Query 004015
Match_columns 779
No_of_seqs 414 out of 2062
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:03:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12490 BCAS3: Breast carcino 100.0 1.7E-59 3.6E-64 492.2 16.4 241 404-645 1-251 (251)
2 KOG2109 WD40 repeat protein [G 100.0 6E-45 1.3E-49 406.1 18.4 553 1-659 90-653 (788)
3 KOG2110 Uncharacterized conser 100.0 3.7E-28 8.1E-33 258.2 27.9 179 63-359 67-250 (391)
4 KOG2111 Uncharacterized conser 99.9 1.7E-24 3.7E-29 227.0 24.8 186 59-359 70-258 (346)
5 KOG0315 G-protein beta subunit 99.8 1.1E-19 2.4E-24 185.8 21.4 261 63-370 19-301 (311)
6 KOG0271 Notchless-like WD40 re 99.8 9.6E-20 2.1E-24 194.7 16.7 254 63-373 178-455 (480)
7 KOG0263 Transcription initiati 99.8 2.3E-18 4.9E-23 197.5 22.7 200 82-362 450-654 (707)
8 KOG0271 Notchless-like WD40 re 99.8 5.2E-19 1.1E-23 189.1 15.0 233 63-373 136-413 (480)
9 KOG0272 U4/U6 small nuclear ri 99.8 1.6E-18 3.5E-23 187.3 18.6 229 64-373 197-434 (459)
10 KOG0286 G-protein beta subunit 99.8 8.9E-18 1.9E-22 175.1 22.8 235 62-373 75-319 (343)
11 KOG0291 WD40-repeat-containing 99.8 1.2E-17 2.6E-22 190.2 21.5 196 53-367 358-560 (893)
12 KOG0318 WD40 repeat stress pro 99.8 1E-16 2.2E-21 177.1 23.9 288 62-402 255-589 (603)
13 KOG0266 WD40 repeat-containing 99.7 6.1E-17 1.3E-21 184.5 21.6 192 62-371 179-378 (456)
14 KOG0272 U4/U6 small nuclear ri 99.7 6.2E-18 1.4E-22 182.9 12.1 183 52-355 268-458 (459)
15 KOG0273 Beta-transducin family 99.7 6.9E-17 1.5E-21 176.6 18.8 197 63-366 256-491 (524)
16 KOG0279 G protein beta subunit 99.7 6.6E-16 1.4E-20 160.4 20.6 223 63-366 37-271 (315)
17 KOG0286 G-protein beta subunit 99.7 9.7E-16 2.1E-20 160.0 21.6 208 78-361 49-263 (343)
18 KOG0295 WD40 repeat-containing 99.7 2.7E-16 5.9E-21 167.8 16.4 225 64-369 130-376 (406)
19 KOG0319 WD40-repeat-containing 99.7 3.3E-16 7.2E-21 178.5 17.2 271 64-373 260-551 (775)
20 cd00200 WD40 WD40 domain, foun 99.7 1.6E-14 3.5E-19 144.7 25.0 171 64-355 115-289 (289)
21 KOG0266 WD40 repeat-containing 99.7 7.9E-15 1.7E-19 167.2 23.6 188 62-369 223-421 (456)
22 cd00200 WD40 WD40 domain, foun 99.6 4.9E-14 1.1E-18 141.2 25.1 186 63-369 72-261 (289)
23 KOG0276 Vesicle coat complex C 99.6 2.8E-15 6.1E-20 168.2 17.2 223 64-365 35-265 (794)
24 KOG0265 U5 snRNP-specific prot 99.6 9.7E-15 2.1E-19 153.0 19.7 246 52-373 54-312 (338)
25 KOG0273 Beta-transducin family 99.6 3.2E-14 6.9E-19 156.0 23.5 223 62-357 296-523 (524)
26 KOG0295 WD40 repeat-containing 99.6 8.6E-15 1.9E-19 156.5 18.0 189 62-356 213-405 (406)
27 KOG0282 mRNA splicing factor [ 99.6 3.2E-15 6.9E-20 164.2 15.1 207 62-373 235-478 (503)
28 KOG1446 Histone H3 (Lys4) meth 99.6 4.5E-14 9.7E-19 149.0 22.3 184 64-367 80-272 (311)
29 PLN00181 protein SPA1-RELATED; 99.6 7.8E-14 1.7E-18 169.0 25.8 214 63-356 554-792 (793)
30 KOG2055 WD40 repeat protein [G 99.6 7.3E-15 1.6E-19 160.7 14.3 179 64-359 325-514 (514)
31 PTZ00420 coronin; Provisional 99.6 2.9E-13 6.4E-18 157.4 26.6 107 243-365 143-256 (568)
32 KOG0319 WD40-repeat-containing 99.6 9.8E-14 2.1E-18 158.6 21.3 266 63-371 302-591 (775)
33 PLN00181 protein SPA1-RELATED; 99.6 7.2E-13 1.6E-17 160.7 28.1 219 63-359 504-740 (793)
34 KOG0274 Cdc4 and related F-box 99.6 1.5E-13 3.1E-18 159.2 21.0 182 63-370 227-414 (537)
35 KOG0285 Pleiotropic regulator 99.6 6.4E-14 1.4E-18 149.5 16.4 191 62-374 171-365 (460)
36 KOG0291 WD40-repeat-containing 99.6 3.1E-13 6.6E-18 154.7 22.6 118 241-374 365-483 (893)
37 KOG0279 G protein beta subunit 99.6 3.3E-13 7.1E-18 140.6 20.6 116 242-373 79-196 (315)
38 KOG0281 Beta-TrCP (transducin 99.5 6.6E-15 1.4E-19 156.2 7.7 214 63-360 216-431 (499)
39 PTZ00421 coronin; Provisional 99.5 9.3E-13 2E-17 151.6 25.6 106 242-363 142-251 (493)
40 KOG0292 Vesicle coat complex C 99.5 1.1E-13 2.4E-18 160.1 17.6 224 64-366 31-289 (1202)
41 KOG0278 Serine/threonine kinas 99.5 8.4E-14 1.8E-18 143.0 14.6 134 62-301 163-299 (334)
42 PTZ00421 coronin; Provisional 99.5 1.8E-12 4E-17 149.1 27.3 179 63-360 97-293 (493)
43 KOG0316 Conserved WD40 repeat- 99.5 1.1E-13 2.4E-18 141.3 14.3 223 63-368 38-268 (307)
44 KOG1407 WD40 repeat protein [F 99.5 4.4E-13 9.5E-18 138.6 18.7 221 63-366 41-270 (313)
45 KOG0274 Cdc4 and related F-box 99.5 1.8E-13 3.9E-18 158.4 17.8 181 62-367 269-451 (537)
46 KOG0643 Translation initiation 99.5 4.9E-13 1.1E-17 138.6 17.7 115 241-358 162-318 (327)
47 KOG0318 WD40 repeat stress pro 99.5 7.8E-13 1.7E-17 146.7 20.0 109 242-365 164-273 (603)
48 KOG0288 WD40 repeat protein Ti 99.5 1.5E-13 3.3E-18 148.9 14.1 222 63-366 196-426 (459)
49 KOG0315 G-protein beta subunit 99.5 1.6E-12 3.4E-17 133.8 20.4 236 95-369 12-258 (311)
50 KOG0305 Anaphase promoting com 99.5 3.3E-12 7.2E-17 144.6 23.4 231 64-359 197-463 (484)
51 KOG0277 Peroxisomal targeting 99.5 2.5E-13 5.4E-18 139.9 12.9 192 63-373 82-281 (311)
52 KOG0264 Nucleosome remodeling 99.5 9.7E-13 2.1E-17 144.1 18.1 133 240-388 242-381 (422)
53 KOG0310 Conserved WD40 repeat- 99.5 2.5E-13 5.4E-18 149.7 13.3 189 64-373 48-242 (487)
54 KOG0275 Conserved WD40 repeat- 99.5 8E-14 1.7E-18 146.9 8.4 109 242-367 279-388 (508)
55 KOG0310 Conserved WD40 repeat- 99.5 8E-13 1.7E-17 145.8 16.5 181 64-365 90-276 (487)
56 PTZ00420 coronin; Provisional 99.5 3.8E-12 8.2E-17 148.2 22.8 112 242-371 91-211 (568)
57 KOG0263 Transcription initiati 99.5 1.8E-13 3.8E-18 157.7 11.3 117 240-373 507-623 (707)
58 KOG2109 WD40 repeat protein [G 99.5 1.5E-13 3.3E-18 155.6 10.4 270 68-370 302-589 (788)
59 KOG0645 WD40 repeat protein [G 99.5 1E-11 2.3E-16 129.1 22.7 176 64-357 37-225 (312)
60 KOG0285 Pleiotropic regulator 99.4 1.1E-12 2.3E-17 140.3 15.1 108 244-368 211-318 (460)
61 KOG0316 Conserved WD40 repeat- 99.4 3.6E-12 7.8E-17 130.3 17.9 129 241-370 74-226 (307)
62 KOG0306 WD40-repeat-containing 99.4 2.3E-12 5E-17 147.6 17.8 118 244-368 430-549 (888)
63 KOG1539 WD repeat protein [Gen 99.4 2.5E-12 5.5E-17 148.7 17.8 174 62-358 468-649 (910)
64 KOG0277 Peroxisomal targeting 99.4 6.3E-12 1.4E-16 129.7 18.4 110 242-368 121-233 (311)
65 KOG0772 Uncharacterized conser 99.4 1.4E-12 3E-17 144.4 14.6 114 240-366 283-403 (641)
66 KOG0268 Sof1-like rRNA process 99.4 6.9E-13 1.5E-17 142.0 11.4 104 241-360 244-348 (433)
67 KOG0269 WD40 repeat-containing 99.4 1.3E-12 2.8E-17 150.2 13.6 118 241-374 192-314 (839)
68 KOG0284 Polyadenylation factor 99.4 6.9E-13 1.5E-17 143.6 9.5 187 63-371 159-352 (464)
69 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.7E-10 3.6E-15 120.2 27.1 222 63-367 52-289 (300)
70 KOG0289 mRNA splicing factor [ 99.4 8.6E-12 1.9E-16 136.1 17.6 217 64-358 241-463 (506)
71 KOG0275 Conserved WD40 repeat- 99.4 1.2E-12 2.7E-17 138.0 10.8 204 63-371 234-481 (508)
72 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.4E-10 2.9E-15 120.9 25.8 176 64-361 11-191 (300)
73 KOG0281 Beta-TrCP (transducin 99.4 8.7E-13 1.9E-17 140.4 9.4 218 62-359 255-479 (499)
74 KOG0308 Conserved WD40 repeat- 99.4 1.4E-12 2.9E-17 147.7 11.4 189 63-371 46-257 (735)
75 KOG0288 WD40 repeat protein Ti 99.4 5E-12 1.1E-16 137.2 14.3 174 62-355 281-459 (459)
76 KOG0973 Histone transcription 99.4 4E-12 8.6E-17 150.8 14.4 122 246-371 35-173 (942)
77 KOG0306 WD40-repeat-containing 99.4 8.2E-12 1.8E-16 143.2 16.3 176 62-358 474-665 (888)
78 KOG0276 Vesicle coat complex C 99.3 1.8E-11 3.9E-16 138.1 16.7 209 64-353 77-295 (794)
79 KOG0264 Nucleosome remodeling 99.3 1.5E-11 3.3E-16 134.8 15.8 114 241-358 288-405 (422)
80 KOG0284 Polyadenylation factor 99.3 3.5E-12 7.5E-17 138.3 10.5 117 240-373 194-310 (464)
81 KOG0643 Translation initiation 99.3 7.8E-11 1.7E-15 122.4 19.3 188 64-367 32-230 (327)
82 KOG0278 Serine/threonine kinas 99.3 1.7E-11 3.7E-16 126.3 14.3 214 62-360 79-300 (334)
83 KOG0313 Microtubule binding pr 99.3 4.5E-11 9.8E-16 128.9 17.7 101 242-359 316-420 (423)
84 KOG1407 WD40 repeat protein [F 99.3 7.9E-11 1.7E-15 122.1 18.2 161 64-348 128-293 (313)
85 KOG0267 Microtubule severing p 99.3 1.9E-12 4.2E-17 147.8 6.7 182 64-366 50-235 (825)
86 KOG0296 Angio-associated migra 99.3 7.9E-11 1.7E-15 126.6 18.5 98 241-357 301-398 (399)
87 KOG0283 WD40 repeat-containing 99.3 2.7E-11 5.8E-16 140.8 16.1 111 238-367 380-491 (712)
88 KOG0302 Ribosome Assembly prot 99.3 7.2E-11 1.6E-15 127.2 17.9 105 240-359 272-380 (440)
89 KOG0640 mRNA cleavage stimulat 99.3 1.8E-11 4E-16 129.0 13.0 104 248-366 238-344 (430)
90 KOG0265 U5 snRNP-specific prot 99.3 6E-11 1.3E-15 124.9 16.7 171 63-354 154-335 (338)
91 KOG1539 WD repeat protein [Gen 99.3 4.2E-10 9.2E-15 130.7 25.1 121 243-365 465-614 (910)
92 KOG1446 Histone H3 (Lys4) meth 99.3 2.9E-10 6.3E-15 120.5 21.5 187 64-368 36-228 (311)
93 KOG0645 WD40 repeat protein [G 99.3 3.4E-10 7.4E-15 117.9 21.5 113 244-370 79-196 (312)
94 KOG4378 Nuclear protein COP1 [ 99.3 2.5E-11 5.4E-16 134.0 13.5 189 63-371 100-295 (673)
95 KOG1036 Mitotic spindle checkp 99.3 4.8E-11 1E-15 126.0 15.0 166 63-347 115-294 (323)
96 KOG0308 Conserved WD40 repeat- 99.3 6.3E-11 1.4E-15 134.4 16.1 107 242-365 187-293 (735)
97 KOG2919 Guanine nucleotide-bin 99.3 8.7E-11 1.9E-15 124.7 15.4 114 246-373 228-344 (406)
98 KOG0299 U3 snoRNP-associated p 99.3 1.3E-10 2.7E-15 127.9 17.2 203 64-345 224-443 (479)
99 KOG1274 WD40 repeat protein [G 99.3 4E-10 8.6E-15 132.1 22.0 190 64-358 35-263 (933)
100 KOG4283 Transcription-coupled 99.2 2.2E-10 4.7E-15 120.4 17.2 111 246-359 166-278 (397)
101 KOG0641 WD40 repeat protein [G 99.2 1.2E-09 2.6E-14 111.4 21.5 185 63-357 162-349 (350)
102 KOG2096 WD40 repeat protein [G 99.2 1.7E-10 3.8E-15 122.2 16.1 109 240-358 201-309 (420)
103 KOG0646 WD40 repeat protein [G 99.2 1.2E-09 2.7E-14 120.4 22.0 245 64-365 61-315 (476)
104 KOG0268 Sof1-like rRNA process 99.2 9.5E-11 2E-15 125.8 12.7 215 63-359 88-304 (433)
105 KOG0300 WD40 repeat-containing 99.2 1.5E-10 3.2E-15 122.4 13.3 110 241-367 287-397 (481)
106 KOG1408 WD40 repeat protein [F 99.2 2.7E-10 5.9E-15 130.0 16.0 220 64-358 481-714 (1080)
107 KOG0772 Uncharacterized conser 99.2 1.5E-10 3.4E-15 128.5 13.7 112 241-367 332-455 (641)
108 KOG0269 WD40 repeat-containing 99.2 2.9E-11 6.3E-16 139.2 8.3 106 241-362 149-255 (839)
109 KOG0270 WD40 repeat-containing 99.2 1.6E-10 3.5E-15 126.7 13.1 105 241-360 345-452 (463)
110 KOG0313 Microtubule binding pr 99.2 2E-09 4.2E-14 116.4 21.1 118 240-372 273-392 (423)
111 KOG0639 Transducin-like enhanc 99.2 1.2E-10 2.6E-15 128.8 11.9 106 245-369 528-633 (705)
112 KOG0294 WD40 repeat-containing 99.2 6.4E-10 1.4E-14 117.9 16.7 61 240-301 99-159 (362)
113 KOG0267 Microtubule severing p 99.2 4.9E-11 1.1E-15 136.5 8.5 114 241-371 85-198 (825)
114 KOG1272 WD40-repeat-containing 99.2 5.9E-11 1.3E-15 130.5 8.5 207 64-356 151-361 (545)
115 KOG0296 Angio-associated migra 99.1 7.2E-09 1.6E-13 111.7 23.0 183 64-366 86-272 (399)
116 KOG0641 WD40 repeat protein [G 99.1 7.6E-09 1.6E-13 105.6 21.8 100 241-357 197-303 (350)
117 KOG0973 Histone transcription 99.1 3.8E-09 8.2E-14 126.0 22.1 204 256-488 117-358 (942)
118 KOG1188 WD40 repeat protein [G 99.1 1E-09 2.2E-14 117.4 14.4 193 62-365 48-250 (376)
119 KOG2048 WD40 repeat protein [G 99.1 1.2E-08 2.5E-13 116.9 23.8 103 244-361 86-188 (691)
120 KOG0283 WD40 repeat-containing 99.1 2.4E-09 5.2E-14 124.9 17.5 176 62-360 388-579 (712)
121 KOG0647 mRNA export protein (c 99.1 5.3E-09 1.1E-13 110.6 18.1 204 63-346 93-312 (347)
122 KOG0305 Anaphase promoting com 99.1 1.3E-09 2.8E-14 123.8 14.2 113 242-372 233-346 (484)
123 KOG0301 Phospholipase A2-activ 99.1 5.3E-09 1.1E-13 119.8 18.8 234 64-359 35-290 (745)
124 KOG0282 mRNA splicing factor [ 99.0 3.4E-10 7.3E-15 125.2 8.1 103 240-360 229-333 (503)
125 KOG0292 Vesicle coat complex C 99.0 5.1E-10 1.1E-14 130.4 8.4 136 242-394 25-169 (1202)
126 KOG0646 WD40 repeat protein [G 99.0 2.7E-09 5.9E-14 117.8 13.4 111 246-364 101-213 (476)
127 KOG1036 Mitotic spindle checkp 99.0 1.9E-08 4.1E-13 106.7 18.8 188 63-366 74-271 (323)
128 KOG0322 G-protein beta subunit 99.0 5.1E-09 1.1E-13 109.0 14.0 70 270-356 253-322 (323)
129 KOG2048 WD40 repeat protein [G 99.0 2.7E-08 6E-13 113.9 20.8 188 64-370 47-246 (691)
130 KOG1332 Vesicle coat complex C 99.0 2.8E-08 6.1E-13 102.7 18.4 108 240-361 177-290 (299)
131 KOG1408 WD40 repeat protein [F 99.0 4.7E-08 1E-12 112.2 21.7 90 270-373 598-687 (1080)
132 KOG1034 Transcriptional repres 98.9 2.6E-09 5.6E-14 113.9 9.7 102 242-359 109-213 (385)
133 KOG0321 WD40 repeat-containing 98.9 3.9E-09 8.5E-14 119.9 11.1 114 246-373 238-364 (720)
134 KOG2055 WD40 repeat protein [G 98.9 4.2E-08 9.2E-13 108.4 18.5 97 245-358 322-418 (514)
135 KOG1009 Chromatin assembly com 98.9 4.9E-09 1.1E-13 114.2 10.8 129 241-371 29-167 (434)
136 KOG1274 WD40 repeat protein [G 98.9 4E-08 8.6E-13 115.7 18.8 174 64-354 118-297 (933)
137 KOG0293 WD40 repeat-containing 98.9 2.3E-08 4.9E-13 109.2 15.6 120 248-368 291-436 (519)
138 KOG2445 Nuclear pore complex c 98.9 1.3E-07 2.8E-12 100.4 20.8 110 245-358 196-319 (361)
139 KOG2106 Uncharacterized conser 98.9 2.9E-07 6.3E-12 102.8 24.1 259 53-365 208-485 (626)
140 KOG1273 WD40 repeat protein [G 98.9 5.3E-09 1.1E-13 111.0 9.7 128 240-368 37-194 (405)
141 KOG0302 Ribosome Assembly prot 98.9 5.2E-09 1.1E-13 113.1 9.5 119 240-373 226-351 (440)
142 KOG4283 Transcription-coupled 98.9 7E-08 1.5E-12 101.9 17.1 135 63-301 123-278 (397)
143 KOG0289 mRNA splicing factor [ 98.9 1.9E-08 4E-13 110.5 12.6 114 244-372 279-392 (506)
144 COG2319 FOG: WD40 repeat [Gene 98.8 1E-06 2.2E-11 91.8 24.9 184 63-366 133-323 (466)
145 KOG0647 mRNA export protein (c 98.8 3.4E-07 7.5E-12 97.1 21.0 233 64-373 50-297 (347)
146 KOG2096 WD40 repeat protein [G 98.8 1.3E-07 2.8E-12 100.7 17.9 112 248-373 250-377 (420)
147 KOG1332 Vesicle coat complex C 98.8 2.1E-08 4.5E-13 103.6 11.3 129 240-392 25-163 (299)
148 KOG4328 WD40 protein [Function 98.8 2.3E-07 4.9E-12 102.7 19.9 102 243-357 296-399 (498)
149 KOG0294 WD40 repeat-containing 98.8 2E-08 4.4E-13 106.7 11.1 108 241-365 56-165 (362)
150 KOG2106 Uncharacterized conser 98.8 4.2E-07 9.1E-12 101.5 21.2 99 240-354 420-518 (626)
151 COG2319 FOG: WD40 repeat [Gene 98.8 1.4E-06 3.1E-11 90.7 24.0 99 246-361 176-275 (466)
152 KOG0299 U3 snoRNP-associated p 98.8 2E-07 4.2E-12 103.2 17.8 101 244-359 304-412 (479)
153 KOG1063 RNA polymerase II elon 98.8 1.4E-08 3E-13 116.4 8.9 99 248-359 552-650 (764)
154 PF08662 eIF2A: Eukaryotic tra 98.8 7.3E-08 1.6E-12 98.3 13.2 92 244-357 79-179 (194)
155 KOG0650 WD40 repeat nucleolar 98.8 3.7E-08 8.1E-13 111.5 12.0 253 63-359 421-682 (733)
156 PRK01742 tolB translocation pr 98.8 3.7E-07 8.1E-12 103.6 20.4 78 272-369 336-415 (429)
157 PRK11028 6-phosphogluconolacto 98.8 3.2E-06 6.9E-11 91.9 25.9 115 243-368 143-269 (330)
158 KOG0640 mRNA cleavage stimulat 98.8 1.5E-08 3.2E-13 107.4 7.4 111 240-365 126-254 (430)
159 KOG1273 WD40 repeat protein [G 98.7 1.8E-07 3.8E-12 99.7 15.3 227 64-359 45-282 (405)
160 KOG1963 WD40 repeat protein [G 98.7 6E-07 1.3E-11 105.7 21.0 256 62-390 35-304 (792)
161 KOG0300 WD40 repeat-containing 98.7 4.9E-08 1.1E-12 103.6 10.9 130 243-375 165-320 (481)
162 KOG0307 Vesicle coat complex C 98.7 3.3E-08 7.1E-13 118.7 10.4 97 247-360 231-330 (1049)
163 KOG2110 Uncharacterized conser 98.7 9.9E-07 2.1E-11 95.7 20.6 200 64-368 106-343 (391)
164 PRK11028 6-phosphogluconolacto 98.7 1.2E-06 2.6E-11 95.2 21.6 104 247-363 196-310 (330)
165 KOG0307 Vesicle coat complex C 98.7 2.9E-08 6.3E-13 119.1 9.5 105 242-361 178-288 (1049)
166 KOG0303 Actin-binding protein 98.7 1E-07 2.2E-12 103.8 12.8 113 241-371 97-217 (472)
167 KOG0293 WD40 repeat-containing 98.7 2.9E-08 6.2E-13 108.4 8.6 103 240-358 238-343 (519)
168 KOG0303 Actin-binding protein 98.7 1.7E-07 3.7E-12 102.1 14.2 107 242-365 148-257 (472)
169 KOG4378 Nuclear protein COP1 [ 98.7 6.9E-07 1.5E-11 99.6 19.1 107 241-363 94-201 (673)
170 KOG0639 Transducin-like enhanc 98.7 1E-07 2.3E-12 106.0 12.1 211 64-356 487-703 (705)
171 KOG1445 Tumor-specific antigen 98.7 3E-08 6.4E-13 112.5 7.2 101 242-359 644-752 (1012)
172 KOG1445 Tumor-specific antigen 98.6 2.5E-07 5.5E-12 105.1 13.7 93 242-349 694-786 (1012)
173 KOG0270 WD40 repeat-containing 98.6 2.4E-07 5.1E-12 102.2 13.0 117 240-373 258-377 (463)
174 PRK03629 tolB translocation pr 98.6 4.5E-06 9.6E-11 95.0 23.2 101 249-369 312-417 (429)
175 KOG0642 Cell-cycle nuclear pro 98.6 1E-07 2.3E-12 107.5 9.5 112 239-359 307-428 (577)
176 KOG0290 Conserved WD40 repeat- 98.6 8E-07 1.7E-11 94.0 15.2 90 247-348 265-357 (364)
177 KOG0650 WD40 repeat nucleolar 98.6 1.9E-07 4E-12 106.0 11.2 180 64-354 546-732 (733)
178 KOG1034 Transcriptional repres 98.6 9.6E-07 2.1E-11 94.6 15.5 84 260-356 297-382 (385)
179 KOG1587 Cytoplasmic dynein int 98.6 1.4E-06 3.1E-11 101.4 18.4 99 245-358 417-517 (555)
180 KOG0771 Prolactin regulatory e 98.6 2.7E-07 5.9E-12 101.3 11.5 128 240-369 158-324 (398)
181 KOG0321 WD40 repeat-containing 98.6 1.9E-06 4.2E-11 98.6 17.5 94 264-363 210-307 (720)
182 KOG2394 WD40 protein DMR-N9 [G 98.5 1.2E-07 2.7E-12 106.3 7.0 93 259-368 281-373 (636)
183 PRK01742 tolB translocation pr 98.5 3.9E-06 8.4E-11 95.3 19.2 89 250-359 274-363 (429)
184 KOG3881 Uncharacterized conser 98.5 3.4E-06 7.4E-11 92.2 17.1 107 240-362 218-325 (412)
185 PF08662 eIF2A: Eukaryotic tra 98.5 3.6E-06 7.9E-11 85.8 16.5 51 247-299 124-179 (194)
186 KOG1517 Guanine nucleotide bin 98.5 6.5E-06 1.4E-10 98.5 20.6 104 241-357 1224-1333(1387)
187 KOG0771 Prolactin regulatory e 98.5 1.3E-06 2.8E-11 96.1 12.8 75 268-358 281-355 (398)
188 KOG4328 WD40 protein [Function 98.5 2.7E-06 5.8E-11 94.4 15.3 110 240-357 337-450 (498)
189 KOG2394 WD40 protein DMR-N9 [G 98.5 1.2E-06 2.5E-11 98.7 12.3 61 240-301 304-364 (636)
190 PRK04922 tolB translocation pr 98.4 2.6E-05 5.7E-10 88.6 23.2 93 248-359 272-370 (433)
191 KOG0301 Phospholipase A2-activ 98.4 1.2E-06 2.7E-11 100.9 12.1 105 244-371 77-181 (745)
192 PRK04922 tolB translocation pr 98.4 5E-05 1.1E-09 86.4 24.0 89 249-356 317-410 (433)
193 KOG0649 WD40 repeat protein [G 98.4 1.1E-05 2.4E-10 83.7 16.4 112 243-365 131-243 (325)
194 PF00400 WD40: WD domain, G-be 98.4 7.8E-07 1.7E-11 66.3 5.8 38 259-297 2-39 (39)
195 KOG1007 WD repeat protein TSSC 98.4 5.3E-06 1.1E-10 87.8 14.0 116 242-358 231-362 (370)
196 PRK05137 tolB translocation pr 98.4 3.6E-05 7.9E-10 87.5 21.9 81 249-348 315-397 (435)
197 KOG2139 WD40 repeat protein [G 98.4 2.2E-05 4.9E-10 85.3 18.6 102 246-365 216-317 (445)
198 PRK03629 tolB translocation pr 98.4 6.5E-05 1.4E-09 85.5 23.6 95 249-359 268-365 (429)
199 PRK02889 tolB translocation pr 98.4 5.2E-05 1.1E-09 86.2 22.7 95 249-359 265-362 (427)
200 PRK05137 tolB translocation pr 98.3 0.00012 2.5E-09 83.4 25.3 92 248-357 270-366 (435)
201 KOG1188 WD40 repeat protein [G 98.3 5.2E-06 1.1E-10 89.5 12.2 106 243-362 89-201 (376)
202 KOG2445 Nuclear pore complex c 98.3 7E-06 1.5E-10 87.6 12.6 118 240-365 27-152 (361)
203 PF02239 Cytochrom_D1: Cytochr 98.3 0.00025 5.3E-09 79.6 25.4 183 64-365 16-210 (369)
204 KOG1538 Uncharacterized conser 98.3 2.2E-06 4.8E-11 98.1 9.1 145 85-355 14-160 (1081)
205 KOG1517 Guanine nucleotide bin 98.3 1.1E-05 2.3E-10 96.8 14.5 106 240-360 1271-1384(1387)
206 PRK02889 tolB translocation pr 98.2 0.00016 3.5E-09 82.3 23.3 72 271-360 330-404 (427)
207 PF10282 Lactonase: Lactonase, 98.2 0.00036 7.8E-09 77.1 25.4 85 270-367 246-332 (345)
208 KOG0322 G-protein beta subunit 98.2 7.8E-06 1.7E-10 85.7 10.8 57 241-298 266-322 (323)
209 KOG0644 Uncharacterized conser 98.2 4.4E-06 9.6E-11 97.9 10.0 245 63-359 211-470 (1113)
210 KOG1963 WD40 repeat protein [G 98.2 0.00013 2.9E-09 86.5 21.6 108 241-366 220-331 (792)
211 KOG0290 Conserved WD40 repeat- 98.2 9.3E-05 2E-09 78.7 18.1 115 243-371 168-289 (364)
212 TIGR02800 propeller_TolB tol-p 98.2 0.00017 3.7E-09 80.6 21.6 85 249-352 303-389 (417)
213 KOG0644 Uncharacterized conser 98.1 1.4E-06 3.1E-11 101.9 4.0 97 240-357 204-300 (1113)
214 KOG1310 WD40 repeat protein [G 98.1 4.6E-06 9.9E-11 94.1 7.7 83 260-358 42-126 (758)
215 KOG1587 Cytoplasmic dynein int 98.1 9.8E-05 2.1E-09 86.4 17.9 106 240-361 362-476 (555)
216 KOG1063 RNA polymerase II elon 98.1 7.4E-05 1.6E-09 86.6 16.0 117 244-362 165-302 (764)
217 PF02239 Cytochrom_D1: Cytochr 98.1 3.8E-05 8.3E-10 86.0 13.6 106 244-367 12-118 (369)
218 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0043 9.3E-08 69.2 29.0 102 247-365 214-338 (352)
219 KOG2111 Uncharacterized conser 98.0 0.001 2.3E-08 71.7 22.7 112 245-359 200-324 (346)
220 TIGR02800 propeller_TolB tol-p 98.0 0.00058 1.2E-08 76.4 22.1 93 248-358 258-355 (417)
221 KOG1007 WD repeat protein TSSC 98.0 1.8E-05 3.8E-10 84.0 8.8 107 243-365 188-297 (370)
222 KOG2321 WD40 repeat protein [G 98.0 7.2E-05 1.6E-09 85.2 14.0 189 64-365 155-351 (703)
223 KOG1524 WD40 repeat-containing 98.0 9.7E-05 2.1E-09 83.6 13.8 82 241-353 201-282 (737)
224 PRK00178 tolB translocation pr 98.0 0.0013 2.7E-08 74.6 23.2 51 64-114 223-279 (430)
225 PRK00178 tolB translocation pr 97.9 0.0019 4.2E-08 73.1 24.3 92 249-358 268-364 (430)
226 PRK01029 tolB translocation pr 97.9 0.0015 3.3E-08 74.6 23.3 80 262-358 320-404 (428)
227 PRK04792 tolB translocation pr 97.9 0.0015 3.2E-08 75.1 22.6 51 64-114 242-298 (448)
228 KOG4547 WD40 repeat-containing 97.9 0.00026 5.6E-09 81.1 16.0 111 242-371 74-186 (541)
229 PRK04792 tolB translocation pr 97.9 0.0013 2.7E-08 75.6 21.7 94 249-361 287-384 (448)
230 KOG0974 WD-repeat protein WDR6 97.9 4.8E-05 1E-09 91.4 10.3 98 242-357 149-246 (967)
231 KOG2321 WD40 repeat protein [G 97.9 0.00028 6.2E-09 80.5 15.7 118 248-373 155-273 (703)
232 KOG1009 Chromatin assembly com 97.9 0.0001 2.2E-09 81.2 11.7 83 260-359 115-197 (434)
233 KOG0642 Cell-cycle nuclear pro 97.8 0.0002 4.3E-09 81.6 13.9 58 242-300 505-562 (577)
234 KOG1523 Actin-related protein 97.8 0.00041 8.9E-09 74.7 14.7 111 245-359 119-238 (361)
