3824 Huntingtin interacting 43.7 79 0.0017 35.4 7.6 76 4-82 112-188 (472)
108 PF13371 TPR_9: Tetratricopept 43.1 35 0.00075 28.2 3.9 46 5-50 26-71 (73)
109 KOG0547 Translocase of outer m 42.9 45 0.00098 39.3 5.9 50 6-55 113-162 (606)
110 PF13432 TPR_16: Tetratricopep 41.8 56 0.0012 26.4 4.9 35 7-41 30-64 (65)
111 PF10475 DUF2450: Protein of u 39.7 1.3E+02 0.0028 32.8 8.7 85 10-120 129-213 (291)
112 PF11817 Foie-gras_1: Foie gra 39.3 70 0.0015 34.0 6.4 39 3-41 173-211 (247)
113 PLN03088 SGT1, suppressor of 38.8 68 0.0015 36.0 6.5 81 8-90 36-118 (356)
114 KOG0543 FKBP-type peptidyl-pro 37.5 53 0.0011 37.7 5.3 78 12-93 261-338 (397)
115 PRK00398 rpoP DNA-directed RNA 37.3 22 0.00049 28.0 1.7 30 229-260 4-33 (46)
116 PF15469 Sec5: Exocyst complex 36.5 1.1E+02 0.0024 30.7 7.1 77 15-98 93-173 (182)
117 PF14369 zf-RING_3: zinc-finge 36.5 29 0.00063 26.3 2.1 29 231-260 5-33 (35)
118 PRK15174 Vi polysaccharide exp 35.0 2.3E+02 0.0049 34.6 10.6 112 13-126 289-413 (656)
119 TIGR02552 LcrH_SycD type III s 34.7 1.6E+02 0.0035 27.0 7.4 47 4-50 13-59 (135)
120 KOG0543 FKBP-type peptidyl-pro 33.7 88 0.0019 36.0 6.2 43 11-53 294-336 (397)
121 PF13374 TPR_10: Tetratricopep 32.2 1E+02 0.0022 22.2 4.6 34 8-41 2-35 (42)
122 PRK15359 type III secretion sy 31.4 1E+02 0.0022 29.8 5.6 42 8-49 58-99 (144)
123 PF11833 DUF3353: Protein of u 31.3 88 0.0019 32.5 5.4 40 74-120 1-40 (194)
124 PRK11827 hypothetical protein; 29.6 25 0.00055 29.9 0.9 32 230-266 10-41 (60)
125 TIGR02552 LcrH_SycD type III s 28.6 1.6E+02 0.0034 27.1 6.2 44 9-52 52-95 (135)
126 KOG0548 Molecular co-chaperone 27.6 2.6E+02 0.0057 33.4 8.8 37 8-44 358-394 (539)
127 cd04708 BAH_plantDCM_II BAH, o 27.5 93 0.002 32.7 4.8 53 506-565 11-71 (202)
128 TIGR00990 3a0801s09 mitochondr 27.5 1.3E+02 0.0029 35.9 6.8 35 7-41 126-160 (615)
129 PF06943 zf-LSD1: LSD1 zinc fi 26.6 36 0.00078 24.1 1.1 23 231-255 1-23 (25)
130 TIGR00208 fliS flagellar biosy 26.3 2E+02 0.0043 27.6 6.5 36 6-41 29-64 (124)
131 smart00834 CxxC_CXXC_SSSS Puta 26.0 77 0.0017 23.8 3.0 29 229-257 6-35 (41)
132 PF14346 DUF4398: Domain of un 25.4 1.3E+02 0.0028 27.5 4.9 32 6-37 43-74 (103)
133 PRK10866 outer membrane biogen 25.3 2.6E+02 0.0057 29.6 7.9 38 8-45 32-69 (243)
134 smart00531 TFIIE Transcription 25.1 24 0.00052 34.7 0.0 31 230-261 101-136 (147)
135 PF14687 DUF4460: Domain of un 25.1 99 0.0022 29.4 4.1 45 75-119 4-53 (112)
136 TIGR02605 CxxC_CxxC_SSSS putat 24.8 1.1E+02 0.0023 24.5 3.8 30 228-257 5-35 (52)
137 PRK00464 nrdR transcriptional 24.6 52 0.0011 33.0 2.3 18 248-265 28-45 (154)
138 PRK10370 formate-dependent nit 23.9 1.4E+02 0.0031 30.5 5.4 42 7-48 72-113 (198)
139 COG3813 Uncharacterized protei 23.3 26 0.00057 30.9 -0.1 37 222-266 22-59 (84)
140 PRK15359 type III secretion sy 23.2 2.4E+02 0.0052 27.2 6.6 38 11-48 27-64 (144)
141 PF04505 Dispanin: Interferon- 23.1 85 0.0018 28.1 3.1 24 15-38 44-67 (82)
142 PF13512 TPR_18: Tetratricopep 22.5 3.4E+02 0.0073 27.0 7.4 33 9-41 11-43 (142)
143 TIGR03302 OM_YfiO outer membra 22.5 1.3E+02 0.0028 30.7 4.8 31 12-42 170-200 (235)
144 TIGR02795 tol_pal_ybgF tol-pal 22.1 1.2E+02 0.0026 26.7 4.0 34 8-41 2-35 (119)
145 smart00439 BAH Bromo adjacent 22.0 2E+02 0.0043 26.2 5.5 40 528-567 3-45 (120)
146 PRK15179 Vi polysaccharide bio 21.6 5.1E+02 0.011 32.2 10.3 115 8-123 86-224 (694)
147 COG5552 Uncharacterized conser 21.3 2.5E+02 0.0055 25.0 5.5 61 65-129 3-63 (88)
148 PRK12370 invasion protein regu 21.1 4.6E+02 0.01 31.1 9.6 36 15-50 345-380 (553)
149 PRK10866 outer membrane biogen 21.0 1.9E+02 0.0041 30.7 5.8 100 11-118 72-175 (243)
150 TIGR03504 FimV_Cterm FimV C-te 20.9 1.5E+02 0.0032 23.6 3.7 25 12-36 3-27 (44)
151 COG1516 FliS Flagellin-specifi 20.7 2.9E+02 0.0064 27.2 6.4 36 6-41 29-64 (132)
152 TIGR01053 LSD1 zinc finger dom 20.4 54 0.0012 24.3 1.0 25 230-256 3-27 (31)
153 KOG1126 DNA-binding cell divis 20.4 81 0.0017 38.2 3.0 73 3-98 416-489 (638)
No 1
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=100.00 E-value=2.5e-83 Score=654.71 Aligned_cols=213 Identities=52% Similarity=0.989 Sum_probs=203.2
Q ss_pred CCCCccccccCCCCCCCCcccccCCCCCCCeEEEecCCCCCccceeEEEEeeecCCceEEEEecccCCCCCCCccceecC
Q 004014 502 NAPALSINVPDSDFHNFDLDRTESSFGDDQVWAAYDDDDGMPRYYARIHKVISLKPFKMKISWLNSRSNSEFGPVRWVDS 581 (779)
Q Consensus 502 ~~~~~~~~~pd~dF~dFd~~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~~~pFkl~iswLe~~~~~e~~~~~W~~~ 581 (779)
...+..|+||||||||||++|++++|++|||||+||+.||||||||||+||++.+||+|||+|||++++++. +++|+++
T Consensus 3 ~~~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~~~e~-~~~w~~~ 81 (217)
T PF11926_consen 3 NSSPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCPDSEE-EIRWEDE 81 (217)
T ss_pred CCCCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccCCccc-ceeeeec
Confidence 345789999999999999999999999999999999999999999999999987799999999999999985 8899999
Q ss_pred CceeeeeeeEeCceeeecccceeEEEeE-eeecCCccEEEeCCCCeEeEEecCCCCCCCCCCCCCccceeeEEEEecCCC
Q 004014 582 GFSKTCGDFRSGRHEISETLNAFSHKVK-WTKGARGAIRIFPCKGDIWALYRNWSPDWNERTPDELIHTYDMVEVLDDFN 660 (779)
Q Consensus 582 ~~pv~CG~F~~~~~~~~~~~~~FSH~v~-~~~g~~~~y~IyPrkGevWAlYk~Ws~~w~~~~~~~~~~~YdiVEVl~d~~ 660 (779)
+|||+||+|++|++.++.++++|||+|. +..|.++.|+|||||||||||||||+++|+.+++++..|+|||||||+||+
T Consensus 82 ~~pvsCG~Fk~~~~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~~ 161 (217)
T PF11926_consen 82 GLPVSCGTFKVGKTEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDYS 161 (217)
T ss_pred CCceEEEEEEeCCEEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecCC
Confidence 9999999999999999999999999985 667889999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeeecCccceeeecCCCC-ceEEecCCCccceecccCceeecCcccC
Q 004014 661 EAEGVSVEPLVKVAGFRTVFQKHADPK-KVRRIPKVEMFRFSHQVPSHFLTGKEAD 715 (779)
Q Consensus 661 ~~~gi~V~~L~kv~Gf~svF~~~~~~~-~~~~Ip~~e~~rFSHqVP~~~ltg~e~~ 715 (779)
++.||.|+||+||+||+|||++..+.+ .++.||++||+|||||||||||||+|++
T Consensus 162 ~~~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee~e 217 (217)
T PF11926_consen 162 EEAGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEEGE 217 (217)
T ss_pred ccCcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCccCC
Confidence 999999999999999999999997665 6799999999999999999999999963
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.6e-29 Score=269.67 Aligned_cols=149 Identities=23% Similarity=0.265 Sum_probs=111.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNK-AIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
.+|||+||||+++|+.+||||||||||++||||+|+ .+.|+++|++|+|||+|||||+||+.||++++++..++
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~g----- 77 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAG----- 77 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccC-----
Confidence 579999999999999999999999999999999999 88999999999999999999999999999999877311
Q ss_pred CCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCC
Q 004014 143 GVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQ 222 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 222 (779)
+.++ + ||.+|.. +..++ |+.||+ +|+.. +++++.+.++.++.+.
T Consensus 78 -g~gg-~---g~~~fgg--~~~DI-------------F~~~Fg---Gg~~~-------------~~~~~~~~rG~Dl~~~ 121 (371)
T COG0484 78 -GFGG-F---GFGGFGG--DFGDI-------------FEDFFG---GGGGG-------------RRRPNRPRRGADLRYN 121 (371)
T ss_pred -CcCC-C---CcCCCCC--CHHHH-------------HHHhhc---CCCcc-------------cCCCCCcccCCceEEE
Confidence 0000 0 2111111 22333 333332 11100 1111124458899999
Q ss_pred CCcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 223 NPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 223 ~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
+.+||+|++.||++.+.|.|.. .|..|+...
T Consensus 122 l~isleEa~~G~~~~i~~~~~~-----~C~~C~GsG 152 (371)
T COG0484 122 LEITLEEAVFGVKKEIRVTRSV-----TCSTCHGSG 152 (371)
T ss_pred EEeEhhhhccCceeeEecceee-----ECCcCCCCC
Confidence 9999999999999999997764 488888874
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=7.1e-24 Score=234.36 Aligned_cols=139 Identities=26% Similarity=0.349 Sum_probs=99.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNK-AIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||+++..++...
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~----- 76 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQA----- 76 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccC-----
Confidence 379999999999999999999999999999999998 46689999999999999999999999999997654110
Q ss_pred CCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCC-CCCCCccccccccccccccccCCCCCCCCCCCCcC
Q 004014 143 GVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFAS-PSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSN 221 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~-fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 221 (779)
++ +..+| ..+|+ .|+++|+. ||+||.. +.+ +.++.++++..
T Consensus 77 ~~-----~~~~~-------------~~~f~------~~~~~F~~~fg~g~~~------------~~~--~~~~~g~di~~ 118 (369)
T PRK14288 77 GA-----SQSDF-------------SDFFE------DLGSFFEDAFGFGARG------------SKR--QKSSIAPDYLQ 118 (369)
T ss_pred CC-----Ccccc-------------ccchh------hHHHHHHhhcCCCCcc------------cCc--CCCCCCCCeeE
Confidence 00 00111 11111 12223322 2222100 000 01223678888
Q ss_pred CCCcceeeeccccceeEEEeeeee
Q 004014 222 QNPGTFWTICNKCRTQYEYLRIYL 245 (779)
Q Consensus 222 ~~~~TFwtic~GC~kk~ey~R~~l 245 (779)
.+.+||+++|.||++.+.|.|..+
T Consensus 119 ~l~vslee~~~G~~~~i~~~r~~~ 142 (369)
T PRK14288 119 TIELSFKEAVFGCKKTIKVQYQSV 142 (369)
T ss_pred eccccHHHHhCCeEEEEEEEeecc
Confidence 999999999999999999987644
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.1e-23 Score=230.90 Aligned_cols=155 Identities=23% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+|||||.||+.||+++..++... . +
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~-~---~ 78 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGS-S---G 78 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCC-C---C
Confidence 46999999999999999999999999999999999988899999999999999999999999999998654211 0 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCC-CCCCccccccccccccccccCCCCCCCCCCCCcCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASP-SANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQ 222 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~f-g~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 222 (779)
.+ ++.++|. ..|..+.+.. ...|+++|+.| |+|+ . +. +.++.++++...
T Consensus 79 -~~--~~~~~~~---------~~~~~~~~~g--~~~f~d~f~~~fggg~-~------------~~---~~~~~g~di~~~ 128 (372)
T PRK14296 79 -FS--SNFGDFE---------DLFSNMGSSG--FSSFTNIFSDFFGSNK-S------------DY---QRSTKGQSVSLD 128 (372)
T ss_pred -cC--cCCCccc---------cccccccccc--cccchhhhhhhcCCCc-c------------CC---CCcCCCCCeEEE
Confidence 00 0001110 0011110000 00133333321 1111 0 00 012336788889
Q ss_pred CCcceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 223 NPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 223 ~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
+.+||+|+|.||++.+.|.|..+ |..|+..
T Consensus 129 l~ltlee~~~G~~~~i~~~~~~~-----C~~C~G~ 158 (372)
T PRK14296 129 IYLTFKELLFGVDKIIELDLLTN-----CSKCFGS 158 (372)
T ss_pred eeccHHHhhCCeeEEEEEeeeec-----cCCCCCC
Confidence 99999999999999999977643 6666654
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-23 Score=226.74 Aligned_cols=134 Identities=30% Similarity=0.417 Sum_probs=103.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
+..||+||||+++|+.+|||||||+||++||||||+. +.++|++|++||+|||||+||.+||++++.+.+.+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g------ 74 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG------ 74 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc------
Confidence 4689999999999999999999999999999999976 88999999999999999999999999998776221
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
+ +.+|+.. |+.||+ ||++|.. +++| ++++.+.+
T Consensus 75 ~-----~~~g~~~-----------------------f~~~F~-~g~~~~~-----------~~~r-------g~~~~~~~ 107 (337)
T KOG0712|consen 75 G-----GGGGFGG-----------------------FSQFFG-FGGNGGR-----------GRQR-------GKDVVHQL 107 (337)
T ss_pred C-----CCCCCcc-----------------------HHHhcc-CCCcCcc-----------cccc-------CCCceEEE
Confidence 0 0011100 333333 3322211 1111 56889999
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
.+||+++|.|-++++.+.| +..|+.|+..
T Consensus 108 ~~~Le~~y~G~s~kl~l~~-----~~iCs~C~Gs 136 (337)
T KOG0712|consen 108 KVTLEELYMGKSKKLFLSR-----NFICSKCSGS 136 (337)
T ss_pred EEEHHHhhcCCccceeccc-----CccCCcCCCC
Confidence 9999999999999999844 5669999865
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=3.2e-23 Score=230.77 Aligned_cols=171 Identities=23% Similarity=0.289 Sum_probs=108.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNK-AIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|+.|++||+|||||+||+.||++++.....+....
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~- 86 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR- 86 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc-
Confidence 379999999999999999999999999999999998 457899999999999999999999999999864321111100
Q ss_pred CCCccCCCCCCCCCCC---CCCChhhhcccccCCCCCCcccccccCCC-CCCCccccccccccccccccCCCCCCCCCCC
Q 004014 143 GVSFASSGTNGIHTST---KNATSQARARNDATRTSSTTQAGVSFASP-SANGIHRFTKNVTSQTKARNNATGTSSTSVP 218 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~---~~~~~~~~f~~ffg~~~p~s~F~~~f~~f-g~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~ 218 (779)
+..+ .++..+|. +. ...+....|..++++. ...|+++|+.| |.+| . ..+ ...++.+++
T Consensus 87 ~~~~-~~~~~g~~-~~~~~~~~d~~~~f~~~~~~~--~~~f~d~f~~~fg~~~-~------------~~~-~~~~~~g~d 148 (392)
T PRK14279 87 RFDG-GGGFGGFG-TGGDGAEFNLNDLFDAAGRGG--GGGIGDLFGGLFNRGG-G------------SAR-PSRPRRGND 148 (392)
T ss_pred cccC-CCCCCCcc-ccccccCcChhhhhccccccc--ccchhhhhhhhhcCCC-c------------ccc-cCCCCCCCC
Confidence 0000 00001110 00 0011112222111111 01144444432 1111 0 000 011233678
Q ss_pred CcCCCCcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 219 SSNQNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 219 ~~~~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
+...+.+||+|+|.||++++.|.|. ..|+.|+..-
T Consensus 149 i~~~l~ltLee~~~G~~~~v~~~~~-----~~C~~C~G~G 183 (392)
T PRK14279 149 LETETTLDFVEAAKGVTMPLRLTSP-----APCTTCHGSG 183 (392)
T ss_pred eEEEEEEEHHHHhCCeEEEEeeecc-----ccCCCCcccc
Confidence 8889999999999999999999665 4577777654
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=4.7e-23 Score=228.10 Aligned_cols=155 Identities=23% Similarity=0.306 Sum_probs=105.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNK-AIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||+++..++..+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~---- 78 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGA---- 78 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcccc----
Confidence 369999999999999999999999999999999998 467889999999999999999999999999986542110
Q ss_pred CCCccCCCCCCCCCCCC-CCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcC
Q 004014 143 GVSFASSGTNGIHTSTK-NATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSN 221 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~~-~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 221 (779)
++ .+.++|..|.. +.+..+. |+.||+. +++|.. . .+ ++ ..++.++++..
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~d~-------------f~~ffgg-~~~~~~--------~-~~-~~--~~~~~g~di~~ 128 (372)
T PRK14286 79 GG----FGQGAYTDFSDIFGDFGDI-------------FGDFFGG-GRGGGS--------G-GG-RR--SGPQRGSDLRY 128 (372)
T ss_pred CC----CCCCCcccccccccchhhH-------------HHHhhCC-CccCCC--------c-cc-cc--CCCCCCCCeeE
Confidence 00 01111111110 0111122 3333321 001100 0 00 00 11234678899
Q ss_pred CCCcceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 222 QNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 222 ~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
.+.+||+|+|.||++++.|.|..+ |..|...
T Consensus 129 ~l~vtLee~~~G~~k~i~~~r~~~-----C~~C~G~ 159 (372)
T PRK14286 129 NLEVSLEDAALGREYKIEIPRLES-----CVDCNGS 159 (372)
T ss_pred EEEEEHHHHhCCeeEEEEeecccc-----CCCCcCC
Confidence 999999999999999999977644 6666664
No 8
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.1e-22 Score=226.03 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=103.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||+||+||.+|+.||+++..+..... +
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~----~ 77 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSG----Q 77 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccccccc----C
Confidence 369999999999999999999999999999999999888999999999999999999999999999986542110 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCC-ccccccccccccccccCCCCCCCCCCCCcCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANG-IHRFTKNVTSQTKARNNATGTSSTSVPSSNQ 222 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 222 (779)
. ..+..+|..+. ..+..+.|..||+ .|||++ |.... .+. .+......+..++++...
T Consensus 78 ~---~~~~~~~~~~~-~~~~~d~f~~~f~-------------~fg~~~~fg~~~---~~~--~~~~~~~~~~~g~di~~~ 135 (382)
T PRK14291 78 Q---QQGQEGFSDFG-GGNIEDILEDVFD-------------IFGFGDIFGRRR---ATR--ERRKTYQRPVKGEDIYQT 135 (382)
T ss_pred c---ccccccccccc-CCCHHHHHHHHHH-------------hccccccccccc---ccc--ccccccccccCCCCEEEE
Confidence 0 01111211111 1122233333322 122111 00000 000 000001112246788889
Q ss_pred CCcceeeeccccceeEEEeeeee
Q 004014 223 NPGTFWTICNKCRTQYEYLRIYL 245 (779)
Q Consensus 223 ~~~TFwtic~GC~kk~ey~R~~l 245 (779)
+.+||++++.||++.+.|.|..+
T Consensus 136 l~vsLee~~~G~~~~i~~~r~~~ 158 (382)
T PRK14291 136 VEISLEEAYTGTTVSLEVPRYVP 158 (382)
T ss_pred EEEEHHHhhCCEEEEEEEeeecc
Confidence 99999999999999999988754
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=6.3e-23 Score=227.71 Aligned_cols=154 Identities=25% Similarity=0.341 Sum_probs=105.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||++++.++..+. +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~----~ 78 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGF----G 78 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCC----C
Confidence 369999999999999999999999999999999999888999999999999999999999999999986552111 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
+. .++..+|.....+++..++ |+.||++ || . .+. +..++.++++...+
T Consensus 79 ~~--~~~~~~~~~~~~~~~~~d~-------------f~~~fgg---~~-~-----------~~~--~~~~~~g~di~~~l 126 (380)
T PRK14276 79 GG--AGGFGGFDGSGGFGGFEDI-------------FSSFFGG---GG-A-----------RRN--PNAPRQGDDLQYRV 126 (380)
T ss_pred CC--CCCCCCccccccccchhhH-------------HHHHhCc---cc-c-----------ccC--cCCCCCCCCEEEEE
Confidence 00 0000111000000111122 3333321 11 0 000 01122366888899
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
.+||+++|.||++.+.|.|. ..|..|+..-
T Consensus 127 ~vtLee~~~G~~~~i~~~~~-----~~C~~C~G~G 156 (380)
T PRK14276 127 NLDFEEAIFGKEKEVSYNRE-----ATCHTCNGSG 156 (380)
T ss_pred EEEHHHhcCCeEEEEEeecc-----ccCCCCcCcc
Confidence 99999999999999999665 4477776653
No 10
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.1e-22 Score=225.37 Aligned_cols=140 Identities=26% Similarity=0.287 Sum_probs=100.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
..|||+||||+++|+.++||+|||+||++||||+|+...++++|++|++||+||+||.+|+.||+++..++..+. +
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~----~ 79 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY----S 79 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccccc----C
Confidence 479999999999999999999999999999999998888999999999999999999999999999976542110 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
+. .+| . .. . |++ ..+.|+.||+ +|| . +. ++.++.++++...+
T Consensus 80 -~~-----~~~-~--~~--------~-~~~--~~d~f~~~Fg---g~~-~------------~~--~~~~~~g~di~~~l 121 (377)
T PRK14298 80 -AE-----DIF-R--GA--------D-FGG--FGDIFEMFFG---GGG-R------------RG--RMGPRRGSDLRYDL 121 (377)
T ss_pred -cc-----ccc-c--cC--------C-cCc--chhhhHhhhc---CCC-c------------cC--CCCCCCCCCEEEEE
Confidence 00 000 0 00 0 000 0012333332 111 0 00 01123467888899
Q ss_pred CcceeeeccccceeEEEeeeee
Q 004014 224 PGTFWTICNKCRTQYEYLRIYL 245 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~l 245 (779)
.+||+++|.||++.+.|.|..+
T Consensus 122 ~vslee~~~G~~~~i~~~r~~~ 143 (377)
T PRK14298 122 YITLEEAAFGVRKDIDVPRAER 143 (377)
T ss_pred EEEHHHhhCCeEEEEEEEeecc
Confidence 9999999999999999988744
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.3e-22 Score=224.51 Aligned_cols=145 Identities=27% Similarity=0.339 Sum_probs=104.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+||+||.+|+.||+++..++..+. +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~----~ 78 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF----G 78 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc----C
Confidence 369999999999999999999999999999999998778899999999999999999999999999986542110 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
+ ++..+| .+..+.|..||++ || . .+ .+..++.++++...+
T Consensus 79 ~----~~~~~f------~~~~d~f~~~fgg----------------~~-~-----------~~--~~~~~~~g~d~~~~l 118 (371)
T PRK14287 79 G----GGAGDF------GGFSDIFDMFFGG----------------GG-G-----------RR--NPNAPRQGADLQYTM 118 (371)
T ss_pred C----CCCccc------cchHHHHHhhhcc----------------cc-C-----------CC--CCCCCCCCCCEEEEE
Confidence 0 000111 0111233333321 11 0 00 000122367888899
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
.+||+++|.||++.+.|.|.. .|..|...
T Consensus 119 ~vslee~~~G~~~~i~~~r~~-----~C~~C~G~ 147 (371)
T PRK14287 119 TLEFKEAVFGKETEIEIPREE-----TCGTCHGS 147 (371)
T ss_pred EEEHHHhcCCeEEEEEEeeec-----cCCCCCCc
Confidence 999999999999999997764 47777654
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.2e-22 Score=222.29 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=98.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||+||+|+.+|..||++++.++..+ .+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~----~~ 78 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGG----GG 78 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccC----CC
Confidence 699999999999999999999999999999999974 5688999999999999999999999999998654211 00
Q ss_pred CCccCCCCCCCCCCCC-CCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCC
Q 004014 144 VSFASSGTNGIHTSTK-NATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQ 222 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~-~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 222 (779)
.++ ...||..|.. ..+..+. |+.||++ .+| . . +. ..++.++++...
T Consensus 79 -~~~--~~~g~~~~~~~~~~~~d~-------------f~~~fgg--~~~-~-----------~--~~-~~~~~g~di~~~ 125 (365)
T PRK14285 79 -FEG--FSGGFSGFSDIFEDFGDI-------------FDSFFTG--NRG-Q-----------D--KN-RKHEKGQDLTYQ 125 (365)
T ss_pred -ccc--cCCCccccccccccHHHH-------------HHHhhcC--CcC-C-----------C--CC-cCCCCCCCEEEE
Confidence 000 0011100000 0011112 2222220 000 0 0 00 012236788889
Q ss_pred CCcceeeeccccceeEEEeeeee
Q 004014 223 NPGTFWTICNKCRTQYEYLRIYL 245 (779)
Q Consensus 223 ~~~TFwtic~GC~kk~ey~R~~l 245 (779)
+.+||+++|.||++.+.|.|..+
T Consensus 126 l~vtlee~~~G~~~~i~~~r~~~ 148 (365)
T PRK14285 126 IEISLEDAYLGYKNNINITRNML 148 (365)
T ss_pred EEEEHHHhhCCeEEEEEeeeccc
Confidence 99999999999999999988754
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.2e-22 Score=223.75 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=106.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||+||+|+.+|+.||+++..++...... .
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~-~ 82 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFG-Q 82 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccc-c
Confidence 4799999999999999999999999999999999984 5688999999999999999999999999998655211110 0
Q ss_pred CCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCC
Q 004014 143 GVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQ 222 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 222 (779)
++.+..+...+.+.+.+ ++..+ .|+.||+.| |||-. .++ .+.++.++++...
T Consensus 83 ~~~~~~g~~~~~~~~~~-~~~~d-------------~f~~~F~~~-fgg~~-----------~~~--~~~~~kg~di~~~ 134 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDF-GGFGD-------------IFEDIFGDF-FGTGR-----------RRA--ETGPQKGADIRYD 134 (386)
T ss_pred CCcCCCCccccCccccc-cchhH-------------HHHHhhccc-ccCCC-----------cCC--CCCCCCCCCEEEE
Confidence 00000000001111100 01111 233343321 11100 000 0112336788889
Q ss_pred CCcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 223 NPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 223 ~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
+.+||+++|.||++++.|.|..+ |+.|...-
T Consensus 135 l~vtLee~~~G~~~~v~~~r~~~-----C~~C~G~G 165 (386)
T PRK14277 135 LELTFEEAAFGTEKEIEVERFEK-----CDVCKGSG 165 (386)
T ss_pred EEEEHHHHhCCeEEEEEEEeecc-----CCCCCCCC
Confidence 99999999999999999977644 77776553
No 14
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.9e-22 Score=223.17 Aligned_cols=165 Identities=22% Similarity=0.258 Sum_probs=108.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
.|||+||||+++|+.++||+|||+||++||||+|+. ..|+++|+.|++||+||+|+.+|+.||+++..++..+. +
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~----~ 76 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGA----G 76 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccccccc----C
Confidence 499999999999999999999999999999999984 56889999999999999999999999999986541110 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCC--CCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRT--SSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSN 221 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~--~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 221 (779)
+. +..+|.+ ..++...|..+|++. ...+.|+.||+++|+ ++.. ..+ +..++.++++..
T Consensus 77 ~~----~~~g~~~---~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~-~~~~----------~~~--~~~~~~g~d~~~ 136 (391)
T PRK14284 77 GF----GGAGMGN---MEDALRTFMGAFGGEFGGGGSFFEGLFGGLGE-AFGM----------RGG--PAGARQGASKKV 136 (391)
T ss_pred Cc----CCCCcCc---ccchhhhccccccccccccccchhhhccCccc-cccc----------ccc--CCCcCCCCCeEE
Confidence 00 0011111 111222233333211 001234444432110 0100 000 001223678888
Q ss_pred CCCcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 222 QNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 222 ~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
.+.+||+++|.||++++.|.|. ..|..|+..-
T Consensus 137 ~l~vslee~~~G~~~~i~~~r~-----~~C~~C~G~G 168 (391)
T PRK14284 137 HITLSFEEAAKGVEKELLVSGY-----KSCDACSGSG 168 (391)
T ss_pred EEEEEHHHHhCCeeEEEEEeee-----ccCCCCcccc
Confidence 9999999999999999999765 4477776654
No 15
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.9e-22 Score=222.34 Aligned_cols=153 Identities=23% Similarity=0.320 Sum_probs=108.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+||+|+.+|+.||++++.++. +..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~-~~~---- 78 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD-GFS---- 78 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc-ccc----
Confidence 579999999999999999999999999999999998888999999999999999999999999999976541 100
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
. .+++. ..+....|..|+++ |+++|..|+|||.. . . .++.++++...+
T Consensus 79 ~-------~~~~~---~~~~~~~~~~~~~~------~~~~f~~~~fgg~~-------------~--~-~~~kg~di~~~l 126 (378)
T PRK14283 79 Q-------EDIFN---NINFEDIFQGFGFG------IGNIFDMFGFGGGS-------------R--H-GPQRGADIYTEV 126 (378)
T ss_pred c-------ccccc---ccCccccccccccc------hhhhccccccCCCC-------------C--C-CccCCCCeEEEe
Confidence 0 00000 00111112222211 33444433333210 0 0 012366888899
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
.+||+++|.||++.+.|.|. ..|+.|...-
T Consensus 127 ~vsLed~~~G~~~~i~~~r~-----~~C~~C~G~G 156 (378)
T PRK14283 127 EITLEEAASGVEKDIKVRHT-----KKCPVCNGSR 156 (378)
T ss_pred eeeHHHHhCCcceEEEeeee-----ccCCCCCccc
Confidence 99999999999999999776 4588887763
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=4.4e-22 Score=220.20 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=100.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC--CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA--IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQ 141 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~--~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~ 141 (779)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|+++|++|++||+||+||.+|+.||+++..+......
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~-- 80 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQ-- 80 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccc--
Confidence 3699999999999999999999999999999999974 458899999999999999999999999998765421100
Q ss_pred CCCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcC
Q 004014 142 PGVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSN 221 (779)
Q Consensus 142 ~~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 221 (779)
+ .+ +.++|+. +.+..|..+|+ .+.|+.||++ ++| + .++ ...++.++++..