235 KOG3881 Uncharacterized conser 97.8 0.00028 6E-09 77.6 13.5 81 243-341 264-345 (412)
236 KOG2919 Guanine nucleotide-bin 97.8 6.8E-05 1.5E-09 80.7 8.6 119 241-373 126-254 (406)
237 KOG2139 WD40 repeat protein [G 97.7 9.5E-05 2.1E-09 80.5 8.6 79 263-358 191-269 (445)
238 PF13360 PQQ_2: PQQ-like domai 97.7 0.052 1.1E-06 55.5 28.4 96 242-359 126-232 (238)
239 KOG4415 Uncharacterized conser 97.7 2E-05 4.4E-10 78.6 2.7 32 582-613 28-60 (247)
240 KOG1538 Uncharacterized conser 97.7 4.7E-05 1E-09 87.7 5.6 83 247-348 32-114 (1081)
241 KOG0649 WD40 repeat protein [G 97.6 0.0032 7E-08 65.9 17.9 62 63-124 135-200 (325)
242 KOG0974 WD-repeat protein WDR6 97.6 0.00051 1.1E-08 82.9 13.8 100 244-362 193-293 (967)
243 PF00400 WD40: WD domain, G-be 97.6 0.00019 4.1E-09 53.3 6.7 36 318-355 4-39 (39)
244 KOG4497 Uncharacterized conser 97.6 0.0002 4.3E-09 77.3 9.2 54 62-115 69-127 (447)
245 KOG1524 WD40 repeat-containing 97.6 0.00062 1.3E-08 77.3 13.0 88 245-352 163-250 (737)
246 COG2706 3-carboxymuconate cycl 97.5 0.02 4.3E-07 62.9 23.0 85 269-366 244-330 (346)
247 PRK01029 tolB translocation pr 97.5 0.0074 1.6E-07 69.0 20.8 77 269-359 281-361 (428)
248 KOG1240 Protein kinase contain 97.5 0.0059 1.3E-07 75.2 20.2 107 246-368 1171-1284(1431)
249 KOG1064 RAVE (regulator of V-A 97.5 0.00038 8.2E-09 87.7 9.6 91 246-365 2313-2406(2439)
250 TIGR03300 assembly_YfgL outer 97.5 0.024 5.2E-07 63.0 23.2 106 241-368 244-349 (377)
251 COG4946 Uncharacterized protei 97.4 0.0024 5.3E-08 71.8 14.8 107 242-367 375-486 (668)
252 PRK04043 tolB translocation pr 97.4 0.022 4.7E-07 65.2 22.8 51 64-114 213-269 (419)
253 KOG3914 WD repeat protein WDR4 97.4 0.00034 7.4E-09 77.1 7.8 97 248-362 132-228 (390)
254 KOG1240 Protein kinase contain 97.4 0.00069 1.5E-08 83.0 10.7 96 253-359 1034-1130(1431)
255 KOG4547 WD40 repeat-containing 97.4 0.013 2.7E-07 67.7 19.9 99 241-358 117-221 (541)
256 KOG2315 Predicted translation 97.4 0.0042 9.1E-08 71.2 15.7 52 246-299 334-390 (566)
257 KOG1272 WD40-repeat-containing 97.3 0.00021 4.6E-09 79.9 4.7 106 241-365 224-331 (545)
258 KOG4497 Uncharacterized conser 97.3 0.001 2.2E-08 72.0 9.6 86 245-348 68-154 (447)
259 KOG4227 WD40 repeat protein [G 97.3 0.0018 3.8E-08 71.3 11.5 105 241-360 71-182 (609)
260 KOG1310 WD40 repeat protein [G 97.3 0.00066 1.4E-08 77.3 8.2 112 240-358 64-179 (758)
261 KOG1409 Uncharacterized conser 97.3 0.0063 1.4E-07 66.4 15.3 100 244-359 171-272 (404)
262 PLN02919 haloacid dehalogenase 97.3 0.04 8.7E-07 69.9 24.5 74 272-360 807-891 (1057)
263 smart00320 WD40 WD40 repeats. 97.2 0.00078 1.7E-08 46.3 5.5 38 259-297 3-40 (40)
264 PF07433 DUF1513: Protein of u 97.2 0.14 3E-06 56.1 25.0 96 249-359 139-249 (305)
265 COG2706 3-carboxymuconate cycl 97.2 0.05 1.1E-06 59.9 20.9 114 271-404 147-262 (346)
266 KOG1275 PAB-dependent poly(A) 97.1 0.0071 1.5E-07 72.6 14.4 181 64-355 157-340 (1118)
267 PF11768 DUF3312: Protein of u 97.0 0.0056 1.2E-07 70.8 12.6 90 251-359 239-331 (545)
268 TIGR03300 assembly_YfgL outer 97.0 0.088 1.9E-06 58.5 21.8 96 240-355 281-377 (377)
269 TIGR02658 TTQ_MADH_Hv methylam 96.9 0.012 2.6E-07 65.7 13.9 102 248-365 27-144 (352)
270 KOG4227 WD40 repeat protein [G 96.9 0.001 2.3E-08 73.0 4.6 100 260-370 48-147 (609)
271 KOG1523 Actin-related protein 96.8 0.0074 1.6E-07 65.4 10.3 101 244-358 28-131 (361)
272 PF10282 Lactonase: Lactonase, 96.7 0.64 1.4E-05 51.5 25.7 80 270-362 145-227 (345)
273 KOG1645 RING-finger-containing 96.7 0.0042 9E-08 68.9 7.4 96 250-363 175-272 (463)
274 PRK04043 tolB translocation pr 96.6 0.28 6E-06 56.2 22.1 81 248-348 257-339 (419)
275 KOG0280 Uncharacterized conser 96.6 0.012 2.5E-07 63.3 9.9 103 244-361 139-245 (339)
276 KOG1354 Serine/threonine prote 96.4 0.0097 2.1E-07 65.0 8.2 107 240-359 228-361 (433)
277 KOG4532 WD40-like repeat conta 96.4 0.13 2.7E-06 55.1 15.7 61 240-301 217-284 (344)
278 KOG2315 Predicted translation 96.3 0.022 4.7E-07 65.5 10.7 90 246-357 292-390 (566)
279 PF03178 CPSF_A: CPSF A subuni 96.3 0.27 5.8E-06 53.7 18.7 95 248-359 107-204 (321)
280 PF15492 Nbas_N: Neuroblastoma 96.2 1.1 2.3E-05 48.5 22.1 121 245-365 116-267 (282)
281 PF03178 CPSF_A: CPSF A subuni 96.1 1.7 3.6E-05 47.5 24.0 50 64-113 62-118 (321)
282 PF04762 IKI3: IKI3 family; I 96.1 0.61 1.3E-05 58.6 22.8 98 248-360 237-336 (928)
283 KOG4190 Uncharacterized conser 96.0 0.02 4.3E-07 65.5 8.4 125 240-367 749-916 (1034)
284 PLN02919 haloacid dehalogenase 96.0 2.3 4.9E-05 54.5 27.5 89 270-359 741-835 (1057)
285 KOG4532 WD40-like repeat conta 95.9 0.12 2.5E-06 55.3 12.6 103 246-364 138-240 (344)
286 PF08450 SGL: SMP-30/Gluconola 95.8 2.9 6.3E-05 43.6 26.1 99 248-357 115-213 (246)
287 PF15492 Nbas_N: Neuroblastoma 95.7 0.92 2E-05 49.0 18.6 33 267-300 228-260 (282)
288 KOG4640 Anaphase-promoting com 95.5 0.054 1.2E-06 63.3 9.2 77 270-365 22-100 (665)
289 KOG2314 Translation initiation 95.5 0.098 2.1E-06 60.4 11.0 83 247-347 281-366 (698)
290 PRK11138 outer membrane biogen 95.5 2.4 5.1E-05 47.7 22.3 58 63-120 129-188 (394)
291 KOG1912 WD40 repeat protein [G 95.4 0.32 7E-06 58.2 15.3 106 240-359 439-553 (1062)
292 KOG2695 WD40 repeat protein [G 95.4 0.039 8.4E-07 60.5 7.4 105 242-359 268-378 (425)
293 KOG2695 WD40 repeat protein [G 95.4 0.057 1.2E-06 59.3 8.6 113 246-373 232-348 (425)
294 COG3386 Gluconolactonase [Carb 95.3 3.3 7.2E-05 45.7 22.3 100 248-357 143-243 (307)
295 PF13360 PQQ_2: PQQ-like domai 95.2 1.8 3.9E-05 44.1 18.8 55 64-118 46-102 (238)
296 smart00320 WD40 WD40 repeats. 95.2 0.036 7.9E-07 37.6 4.3 28 328-355 13-40 (40)
297 COG5354 Uncharacterized protei 95.1 0.64 1.4E-05 53.5 15.8 203 248-482 108-332 (561)
298 KOG4714 Nucleoporin [Nuclear s 95.0 0.049 1.1E-06 57.9 6.5 112 242-355 196-316 (319)
299 KOG2066 Vacuolar assembly/sort 94.9 0.095 2.1E-06 62.7 9.2 94 240-360 51-149 (846)
300 PF07433 DUF1513: Protein of u 94.9 7 0.00015 43.1 22.7 35 267-301 215-249 (305)
301 KOG4190 Uncharacterized conser 94.6 0.03 6.4E-07 64.1 4.0 85 260-356 727-811 (1034)
302 PRK11138 outer membrane biogen 94.6 4.4 9.6E-05 45.6 21.4 55 64-118 215-282 (394)
303 KOG1275 PAB-dependent poly(A) 94.5 0.14 3E-06 62.1 9.1 54 62-115 195-259 (1118)
304 KOG2314 Translation initiation 94.3 0.11 2.4E-06 60.0 7.6 95 270-390 212-317 (698)
305 PF12894 Apc4_WD40: Anaphase-p 94.1 0.14 3E-06 40.9 5.7 31 327-357 11-41 (47)
306 COG0823 TolB Periplasmic compo 94.1 0.87 1.9E-05 52.4 14.5 51 64-114 218-274 (425)
307 KOG3621 WD40 repeat-containing 93.9 0.14 3E-06 60.7 7.5 104 242-358 49-155 (726)
308 KOG1354 Serine/threonine prote 93.9 0.12 2.6E-06 56.7 6.6 79 269-361 26-120 (433)
309 KOG0280 Uncharacterized conser 93.9 0.18 3.8E-06 54.5 7.6 104 241-361 181-288 (339)
310 KOG2041 WD40 repeat protein [G 93.9 0.1 2.2E-06 61.6 6.3 101 241-356 29-144 (1189)
311 KOG0309 Conserved WD40 repeat- 93.8 0.45 9.7E-06 56.8 11.2 100 245-361 134-236 (1081)
312 KOG4640 Anaphase-promoting com 93.6 0.21 4.5E-06 58.7 8.1 59 241-301 35-94 (665)
313 cd00216 PQQ_DH Dehydrogenases 93.5 8.4 0.00018 45.0 21.3 57 64-120 71-138 (488)
314 KOG1064 RAVE (regulator of V-A 93.2 1.1 2.3E-05 58.4 13.8 99 244-360 2269-2369(2439)
315 COG5354 Uncharacterized protei 93.1 0.17 3.7E-06 58.0 6.3 93 253-365 17-124 (561)
316 PF11768 DUF3312: Protein of u 93.0 0.36 7.7E-06 56.4 8.9 59 240-301 273-331 (545)
317 PF08450 SGL: SMP-30/Gluconola 92.9 1.6 3.4E-05 45.6 12.9 98 248-361 60-168 (246)
318 COG5170 CDC55 Serine/threonine 92.9 0.22 4.8E-06 54.1 6.5 104 240-358 236-368 (460)
319 KOG3914 WD repeat protein WDR4 92.8 1.8 4E-05 48.5 13.5 60 240-301 165-225 (390)
320 KOG1912 WD40 repeat protein [G 92.7 1.2 2.6E-05 53.6 12.6 100 242-358 83-187 (1062)
321 KOG1334 WD40 repeat protein [G 92.6 0.22 4.8E-06 56.8 6.2 116 240-360 296-427 (559)
322 PRK02888 nitrous-oxide reducta 92.2 1.4 3E-05 52.7 12.5 113 244-360 211-354 (635)
323 PF04841 Vps16_N: Vps16, N-ter 92.1 15 0.00033 42.1 20.5 47 63-110 60-109 (410)
324 KOG0882 Cyclophilin-related pe 91.7 0.65 1.4E-05 52.8 8.6 114 245-362 119-236 (558)
325 COG4946 Uncharacterized protei 91.1 4.3 9.4E-05 46.7 14.2 95 247-360 340-434 (668)
326 PF12894 Apc4_WD40: Anaphase-p 91.0 0.57 1.2E-05 37.4 5.3 29 269-298 12-40 (47)
327 PF08553 VID27: VID27 cytoplas 90.6 4.3 9.3E-05 50.1 14.8 59 239-299 589-647 (794)
328 PF04053 Coatomer_WDAD: Coatom 90.3 12 0.00026 43.5 17.4 58 280-358 117-174 (443)
329 KOG2066 Vacuolar assembly/sort 90.2 2.2 4.8E-05 51.6 11.5 106 240-365 85-195 (846)
330 KOG4714 Nucleoporin [Nuclear s 90.1 0.35 7.5E-06 51.7 4.4 94 248-358 159-255 (319)
331 KOG1334 WD40 repeat protein [G 90.1 0.33 7.2E-06 55.4 4.5 88 260-363 134-223 (559)
332 KOG2079 Vacuolar assembly/sort 89.7 0.72 1.6E-05 57.2 7.1 58 243-301 104-162 (1206)
333 PF06433 Me-amine-dh_H: Methyl 89.6 0.82 1.8E-05 50.9 7.0 64 57-120 262-330 (342)
334 KOG1832 HIV-1 Vpr-binding prot 88.9 0.23 4.9E-06 60.1 2.2 106 240-364 1115-1221(1516)
335 COG0823 TolB Periplasmic compo 87.9 2.1 4.6E-05 49.3 9.1 95 248-363 218-318 (425)
336 PF10313 DUF2415: Uncharacteri 87.7 1.2 2.6E-05 35.0 4.8 31 269-300 1-34 (43)
337 PF00930 DPPIV_N: Dipeptidyl p 87.3 1.5 3.2E-05 48.8 7.2 103 247-359 22-133 (353)
338 PF14783 BBS2_Mid: Ciliary BBS 87.1 6.2 0.00013 37.3 10.0 65 271-356 2-70 (111)
339 cd00216 PQQ_DH Dehydrogenases 86.4 60 0.0013 37.9 20.2 57 64-120 175-274 (488)
340 COG5170 CDC55 Serine/threonine 86.4 1.8 3.9E-05 47.4 6.9 86 269-359 27-119 (460)
341 KOG2114 Vacuolar assembly/sort 86.1 3.4 7.3E-05 50.5 9.6 108 241-355 38-153 (933)
342 KOG3617 WD40 and TPR repeat-co 86.1 1.1 2.4E-05 54.3 5.6 96 245-361 38-135 (1416)
343 KOG2079 Vacuolar assembly/sort 85.8 1.1 2.5E-05 55.5 5.6 79 273-368 92-171 (1206)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.6 66 0.0014 38.2 20.1 53 247-301 440-492 (527)
345 PRK13616 lipoprotein LpqB; Pro 85.5 5.7 0.00012 47.8 11.3 83 270-365 398-485 (591)
346 KOG2041 WD40 repeat protein [G 85.3 5 0.00011 48.2 10.2 96 242-357 87-186 (1189)
347 KOG4649 PQQ (pyrrolo-quinoline 85.2 28 0.00061 37.8 14.8 57 63-119 72-132 (354)
348 PF10168 Nup88: Nuclear pore c 84.7 18 0.00039 44.6 15.1 93 269-364 85-186 (717)
349 PF00930 DPPIV_N: Dipeptidyl p 84.7 71 0.0015 35.5 20.8 56 63-119 22-79 (353)
350 KOG0882 Cyclophilin-related pe 84.6 5.5 0.00012 45.6 9.8 106 253-360 186-308 (558)
351 PF14655 RAB3GAP2_N: Rab3 GTPa 84.3 6.8 0.00015 45.0 10.7 91 260-366 299-407 (415)
352 KOG0309 Conserved WD40 repeat- 84.1 2.7 5.8E-05 50.6 7.4 107 249-371 92-203 (1081)
353 PF06433 Me-amine-dh_H: Methyl 83.9 41 0.00089 37.8 16.1 51 249-301 270-322 (342)
354 PF08596 Lgl_C: Lethal giant l 83.8 7.6 0.00016 44.4 10.8 84 259-358 77-174 (395)
355 PF02897 Peptidase_S9_N: Proly 82.3 10 0.00022 42.7 11.2 75 270-361 125-214 (414)
356 KOG1920 IkappaB kinase complex 81.5 51 0.0011 42.3 17.1 97 248-359 222-324 (1265)
357 PF04762 IKI3: IKI3 family; I 81.3 18 0.00039 45.9 13.7 74 268-355 75-148 (928)
358 COG3386 Gluconolactonase [Carb 81.0 40 0.00086 37.3 14.8 102 247-365 46-157 (307)
359 PF10313 DUF2415: Uncharacteri 79.8 5.4 0.00012 31.5 5.4 29 330-358 3-34 (43)
360 PRK02888 nitrous-oxide reducta 79.7 14 0.00031 44.4 11.4 106 247-358 295-405 (635)
361 COG3391 Uncharacterized conser 78.7 32 0.00069 38.9 13.6 94 247-358 95-191 (381)
362 PRK13616 lipoprotein LpqB; Pro 78.4 10 0.00022 45.6 9.9 102 247-362 429-530 (591)
363 KOG4649 PQQ (pyrrolo-quinoline 76.5 1.2E+02 0.0027 33.1 18.1 57 64-120 33-91 (354)
364 PF14783 BBS2_Mid: Ciliary BBS 76.4 52 0.0011 31.2 11.9 88 241-352 18-109 (111)
365 KOG3617 WD40 and TPR repeat-co 75.0 5.7 0.00012 48.6 6.3 57 242-299 75-131 (1416)
366 PF14781 BBS2_N: Ciliary BBSom 74.7 17 0.00036 35.6 8.3 46 73-118 37-89 (136)
367 COG3490 Uncharacterized protei 73.7 41 0.00089 37.0 11.7 54 66-120 51-109 (366)
368 KOG1409 Uncharacterized conser 73.5 19 0.00041 40.3 9.3 114 256-373 102-244 (404)
369 PF12234 Rav1p_C: RAVE protein 72.7 33 0.00072 41.6 12.0 100 248-356 51-155 (631)
370 PF02897 Peptidase_S9_N: Proly 72.7 32 0.0007 38.7 11.6 99 245-358 147-261 (414)
371 PF08553 VID27: VID27 cytoplas 72.6 28 0.00061 43.3 11.6 98 243-355 499-604 (794)
372 KOG2444 WD40 repeat protein [G 72.0 8.5 0.00018 40.7 6.1 105 240-361 72-181 (238)
373 PF05694 SBP56: 56kDa selenium 72.0 35 0.00075 39.6 11.3 111 242-362 216-347 (461)
374 PF07676 PD40: WD40-like Beta 71.9 8.4 0.00018 28.5 4.6 26 329-354 10-38 (39)
375 PF07676 PD40: WD40-like Beta 71.8 11 0.00025 27.8 5.2 31 266-296 6-38 (39)
376 TIGR03074 PQQ_membr_DH membran 71.4 2.7E+02 0.006 34.8 22.4 57 64-120 204-288 (764)
377 PF08728 CRT10: CRT10; InterP 70.6 1.7E+02 0.0037 36.2 17.3 74 269-356 164-245 (717)
378 KOG1832 HIV-1 Vpr-binding prot 70.0 5.7 0.00012 48.8 4.8 87 259-362 1092-1180(1516)
379 PF05096 Glu_cyclase_2: Glutam 69.4 1.8E+02 0.0038 31.8 21.5 57 63-119 67-127 (264)
380 COG3391 Uncharacterized conser 68.0 86 0.0019 35.5 13.6 94 246-358 138-240 (381)
381 KOG2395 Protein involved in va 66.7 53 0.0011 38.9 11.4 57 240-298 443-499 (644)
382 KOG1920 IkappaB kinase complex 65.3 29 0.00063 44.3 9.6 68 269-354 69-136 (1265)
383 PF14870 PSII_BNR: Photosynthe 64.8 40 0.00087 37.3 9.8 72 266-355 142-213 (302)
384 KOG4460 Nuclear pore complex, 64.2 65 0.0014 38.1 11.5 89 270-361 105-202 (741)
385 TIGR03075 PQQ_enz_alc_DH PQQ-d 63.3 3.2E+02 0.0069 32.5 22.0 57 64-120 79-148 (527)
386 PF04053 Coatomer_WDAD: Coatom 61.8 19 0.00041 41.9 6.9 46 64-110 126-173 (443)
387 PF10647 Gmad1: Lipoprotein Lp 59.3 88 0.0019 33.3 11.1 76 270-359 67-146 (253)
388 KOG1645 RING-finger-containing 57.9 37 0.00079 38.8 7.9 58 242-301 210-268 (463)
389 KOG3621 WD40 repeat-containing 56.8 25 0.00055 42.5 6.8 76 268-359 33-108 (726)
390 PF13570 PQQ_3: PQQ-like domai 54.7 21 0.00046 26.7 4.0 37 75-111 2-40 (40)
391 PF12234 Rav1p_C: RAVE protein 53.9 1.2E+02 0.0025 37.1 11.9 80 263-358 24-105 (631)
392 PF07569 Hira: TUP1-like enhan 53.7 23 0.0005 37.1 5.4 38 78-115 7-45 (219)
393 PF12657 TFIIIC_delta: Transcr 53.2 1E+02 0.0022 30.8 9.8 31 329-359 87-123 (173)
394 PF06977 SdiA-regulated: SdiA- 52.5 1.8E+02 0.004 31.2 12.0 83 263-362 16-99 (248)
395 PF01011 PQQ: PQQ enzyme repea 52.5 28 0.0006 26.0 4.2 28 94-121 2-29 (38)
396 TIGR02276 beta_rpt_yvtn 40-res 52.4 86 0.0019 23.0 7.0 24 278-301 1-24 (42)
397 KOG1897 Damage-specific DNA bi 50.9 6.6E+02 0.014 32.3 17.8 95 248-357 848-942 (1096)
398 KOG1008 Uncharacterized conser 50.6 6.3 0.00014 46.9 0.7 98 246-362 127-231 (783)
399 PF00780 CNH: CNH domain; Int 47.7 1.2E+02 0.0025 32.0 9.7 53 63-115 113-170 (275)
400 PF14583 Pectate_lyase22: Olig 46.6 1.6E+02 0.0034 33.9 10.8 26 332-357 355-381 (386)
401 PF04841 Vps16_N: Vps16, N-ter 46.3 2.3E+02 0.005 32.5 12.4 30 269-299 217-246 (410)
402 PF05787 DUF839: Bacterial pro 46.2 42 0.00091 39.9 6.6 70 273-345 440-519 (524)
403 KOG0183 20S proteasome, regula 45.9 8.6 0.00019 40.1 0.7 22 468-489 6-29 (249)
404 PF07569 Hira: TUP1-like enhan 45.4 1.3E+02 0.0029 31.5 9.5 74 276-359 18-97 (219)
405 PF05096 Glu_cyclase_2: Glutam 44.2 1.2E+02 0.0026 33.0 9.0 58 63-120 109-167 (264)
406 TIGR03074 PQQ_membr_DH membran 44.2 7.5E+02 0.016 31.1 20.6 55 246-301 412-479 (764)
407 PF10214 Rrn6: RNA polymerase 43.9 6.8E+02 0.015 31.3 16.8 73 269-359 204-278 (765)
408 smart00564 PQQ beta-propeller 43.1 56 0.0012 22.9 4.5 26 93-118 7-32 (33)
409 KOG1916 Nuclear protein, conta 41.8 18 0.00039 44.9 2.6 56 242-299 199-265 (1283)
410 KOG2395 Protein involved in va 41.6 1.8E+02 0.0039 34.6 10.4 102 242-356 350-458 (644)
411 PRK10115 protease 2; Provision 40.8 1.3E+02 0.0029 36.9 10.0 73 269-359 127-209 (686)
412 COG3490 Uncharacterized protei 39.8 1.3E+02 0.0028 33.4 8.3 78 246-346 88-180 (366)
413 PF14870 PSII_BNR: Photosynthe 38.8 2.2E+02 0.0048 31.5 10.3 84 252-348 170-253 (302)
414 PF06977 SdiA-regulated: SdiA- 38.8 4.6E+02 0.01 28.2 12.5 108 241-358 37-148 (248)
415 PF01731 Arylesterase: Arylest 38.3 1.4E+02 0.003 27.0 7.1 49 248-299 36-84 (86)
416 PF10214 Rrn6: RNA polymerase 38.3 1.4E+02 0.0031 37.1 9.7 83 269-360 146-235 (765)
417 KOG1008 Uncharacterized conser 37.7 12 0.00025 44.9 0.2 102 244-357 76-184 (783)
418 PF12768 Rax2: Cortical protei 36.8 3.7E+02 0.008 29.5 11.5 55 247-301 15-74 (281)
419 PF11715 Nup160: Nucleoporin N 36.7 1.5E+02 0.0032 35.0 9.2 35 330-364 217-255 (547)
420 PF03022 MRJP: Major royal jel 36.6 1.9E+02 0.0042 31.5 9.4 58 63-120 33-106 (287)
421 PF05694 SBP56: 56kDa selenium 35.5 68 0.0015 37.3 5.8 47 63-109 221-276 (461)
422 TIGR03606 non_repeat_PQQ dehyd 35.4 1.2E+02 0.0025 35.6 7.8 29 85-113 31-62 (454)
423 KOG2114 Vacuolar assembly/sort 34.6 3.1E+02 0.0068 34.4 11.3 96 249-357 93-201 (933)
424 PF14761 HPS3_N: Hermansky-Pud 34.6 2E+02 0.0044 30.4 8.7 58 274-348 23-80 (215)
425 PF08596 Lgl_C: Lethal giant l 34.2 2.9E+02 0.0062 31.8 10.7 92 270-367 3-123 (395)
426 KOG2377 Uncharacterized conser 34.0 83 0.0018 36.8 6.1 88 267-369 65-153 (657)
427 COG3211 PhoX Predicted phospha 33.5 99 0.0021 37.0 6.8 65 271-345 502-571 (616)
428 PF10647 Gmad1: Lipoprotein Lp 31.8 2.5E+02 0.0054 29.9 9.2 67 270-355 25-93 (253)
429 COG3204 Uncharacterized protei 31.2 2.4E+02 0.0052 31.4 8.8 86 265-366 82-167 (316)
430 TIGR02604 Piru_Ver_Nterm putat 30.0 2.4E+02 0.0052 31.6 9.1 21 268-288 123-143 (367)
431 PF07995 GSDH: Glucose / Sorbo 29.2 3E+02 0.0066 30.5 9.6 80 259-352 244-330 (331)
432 PF00780 CNH: CNH domain; Int 29.1 1.9E+02 0.0041 30.3 7.7 48 73-120 216-265 (275)
433 PF07995 GSDH: Glucose / Sorbo 27.9 2.8E+02 0.0061 30.7 9.0 25 271-297 4-28 (331)
434 KOG1916 Nuclear protein, conta 27.6 22 0.00048 44.1 0.3 94 246-357 151-265 (1283)
435 PRK13684 Ycf48-like protein; P 27.5 2.9E+02 0.0062 30.7 9.1 67 268-352 172-238 (334)
436 PF12341 DUF3639: Protein of u 25.8 1.3E+02 0.0029 21.5 3.8 24 330-355 4-27 (27)
437 TIGR03032 conserved hypothetic 25.4 2.8E+02 0.006 31.2 8.1 57 63-119 222-299 (335)
438 TIGR03606 non_repeat_PQQ dehyd 25.3 6.8E+02 0.015 29.4 11.8 30 269-299 30-59 (454)
439 PF01731 Arylesterase: Arylest 24.9 1.1E+02 0.0025 27.5 4.3 28 331-358 57-85 (86)
440 TIGR02608 delta_60_rpt delta-6 24.6 1.7E+02 0.0037 24.3 4.9 32 330-361 3-39 (55)
441 PF15390 DUF4613: Domain of un 24.3 7.1E+02 0.015 30.4 11.5 119 84-297 57-184 (671)
442 PF03022 MRJP: Major royal jel 24.0 9.6E+02 0.021 26.1 13.8 54 248-301 34-98 (287)
443 PF03088 Str_synth: Strictosid 23.6 3.9E+02 0.0084 24.3 7.5 17 330-346 59-75 (89)
444 PF07250 Glyoxal_oxid_N: Glyox 23.1 2.4E+02 0.0051 30.4 7.0 89 249-348 47-138 (243)
445 PF03088 Str_synth: Strictosid 23.0 1.8E+02 0.004 26.4 5.3 53 243-296 32-85 (89)
446 TIGR03118 PEPCTERM_chp_1 conse 21.1 7.2E+02 0.016 28.0 10.2 92 242-350 216-327 (336)
447 PRK10115 protease 2; Provision 21.0 8.3E+02 0.018 30.1 12.0 98 246-358 151-256 (686)
448 TIGR02604 Piru_Ver_Nterm putat 20.9 5.6E+02 0.012 28.6 9.9 17 270-286 15-31 (367)
449 PF14269 Arylsulfotran_2: Aryl 20.2 3.4E+02 0.0075 29.8 7.8 72 270-357 145-220 (299)
No 1
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=100.00 E-value=1.7e-59 Score=492.24 Aligned_cols=241 Identities=47% Similarity=0.725 Sum_probs=213.2
Q ss_pred CCCeeeeeeEEeecCC-CCCCCcccCccccccC-CcCCCCCceeeeeeccCCCCcccccCCcccccccEEEEccCccEEE
Q 004015 404 GPPVTLSVVSRIRNGN-NGWRGTVSGAAAAATG-RVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQ 481 (779)
Q Consensus 404 ~pp~~ls~v~ri~~~~-~~~~~~v~~~a~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~p~G~liq 481 (779)
|||++|+||+||||++ +||.|+|+++|++++| |.+.++|++|+.||+|.+.+..+..+...++++|||||+|+|+|||
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 5799999999999999 8999999999999999 8899999999999999777766666776789999999999999999
Q ss_pred EeeeeccCCCccCCcCCCCCCCCCC-CCCCceEEEeeeccccccccCccccccc-cccccCCCCCcCC-CcccccccccC
Q 004015 482 YALRISTGLDVTMGVPGLGSAYDSV-PEDDPRLVVEAIQKWNICQKQARRERED-NIDIYGDNGTLDS-NKIYPEEVKDG 558 (779)
Q Consensus 482 y~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Vep~~~Wdvcr~~~~~e~e~-~~~~~~~~~~~~~-~~~~~~~~~~~ 558 (779)
|+|+|+.+.+++.+.++.++++++. +|+++||+|||+|||||||+++|+|+++ +..+++.++..+. ++|+++..+++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDCRKG 160 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhccccccccc
Confidence 9999999999988888899999888 7799999999999999999999999999 7777888765444 56777777776
Q ss_pred C-cccCCCccccccccCCcccccceeeeeeeeeecCC-CcccccCCeeEEEEcccCcc-ccccccccc--ceEEEeeccc
Q 004015 559 N-FASTEANGVIEKTKVSPEDKHHLYISEAELQMHPP-RIPLWAKPQIYFQSMMIKDF-KMGEENFLK--GEIEIERFPT 633 (779)
Q Consensus 559 ~-~~~~~~~~~~~~~~~~~~e~~~~ylSnaEv~~h~~-~~piW~~~~~~F~~m~~~~~-~~~~~~~~~--~~~eie~~~~ 633 (779)
+ +++.+...+ .+.+++++|++++||||||||||++ ||||||||||+||+|.+++. ++...+..+ ||||||++|+
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~EIE~~~~ 239 (251)
T PF12490_consen 161 NSVNPSNDSYV-SKESDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIEIEKIPT 239 (251)
T ss_pred CCccccccccc-cccCCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCceeeccccc
Confidence 5 666654444 6778889999999999999999999 69999999999999998774 445556667 9999999999
Q ss_pred cccccccCCccc
Q 004015 634 RMIEARSKDLVP 645 (779)
Q Consensus 634 ~~~~~~~~~l~p 645 (779)
|+||+|+|||||
T Consensus 240 ~~ve~r~k~l~p 251 (251)
T PF12490_consen 240 REVEIRRKDLLP 251 (251)
T ss_pred cceeeeccccCC
Confidence 999999999998
No 2
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6e-45 Score=406.10 Aligned_cols=553 Identities=27% Similarity=0.295 Sum_probs=378.2
Q ss_pred CCCCCCCCCCCcccCccCCCCcEEEEecCCCCcCCccccCCCcccccCCCCCcCCCCC-CCcCCCEEEEEECCCCcEEEE
Q 004015 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGN-GSSVPTVVHFYSLRSQSYVHM 79 (779)
Q Consensus 1 ~~~lp~p~~~~~~~d~F~~~rPLLav~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~tVrIWDL~Tge~V~t 79 (779)
|||+|+|+.+..- +.|+.++|++|+|...++ +- .+++ ..+|. ....+....++|+++..++|.