T Consensus 81 -~-~~---~~g~~~~-----~~~~~~~~~~~----~d~f~~~fgg--~~~----------~--~~~--~~~~~~g~di~~ 130 (369)
T PRK14282 81 -E-TE---SGGGFFE-----DIFKDFENIFN----RDIFDIFFGE--RRT----------Q--EEQ--REYARRGEDIRY 130 (369)
T ss_pred -c-CC---CCCcccc-----ccccccccccc----chhhhHhhcc--cCC----------c--ccc--cCCCCCCCCeEE
Confidence 0 00 0012110 00001111111 1123444321 011 0 000 011234678888
Q ss_pred CCCcceeeeccccceeEEEeeeee
Q 004014 222 QNPGTFWTICNKCRTQYEYLRIYL 245 (779)
Q Consensus 222 ~~~~TFwtic~GC~kk~ey~R~~l 245 (779)
.+.+||+++|.||++++.|.|..+
T Consensus 131 ~l~~slee~~~G~~~~i~~~r~~~ 154 (369)
T PRK14282 131 EIEVTLSDLINGAEIPVEYDRYET 154 (369)
T ss_pred EEEEEHHHhcCCeEEEEEeeeccc
Confidence 999999999999999999988744
No 17
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=3.4e-22 Score=221.58 Aligned_cols=149 Identities=26% Similarity=0.353 Sum_probs=105.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPGV 144 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (779)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||++++.++..+. ++
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~----~~ 79 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGF----GG 79 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCc----CC
Confidence 69999999999999999999999999999999999888999999999999999999999999999986552111 00
Q ss_pred CccCCCCCCCC-CCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 145 SFASSGTNGIH-TSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 145 ~~~~~~~~g~~-~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
++ .+..+|. .| +..+. |+.||+ .+| . + +.++.++.++++...+
T Consensus 80 ~~--~~~~~~~~~~----~~~d~-------------f~~~fg---g~~-~------------~-~~~~~~~kg~di~~~l 123 (376)
T PRK14280 80 GG--FGGGDFGGGF----GFEDI-------------FSSFFG---GGG-R------------R-RDPNAPRQGADLQYTM 123 (376)
T ss_pred CC--CCCCCccccc----cchhh-------------HHHHhC---Ccc-c------------c-CcccccccccCEEEEE
Confidence 00 0000110 00 01112 333332 111 0 0 0001122367888899
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
.+||+++|.||++.+.|.|..+ |+.|+..-
T Consensus 124 ~vtLee~~~G~~~~i~~~r~~~-----C~~C~G~G 153 (376)
T PRK14280 124 TLTFEEAVFGKEKEIEIPKEET-----CDTCHGSG 153 (376)
T ss_pred EEEHHHHhCCceeEEEEeeecc-----CCCCCCcc
Confidence 9999999999999999977644 77777663
No 18
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=3.6e-22 Score=221.70 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=104.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||++++.++..+ +
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~-----~ 78 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGA-----G 78 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccccc-----C
Confidence 699999999999999999999999999999999984 5688999999999999999999999999998654211 0
Q ss_pred CCccCCCCCCCCCCC--CCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcC
Q 004014 144 VSFASSGTNGIHTST--KNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSN 221 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~--~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 221 (779)
+. +.++|.+|. ..++..++| +.||++ ++||.. + + ...++.++++..
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~d~f-------------~~~fgg-~~g~~~------------~-~-~~~~~kg~di~~ 126 (380)
T PRK14297 79 GF----GSGGFGGFDFSDMGGFGDIF-------------DSFFGG-GFGSSS------------R-R-RNGPQRGADIEY 126 (380)
T ss_pred CC----CCCCCCCcCcccccchhHHH-------------HHHhcc-Cccccc------------c-c-cCCCCCCCCEEE
Confidence 00 001111111 001112233 333321 011100 0 0 011233678889
Q ss_pred CCCcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 222 QNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 222 ~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
.+.+||+|+|.||++++.|.|.. .|+.|...-
T Consensus 127 ~l~vsLee~~~G~~~~i~~~r~~-----~C~~C~G~G 158 (380)
T PRK14297 127 TINLTFEEAVFGVEKEISVTRNE-----NCETCNGTG 158 (380)
T ss_pred EEEEEHHHhcCCeEEEEEeeeec-----cCCCccccc
Confidence 99999999999999999997764 477776653
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.3e-21 Score=216.21 Aligned_cols=143 Identities=23% Similarity=0.292 Sum_probs=99.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
..|||+||||+++|+.++||+|||+||++||||+|+. +.++++|+.|++||+||+||.+|+.||++++.++..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~----- 77 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGT----- 77 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCC-----
Confidence 3799999999999999999999999999999999984 6688999999999999999999999999998655210
Q ss_pred CCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCC
Q 004014 143 GVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQ 222 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 222 (779)
+ .+ +..+| . .+|+. ..+.|+.||+ +||.. . ++ ..+.++.++++...
T Consensus 78 ~-~~---~~~~~---~----------~~~~~--~~d~f~~~fg---~g~~~--------~--~~--~~~~~~~g~d~~~~ 123 (366)
T PRK14294 78 G-FS---GFSGF---D----------DIFSS--FGDIFEDFFG---FGGGR--------R--GR--SRTAVRAGADLRYD 123 (366)
T ss_pred C-CC---CcCcc---c----------cchhh--hhhhHHHhhc---cCCCc--------C--Cc--ccCCCCCCCCceEE
Confidence 0 00 00111 0 00000 0012333332 11100 0 00 00112336788889
Q ss_pred CCcceeeeccccceeEEEeeeee
Q 004014 223 NPGTFWTICNKCRTQYEYLRIYL 245 (779)
Q Consensus 223 ~~~TFwtic~GC~kk~ey~R~~l 245 (779)
+.+||+++|.||++.+.|.|..+
T Consensus 124 l~lslee~~~G~~~~i~~~r~~~ 146 (366)
T PRK14294 124 LTLPFLEAAFGTEKEIRIQKLET 146 (366)
T ss_pred EEeeHHHhcCCeEEEEEeeeccc
Confidence 99999999999999999987643
No 20
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.4e-22 Score=212.27 Aligned_cols=73 Identities=36% Similarity=0.537 Sum_probs=69.5
Q ss_pred cCCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 62 NGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
...+|||+||||+++|++.+||+|||||||+||||||++ +.|.+.|+.|+.||+|||||++|+.||.+|+.++
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL 86 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL 86 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence 346899999999999999999999999999999999995 8899999999999999999999999999998877
No 21
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1e-21 Score=217.95 Aligned_cols=145 Identities=25% Similarity=0.310 Sum_probs=102.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPGV 144 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (779)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+||+|+.+|+.||+++.... .+ ++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~-~~-----~~ 76 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLE-SA-----GG 76 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccc-cc-----cC
Confidence 6999999999999999999999999999999999987789999999999999999999999999987422 10 00
Q ss_pred CccCCCCCCCC-CCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 145 SFASSGTNGIH-TSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 145 ~~~~~~~~g~~-~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
.+ .+|. .| ++..+. |+.||++ || . ++.. .+.++.++++...+
T Consensus 77 ~~-----~g~~~~f---~~~~d~-------------f~~ffgg---~g-~-----------~~~~-~~~~~~g~d~~~~l 119 (378)
T PRK14278 77 GG-----GGFGGGF---GGLGDV-------------FEAFFGG---GA-A-----------SRGP-RGRVRPGSDSLLRM 119 (378)
T ss_pred CC-----CCCCcCc---CchhHH-------------HHHHhCC---CC-C-----------CCCC-ccCCCCCCCeEEEE
Confidence 00 0110 01 111122 3333321 11 0 0000 00123367888899
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
.+||+++|.||++.+.|.|. ..|+.|+..
T Consensus 120 ~vtLee~~~G~~~~i~~~~~-----~~C~~C~G~ 148 (378)
T PRK14278 120 RLDLEECATGVTKQVTVDTA-----VLCDRCHGK 148 (378)
T ss_pred EEEHHHhcCCeEEEEEEEee-----ccCCCCcCc
Confidence 99999999999999999776 447777664
No 22
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.85 E-value=8.6e-22 Score=220.72 Aligned_cols=134 Identities=23% Similarity=0.274 Sum_probs=100.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
..|||+||||+++|+.++||+|||+||++||||+|++ .++|++|++||+||+||.||+.||+++..++.. +
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~------~ 97 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEG------G 97 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhccc------C
Confidence 5799999999999999999999999999999999853 589999999999999999999999998754410 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
. + + .+..+.|..||++ |+ . . +.++.++++...+
T Consensus 98 ---~--~--~-------~d~~d~f~~~Fgg----------------g~-~--------~--------~~~~rg~di~~~l 130 (421)
T PTZ00037 98 ---E--Q--P-------ADASDLFDLIFGG----------------GR-K--------P--------GGKKRGEDIVSHL 130 (421)
T ss_pred ---C--C--C-------cchhhhHHHhhcc----------------cc-c--------c--------ccccCCCCEEEEe
Confidence 0 0 0 1111223333321 00 0 0 0012366888889
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
.+||+++|.||++++.|.|. ..|..|+..-
T Consensus 131 ~vtLee~~~G~~~~i~~~r~-----~~C~~C~G~G 160 (421)
T PTZ00037 131 KVTLEQIYNGAMRKLAINKD-----VICANCEGHG 160 (421)
T ss_pred eeeHHHHhCCCceEEEeecc-----ccccccCCCC
Confidence 99999999999999999665 5588887764
No 23
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.85 E-value=1.7e-21 Score=214.36 Aligned_cols=151 Identities=26% Similarity=0.323 Sum_probs=104.7
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCCCC
Q 004014 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPGVS 145 (779)
Q Consensus 66 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~~ 145 (779)
|||+||||+++|+.++||+|||+||++||||+++.+.++++|++|++||+||+|+.+|..||+++..+...+. ++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~----~~- 75 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGG----GG- 75 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccC----cC-
Confidence 8999999999999999999999999999999998777899999999999999999999999999876542110 00
Q ss_pred ccCCCCCCCCCCC--CCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 146 FASSGTNGIHTST--KNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 146 ~~~~~~~g~~~~~--~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
..++|..+. ...+..+. |+.||++ ++|+ . +.+ ...++.++++...+
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~-------------f~~~fg~-~~g~-~------------~~~-~~~~~~~~d~~~~l 123 (354)
T TIGR02349 76 ----GGGGFNGFDIGFFGDFGDI-------------FGDFFGG-GGGS-G------------RRR-RSGPRRGEDLRYDL 123 (354)
T ss_pred ----CCCCcCCccccCcCchhhh-------------HHHHhcc-Cccc-C------------ccc-cCCCCCCCCeEEEE
Confidence 001111111 00111122 3333321 0000 0 000 01123467888899
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
.+||+++|.||++++.|.|. ..|+.|...-
T Consensus 124 ~vsLee~~~G~~~~i~~~r~-----~~C~~C~G~G 153 (354)
T TIGR02349 124 ELTFEEAVFGVEKEIEIPRK-----ESCETCHGTG 153 (354)
T ss_pred EEEHHHHhCCeeEEEEeecC-----CcCCCCCCCC
Confidence 99999999999999999665 5588887653
No 24
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3.3e-21 Score=206.95 Aligned_cols=163 Identities=23% Similarity=0.281 Sum_probs=107.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||++|+|+.+|..||+++..+...+.. +
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~---~ 79 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQ---G 79 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcccccccc---C
Confidence 3699999999999999999999999999999999988889999999999999999999999999999864421110 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
+.++.++..+|.++. ..+..+.|..|||+..+ |+ +++...+ ... ..++.+.++...+
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~d~f~~~fgg~~~---~~------~~g~~~~------------~~~-~~~~~g~dl~~~l 136 (291)
T PRK14299 80 PPPGPPGGGDFSGFN-VGDFSDFFQQLFGGRGG---FG------GFGDLFG------------SVG-RRARKGRDLEAEL 136 (291)
T ss_pred CCCCCCCCCCccccC-cCCHHHHHHHHhCCCCC---CC------Ccccccc------------ccc-CCCCCCCCEEEEE
Confidence 000000111111110 11223445555542100 00 0000000 000 0123366888999
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccceEEEEcCCC
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAFLAVEKPPP 266 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f~Avev~pp 266 (779)
.+||+++|.||++.+.+. ...+.|.|+++
T Consensus 137 ~isL~ea~~G~~~~i~l~--------------g~~~~V~Ip~G 165 (291)
T PRK14299 137 PLTLEEAYRGGEKVVEVA--------------GERLSVRIPPG 165 (291)
T ss_pred EecHHHHhCCCeEEEeeC--------------CEEEEEecCCC
Confidence 999999999999998763 23566777776
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=9.9e-22 Score=217.65 Aligned_cols=149 Identities=21% Similarity=0.320 Sum_probs=103.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|+++|++|++||+||+||.+|+.||+++..++..+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~----- 77 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGN----- 77 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccC-----
Confidence 3699999999999999999999999999999999974 5688899999999999999999999999997654110
Q ss_pred CCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCC-CCCCCccccccccccccccccCCCCCCCCCCCCcC
Q 004014 143 GVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFAS-PSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSN 221 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~-fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 221 (779)
++ ..+|.. ..+ +|. .|+++|+. ||+||.. . . +.. .++.++++..
T Consensus 78 ~~------~~g~~~---~~~-------~~~------~f~d~f~~~fg~g~~~--------~--~--~~~-~~~~g~di~~ 122 (373)
T PRK14301 78 GG------FGGFSS---AED-------IFS------HFSDIFGDLFGFSGGG--------S--R--RGP-RPQAGSDLRY 122 (373)
T ss_pred CC------CCCccc---ccc-------ccc------chHHHHHHHhhccCcc--------c--c--cCC-CCCCCCCEEE
Confidence 00 011100 000 010 12233322 1211100 0 0 000 1223678888
Q ss_pred CCCcceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 222 QNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 222 ~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
.+.+||+|+|.||++.+.|.|. ..|..|...
T Consensus 123 ~l~vtLee~~~G~~k~i~~~r~-----~~C~~C~G~ 153 (373)
T PRK14301 123 NLTVSFRQAAKGDEVTLRIPKN-----VTCDDCGGS 153 (373)
T ss_pred EEeccHHHHhCCceEEEEeeec-----ccCCCCCCc
Confidence 9999999999999999999665 447777665
No 26
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.7e-21 Score=215.19 Aligned_cols=160 Identities=26% Similarity=0.336 Sum_probs=104.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhh----cCCccCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNE----KLNPRGQQKY 138 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~----~~~~~~~~~~ 138 (779)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|+++|++|++||+||+||.+|+.||+ +++.++..+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~- 86 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG- 86 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC-
Confidence 4699999999999999999999999999999999974 5689999999999999999999999999 776544110
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCChhhhcccccCCC---CCCcccccccCCCCCCCccccccccccccccccCCCCCCCC
Q 004014 139 PAQPGVSFASSGTNGIHTSTKNATSQARARNDATRT---SSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSST 215 (779)
Q Consensus 139 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~---~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~ 215 (779)
.++ + +..+| .+ ++...|..++++. .....|+++|+.| |||-. +. ..++.
T Consensus 87 ---~~~-~---~~~~~-~~----~~~~~f~~~~~~~~~~~~~~~f~d~f~~~-fg~~~------------~~---~~~~~ 138 (389)
T PRK14295 87 ---PGG-G---GGGGF-NF----DLGDLFGGGAQGGGGAGGGGGLGDVFGGL-FNRGG------------RR---TQPRR 138 (389)
T ss_pred ---CCC-C---CCCCC-Cc----ccccccccccccccccccccchhhhhccc-ccCCC------------CC---CCCCC
Confidence 000 0 00111 11 1111121111000 0001133344321 11100 00 01223
Q ss_pred CCCCcCCCCcceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 216 SVPSSNQNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 216 ~~~~~~~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
++++...+.+||+++|.||++++.|.|. ..|..|...