T Consensus 90 ~sm~~~pl~sg~~-~gf~ss~avpavv~~t~S-~p-~I~~-------------S~~Gse~d~t~an~~v~dl~S~~yah~ 153 (788)
T KOG2109|consen 90 SSMDKSPLSSGPD-SGFESSDAVPAVVRTTTS-PP-TIPP-------------SQTGSEQDSTQANEMVVDLMSLDYAHA 153 (788)
T ss_pred cccCCCCccCCCC-CccccCCceeeecccccC-CC-cCCC-------------CCCcceecccccccceeccccccchhc
Confidence 6899999999764 569999999999973221 11 1111 01111 112345677999999999999
Q ss_pred EeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecCceeEeeCCCceecCC
Q 004015 80 LKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSND 159 (779)
Q Consensus 80 Lkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~s 159 (779)
++|+ +|+|||+.|++..+.+.+++.+... .+++|+|+++++||+||+.........
T Consensus 154 l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l~-----l~VGYGplaVg~rWaaya~~~a~~vss 209 (788)
T KOG2109|consen 154 LPFR-------------------QIHCFDAPTLEIDSMNTINTKPRLL-----LSVGYGPLAVGRRWAAYAQTLANQVSS 209 (788)
T ss_pred cccc-------------------ccccccCcccCCchhhccccccccc-----eeeccccccceeeeeeeccCcchhhhh
Confidence 9997 8999999999999999887765432 358999999999999999765432211
Q ss_pred CccCCcccccccccccc--cCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCCCcc
Q 004015 160 GRVNPQHLMQSRSFSGF--ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTV 237 (779)
Q Consensus 160 grvspq~ls~s~~~s~~--~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v 237 (779)
+.+.+..++++. ...+..++.||++.+|++|.||.++||.+|+.+++||..+.+++.+.-.......++ |-+
T Consensus 210 -----~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~gpglgg~~~~~v-Grv 283 (788)
T KOG2109|consen 210 -----HLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTGPGLGGFEEVLV-GRV 283 (788)
T ss_pred -----ccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCCCCCCCcCceec-ccc
Confidence 111222333433 235667899999999999999999999999999999999877764432221221111 111
Q ss_pred CCcccccCC-CCe--EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 238 NGHFPDADN-VGM--VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 238 ~g~~~s~~~-dG~--V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.. .++.. -|+ +.+-|+.+...+.+|++|+.+|++|+|+++|.+|++++..|+.|++|++++....... +.
T Consensus 284 g~--vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~-~~---- 356 (788)
T KOG2109|consen 284 GP--VSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNV-SD---- 356 (788)
T ss_pred cc--ccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccc-cc----
Confidence 11 12222 344 8889999999999999999999999999999999999999999999999875221100 00
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCccCCCcCCcceecCCCCCCCC
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQM 394 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s~l~~ 394 (779)
..+.--+|+++.+.|++|||+-+.+|++.+|.+|+- +.+. .+.-.+|+-.+.+..
T Consensus 357 -qs~~~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------P~ls-------------~t~~lp~~A~~Sl~~ 411 (788)
T KOG2109|consen 357 -QSLVVSPRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------PALS-------------LTCQLPAYADTSLDL 411 (788)
T ss_pred -cccccchhcchHHHHHHHhhhhhcceEeecccCCCC-----------cccc-------------cccccchhhchhhhc
Confidence 111111589999999999999999999999966654 1111 111223333332211
Q ss_pred CCCCccccCCCCeeeeeeEEeecCCCCCCCcccCccccccCCcCCCCCceeeeeeccCCCCcccccCCcccccccEEEEc
Q 004015 395 PNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFS 474 (779)
Q Consensus 395 ~~~~~l~~~~pp~~ls~v~ri~~~~~~~~~~v~~~a~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~ 474 (779)
.-++. .++-...|...++++--+.-..++| .++...++++.+..||-...-. . ......+..|+|+.
T Consensus 412 -gl~s~-g~~aa~gla~~sag~~a~s~~asSv-------~s~s~~pd~ks~gv~~gsv~k~---~-q~~~~~l~~llv~~ 478 (788)
T KOG2109|consen 412 -GLQSS-GGLAAEGLATSSAGYTAHSYTASSV-------FSRSVKPDSKSVGVGSGSVTKA---N-QGVITVLNLLLVGE 478 (788)
T ss_pred -ccccc-Ccccceeeeecccccccccccccee-------eccccccchhhccceeeecccc---C-ccchhhhhheeeec
Confidence 11111 1112344666666665432222222 3344444445555555441110 0 12245799999999
Q ss_pred cCc-cEEEEeeeeccCCCccCC-cCCCCCCCCCCCCCC-ceEEEeeeccccccccCccccccccccccCCCCCcCCCccc
Q 004015 475 PSG-CMIQYALRISTGLDVTMG-VPGLGSAYDSVPEDD-PRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIY 551 (779)
Q Consensus 475 p~G-~liqy~L~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~Vep~~~Wdvcr~~~~~e~e~~~~~~~~~~~~~~~~~~ 551 (779)
|+| +|+||.|.++-+....+. ....+.-.+...+++ .+|.|+|++.|++|++..|+|++++ |.. .-|..
T Consensus 479 psGd~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r----G~T----saKv~ 550 (788)
T KOG2109|consen 479 PSGDGVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNR----GST----SAKVV 550 (788)
T ss_pred CCCCceeEEEeeccCccceeeecccccceecccccccccceEEeecccccHHHhhhhhhhhccC----CCc----cceee
Confidence 999 999999999988777663 334455556667888 9999999999999999999999875 221 22555
Q ss_pred ccccccCCcccCCCccccccccCCcccccceeeeeeeeeecCCCcccccCCeeEEEEcccCccccccccc--ccceEEEe
Q 004015 552 PEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENF--LKGEIEIE 629 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ylSnaEv~~h~~~~piW~~~~~~F~~m~~~~~~~~~~~~--~~~~~eie 629 (779)
...++++..-.. ...+...+.-+++|.|+-++|++||.. +|||+|.+ .||.|...+.+.+.++. .++|.||+
T Consensus 551 ~~afs~dsrw~A----~~t~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFhrsagl~~d~~~~~s~ggg~e~ei~ 624 (788)
T KOG2109|consen 551 STAFSEDSRWLA----ITTNHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFHRSAGLTDDADVTASIGGGKEREIA 624 (788)
T ss_pred eeEeecchhhhh----hhhcCCceeeeeeccccccccceecCC-chhccchh-hhccccCCCccccccccCCCCccceec
Confidence 555554331111 112334446789999999999999999 99999999 99999987765554443 44599999
Q ss_pred eccccccccccCCcccccccccCccccccc
Q 004015 630 RFPTRMIEARSKDLVPVFDYLQSPKFSQAR 659 (779)
Q Consensus 630 ~~~~~~~~~~~~~l~pv~~~~~~~~~~~~~ 659 (779)
++-++.+|.|+||||||++ .+|+|-+-.|
T Consensus 625 ~~~~~t~e~r~~dllPvy~-~tS~rsr~~~ 653 (788)
T KOG2109|consen 625 DSCSYTKEHRIADLLPVYA-KTSGRSRVGP 653 (788)
T ss_pred ccccccccccccccCCccc-ccCccccccC
Confidence 9999999999999999999 6776655433
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.96 E-value=3.7e-28 Score=258.24 Aligned_cols=179 Identities=30% Similarity=0.540 Sum_probs=159.0
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCCcEEEEEecC-CcccCCCCCCCcccccccee
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTN-PIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~-p~~~~~p~s~~~~~~~~piA 141 (779)
|+.+++++++.+..|+.+.|+++|.+|++|++.|+|++++.|||||+.+++.++++.+. +++.+ .+|
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~g------------l~A 134 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKG------------LCA 134 (391)
T ss_pred CceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccc------------eEe
Confidence 48899999999999999999999999999999999999999999999999999999886 44332 234
Q ss_pred ecC----ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 142 VGP----RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 142 lgp----RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+++ .+|||++
T Consensus 135 lS~n~~n~ylAyp~------------------------------------------------------------------ 148 (391)
T KOG2110|consen 135 LSPNNANCYLAYPG------------------------------------------------------------------ 148 (391)
T ss_pred eccCCCCceEEecC------------------------------------------------------------------
Confidence 433 2555541
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
....|.|.|||+.+-+++..+.+|.++|.||+||++|++|||||+.||+||||.
T Consensus 149 --------------------------s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~ 202 (391)
T KOG2110|consen 149 --------------------------STTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS 202 (391)
T ss_pred --------------------------CCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence 012478999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+..+ +.+|.|+||.....|++++||||+++|+++|.-+|||||.|...
T Consensus 203 v~~G--------------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 203 VPEG--------------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred cCCc--------------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9876 78999999998888999999999999999999999999999764
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=227.02 Aligned_cols=186 Identities=27% Similarity=0.388 Sum_probs=157.1
Q ss_pred CCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCC-CCcEEEEEecCCcccCCCCCCCccccc
Q 004015 59 GSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 59 ~~~~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~-T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|+.|-|||-....++.++.|.++|.+|++.+..|+|.++++|+||... +.+.++.+.|..+|.|.+. +
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~-------~ 142 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCS-------L 142 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEe-------e
Confidence 5778999999999999999999999999999999999999999999999998 7899999999877654320 0
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.|. .+...|
T Consensus 143 ~~~-~~k~~L---------------------------------------------------------------------- 151 (346)
T KOG2111|consen 143 CPT-SNKSLL---------------------------------------------------------------------- 151 (346)
T ss_pred cCC-CCceEE----------------------------------------------------------------------
Confidence 000 000112
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
++|+ ...|.|+|-|+...+. -..++||.+.|.||+.+-+|++|||||..||.|||
T Consensus 152 ---------afPg--------------~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 152 ---------AFPG--------------FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred ---------EcCC--------------CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 2222 2347899999887655 46789999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
||..++ ..+++++||...|.|++|+||||+.|||++|+.||+|||.+...
T Consensus 209 Fdt~~g--------------~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 209 FDTEDG--------------TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEcCCC--------------cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999876 68899999999999999999999999999999999999999764
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=185.78 Aligned_cols=261 Identities=19% Similarity=0.255 Sum_probs=179.5
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAICQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..|||||-+.||.|..+|++ .+.|..+.+. ++.||++.-..|++||+++.. .+.++..+..
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-------------- 84 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-------------- 84 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC--------------
Confidence 48999999999999999999 6899999995 788999988999999999876 4677766521
Q ss_pred cceee----cCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeeccccc-chh----ceeeecCCccc
Q 004015 138 GPLAV----GPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK-HLA----AGIVNLGDLGY 206 (779)
Q Consensus 138 ~piAl----gpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK-~La----~Gl~~lGd~~~ 206 (779)
|.+++ ..||+..++.+ ..+|+.-..++|..-... +.|..+....-+ +|. .|.+.++|.+.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---------spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---------SPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---------CCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 22333 35999988775 456653223333221110 111111111000 111 24445555543
Q ss_pred cccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC------cEEEEeccCCCCeEEEEEcCCC
Q 004015 207 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 207 ~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~------~~v~~f~aHt~~IsaLaFSPdG 280 (779)
.. +...+.|+...++.+..-.+ .| .-++.+...|...+|++-+. .++..|++|.+-|....||||+
T Consensus 156 ~~---c~~~liPe~~~~i~sl~v~~--dg---sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 156 NS---CTHELIPEDDTSIQSLTVMP--DG---SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred Cc---cccccCCCCCcceeeEEEcC--CC---cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence 22 22356777766665432111 11 12455677899999998764 4778899999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
++|||+|.|.+ ++||++... ...-..+ .|+ ...+++++||.||+||++++.|+++|+|++....
T Consensus 228 k~lat~ssdkt-v~iwn~~~~-------------~kle~~l-~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 228 KYLATCSSDKT-VKIWNTDDF-------------FKLELVL-TGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred cEEEeecCCce-EEEEecCCc-------------eeeEEEe-ecC-CceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 99999999987 899998753 1111222 222 2359999999999999999999999999999887
Q ss_pred CceeeccCCC
Q 004015 361 GSVNFQPTDA 370 (779)
Q Consensus 361 g~~~~~~H~~ 370 (779)
......+|..
T Consensus 292 ~v~qy~gh~K 301 (311)
T KOG0315|consen 292 EVRQYQGHHK 301 (311)
T ss_pred eeeecCCccc
Confidence 7777788843
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=9.6e-20 Score=194.67 Aligned_cols=254 Identities=16% Similarity=0.251 Sum_probs=173.8
Q ss_pred CCEEEEEECCCCcEEE-EEe-CCCCEEEEEEc-------CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCC
Q 004015 63 PTVVHFYSLRSQSYVH-MLK-FRSPIYSVRCS-------SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGG 132 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~-tLk-f~s~V~sV~~s-------~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~ 132 (779)
.++|+|||.++|+++- .|+ ++-.|.+++|. .++||. +-|+.|+|||+.-+++++++.+|.++..|
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTC----- 252 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTC----- 252 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEE-----
Confidence 4789999999988764 454 36789999993 345665 67999999999999999999999765443
Q ss_pred ccccccceeecC-ceeEeeCCC--ceecC--CCccCCcccccccccccccCCCcceeeeecccccchhceeee-cC----
Q 004015 133 IGIGYGPLAVGP-RWLAYSGSP--VVVSN--DGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN-LG---- 202 (779)
Q Consensus 133 ~~~~~~piAlgp-RwLAyas~~--~i~~~--sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~-lG---- 202 (779)
+-.|. .||+.++.+ +.+|. .|.+ +..|. ..+..|.+.|....-.|-.|... .|
T Consensus 253 -------vrwGG~gliySgS~DrtIkvw~a~dG~~-~r~lk---------GHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 253 -------VRWGGEGLIYSGSQDRTIKVWRALDGKL-CRELK---------GHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred -------EEEcCCceEEecCCCceEEEEEccchhH-HHhhc---------ccchheeeeeccchhhhhccccccccccCC
Confidence 44454 344433332 34452 2322 11222 13333444333322222222110 01
Q ss_pred ---CccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcC
Q 004015 203 ---DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDP 278 (779)
Q Consensus 203 ---d~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~-s~~~v~~f~aHt~~IsaLaFSP 278 (779)
|...+.+.+|-..+ ++ .| -.+++++.|+++.+|+-. +.+++..+.+|..-|+.+.|||
T Consensus 316 ~~se~~~~Al~rY~~~~-~~--------------~~---erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVL-KD--------------SG---ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred ChHHHHHHHHHHHHHhh-cc--------------Cc---ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 11112233332110 00 01 135678899999999965 5669999999999999999999
Q ss_pred CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 279 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 279 dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
||+++|+||.|.. |++||-.++ +.+-.| ||+. +.|+.|+||.|++.|+++|.|.|++||++.+
T Consensus 378 d~r~IASaSFDkS-VkLW~g~tG--------------k~lasf-RGHv-~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 378 DGRYIASASFDKS-VKLWDGRTG--------------KFLASF-RGHV-AAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred CccEEEEeecccc-eeeeeCCCc--------------chhhhh-hhcc-ceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 9999999999975 999999887 445555 7765 4599999999999999999999999999999
Q ss_pred CCCceeeccCCCCCC
Q 004015 359 LGGSVNFQPTDANFT 373 (779)
Q Consensus 359 ~gg~~~~~~H~~~~~ 373 (779)
..-...+-+|.+.+-
T Consensus 441 kKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVF 455 (480)
T ss_pred eeecccCCCCCceEE
Confidence 877777788987765
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.80 E-value=2.3e-18 Score=197.45 Aligned_cols=200 Identities=21% Similarity=0.338 Sum_probs=139.2
Q ss_pred CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecCc--eeEeeCCCcee
Q 004015 82 FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPR--WLAYSGSPVVV 156 (779)
Q Consensus 82 f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpR--wLAyas~~~i~ 156 (779)
+.++|+.++|+ +++|+. +.|.+|++|.+.|..++-...+|-.|. ..+.++|| |+|.++.+
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PV------------wdV~F~P~GyYFatas~D--- 514 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPV------------WDVQFAPRGYYFATASHD--- 514 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcce------------eeEEecCCceEEEecCCC---
Confidence 46899999996 555554 677999999999999998888874322 22444453 45554322
Q ss_pred cCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCCCc
Q 004015 157 SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGT 236 (779)
Q Consensus 157 ~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~ 236 (779)
.+.+-|+.+-.+-+-.=.-+++|...- ..-|+
T Consensus 515 ------------------------~tArLWs~d~~~PlRifaghlsDV~cv-------~FHPN----------------- 546 (707)
T KOG0263|consen 515 ------------------------QTARLWSTDHNKPLRIFAGHLSDVDCV-------SFHPN----------------- 546 (707)
T ss_pred ------------------------ceeeeeecccCCchhhhcccccccceE-------EECCc-----------------
Confidence 222222222211111000112222200 00011
Q ss_pred cCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 237 VNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 237 v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
...+++++.|.+|++||+.++..++.|.+|+++|.+|+|||+|++||+|+.||. |+|||+..+ .
T Consensus 547 -s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~--------------~ 610 (707)
T KOG0263|consen 547 -SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLANG--------------S 610 (707)
T ss_pred -ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCCC--------------c
Confidence 013456778999999999999999999999999999999999999999999997 999999875 2
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.+..+ +|+ ...|.+|.||.||..||+|+.|.+|++||+....+.
T Consensus 611 ~v~~l-~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 LVKQL-KGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred chhhh-hcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 22333 565 456999999999999999999999999999765443
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=5.2e-19 Score=189.09 Aligned_cols=233 Identities=18% Similarity=0.214 Sum_probs=162.7
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEE-EEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE-YAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l-~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..||||||+.|...+++.+. +..|..|+++ ++.||. +.+++|.+||..+++++ ..|.+|.... +++.+
T Consensus 136 D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~I-------t~Law 208 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWI-------TALAW 208 (480)
T ss_pred CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccce-------eEEee
Confidence 48999999999999999985 7899999997 566765 78999999999998754 5566664322 12444
Q ss_pred cceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 138 GPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 138 ~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
-|+-+.| |.||.++.+ +.+|+.- ..+.+ +...|++.
T Consensus 209 ep~hl~p~~r~las~skDg~vrIWd~~-----------------------------~~~~~---~~lsgHT~-------- 248 (480)
T KOG0271|consen 209 EPLHLVPPCRRLASSSKDGSVRIWDTK-----------------------------LGTCV---RTLSGHTA-------- 248 (480)
T ss_pred cccccCCCccceecccCCCCEEEEEcc-----------------------------CceEE---EEeccCcc--------
Confidence 5554444 566655432 2233210 00000 00011110
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc-----------CCCCE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD-----------PSGIL 282 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFS-----------PdG~l 282 (779)
++.....+. -+.+++++.|++|++|+...+.++..|++|..-|+.|+.| |.|..
T Consensus 249 ---------~VTCvrwGG------~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 249 ---------SVTCVRWGG------EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred ---------ceEEEEEcC------CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence 011111111 1345788999999999999999999999999999998866 55555
Q ss_pred -------------------------EEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 283 -------------------------LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 283 -------------------------LATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
|++||+|.+ +.+|+-... .+.+.++ .| +.+.|..+.|||
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t-lflW~p~~~-------------kkpi~rm-tg-Hq~lVn~V~fSP 377 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT-LFLWNPFKS-------------KKPITRM-TG-HQALVNHVSFSP 377 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCce-EEEeccccc-------------ccchhhh-hc-hhhheeeEEECC
Confidence 999999988 789985432 1222222 23 245599999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 338 DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
|++|||++|-|..|++|+-.++.-..+|++|-..+.
T Consensus 378 d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY 413 (480)
T ss_pred CccEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence 999999999999999999999988899999954443
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.6e-18 Score=187.32 Aligned_cols=229 Identities=14% Similarity=0.195 Sum_probs=164.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc----C-cEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----S-RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s----~-rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
+.+++|+..+.+.+++|+. .+.|.++.|. . .+...+.|+.|++|++.+-+.+..|.+|... +
T Consensus 197 G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R------------V 264 (459)
T KOG0272|consen 197 GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR------------V 264 (459)
T ss_pred CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh------------h
Confidence 6799999999999999985 7899999995 2 3444589999999999999999999888532 2
Q ss_pred cceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 138 GPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 138 ~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
..+++.| ++|+.++. ..+..-|-....+++. .--|+. +.+. .
T Consensus 265 s~VafHPsG~~L~Tasf---------------------------D~tWRlWD~~tk~ElL---~QEGHs--~~v~--~-- 308 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTASF---------------------------DSTWRLWDLETKSELL---LQEGHS--KGVF--S-- 308 (459)
T ss_pred eeeeecCCCceeeeccc---------------------------ccchhhcccccchhhH---hhcccc--cccc--e--
Confidence 2344433 66666542 2222222222211111 000100 0000 0
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
.+ ....|. .++++..|..-+|||+++++++..|.+|..+|..|+|||+|..|||||.|++ ++|
T Consensus 309 ----------ia---f~~DGS---L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kV 371 (459)
T KOG0272|consen 309 ----------IA---FQPDGS---LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKV 371 (459)
T ss_pred ----------eE---ecCCCc---eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEE
Confidence 00 001111 2345667778899999999999999999999999999999999999999987 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
||++.- ..+|.+. +++ .-|..|+|+| .|++|+++|.|+|++||.-......-++.+|.+.+.
T Consensus 372 WDLR~r--------------~~ly~ip-AH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 372 WDLRMR--------------SELYTIP-AHS-NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred eeeccc--------------ccceecc-ccc-chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 999864 3366653 332 3489999999 889999999999999999999888889999987654
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.79 E-value=8.9e-18 Score=175.05 Aligned_cols=235 Identities=14% Similarity=0.151 Sum_probs=168.0
Q ss_pred CCCEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CcEEEE-EeCCeEEEEeCCCC------cEEEEEecCCcccCCCCCC
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAI-CQAAQVHCFDAATL------EIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~-s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~------e~l~tl~t~p~~~~~p~s~ 131 (779)
+.+.+.|||.-|...+|-|..+ +.|..++|+ +.+||. ++++...||++.+. +..+.|.+|..-..|
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc---- 150 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC---- 150 (343)
T ss_pred cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEE----
Confidence 4578999999999999999996 579999994 788987 78999999999976 234455555321101
Q ss_pred CccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 132 ~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
. |||- +..++ + +|...+.+.|-.+.++++..=.-+.||...
T Consensus 151 --------C----~f~d--D~~il------------T--------~SGD~TCalWDie~g~~~~~f~GH~gDV~s----- 191 (343)
T KOG0286|consen 151 --------C----RFLD--DNHIL------------T--------GSGDMTCALWDIETGQQTQVFHGHTGDVMS----- 191 (343)
T ss_pred --------E----EEcC--CCceE------------e--------cCCCceEEEEEcccceEEEEecCCcccEEE-----
Confidence 0 2221 11111 1 123455666666665543211112222210
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt 291 (779)
-++.|. . ..+|+++.-|+..+|||++.+.++++|.+|...|++|+|-|+|.-+||||+|++
T Consensus 192 --lsl~p~----------~-------~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 192 --LSLSPS----------D-------GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred --EecCCC----------C-------CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce
Confidence 111121 0 125778888999999999999999999999999999999999999999999998
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
.++||++.. +.+..+..-.....|.+++||..|++|.+|..|.+++|||.-.....-.+.+|.+.
T Consensus 253 -cRlyDlRaD--------------~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 253 -CRLYDLRAD--------------QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred -eEEEeecCC--------------cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 899999975 22222222222345999999999999999999999999999888777788999887
Q ss_pred CC
Q 004015 372 FT 373 (779)
Q Consensus 372 ~~ 373 (779)
++
T Consensus 318 vS 319 (343)
T KOG0286|consen 318 VS 319 (343)
T ss_pred eE
Confidence 76
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.2e-17 Score=190.20 Aligned_cols=196 Identities=19% Similarity=0.294 Sum_probs=147.1
Q ss_pred cCCCCCCCc---CCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcE-EEEEeCCeEEEEeCCCCcEEEEEecCCccc
Q 004015 53 YHDLGNGSS---VPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRV-VAICQAAQVHCFDAATLEIEYAILTNPIVM 125 (779)
Q Consensus 53 ~~~~~~~~~---~~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rl-LaVs~d~~I~IwD~~T~e~l~tl~t~p~~~ 125 (779)
|.++|+... ..++|||||..+|-|+.|+. +.+.|.+|.|. ++. |..++|++|++||+...++.+++.. |.+
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p- 435 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEP- 435 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCc-
Confidence 455555444 35889999999999999996 57889999995 454 4558999999999999999999843 332
Q ss_pred CCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc
Q 004015 126 GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 205 (779)
Q Consensus 126 ~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~ 205 (779)
+.+..+|+.| .|.+|.
T Consensus 436 ---------~QfscvavD~----------------------------------sGelV~--------------------- 451 (893)
T KOG0291|consen 436 ---------IQFSCVAVDP----------------------------------SGELVC--------------------- 451 (893)
T ss_pred ---------eeeeEEEEcC----------------------------------CCCEEE---------------------
Confidence 1223333211 112110
Q ss_pred ccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEE
Q 004015 206 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVT 285 (779)
Q Consensus 206 ~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLAT 285 (779)
+.+...-.|.||++++++.+..+.+|.+||.+|+|+|+|.+||+
T Consensus 452 ------------------------------------AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 452 ------------------------------------AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ------------------------------------eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 01112236999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 286 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 286 aS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+|.|.| ||+||+... .++++.+ .+ ...+..++|+|||+-||+++.||-|.+||+.......++
T Consensus 496 ~SWDkT-VRiW~if~s----------~~~vEtl-~i-----~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 496 GSWDKT-VRIWDIFSS----------SGTVETL-EI-----RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred ccccce-EEEEEeecc----------CceeeeE-ee-----ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 999987 999999763 1122222 21 235899999999999999999999999999887655555
Q ss_pred cc
Q 004015 366 QP 367 (779)
Q Consensus 366 ~~ 367 (779)
.+
T Consensus 559 dg 560 (893)
T KOG0291|consen 559 DG 560 (893)
T ss_pred cc
Confidence 44
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.75 E-value=1e-16 Score=177.09 Aligned_cols=288 Identities=12% Similarity=0.187 Sum_probs=175.3
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEE-----cCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRC-----SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~-----s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
...++||||..+.++++++.+.+.|.+... +.++|.|++.+.|-.|++.....++++.+|...
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~------------ 322 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS------------ 322 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc------------
Confidence 358999999999999999999766543333 588899999999999999999999999888432
Q ss_pred ccceeecC--ceeEeeCCC--ceecCCCccCCccccccc----ccccc-cCCCcc--------eeeeec---ccccch--
Q 004015 137 YGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSR----SFSGF-ASNGSR--------VAHYAK---ESSKHL-- 194 (779)
Q Consensus 137 ~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~----~~s~~-~s~g~~--------va~~A~---~~sK~L-- 194 (779)
+..+++++ .+|-.++.+ +..|+.|......+.+.. ...-- .+.+.+ +..... ..+++-
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~ 402 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVV 402 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccccee
Confidence 23455555 444444433 334554432222221100 00000 000111 100000 000000
Q ss_pred --h---ceeeecCCcccccccccccc--ccCC---------CcCccccc-cCCCCCCCccCCcccccCCCCeEEEEECCC
Q 004015 195 --A---AGIVNLGDLGYKKLSQYCSE--FLPD---------SQNSLQSA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVS 257 (779)
Q Consensus 195 --a---~Gl~~lGd~~~~~ls~y~~~--l~p~---------~~~si~sa-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s 257 (779)
. .|+....+..+-.++-+ .+ ++.+ +..+...+ +++ ...++-+..||.|+||.+..