T Consensus 139 g~di~~~l~lsLee~~~G~~k~i~~~r~-----~~C~~C~G~ 175 (389)
T PRK14295 139 GADVESEVTLSFTEAIDGATVPLRLTSQ-----APCPACSGT 175 (389)
T ss_pred CCCEEEEEEEEHHHHhCCceEEEEeecc-----ccCCCCccc
Confidence 6788889999999999999999999665 447777665
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.8e-21 Score=214.58 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=107.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPG 143 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (779)
.|||+||||+++|+.++||+|||+||++||||+++. ..|+++|++|++||+||+|+.+|+.||+++..++...... +
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~--~ 80 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAAS--G 80 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhcccccc--C
Confidence 699999999999999999999999999999999974 5688999999999999999999999999998655211000 0
Q ss_pred CCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCC
Q 004014 144 VSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQN 223 (779)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 223 (779)
+ +++.+ .+.+. ..+.+..|..||++... |+..+ .|+|.+.. .+ . .......+++.++++...+
T Consensus 81 ~-~~~~~-~~~~~---~~d~f~~f~~~Fgg~~~---~~~~~-~~~~~~~~-----~g-~--~~~~~~~~~~~g~di~~~l 143 (397)
T PRK14281 81 G-GPGYG-GGGGD---FNDIFSAFNDMFGGGAR---RGGGS-PFGFEDVF-----GG-G--GRRRRASAGIPGTDLKIRL 143 (397)
T ss_pred C-CCCCC-cCCCC---HHHHHHHHHHHhCCCcc---ccccc-cccccccc-----CC-C--cccccccCCCCCCCEEEEE
Confidence 0 00000 00000 01122223345543110 00000 00000000 00 0 0000001123467888899
Q ss_pred CcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 224 PGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 224 ~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
.+||+++|.||++++.|.|..+ |..|...-
T Consensus 144 ~vtLee~~~G~~~~i~~~r~~~-----C~~C~G~G 173 (397)
T PRK14281 144 KLTLEEIAKGVEKTLKIKKQVP-----CKECNGTG 173 (397)
T ss_pred EeEHHHHhCCeEEEEEEEeeec-----CCCCCCcc
Confidence 9999999999999999977644 77777653
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.7e-21 Score=212.18 Aligned_cols=147 Identities=23% Similarity=0.361 Sum_probs=103.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|+++|++|++||++|+|+.+|..||+++..+...+
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~----- 77 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQG----- 77 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccC-----
Confidence 3699999999999999999999999999999999973 5688999999999999999999999999997654211
Q ss_pred CCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCC-CCCCccccccccccccccccCCCCCCCCCCCCcC
Q 004014 143 GVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASP-SANGIHRFTKNVTSQTKARNNATGTSSTSVPSSN 221 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~f-g~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 221 (779)
++ . .+|.++.. | + +.|+++|+.| |+++ . .+. +.++.++++..
T Consensus 78 ~~---~---~~~~~~~~-------~----~-----~~f~~~f~~~fgg~~-~-----------~~~---~~~~~g~di~~ 120 (371)
T PRK10767 78 GG---G---GGFGGGGG-------F----G-----DIFGDIFGDIFGGGR-G-----------GGR---QRARRGADLRY 120 (371)
T ss_pred CC---C---CCCCCccc-------c----c-----cchhhhhhhhccCCc-c-----------ccC---CCCCCCCCeEE
Confidence 00 0 01100000 0 0 1133333321 1111 0 000 01234678888
Q ss_pred CCCcceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 222 QNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 222 ~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
.+.+||++++.||++.+.|.|. ..|+.|...
T Consensus 121 ~l~vsLee~~~G~~~~v~~~r~-----~~C~~C~G~ 151 (371)
T PRK10767 121 NMEITLEEAVRGVTKEIRIPTL-----VTCDTCHGS 151 (371)
T ss_pred EEEeehHHhhCCeeEEEeeeec-----ccCCCCCCc
Confidence 8999999999999999999665 447777664
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.2e-20 Score=208.59 Aligned_cols=155 Identities=24% Similarity=0.323 Sum_probs=106.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCC--CchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAI--GADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQP 142 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~--~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (779)
.|||+||||+++|+.++||+|||+||+++|||+++.. .|+++|+.|++||+||+|+.+|..||++++.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~------ 76 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGA------ 76 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccccc------
Confidence 6999999999999999999999999999999999753 58899999999999999999999999999865410
Q ss_pred CCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCC
Q 004014 143 GVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQ 222 (779)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 222 (779)
+++ ..+..+|.. .++..+.|..||++. |+..+ ++|. ++. +++.+.++++...
T Consensus 77 ~~~--~~~~~~~~~---~~~~~d~f~~~fg~~-----~~~~~----~~~~------------~~~--~~~~~~~~di~~~ 128 (365)
T PRK14290 77 GGS--NFNWDNFTH---FSDINDIFNQIFGGN-----FGSDF----FSGF------------GNQ--QSTRNIDLDIYTN 128 (365)
T ss_pred CCC--Ccccccccc---ccchhHHHHHHhcCc-----ccccc----cccc------------ccc--cCCCCCCCCEEEE
Confidence 000 000011111 123334455555421 00000 0010 000 0001125688888
Q ss_pred CCcceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 223 NPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 223 ~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
+.+||+++|.||++++.|.|. ..|+.|...-
T Consensus 129 l~lsLee~~~G~~~~i~~~r~-----~~C~~C~G~g 159 (365)
T PRK14290 129 LDISLEDAYYGTEKRIKYRRN-----AMCPDCSGTG 159 (365)
T ss_pred EEecHHHhcCCEEEEEEeeec-----ccCCCCcccc
Confidence 999999999999999999665 4588777654
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.7e-20 Score=207.72 Aligned_cols=153 Identities=22% Similarity=0.324 Sum_probs=105.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPGV 144 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (779)
.|||+||||+++|+.++||+|||+||++||||+++...++++|++|++||++|+|+.+|+.||+++..++...... +
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~--~- 79 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSR--G- 79 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccccccccc--C-
Confidence 6999999999999999999999999999999999877789999999999999999999999999987654211000 0
Q ss_pred CccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCCC
Q 004014 145 SFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQNP 224 (779)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 224 (779)
+.++.++| . .+... +|++||+.| |||-. +....+.++.++++...+.
T Consensus 80 --~~g~~~~~---~--~~~~~-------------~f~~~f~~~-~gg~~------------~~~~~~~~~~g~di~~~l~ 126 (372)
T PRK14300 80 --GGGNHGGF---H--PDIND-------------IFGDFFSDF-MGGSR------------RSRPTSSKVRGSDLKYNLT 126 (372)
T ss_pred --CCCCCCcc---c--cchhh-------------hHHHHHHhh-cCCCC------------CCCCCcCCCCCCCeeEEEE
Confidence 00000111 0 00111 244444321 11100 0000011123678888999
Q ss_pred cceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 225 GTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 225 ~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
+||+++|.||++.+.|.|. ..|+.|...-
T Consensus 127 ~sLee~~~G~~k~i~~~r~-----~~C~~C~G~g 155 (372)
T PRK14300 127 INLEEAFHGIEKNISFSSE-----VKCDTCHGSG 155 (372)
T ss_pred EEHHHHhCCceEEEEeeec-----cccCCCCCcc
Confidence 9999999999999999775 3466666543
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2e-20 Score=207.25 Aligned_cols=148 Identities=23% Similarity=0.295 Sum_probs=106.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPGV 144 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (779)
.|||+||||+++|+.++||+|||+||+++|||+++...++++|++|++||+||+||.+|+.||+++..+.. + .++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~-~----~~~ 76 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGA-G----MPG 76 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccc-c----ccC
Confidence 59999999999999999999999999999999999888999999999999999999999999999875421 0 000
Q ss_pred CccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCCC
Q 004014 145 SFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQNP 224 (779)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 224 (779)
+ .+|.++. .++.+.|..|||+. ++++ . .. .+.++.+.++...+.
T Consensus 77 -~-----~~~~~~~--~d~~d~f~~~fg~~-------------~~~~-~------------~~--~~~~~~g~d~~~~l~ 120 (371)
T PRK14292 77 -G-----DPFGGMG--FDPMDIFEQLFGGA-------------GFGG-G------------RG--RRGPARGDDLETEAR 120 (371)
T ss_pred -C-----cccCccC--CChHHHHHHhhCCC-------------CcCC-C------------CC--cccccCCCCeEEEEe
Confidence 0 0010000 12234444444321 1111 0 00 001233678888899
Q ss_pred cceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 225 GTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 225 ~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
+||++++.||++.+.|.|.. .|+.|...-
T Consensus 121 ~sLee~~~G~~~~v~~~r~~-----~C~~C~G~G 149 (371)
T PRK14292 121 ITLEQARAGEEVEVEVDRLT-----ECEHCHGSR 149 (371)
T ss_pred ccHHHHcCCeEEEEEEEeee-----cCCCCcccc
Confidence 99999999999999997764 488887664
No 32
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.6e-20 Score=204.56 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=103.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPGV 144 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (779)
.|||+||||+++|+.++||+|||+||+++|||+|+.+.++++|++|++||+||+|+.+|+.||+++..++..+ +
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~-----~- 76 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGA-----A- 76 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccC-----C-
Confidence 6999999999999999999999999999999999988899999999999999999999999999987544100 0
Q ss_pred CccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCCC
Q 004014 145 SFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQNP 224 (779)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 224 (779)
+.+++..+ +...+.|.. ||+.|+++| . ..... + .+.++.++++...+.
T Consensus 77 -----~~~~~~~~---~~~~d~f~~-------------~fg~~~~~~-~--------~~~~~-~-~~~~~kg~di~~~l~ 124 (374)
T PRK14293 77 -----GFPDMGDM---GGFADIFET-------------FFSGFGGAG-G--------QGGRR-R-RRGPQRGDDLRYDLK 124 (374)
T ss_pred -----CcCCcccc---cchHHHHHH-------------HhcccCCCC-C--------CCccc-c-ccCccCCCCeEEEEE
Confidence 00000000 011123333 332211101 0 00000 0 011223567888899
Q ss_pred cceeeeccccceeEEEeeeeeCCccCCCccccc
Q 004014 225 GTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEA 257 (779)
Q Consensus 225 ~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~ 257 (779)
+||+++|.||++.+.|.|. ..|..|...
T Consensus 125 vsLee~~~G~~k~i~~~r~-----~~C~~C~G~ 152 (374)
T PRK14293 125 LDFREAIFGGEKEIRIPHL-----ETCETCRGS 152 (374)
T ss_pred eeHHHHhCCceEEEEeecc-----ccCCCCCCc
Confidence 9999999999999999665 446666553
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.80 E-value=1.3e-19 Score=196.03 Aligned_cols=164 Identities=21% Similarity=0.279 Sum_probs=106.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPGV 144 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (779)
.|||+||||++.|+.++||+|||+||++||||+++...++++|++|++||++|+|+.+|+.||+++......+...
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~---- 79 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNR---- 79 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccc----
Confidence 6999999999999999999999999999999999888899999999999999999999999999875321001000
Q ss_pred CccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCCC
Q 004014 145 SFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQNP 224 (779)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 224 (779)
. .+.+..+ .+. ..+..+.|..+|++. ++.. + +.+++.+.++...+.
T Consensus 80 ~-~~~~~~~--~~~-~~~~~~~f~~~~g~~---------------~~~~------------~---~~~~~kg~di~~~v~ 125 (306)
T PRK10266 80 Q-FQHGDGQ--SFN-AEDFDDIFSSIFGQH---------------ARQS------------R---QRPAARGHDIEIEVA 125 (306)
T ss_pred c-cccCCCC--CCC-CCCHHHHHHHHhCCC---------------CCCC------------C---CCCCCCCCceEEEEE
Confidence 0 0000000 010 111223333333210 0000 0 011223678888999
Q ss_pred cceeeeccccceeEEEeeeeeCCcc-CCCccccceEEEEcCCCC
Q 004014 225 GTFWTICNKCRTQYEYLRIYLNNTL-LCPNCHEAFLAVEKPPPS 267 (779)
Q Consensus 225 ~TFwtic~GC~kk~ey~R~~ln~~l-~C~~C~~~f~Avev~pp~ 267 (779)
+||+++|.||.+.+.+.+..++..+ ....+ ...+.|.|++++
T Consensus 126 isLee~~~G~~k~i~~~~~~~~g~G~~~~~~-~~~~~V~Ip~G~ 168 (306)
T PRK10266 126 VFLEETLTEHKRTISYNLPVYNAFGMIEQEI-PKTLNVKIPAGV 168 (306)
T ss_pred EEHHHhcCCceEEEEEecccccCCCeEEEee-eEEEEEEECCCC
Confidence 9999999999999998775432111 00011 135677777763
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1e-19 Score=202.46 Aligned_cols=71 Identities=34% Similarity=0.540 Sum_probs=66.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|+.|++||++|+|+.+|+.||+++..++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 4799999999999999999999999999999999974 5689999999999999999999999999987654
No 35
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.79 E-value=7.4e-19 Score=187.21 Aligned_cols=126 Identities=27% Similarity=0.313 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHHHH
Q 004014 5 KDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRK 84 (779)
Q Consensus 5 k~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eIKk 84 (779)
.+.+.-++++||.+|...+|+.|...+.+|+.+.++...+..-+..+..+. +..+.+|||+||||.++|+..+|-|
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlk----kqs~kRDYYKILGVkRnAsKqEI~K 413 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLK----KQSGKRDYYKILGVKRNASKQEITK 413 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH----HHhccchHHHHhhhcccccHHHHHH
Confidence 567888999999999999999999999999999999988888888777654 4567899999999999999999999
Q ss_pred HHHHhhhhhCCCCCCCC----CchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 85 QFRKLALSLHPDKNKAI----GADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 85 aYRkLal~~HPDkn~~~----~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
||||||++||||-..+. .|+.+|..|..|-+||+||++|+.||...++-.
T Consensus 414 AYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD 467 (504)
T KOG0624|consen 414 AYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLD 467 (504)
T ss_pred HHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCC
Confidence 99999999999988764 488999999999999999999999999877644
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.4e-17 Score=173.50 Aligned_cols=132 Identities=23% Similarity=0.280 Sum_probs=100.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCCCCC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQPGV 144 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (779)
.|||+||||+++|+..|||+||++||++||||.|...+|.+.|+.|.+||+||+|++||..||..+..+. +
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~--------~- 113 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH--------G- 113 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc--------c-
Confidence 4999999999999999999999999999999999999999999999999999999999999999997531 0
Q ss_pred CccCCCCCCCCCCCCCCChhhhcccccCCCCCCcccccccCCCCCCCccccccccccccccccCCCCCCCCCCCCcCCCC
Q 004014 145 SFASSGTNGIHTSTKNATSQARARNDATRTSSTTQAGVSFASPSANGIHRFTKNVTSQTKARNNATGTSSTSVPSSNQNP 224 (779)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F~~~f~~fg~gG~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 224 (779)
.+.+++...|..+|++. .. + --++.+......
T Consensus 114 -------------~~~g~~~~~~~~~~~~~-----------------~~-------------~-----~~~~~~~~~d~~ 145 (288)
T KOG0715|consen 114 -------------EFGGNPFDVFLEFFGGK-----------------MN-------------K-----RVPDKDQYYDLS 145 (288)
T ss_pred -------------cccCCccchHHHhhccc-----------------cc-------------c-----cccCcccccccc
Confidence 00012223333333320 00 0 001234455678
Q ss_pred cceeeeccccceeEEEeeeeeCCccCCCccccce
Q 004014 225 GTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAF 258 (779)
Q Consensus 225 ~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f 258 (779)
+.|.++-.||++++.|... -.|..|....