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~-~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-------~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACI-SDIVLLQDQTKVSSIPIGYESSAVAVSPD-------GSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEec-CcEEEEecCCcceeeccccccceEEEcCC-------CCEEEEecccceEEEEEecC
Confidence 0 01111111000000000 00 0000 00000011 111 12445677899999999987
Q ss_pred Cc--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEE
Q 004015 258 KN--VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF 335 (779)
Q Consensus 258 ~~--~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaF 335 (779)
.. ....+..|..+|++|+|||||++||.++..+. +.+||+... ....-+.+++.++|.+++|
T Consensus 475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv~yd~~s~---------------~~~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 475 DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VVLYDVASR---------------EVKTNRWAFHTAKINCVAW 538 (603)
T ss_pred CcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EEEEEcccC---------------ceecceeeeeeeeEEEEEe
Confidence 65 34456799999999999999999999999987 899999874 1123345666789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCCCceeec-cCCCCCCccCCCcCCcceecCCCCCCCCCCCCcccc
Q 004015 336 SDDSNWIMISSSRGTSHLFAINPLGGSVNFQ-PTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCA 402 (779)
Q Consensus 336 SpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~-~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~~l~~ 402 (779)
||++++||+||.|.+|+||.+......+.++ .| +.. ...+.|+++.++..
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH----------------~~g-Vn~v~wlde~tvvS 589 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH----------------LGG-VNSVAWLDESTVVS 589 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhheEecccc----------------ccC-ceeEEEecCceEEe
Confidence 9999999999999999999999987776664 45 333 45677888877743
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.75 E-value=6.1e-17 Score=184.50 Aligned_cols=192 Identities=19% Similarity=0.321 Sum_probs=150.6
Q ss_pred CCCEEEEEECCCCc--EEEEE-eCCCCEEEEEEc--CcEEE-EEeCCeEEEEeC-CCCcEEEEEecCCcccCCCCCCCcc
Q 004015 62 VPTVVHFYSLRSQS--YVHML-KFRSPIYSVRCS--SRVVA-ICQAAQVHCFDA-ATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 62 ~~~tVrIWDL~Tge--~V~tL-kf~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~-~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
....+++|++.+++ ..+++ .+...|.+++|+ +++++ .+.|.+|+|||+ ..+.+++++.+|+....
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-------- 250 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-------- 250 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE--------
Confidence 35789999998777 66666 356789999995 55555 478899999999 56689999998854211
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
. ++|. | .|.
T Consensus 251 ----~-------~~f~-------------p--------------~g~--------------------------------- 259 (456)
T KOG0266|consen 251 ----S-------VAFS-------------P--------------DGN--------------------------------- 259 (456)
T ss_pred ----E-------EEec-------------C--------------CCC---------------------------------
Confidence 1 1222 1 111
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
.+++++.|++|+|||+.+++++..|++|.++|++++|+++|.+|+++|.||. |+
T Consensus 260 -------------------------~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i~ 313 (456)
T KOG0266|consen 260 -------------------------LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-IR 313 (456)
T ss_pred -------------------------EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-EE
Confidence 1234578899999999999999999999999999999999999999999987 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc-cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a-~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
|||+..+ ...++..+. +.... .+.+++|||+++||++++.|+++++|++........+.+|...
T Consensus 314 vwd~~~~------------~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 314 VWDLETG------------SKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred EEECCCC------------ceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence 9999876 111223343 33333 6899999999999999999999999999998888888888654
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=6.2e-18 Score=182.85 Aligned_cols=183 Identities=21% Similarity=0.255 Sum_probs=145.4
Q ss_pred CcCCCCCCCc---CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcc
Q 004015 52 NYHDLGNGSS---VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIV 124 (779)
Q Consensus 52 ~~~~~~~~~~---~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~ 124 (779)
.||+.|.-.. ...+-++||+.|++.+..... ...|++|+|. +.+++. ++|..=+|||++|++++..|.+|..+
T Consensus 268 afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~ 347 (459)
T KOG0272|consen 268 AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE 347 (459)
T ss_pred eecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccc
Confidence 3566664433 357899999999998887765 5689999995 677776 68888899999999999999887432
Q ss_pred cCCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCc
Q 004015 125 MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDL 204 (779)
Q Consensus 125 ~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~ 204 (779)
. ++ ++|+ | +|.
T Consensus 348 I--------------~~-----V~fs------------------------P---NGy----------------------- 358 (459)
T KOG0272|consen 348 I--------------LS-----VAFS------------------------P---NGY----------------------- 358 (459)
T ss_pred e--------------ee-----EeEC------------------------C---Cce-----------------------
Confidence 1 00 1111 1 111
Q ss_pred cccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEE
Q 004015 205 GYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILL 283 (779)
Q Consensus 205 ~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lL 283 (779)
++++++.|++++|||++..+.+.++.||++-|+.|+|+| .|.+|
T Consensus 359 -----------------------------------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 359 -----------------------------------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred -----------------------------------EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence 345567899999999999999999999999999999999 79999
Q ss_pred EEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 284 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 284 ATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+|||.|.+ ++||...+. ..+..| -|+. .+|.+++.|+||+++++++-|+|+++|.
T Consensus 404 ~TasyD~t-~kiWs~~~~--------------~~~ksL-aGHe-~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNT-VKIWSTRTW--------------SPLKSL-AGHE-GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcc-eeeecCCCc--------------ccchhh-cCCc-cceEEEEeccCCceEEEeccCceeeecc
Confidence 99999987 899987765 334455 4544 4699999999999999999999999995
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.74 E-value=6.9e-17 Score=176.65 Aligned_cols=197 Identities=17% Similarity=0.298 Sum_probs=142.9
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--c-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--R-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~--r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+.++||+. +|..+.+|.+ +.||.+|++|+ . +|+.+.|+++.+||..+++..+++.-|..+
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------- 320 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------- 320 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--------------
Confidence 478999997 5777888875 89999999983 3 555688999999999999988888655211
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
++.-.|.-.
T Consensus 321 --~lDVdW~~~--------------------------------------------------------------------- 329 (524)
T KOG0273|consen 321 --ALDVDWQSN--------------------------------------------------------------------- 329 (524)
T ss_pred --ccceEEecC---------------------------------------------------------------------
Confidence 110011100
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
..|+....+|.|+|+-+...+++.+|.+|.++|++|+|+|.|.+|+|||.|+| ++||..
T Consensus 330 --------------------~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~ 388 (524)
T KOG0273|consen 330 --------------------DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSM 388 (524)
T ss_pred --------------------ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeec
Confidence 12334456899999999999999999999999999999999999999999998 899985
Q ss_pred CCCCC---------------CCC-------------CccCCCCceeEEEEeecCC-------CcccEEEEEEcCCCCEEE
Q 004015 299 IPGIL---------------GTS-------------SACDAGTSYVHLYRLQRGL-------TNAVIQDISFSDDSNWIM 343 (779)
Q Consensus 299 ~~~~~---------------g~~-------------s~~~~~~s~~~l~~l~rG~-------t~a~I~sIaFSpDg~~LA 343 (779)
...-. |+. -+.-...+...+|...+|. +..+|++++|||+|+|+|
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence 43200 000 0000011223344444432 234599999999999999
Q ss_pred EEeCCCeEEEEecCCCCCceeec
Q 004015 344 ISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 344 tgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
+|+.||.||||++..+.-.-+.+
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred ecCCCCeeEeccccchheeEeec
Confidence 99999999999998864433333
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.71 E-value=6.6e-16 Score=160.44 Aligned_cols=223 Identities=15% Similarity=0.204 Sum_probs=153.2
Q ss_pred CCEEEEEECCC-----CcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRS-----QSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~T-----ge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
..++.+|+|.+ |..++.++. ...|.++.++ ...|.++.|+++++||+.+++..+.|.+|.....
T Consensus 37 Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl------- 109 (315)
T KOG0279|consen 37 DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL------- 109 (315)
T ss_pred ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-------
Confidence 47899998754 666777776 5678899995 3456778999999999999999999988854221
Q ss_pred cccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc-ccccc
Q 004015 134 GIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG-YKKLS 210 (779)
Q Consensus 134 ~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~-~~~ls 210 (779)
.+|+++ |.+..++. .+++..|- .+....+.+++.+ ..=++
T Consensus 110 -----sva~s~dn~qivSGSr---------------------------DkTiklwn-----t~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 110 -----SVAFSTDNRQIVSGSR---------------------------DKTIKLWN-----TLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred -----EEEecCCCceeecCCC---------------------------cceeeeee-----ecccEEEEEecCCCcCcEE
Confidence 133332 22222221 12221111 0111111222211 10011
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG 290 (779)
-. ...|+.. +..++++..|++|+|||+++.+....|.+|++.+++++|||||.++++|+.||
T Consensus 153 cv--rfsP~~~----------------~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 153 CV--RFSPNES----------------NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred EE--EEcCCCC----------------CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 00 0112210 12456788999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
. +.+||+..+ +++|.+.-. ..|.++||+|.--||+.+...+ |+||++.+......++
T Consensus 215 ~-~~LwdL~~~--------------k~lysl~a~---~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 215 E-AMLWDLNEG--------------KNLYSLEAF---DIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELK 271 (315)
T ss_pred e-EEEEEccCC--------------ceeEeccCC---CeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhcc
Confidence 8 899999876 678888532 3599999999998888776554 9999999876655554
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.71 E-value=9.7e-16 Score=159.99 Aligned_cols=208 Identities=18% Similarity=0.252 Sum_probs=142.9
Q ss_pred EEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecC--ceeEeeC
Q 004015 78 HMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSG 151 (779)
Q Consensus 78 ~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAyas 151 (779)
++|+. -..|+++.|+ +++|..++|+++.|||.-|..+.+.+.--.. ..-..|.+| .++|.++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~------------WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS------------WVMTCAYSPSGNFVACGG 116 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce------------eEEEEEECCCCCeEEecC
Confidence 66764 5789999995 5667779999999999999888877732110 111123333 4555543
Q ss_pred CCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCC
Q 004015 152 SPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGG 231 (779)
Q Consensus 152 ~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~ 231 (779)
-+-+ ...|+-...+.+..+ ..+|+| .|+.+|-.-.+|+.
T Consensus 117 LdN~--------------Csiy~ls~~d~~g~~----~v~r~l------~gHtgylScC~f~d----------------- 155 (343)
T KOG0286|consen 117 LDNK--------------CSIYPLSTRDAEGNV----RVSREL------AGHTGYLSCCRFLD----------------- 155 (343)
T ss_pred cCce--------------eEEEecccccccccc----eeeeee------cCccceeEEEEEcC-----------------
Confidence 2100 000110000111110 112222 25555443333332
Q ss_pred CCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 232 KSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 232 ~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
.+++++++.|.+..+||+.+++.+..|.+|++.|.+|.++| +++.++||+.|++ .+|||++.+
T Consensus 156 ------D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~-aklWD~R~~--------- 219 (343)
T KOG0286|consen 156 ------DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS-AKLWDVRSG--------- 219 (343)
T ss_pred ------CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc-eeeeeccCc---------
Confidence 13567788999999999999999999999999999999999 9999999999988 799999975
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.+...| .|+ ...|.+|+|-|+|.-||+||+|+|+++|||.....
T Consensus 220 -----~c~qtF-~gh-esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 220 -----QCVQTF-EGH-ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred -----ceeEee-ccc-ccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 344555 344 34699999999999999999999999999976533
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=2.7e-16 Score=167.78 Aligned_cols=225 Identities=16% Similarity=0.324 Sum_probs=155.9
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEEE-eCCeEEEEeCCC-CcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAIC-QAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+|++||+.||++..+|+. ...|.+|+|. ++++|.+ .|-.|.+||..+ ++|+..+.+|... ..
T Consensus 130 ~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~------------vS 197 (406)
T KOG0295|consen 130 ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG------------VS 197 (406)
T ss_pred ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc------------ee
Confidence 6799999999999999986 5569999995 7888875 445599999997 6788877776421 11
Q ss_pred ceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.+++=| .+++..+++ .++ .+++. + +.||-..
T Consensus 198 ~V~f~P~gd~ilS~srD---------------------------~ti--k~We~------------~------tg~cv~t 230 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRD---------------------------NTI--KAWEC------------D------TGYCVKT 230 (406)
T ss_pred eEEEEecCCeeeecccc---------------------------cce--eEEec------------c------cceeEEe
Confidence 222111 233332221 111 11111 0 1122111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC---------------CC
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS---------------GI 281 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd---------------G~ 281 (779)
++....-....- ....|. .+++.+.+.+|++|-+.++.+.+.|+.|..+|-|++|-|. |.
T Consensus 231 ~~~h~ewvr~v~--v~~DGt---i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~ 305 (406)
T KOG0295|consen 231 FPGHSEWVRMVR--VNQDGT---IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQ 305 (406)
T ss_pred ccCchHhEEEEE--ecCCee---EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCcc
Confidence 111110000000 001122 2456678899999999999999999999999999998764 35
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 282 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 282 lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
+|+++|.|++ |++||+.++ .+|++|. |+. ..|.+++|+|-|+||++..+|+|++|||++...+
T Consensus 306 ~l~s~SrDkt-Ik~wdv~tg--------------~cL~tL~-ghd-nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 306 VLGSGSRDKT-IKIWDVSTG--------------MCLFTLV-GHD-NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred EEEeecccce-EEEEeccCC--------------eEEEEEe-ccc-ceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 9999999987 999999986 6788883 543 4599999999999999999999999999999988
Q ss_pred ceeeccCC
Q 004015 362 SVNFQPTD 369 (779)
Q Consensus 362 ~~~~~~H~ 369 (779)
..++..|.
T Consensus 369 mk~~~ah~ 376 (406)
T KOG0295|consen 369 MKTLEAHE 376 (406)
T ss_pred eeccCCCc
Confidence 88887763
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=3.3e-16 Score=178.46 Aligned_cols=271 Identities=18% Similarity=0.191 Sum_probs=172.2
Q ss_pred CEEEEEECCCCcEEEEEeCC-C-CEEEE---EEcCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR-S-PIYSV---RCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~-s-~V~sV---~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
+.+++||.++++++...+-+ + .+..+ .-++++++++.+.+|.+||..+++....+-++.... +.
T Consensus 260 g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI-----------~D 328 (775)
T KOG0319|consen 260 GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI-----------LD 328 (775)
T ss_pred ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh-----------ee
Confidence 67999999999998876653 1 13222 225889999999999999999999998887764321 11
Q ss_pred ceeecC--ceeEeeCCCc--eecCCCccCCcccccc-ccccc--ccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 139 PLAVGP--RWLAYSGSPV--VVSNDGRVNPQHLMQS-RSFSG--FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 139 piAlgp--RwLAyas~~~--i~~~sgrvspq~ls~s-~~~s~--~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
.--+|| ++||.+.+.. ...+.....++-+.+. ..+-. ..+.|.++++.++|.+- -++.+.+...+. .
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~sv----ilWr~~~~~~~~-~- 402 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSV----ILWRLNNNCSKS-L- 402 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceE----EEEEecCCcchh-h-
Confidence 234566 7888887742 2222211222211111 01111 12344556555555332 122221111000 0
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-----EE----EEeccCCCCeEEEEEcCCCCE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-----VI----AQFRAHKSPISALCFDPSGIL 282 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~-----~v----~~f~aHt~~IsaLaFSPdG~l 282 (779)
|....-...+++..... .+ .+ ...|++.++|+++++|++...+ .+ .+..+|...|+|++.+|+.++
T Consensus 403 -~~a~~~gH~~svgava~-~~-~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 403 -CVAQANGHTNSVGAVAG-SK-LG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred -hhhhhcccccccceeee-cc-cC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 00000000011111100 00 01 1246788999999999998621 12 234599999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 283 LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 283 LATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
+||||.|.+ .+||++... .++..| +|++. .|+|+.|||..+.+||+|.|+||+||.|.++.+.
T Consensus 478 iAT~SqDkt-aKiW~le~~--------------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl 540 (775)
T KOG0319|consen 478 IATGSQDKT-AKIWDLEQL--------------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL 540 (775)
T ss_pred EEecccccc-eeeecccCc--------------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceee
Confidence 999999987 899999853 455555 56553 3999999999999999999999999999999999
Q ss_pred eeeccCCCCCC
Q 004015 363 VNFQPTDANFT 373 (779)
Q Consensus 363 ~~~~~H~~~~~ 373 (779)
-+|.+|+..+-
T Consensus 541 kT~eGH~~aVl 551 (775)
T KOG0319|consen 541 KTFEGHTSAVL 551 (775)
T ss_pred eeecCccceeE
Confidence 99999965443
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.67 E-value=1.6e-14 Score=144.74 Aligned_cols=171 Identities=18% Similarity=0.349 Sum_probs=131.6
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEEEe-CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaVs~-d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|++||+.+++.+..+. +...|.+++++ +++++++. ++.|++||+.+.+.+..+..+... ..
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~------------i~- 181 (289)
T cd00200 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE------------VN- 181 (289)
T ss_pred CeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccc------------cc-
Confidence 679999999999998887 46789999996 47777766 999999999988877777543210 00
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+++.. ++.
T Consensus 182 ------~~~~~~---------------------------~~~-------------------------------------- 190 (289)
T cd00200 182 ------SVAFSP---------------------------DGE-------------------------------------- 190 (289)
T ss_pred ------eEEECC---------------------------CcC--------------------------------------
Confidence 111210 010
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.+..+|.|++||+.+++.+..+..|..+|.+++|+|++.++++++.+|+ |++|++.
T Consensus 191 --------------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~ 249 (289)
T cd00200 191 --------------------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLR 249 (289)
T ss_pred --------------------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcC
Confidence 0112233789999999999999999999999999999999999999998887 8999987
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
.+ ..+..+. + ....|.+++|+|++++|++++.||+++||+
T Consensus 250 ~~--------------~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TG--------------ECVQTLS-G-HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred Cc--------------eeEEEcc-c-cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 64 2333443 2 234599999999999999999999999996
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.66 E-value=7.9e-15 Score=167.23 Aligned_cols=188 Identities=19% Similarity=0.260 Sum_probs=145.0
Q ss_pred CCCEEEEEEC-CCCcEEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 62 VPTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 62 ~~~tVrIWDL-~Tge~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
...+|||||+ ..+.++++|+. ...|++++|+ +++|+ ++.|++|+|||+.+++++.++.+|...
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~------------ 290 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG------------ 290 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc------------
Confidence 4689999999 55689999974 7889999996 45555 578999999999999999999887431
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+. -+++.. +|.
T Consensus 291 ---is----~~~f~~---------------------------d~~----------------------------------- 301 (456)
T KOG0266|consen 291 ---IS----GLAFSP---------------------------DGN----------------------------------- 301 (456)
T ss_pred ---eE----EEEECC---------------------------CCC-----------------------------------
Confidence 11 112210 111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCC--eEEEEEcCCCCEEEEEeCCCCE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSP--ISALCFDPSGILLVTASVQGHN 292 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~--~v~~f~aHt~~--IsaLaFSPdG~lLATaS~DGt~ 292 (779)
.++.++.||.|+|||+.++. ++..+..+..+ +++++|+|+|++|+++..|++
T Consensus 302 -----------------------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~- 357 (456)
T KOG0266|consen 302 -----------------------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT- 357 (456)
T ss_pred -----------------------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-
Confidence 12234568999999999999 67888888766 999999999999999999987
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc--cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a--~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+++||+..+ .....+ +++... .+.+..++++++|+.+|+.|++|++|++.+......+.+|.
T Consensus 358 ~~~w~l~~~------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 358 LKLWDLRSG------------KSVGTY---TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS 421 (456)
T ss_pred EEEEEccCC------------cceeee---cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC
Confidence 899999865 111222 333332 36677789999999999999999999999977777888883
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.65 E-value=4.9e-14 Score=141.23 Aligned_cols=186 Identities=18% Similarity=0.318 Sum_probs=139.4
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--cEEEEEe-CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~--rlLaVs~-d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+.|++||+.+++.+..+.. ...|..+.++. ++++++. ++.|++||+.+.+....+..+...
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------- 137 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-------------- 137 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc--------------
Confidence 47899999999888888875 55899999963 7787776 999999999988887777543210
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+ ..+++.. ++.
T Consensus 138 -i----~~~~~~~---------------------------~~~------------------------------------- 148 (289)
T cd00200 138 -V----NSVAFSP---------------------------DGT------------------------------------- 148 (289)
T ss_pred -E----EEEEEcC---------------------------cCC-------------------------------------
Confidence 1 0112210 000
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
.++.+..+|.|++||+.+++.+..+..|...|.+++|+|+|+.|++++.+|. |++||+
T Consensus 149 ---------------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~ 206 (289)
T cd00200 149 ---------------------FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDL 206 (289)
T ss_pred ---------------------EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEEC
Confidence 0112234789999999999999999999999999999999999999999987 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
..+ ..+..+. + ....|.+++|+|++.++++++.||++++|++........+..|.
T Consensus 207 ~~~--------------~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 207 STG--------------KCLGTLR-G-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred CCC--------------ceecchh-h-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 764 1222221 2 12359999999999999999989999999998765555555553
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.8e-15 Score=168.19 Aligned_cols=223 Identities=16% Similarity=0.196 Sum_probs=155.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|.||+..|..+|+++.. ..||++.+|= ++.|++ +.|.+|+||+..|+++++++..|+.-. ..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyI------------R~ 102 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYI------------RS 102 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccce------------ee
Confidence 6699999999999999997 6899999993 455555 678899999999999999999986522 12
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+++-| -++-.+ |+.-++.-|-++-. -+.-...-|+.. |.-...
T Consensus 103 iavHPt~P~vLts---------------------------SDDm~iKlW~we~~--wa~~qtfeGH~H------yVMqv~ 147 (794)
T KOG0276|consen 103 IAVHPTLPYVLTS---------------------------SDDMTIKLWDWENE--WACEQTFEGHEH------YVMQVA 147 (794)
T ss_pred eeecCCCCeEEec---------------------------CCccEEEEeeccCc--eeeeeEEcCcce------EEEEEE
Confidence 44433 112122 22222222221110 000001112211 111110
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC--CEEEEEeCCCCEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG--ILLVTASVQGHNINI 295 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG--~lLATaS~DGt~I~V 295 (779)
.+|-. +.+|++++-|++|+||.+.+..+..+|++|...|+|+.|=+-| -+|+||++|-+ |+|
T Consensus 148 ---------fnPkD------~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKv 211 (794)
T KOG0276|consen 148 ---------FNPKD------PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKV 211 (794)
T ss_pred ---------ecCCC------ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEE
Confidence 01111 2257888899999999999999999999999999999999876 49999999955 999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
||..+. .++.+| .|+++ .|..++|.|.=.+|++||.|||++||.-.+|..+-++
T Consensus 212 WDyQtk--------------~CV~TL-eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 212 WDYQTK--------------SCVQTL-EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred eecchH--------------HHHHHh-hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 998864 344455 46543 4999999999999999999999999998887654433
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.64 E-value=9.7e-15 Score=153.04 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=164.6
Q ss_pred CcCCCCCCCc---CCCEEEEEEC-CCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCc
Q 004015 52 NYHDLGNGSS---VPTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPI 123 (779)
Q Consensus 52 ~~~~~~~~~~---~~~tVrIWDL-~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~ 123 (779)
.|+++|.+-. ..+.|.||+. ..-+-...++. .+.|..|.++ ..++.++.|++|+.||+.|+++++.+++|..
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~ 133 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS 133 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccc
Confidence 3555555544 3578999995 33444556664 7899999995 4567778999999999999999999998854
Q ss_pred ccCCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecc---cccchhceeee
Q 004015 124 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKE---SSKHLAAGIVN 200 (779)
Q Consensus 124 ~~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~---~sK~La~Gl~~ 200 (779)
+... +.|.-.|+..+..+ ++..++..|.+. +.|...
T Consensus 134 ~vNs---------~~p~rrg~~lv~Sg---------------------------sdD~t~kl~D~R~k~~~~t~~----- 172 (338)
T KOG0265|consen 134 FVNS---------LDPSRRGPQLVCSG---------------------------SDDGTLKLWDIRKKEAIKTFE----- 172 (338)
T ss_pred eeee---------cCccccCCeEEEec---------------------------CCCceEEEEeecccchhhccc-----
Confidence 3211 01222222223222 233333333221 212110
Q ss_pred cCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 004015 201 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 201 lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG 280 (779)
..| .+++.+. +. . ...+.++.-|+.|++||++.+..+.++++|..+|+.|..+|+|
T Consensus 173 ---~ky-qltAv~f----~d--------~--------s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 173 ---NKY-QLTAVGF----KD--------T--------SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG 228 (338)
T ss_pred ---cce-eEEEEEe----cc--------c--------ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC
Confidence 000 0010000 00 0 0112345567899999999999999999999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc--cEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a--~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.+|.+-+-|-+ +++||+++..+.. +++..+..+.++- ....++|||+++++..|+.|+.++|||...
T Consensus 229 s~llsnsMd~t-vrvwd~rp~~p~~----------R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 229 SFLLSNSMDNT-VRVWDVRPFAPSQ----------RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred Cccccccccce-EEEEEecccCCCC----------ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 99999999976 8999999873322 3344443332222 267899999999999999999999999998
Q ss_pred CCCceeeccCCCCCC
Q 004015 359 LGGSVNFQPTDANFT 373 (779)
Q Consensus 359 ~gg~~~~~~H~~~~~ 373 (779)
.+....+-+|...+.
T Consensus 298 r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 298 RRILYKLPGHYGSVN 312 (338)
T ss_pred ccEEEEcCCcceeEE
Confidence 888888888854443
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.63 E-value=3.2e-14 Score=156.01 Aligned_cols=223 Identities=17% Similarity=0.277 Sum_probs=155.1
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCE-EEEEE-c-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPI-YSVRC-S-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V-~sV~~-s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
..+++.+||..+|+....+.|.+.. .+|.| + ..++..+.++.|+||-+..-+.+.++.+|.++.. ++.++
T Consensus 296 vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~-------alk~n 368 (524)
T KOG0273|consen 296 VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN-------ALKWN 368 (524)
T ss_pred CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceE-------EEEEC
Confidence 3578999999999999999997666 88999 3 4455557889999999999999999998865322 13333
Q ss_pred ceeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 139 PLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
|. ...||.++.+ +.+|+.+.-...+ .+-+ -+|++ |....
T Consensus 369 ~t---g~LLaS~SdD~TlkiWs~~~~~~~~--------------~l~~-----Hskei-----------------~t~~w 409 (524)
T KOG0273|consen 369 PT---GSLLASCSDDGTLKIWSMGQSNSVH--------------DLQA-----HSKEI-----------------YTIKW 409 (524)
T ss_pred CC---CceEEEecCCCeeEeeecCCCcchh--------------hhhh-----hccce-----------------eeEee
Confidence 32 1356665543 4445322110000 0000 01111 11111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.|.+... .++ -.+..++....+++|++||+..+.++.+|..|+.||.+|+|||+|++||+|+.||. |+||
T Consensus 410 sp~g~v~---~n~------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iw 479 (524)
T KOG0273|consen 410 SPTGPVT---SNP------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIW 479 (524)
T ss_pred cCCCCcc---CCC------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEec
Confidence 1222110 000 11224567788999999999999999999999999999999999999999999996 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+++++ .+|+-.+|. ..|..++|+-+|.+|+++-+|+.+.|-|+.
T Consensus 480 s~~~~---------------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 480 STKTG---------------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cccch---------------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99875 344444553 349999999999999999999999998874
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=8.6e-15 Score=156.47 Aligned_cols=189 Identities=10% Similarity=0.177 Sum_probs=143.4
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
-.++|+.|++.+|.+++++.. +..|+.|+.+ +.++|. +.+.+|++|=+.+++|+..++.|..+.-|
T Consensus 213 rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc---------- 282 (406)
T KOG0295|consen 213 RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC---------- 282 (406)
T ss_pred cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE----------
Confidence 468999999999999999986 5689999997 567776 57889999999999999888887543222
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+ |++. ....++ .+ +. .
T Consensus 283 --i-------~wap-------------~~~~~~-i~-----------------------------~a------------t 298 (406)
T KOG0295|consen 283 --I-------AWAP-------------ESSYPS-IS-----------------------------EA------------T 298 (406)
T ss_pred --E-------Eecc-------------cccCcc-hh-----------------------------hc------------c
Confidence 2 2221 000000 00 00 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
++.++ + ..+.+++.|++|++||+.++.++.++.+|..-|..++|+|-|+||+++.+|++ ++|||
T Consensus 299 ~~~~~------------~---~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwd 362 (406)
T KOG0295|consen 299 GSTNG------------G---QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWD 362 (406)
T ss_pred CCCCC------------c---cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEE
Confidence 00000 0 02345678999999999999999999999999999999999999999999998 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+... +++.++. .+.+.|.+++|..+.-|+.+|+-|.+++||..
T Consensus 363 l~~~--------------~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 363 LKNL--------------QCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eccc--------------eeeeccC--CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9875 4555553 23345999999999999999999999999964
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.63 E-value=3.2e-15 Score=164.24 Aligned_cols=207 Identities=15% Similarity=0.217 Sum_probs=152.4
Q ss_pred CCCEEEEEECCC-CcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 62 VPTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 62 ~~~tVrIWDL~T-ge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
..+.|+||++.. +.+++++.. ..+|.+++|+ .++|.+++|..|++||+.|++++..+.+-..+.
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~----------- 303 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT----------- 303 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-----------
Confidence 358899999987 999999875 7799999997 578999999999999999999999987531100
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
++- + +|
T Consensus 304 --cvk-------f-------------~p---------------------------------------------------- 309 (503)
T KOG0282|consen 304 --CVK-------F-------------HP---------------------------------------------------- 309 (503)
T ss_pred --eee-------c-------------CC----------------------------------------------------
Confidence 000 0 01
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
++ ...|..+..++.|+.||+++++++..+..|-++|..+.|=++|+.++|+|+|++ ++||
T Consensus 310 --d~-----------------~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks-~riW 369 (503)
T KOG0282|consen 310 --DN-----------------QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS-VRIW 369 (503)
T ss_pred --CC-----------------CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc-EEEE
Confidence 10 002334567899999999999999999999999999999999999999999987 8999
Q ss_pred eCCCCCCC---------CC-----------CccCCCCceeEEEE------e-----ecCCCccc-EEEEEEcCCCCEEEE
Q 004015 297 KIIPGILG---------TS-----------SACDAGTSYVHLYR------L-----QRGLTNAV-IQDISFSDDSNWIMI 344 (779)
Q Consensus 297 di~~~~~g---------~~-----------s~~~~~~s~~~l~~------l-----~rG~t~a~-I~sIaFSpDg~~LAt 344 (779)
+.....+- +. -+++.......++. + ..|+..+- -..+.|||||++|++
T Consensus 370 e~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 370 ENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred EcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 97654220 00 01111122222221 1 12332222 347999999999999
Q ss_pred EeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 345 SSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 345 gS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
|+.||.+.+||.++....-.+++|+....
T Consensus 450 GdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 450 GDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred ecCCccEEEeechhhhhhhccccCCcceE
Confidence 99999999999999888888899854433
No 28
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-14 Score=149.03 Aligned_cols=184 Identities=17% Similarity=0.287 Sum_probs=135.2
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.+||..||.+.++|+-+.. ...|.+|+.+ ..+|..+.|++|++||+++.+|.--+.-.. .|
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---------------~p 144 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---------------RP 144 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---------------Cc
Confidence 4999999999999999985 6789999996 567888999999999999887765553211 12
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
++ ||. |+ |-.
T Consensus 145 i~------AfD-------------p~--------------GLi------------------------------------- 154 (311)
T KOG1446|consen 145 IA------AFD-------------PE--------------GLI------------------------------------- 154 (311)
T ss_pred ce------eEC-------------CC--------------CcE-------------------------------------
Confidence 32 443 11 000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC--cEEEEec---cCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFR---AHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~--~~v~~f~---aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
|+.+...+.|+|||+++. .+..+|. +-...++.|.|||||++|+.+...+. ++
T Consensus 155 ---------------------fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~ 212 (311)
T KOG1446|consen 155 ---------------------FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IY 212 (311)
T ss_pred ---------------------EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EE
Confidence 111223348999999863 5666665 44678999999999999988888775 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|.|...| ++.+.+..++....- -.+.+|+|||++|.+|+.||+||||+++++.....+++
T Consensus 213 ~lDAf~G------------~~~~tfs~~~~~~~~-~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 213 LLDAFDG------------TVKSTFSGYPNAGNL-PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEEccCC------------cEeeeEeeccCCCCc-ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9998876 344444444432222 25899999999999999999999999988766666666
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.61 E-value=7.8e-14 Score=169.00 Aligned_cols=214 Identities=14% Similarity=0.171 Sum_probs=140.6
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|+|||+.+++.+..++. ...|++|+|+ +.+|+ .+.|++|++||+.+++++.++..+...
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v------------- 620 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANI------------- 620 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCe-------------
Confidence 58899999999999998864 6789999996 34555 467899999999999998888653211
Q ss_pred cceee---cCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccc
Q 004015 138 GPLAV---GPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 212 (779)
Q Consensus 138 ~piAl---gpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y 212 (779)
..+++ ...+||.++.+ +.+|+ ....+.... ...++.. .++.
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD-----------------------------~~~~~~~~~--~~~~h~~--~V~~- 666 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYD-----------------------------LRNPKLPLC--TMIGHSK--TVSY- 666 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEE-----------------------------CCCCCccce--EecCCCC--CEEE-
Confidence 11222 12455555322 12221 110000000 0001100 0000
Q ss_pred cccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC------CcEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 004015 213 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISALCFDPSGILLVTA 286 (779)
Q Consensus 213 ~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s------~~~v~~f~aHt~~IsaLaFSPdG~lLATa 286 (779)
+ .... ...++++..||.|+|||+.. ..++..|.+|...+.+++|+|+|.+||+|
T Consensus 667 -----------v--~f~~-------~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 667 -----------V--RFVD-------SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred -----------E--EEeC-------CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 0 0000 11356677899999999974 36788999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee---------cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---------RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~---------rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+.||+ |+||+.....+ ...+.+. -......|.+++|+|++.+|++|+.||+|+||++
T Consensus 727 s~D~~-v~iw~~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 727 SETNE-VFVYHKAFPMP------------VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eCCCE-EEEEECCCCCc------------eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99997 89999754300 0011110 0111234999999999999999999999999997
No 30
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=7.3e-15 Score=160.69 Aligned_cols=179 Identities=15% Similarity=0.258 Sum_probs=131.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
+.|.|...+|++.+.+++..+.|.++.|+ +++++++.+++|++||+++..|++.+......++. .+ ++
T Consensus 325 G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt------s~---~~ 395 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT------SL---CI 395 (514)
T ss_pred ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee------ee---ee
Confidence 44999999999999999999999999995 56778888999999999999999888664211110 00 11
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
++.++|||
T Consensus 396 S~ng~ylA------------------------------------------------------------------------ 403 (514)
T KOG2055|consen 396 SLNGSYLA------------------------------------------------------------------------ 403 (514)
T ss_pred cCCCceEE------------------------------------------------------------------------
Confidence 22223333
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCC------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-CEE
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNI 293 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t~I 293 (779)
.++..|.|.|||..+ .++++++..-+..|+.|+|+||+++||.||.-. ..+
T Consensus 404 ----------------------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knal 461 (514)
T KOG2055|consen 404 ----------------------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNAL 461 (514)
T ss_pred ----------------------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccce
Confidence 344557788888653 578888889999999999999999999998742 346
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEee-cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~-rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
++-.+... ....++. ++..-..|+|++|||.|.|+|.|..+|.+++|.|+.|
T Consensus 462 rLVHvPS~--------------TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 462 RLVHVPSC--------------TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred EEEeccce--------------eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 77666542 0001111 1112234899999999999999999999999999865
No 31
>PTZ00420 coronin; Provisional
Probab=99.58 E-value=2.9e-13 Score=157.36 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=81.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe-
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL- 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l- 321 (779)
++..||+|+|||+.+++.+..+. |...|.+|+|+|+|.+|++++.|++ |+|||++.+ ..+..+
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg--------------~~i~tl~ 206 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQ--------------EIASSFH 206 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCC--------------cEEEEEe
Confidence 45678999999999998887776 6678999999999999999999987 999999875 222333
Q ss_pred -ecCCCccc-EEEEEEcCCCCEEEEEeCCC----eEEEEecCCCCCceee
Q 004015 322 -QRGLTNAV-IQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 -~rG~t~a~-I~sIaFSpDg~~LAtgS~DG----TVhIwdl~~~gg~~~~ 365 (779)
+.|..... ++...|++|+++|++++.|+ +|+|||+...+.+...
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~ 256 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT 256 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence 22211112 45567889999999988774 8999999876554443
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=9.8e-14 Score=158.60 Aligned_cols=266 Identities=14% Similarity=0.165 Sum_probs=173.3
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
...+.|||..+.+.++.|- +...|++++|- .+.||| +....+++||..|+.|. .+.+|.....+ +
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlS---------L 371 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLS---------L 371 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheee---------e
Confidence 4678999999999998886 48899999994 367777 45679999999999987 66677542211 0
Q ss_pred cceeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhce-----------eeecCCc
Q 004015 138 GPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG-----------IVNLGDL 204 (779)
Q Consensus 138 ~piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~G-----------l~~lGd~ 204 (779)
. ++-+.-|||..+++ .+.|....-+...+.... .......+..+|. ++--+.. ++.+.+-
T Consensus 372 ~-~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~----~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 372 D-VWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ----ANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred e-ecccCcEEEEecCCceEEEEEecCCcchhhhhhh----hcccccccceeee--cccCccEEEEecCCceEEEecCCCc
Confidence 0 11223588888764 566711000000000000 0001111111111 1111111 1111110
Q ss_pred ---c--ccccccccccccCCC-cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 004015 205 ---G--YKKLSQYCSEFLPDS-QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 278 (779)
Q Consensus 205 ---~--~~~ls~y~~~l~p~~-~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP 278 (779)
. +...++|.. ...+. .+.+. .++. ...++++++|.+.+||++...+.+.+|.+|+..|.|+.|+|
T Consensus 445 ~~~~~~~~~~~~~t~-~aHdKdIN~Va-ia~n-------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTE-RAHDKDINCVA-IAPN-------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred ccccccceehhhHHH-HhhcccccceE-ecCC-------CceEEecccccceeeecccCceEEEEeeCCccceEEEEecc
Confidence 0 000011110 01111 11111 1111 23567889999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 279 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 279 dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
..++|||+|.|+| |+||.+.+. .++.+| .|++.+ |+.++|-.+++.|+++++||-++||++++
T Consensus 516 ~dq~laT~SgD~T-vKIW~is~f--------------SClkT~-eGH~~a-Vlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 516 NDQLLATCSGDKT-VKIWSISTF--------------SCLKTF-EGHTSA-VLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ccceeEeccCCce-EEEEEeccc--------------eeeeee-cCccce-eEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 9999999999988 999999876 566777 466544 99999999999999999999999999999
Q ss_pred CCCceeeccCCCC
Q 004015 359 LGGSVNFQPTDAN 371 (779)
Q Consensus 359 ~gg~~~~~~H~~~ 371 (779)
..+..++..|.+.
T Consensus 579 ~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 579 NECEMTLDAHNDR 591 (775)
T ss_pred hhhhhhhhhccce
Confidence 9999999999654
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.56 E-value=7.2e-13 Score=160.67 Aligned_cols=219 Identities=15% Similarity=0.158 Sum_probs=140.4
Q ss_pred CCEEEEEECCCC--------cEEEEEeCCCCEEEEEEc---CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCC
Q 004015 63 PTVVHFYSLRSQ--------SYVHMLKFRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 130 (779)
Q Consensus 63 ~~tVrIWDL~Tg--------e~V~tLkf~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s 130 (779)
.++|+|||+.+. ..+..+.....|.+++|+ +.+|++ +.+++|++||+.+.+.+..+..|...
T Consensus 504 D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~------ 577 (793)
T PLN00181 504 NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR------ 577 (793)
T ss_pred CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC------
Confidence 378999998542 123445556789999995 345554 78999999999999998888776431
Q ss_pred CCccccccceeecC---ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc
Q 004015 131 GGIGIGYGPLAVGP---RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 205 (779)
Q Consensus 131 ~~~~~~~~piAlgp---RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~ 205 (779)
...+++.+ .+|+.++.+ +.+|+. ...+.+. .+....
T Consensus 578 ------V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~-----------------------------~~~~~~~----~~~~~~ 618 (793)
T PLN00181 578 ------VWSIDYSSADPTLLASGSDDGSVKLWSI-----------------------------NQGVSIG----TIKTKA 618 (793)
T ss_pred ------EEEEEEcCCCCCEEEEEcCCCEEEEEEC-----------------------------CCCcEEE----EEecCC
Confidence 12233332 345554322 222211 1100000 000000
Q ss_pred ccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEEcCCCCEEE
Q 004015 206 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLV 284 (779)
Q Consensus 206 ~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~-~v~~f~aHt~~IsaLaFSPdG~lLA 284 (779)
.+ ++.... .+ .| ..++.+..+|.|++||+++.+ ++..+.+|...|++++|. ++.+|+
T Consensus 619 --~v--~~v~~~----------~~----~g---~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv 676 (793)
T PLN00181 619 --NI--CCVQFP----------SE----SG---RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV 676 (793)
T ss_pred --Ce--EEEEEe----------CC----CC---CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE
Confidence 00 000000 00 01 135667889999999998765 678889999999999997 788999
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 285 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 285 TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|++.||+ |+|||+.....+. ....+..+ .|+. ..+.+++|+|++++||+|+.|++|+||+....
T Consensus 677 s~s~D~~-ikiWd~~~~~~~~--------~~~~l~~~-~gh~-~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 677 SSSTDNT-LKLWDLSMSISGI--------NETPLHSF-MGHT-NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEECCCE-EEEEeCCCCcccc--------CCcceEEE-cCCC-CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999997 9999997531100 01223344 3443 45889999999999999999999999998654
No 34
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.56 E-value=1.5e-13 Score=159.19 Aligned_cols=182 Identities=15% Similarity=0.218 Sum_probs=147.2
Q ss_pred CCEEEEEECCCCcEEEE-EeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHM-LKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~t-Lkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..++++||..++..+.+ +.. ...|.++++. +.+++ .+.|.++++||..+++|.+++.+|.....
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~----------- 295 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR----------- 295 (537)
T ss_pred CceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE-----------
Confidence 47789999999999888 764 6889999996 55555 47799999999999999999988743100
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.+.+ . .
T Consensus 296 -~~~~-------~------------------------------~------------------------------------ 301 (537)
T KOG0274|consen 296 -CLTI-------D------------------------------P------------------------------------ 301 (537)
T ss_pred -EEEc-------c------------------------------C------------------------------------
Confidence 0100 0 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
..+.++..|.+|+|||+.+++++.++.+|+.+|.+|.++ +.+|++|+.||+ |+|||
T Consensus 302 ---------------------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~-v~VW~ 357 (537)
T KOG0274|consen 302 ---------------------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT-VKVWD 357 (537)
T ss_pred ---------------------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce-EEEEE
Confidence 011223467899999999999999999999999999999 889999999996 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC-CCceeeccCCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL-GGSVNFQPTDA 370 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~-gg~~~~~~H~~ 370 (779)
+.++ ..++.+ +|++ ..|+++.|... .++.+|+.|++|++||+... .+..++..|..
T Consensus 358 ~~~~--------------~cl~sl-~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 358 PRTG--------------KCLKSL-SGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred hhhc--------------eeeeee-cCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence 9875 667777 5654 56999988876 89999999999999999998 88888888853
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.56 E-value=6.4e-14 Score=149.48 Aligned_cols=191 Identities=14% Similarity=0.210 Sum_probs=144.2
Q ss_pred CCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---cEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s~---rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..++++|||+.||++..+|. +.+.|+.|+++. .++.++.|++|+|||+...+.++..-+|-.
T Consensus 171 ~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-------------- 236 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-------------- 236 (460)
T ss_pred CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc--------------
Confidence 35899999999999999998 689999999974 356678899999999998776554433310
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.. .|+.- |
T Consensus 237 ~V~-----~L~lh-------------P----------------------------------------------------- 245 (460)
T KOG0285|consen 237 GVY-----CLDLH-------------P----------------------------------------------------- 245 (460)
T ss_pred eeE-----EEecc-------------c-----------------------------------------------------
Confidence 000 01100 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.- ..++++..|.+++|||++++..+..|.+|+.+|..+.|.|-.-.++|||.|++ |++||
T Consensus 246 -Tl------------------dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWD 305 (460)
T KOG0285|consen 246 -TL------------------DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWD 305 (460)
T ss_pred -cc------------------eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEee
Confidence 00 01234456789999999999999999999999999999997777999999998 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCc
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT 374 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~ 374 (779)
+..+ +.+.++. ++...|.+++..|+-..||+++.|. |+-|++-.+.-..++.+|...+..
T Consensus 306 l~ag--------------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 306 LRAG--------------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINT 365 (460)
T ss_pred eccC--------------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeee
Confidence 9876 2233331 1222389999999999999998885 888999887777778888766553
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=3.1e-13 Score=154.73 Aligned_cols=118 Identities=11% Similarity=0.165 Sum_probs=96.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++++..||+|+|||..++-|+.+|..|++.|++++|+..|+.|+++|-||+ |+.||+... +...+
T Consensus 365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-VRAwDlkRY--------------rNfRT 429 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-VRAWDLKRY--------------RNFRT 429 (893)
T ss_pred EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe-EEeeeeccc--------------ceeee
Confidence 456788999999999999999999999999999999999999999999998 899998764 22222
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCC-eEEEEecCCCCCceeeccCCCCCCc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAINPLGGSVNFQPTDANFTT 374 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DG-TVhIwdl~~~gg~~~~~~H~~~~~~ 374 (779)
+ ..-.+....|++-.|.|..+.+|+.|. .|+||++.++.-.-.+.+|...+..
T Consensus 430 f-t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 430 F-TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG 483 (893)
T ss_pred e-cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee
Confidence 2 111122245777777799999999987 5999999998777788999877664
No 37
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.55 E-value=3.3e-13 Score=140.58 Aligned_cols=116 Identities=14% Similarity=0.203 Sum_probs=100.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+++.||++++||+.+++....|.+|+..|.+++||+|.+.++|||.|.+ |++|++... +.|+.
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT-iklwnt~g~---------------ck~t~ 142 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT-IKLWNTLGV---------------CKYTI 142 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcce-eeeeeeccc---------------EEEEE
Confidence 35678999999999999999999999999999999999999999999987 999998753 56777
Q ss_pred ecCCCcccEEEEEEcCC--CCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 322 QRGLTNAVIQDISFSDD--SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpD--g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
.++.....|.+++|+|. .-+|+++|.|+||+|||+....-...+-+|+....
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN 196 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence 77654456999999998 78999999999999999998877777777754433
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.55 E-value=6.6e-15 Score=156.24 Aligned_cols=214 Identities=17% Similarity=0.234 Sum_probs=146.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
.+||+|||..+-++++.|.. .+.|..+.+.+++|+. +.|.+|.|||..|++++.++..|... .+
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHcea--------------VL 281 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--------------VL 281 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcce--------------eE
Confidence 58999999999999998875 6889999998887665 67889999999999999998876321 11
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
.|.++..-.+. .+....++.|-+.+...++--....|+...
T Consensus 282 -----hlrf~ng~mvt--------------------cSkDrsiaVWdm~sps~it~rrVLvGHrAa-------------- 322 (499)
T KOG0281|consen 282 -----HLRFSNGYMVT--------------------CSKDRSIAVWDMASPTDITLRRVLVGHRAA-------------- 322 (499)
T ss_pred -----EEEEeCCEEEE--------------------ecCCceeEEEeccCchHHHHHHHHhhhhhh--------------
Confidence 11121100000 112233333333322211100011122210
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
+..+--+ ...+++++.|.+|++|++.+.+.+.++.+|...|.|+.+ .|+++++||.|.+ |++||+..
T Consensus 323 ---VNvVdfd-------~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~ 389 (499)
T KOG0281|consen 323 ---VNVVDFD-------DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIEC 389 (499)
T ss_pred ---eeeeccc-------cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccc
Confidence 0000001 124567788999999999999999999999999999986 5899999999976 99999987
Q ss_pred CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 301 ~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+ .+|..| .|+.. -|.+|-|. .+.+++|..||+|+|||+...-
T Consensus 390 G--------------~cLRvL-eGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 390 G--------------ACLRVL-EGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred c--------------HHHHHH-hchHH-hhhheeec--CceeeeccccceEEEEeccccc
Confidence 6 233333 35321 28899995 6789999999999999997753
No 39
>PTZ00421 coronin; Provisional
Probab=99.54 E-value=9.3e-13 Score=151.57 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=86.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+++..||.|+|||+.+++.+..+.+|...|.+|+|+|+|.+|||++.||+ |+|||++.+ ..+..+
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg--------------~~v~tl 206 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDG--------------TIVSSV 206 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCC--------------cEEEEE
Confidence 45567899999999999999999999999999999999999999999997 899999875 234444
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEe----CCCeEEEEecCCCCCce
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISS----SRGTSHLFAINPLGGSV 363 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS----~DGTVhIwdl~~~gg~~ 363 (779)
. ++....+..+.|.+++..|++++ .|++|+|||+.......
T Consensus 207 ~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 207 E-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred e-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 2 33334466788999988877654 48999999998765443
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.1e-13 Score=160.09 Aligned_cols=224 Identities=15% Similarity=0.266 Sum_probs=156.7
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|++||-+=|.+++.+. +.++|+.|+|. .-+++. +.|.+|+||+..+.+|+++|.+|-.-.. .
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVR------------t 98 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVR------------T 98 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeE------------E
Confidence 569999999999999875 58999999995 334444 6778999999999999999998843111 1
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.+-. -|+-.++ +..++..|-+.+-+.++ ...|+..|. .|....
T Consensus 99 ~~FHheyPWIlSAS---------------------------DDQTIrIWNwqsr~~ia---vltGHnHYV----McAqFh 144 (1202)
T KOG0292|consen 99 VFFHHEYPWILSAS---------------------------DDQTIRIWNWQSRKCIA---VLTGHNHYV----MCAQFH 144 (1202)
T ss_pred eeccCCCceEEEcc---------------------------CCCeEEEEeccCCceEE---EEecCceEE----EeeccC
Confidence 11111 2444443 34444444444444333 123444332 122212
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC----------------------------cEE-EEeccCC
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----------------------------NVI-AQFRAHK 268 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~----------------------------~~v-~~f~aHt 268 (779)
|.. ..+++++-|-+|+|||+..- .++ ..+.+|.
T Consensus 145 ptE------------------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 145 PTE------------------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred Ccc------------------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 211 13456677889999998531 123 3467999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
-.|+-.+|.|.--++++|++|. .|++|+.... ..+.+-+ .||+.+ .|.++-|.|.-..|.+.|.|
T Consensus 207 RGVNwaAfhpTlpliVSG~DDR-qVKlWrmnet------------KaWEvDt-crgH~n-nVssvlfhp~q~lIlSnsED 271 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDR-QVKLWRMNET------------KAWEVDT-CRGHYN-NVSSVLFHPHQDLILSNSED 271 (1202)
T ss_pred cccceEEecCCcceEEecCCcc-eeeEEEeccc------------cceeehh-hhcccC-CcceEEecCccceeEecCCC
Confidence 9999999999999999999996 5999998754 2344333 378764 59999999999999999999
Q ss_pred CeEEEEecCCCCCceeec
Q 004015 349 GTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 349 GTVhIwdl~~~gg~~~~~ 366 (779)
++|+|||+....+..+|+
T Consensus 272 ksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 272 KSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ccEEEEecccccceeeee
Confidence 999999999988777773
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.54 E-value=8.4e-14 Score=143.04 Aligned_cols=134 Identities=22% Similarity=0.400 Sum_probs=110.1
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..++||+||.+||..+++|.|+++|.++..+ +++|.++....|..||+.++..++...- | | +
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~---P--~----------n- 226 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM---P--C----------N- 226 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC---c--c----------c-
Confidence 3589999999999999999999999999995 8999999999999999999998776642 1 1 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ +.+ .++|.
T Consensus 227 V-------~SA----------SL~P~------------------------------------------------------ 235 (334)
T KOG0278|consen 227 V-------ESA----------SLHPK------------------------------------------------------ 235 (334)
T ss_pred c-------ccc----------cccCC------------------------------------------------------
Confidence 0 000 01111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
...++.+..++.++.||+.++..+-.+ ++|-+||-||+|+|||.+.|+||.||+ |+||..
T Consensus 236 ------------------k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt 296 (334)
T KOG0278|consen 236 ------------------KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQT 296 (334)
T ss_pred ------------------CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEe
Confidence 012345678899999999999988886 899999999999999999999999998 899998
Q ss_pred CCC
Q 004015 299 IPG 301 (779)
Q Consensus 299 ~~~ 301 (779)
.++
T Consensus 297 ~~~ 299 (334)
T KOG0278|consen 297 TPG 299 (334)
T ss_pred cCC
Confidence 875
No 42
>PTZ00421 coronin; Provisional
Probab=99.54 E-value=1.8e-12 Score=149.15 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=126.3
Q ss_pred CCEEEEEECCCCc-------EEEEEe-CCCCEEEEEEc---CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCC
Q 004015 63 PTVVHFYSLRSQS-------YVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 130 (779)
Q Consensus 63 ~~tVrIWDL~Tge-------~V~tLk-f~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s 130 (779)
.++|+|||+.++. .+.+|. +...|..|+|+ ..+|++ +.|++|+|||+.+++.+..+..|...
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~------ 170 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ------ 170 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc------
Confidence 4889999998763 455665 36789999996 246655 77999999999999988888665321
Q ss_pred CCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 131 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 131 ~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
+ ..|++.. +|.
T Consensus 171 ---------V----~sla~sp---------------------------dG~----------------------------- 181 (493)
T PTZ00421 171 ---------I----TSLEWNL---------------------------DGS----------------------------- 181 (493)
T ss_pred ---------e----EEEEEEC---------------------------CCC-----------------------------
Confidence 1 0122220 111
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEcCCCCEEEEEe--
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFDPSGILLVTAS-- 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~-IsaLaFSPdG~lLATaS-- 287 (779)
.++++..||.|+|||+++++.+.++.+|.+. +..+.|.+++.+|++++
T Consensus 182 -----------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s 232 (493)
T PTZ00421 182 -----------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232 (493)
T ss_pred -----------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecC
Confidence 1234467899999999999999999999876 45688999988887765
Q ss_pred --CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCC
Q 004015 288 --VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 360 (779)
Q Consensus 288 --~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~g 360 (779)
.|++ |+|||++... .......+ .....+....|++|+++|++++ .|++|++|++....
T Consensus 233 ~s~Dr~-VklWDlr~~~-----------~p~~~~~~---d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 233 KSQQRQ-IMLWDTRKMA-----------SPYSTVDL---DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCCCe-EEEEeCCCCC-----------CceeEecc---CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 3565 9999997530 00111111 1222366778999999999988 49999999998754
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=1.1e-13 Score=141.28 Aligned_cols=223 Identities=13% Similarity=0.168 Sum_probs=147.9
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++||+|+...|.++++... ...|.+++.+ .++-+.+.|+.|++||+.|++.++.+.+|-. ..|
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a------------qVN 105 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA------------QVN 105 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc------------eee
Confidence 48999999999999999986 5689998884 5566668899999999999999999999832 233
Q ss_pred ceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.+.+.- .-++.++ ..+.+.. +++-. ..++.+. .+ +.
T Consensus 106 tV~fNeesSVv~Sgs---------------------------fD~s~r~--wDCRS-----------~s~ePiQ-il-de 143 (307)
T KOG0316|consen 106 TVRFNEESSVVASGS---------------------------FDSSVRL--WDCRS-----------RSFEPIQ-IL-DE 143 (307)
T ss_pred EEEecCcceEEEecc---------------------------ccceeEE--EEccc-----------CCCCccc-hh-hh
Confidence 343211 1122221 1111110 11000 0000000 00 00
Q ss_pred cCCCcCccccccCCCCCCCccCC-cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNG-HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g-~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
..++..++. ++. .++.++.||+++.||++.+.......+| ||+|++|++||..++.++-|++ +++
T Consensus 144 a~D~V~Si~-----------v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~st-lrL 209 (307)
T KOG0316|consen 144 AKDGVSSID-----------VAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDST-LRL 209 (307)
T ss_pred hcCceeEEE-----------ecccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccce-eee
Confidence 011111111 111 3456678999999999999887766665 9999999999999999999987 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
.|-.++ +.| .-..|+.+.. =.++||+....++++||.||.|.+||+........+.-|
T Consensus 210 lDk~tG--------------klL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 210 LDKETG--------------KLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV 268 (307)
T ss_pred cccchh--------------HHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence 998776 222 2224444332 358899999999999999999999999887665555544
No 44
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.52 E-value=4.4e-13 Score=138.61 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=145.2
Q ss_pred CCEEEEEECCCCcEEEEEeC---CCCEEEEEEc---C-cEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS---S-RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf---~s~V~sV~~s---~-rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
..+|++|++.-+..++.+.. ...|-.++|. . .+.+++.+++|++||+++.++...+.+..
T Consensus 41 dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~------------- 107 (313)
T KOG1407|consen 41 DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG------------- 107 (313)
T ss_pred CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-------------
Confidence 47899999998877776654 3578888894 3 44555789999999999999998886531
Q ss_pred cccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 136 GYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 136 ~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
...-++.+| .++|+..++-. +.. .+..+. ..+...-++...
T Consensus 108 eni~i~wsp~g~~~~~~~kdD~---------------------------it~--id~r~~-----~~~~~~~~~~e~--- 150 (313)
T KOG1407|consen 108 ENINITWSPDGEYIAVGNKDDR---------------------------ITF--IDARTY-----KIVNEEQFKFEV--- 150 (313)
T ss_pred cceEEEEcCCCCEEEEecCccc---------------------------EEE--EEeccc-----ceeehhccccee---
Confidence 001123333 45555433200 000 000000 000000000000
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
.+.. ..++ +..|.-+...|+|.|-...+-+++.+++||....-||+|+|+|++||+||.|. .+
T Consensus 151 ne~~--------w~~~--------nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA-lv 213 (313)
T KOG1407|consen 151 NEIS--------WNNS--------NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-LV 213 (313)
T ss_pred eeee--------ecCC--------CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc-ee
Confidence 0000 0000 11234456679999999999999999999999999999999999999999996 58
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
-+||+..- .++..+.|-. -+|..|+||.||++||++|.|..|-|=.+.++...-.+.
T Consensus 214 SLWD~~EL--------------iC~R~isRld--wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 214 SLWDVDEL--------------ICERCISRLD--WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred eccChhHh--------------hhheeecccc--CceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 99999763 3333343432 359999999999999999999999998888765544443
No 45
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=158.43 Aligned_cols=181 Identities=13% Similarity=0.169 Sum_probs=140.1
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
...++++||+.+|+|+++|.. .+.|+.+..-+.+++. +.|.+|++||+.++.++.++..|..+. +.
T Consensus 269 ~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V------------~~ 336 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV------------NC 336 (537)
T ss_pred cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccE------------EE
Confidence 368999999999999999995 6778877776555444 699999999999999999997652211 01
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+. +. +
T Consensus 337 v~-------~~-----------------------------~--------------------------------------- 341 (537)
T KOG0274|consen 337 VQ-------LD-----------------------------E--------------------------------------- 341 (537)
T ss_pred EE-------ec-----------------------------C---------------------------------------
Confidence 10 10 0
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
..+.+++.||+|+|||+.++++++++++|+..|.+|.|+.. .++.+||.|++ |++||+.
T Consensus 342 -------------------~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~ 400 (537)
T KOG0274|consen 342 -------------------PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLR 400 (537)
T ss_pred -------------------CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCC
Confidence 01234567899999999999999999999999999999887 89999999977 9999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.. ..+++.| .+++ +.+.++.+ .+++|.+++.|++|++||++.++....+.+
T Consensus 401 ~~-------------~~c~~tl-~~h~-~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 401 TK-------------RKCIHTL-QGHT-SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ch-------------hhhhhhh-cCCc-cccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 63 0233444 2322 33555544 578999999999999999999998888877
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.51 E-value=4.9e-13 Score=138.61 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=81.9
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCC---------CCCCCccC
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI---------LGTSSACD 310 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~---------~g~~s~~~ 310 (779)
++.+..+|.|.+||++++ +.+..-+-|...|+.|+|+||.++++|+|.|.+ -++||+.+.. +-+..+..
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeecccccceecc
Confidence 456678999999999997 566677899999999999999999999999977 7999987531 10111000
Q ss_pred C---------CCceeE-----------------------EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 311 A---------GTSYVH-----------------------LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 311 ~---------~~s~~~-----------------------l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+ .....- +-++ .|+ -.+|.++||+|||+-.++|+.||.|+|.....
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGH-FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGH-FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-ccc-ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0 000000 0011 122 24599999999999999999999999865543
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.51 E-value=7.8e-13 Score=146.74 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=90.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+++..|+.|.+|+=.-.+--.+++.|..-|.|+.|||||.++||++.||+ |.|||-.++ ..++.|
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktg--------------e~vg~l 228 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTG--------------EKVGEL 228 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCc--------------cEEEEe
Confidence 45677889999987777777888999999999999999999999999998 899998776 455666
Q ss_pred ecC-CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 322 QRG-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG-~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.-. .+...|+.|+||||++.|+++|.|.|++|||++......+|
T Consensus 229 ~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 229 EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 421 11234999999999999999999999999999988655555
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=148.87 Aligned_cols=222 Identities=15% Similarity=0.214 Sum_probs=153.1
Q ss_pred CCEEEEEECCCCc--EEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRSQS--YVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~Tge--~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
...|++|+.-.++ .+.+|.. .++|.++.|. ...||.+.++..++|++..++...||.+|.....+. .
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a-------k 268 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA-------K 268 (459)
T ss_pred hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee-------h
Confidence 4779999987766 5666655 5789999994 567888999999999999999999999986532210 0
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+-.+- +..++ +++..++ .++|+.. .||...
T Consensus 269 ---~~~~~-------------------------~~vVs--gs~DRti----------------K~WDl~k----~~C~kt 298 (459)
T KOG0288|consen 269 ---FKLSH-------------------------SRVVS--GSADRTI----------------KLWDLQK----AYCSKT 298 (459)
T ss_pred ---hhccc-------------------------cceee--ccccchh----------------hhhhhhh----hheecc
Confidence 00000 00000 1122222 1223221 233321
Q ss_pred -cCCCcCccccccCCCCCCCccC--CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 217 -LPDSQNSLQSAIPGGKSNGTVN--GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 217 -~p~~~~si~sa~~~~~~~g~v~--g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
+|.. ..+-++. ..++++..|++|+.||+++..++.....|. .|++|..+++|.-|.+++.|.+ +
T Consensus 299 ~l~~S-----------~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l 365 (459)
T KOG0288|consen 299 VLPGS-----------QCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-L 365 (459)
T ss_pred ccccc-----------cccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-e
Confidence 1111 1111111 145677889999999999999999998886 9999999999999999999976 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
+++|+++. ...+.|+-..-.+.+.+..++||||+.|+|+||.||.|+||++.+......+.