T Consensus 146 ~~f~~A~~g~~~~~~~~~~-----~~~~t~~~~~ 174 (288)
T KOG0715|consen 146 LDFKEAVRGSKKRISFNVL-----SDCETCFGSG 174 (288)
T ss_pred cCHHHHhhccccceEEEee-----cccccccCcC
Confidence 9999999999888888554 4799998887
No 37
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.2e-16 Score=167.16 Aligned_cols=118 Identities=32% Similarity=0.449 Sum_probs=105.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHHHHHHHHhh
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQFRKLA 90 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLa 90 (779)
++.+|+.++..++|.+|++++.+|..+.-+ ..+.++|..+..-| +.++..|||.||||.+.|++.+|||+||++|
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL----kkSkRkd~ykilGi~~~as~~eikkayrk~A 398 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL----KKSKRKDWYKILGISRNASDDEIKKAYRKLA 398 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH----HHhhhhhHHHHhhhhhhcccchhhhHHHHHH
Confidence 456789999999999999999999999999 57888888887755 5567899999999999999999999999999
Q ss_pred hhhCCCCCCC--CCchHHHHHHHHHHHHhcchhhHHHhhhcCCcc
Q 004014 91 LSLHPDKNKA--IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPR 133 (779)
Q Consensus 91 l~~HPDkn~~--~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (779)
|.+|||++.. ..++..|+.|.+||.||+|+.+|..||..-...
T Consensus 399 L~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle 443 (486)
T KOG0550|consen 399 LVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE 443 (486)
T ss_pred HHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence 9999999974 468899999999999999999999999876543
No 38
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.59 E-value=1.2e-15 Score=127.48 Aligned_cols=62 Identities=39% Similarity=0.671 Sum_probs=59.7
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCC--chHHHHHHHHHHHHhcchhhHHHhh
Q 004014 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG--ADGAFKLVSEAWSLLSDKAKRLAYN 127 (779)
Q Consensus 66 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~--a~~~F~~I~eAy~vLsD~~kR~~YD 127 (779)
|||+||||+++++.++||++|++|++.+|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999998766 8899999999999999999999998
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-15 Score=157.70 Aligned_cols=71 Identities=37% Similarity=0.550 Sum_probs=67.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
..|+|+||||+++|+.++|||+||+|++++|||++++ +.+.++|++|++||+||+||.+|..||.+|..++
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 5789999999999999999999999999999999997 7899999999999999999999999999988766
No 40
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-15 Score=159.81 Aligned_cols=71 Identities=37% Similarity=0.597 Sum_probs=67.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNK-AIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
..|||+||||+..|+..+|+||||+.||++|||||+ ++.|.+.|+.|.+||+||+|+.+|..||..+..+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 679999999999999999999999999999999999 47899999999999999999999999999998655
No 41
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3e-15 Score=164.62 Aligned_cols=72 Identities=35% Similarity=0.560 Sum_probs=66.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC--CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 63 GEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA--IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~--~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
..++||+||||.+.|++.+||++||+|||+||||||+. ..|.+.|++|+.||+|||||..|+.||..+..-+
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 34789999999999999999999999999999999986 4678899999999999999999999999887555
No 42
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.4e-15 Score=163.24 Aligned_cols=71 Identities=31% Similarity=0.513 Sum_probs=66.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCC----CchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAI----GADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~----~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
+.|||.+|+|+++|++++||+||||+++.+||||..++ .|++.|.+|.+||+|||||.+|+.||.+|..++
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 46999999999999999999999999999999999864 488999999999999999999999999998877
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.53 E-value=7.7e-15 Score=173.20 Aligned_cols=72 Identities=26% Similarity=0.315 Sum_probs=67.8
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 63 GEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
...|||+||||+++|+..+||+|||+||+++|||+++...|.++|+.|++||+|||||.+|+.||++|..+.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 568999999999999999999999999999999999877788999999999999999999999999987654
No 44
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.1e-14 Score=147.57 Aligned_cols=194 Identities=20% Similarity=0.192 Sum_probs=124.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCC--CchHHHHHHHHHHHHhcchhhHHHhhhcCCccCCCCCCCC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAI--GADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRGQQKYPAQ 141 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~--~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~ 141 (779)
..|||+||+|.+.|+..+|++|||+||+.+|||+|+.. .++.+|++|.+||++|+|+.+|..||+++...... .
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~-~--- 77 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKG-G--- 77 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccccc-C---
Confidence 46999999999999999999999999999999999877 56668999999999999999999999999843321 0
Q ss_pred CCCCccCCCCCCCCCCCCCCChhhhcccccCCCCCCccc------------ccccCCCC-CCCccccccccccccccccC
Q 004014 142 PGVSFASSGTNGIHTSTKNATSQARARNDATRTSSTTQA------------GVSFASPS-ANGIHRFTKNVTSQTKARNN 208 (779)
Q Consensus 142 ~~~~~~~~~~~g~~~~~~~~~~~~~f~~ffg~~~p~s~F------------~~~f~~fg-~gG~~~~~~~~~~~~~~~~r 208 (779)
+........ + ..+.....+...|..|||...+.+.+ ...|..++ ..... . .. ...+...-
T Consensus 78 -~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~ 150 (306)
T KOG0714|consen 78 -GSFSSSFTS-E-LFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSL--Y-GP-KRKQYDSS 150 (306)
T ss_pred -CCCCCCCCC-C-cceeccCchhhhHHHHhCCCCCCccccccCCccccccCcccccccccccccc--C-CC-cccccccc
Confidence 000011011 1 11223345677788888866663322 01111111 00000 0 00 00000000
Q ss_pred C-CCCCCCCCCCcCCCCcceeeeccccceeEEEeeeeeCCccCCCccccceEEEEcCCCCC
Q 004014 209 A-TGTSSTSVPSSNQNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCHEAFLAVEKPPPSN 268 (779)
Q Consensus 209 ~-~~~~~~~~~~~~~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~~~f~Avev~pp~~ 268 (779)
. .......++..+...+++.+++.+|.+.+.+.|........+..=...++.+.+.++|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (306)
T KOG0714|consen 151 GSDRSARQSPPVEHPLRVSLEDLYKGESKKMKISRQSFTSNGREGSSRSRYLSISIKPGWK 211 (306)
T ss_pred cccccccCCCCccCCcceeHHHhccccceeeecccccccCCcccccCccceeEEeccCCcc
Confidence 0 00011123355566679999999999999999998877777755566777777777654
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.9e-14 Score=145.49 Aligned_cols=71 Identities=38% Similarity=0.635 Sum_probs=65.4
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC---CCchHHHHHHHHHHHHhcchhhHHHhhhcCCcc
Q 004014 63 GEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA---IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPR 133 (779)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~---~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (779)
+..|+|+||||.++|++.+|++|||+|||++|||+++. ..+...|+.|+.||.||+|.++|+.||..|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 45799999999999999999999999999999999963 457889999999999999999999999988754
No 46
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-13 Score=138.28 Aligned_cols=73 Identities=32% Similarity=0.621 Sum_probs=68.5
Q ss_pred cCCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 62 NGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
....|+|+||||+++|++.|||||||+|++++||||++. .+.++.|..|++||+.|+|+..|..|..+|++.+
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 357899999999999999999999999999999999998 6678889999999999999999999999999765
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.44 E-value=9.9e-14 Score=114.12 Aligned_cols=57 Identities=42% Similarity=0.668 Sum_probs=53.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCC--CCCchHHHHHHHHHHHHhcchh
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNK--AIGADGAFKLVSEAWSLLSDKA 121 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~--~~~a~~~F~~I~eAy~vLsD~~ 121 (779)
.|||+||||+++++.++||++||+|++.+|||++. ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998 5678899999999999999985
No 48
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.41 E-value=2.5e-13 Score=109.70 Aligned_cols=54 Identities=50% Similarity=0.820 Sum_probs=51.5
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCchHHHHHHHHHHHHhcc
Q 004014 66 DWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA-IGADGAFKLVSEAWSLLSD 119 (779)
Q Consensus 66 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~a~~~F~~I~eAy~vLsD 119 (779)
|||+||||++.++.++||++||+|++.+|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999987 6788999999999999986
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.38 E-value=4.8e-13 Score=155.34 Aligned_cols=70 Identities=37% Similarity=0.562 Sum_probs=66.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
.|||+||||+++|+..+||++||+|++++|||++....+..+|+.|++||++|+|+.+|+.||.++..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 5999999999999999999999999999999999887788899999999999999999999999987544
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.3e-13 Score=133.36 Aligned_cols=67 Identities=40% Similarity=0.670 Sum_probs=63.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCC--chHHHHHHHHHHHHhcchhhHHHhhhcC
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG--ADGAFKLVSEAWSLLSDKAKRLAYNEKL 130 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~--a~~~F~~I~eAy~vLsD~~kR~~YD~~~ 130 (779)
..|||.||||.++|+..+|+++||+||+++|||+++... +++.|+.|++||++|+|+.+|..||+.+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 479999999999999999999999999999999998654 8999999999999999999999999974
No 51
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.2e-12 Score=144.44 Aligned_cols=70 Identities=34% Similarity=0.527 Sum_probs=67.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCc
Q 004014 63 GEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNP 132 (779)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~ 132 (779)
..+|.|.||||+.++++++|||.|||+|.+.|||||..+.|+++|+.|.-||++|+|+.+|..||.....
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999988754
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.31 E-value=2e-12 Score=126.75 Aligned_cols=67 Identities=19% Similarity=0.312 Sum_probs=61.4
Q ss_pred CCchhhcCCCCCC--CHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 65 VDWYAILGTNPWV--DDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 65 ~D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
..+|+||||+++| +..+||+|||++|+++||||+ +.+++|+.|++||++|+|+.+|..||.++....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 3579999999999 999999999999999999996 457899999999999999999999999987543
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=2.3e-11 Score=121.74 Aligned_cols=67 Identities=22% Similarity=0.434 Sum_probs=59.4
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC------chHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 65 VDWYAILGTNPW--VDDETVRKQFRKLALSLHPDKNKAIG------ADGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 65 ~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~------a~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
.|||+||||++. +|..+|+++||+|++++|||+..... +...|..|++||++|+||.+|+.|+....
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999996 68899999999999999999986532 45679999999999999999999997665
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.1e-11 Score=125.89 Aligned_cols=70 Identities=27% Similarity=0.513 Sum_probs=66.8
Q ss_pred cCCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 62 NGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
-|..|.|+||||.+.|+..+|.||||+||+++|||+++.+.+.+.|+.|..||++|.|.+.|..||-...
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 3678999999999999999999999999999999999999899999999999999999999999998876
No 55
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=3.6e-11 Score=119.80 Aligned_cols=67 Identities=27% Similarity=0.386 Sum_probs=58.8
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC----chHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 65 VDWYAILGTNPW--VDDETVRKQFRKLALSLHPDKNKAIG----ADGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 65 ~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~----a~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
.|||+||||++. +|..+|+++||+|++++|||++.... +...|..|++||++|+||.+|+.|+....
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999996 78999999999999999999986421 23457899999999999999999998875
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=1e-10 Score=117.27 Aligned_cols=69 Identities=25% Similarity=0.371 Sum_probs=61.5
Q ss_pred CCCCchhhcCCCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC------chHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 63 GEVDWYAILGTNPW--VDDETVRKQFRKLALSLHPDKNKAIG------ADGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 63 ~~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~------a~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
+..|||++|||++. .+..+|+++||+|++++|||++.... +...|..|++||++|+||.+|+.|+....
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 46899999999997 67899999999999999999986533 45679999999999999999999998775
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.09 E-value=3.6e-10 Score=120.56 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=74.2
Q ss_pred HHHHHccCHHHHHHHHHH--HHhhCCChHHHHHHHHHHHHHHHHHh--------h---hcCCCCchhhcCCCCCCCHHHH
Q 004014 16 ERKLTEKNYAGAKKFALK--AQNLYPGLEGISQMLMTIDVYIAAEK--------K---VNGEVDWYAILGTNPWVDDETV 82 (779)
Q Consensus 16 ek~l~~~D~~gA~r~a~K--Aq~L~p~l~~i~qll~~~~v~~aa~~--------~---~~~~~D~Y~ILgV~~~A~~~eI 82 (779)
..++++|.++.+.+.+++ |.-|.-+.....+++..+........ + .....|+|+||||++++|.++|
T Consensus 138 ~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eI 217 (267)
T PRK09430 138 QAAFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEI 217 (267)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHH
Confidence 445566777766666655 55555555555555555443211100 0 1123699999999999999999
Q ss_pred HHHHHHhhhhhCCCCCCCC--------CchHHHHHHHHHHHHhcc
Q 004014 83 RKQFRKLALSLHPDKNKAI--------GADGAFKLVSEAWSLLSD 119 (779)
Q Consensus 83 KkaYRkLal~~HPDkn~~~--------~a~~~F~~I~eAy~vLsD 119 (779)
|++||+|++++|||++... .+.++|+.|++||++|+.
T Consensus 218 k~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 218 KRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997542 367899999999999975
No 58
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.08 E-value=1.7e-10 Score=116.07 Aligned_cols=68 Identities=26% Similarity=0.418 Sum_probs=58.9
Q ss_pred CCCchhhcCCCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC-c-----hHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 64 EVDWYAILGTNPW--VDDETVRKQFRKLALSLHPDKNKAIG-A-----DGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 64 ~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~-a-----~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
..|||+||||++. ++..+|+++||+|++++|||++.... + .+.+..|++||.+|+||.+|+.|+....
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4799999999995 68999999999999999999987432 2 2346899999999999999999998665
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.96 E-value=6.8e-10 Score=104.08 Aligned_cols=52 Identities=33% Similarity=0.464 Sum_probs=48.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhc
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLS 118 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLs 118 (779)
..++|+||||+++|+.++||++||+|++++|||+. +..+.|+.|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999984 67789999999999995
No 60
>PHA02624 large T antigen; Provisional
Probab=98.86 E-value=2e-09 Score=124.46 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=56.4
Q ss_pred CCchhhcCCCCCC--CHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHh
Q 004014 65 VDWYAILGTNPWV--DDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAY 126 (779)
Q Consensus 65 ~D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~Y 126 (779)
.++|+||||+++| +..+||+|||+||+++|||+. +++++|+.|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 5899999999999 999999999999999999995 5688999999999999999999999
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.82 E-value=3.6e-09 Score=116.66 Aligned_cols=72 Identities=29% Similarity=0.534 Sum_probs=66.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC------CCchHHHHHHHHHHHHhcchhhHHHhhhcCCccC
Q 004014 63 GEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA------IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNPRG 134 (779)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~------~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (779)
...|+|+||||+.+++..+||++||+|+.++||||.+. ..-++.++.|++||+.|+|...|..|-.+|.+..
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 56899999999999999999999999999999999875 2357889999999999999999999999998765
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.5e-09 Score=104.46 Aligned_cols=64 Identities=34% Similarity=0.587 Sum_probs=58.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCC--CCchHHHHHHHHHHHHhcchhhHHHhh
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKA--IGADGAFKLVSEAWSLLSDKAKRLAYN 127 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~--~~a~~~F~~I~eAy~vLsD~~kR~~YD 127 (779)
+.|+|+||+|.|..+.++||+.||+|+++.|||||++ +.|..+|-.|..||.+|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5899999999999999999999999999999999996 578999999999999999998665443
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.66 E-value=3.9e-08 Score=98.76 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC------chHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 65 VDWYAILGTNPW--VDDETVRKQFRKLALSLHPDKNKAIG------ADGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 65 ~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~------a~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
.|||++|||++. .|...++++||+|.+.+|||+....+ +...-.+||+||.+|.||-+|+.|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 599999999996 89999999999999999999987644 34468999999999999999999987765
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.54 E-value=1e-07 Score=94.37 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHhhhhhCCCCCCCCC------chHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 77 VDDETVRKQFRKLALSLHPDKNKAIG------ADGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 77 A~~~eIKkaYRkLal~~HPDkn~~~~------a~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
.|..+|+++||+|++++|||+....+ +...|..|++||++|+||.+|+.|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 47889999999999999999976432 56789999999999999999999998876
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.8e-07 Score=97.82 Aligned_cols=70 Identities=34% Similarity=0.490 Sum_probs=62.6
Q ss_pred CCCCchhhcCCCC---CCCHHHHHHHHHHhhhhhCCCCCCC---CCchHHHHHHHHHHHHhcchhhHHHhhhcCCc
Q 004014 63 GEVDWYAILGTNP---WVDDETVRKQFRKLALSLHPDKNKA---IGADGAFKLVSEAWSLLSDKAKRLAYNEKLNP 132 (779)
Q Consensus 63 ~~~D~Y~ILgV~~---~A~~~eIKkaYRkLal~~HPDkn~~---~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~~ 132 (779)
+..|+|.+|||+. -|++.+|.++.++..+.||||+... .+..+.|++|+.||+||+|+.+|..||.-...