T Consensus 366 ~viDlRt~------------eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 366 KVIDLRTK------------EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred eeeecccc------------cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec
Confidence 99999875 34555554322233458899999999999999999999999998876665554
No 49
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.50 E-value=1.6e-12 Score=133.76 Aligned_cols=236 Identities=15% Similarity=0.214 Sum_probs=144.5
Q ss_pred EEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecC--ceeEeeCCCcee-cCCCccCCcccccc
Q 004015 95 VVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVV-SNDGRVNPQHLMQS 170 (779)
Q Consensus 95 lLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~~i~-~~sgrvspq~ls~s 170 (779)
+|| .++|.+|++|.+.|+.|.+++.- +. -..|.+.+.| +.||.++++-++ .+...-+|. |-
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh-~d-----------sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~---Pv 76 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQH-PD-----------SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN---PV 76 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEec-Cc-----------cceeeEEEcCCcchhhhccCCeeEEEEccCCCCC---ce
Confidence 344 37899999999999999999953 21 1346666666 899999876432 221111111 00
Q ss_pred cccccccCCCcceeeeeccc-ccchhceeeecCCccccccc----cccccccCCCcCccccccCCCCCCCccCCcccccC
Q 004015 171 RSFSGFASNGSRVAHYAKES-SKHLAAGIVNLGDLGYKKLS----QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDAD 245 (779)
Q Consensus 171 ~~~s~~~s~g~~va~~A~~~-sK~La~Gl~~lGd~~~~~ls----~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~ 245 (779)
..|. ...+.|..++... +|- ++.-||.|.-++- ..|...+... ..+.......+ -+.+++++
T Consensus 77 ~t~e---~h~kNVtaVgF~~dgrW----MyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpn-----QteLis~d 143 (311)
T KOG0315|consen 77 ATFE---GHTKNVTAVGFQCDGRW----MYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPN-----QTELISGD 143 (311)
T ss_pred eEEe---ccCCceEEEEEeecCeE----EEecCCCceEEEEeccCcccchhccCC-CCcceEEecCC-----cceEEeec
Confidence 0111 1223344444332 121 1222333322221 1111111000 00001101111 23677889
Q ss_pred CCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
++|.|+|||+....+...+. .-..+|.+|...|||++|+.+-..|+ ..+|++..+..-+ ....+.+++-
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s--------~l~P~~k~~a- 213 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTAS--------ELEPVHKFQA- 213 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccc--------cceEhhheec-
Confidence 99999999999987766654 44579999999999999999999998 7999998752111 2233333321
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC-CCceeeccCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL-GGSVNFQPTD 369 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~-gg~~~~~~H~ 369 (779)
+...|..+-||||++|||++|+|.|++||++..+ .....+++|.
T Consensus 214 -h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 214 -HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred -ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 1234899999999999999999999999999987 6666777874
No 50
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.3e-12 Score=144.56 Aligned_cols=231 Identities=19% Similarity=0.264 Sum_probs=152.0
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEec-CCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT-NPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t-~p~~~~~p~s~~~~~~~~ 138 (779)
+.|.+|+..+++......| ...|.+|.++ +.+||| ..++.|.|||..+.+.+.++.. |... ++
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r------------vg 264 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASR------------VG 264 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCce------------eE
Confidence 6799999999997777778 7899999996 788888 5678999999999998888876 4221 22
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.+|....-|..+ +....+.++.....+++.. +..++.. .+... ...+
T Consensus 265 ~laW~~~~lssG---------------------------sr~~~I~~~dvR~~~~~~~--~~~~H~q--eVCgL--kws~ 311 (484)
T KOG0305|consen 265 SLAWNSSVLSSG---------------------------SRDGKILNHDVRISQHVVS--TLQGHRQ--EVCGL--KWSP 311 (484)
T ss_pred EEeccCceEEEe---------------------------cCCCcEEEEEEecchhhhh--hhhcccc--eeeee--EECC
Confidence 233221111111 1222333444443333321 0111110 00000 0001
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEe--CCCCEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTAS--VQGHNINI 295 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS--~DGt~I~V 295 (779)
+ ...++++..|+.|.|||.....++.+|..|+.+|-+|+|+| ...+||||+ .|++ |++
T Consensus 312 d------------------~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~f 372 (484)
T KOG0305|consen 312 D------------------GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKF 372 (484)
T ss_pred C------------------CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEE
Confidence 1 12467788999999999999999999999999999999999 577999974 4765 999
Q ss_pred EeCCCCCC------CCC--------------CccCCCCceeEEEEe--------ecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 296 FKIIPGIL------GTS--------------SACDAGTSYVHLYRL--------QRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 296 wdi~~~~~------g~~--------------s~~~~~~s~~~l~~l--------~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
|++.++.. ++. +.-+-......+|++ ..|+ ..+|..+++||||..|++|+.
T Consensus 373 wn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECCCCCEEEEecc
Confidence 99987632 110 000111112233433 1233 356999999999999999999
Q ss_pred CCeEEEEecCCC
Q 004015 348 RGTSHLFAINPL 359 (779)
Q Consensus 348 DGTVhIwdl~~~ 359 (779)
|.|+++|++-+.
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999999775
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.5e-13 Score=139.93 Aligned_cols=192 Identities=17% Similarity=0.240 Sum_probs=136.8
Q ss_pred CCEEEEEECCC-CcEEEEEe-CCCCEEEEEEc---Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRS-QSYVHMLK-FRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~T-ge~V~tLk-f~s~V~sV~~s---~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
.++++|||+.- ...++.+| ++..|++|.+| ++ +|..+.|++|++||..-.+-+.|+.+|.++
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~------------ 149 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC------------ 149 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE------------
Confidence 47899999632 34555554 47899999996 33 455589999999999988888888776321
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.|.. .++| ..
T Consensus 150 -----------Iy~a--------------------~~sp--~~------------------------------------- 159 (311)
T KOG0277|consen 150 -----------IYQA--------------------AFSP--HI------------------------------------- 159 (311)
T ss_pred -----------EEEE--------------------ecCC--CC-------------------------------------
Confidence 1210 0000 00
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINI 295 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~V 295 (779)
...|++++.||.+++||++....-..|++|...|.|+.|+. +-.+||||+.|+. |++
T Consensus 160 ---------------------~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~ 217 (311)
T KOG0277|consen 160 ---------------------PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRG 217 (311)
T ss_pred ---------------------CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEE
Confidence 01245567889999999986544444999999999999998 6779999999986 999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD-g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
||++.- -.++..| .|+.-| |..|.|||- ...||++|.|.|++||+.........-..|...+.
T Consensus 218 wDir~~-------------r~pl~eL-~gh~~A-VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv 281 (311)
T KOG0277|consen 218 WDIRNL-------------RTPLFEL-NGHGLA-VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFV 281 (311)
T ss_pred Eehhhc-------------cccceee-cCCceE-EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEE
Confidence 999874 1345666 454433 999999995 55799999999999999986554443333444443
No 52
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.48 E-value=9.7e-13 Score=144.10 Aligned_cols=133 Identities=13% Similarity=0.249 Sum_probs=101.9
Q ss_pred cccccCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIV--SKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~--s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.|.+...++.+.|||++ +.++....++|+.+|.|++|+| ++.+|||||.|++ |.+||++.- ..
T Consensus 242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL-------------~~ 307 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL-------------NK 307 (422)
T ss_pred hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc-------------cc
Confidence 45566789999999999 5667778889999999999999 6779999999998 899999874 23
Q ss_pred EEEEeecCCCcccEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCc--c-CCCcCCcceecCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT--K-HGAMAKSGVRWPP 388 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpD-g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~--~-~~~~~~~~~r~~~ 388 (779)
.++++. |+ ...|..|.|||. ...||+++.|+.++|||+..-++..+..--.+.+++ | ||+....+.-+++
T Consensus 308 ~lh~~e-~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 308 PLHTFE-GH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred Cceecc-CC-CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence 456663 33 345999999995 557899999999999999998888764433444444 2 3665555444433
No 53
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=2.5e-13 Score=149.71 Aligned_cols=189 Identities=17% Similarity=0.274 Sum_probs=143.5
Q ss_pred CEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tL-kf~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|.||+..+.+.++++ +|+..|+++.|. ++++|++ ..+.|.|||..+...+.++..|..+
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~ap--------------- 112 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAP--------------- 112 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCc---------------
Confidence 67999999999998876 699999999995 8999886 4679999997775555555444211
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+- ..-|. |+ +
T Consensus 113 v~----~~~f~-------------~~--------------d--------------------------------------- 122 (487)
T KOG0310|consen 113 VH----VTKFS-------------PQ--------------D--------------------------------------- 122 (487)
T ss_pred ee----EEEec-------------cc--------------C---------------------------------------
Confidence 10 00110 10 0
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKI 298 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi 298 (779)
+..+.+++.++.+++||+.+..++..+.+|+..|.|.+|+|- +.+++|||-||+ |++||+
T Consensus 123 ------------------~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~-vrl~Dt 183 (487)
T KOG0310|consen 123 ------------------NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK-VRLWDT 183 (487)
T ss_pred ------------------CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce-EEEEEe
Confidence 113445677889999999999887899999999999999995 669999999998 999999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc-CCCCCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP-TDANFT 373 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~-H~~~~~ 373 (779)
+.. + ..++++.-| ++|-+++|=|.|..||+++. ..|+|||+..++...+... |...++
T Consensus 184 R~~------------~-~~v~elnhg---~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 184 RSL------------T-SRVVELNHG---CPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred ccC------------C-ceeEEecCC---CceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEE
Confidence 874 1 345666544 56999999999999988864 4799999998877776655 755444
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=8e-14 Score=146.91 Aligned_cols=109 Identities=23% Similarity=0.407 Sum_probs=96.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+++..||.|+||.+.++.|+..|. +|+..|+||.||.|+..++++|.|-+ ++|.-+..+ ..+..
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlKSG--------------K~LKE 343 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLKSG--------------KCLKE 343 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccccc--------------hhHHH
Confidence 456789999999999999999998 99999999999999999999999966 899888765 45555
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
+ ||++ .-|..+.|++||.+++++|+||||+||+..+..+..+|+.
T Consensus 344 f-rGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 344 F-RGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred h-cCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 5 7765 4599999999999999999999999999999988888864
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=8e-13 Score=145.79 Aligned_cols=181 Identities=17% Similarity=0.237 Sum_probs=131.6
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
+.|+|||+++...+.+++- ..+|..+.|+ ..+++.+ .+..+++||+.+......+.+|..-.-|
T Consensus 90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~----------- 158 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC----------- 158 (487)
T ss_pred CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe-----------
Confidence 4599999988777777764 6899999996 4455554 5567899999998875567666431111
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.++. |. ++.
T Consensus 159 --------g~~~-------------~~-------------~~h------------------------------------- 167 (487)
T KOG0310|consen 159 --------GDIS-------------PA-------------NDH------------------------------------- 167 (487)
T ss_pred --------eccc-------------cC-------------CCe-------------------------------------
Confidence 0110 00 000
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
-++++++||.|++||+++. ..+..| .|..||..+.|=|+|.++|||+ |..|+|||
T Consensus 168 ---------------------ivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWD 223 (487)
T KOG0310|consen 168 ---------------------IVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVWD 223 (487)
T ss_pred ---------------------EEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEEE
Confidence 1346789999999999987 555555 6889999999999999999988 56799999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+..+ .+.++.+ ..+...|+|+++..|++.|.+++.|+.|+||++..+.-.-.+
T Consensus 224 l~~G-------------~qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 224 LTTG-------------GQLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred ecCC-------------ceehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 9876 1333332 223345999999999999999999999999999887544333
No 56
>PTZ00420 coronin; Provisional
Probab=99.47 E-value=3.8e-12 Score=148.17 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=90.5
Q ss_pred cccCCCCeEEEEECCCC--------cEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCCEEEEEeCCCCCCCCCCccCCC
Q 004015 242 PDADNVGMVIVRDIVSK--------NVIAQFRAHKSPISALCFDPSGIL-LVTASVQGHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~--------~~v~~f~aHt~~IsaLaFSPdG~l-LATaS~DGt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
++++.||.|+|||+.++ .++..+.+|...|.+|+|+|++.. ||||+.||+ |+|||+..+
T Consensus 91 ASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt-IrIWDl~tg----------- 158 (568)
T PTZ00420 91 ASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF-VNIWDIENE----------- 158 (568)
T ss_pred EEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe-EEEEECCCC-----------
Confidence 34567899999999764 245678899999999999999975 579999987 899999875
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
..++.+.. ...|.+++|+|||++|++++.|++|+|||+........+.+|...
T Consensus 159 ---~~~~~i~~---~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~ 211 (568)
T PTZ00420 159 ---KRAFQINM---PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211 (568)
T ss_pred ---cEEEEEec---CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence 23334421 235999999999999999999999999999987666677888643
No 57
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.46 E-value=1.8e-13 Score=157.70 Aligned_cols=117 Identities=13% Similarity=0.259 Sum_probs=103.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.|++++.|++.++|......+++.|.+|-+.|.|++|.|+..|+||||.|.+ +++||+.++ ..+.++
T Consensus 507 YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G------------~~VRiF 573 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTG------------NSVRIF 573 (707)
T ss_pred EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCC------------cEEEEe
Confidence 4788899999999999999999999999999999999999999999999977 899999987 223333
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
+|++ +.|.+++|||+|+|||+|+.||.|+|||+........+.+|++.+.
T Consensus 574 ---~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 574 ---TGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY 623 (707)
T ss_pred ---cCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee
Confidence 6743 5699999999999999999999999999998877788899976554
No 58
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=155.64 Aligned_cols=270 Identities=24% Similarity=0.362 Sum_probs=170.0
Q ss_pred EEECCCCcEEEEEeCCCCEEEEEE--cCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecCc
Q 004015 68 FYSLRSQSYVHMLKFRSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPR 145 (779)
Q Consensus 68 IWDL~Tge~V~tLkf~s~V~sV~~--s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpR 145 (779)
|=++++...++.+++ +|..++| ++.+|+++.-..+.|++++.++.+.++..+ +.+ +..+|+++.++
T Consensus 302 f~S~a~i~QfkAhks--piSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~---~qs-------~~~s~ra~t~a 369 (788)
T KOG2109|consen 302 FDSFADIRQFKAHKS--PISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVS---DQS-------LVVSPRANTAA 369 (788)
T ss_pred ccchhhhhheeeecC--cccccccccCceEEEEEeeccceeeeEEecccccccccc---ccc-------cccchhcchHH
Confidence 334444444555544 5555555 678888888888888888888877666543 122 34567888888
Q ss_pred eeEeeCCCce---ecCCC-ccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc----cccccccc
Q 004015 146 WLAYSGSPVV---VSNDG-RVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL----SQYCSEFL 217 (779)
Q Consensus 146 wLAyas~~~i---~~~sg-rvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l----s~y~~~l~ 217 (779)
||++..-... +...+ +-.+-.+.++ -.+. +.+++.|-.|+.-.|......+ ..|+....
T Consensus 370 viqdicfs~~s~~r~~gsc~Ge~P~ls~t----------~~lp---~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s~ 436 (788)
T KOG2109|consen 370 VIQDICFSEVSTIRTAGSCEGEPPALSLT----------CQLP---AYADTSLDLGLQSSGGLAAEGLATSSAGYTAHSY 436 (788)
T ss_pred HHHHHhhhhhcceEeecccCCCCcccccc----------cccc---hhhchhhhccccccCcccceeeeecccccccccc
Confidence 8888653321 11000 0000011110 0000 0111222223322222221111 11221111
Q ss_pred CCCcCccc--cccCCCCCCCccCCcccccCCCCeEEEEECC-----CC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 218 PDSQNSLQ--SAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-----SK-NVIAQFRAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 218 p~~~~si~--sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~-----s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
- .++.. +..++.+..|.+.+..+.++. |.+.+.++. ++ -+++++-+|..++..+.|+++++++.+++..
T Consensus 437 ~--asSv~s~s~~pd~ks~gv~~gsv~k~~q-~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~ 513 (788)
T KOG2109|consen 437 T--ASSVFSRSVKPDSKSVGVGSGSVTKANQ-GVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLSADAN 513 (788)
T ss_pred c--cceeeccccccchhhccceeeeccccCc-cchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceeccccc
Confidence 0 01111 223445555555444444333 555444432 23 5778899999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
++.+++|.+++...|++.+ .+.|+|+++||.|.++|..++|+-|++|+|.....+|.|||.+++|++....++|+
T Consensus 514 e~ef~~f~V~Ph~~wssla-----av~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~~~TthVfk~hpYgg~aeqrth~ 588 (788)
T KOG2109|consen 514 ENEFNIFLVMPHATWSSLA-----AVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTNHATTHVFKVHPYGGKAEQRTHG 588 (788)
T ss_pred ccccceEEeecccccHHHh-----hhhhhhhccCCCccceeeeeEeecchhhhhhhhcCCceeeeeeccccccccceecC
Confidence 9988999999986666543 46899999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 004015 370 A 370 (779)
Q Consensus 370 ~ 370 (779)
+
T Consensus 589 ~ 589 (788)
T KOG2109|consen 589 D 589 (788)
T ss_pred C
Confidence 6
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1e-11 Score=129.10 Aligned_cols=176 Identities=19% Similarity=0.277 Sum_probs=132.9
Q ss_pred CEEEEEECCCC---cEEEEEe--CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCC--CCcEEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLRSQ---SYVHMLK--FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~Tg---e~V~tLk--f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~--T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
++||||++.++ .+...|. ++-.|++|+++ +++||+ ++|.++.||--. +++|+.+|++|.+..-|
T Consensus 37 k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~------ 110 (312)
T KOG0645|consen 37 KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKC------ 110 (312)
T ss_pred ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeE------
Confidence 78999999853 3333332 46789999995 788887 799999999876 67899999998764322
Q ss_pred cccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 134 ~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
+ |++. +|.++|
T Consensus 111 ------V-------aws~---------------------------sG~~LA----------------------------- 121 (312)
T KOG0645|consen 111 ------V-------AWSA---------------------------SGNYLA----------------------------- 121 (312)
T ss_pred ------E-------EEcC---------------------------CCCEEE-----------------------------
Confidence 2 2321 222221
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC---CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS---KNVIAQFRAHKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s---~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG 290 (779)
+.+-|..|-||.+.. ..+++.++.|+..|--+.|.|.-.+|+++|-|.
T Consensus 122 -----------------------------TCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 122 -----------------------------TCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred -----------------------------EeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 123355688888874 368899999999999999999999999999997
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+ |++|+-.+. ..-.+..+|. |++. .|++++|.+.|..|++++.|+|++||.+-
T Consensus 173 T-Ik~~~~~~d-----------ddW~c~~tl~-g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 173 T-IKVYRDEDD-----------DDWECVQTLD-GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred e-EEEEeecCC-----------CCeeEEEEec-Cccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 6 999987642 1234555663 4433 59999999999999999999999999974
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.45 E-value=1.1e-12 Score=140.28 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=89.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..|+.|+.||+...+.++++.+|-+.|.||+..|.-..|+||+.|.+ ++|||+++- ..+..| .
T Consensus 211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst-~RvWDiRtr--------------~~V~~l-~ 274 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST-IRVWDIRTR--------------ASVHVL-S 274 (460)
T ss_pred ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcce-EEEeeeccc--------------ceEEEe-c
Confidence 356789999999999999999999999999999999999999999987 899999974 223344 4
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
|++. .|.++.|-|-.-.+.+||.|+||++||+..+.-..++.-|
T Consensus 275 GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 275 GHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred CCCC-cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 5543 4889999887777899999999999999876555555444
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=3.6e-12 Score=130.32 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=100.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC-----------CCc-
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT-----------SSA- 308 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~-----------~s~- 308 (779)
|++...|..|.+||+.+++++..|++|...|++++|+.+...+++||.|.+ +++||-+...+.+ +|.
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s-~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS-VRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred cccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccce-eEEEEcccCCCCccchhhhhcCceeEEE
Confidence 344556788999999999999999999999999999999999999999976 9999977642211 010
Q ss_pred -------cCCCCceeEEEEeecCCC-----cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 309 -------CDAGTSYVHLYRLQRGLT-----NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 309 -------~~~~~s~~~l~~l~rG~t-----~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
++...--...|.++.|.- ..+|++++||+|++.+.+++.|+|+|+.|-.++.-.....+|.+
T Consensus 153 v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 153 VAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred ecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 111111234577766632 24599999999999999999999999999988766666778854
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.44 E-value=2.3e-12 Score=147.59 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=93.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC--CCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG--ILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~--~~g~~s~~~~~~s~~~l~~l 321 (779)
+...|.+.|||+.+...+.+++||.+.|..|+.+||++.++|||.|.+ |++||..-- .+|+.- ..-+.+|..+|
T Consensus 430 G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~l~~~~~gt~~---k~lsl~~~rtL 505 (888)
T KOG0306|consen 430 GTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFKLVVSVPGTQK---KVLSLKHTRTL 505 (888)
T ss_pred eccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEEEEeccCcccc---eeeeeccceEE
Confidence 446789999999999999999999999999999999999999999976 999997532 111100 00011222222
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
.- ...|.|+++||||++||++-.|.||+||-+.+..--+++.+|
T Consensus 506 el---~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH 549 (888)
T KOG0306|consen 506 EL---EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH 549 (888)
T ss_pred ec---cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence 21 234999999999999999999999999999998888899999
No 63
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.43 E-value=2.5e-12 Score=148.69 Aligned_cols=174 Identities=14% Similarity=0.252 Sum_probs=132.5
Q ss_pred CCCEEEEEECCCCcEEEEE----eCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 62 VPTVVHFYSLRSQSYVHML----KFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tL----kf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
+.++|.+|++.+|-..+++ -++.+|.+|++. +.+++.+.++-+..||..+...+.++.-- ++
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-----~~------ 536 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-----SS------ 536 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----CC------
Confidence 4488999999999988888 458899999994 33556689999999999998877776421 10
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
+. .+.|. ..
T Consensus 537 -----~~----~iv~h----------------r~---------------------------------------------- 545 (910)
T KOG1539|consen 537 -----IT----GIVYH----------------RV---------------------------------------------- 545 (910)
T ss_pred -----cc----eeeee----------------eh----------------------------------------------
Confidence 00 00010 00
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
++.++.+..+-.|+|+|..+.++++.|.+|++.|++++|||||+.|++|+.|++ |+
T Consensus 546 -----------------------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir 601 (910)
T KOG1539|consen 546 -----------------------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IR 601 (910)
T ss_pred -----------------------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EE
Confidence 001223345668999999999999999999999999999999999999999998 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINP 358 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~ 358 (779)
+||+.++ ..+--+. ......++.|||.|.|||+...| .-|.+|.=..
T Consensus 602 ~wDlpt~--------------~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 602 TWDLPTG--------------TLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEeccCc--------------ceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 9999986 2333332 23457899999999999999998 6799997543
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=6.3e-12 Score=129.72 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=88.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
..++-||+|++||..-+.-+.+|.+|..-|...+||| .+.++|++|.||+ .++||++.. |. .....
T Consensus 121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~-l~lwdvr~~--gk----------~~~i~ 187 (311)
T KOG0277|consen 121 LTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT-LRLWDVRSP--GK----------FMSIE 187 (311)
T ss_pred EeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce-EEEEEecCC--Cc----------eeEEE
Confidence 3457899999999999999999999999999999999 5889999999998 899998753 11 22222
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCcee-eccC
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVN-FQPT 368 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~-~~~H 368 (779)
. +...|.++.|+. |-..|+||+.|++|++|||....-++. +.+|
T Consensus 188 a----h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 188 A----HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred e----ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 1 235799999998 667789999999999999988765532 3455
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.43 E-value=1.4e-12 Score=144.38 Aligned_cols=114 Identities=16% Similarity=0.333 Sum_probs=86.5
Q ss_pred cccccCCCCeEEEEECCCCc-EEEEec-----cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKN-VIAQFR-----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~-~v~~f~-----aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
.|.+...||+++|||+..-+ .+..|+ +-.-+++..+|+|||+++|+|..||. |.+|+....
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~------------ 349 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR------------ 349 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc------------
Confidence 46677899999999998642 223332 33458899999999999999999997 999997432
Q ss_pred ceeEEEEeecCCCcc-cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 314 SYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 314 s~~~l~~l~rG~t~a-~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.++..+.++..+... .|.||+||+||++|++-+.|++++||||..+......+
T Consensus 350 ~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 350 TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 123333343333332 49999999999999999999999999999887765543
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.42 E-value=6.9e-13 Score=141.99 Aligned_cols=104 Identities=22% Similarity=0.338 Sum_probs=85.9
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
|..++.|-.+..||++.. .++..+++|.++|..+.|||.|+-+++||.|.+ |+||.+..+ ..+.+|
T Consensus 244 F~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~------------~SRdiY 310 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHG------------HSRDIY 310 (433)
T ss_pred eeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCC------------cchhhh
Confidence 566788889999999874 578889999999999999999999999999987 999998765 112334
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
--.|- ..|.++.||.|++||.+||+|+.|++|.-....
T Consensus 311 htkRM---q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 311 HTKRM---QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hHhhh---heeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 33332 248999999999999999999999999986543
No 67
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=1.3e-12 Score=150.18 Aligned_cols=118 Identities=14% Similarity=0.248 Sum_probs=91.6
Q ss_pred ccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
|+++...|.+++||++. .++...|.||.++|.|+.|+|++.+||||+.|+. |+|||...+ ....+.
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~------------~~~~~~ 258 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDS------------RAKPKH 258 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCC------------Ccccee
Confidence 45566789999999986 4678889999999999999999999999999987 999998754 112233
Q ss_pred EeecCCCcccEEEEEEcCCCCE-EEEEeC--CCeEEEEecCCCC-CceeeccCCCCCCc
Q 004015 320 RLQRGLTNAVIQDISFSDDSNW-IMISSS--RGTSHLFAINPLG-GSVNFQPTDANFTT 374 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~-LAtgS~--DGTVhIwdl~~~g-g~~~~~~H~~~~~~ 374 (779)
+.+ |.++|..+.|-|+-++ ||++++ |-.|||||+...- .-.++..|++.+..
T Consensus 259 tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 259 TIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG 314 (839)
T ss_pred EEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc
Confidence 443 3467999999998776 555554 6789999996543 34577888776653
No 68
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.40 E-value=6.9e-13 Score=143.65 Aligned_cols=187 Identities=16% Similarity=0.294 Sum_probs=136.6
Q ss_pred CCEEEEEECCCCcEEEEEeC--CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf--~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++||+|+.. -..|+.++- ...|++++|+ .+++.++.|++|+|||....+....|.+| ++
T Consensus 159 gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH--------------gw 223 (464)
T KOG0284|consen 159 GGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH--------------GW 223 (464)
T ss_pred CceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC--------------CC
Confidence 4789999884 445666653 4789999996 56778899999999999987776666554 11
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.+-+ +++- |+
T Consensus 224 dVks-----vdWH-------------P~---------------------------------------------------- 233 (464)
T KOG0284|consen 224 DVKS-----VDWH-------------PT---------------------------------------------------- 233 (464)
T ss_pred Ccce-----eccC-------------Cc----------------------------------------------------
Confidence 1111 1111 11
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.+.+++++.|..|++||.+++.+++++.+|+..|..++|+|+|.+|+|+|.|. .++|||
T Consensus 234 --------------------kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~D 292 (464)
T KOG0284|consen 234 --------------------KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFD 292 (464)
T ss_pred --------------------cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc-eEEEEe
Confidence 01233445667999999999999999999999999999999999999999996 599999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDAN 371 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~ 371 (779)
++.- ..++.+ ||+. ..|.+++|+| .-.+|.+|+.||.|..|.+-.......+ .+|...
T Consensus 293 iR~m--------------kEl~~~-r~Hk-kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~ 352 (464)
T KOG0284|consen 293 IRTM--------------KELFTY-RGHK-KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGE 352 (464)
T ss_pred hhHh--------------HHHHHh-hcch-hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccc
Confidence 9842 334444 5543 3599999999 4568899999999999999733333333 345443
No 69
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.39 E-value=1.7e-10 Score=120.19 Aligned_cols=222 Identities=12% Similarity=0.134 Sum_probs=130.4
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+.+++.++.+.....+..+.++ ++.++++ .+++|++||+.+.+.+..+..... ..
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------------~~ 118 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE-------------PE 118 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC-------------cc
Confidence 368999999999998888765556777785 5555443 478999999999887777643210 11
Q ss_pred ceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.+++.| ++|+++... +..+..+-....+.+. ....+..
T Consensus 119 ~~~~~~dg~~l~~~~~~--------------------------~~~~~~~d~~~~~~~~--~~~~~~~------------ 158 (300)
T TIGR03866 119 GMAVSPDGKIVVNTSET--------------------------TNMAHFIDTKTYEIVD--NVLVDQR------------ 158 (300)
T ss_pred eEEECCCCCEEEEEecC--------------------------CCeEEEEeCCCCeEEE--EEEcCCC------------
Confidence 234433 455554311 0000000000000000 0000000
Q ss_pred cCCCcCccccccCCCCCCCccCCcc-cccCCCCeEEEEECCCCcEEEEeccCC-----C--CeEEEEEcCCCCEEEEEe-
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHF-PDADNVGMVIVRDIVSKNVIAQFRAHK-----S--PISALCFDPSGILLVTAS- 287 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~-~s~~~dG~V~VwDl~s~~~v~~f~aHt-----~--~IsaLaFSPdG~lLATaS- 287 (779)
+ ..+ ...++ | ..+ +.+..+|.|.+||+.+++.+..+..+. . ....++|+|+|++++.+.
T Consensus 159 -~---~~~-~~s~d----g---~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 159 -P---RFA-EFTAD----G---KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred -c---cEE-EECCC----C---CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 0 000 00011 1 012 334567999999999998877765332 1 234689999999865543
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeec
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+++ |.+||+.++ ..+..+..+ ..+.+++|+|||++|++++ .+|+|+|||+........++
T Consensus 227 ~~~~-i~v~d~~~~--------------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 227 PANR-VAVVDAKTY--------------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCe-EEEEECCCC--------------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 3444 899998764 222222222 2478999999999998874 68999999999876555554
Q ss_pred c
Q 004015 367 P 367 (779)
Q Consensus 367 ~ 367 (779)
.
T Consensus 289 ~ 289 (300)
T TIGR03866 289 V 289 (300)
T ss_pred c
Confidence 3
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.39 E-value=8.6e-12 Score=136.10 Aligned_cols=217 Identities=18% Similarity=0.268 Sum_probs=141.3
Q ss_pred CEEEEEECCCCcEEEEEeCC-CCEEEEEEcCc---EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR-SPIYSVRCSSR---VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~-s~V~sV~~s~r---lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.++-++|-.+++.+.+++.. -.|.++.+++. ++..+.+..|+||...+-.+...+..|..+.. -
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~------------~ 308 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT------------G 308 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce------------e
Confidence 57889999999999999874 46999999743 23346788999999988776666655532211 1
Q ss_pred eee--cCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAV--GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAl--gpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.+ ...||-.++++ .+++-+..+..++|..-.....+..+. +..+-
T Consensus 309 ls~h~tgeYllsAs~d---------------------------~~w~Fsd~~~g~~lt~vs~~~s~v~~t-----s~~fH 356 (506)
T KOG0289|consen 309 LSLHPTGEYLLSASND---------------------------GTWAFSDISSGSQLTVVSDETSDVEYT-----SAAFH 356 (506)
T ss_pred eeeccCCcEEEEecCC---------------------------ceEEEEEccCCcEEEEEeeccccceeE-----EeeEc
Confidence 111 12444444322 111111111222111100000011111 00111
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
| +|.+ |..+..||.|+|||+.+...++.|.+|+++|.+|+|+-+|.+|||+.+|+. |++||
T Consensus 357 p---------------DgLi---fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwD 417 (506)
T KOG0289|consen 357 P---------------DGLI---FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWD 417 (506)
T ss_pred C---------------CceE---EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEE
Confidence 1 2322 456678999999999999999999999999999999999999999999986 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
++.. .....+.+..+ ..|.+++|.+.|+||++++.|=+|++++-.+
T Consensus 418 LRKl------------~n~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 418 LRKL------------KNFKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred ehhh------------cccceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 9864 11122333222 2488999999999999998888888877443
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.2e-12 Score=138.05 Aligned_cols=204 Identities=14% Similarity=0.219 Sum_probs=145.4
Q ss_pred CCEEEEEECCCCcEEEEEeC---------CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEec-CCcccCCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKF---------RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT-NPIVMGHPS 129 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf---------~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t-~p~~~~~p~ 129 (779)
.+-|.+|+..+|+..+.|++ ..+|.+|.|+ ..+||. +.|++|+||.+.|+.|++.+.. |..
T Consensus 234 DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk------ 307 (508)
T KOG0275|consen 234 DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK------ 307 (508)
T ss_pred cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc------
Confidence 47799999999999888873 5789999997 456776 7899999999999999888752 211
Q ss_pred CCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 130 AGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 130 s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
+. .+ |.|+ ++.
T Consensus 308 ------Gv--t~-----l~FS-------------------------------------rD~------------------- 318 (508)
T KOG0275|consen 308 ------GV--TC-----LSFS-------------------------------------RDN------------------- 318 (508)
T ss_pred ------Ce--eE-----EEEc-------------------------------------cCc-------------------
Confidence 00 11 1121 000
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
..+.+++.|-+|+|.-++++++++.|++|++-|+...|++||..+.+||.|
T Consensus 319 -----------------------------SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 319 -----------------------------SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred -----------------------------chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 022345678899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCC----CCCCcc-----------CCC-------CceeEE--------EEeecCCC-cccEEEEEEcCC
Q 004015 290 GHNINIFKIIPGIL----GTSSAC-----------DAG-------TSYVHL--------YRLQRGLT-NAVIQDISFSDD 338 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~----g~~s~~-----------~~~-------~s~~~l--------~~l~rG~t-~a~I~sIaFSpD 338 (779)
|+ |+||+..+... .+.+.. .++ .+...+ ..+..|.. .....+++.||.
T Consensus 370 gt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred cc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCC
Confidence 98 89999876511 000000 000 000001 11111111 112457889999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 339 SNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 339 g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
|.|+.+.+.|+..+.|.+..++-+.++.-|...
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkd 481 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD 481 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeeccccc
Confidence 999999999999999999988777777666543
No 72
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.39 E-value=1.4e-10 Score=120.86 Aligned_cols=176 Identities=15% Similarity=0.191 Sum_probs=122.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEE-EE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVV-AI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlL-aV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|++||+.+++.++++.....+..++++ ++.+ ++ ..++.|++||+.+++.+..+..+..
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------------- 74 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---------------- 74 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC----------------
Confidence 67999999999999999876667888885 4554 44 3568999999999887665532210
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+..+++.. +|..+
T Consensus 75 ----~~~~~~~~---------------------------~g~~l------------------------------------ 87 (300)
T TIGR03866 75 ----PELFALHP---------------------------NGKIL------------------------------------ 87 (300)
T ss_pred ----ccEEEECC---------------------------CCCEE------------------------------------
Confidence 01122220 11111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
++....++.|++||+.+.+.+..+..+ ..+.+++|+|+|++|++++.++..+.+||..
T Consensus 88 ---------------------~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 88 ---------------------YIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred ---------------------EEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 011234578999999998888888643 3468899999999999999887767888976
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 361 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg 361 (779)
.. ..+..+..+ ..+..++|+||+++|++++ .++++++||+.....
T Consensus 146 ~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 146 TY--------------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CC--------------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 54 222222222 2356899999999986554 599999999987543
No 73
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.39 E-value=8.7e-13 Score=140.35 Aligned_cols=218 Identities=12% Similarity=0.179 Sum_probs=143.4
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEE-EEeCCeEEEEeCCCCc---EEEEEecCCcccCCCCCCCcccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVA-ICQAAQVHCFDAATLE---IEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLa-Vs~d~~I~IwD~~T~e---~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
+..||++||..||++++++-+ ...|..++|+..+++ .+-|..|.+||+..-. +.+.|.+|- ..
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr------------Aa 322 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR------------AA 322 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhh------------hh
Confidence 468999999999999999865 678999999866555 5778999999998654 222333331 23
Q ss_pred ccceeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.|.+.++.+++..++.+ +.+|++.. +. .-++|... ..|.
T Consensus 323 VNvVdfd~kyIVsASgDRTikvW~~st------------------~e--------fvRtl~gH-----kRGI-------- 363 (499)
T KOG0281|consen 323 VNVVDFDDKYIVSASGDRTIKVWSTST------------------CE--------FVRTLNGH-----KRGI-------- 363 (499)
T ss_pred eeeeccccceEEEecCCceEEEEeccc------------------ee--------eehhhhcc-----cccc--------
Confidence 45566666666665432 23332110 00 00111100 0000
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
++-.. + ...+++++.|.+|++||+..+.++..+++|..-|.|+.|+. +.+++|.-||+ |+
T Consensus 364 ------------AClQY--r---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGk-ik 423 (499)
T KOG0281|consen 364 ------------ACLQY--R---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGK-IK 423 (499)
T ss_pred ------------eehhc--c---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccce-EE
Confidence 00000 0 11346778899999999999999999999999999999964 78999999998 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|||+..+.. +...+ ...++..+-+ +..+|..+.|. ...+++++.|.||.|||.-.+
T Consensus 424 vWdl~aald-pra~~----~~~Cl~~lv~--hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 424 VWDLQAALD-PRAPA----STLCLRTLVE--HSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEecccccC-Ccccc----cchHHHhhhh--ccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 999987521 10000 1122333322 23468889885 567899999999999999653
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=1.4e-12 Score=147.69 Aligned_cols=189 Identities=15% Similarity=0.277 Sum_probs=142.2
Q ss_pred CCEEEEEECCCCc------EEEEEeC-CCCEEEEEE--cC-cEEEEEeCCeEEEEeCCCC--cEEEEEecCCcccCCCCC
Q 004015 63 PTVVHFYSLRSQS------YVHMLKF-RSPIYSVRC--SS-RVVAICQAAQVHCFDAATL--EIEYAILTNPIVMGHPSA 130 (779)
Q Consensus 63 ~~tVrIWDL~Tge------~V~tLkf-~s~V~sV~~--s~-rlLaVs~d~~I~IwD~~T~--e~l~tl~t~p~~~~~p~s 130 (779)
.+.|++|+..... ++.+++. ...|.++.. ++ .+|.++.|.+|++|++... -|+.+|.+|..-.
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYV----- 120 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYV----- 120 (735)
T ss_pred CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchh-----
Confidence 3789999986532 3555554 456777666 34 5777899999999999977 5777777775421
Q ss_pred CCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 131 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 131 ~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
..|||... +..
T Consensus 121 --------------kcla~~ak--------------------------~~~----------------------------- 131 (735)
T KOG0308|consen 121 --------------KCLAYIAK--------------------------NNE----------------------------- 131 (735)
T ss_pred --------------eeeeeccc--------------------------Cce-----------------------------
Confidence 12455310 000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC--cEE--------EEec-cCCCCeEEEEEcCC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVI--------AQFR-AHKSPISALCFDPS 279 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~--~~v--------~~f~-aHt~~IsaLaFSPd 279 (779)
.++++.-|+.|.|||+.++ +.+ ..+. +|..+|.+|+-++.
T Consensus 132 -----------------------------lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 132 -----------------------------LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred -----------------------------eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 1234456789999999876 222 2333 88899999999999
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 280 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 280 G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|+++++|+..+- +++||-++. ..+.+| ||++. .|.++-.++||+.+.++|+||||++|||...
T Consensus 183 ~t~ivsGgtek~-lr~wDprt~--------------~kimkL-rGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 183 GTIIVSGGTEKD-LRLWDPRTC--------------KKIMKL-RGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred ceEEEecCcccc-eEEeccccc--------------cceeee-ecccc-ceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 999999999975 999998764 556777 48765 4999999999999999999999999999999
Q ss_pred CCceeeccCCCC
Q 004015 360 GGSVNFQPTDAN 371 (779)
Q Consensus 360 gg~~~~~~H~~~ 371 (779)
.+..++..|...
T Consensus 246 rCl~T~~vH~e~ 257 (735)
T KOG0308|consen 246 RCLATYIVHKEG 257 (735)
T ss_pred ceeeeEEeccCc
Confidence 999999988764
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.37 E-value=5e-12 Score=137.25 Aligned_cols=174 Identities=16% Similarity=0.243 Sum_probs=130.0
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
...+||+||+..+.|.+++-+.+.+.+|.++...++.+ +|++|++||+++..+.+.+..... +..+
T Consensus 281 ~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~-------------vtSl 347 (459)
T KOG0288|consen 281 ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR-------------VTSL 347 (459)
T ss_pred ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc-------------eeeE
Confidence 46899999999999999999999999999985555543 789999999999888777743210 0001
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
.++ + +|.
T Consensus 348 ~ls--------------------~--------------~g~--------------------------------------- 354 (459)
T KOG0288|consen 348 DLS--------------------M--------------DGL--------------------------------------- 354 (459)
T ss_pred eec--------------------c--------------CCe---------------------------------------
Confidence 000 0 000
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC----CCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK----SPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt----~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.+.+...|.++.+.|+++.+....|.|-. ..++.+.|||+|.|+|+||.||. |+||
T Consensus 355 -------------------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW 414 (459)
T KOG0288|consen 355 -------------------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIW 414 (459)
T ss_pred -------------------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEE
Confidence 01112345678899999998888877542 35899999999999999999997 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
++.++ .....+.....++.|.+++|+|-|.++++++.++.+.+|.
T Consensus 415 ~v~tg--------------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 415 SVFTG--------------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EccCc--------------eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99886 3333443333333599999999999999999999999994
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.37 E-value=4e-12 Score=150.80 Aligned_cols=122 Identities=12% Similarity=0.213 Sum_probs=93.5
Q ss_pred CCCeEEEEECCC------------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCC--
Q 004015 246 NVGMVIVRDIVS------------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA-- 311 (779)
Q Consensus 246 ~dG~V~VwDl~s------------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~-- 311 (779)
.||.++||.... .+.+.++..|.+.|+|+.|+|||++||+||+|+. |.||+-.+. +....++.
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~-v~iW~~~~~--~~~~~fgs~g 111 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL-VMIWERAEI--GSGTVFGSTG 111 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce-EEEeeeccc--CCcccccccc
Confidence 567778998753 3467888999999999999999999999999964 899998751 11111111
Q ss_pred ---CCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 312 ---GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 312 ---~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
+...+..+...||+ ...|++++||||+.|||++|.|++|+||+..+++....+++|...
T Consensus 112 ~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 112 GAKNVESWKVVSILRGH-DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL 173 (942)
T ss_pred cccccceeeEEEEEecC-CCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc
Confidence 11222233334674 457999999999999999999999999999999877888999854
No 77
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.37 E-value=8.2e-12 Score=143.17 Aligned_cols=176 Identities=14% Similarity=0.215 Sum_probs=138.8
Q ss_pred CCCEEEEEECCC-----CcE--------EEEEeCCCCEEEEEEc--CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCccc
Q 004015 62 VPTVVHFYSLRS-----QSY--------VHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVM 125 (779)
Q Consensus 62 ~~~tVrIWDL~T-----ge~--------V~tLkf~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~ 125 (779)
..++|+|||.+- |.. -++|++...|.+|+++ +++|||+ ++++|+||=+.|++...+|-+|..|.
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 358999999752 211 2567788999999998 8999996 68999999999999888887775432
Q ss_pred CCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc
Q 004015 126 GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 205 (779)
Q Consensus 126 ~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~ 205 (779)
.| |.+ +| +++
T Consensus 554 ~s------------mDI-----S~-----------------------------DSk------------------------ 563 (888)
T KOG0306|consen 554 LS------------MDI-----SP-----------------------------DSK------------------------ 563 (888)
T ss_pred eE------------Eec-----cC-----------------------------CcC------------------------
Confidence 11 111 01 000
Q ss_pred ccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEE
Q 004015 206 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVT 285 (779)
Q Consensus 206 ~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLAT 285 (779)
.+++++.|..|+||-++=|.|-+.|-||..+|.++.|-|+..++.|
T Consensus 564 ----------------------------------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 564 ----------------------------------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred ----------------------------------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence 1234456788999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 286 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 286 aS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
|+.||. |+-||-... .++.+|. |++ ..|++++-+|+|.|++++|.|.+|++|.-..
T Consensus 610 ~gKD~k-vKqWDg~kF--------------e~iq~L~-~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 610 CGKDGK-VKQWDGEKF--------------EEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ecCcce-EEeechhhh--------------hhheeec-cch-heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999987 999997653 5566664 433 4699999999999999999999999998765
No 78
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.8e-11 Score=138.11 Aligned_cols=209 Identities=16% Similarity=0.206 Sum_probs=142.9
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCC-CcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
-.||||+..|++.|+++.- +.-|++|+.. +-+|..+.|-.|++||... ..|.+++++|..-. -
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyV------------M 144 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYV------------M 144 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEE------------E
Confidence 4699999999999999985 6779999985 4456667888999999985 47889998885321 1
Q ss_pred ceeecC---ceeEeeCC--CceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 139 PLAVGP---RWLAYSGS--PVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 139 piAlgp---RwLAyas~--~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
.+++.| .-+|.++- .+.+|..|.-.|. + +|-. .+.|...+. |+
T Consensus 145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-f-------------------------Tl~g-----HekGVN~Vd-yy 192 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-F-------------------------TLEG-----HEKGVNCVD-YY 192 (794)
T ss_pred EEEecCCCccceeeeeccccEEEEEcCCCCCc-e-------------------------eeec-----cccCcceEE-ec
Confidence 233333 22333321 2334433321110 0 0000 001111110 00
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
+ .+. +..++++..|-.|+|||.+++.|++++.+|+..|++++|.|.=.+++|||.||+ +
T Consensus 193 ----~----------~gd------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-v 251 (794)
T KOG0276|consen 193 ----T----------GGD------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-V 251 (794)
T ss_pred ----c----------CCC------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-E
Confidence 0 011 124567888999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
|||...+. +....|..|. .+|+||+-.++++.+|+|.+.|.|.|
T Consensus 252 riWhs~Ty--------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 252 RIWNSKTY--------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCcce--------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99997764 2222333333 35999999999999999999987765
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.34 E-value=1.5e-11 Score=134.80 Aligned_cols=114 Identities=14% Similarity=0.278 Sum_probs=86.6
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCC-ccCCCCceeE
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSS-ACDAGTSYVH 317 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s-~~~~~~s~~~ 317 (779)
+++++.|++|.+||+++. +++.+|.+|...|.+|.|||. -+.||+++.|++ ++|||+..- ...++ .....+....
T Consensus 288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i-g~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI-GEEQSPEDAEDGPPEL 365 (422)
T ss_pred EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc-ccccChhhhccCCcce
Confidence 345567899999999974 588999999999999999996 679999999998 899998753 11111 1111122333
Q ss_pred EEEeecCCCcccEEEEEEcCCCCE-EEEEeCCCeEEEEecCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINP 358 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~ 358 (779)
++ .++|++ ++|.+++|.|.-.| |++.+.|+.++||+...
T Consensus 366 lF-~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 366 LF-IHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eE-EecCcc-cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 33 467865 56999999999888 56678899999999864
No 80
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.34 E-value=3.5e-12 Score=138.30 Aligned_cols=117 Identities=15% Similarity=0.325 Sum_probs=100.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.|++.+.||+|+|||+...+.-..+.+|.-.|.++.|.|.-.+||+||.|. .|++||.+++ .++.
T Consensus 194 kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg--------------~cl~ 258 (464)
T KOG0284|consen 194 KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSG--------------SCLA 258 (464)
T ss_pred eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCc--------------chhh
Confidence 467788999999999999888888999999999999999999999999996 6999999876 3455
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
+++. + ...|..+.|+|++.||+++|.|.++++|||..-....++++|.....
T Consensus 259 tlh~-H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 259 TLHG-H-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred hhhh-c-cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 5542 2 23499999999999999999999999999998778888999965444
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.33 E-value=7.8e-11 Score=122.45 Aligned_cols=188 Identities=16% Similarity=0.224 Sum_probs=138.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.++.+|-...|+.+-+++. .+.|.++..+ +++|..+.|.++++||..|++++.++.+-..+
T Consensus 32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~V--------------- 96 (327)
T KOG0643|consen 32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPV--------------- 96 (327)
T ss_pred CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCee---------------
Confidence 5678998889999999985 6788888884 55666689999999999999999999763110
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
|-+-|.. +|.++.. ..+ +
T Consensus 97 -----k~~~F~~---------------------------~gn~~l~-~tD--~--------------------------- 114 (327)
T KOG0643|consen 97 -----KRVDFSF---------------------------GGNLILA-STD--K--------------------------- 114 (327)
T ss_pred -----EEEeecc---------------------------CCcEEEE-Eeh--h---------------------------
Confidence 0011110 1111100 000 0
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECC-------CCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHN 292 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~-------s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~ 292 (779)
. -...+.|.++|++ +.+++..+..+.+.|+.+-|+|-|++|++|..||.
T Consensus 115 -------------~----------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~- 170 (327)
T KOG0643|consen 115 -------------Q----------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS- 170 (327)
T ss_pred -------------h----------cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-
Confidence 0 0133567777777 56778888999999999999999999999999998
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|.+||+.++ ..+..-.+- +.+.|.+|+||+|..+++++|.|.|.++||+.+...+-++.+
T Consensus 171 is~~da~~g--------------~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 171 ISIYDARTG--------------KELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred EEEEEcccC--------------ceeeechhh-hccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 999999986 222222222 234699999999999999999999999999998877666655
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.33 E-value=1.7e-11 Score=126.26 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=138.5
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcE-EEEEecCCcccCCCCCCCccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEI-EYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~-l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..-+-++||.-||..++++.++.-|.+++|+ .++|..+.++-++|||+...+- ...+..|+.- +.-
T Consensus 79 adftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~----------Ir~ 148 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG----------IRT 148 (334)
T ss_pred ccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc----------cee
Confidence 3567899999999999999999999999996 4566668888899999986542 1222222110 000
Q ss_pred cceeec-CceeEeeCC-CceecC--CCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 138 GPLAVG-PRWLAYSGS-PVVVSN--DGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 138 ~piAlg-pRwLAyas~-~~i~~~--sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
--...+ -..|..+.. .+..|+ +|. .+.+ +
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt--------------------~v~s---------------------------L 181 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGT--------------------EVQS---------------------------L 181 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCc--------------------EEEE---------------------------E
Confidence 000000 012333322 233342 110 0000 0
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
. ++....+.... . .+.+++....+.|..||..+..+++.++.. ..|.+...+|+-..++.|..|+. +
T Consensus 182 ~--~~s~VtSlEvs-~--------dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~-~ 248 (334)
T KOG0278|consen 182 E--FNSPVTSLEVS-Q--------DGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFK-V 248 (334)
T ss_pred e--cCCCCcceeec-c--------CCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceE-E
Confidence 0 00000111100 0 123455566789999999999999988754 36888999999999999999987 7
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+.||..++ ..+-.+..|+. ..|.|+.|||||...|+||.||||+||...+..
T Consensus 249 ~kfDy~Tg--------------eEi~~~nkgh~-gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 249 YKFDYNTG--------------EEIGSYNKGHF-GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEeccCC--------------ceeeecccCCC-CceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 89998886 22222235543 469999999999999999999999999997753
No 83
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.32 E-value=4.5e-11 Score=128.86 Aligned_cols=101 Identities=15% Similarity=0.280 Sum_probs=82.2
Q ss_pred cccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.++.|..+++||-+++ -+..+|.+|++-|++++++|... +|+++|.|++ +++||++.. .-.
T Consensus 316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~-------------k~p 381 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST-------------KAP 381 (423)
T ss_pred eecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC-------------CCc
Confidence 34556778999999875 35678999999999999999655 7899999998 899999864 125
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
||.+.+. .-+|.++.|+. +..|++|+.|.+++||.-.+.
T Consensus 382 lydI~~h--~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 382 LYDIAGH--NDKVLSVDWNE-GGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred ceeeccC--CceEEEEeccC-CceEEeccCcceEEEeccccc
Confidence 7888664 35699999985 678999999999999987654
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.31 E-value=7.9e-11 Score=122.10 Aligned_cols=161 Identities=15% Similarity=0.222 Sum_probs=127.0
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEE-EEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVV-AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlL-aVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
..|.+.|.++.+.+++.+|+..+..+.++ +.++ +...-+.|.|..--.++.+++|..||. .| -+|
T Consensus 128 D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s--nC----------icI 195 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS--NC----------ICI 195 (313)
T ss_pred ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc--ce----------EEE
Confidence 67999999999999999999999999995 4444 445558999999999999999998863 11 123
Q ss_pred eecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 141 AVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 141 Algp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.++| |++|.
T Consensus 196 ~f~p~GryfA~--------------------------------------------------------------------- 206 (313)
T KOG1407|consen 196 EFDPDGRYFAT--------------------------------------------------------------------- 206 (313)
T ss_pred EECCCCceEee---------------------------------------------------------------------
Confidence 3332 33333
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
+..|..|.+||+...-+++.|..|.-||..|.||.||++||+||+| +.|-|=++
T Consensus 207 -------------------------GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED-h~IDIA~v 260 (313)
T KOG1407|consen 207 -------------------------GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED-HFIDIAEV 260 (313)
T ss_pred -------------------------ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc-ceEEeEec
Confidence 3345568899999999999999999999999999999999999999 55877777
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
.+| ..++..+ +.+....+||.|....||.+.+|
T Consensus 261 etG--------------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 261 ETG--------------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccC--------------CeEEEee---ccCCceeEEecCCCceeeEEecC
Confidence 776 3444543 23456899999999999998876
No 85
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.9e-12 Score=147.82 Aligned_cols=182 Identities=15% Similarity=0.270 Sum_probs=136.3
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.+.+|....-..+..|.. .++|.+|.|+ .++|+. +.+++|++||+.+.+.+++|.+|... +
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------------~ 115 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------------I 115 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--------------c
Confidence 6677888876666777665 7899999996 566665 67789999999999999999776321 1
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+.| +|. | +|.
T Consensus 116 ~sv-----~f~-------------P--------------~~~-------------------------------------- 125 (825)
T KOG0267|consen 116 TSV-----DFH-------------P--------------YGE-------------------------------------- 125 (825)
T ss_pred cee-----eec-------------c--------------ceE--------------------------------------
Confidence 111 111 0 000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.+..|+.+.+||++...|...+.+|..-|.+++|+|+|++++.+.+|-+ ++|||+.
T Consensus 126 --------------------~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~ 184 (825)
T KOG0267|consen 126 --------------------FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLT 184 (825)
T ss_pred --------------------EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce-eeeeccc
Confidence 1123355678999999999999999999999999999999999999999865 9999987
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+ ..+..|. + +..+|+.+.|.|-.-.++.||.|+|+++||++++.-.....
T Consensus 185 ag--------------k~~~ef~-~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 185 AG--------------KLSKEFK-S-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred cc--------------ccccccc-c-ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 65 2222332 1 12458899999999999999999999999999764433333
No 86
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.31 E-value=7.9e-11 Score=126.55 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=82.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++.+.-||+|.|||+...++ ++.-.|..+|..|.|-+ -.+|+||+.+|+ |++||.+++ ..+++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG--------------~l~~~ 363 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDARTG--------------QLKFT 363 (399)
T ss_pred hhcccccceEEEEecccchh-heeccCCCceEEEEEcC-cchheeeccCce-EEeeecccc--------------ceEEE
Confidence 34566789999999998764 55567999999999999 778999999997 999999987 34444
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+ +|+. ..|++++.+||.++++++|.|++.+||++.
T Consensus 364 y-~GH~-~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 364 Y-TGHQ-MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred E-ecCc-hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 3 5754 459999999999999999999999999874
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=2.7e-11 Score=140.83 Aligned_cols=111 Identities=17% Similarity=0.314 Sum_probs=91.8
Q ss_pred CCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 238 NGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 238 ~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++.+.+++-|.+|++|++....+++.|. |..-|+|++|+| |-+|+++||.||+ ++||+|... .+.
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~------------~Vv 445 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK------------KVV 445 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecCcC------------eeE
Confidence 3466788899999999999999999995 999999999999 8899999999998 899999864 222
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.-+.++ --|+.+||+|||++.++|+.+|.|++|+.....-...++.
T Consensus 446 ~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 446 DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 222222 2399999999999999999999999999977654444443
No 88
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.30 E-value=7.2e-11 Score=127.23 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=85.4
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
-|++.+-||.|+|||++++ .++.+ ++|.+.|+.|.|+..-.+||+|++||+ ++|||++....+. ..
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~---------pV 340 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQ---------PV 340 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccCCC---------cc
Confidence 4567788999999999987 45544 899999999999999889999999998 8999999862221 12
Q ss_pred EEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..++.++ +.|++|.|+| +...||+++.|..|.||||.-.
T Consensus 341 A~fk~Hk----~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 341 ATFKYHK----APITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeEEecc----CCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 3344443 4699999998 5678999999999999999754
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.30 E-value=1.8e-11 Score=128.98 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=86.5
Q ss_pred CeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f---~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
-++++||+.+.++...- ..|++.|+++.+|+.|++.+|||.||. |+|||--.. +++.++.+.
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~--------------rCv~t~~~A 302 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSN--------------RCVRTIGNA 302 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccH--------------HHHHHHHhh
Confidence 47899999988765443 279999999999999999999999998 999995432 455566566
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
+..+.|.+..|+.+|+||.+++.|.++++|.|.++.......
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 666779999999999999999999999999999876655543
No 90
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.30 E-value=6e-11 Score=124.88 Aligned_cols=171 Identities=15% Similarity=0.243 Sum_probs=133.0
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.+++|+||+++.+.++++.-+.++.+|.|+ .+++..+-++.|++||++..+.++++.+|..+.. -
T Consensus 154 D~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt------------~ 221 (338)
T KOG0265|consen 154 DGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTIT------------G 221 (338)
T ss_pred CceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCcee------------e
Confidence 589999999999999999889999999995 6778888999999999999999999998844210 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
|+++ | +|+.
T Consensus 222 lsls--------------------~--------------~gs~------------------------------------- 230 (338)
T KOG0265|consen 222 LSLS--------------------R--------------YGSF------------------------------------- 230 (338)
T ss_pred EEec--------------------c--------------CCCc-------------------------------------
Confidence 1110 0 1111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC----CcEEEEeccCCC----CeEEEEEcCCCCEEEEEeCCCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS----KNVIAQFRAHKS----PISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s----~~~v~~f~aHt~----~IsaLaFSPdG~lLATaS~DGt 291 (779)
+.+-.-|.+|++||++- .+++..|.+|.. .....+|||+++.+..+|.|..
T Consensus 231 ---------------------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~ 289 (338)
T KOG0265|consen 231 ---------------------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF 289 (338)
T ss_pred ---------------------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce
Confidence 11123467899999984 457888987753 3445789999999999999976
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
+.|||...- ..+|.| .|+. ..|.+++|.|.-.+|.++++|+||.+=
T Consensus 290 -vyvwd~~~r--------------~~lykl-pGh~-gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 290 -VYVWDTTSR--------------RILYKL-PGHY-GSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred -EEEeecccc--------------cEEEEc-CCcc-eeEEEeeecCCCcEEEEeccCceeEee
Confidence 899997642 568888 4543 359999999999999999999999873
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.30 E-value=4.2e-10 Score=130.65 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=90.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC------CCCCc-----
Q 004015 243 DADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL------GTSSA----- 308 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f---~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~------g~~s~----- 308 (779)
-+...|+|-+|+++++-....| ++|.++|+.|+.+--+++++||+.+|. ++.||...... +.+..
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~h 543 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYH 543 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeee
Confidence 3456799999999999988899 699999999999999999999999997 89999876531 11100
Q ss_pred --cC-----CCCceeEEEEe--------ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 309 --CD-----AGTSYVHLYRL--------QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 309 --~~-----~~~s~~~l~~l--------~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
++ -..-.-.++.. .+|++ .+|++++|||||+||++++.|+||++||+-+....-.+
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhHHhhccc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 00 00000111211 14543 56999999999999999999999999999876544343
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.9e-10 Score=120.52 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=135.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEe--CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~--d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.+|+|||..+|.+++++.. +--|.-++|. ..++..+. +.+|+..++.+.+.++.+.+|....
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V------------ 103 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRV------------ 103 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceE------------
Confidence 5799999999999999986 4567777773 44555554 7799999999999999998874321
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.++++ |
T Consensus 104 ~sL~~s--------------------P----------------------------------------------------- 110 (311)
T KOG1446|consen 104 NSLSVS--------------------P----------------------------------------------------- 110 (311)
T ss_pred EEEEec--------------------C-----------------------------------------------------
Confidence 111110 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
. ...|.+++.|.+|++||++..++.-.+..-..+| .+|+|+|-++|+|.... .|+|||
T Consensus 111 ------------~-------~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~-~IkLyD 168 (311)
T KOG1446|consen 111 ------------K-------DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSE-LIKLYD 168 (311)
T ss_pred ------------C-------CCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCC-eEEEEE
Confidence 0 0124566788999999999888877665444444 78999999999998876 599999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
++..-.|+ -..+.+..+ ..+++..|.|||||+++..++..+-++|.|-=++.-..+|..|
T Consensus 169 ~Rs~dkgP----------F~tf~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 169 LRSFDKGP----------FTTFSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred ecccCCCC----------ceeEccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 98652222 112233222 2456899999999999999999999999998666555555555
No 93
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=3.4e-10 Score=117.95 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=87.9
Q ss_pred cCCCCeEEEEECCC--CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVRDIVS--KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~VwDl~s--~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++.|.++.||.-.. .+++.++++|...|-|++||++|.||||+|.|+. +-||.+... ..+..+-.|
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS-VWiWe~ded-----------dEfec~aVL 146 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS-VWIWEIDED-----------DEFECIAVL 146 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe-EEEEEecCC-----------CcEEEEeee
Confidence 34566777776543 4789999999999999999999999999999965 899998743 134555555
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC---CCceeeccCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL---GGSVNFQPTDA 370 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~---gg~~~~~~H~~ 370 (779)
+ +++ ..|.-+.|.|.-..|+++|.|.||++|+-.+. ....++.+|++
T Consensus 147 ~-~Ht-qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~ 196 (312)
T KOG0645|consen 147 Q-EHT-QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN 196 (312)
T ss_pred c-ccc-ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc
Confidence 3 333 34888999999999999999999999998752 23566778854
No 94
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.28 E-value=2.5e-11 Score=134.03 Aligned_cols=189 Identities=23% Similarity=0.353 Sum_probs=137.5
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+||||+..-+.+.++ +.+.|..|.+| ..+|| |+..+.|.|..+.|...-.++.. ++ +
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-~s--------------g 164 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-DS--------------G 164 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-CC--------------C
Confidence 3789999999766666666 46899999996 56666 57888999999998775544421 10 0
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
-. -|.|-|...+ |.