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 5589999999986 5889999999999999999999853 56789999999999999999999999976543
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=5.2e-05 Score=90.85 Aligned_cols=54 Identities=33% Similarity=0.397 Sum_probs=46.2
Q ss_pred CCCchhhcCCCCC----CCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcc
Q 004014 64 EVDWYAILGTNPW----VDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSD 119 (779)
Q Consensus 64 ~~D~Y~ILgV~~~----A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD 119 (779)
..+-|+||.|+.+ -+.+.||+||+|||.+||||||+ ..-+.|..|++||+.|+.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHH
Confidence 3567999999863 34589999999999999999995 456899999999999983
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=5.7e-05 Score=77.94 Aligned_cols=57 Identities=30% Similarity=0.532 Sum_probs=52.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHH-Hhcch
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWS-LLSDK 120 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~-vLsD~ 120 (779)
-+.+|.||||..+|+.++++.+|.+|++++|||........++|..|.+||. ||+..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999888888899999999999 77643
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0013 Score=60.96 Aligned_cols=49 Identities=29% Similarity=0.497 Sum_probs=43.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcch
Q 004014 69 AILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDK 120 (779)
Q Consensus 69 ~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~ 120 (779)
-||||.++++.+.||.++||+-+..|||+..+ .-.-..|+||+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS---PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGS---PYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCC---HHHHHHHHHHHHHHhcc
Confidence 39999999999999999999999999999644 45567899999999754
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.21 E-value=0.0051 Score=70.76 Aligned_cols=69 Identities=30% Similarity=0.495 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCC--------chHHHHHHHHH
Q 004014 42 EGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG--------ADGAFKLVSEA 113 (779)
Q Consensus 42 ~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~--------a~~~F~~I~eA 113 (779)
.+|+.||..+...|-.+ .=++=++|..-.+.+.|||+|||..|.+||||.+..| |++.|-.+++|
T Consensus 372 ~NIRALLSTLh~VLW~e-------s~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~ea 444 (453)
T KOG0431|consen 372 GNIRALLSTLHYVLWPE-------SGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEA 444 (453)
T ss_pred ccHHHHHHHHhHhhcCc-------cCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHH
Confidence 35667777666544221 1234446666779999999999999999999998765 44557777777
Q ss_pred HHHh
Q 004014 114 WSLL 117 (779)
Q Consensus 114 y~vL 117 (779)
|...
T Consensus 445 wn~f 448 (453)
T KOG0431|consen 445 WNKF 448 (453)
T ss_pred HHhh
Confidence 7643
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.015 Score=58.58 Aligned_cols=54 Identities=30% Similarity=0.474 Sum_probs=46.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCC--------chHHHHHHHHHHHHh
Q 004014 64 EVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIG--------ADGAFKLVSEAWSLL 117 (779)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~--------a~~~F~~I~eAy~vL 117 (779)
..|.|.+|++...++..+|+++||++....|||+-...+ +.+.++.|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 379999999999999999999999999999999976533 667788888888753
No 71
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.015 Score=57.34 Aligned_cols=70 Identities=21% Similarity=0.397 Sum_probs=56.0
Q ss_pred cCCCCchhhcCCCCC--CCHHHHHHHHHHhhhhhCCCCCCCC------CchHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 62 NGEVDWYAILGTNPW--VDDETVRKQFRKLALSLHPDKNKAI------GADGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 62 ~~~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDkn~~~------~a~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
....+||.|+|.... .++.-++--|.-...++|||+.... -|.+....|++||.+|.||-+|+.|=....
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 345799999987653 4666666688899999999995421 256779999999999999999999987765
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=0.13 Score=51.91 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=52.4
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHhhhhhCCCCCCCCCc------hHHHHHHHHHHHHhcchhhHHHhhhcCC
Q 004014 66 DWYAILGTNPWV--DDETVRKQFRKLALSLHPDKNKAIGA------DGAFKLVSEAWSLLSDKAKRLAYNEKLN 131 (779)
Q Consensus 66 D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDkn~~~~a------~~~F~~I~eAy~vLsD~~kR~~YD~~~~ 131 (779)
||+..+|+.+.+ +.+.++..|+.+.+.+|||+....+. -..+..++.||.+|.||-+|..|=....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 455556666544 45678999999999999999876543 3468899999999999999999977665
No 73
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.49 E-value=1.5 Score=31.12 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPG 40 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~ 40 (779)
|+-+..+|..++..+++..|++.+.+|.+++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 445677899999999999999999999999996
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.31 E-value=2.6 Score=47.16 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHHH
Q 004014 4 NKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVR 83 (779)
Q Consensus 4 Nk~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eIK 83 (779)
|..++++-+++..+.|..+.+..|+..+..|..++|+. -..+...+.+++|.......-.|+-.||.+.|+..-+-|.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~--Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN--YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 67899999999999999999999999999999999985 4457778889998877666778999999999987666665
Q ss_pred HHH--------------HHhhhhhCCCCCCCCCchHHHHHHHHHHHH
Q 004014 84 KQF--------------RKLALSLHPDKNKAIGADGAFKLVSEAWSL 116 (779)
Q Consensus 84 kaY--------------RkLal~~HPDkn~~~~a~~~F~~I~eAy~v 116 (779)
+.- -+..+++.|.-+....+..+..+|.+.|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 542 223455555544444455556666665543
No 75
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=86.32 E-value=1.3 Score=46.57 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=44.4
Q ss_pred CCCCeEEEecC---------CCCCccceeEEEEeee--cCCceEEEEecccCCCCCCCccceecCCceeeeeeeEeCcee
Q 004014 528 GDDQVWAAYDD---------DDGMPRYYARIHKVIS--LKPFKMKISWLNSRSNSEFGPVRWVDSGFSKTCGDFRSGRHE 596 (779)
Q Consensus 528 ~~gQIWA~Yd~---------~DgmPR~Ya~I~kV~~--~~pFkl~iswLe~~~~~e~~~~~W~~~~~pv~CG~F~~~~~~ 596 (779)
+.|.|||||-+ .|-.+.-|..+. |++ ...--+.|..|.-..-.. ....+...+- .+.|.|.+.
T Consensus 124 rkGEvWAlYknW~~~w~~~~~~~~~~~YdiVE-Vl~d~~~~~gi~V~~L~Kv~Gf~-svF~~~~~~~---~~~~~Ip~~- 197 (217)
T PF11926_consen 124 RKGEVWALYKNWSPDWSSSTDDERKYEYDIVE-VLSDYSEEAGIKVAPLVKVKGFK-SVFKRAEEGG---EAVFTIPKS- 197 (217)
T ss_pred CcccEeEEecCCCCCCCcCcCcCcccceEEEE-EeecCCccCcEEEEEEEEecCcE-eeeeecCCCC---cceEEEChH-
Confidence 67999999965 255566676664 545 334577888886532211 1112211111 345666554
Q ss_pred eecccceeEEEeEeee
Q 004014 597 ISETLNAFSHKVKWTK 612 (779)
Q Consensus 597 ~~~~~~~FSH~v~~~~ 612 (779)
.+..|||+|-..+
T Consensus 198 ---E~~RFSHqIPa~r 210 (217)
T PF11926_consen 198 ---ELLRFSHQIPAFR 210 (217)
T ss_pred ---HcCeeeccCCCEE
Confidence 3679999998544
No 76
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.09 E-value=2.2 Score=32.87 Aligned_cols=39 Identities=15% Similarity=-0.005 Sum_probs=34.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLM 49 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~ 49 (779)
+..+|..++..|+++.|.+.+.++.+++|....+...|.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 567899999999999999999999999999877665554
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.79 E-value=2.4 Score=34.95 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 004014 7 EAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTI 51 (779)
Q Consensus 7 EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~ 51 (779)
.|.-+..+|..++..++++.|+..+.+|.+++|+...+-..+..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~ 46 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLA 46 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 578889999999999999999999999999999986654444433
No 78
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.57 E-value=2.9 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPG 40 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~ 40 (779)
|.-+..+|...+..++++.|+..+.+|.+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 455778999999999999999999999999996
No 79
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=81.93 E-value=2.9 Score=40.59 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=40.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhH
Q 004014 68 YAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKR 123 (779)
Q Consensus 68 Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR 123 (779)
..||+|++..+.++|.+.|.+|-...+|++. |..-.-..|..|.+.|...-+.
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999975 6677778899999988765543
No 80
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=80.39 E-value=0.77 Score=34.65 Aligned_cols=33 Identities=21% Similarity=0.579 Sum_probs=26.2
Q ss_pred eeccccceeEEEeeeeeCC---ccCCCccccceEEE
Q 004014 229 TICNKCRTQYEYLRIYLNN---TLLCPNCHEAFLAV 261 (779)
Q Consensus 229 tic~GC~kk~ey~R~~ln~---~l~C~~C~~~f~Av 261 (779)
-.|+.|..+|.+...-+.. .++|++|+..|.++
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 3599999999998765533 37999999999874
No 81
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=75.28 E-value=2.1 Score=52.19 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=34.2
Q ss_pred CCcCCCCcceeeeccccceeEEEeeeeeCCccCCCccc--cceEEEEcCCCC
Q 004014 218 PSSNQNPGTFWTICNKCRTQYEYLRIYLNNTLLCPNCH--EAFLAVEKPPPS 267 (779)
Q Consensus 218 ~~~~~~~~TFwtic~GC~kk~ey~R~~ln~~l~C~~C~--~~f~Avev~pp~ 267 (779)
++...+.+||+++|.||++++.|.|.+++..+. .|. ...+.|.|++|+
T Consensus 658 dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~--ktvkE~ktLeVkIPpGV 707 (871)
T TIGR03835 658 NLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTE--STTNEAITLEIQLPITS 707 (871)
T ss_pred ceEEecccCHHHHhCCCeEEEEEEEeeccCCCc--ceeeeeEEEEEecCCCC
Confidence 456667899999999999999999987631110 111 346778887774
No 82
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.63 E-value=8.3 Score=40.56 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChH
Q 004014 4 NKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLE 42 (779)
Q Consensus 4 Nk~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~ 42 (779)
++++|.+++.-...+|..|||.+|..-|..|..+||++.
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~ 129 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS 129 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc
Confidence 689999999999999999999999999999999999974
No 83
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.02 E-value=13 Score=39.26 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHHHHH
Q 004014 6 DEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQ 85 (779)
Q Consensus 6 ~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eIKka 85 (779)
+.++-+..+|..+|..+.+..|...+-||..|.|+.. ..|+..+..|-..+..-..-.||-.||.+.|.-. +.+++
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAeayek~ek~eealeDyKki~E~dPs~~--ear~~ 207 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAEAYEKMEKYEEALEDYKKILESDPSRR--EAREA 207 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH--HHHHH
Confidence 3355566778999999999999999999999999984 4566666666544433344579999999988654 55666
Q ss_pred HHHh
Q 004014 86 FRKL 89 (779)
Q Consensus 86 YRkL 89 (779)
-++|
T Consensus 208 i~rl 211 (271)
T KOG4234|consen 208 IARL 211 (271)
T ss_pred HHhc
Confidence 6654
No 84
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.57 E-value=23 Score=29.17 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=36.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q 004014 12 KEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIA 56 (779)
Q Consensus 12 ~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~a 56 (779)
--+|...+..++|..|++++..+.++.|.......|...++-.+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 457888899999999999999999999999888888887776543
No 85
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.53 E-value=10 Score=37.31 Aligned_cols=61 Identities=16% Similarity=0.100 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCch
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWY 68 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y 68 (779)
+.++++.|++++..+|+.-|..++..+...+|.....++|.+.+-..++.+..-...++||
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~Rn~y 130 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANWRNYY 130 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3567778999999999999999999999999999888888887766665544333334555
No 86
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=66.77 E-value=12 Score=30.47 Aligned_cols=41 Identities=17% Similarity=0.028 Sum_probs=34.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 004014 13 EIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDV 53 (779)
Q Consensus 13 ~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v 53 (779)
..|..++..|+++.|.+.+.++.+.+|....+..++..+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56889999999999999999999999997766655555443
No 87
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=66.06 E-value=55 Score=36.72 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 004014 9 ARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMT 50 (779)
Q Consensus 9 ~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~ 50 (779)
-.++..|..++..++|+.|+..+.+|.++.|....+...++.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~ 44 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQ 44 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 457888999999999999999999999999998665544443
No 88
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=63.82 E-value=5.7 Score=43.94 Aligned_cols=55 Identities=24% Similarity=0.441 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHhhhhhCCCCCC-----CCCchHHHHHHHHHHHHhcchhhHHHhhhcC
Q 004014 76 WVDDETVRKQFRKLALSLHPDKNK-----AIGADGAFKLVSEAWSLLSDKAKRLAYNEKL 130 (779)
Q Consensus 76 ~A~~~eIKkaYRkLal~~HPDkn~-----~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~~ 130 (779)
.++...|+.+|+..++.+||++-. ....++.|++|.+||+||.+..+|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 367789999999999999999874 2346677999999999999977766666554
No 89
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.50 E-value=28 Score=38.47 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChH
Q 004014 4 NKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLE 42 (779)
Q Consensus 4 Nk~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~ 42 (779)
++..|+++|.-..++|+.++|..|+..+.+|..|.|+..
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 789999999999999999999999999999999999974
No 90
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.78 E-value=8.7 Score=35.32 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=29.7
Q ss_pred ccccCCCCCCCeEEEecCCCCCccceeEEEEeeecCCce
Q 004014 521 DRTESSFGDDQVWAAYDDDDGMPRYYARIHKVISLKPFK 559 (779)
Q Consensus 521 ~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~~~pFk 559 (779)
|.+|+.|++|+|-++|-.+|+ ||+|-|+ |+++.|..
T Consensus 27 D~SEShf~~g~vlrV~r~Ed~--~~fc~I~-vl~vspvt 62 (106)
T COG3097 27 DKSESHFKPGDVLRVGRFEDD--RYFCTIE-VLAVSPVT 62 (106)
T ss_pred ccchhcCCCCCEEEEEEecCC--cEEEEEE-EEEeccEe
Confidence 469999999999999987776 8999996 55777743
No 91
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=62.74 E-value=14 Score=26.09 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYP 39 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p 39 (779)
|.-+..+|..+...+|++.|...+.+|.++.|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34466789999999999999999999999887
No 92
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=61.53 E-value=16 Score=30.28 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=23.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 004014 15 AERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMT 50 (779)
Q Consensus 15 Aek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~ 50 (779)
+..++..+||+.|.+.+.++..+.|....+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 37 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRAR 37 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 455677777777777777777777776544433333
No 93
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=60.77 E-value=6.7 Score=32.26 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q 004014 4 NKDEAARAKEIAERKLTEK-NYAGAKKFALKAQNLYP 39 (779)
Q Consensus 4 Nk~EA~ra~~iAek~l~~~-D~~gA~r~a~KAq~L~p 39 (779)
|.+.+.-+..+|..++..+ ++..|++++.+|..+.|
T Consensus 33 ~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 33 DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445666677888899999 79999999999999988
No 94
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=60.53 E-value=18 Score=34.49 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=34.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDV 53 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v 53 (779)
+..+++.++..+++..|.+.+.++..++|..+.+.+.+..+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~ 107 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA 107 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456778888999999999999999999999988776665543
No 95
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=59.18 E-value=16 Score=29.74 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=23.9
Q ss_pred HHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 004014 18 KLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTID 52 (779)
Q Consensus 18 ~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~ 52 (779)
+|..|+++.|.+.+.++...+|....+...+..+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 35 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCY 35 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46677788888888888888887665555444443
No 96
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=58.06 E-value=4.8 Score=30.60 Aligned_cols=31 Identities=26% Similarity=0.675 Sum_probs=25.2
Q ss_pred eeccccceeEEEeeeee---CCccCCCccccceE
Q 004014 229 TICNKCRTQYEYLRIYL---NNTLLCPNCHEAFL 259 (779)
Q Consensus 229 tic~GC~kk~ey~R~~l---n~~l~C~~C~~~f~ 259 (779)
..|+.|...|++.-.-| ...++|++|+..|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 56999999999877643 45678999999885
No 97
>PRK05685 fliS flagellar protein FliS; Validated
Probab=57.37 E-value=39 Score=32.76 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 6 DEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 6 ~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
|.|++.+..|..++..+|+..+...+.||+.+.-.|
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL 68 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGL 68 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999998876554
No 98
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=53.70 E-value=22 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPG 40 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~ 40 (779)
+..+|...+..|+++.|++.+.+....+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 456788899999999999999999999996
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=53.67 E-value=26 Score=28.56 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMT 50 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~ 50 (779)
...+|..++..|+++.|+..+.++....|+.+.+..|++.
T Consensus 28 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4467999999999999999999999999998777777654
No 100
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=52.80 E-value=6.1 Score=29.98 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=22.5
Q ss_pred eccccceeEEEeeeeeC---CccCCCccccce
Q 004014 230 ICNKCRTQYEYLRIYLN---NTLLCPNCHEAF 258 (779)
Q Consensus 230 ic~GC~kk~ey~R~~ln---~~l~C~~C~~~f 258 (779)
.|+.|.++|++.-.-|. ..++|++|+..|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 59999999998766443 347899999877
No 101
>PF13446 RPT: A repeated domain in UCH-protein
Probab=51.91 E-value=29 Score=28.99 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.4
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHhhh
Q 004014 66 DWYAILGTNPWVDDETVRKQFRKLAL 91 (779)
Q Consensus 66 D~Y~ILgV~~~A~~~eIKkaYRkLal 91 (779)
+-|.+|||+++.+++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 34999999999999999999998776
No 102
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=49.22 E-value=32 Score=21.88 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=26.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPG 40 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~ 40 (779)
+..+|..++..+++..|...+.++.++.|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 456788999999999999999999888875
No 103
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.19 E-value=61 Score=30.11 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 004014 5 KDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMT 50 (779)
Q Consensus 5 k~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~ 50 (779)
++.|.++...+-.++..||+..|.+.+.++.+..+. +.+..|+++
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~-~~l~~L~AA 100 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN-PLLNYLLAA 100 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 456889999999999999999999999999888444 456655543
No 104
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.17 E-value=1.1e+02 Score=32.88 Aligned_cols=72 Identities=33% Similarity=0.417 Sum_probs=50.5
Q ss_pred CHHHHHH-HHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHH
Q 004014 4 NKDEAAR-AKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETV 82 (779)
Q Consensus 4 Nk~EA~r-a~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eI 82 (779)
++.+|.. -+++|.-.|+.+|+..|+.-++||.+.+|+......+++. +|.-+|....|+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~----------------~Yq~~Ge~~~A~---- 89 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAH----------------YYQKLGENDLAD---- 89 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH----------------HHHHcCChhhHH----
Confidence 3455444 4678999999999999999999999999998655433332 355555543332
Q ss_pred HHHHHHhhhhhCCCC
Q 004014 83 RKQFRKLALSLHPDK 97 (779)
Q Consensus 83 KkaYRkLal~~HPDk 97 (779)
..|| .|+.+||+.
T Consensus 90 -e~Yr-kAlsl~p~~ 102 (250)
T COG3063 90 -ESYR-KALSLAPNN 102 (250)
T ss_pred -HHHH-HHHhcCCCc
Confidence 3344 478888885
No 105
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=46.32 E-value=37 Score=24.97 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYP 39 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p 39 (779)
+..+|..+...|+|+.|..++++|..+..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999765543
No 106
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=44.34 E-value=6.6 Score=41.16 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHH---HHH----HHHHHHHHHHHHh------------------
Q 004014 5 KDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEG---ISQ----MLMTIDVYIAAEK------------------ 59 (779)
Q Consensus 5 k~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~---i~q----ll~~~~v~~aa~~------------------ 59 (779)
..++.+++.|+..+... ++..|.+.+.++...+++... ... +-.+.+++.....
T Consensus 2 ~~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~ 80 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF 80 (306)
T ss_pred cccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence 46788999999888888 999999999999999886654 111 0001111110000
Q ss_pred ------------hhcCCCCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhh
Q 004014 60 ------------KVNGEVDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYN 127 (779)
Q Consensus 60 ------------~~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD 127 (779)
......+||++||+....+.. .+.|+ |++..++ ...|..+..+..+|.++ .|..||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 148 (306)
T KOG0714|consen 81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQYD 148 (306)
T ss_pred CCCCCCCcceeccCchhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-cccccc
Confidence 000134578888866654433 44444 5665555 77888888899999999 999999
Q ss_pred hcCCccC
Q 004014 128 EKLNPRG 134 (779)
Q Consensus 128 ~~~~~~~ 134 (779)
.......
T Consensus 149 ~~~~~~~ 155 (306)
T KOG0714|consen 149 SSGSDRS 155 (306)
T ss_pred ccccccc
Confidence 8876433
No 107
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.73 E-value=79 Score=35.42 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHh-hhcCCCCchhhcCCCCCCCHHHH
Q 004014 4 NKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEK-KVNGEVDWYAILGTNPWVDDETV 82 (779)
Q Consensus 4 Nk~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~-~~~~~~D~Y~ILgV~~~A~~~eI 82 (779)
|.-||+-|+..|...-.+|..+.|.+++..|..|.|+...+ |..+........ -+....-|.+.|-++|.-+.+-+
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 57899999999999999999999999999999999998643 333332222211 12233446677888886655433
No 108
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=43.11 E-value=35 Score=28.20 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 004014 5 KDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMT 50 (779)
Q Consensus 5 k~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~ 50 (779)
-+...-+...|..++..|++.+|.+.+.++..+.|+...+.++...
T Consensus 26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 26 PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3444555667889999999999999999999999998776655543
No 109
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.92 E-value=45 Score=39.26 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Q 004014 6 DEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYI 55 (779)
Q Consensus 6 ~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~ 55 (779)
..|..++....+.+.++.|+.|.+++..|..|+|+-+-.-+-.++|.+.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~l 162 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESL 162 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHH
Confidence 45888899999999999999999999999999999655555556665543
No 110
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=41.84 E-value=56 Score=26.43 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 7 EAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 7 EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
.+.-+..+|..++..|+++.|...+.++..++|..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34445667899999999999999999999999974
No 111
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.72 E-value=1.3e+02 Score=32.80 Aligned_cols=85 Identities=22% Similarity=0.362 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHHHHHHHHh
Q 004014 10 RAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQFRKL 89 (779)
Q Consensus 10 ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eIKkaYRkL 89 (779)
.+....+.++..+||.+|...+...+.+--++.++. .+ .++.. .-.+++.. ..+.+...+.++
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~---c~--~~L~~-----~L~e~~~~-------i~~~ld~~l~~~ 191 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS---CV--RHLSS-----QLQETLEL-------IEEQLDSDLSKV 191 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch---HH--HHHhH-----HHHHHHHH-------HHHHHHHHHHHH
Confidence 444556788899999999999988777643332221 11 11111 11233433 356777888888
Q ss_pred hhhhCCCCCCCCCchHHHHHHHHHHHHhcch
Q 004014 90 ALSLHPDKNKAIGADGAFKLVSEAWSLLSDK 120 (779)
Q Consensus 90 al~~HPDkn~~~~a~~~F~~I~eAy~vLsD~ 120 (779)
+..+.|+ .|..|.+||..|++.
T Consensus 192 ~~~Fd~~---------~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 192 CQDFDPD---------KYSKVQEAYQLLGKT 213 (291)
T ss_pred HHhCCHH---------HHHHHHHHHHHHhhh
Confidence 8877665 689999999999864
No 112
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.31 E-value=70 Score=33.97 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 3 CNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 3 cNk~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
|+|-...=..++|+.++..||++.|++++.++...|..-
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e 211 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE 211 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Confidence 456667778899999999999999999999998777754
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=38.76 E-value=68 Score=35.96 Aligned_cols=81 Identities=19% Similarity=0.058 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCC--HHHHHHH
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVD--DETVRKQ 85 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~--~~eIKka 85 (779)
+.-+..+|..++..++++.|+.++.+|..+.|....+...+..+...+ ...-.....|-..|.+.+.-. ..-|.+.
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l--g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL--EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 444567789999999999999999999999999766554444433222 111111234445566665432 2344555
Q ss_pred HHHhh
Q 004014 86 FRKLA 90 (779)
Q Consensus 86 YRkLa 90 (779)
..+|.
T Consensus 114 ~~kl~ 118 (356)
T PLN03088 114 DEKIA 118 (356)
T ss_pred HHHHH
Confidence 55553
No 114
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.51 E-value=53 Score=37.70 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=52.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHHHHHHHHhhh
Q 004014 12 KEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQFRKLAL 91 (779)
Q Consensus 12 ~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal 91 (779)
+.+|-.++..++|..|+....++..+.|.- +..|...-..+++....-....||-++|.|.|+- .+|+.+..+|..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~~el~~l~~ 336 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAARAELIKLKQ 336 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Confidence 356778888999999999999999999985 4445555555544333223345777788877754 666666666655
Q ss_pred hh
Q 004014 92 SL 93 (779)
Q Consensus 92 ~~ 93 (779)
++
T Consensus 337 k~ 338 (397)
T KOG0543|consen 337 KI 338 (397)
T ss_pred HH
Confidence 54
No 115
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=37.33 E-value=22 Score=28.00 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=24.2
Q ss_pred eeccccceeEEEeeeeeCCccCCCccccceEE
Q 004014 229 TICNKCRTQYEYLRIYLNNTLLCPNCHEAFLA 260 (779)
Q Consensus 229 tic~GC~kk~ey~R~~ln~~l~C~~C~~~f~A 260 (779)
-.|..|...+.+..... ..+|+.|+.+++.
T Consensus 4 y~C~~CG~~~~~~~~~~--~~~Cp~CG~~~~~ 33 (46)
T PRK00398 4 YKCARCGREVELDEYGT--GVRCPYCGYRILF 33 (46)
T ss_pred EECCCCCCEEEECCCCC--ceECCCCCCeEEE
Confidence 36999999999876543 6899999998874
No 116
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.55 E-value=1.1e+02 Score=30.71 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=50.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCChH----HHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCHHHHHHHHHHhh
Q 004014 15 AERKLTEKNYAGAKKFALKAQNLYPGLE----GISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDDETVRKQFRKLA 90 (779)
Q Consensus 15 Aek~l~~~D~~gA~r~a~KAq~L~p~l~----~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLa 90 (779)
-.+.+..+||+.|.+.|.||+.++-... -+..++..++..+..-. ...|+.|.-.+ .+.++..+.-+.|.
T Consensus 93 L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r-----~~l~~~L~~~~-~s~~~~~~~i~~Ll 166 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFR-----EKLWEKLLSPP-SSQEEFLKLIRKLL 166 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence 4567889999999999999999997663 34455555554432221 24455554444 67777777775554
Q ss_pred hhhCCCCC
Q 004014 91 LSLHPDKN 98 (779)
Q Consensus 91 l~~HPDkn 98 (779)
.++|+-+
T Consensus 167 -~L~~~~d 173 (182)
T PF15469_consen 167 -ELNVEED 173 (182)
T ss_pred -hCCCCCC
Confidence 4466544
No 117
>PF14369 zf-RING_3: zinc-finger
Probab=36.52 E-value=29 Score=26.26 Aligned_cols=29 Identities=24% Similarity=0.744 Sum_probs=21.0
Q ss_pred ccccceeEEEeeeeeCCccCCCccccceEE
Q 004014 231 CNKCRTQYEYLRIYLNNTLLCPNCHEAFLA 260 (779)
Q Consensus 231 c~GC~kk~ey~R~~ln~~l~C~~C~~~f~A 260 (779)
|..|.+.+..... ......||.|+..|+.
T Consensus 5 Ch~C~~~V~~~~~-~~~~~~CP~C~~gFvE 33 (35)
T PF14369_consen 5 CHQCNRFVRIAPS-PDSDVACPRCHGGFVE 33 (35)
T ss_pred CccCCCEeEeCcC-CCCCcCCcCCCCcEeE
Confidence 8889988887543 2333459999999974
No 118
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=35.02 E-value=2.3e+02 Score=34.60 Aligned_cols=112 Identities=10% Similarity=0.066 Sum_probs=63.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH----------HHHHhhhcC-CCCchhhcC--CCCCCCH
Q 004014 13 EIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVY----------IAAEKKVNG-EVDWYAILG--TNPWVDD 79 (779)
Q Consensus 13 ~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~----------~aa~~~~~~-~~D~Y~ILg--V~~~A~~ 79 (779)
.+|..++..++++.|...+.+|..+.|....+...+..+... +......+. ...++-.++ +...-..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence 446667788999999999999999999987665444433211 000000111 111221111 1112234
Q ss_pred HHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHh
Q 004014 80 ETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAY 126 (779)
Q Consensus 80 ~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~Y 126 (779)
++-.+.|++ ++..+|+..+. .-.++-..+.+|++.+..+.+|..+
T Consensus 369 deA~~~l~~-al~~~P~~~~~-~~~ea~~~~~~~~~~~~~~~~~~~W 413 (656)
T PRK15174 369 SEAESVFEH-YIQARASHLPQ-SFEEGLLALDGQISAVNLPPERLDW 413 (656)
T ss_pred HHHHHHHHH-HHHhChhhchh-hHHHHHHHHHHHHHhcCCccchhhH
Confidence 444445544 56677886543 3346778888899999888777433
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=34.66 E-value=1.6e+02 Score=26.96 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 004014 4 NKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMT 50 (779)
Q Consensus 4 Nk~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~ 50 (779)
+.+.+.....+|..++..+++..|.+.+.++..++|....+...+..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 59 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAA 59 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44455667788999999999999999999999999987655544443
No 120
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.68 E-value=88 Score=35.97 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDV 53 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v 53 (779)
+-..+..++..++|+.|+.+++||+.+.|.-..|..=|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4456889999999999999999999999999877765555554
No 121
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=32.22 E-value=1e+02 Score=22.20 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
|.-+-.+|..++..+++..|+.++.+|..+.-.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3445678999999999999999999987765443
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=31.37 E-value=1e+02 Score=29.81 Aligned_cols=42 Identities=17% Similarity=-0.060 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLM 49 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~ 49 (779)
+.-+..+|..+...|+++.|...+.+|..+.|.......-+.
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 444567788899999999999999999999998755543333
No 123
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=31.29 E-value=88 Score=32.53 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcch
Q 004014 74 NPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDK 120 (779)
Q Consensus 74 ~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~ 120 (779)
+++|+.+||+.|+.+|..+|- +.+..-..|-.||+.+-=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-------gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-------GDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999983 4467788899999976644
No 124
>PRK11827 hypothetical protein; Provisional
Probab=29.58 E-value=25 Score=29.92 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=23.0
Q ss_pred eccccceeEEEeeeeeCCccCCCccccceEEEEcCCC
Q 004014 230 ICNKCRTQYEYLRIYLNNTLLCPNCHEAFLAVEKPPP 266 (779)
Q Consensus 230 ic~GC~kk~ey~R~~ln~~l~C~~C~~~f~Avev~pp 266 (779)
+|+.|+..+.|... ...+.|..|+..| .|.-|
T Consensus 10 aCP~ckg~L~~~~~--~~~Lic~~~~laY---PI~dg 41 (60)
T PRK11827 10 ACPVCNGKLWYNQE--KQELICKLDNLAF---PLRDG 41 (60)
T ss_pred ECCCCCCcCeEcCC--CCeEECCccCeec---cccCC
Confidence 69999999998653 4568899998554 55444
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=28.62 E-value=1.6e+02 Score=27.06 Aligned_cols=44 Identities=16% Similarity=-0.147 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 004014 9 ARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTID 52 (779)
Q Consensus 9 ~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~ 52 (779)
.-+..+|..++..++++.|...+.++..+.|........+..+.
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34556788888889999999999999999998765555555443
No 126
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.60 E-value=2.6e+02 Score=33.36 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHH
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGI 44 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i 44 (779)
|...+..+...|..+||..|.+.|-+|....|+...+
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 4444455777777777777777777777777776433
No 127
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=27.49 E-value=93 Score=32.67 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=37.1
Q ss_pred ccccccCCCCCCCCcccccCCCCCCCeEEEecCCCCCccceeEEEEeee--------cCCceEEEEec
Q 004014 506 LSINVPDSDFHNFDLDRTESSFGDDQVWAAYDDDDGMPRYYARIHKVIS--------LKPFKMKISWL 565 (779)
Q Consensus 506 ~~~~~pd~dF~dFd~~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~--------~~pFkl~iswL 565 (779)
..+.|-.|++++|+. |....|..|- +.++.|-+-|||.+|+. ...++|++.|+
T Consensus 11 gD~VYv~p~~f~~~~-~~~~~~~~G~------N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwF 71 (202)
T cd04708 11 GDFLYVSPDAFAEEE-RERATFKAGR------NVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRF 71 (202)
T ss_pred CCeEEECcccccccc-cccccccccc------cCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEE
Confidence 346778899999986 5666666664 55666777777777742 12478888998
No 128
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=27.47 E-value=1.3e+02 Score=35.92 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 7 EAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 7 EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
.|..+++.+..++..++|+.|...+.+|..+.|..
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~ 160 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP 160 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence 37788999999999999999999999999999974
No 129
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=26.59 E-value=36 Score=24.14 Aligned_cols=23 Identities=39% Similarity=0.855 Sum_probs=19.0
Q ss_pred ccccceeEEEeeeeeCCccCCCccc
Q 004014 231 CNKCRTQYEYLRIYLNNTLLCPNCH 255 (779)
Q Consensus 231 c~GC~kk~ey~R~~ln~~l~C~~C~ 255 (779)
|.+|.+.+.|.+- ....+|..|+
T Consensus 1 C~~Cr~~L~yp~G--A~sVrCa~C~ 23 (25)
T PF06943_consen 1 CGGCRTLLMYPRG--APSVRCACCH 23 (25)
T ss_pred CCCCCceEEcCCC--CCCeECCccC
Confidence 7899999999887 5678888886
No 130
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=26.32 E-value=2e+02 Score=27.61 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 6 DEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 6 ~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
|.|++.+..|..++..+|+..+...+.||+.+.-.|
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL 64 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQEL 64 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999988876444
No 131
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.04 E-value=77 Score=23.80 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=22.4
Q ss_pred eeccccceeEEEeeeee-CCccCCCccccc
Q 004014 229 TICNKCRTQYEYLRIYL-NNTLLCPNCHEA 257 (779)
Q Consensus 229 tic~GC~kk~ey~R~~l-n~~l~C~~C~~~ 257 (779)
=.|..|...|+...... .....|+.|+..
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (41)
T smart00834 6 YRCEDCGHTFEVLQKISDDPLATCPECGGD 35 (41)
T ss_pred EEcCCCCCEEEEEEecCCCCCCCCCCCCCc
Confidence 36899999998877654 556789999874
No 132
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=25.36 E-value=1.3e+02 Score=27.53 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004014 6 DEAARAKEIAERKLTEKNYAGAKKFALKAQNL 37 (779)
Q Consensus 6 ~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L 37 (779)
.+|...+..|+..+..++|..|.+++..|+..
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46888899999999999999999999998876
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=25.29 E-value=2.6e+02 Score=29.64 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHH
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGIS 45 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~ 45 (779)
+...-..|...+..|+++.|...+.++...+|.-+-+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~ 69 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ 69 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 44455677777888888888888888888887764443
No 134
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=25.14 E-value=24 Score=34.71 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=22.7
Q ss_pred eccccceeEEEeeeeeCCc-----cCCCccccceEEE
Q 004014 230 ICNKCRTQYEYLRIYLNNT-----LLCPNCHEAFLAV 261 (779)
Q Consensus 230 ic~GC~kk~ey~R~~ln~~-----l~C~~C~~~f~Av 261 (779)
.|+.|..+|.+.-. +... ..||.|+......
T Consensus 101 ~Cp~C~~~y~~~ea-~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 101 KCPNCQSKYTFLEA-NQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred ECcCCCCEeeHHHH-HHhcCCCCcEECCCCCCEEEEc
Confidence 59999999987432 2222 7899999998654
No 135
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=25.06 E-value=99 Score=29.40 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHhhhhhCCCCCCC-C----CchHHHHHHHHHHHHhcc
Q 004014 75 PWVDDETVRKQFRKLALSLHPDKNKA-I----GADGAFKLVSEAWSLLSD 119 (779)
Q Consensus 75 ~~A~~~eIKkaYRkLal~~HPDkn~~-~----~a~~~F~~I~eAy~vLsD 119 (779)
+..+..+++.+.|.+-++.|||.... + ..++.+++++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 34567889999999999999997653 2 245568888877777753
No 136
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=24.82 E-value=1.1e+02 Score=24.46 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=22.1
Q ss_pred eeeccccceeEEEeeeeeC-CccCCCccccc
Q 004014 228 WTICNKCRTQYEYLRIYLN-NTLLCPNCHEA 257 (779)
Q Consensus 228 wtic~GC~kk~ey~R~~ln-~~l~C~~C~~~ 257 (779)
+=.|..|...|+..+.+-. ....|+.|+..
T Consensus 5 ey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 5 EYRCTACGHRFEVLQKMSDDPLATCPECGGE 35 (52)
T ss_pred EEEeCCCCCEeEEEEecCCCCCCCCCCCCCC
Confidence 3369999999998876432 34579999984
No 137
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=24.59 E-value=52 Score=33.02 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=14.7
Q ss_pred ccCCCccccceEEEEcCC
Q 004014 248 TLLCPNCHEAFLAVEKPP 265 (779)
Q Consensus 248 ~l~C~~C~~~f~Avev~p 265 (779)
...|++|+..|.++|.-.
T Consensus 28 ~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 28 RRECLACGKRFTTFERVE 45 (154)
T ss_pred eeeccccCCcceEeEecc
Confidence 367999999999998643
No 138
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=23.86 E-value=1.4e+02 Score=30.53 Aligned_cols=42 Identities=17% Similarity=0.050 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004014 7 EAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQML 48 (779)
Q Consensus 7 EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll 48 (779)
.+.-|..++..++..++++.|...+.+|.++.|....+...+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l 113 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL 113 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455677889999999999999999999999999976554333
No 139
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.33 E-value=26 Score=30.87 Aligned_cols=37 Identities=32% Similarity=0.584 Sum_probs=26.7
Q ss_pred CCCccee-eeccccceeEEEeeeeeCCccCCCccccceEEEEcCCC
Q 004014 222 QNPGTFW-TICNKCRTQYEYLRIYLNNTLLCPNCHEAFLAVEKPPP 266 (779)
Q Consensus 222 ~~~~TFw-tic~GC~kk~ey~R~~ln~~l~C~~C~~~f~Avev~pp 266 (779)
.+-+||+ |+|..|-.. ...+.|++|.+.+++-.|.|-
T Consensus 22 A~ICtfEcTFCadCae~--------~l~g~CPnCGGelv~RP~RPa 59 (84)
T COG3813 22 ARICTFECTFCADCAEN--------RLHGLCPNCGGELVARPIRPA 59 (84)
T ss_pred eeEEEEeeehhHhHHHH--------hhcCcCCCCCchhhcCcCChH
Confidence 3457887 677777531 224789999999999887764
No 140
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=23.19 E-value=2.4e+02 Score=27.16 Aligned_cols=38 Identities=13% Similarity=-0.169 Sum_probs=31.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQML 48 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll 48 (779)
+...+..++..|+++.|..++.+|..+.|........+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 64 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIAL 64 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 45578899999999999999999999999975554333
No 141
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.09 E-value=85 Score=28.08 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhC
Q 004014 15 AERKLTEKNYAGAKKFALKAQNLY 38 (779)
Q Consensus 15 Aek~l~~~D~~gA~r~a~KAq~L~ 38 (779)
++.+...||+++|++...+|+.+.
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHHH
Confidence 678899999999999999998764
No 142
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=22.53 E-value=3.4e+02 Score=27.03 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 9 ARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 9 ~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
..+-..|+.+|..++|..|.+.++....-+|.-
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g 43 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFG 43 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 345556677777777777777777776666664
No 143
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=22.50 E-value=1.3e+02 Score=30.69 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=27.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCChH
Q 004014 12 KEIAERKLTEKNYAGAKKFALKAQNLYPGLE 42 (779)
Q Consensus 12 ~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~ 42 (779)
..+|.-++..|++..|...+.++...+|..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 3678888999999999999999999999754
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=22.11 E-value=1.2e+02 Score=26.69 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
+.-...+|...+..++++.|...+.++...+|.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 35 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS 35 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 3445678999999999999999999999999874
No 145
>smart00439 BAH Bromo adjacent homology domain.
Probab=22.05 E-value=2e+02 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=25.9
Q ss_pred CCCCeEEEecCCCCCccceeEEEEeeecCC---ceEEEEeccc
Q 004014 528 GDDQVWAAYDDDDGMPRYYARIHKVISLKP---FKMKISWLNS 567 (779)
Q Consensus 528 ~~gQIWA~Yd~~DgmPR~Ya~I~kV~~~~p---Fkl~iswLe~ 567 (779)
++|+.=-+=.++..-|.+.|+|.+|..... ..+++.|+-.
T Consensus 3 ~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~r 45 (120)
T smart00439 3 RVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYR 45 (120)
T ss_pred ccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEC
Confidence 444432233333357999999999975433 5899999843
No 146
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.57 E-value=5.1e+02 Score=32.18 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHH--------HHHHHHhhhcCCCCchhhcCCC-----
Q 004014 8 AARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTID--------VYIAAEKKVNGEVDWYAILGTN----- 74 (779)
Q Consensus 8 A~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~--------v~~aa~~~~~~~~D~Y~ILgV~----- 74 (779)
+.-.+-+|+..++.+.+++|.+.++++..++|....+...+..+- ....+++-.....|-+..+..-
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 334456699999999999999999999999999866543332211 1112222333445544444322
Q ss_pred CCCCHHHHHHHHHHhhhhhCCCCCCC-----------CCchHHHHHHHHHHHHhcchhhH
Q 004014 75 PWVDDETVRKQFRKLALSLHPDKNKA-----------IGADGAFKLVSEAWSLLSDKAKR 123 (779)
Q Consensus 75 ~~A~~~eIKkaYRkLal~~HPDkn~~-----------~~a~~~F~~I~eAy~vLsD~~kR 123 (779)
..-..++--..|+++.. .|||-... ...+++...+.+|.+..++-.|.
T Consensus 166 ~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 166 EIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 22345566678999888 89984321 12456667777777777776644
No 147
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=2.5e+02 Score=25.05 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=39.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHhhhhhCCCCCCCCCchHHHHHHHHHHHHhcchhhHHHhhhc
Q 004014 65 VDWYAILGTNPWVDDETVRKQFRKLALSLHPDKNKAIGADGAFKLVSEAWSLLSDKAKRLAYNEK 129 (779)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDkn~~~~a~~~F~~I~eAy~vLsD~~kR~~YD~~ 129 (779)
++--.+++++|-|++.||+.+-++..+++.--..++....++|..--++... ..|.+.|..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~iaA----~areLLDaL 63 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIAA----TARELLDAL 63 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH----HHHHHHHhc
Confidence 3455788999999999999988777777644444444556666654443322 235555543
No 148
>PRK12370 invasion protein regulator; Provisional
Probab=21.07 E-value=4.6e+02 Score=31.13 Aligned_cols=36 Identities=14% Similarity=-0.040 Sum_probs=28.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 004014 15 AERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMT 50 (779)
Q Consensus 15 Aek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~ 50 (779)
|..++..++++.|...+.+|.++.|+...+...+..
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 555677899999999999999999998665544443
No 149
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=21.04 E-value=1.9e+02 Score=30.72 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=58.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCC-chhhcCCCC-CCCHHHHHHHHHH
Q 004014 11 AKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVD-WYAILGTNP-WVDDETVRKQFRK 88 (779)
Q Consensus 11 a~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D-~Y~ILgV~~-~A~~~eIKkaYRk 88 (779)
...+|..++..+|+..|...+.+..+++|+-+.+...+-....- .. ....+ +=..++++. .-|....++|+..
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~--~~---~~~~~~~~~~~~~~~~~rD~~~~~~A~~~ 146 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT--NM---ALDDSALQGFFGVDRSDRDPQHARAAFRD 146 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh--hh---hcchhhhhhccCCCccccCHHHHHHHHHH
Confidence 35789999999999999999999999999998876443332211 00 01111 112344443 3356667766554
Q ss_pred h--hhhhCCCCCCCCCchHHHHHHHHHHHHhc
Q 004014 89 L--ALSLHPDKNKAIGADGAFKLVSEAWSLLS 118 (779)
Q Consensus 89 L--al~~HPDkn~~~~a~~~F~~I~eAy~vLs 118 (779)
+ .+..+|+..- +.++=+.|.+..+.|.
T Consensus 147 ~~~li~~yP~S~y---a~~A~~rl~~l~~~la 175 (243)
T PRK10866 147 FSKLVRGYPNSQY---TTDATKRLVFLKDRLA 175 (243)
T ss_pred HHHHHHHCcCChh---HHHHHHHHHHHHHHHH
Confidence 3 3344787643 3333344444444444
No 150
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.95 E-value=1.5e+02 Score=23.65 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 004014 12 KEIAERKLTEKNYAGAKKFALKAQN 36 (779)
Q Consensus 12 ~~iAek~l~~~D~~gA~r~a~KAq~ 36 (779)
+++|..++..||.++|+..+.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4789999999999999999998774
No 151
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=20.75 E-value=2.9e+02 Score=27.19 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCh
Q 004014 6 DEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGL 41 (779)
Q Consensus 6 ~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l 41 (779)
|.|++.+.+|..+|..+|+..+...+.||+.++-.|
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999998887655
No 152
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=20.42 E-value=54 Score=24.31 Aligned_cols=25 Identities=32% Similarity=0.771 Sum_probs=20.7
Q ss_pred eccccceeEEEeeeeeCCccCCCcccc
Q 004014 230 ICNKCRTQYEYLRIYLNNTLLCPNCHE 256 (779)
Q Consensus 230 ic~GC~kk~ey~R~~ln~~l~C~~C~~ 256 (779)
.|.+|...+.|.+. ....+|..|+-
T Consensus 3 ~C~~C~t~L~yP~g--A~~vrCs~C~~ 27 (31)
T TIGR01053 3 VCGGCRTLLMYPRG--ASSVRCALCQT 27 (31)
T ss_pred CcCCCCcEeecCCC--CCeEECCCCCe
Confidence 48999999999887 56788998864
No 153
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.39 E-value=81 Score=38.23 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhcCCCCchhhcCCCCCCCH-HH
Q 004014 3 CNKDEAARAKEIAERKLTEKNYAGAKKFALKAQNLYPGLEGISQMLMTIDVYIAAEKKVNGEVDWYAILGTNPWVDD-ET 81 (779)
Q Consensus 3 cNk~EA~ra~~iAek~l~~~D~~gA~r~a~KAq~L~p~l~~i~qll~~~~v~~aa~~~~~~~~D~Y~ILgV~~~A~~-~e 81 (779)
-+|+-.+-|+.++.-.=..+|.+.|++++.+|..|+|...=. |.+||-+-.+.+ -+
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa-----------------------yTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA-----------------------YTLLGHESIATEEFD 472 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh-----------------------hhhcCChhhhhHHHH
Confidence 345566777877887888999999999999999999987311 667776665543 36
Q ss_pred HHHHHHHhhhhhCCCCC
Q 004014 82 VRKQFRKLALSLHPDKN 98 (779)
Q Consensus 82 IKkaYRkLal~~HPDkn 98 (779)
+.+.|.+.|+..-|++.
T Consensus 473 ~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHY 489 (638)
T ss_pred hHHHHHHhhhcCCchhh
Confidence 77777788888888764
Done!