T Consensus 165 qs---vRll~ys~sk--------------------------------------r~------------------------- 178 (673)
T KOG4378|consen 165 QS---VRLLRYSPSK--------------------------------------RF------------------------- 178 (673)
T ss_pred Ce---EEEeeccccc--------------------------------------ce-------------------------
Confidence 00 1455554210 00
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS-GILLVTASVQGHNINIF 296 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vw 296 (779)
++..+..+|.|.+||+....++.++. +|..|...|||+|. ..+||+.+-|.+ |.+|
T Consensus 179 ---------------------lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~y 236 (673)
T KOG4378|consen 179 ---------------------LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIY 236 (673)
T ss_pred ---------------------eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEe
Confidence 12234578999999999999888765 99999999999996 558899999976 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDAN 371 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~ 371 (779)
|+... .....+- ..++...++|+++|.+|++|+++|.+.-||+.....++.+ ..|...
T Consensus 237 D~~s~--------------~s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 237 DIRSQ--------------ASTDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred ecccc--------------cccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 98753 1111111 1345789999999999999999999999999988877766 466544
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=4.8e-11 Score=125.99 Aligned_cols=166 Identities=20% Similarity=0.330 Sum_probs=116.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
..+|+|||.+....+-++.-...|+++..++..|+| +.+.+|.+||++++...++..+.+..+..
T Consensus 115 D~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt-------------- 180 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT-------------- 180 (323)
T ss_pred CccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEE--------------
Confidence 478999999987777777777799999998777766 78899999999999877766654322211
Q ss_pred ecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCc
Q 004015 142 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 221 (779)
Q Consensus 142 lgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~ 221 (779)
|.++.-.+. +
T Consensus 181 ---R~v~~~pn~--------------------------e----------------------------------------- 190 (323)
T KOG1036|consen 181 ---RCVALVPNG--------------------------E----------------------------------------- 190 (323)
T ss_pred ---EEEEEecCC--------------------------C-----------------------------------------
Confidence 222221100 0
Q ss_pred CccccccCCCCCCCccCCcccccCCCCeEEEEECCCC----cEEEEeccCC---------CCeEEEEEcCCCCEEEEEeC
Q 004015 222 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----NVIAQFRAHK---------SPISALCFDPSGILLVTASV 288 (779)
Q Consensus 222 ~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~----~~v~~f~aHt---------~~IsaLaFSPdG~lLATaS~ 288 (779)
| ++.++-+|.|.|-+++.. +.-..|++|. .||++|+|+|--..||||+.
T Consensus 191 -------------G-----y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 191 -------------G-----YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred -------------c-----eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence 0 011123444544444333 2334566664 28999999999889999999
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 289 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 289 DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
||. |.+||+.+- +.++.|++- ...|-+++|+.||..||++++
T Consensus 253 DG~-V~~Wd~~~r--------------Krl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DGI-VNIWDLFNR--------------KRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred Cce-EEEccCcch--------------hhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 996 999998864 456666553 224899999999999999986
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=6.3e-11 Score=134.43 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=89.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+.+...+.+++||-++.+.+..+++|+..|.+|-.++||+.+++||.||+ |++||+... +++.++
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ--------------rCl~T~ 251 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ--------------RCLATY 251 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc--------------ceeeeE
Confidence 44566789999999999999999999999999999999999999999998 999999753 445554
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.- +.. .|+++.-+|+=++|.+|+.||.|..=|+..+.....+
T Consensus 252 ~v-H~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 252 IV-HKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred Ee-ccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 32 222 2999999999999999999999999999887444433
No 97
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.26 E-value=8.7e-11 Score=124.67 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=88.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
....+-||.-..++++..+-+|.+-|+-|+|-+||..|.+|+..--.|..||++.. ...+|.|.|..
T Consensus 228 Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~-------------~~pv~~L~rhv 294 (406)
T KOG2919|consen 228 YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS-------------RDPVYALERHV 294 (406)
T ss_pred ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc-------------cchhhhhhhhc
Confidence 33456677777888999999999999999999999999999986667999999874 35577776643
Q ss_pred --CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCCCC
Q 004015 326 --TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 373 (779)
Q Consensus 326 --t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 373 (779)
|+.+| -....|+|+|||+|+.||.|++||+..++..+.. ..|.+...
T Consensus 295 ~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 295 GDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred cCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence 34334 2455899999999999999999999998875544 44544333
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.26 E-value=1.3e-10 Score=127.91 Aligned_cols=203 Identities=19% Similarity=0.305 Sum_probs=136.6
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|.|||..|.+.++.++. +..|.+++|. .++++++.|..|++|++..+..+.++-+|+... +++..
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v---------~~Ida 294 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV---------LGIDA 294 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce---------eeech
Confidence 6699999999999999875 7899999993 678999999999999999998888887775321 01111
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
++. -|.+-.++.+ +++..|-.....+ ++..|.
T Consensus 295 L~r-eR~vtVGgrD---------------------------rT~rlwKi~eesq----lifrg~---------------- 326 (479)
T KOG0299|consen 295 LSR-ERCVTVGGRD---------------------------RTVRLWKIPEESQ----LIFRGG---------------- 326 (479)
T ss_pred hcc-cceEEecccc---------------------------ceeEEEeccccce----eeeeCC----------------
Confidence 110 0222222111 1111111100000 011111
Q ss_pred CcCccccccCCCCCCCcc-CCcccccCCCCeEEEEECCCCcEEEEec-cCC---C--------CeEEEEEcCCCCEEEEE
Q 004015 220 SQNSLQSAIPGGKSNGTV-NGHFPDADNVGMVIVRDIVSKNVIAQFR-AHK---S--------PISALCFDPSGILLVTA 286 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v-~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt---~--------~IsaLaFSPdG~lLATa 286 (779)
.+++..+. .+ ..||++++.+|.|.+|++..++++.+.+ ||. . .|++|+.-|...++|+|
T Consensus 327 -~~sidcv~-------~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG 398 (479)
T KOG0299|consen 327 -EGSIDCVA-------FINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG 398 (479)
T ss_pred -CCCeeeEE-------EecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEec
Confidence 11222111 11 2378899999999999999999998876 663 2 68999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg 345 (779)
|.+|- |++|.+.++. .....++.+. -...|.+|+|+++|++|.+|
T Consensus 399 S~~G~-vrLW~i~~g~----------r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 399 SWSGC-VRLWKIEDGL----------RAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CCCCc-eEEEEecCCc----------cccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 99997 9999998761 1234555553 12359999999999988777
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=4e-10 Score=132.06 Aligned_cols=190 Identities=17% Similarity=0.310 Sum_probs=133.2
Q ss_pred CEEEEEECCCC-cEEEEEe-CCCCEEEEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQ-SYVHMLK-FRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tg-e~V~tLk-f~s~V~sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
+.|++|+.-+- +.-.+|. ....|+++++. .++++.+.+++|.+|....++.--.|. ++
T Consensus 35 g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~-------------------Rf 95 (933)
T KOG1274|consen 35 GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA-------------------RF 95 (933)
T ss_pred CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceee-------------------ee
Confidence 45999988776 6666776 67889999995 567777889999999988776432221 12
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
++--|.+||.. +|..+
T Consensus 96 tlp~r~~~v~g---------------------------~g~~i------------------------------------- 111 (933)
T KOG1274|consen 96 TLPIRDLAVSG---------------------------SGKMI------------------------------------- 111 (933)
T ss_pred eccceEEEEec---------------------------CCcEE-------------------------------------
Confidence 22224455542 12211
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
+.++.|-.|+|-++.......++++|+.+|.+|.|+|.|.+||+++.||+ ++|||+..
T Consensus 112 ---------------------aagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-v~iw~~~~ 169 (933)
T KOG1274|consen 112 ---------------------AAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-VQIWDLQD 169 (933)
T ss_pred ---------------------EeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-EEEEEccc
Confidence 11234556888888888888999999999999999999999999999998 89999987
Q ss_pred CCC-------------C-CCCc----cCC------------------CCceeEEEEeecCCCcccEEEEEEcCCCCEEEE
Q 004015 301 GIL-------------G-TSSA----CDA------------------GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI 344 (779)
Q Consensus 301 ~~~-------------g-~~s~----~~~------------------~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAt 344 (779)
+.. . +... -.+ .....++++|+-......+.++.|||.|+|||+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 511 0 0000 000 011133445533333445889999999999999
Q ss_pred EeCCCeEEEEecCC
Q 004015 345 SSSRGTSHLFAINP 358 (779)
Q Consensus 345 gS~DGTVhIwdl~~ 358 (779)
++.||-|.|||+.+
T Consensus 250 s~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 250 STLDGQILVWNVDT 263 (933)
T ss_pred eccCCcEEEEeccc
Confidence 99999999999984
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.24 E-value=2.2e-10 Score=120.39 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=83.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee-c
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-R 323 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~-r 323 (779)
.+-.|++.|+.++..-.++.+|++.|.++.|+|... .|||||.||+ |++||++.. .|+-..-+.- ..+....++ +
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-sgcf~~lD~h-n~k~~p~~~~n 242 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-SGCFRVLDQH-NTKRPPILKTN 242 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-cceeEEeecc-cCccCcccccc
Confidence 445799999999999999999999999999999877 6899999998 899999863 1110000000 001111111 2
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
-.+..+|..+||+.|++++++.+.|..+++|....+
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 223456999999999999999999999999999764
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.2e-09 Score=111.37 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=133.2
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEE-EcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVR-CSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~-~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.|.|.+-|..+|+-.+.+.. .+.|.++- ||+-+++. ++|++|++||++-..++.++.+.-.- + ++..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-------~-gles-- 231 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-------G-GLES-- 231 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccC-------C-Cccc--
Confidence 38899999999999999875 56788764 47777776 78999999999988888887542100 0 0100
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+-|+.+|.+.+-
T Consensus 232 -----------------------------------------savaav~vdpsg--------------------------- 243 (350)
T KOG0641|consen 232 -----------------------------------------SAVAAVAVDPSG--------------------------- 243 (350)
T ss_pred -----------------------------------------ceeEEEEECCCc---------------------------
Confidence 111112211100
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
..++++..|....+||++.+++++.|..|+..|.|+.|||...||+|+|-|-. |++-|+.
T Consensus 244 -------------------rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlq 303 (350)
T KOG0641|consen 244 -------------------RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQ 303 (350)
T ss_pred -------------------ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecc
Confidence 02234556678899999999999999999999999999999999999999965 9999986
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
-.. .+.|-.+--+.+..++..+.|.|..--|+++|.|.|+.+|.++
T Consensus 304 gdl------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 GDL------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cch------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 431 1122222223333456678999998889999999999999885
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.7e-10 Score=122.16 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=85.9
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+.+++.+-.|.|||++ ++.+.++..-...-...+.||+|++||+++.--. ++||.+--+..|+ ..++...+
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f~kdG~------fqev~rvf 272 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIFTKDGT------FQEVKRVF 272 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEeccCcc------hhhhhhhh
Confidence 34567778899999999 8888888877777778899999999999988755 8999875431222 12345566
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.| .|+.. -|..+|||++++.+++.|.||+.+|||+.-
T Consensus 273 ~L-kGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 273 SL-KGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ee-ccchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 66 46544 499999999999999999999999999853
No 103
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.2e-09 Score=120.44 Aligned_cols=245 Identities=13% Similarity=0.160 Sum_probs=143.0
Q ss_pred CEEEEEECCCCcEEE-EEeCCCCEEEEEEc--CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVH-MLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~-tLkf~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|.+|.+.....++ .+..+++|.++..+ +.+|+.+ -.++||+|.+.|++.+..+..|--...| -.
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITc----------L~ 130 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITC----------LK 130 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeE----------EE
Confidence 367788876555544 34457889999985 6777766 8899999999999998888665211100 01
Q ss_pred eeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.-...+|-.++++ +++|..-. .+++ +.. ...+-+..+.+.... ++ +
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~----------lv~a-------------~~~-~~~~p~~~f~~Htls-IT----D-- 179 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTD----------LVSA-------------DND-HSVKPLHIFSDHTLS-IT----D-- 179 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEe----------eccc-------------ccC-CCccceeeeccCcce-eE----E--
Confidence 11111222233222 11221000 0000 000 000011111111100 00 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
+.. ..|-.++.+++.+.|.++++||+..+.++.++. ...+|.+++.+|-++.+..|..+|. |-+.+
T Consensus 180 ------l~i------g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~-I~~~~ 245 (476)
T KOG0646|consen 180 ------LQI------GSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGK-IFQNL 245 (476)
T ss_pred ------EEe------cCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcce-EEeee
Confidence 000 112235567788999999999999999888765 3468999999999999999999996 77777
Q ss_pred CCCCCCCCCC-ccCC--CCceeEEEEeecCCCc-ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 298 IIPGILGTSS-ACDA--GTSYVHLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 298 i~~~~~g~~s-~~~~--~~s~~~l~~l~rG~t~-a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+... ++.+. .-.. -.....+..+ .|+.. ..|+|++.|-||..|++|+.||+|.|||+.......++
T Consensus 246 ~~~~-~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 246 LFKL-SGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred hhcC-Ccccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 6653 11110 0000 0011122223 34443 35999999999999999999999999999776444333
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.21 E-value=9.5e-11 Score=125.84 Aligned_cols=215 Identities=13% Similarity=0.223 Sum_probs=137.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
.+.|+||||.+.+++.+++. .+.|+.|++. ..++.++.|++|+.|-+.- ..++++.+.....+. .. +
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gI--------dh--~ 156 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGI--------DH--H 156 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecccccccc--------cc--c
Confidence 47799999999999999997 5799999996 6788899999999998765 355555443211111 00 0
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
- ...-.|..+.++-+|+..|..|- ..+. .|+.++.
T Consensus 157 ~-~~~~FaTcGe~i~IWD~~R~~Pv------------------~sms----------------wG~Dti~---------- 191 (433)
T KOG0268|consen 157 R-KNSVFATCGEQIDIWDEQRDNPV------------------SSMS----------------WGADSIS---------- 191 (433)
T ss_pred c-ccccccccCceeeecccccCCcc------------------ceee----------------cCCCcee----------
Confidence 0 00011222222333333222221 0000 0001000
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
++ ..++- -...++++..|+.|.|||++...++..+.- +..-+.|+|+|.+--+++|++|- ++..||++.
T Consensus 192 --sv-kfNpv------ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~-nlY~~DmR~ 260 (433)
T KOG0268|consen 192 --SV-KFNPV------ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDH-NLYTYDMRN 260 (433)
T ss_pred --EE-ecCCC------cchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccc-cceehhhhh
Confidence 00 00110 011234556889999999999887765431 22346799999888899999995 589999875
Q ss_pred CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 301 ~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
- .+-...++++..| |.+++|||.|+-|++||-|.||+||.++..
T Consensus 261 l--------------~~p~~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 261 L--------------SRPLNVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred h--------------cccchhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 3 2222345777666 899999999999999999999999999875
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.5e-10 Score=122.44 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=89.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.++++-|.+..+||+.++.++..+.+|....+.++-.|.-++++|+|.|-+ +++||+++. .+.+..
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFRea-------------I~sV~V 352 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREA-------------IQSVAV 352 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhh-------------cceeee
Confidence 345677889999999999999999999999999999999999999999965 999999864 223333
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc-eeecc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS-VNFQP 367 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~-~~~~~ 367 (779)
| .|++. .|+++.|.-|.+ +++||+|.||+|||+..-..+ .++++
T Consensus 353 F-QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 353 F-QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred e-ccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec
Confidence 3 57654 499999999876 669999999999999764433 45554
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.19 E-value=2.7e-10 Score=130.00 Aligned_cols=220 Identities=16% Similarity=0.299 Sum_probs=142.8
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc-----CcEEEE-EeCCeEEEEeCC-CCcEEEEEecCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS-----SRVVAI-CQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s-----~rlLaV-s~d~~I~IwD~~-T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
++++||||..-++...+. +.+.|..+.++ .++||. +-|.-|+|||+. ..-.+++|.+|..... .+
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT-------sv 553 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT-------SV 553 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee-------EE
Confidence 679999999888887776 47899999996 467776 567889999986 5667788887743111 01
Q ss_pred cccceeecC---ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccc
Q 004015 136 GYGPLAVGP---RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 212 (779)
Q Consensus 136 ~~~piAlgp---RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y 212 (779)
. +|... +-|..+..+.+.-...+ -.++|........-.+| .++-|+.
T Consensus 554 K---Fa~~gln~~MiscGADksimFr~~q--------------k~~~g~~f~r~t~t~~k------tTlYDm~------- 603 (1080)
T KOG1408|consen 554 K---FACNGLNRKMISCGADKSIMFRVNQ--------------KASSGRLFPRHTQTLSK------TTLYDMA------- 603 (1080)
T ss_pred E---EeecCCceEEEeccCchhhheehhc--------------cccCceecccccccccc------ceEEEee-------
Confidence 1 11110 22222222221110000 00011111000000000 0011111
Q ss_pred cccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 213 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 213 ~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~---aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
+.+. .++++.+++|..|+|||+.+++.++.|+ .|.+..-.|..+|+|-||||...|
T Consensus 604 --------------Vdp~-------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 604 --------------VDPT-------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred --------------eCCC-------cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 1111 1245677899999999999999999998 567788899999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.+ +-+||.-.+ +++.++ .|+.. -|+.+-|++|.++|++.+.||.|.||.+..
T Consensus 663 kt-l~~~Df~sg--------------EcvA~m-~GHsE-~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 663 KT-LCFVDFVSG--------------ECVAQM-TGHSE-AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred Cc-eEEEEeccc--------------hhhhhh-cCcch-heeeeeecccchhheeecCCceEEEEECch
Confidence 87 899998875 333333 35432 389999999999999999999999999965
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.19 E-value=1.5e-10 Score=128.47 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=84.9
Q ss_pred ccccCCCCeEEEEECCCCc--EEEEe-ccCCC--CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 241 FPDADNVGMVIVRDIVSKN--VIAQF-RAHKS--PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~--~v~~f-~aHt~--~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
++.+..||.|.+||..+.. +...+ +||.. .|+||+||+||++|++-+.|++ ++|||++.. .
T Consensus 332 iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~-------------k 397 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF-------------K 397 (641)
T ss_pred hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc-------------c
Confidence 4556789999999986543 33333 49987 9999999999999999999988 899999874 1
Q ss_pred eEEEEeecCCCc-ccEEEEEEcCCCCEEEEEeC------CCeEEEEecCCCCCceeecc
Q 004015 316 VHLYRLQRGLTN-AVIQDISFSDDSNWIMISSS------RGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 316 ~~l~~l~rG~t~-a~I~sIaFSpDg~~LAtgS~------DGTVhIwdl~~~gg~~~~~~ 367 (779)
..|... .|..+ ..-+++|||||.+.|++|++ -|++.+||-.++.....+..
T Consensus 398 kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 398 KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 222222 23322 23579999999999999987 47899999988877766643
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=2.9e-11 Score=139.20 Aligned_cols=106 Identities=13% Similarity=0.260 Sum_probs=87.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++++++||.|++||++..+-..+|.+-..+|..|+|+| .+.++|++.+.|. +.+||++.. .++
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp---------------~r~ 212 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQP---------------DRC 212 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCc---------------hhH
Confidence 45778999999999999999999999889999999999 5889999999987 899999863 112
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.++-..+...|.++.|+|+..|||+|+.|++|+||+.......
T Consensus 213 ~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc
Confidence 2222223346999999999999999999999999999864333
No 109
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=1.6e-10 Score=126.65 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=80.2
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
|..+..+|+|+-+|+++. +++.+++||.++|++|++++.- .+|+|+|.|+. +++|++....+.. ...+-
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~--------v~~~~ 415 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKS--------VKEHS 415 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcc--------ccccc
Confidence 344568999999999975 8999999999999999999964 48999999987 9999987541111 12232
Q ss_pred EEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCC
Q 004015 319 YRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~g 360 (779)
.++ | +..|.++.|+- -++|+|+..+.++|||+..+.
T Consensus 416 ~~~--~----rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 416 FKL--G----RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccc--c----ceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 333 2 25678888864 468889999999999997753
No 110
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.18 E-value=2e-09 Score=116.45 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=93.6
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+.+.+.|-+|++||+.++..+.++.+- .+++|+..+|...+||+||.|.+ |++||-+.+ .++ +. ..
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~-irl~DPR~~-~gs---------~v-~~ 339 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH-IRLWDPRTG-DGS---------VV-SQ 339 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc-eeecCCCCC-CCc---------ee-EE
Confidence 4456788999999999999998887654 58999999999999999999977 999998875 111 11 22
Q ss_pred EeecCCCcccEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCC-CceeeccCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINPLG-GSVNFQPTDANF 372 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~~g-g~~~~~~H~~~~ 372 (779)
.| -|+. +.|..+.|+|...| |+++|.|+|+++||+.... ....+.+|.+.+
T Consensus 340 s~-~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 340 SL-IGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred ee-ecch-hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence 33 3544 36999999996654 7899999999999998877 567888886544
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.18 E-value=1.2e-10 Score=128.82 Aligned_cols=106 Identities=13% Similarity=0.284 Sum_probs=84.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..||.|.|||+.+...+.+|++|+..++||..++||+.|=||+-|.+ +|-||++++ +.+. ..
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt-vRcWDlreg--------------rqlq---qh 589 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT-VRCWDLREG--------------RQLQ---QH 589 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc-eeehhhhhh--------------hhhh---hh
Confidence 46899999999999999999999999999999999999999999976 999999976 2211 11
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
.-...|.++..+|.+.|||+|=..+-+.|-..... ....+.-|.
T Consensus 590 dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlhe 633 (705)
T KOG0639|consen 590 DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHE 633 (705)
T ss_pred hhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccc
Confidence 12346999999999999999988887766555432 223444453
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=6.4e-10 Score=117.92 Aligned_cols=61 Identities=21% Similarity=0.461 Sum_probs=57.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
++.++..||.|.|||..+..++.+|++|++.|+.|+..|+|++-++-+.|+. +++|++..+
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~-lr~WNLV~G 159 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV-LRTWNLVRG 159 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce-eeeehhhcC
Confidence 6778899999999999999999999999999999999999999999999976 999999876
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=4.9e-11 Score=136.55 Aligned_cols=114 Identities=18% Similarity=0.399 Sum_probs=95.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++.+..+|+|++||+...+.+.++.+|...|..|.|+|-|.+.|++|.|+. +++||++.- | +.+.|
T Consensus 85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd-~~iwD~Rk~--G----------c~~~~- 150 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTD-LKIWDIRKK--G----------CSHTY- 150 (825)
T ss_pred hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccc-ceehhhhcc--C----------ceeee-
Confidence 455678899999999999999999999999999999999999999999976 899999842 1 12322
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
+| +...|..+.|+|||+|++.+++|.+++|||+..+.-...|.+|...
T Consensus 151 --~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 151 --KS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK 198 (825)
T ss_pred --cC-CcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc
Confidence 34 3445888999999999999999999999999776666677777643
No 114
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.16 E-value=5.9e-11 Score=130.54 Aligned_cols=207 Identities=16% Similarity=0.197 Sum_probs=134.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE--cCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~--s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
+.|--+|..|+.+.+.|.....|++|.| +.+++||++.+.+||||-. +..+++|+.+..+. -+-
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~-------------rLe 216 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVA-------------RLE 216 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchh-------------hhc
Confidence 6688999999999999999999999999 7899999999999999965 56677777653211 111
Q ss_pred ecC-ce-eEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 142 VGP-RW-LAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 142 lgp-Rw-LAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+=| .| ||.++ ..|-+.-+. -|.|..|+. -....|+.. .+..
T Consensus 217 FLPyHfLL~~~~------~~G~L~Y~D----------VS~GklVa~-----------~~t~~G~~~---------vm~q- 259 (545)
T KOG1272|consen 217 FLPYHFLLVAAS------EAGFLKYQD----------VSTGKLVAS-----------IRTGAGRTD---------VMKQ- 259 (545)
T ss_pred ccchhheeeecc------cCCceEEEe----------echhhhhHH-----------HHccCCccc---------hhhc-
Confidence 111 11 11111 011110000 012222211 111112211 0111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
+| .|+++ -.+...|+|.+|.-.+.+++..+.+|.++|++|+++++|+|+||++.|.. ++|||++
T Consensus 260 --------NP---~NaVi----h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR 323 (545)
T KOG1272|consen 260 --------NP---YNAVI----HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLR 323 (545)
T ss_pred --------CC---ccceE----EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeec
Confidence 11 12222 23567899999999999999999999999999999999999999999965 9999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
.. .++.+++. +.....++||.-|- ||.+ .-..|+||.=
T Consensus 324 ~~--------------~ql~t~~t---p~~a~~ls~Sqkgl-LA~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 324 NF--------------YQLHTYRT---PHPASNLSLSQKGL-LALS-YGDHVQIWKD 361 (545)
T ss_pred cc--------------cccceeec---CCCccccccccccc-eeee-cCCeeeeehh
Confidence 75 33444432 33467899998773 4433 3446888864
No 115
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.14 E-value=7.2e-09 Score=111.73 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=140.7
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..-.||++.+|+.+.++. ++..|..+.|+ +.+||. .++++|.||+..|+.....+... .+-
T Consensus 86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e---------------~~d 150 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE---------------VED 150 (399)
T ss_pred ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc---------------cCc
Confidence 557899999999988886 58899999997 778887 58999999999999988887521 011
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
| -||-+-. . +.
T Consensus 151 i----eWl~WHp-------------~--------------a~-------------------------------------- 161 (399)
T KOG0296|consen 151 I----EWLKWHP-------------R--------------AH-------------------------------------- 161 (399)
T ss_pred e----EEEEecc-------------c--------------cc--------------------------------------
Confidence 1 2554431 0 00
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.++.||.|-+|.+.++...+.|.+|..++++=+|.|||+.++++..||+ |++|+..
T Consensus 162 --------------------illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~k 220 (399)
T KOG0296|consen 162 --------------------ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPK 220 (399)
T ss_pred --------------------EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecC
Confidence 1233567899999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
++ +.+.++.. .......+++++.++..+..|+.++.+++-....+.-.....
T Consensus 221 tg--------------~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 221 TG--------------QPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred CC--------------ceeEEecc-cccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 86 33444421 112236789999999999999999999998776654333333
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=7.6e-09 Score=105.56 Aligned_cols=100 Identities=20% Similarity=0.349 Sum_probs=83.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--C-----CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRA--H-----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~a--H-----t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
|+++++|.+|+.||++-..++.++.. | .+.|.+++.+|+|++||++-.|.. ..+|||+-+
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydirg~------------ 263 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIRGG------------ 263 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEeeCC------------
Confidence 45667899999999998888877652 2 257999999999999999999976 799999865
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+.+.+++. +.+.|.++.|||...|+.++|.|..|++=|+.
T Consensus 264 --r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 --RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred --ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 55666643 34679999999999999999999999999884
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.12 E-value=3.8e-09 Score=125.96 Aligned_cols=204 Identities=16% Similarity=0.166 Sum_probs=135.7
Q ss_pred CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEE
Q 004015 256 VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF 335 (779)
Q Consensus 256 ~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaF 335 (779)
.+.+++..|++|.+.|..|+|+|++.+||++|.|.+ |.||+..+. ..+.++ +|+. ..|-.++|
T Consensus 117 E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns-Viiwn~~tF--------------~~~~vl-~~H~-s~VKGvs~ 179 (942)
T KOG0973|consen 117 ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS-VIIWNAKTF--------------ELLKVL-RGHQ-SLVKGVSW 179 (942)
T ss_pred ceeeEEEEEecCCCccceeccCCCccEEEEecccce-EEEEccccc--------------eeeeee-eccc-ccccceEE
Confidence 445788999999999999999999999999999987 899998764 344444 5654 45889999
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCccCCCcCCcceecCCCCCCCCCCCCccccCC----CCeeeee
Q 004015 336 SDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASG----PPVTLSV 411 (779)
Q Consensus 336 SpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~~l~~~~----pp~~ls~ 411 (779)
.|-|+|||+-++|+|++||++.+.+..-.+..+ |.-.+..+.+++..|+ ||.+.|+.++ |--++..
T Consensus 180 DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p------f~~~~~~T~f~RlSWS----PDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 180 DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP------FEESPLTTFFLRLSWS----PDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred CCccCeeeeecCCceEEEEEcccceeeEeeccc------hhhCCCcceeeecccC----CCcCeecchhhccCCcceeEE
Confidence 999999999999999999999887666566544 3333455566666666 8999997654 2223444
Q ss_pred eEEeecC-C-----CCCCCcccCcccccc--------CCcCCCC--Cceee--------eeeccCCCCcccccCCc----
Q 004015 412 VSRIRNG-N-----NGWRGTVSGAAAAAT--------GRVSSLS--GAIAS--------SFHNCKGNSETYAAGSS---- 463 (779)
Q Consensus 412 v~ri~~~-~-----~~~~~~v~~~a~~~~--------g~~~~~~--g~~~~--------~~~~~~~~~~~~~~~~~---- 463 (779)
|.| +. . -|+.++|.=+++.+. |.+.... =+|+| +.++..-.-|++.-.+-
T Consensus 250 ieR--~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 250 IER--GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred Eec--CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 444 11 0 145666666666654 2221110 01221 22222111122211110
Q ss_pred ------ccccccEEEEccCccEEEEeeeecc
Q 004015 464 ------LKIKNHLLVFSPSGCMIQYALRIST 488 (779)
Q Consensus 464 ------~~~~~~l~V~~p~G~liqy~L~~~~ 488 (779)
...--.|||.+-+|.|.+..+...-
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 2355689999999999999888774
No 118
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1e-09 Score=117.42 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=128.4
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc----Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s----~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
+.++|++||..||+.+..++. +..+..|+|. .+ ++..+.|++|++||+++......+..-..+ +.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-~~-------- 118 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-GT-------- 118 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-CC--------
Confidence 447899999999999999987 6778888883 34 445578999999999988765555432110 00
Q ss_pred cccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 136 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 136 ~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
.+..++ ...+. . ++..|
T Consensus 119 ~f~~ld-------~nck~---------------------------~----------------ii~~G------------- 135 (376)
T KOG1188|consen 119 PFICLD-------LNCKK---------------------------N----------------IIACG------------- 135 (376)
T ss_pred cceEee-------ccCcC---------------------------C----------------eEEec-------------
Confidence 111111 11000 0 00000
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE-EEE-eccCCCCeEEEEEcCC-CCEEEEEeCCCCE
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQ-FRAHKSPISALCFDPS-GILLVTASVQGHN 292 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~-v~~-f~aHt~~IsaLaFSPd-G~lLATaS~DGt~ 292 (779)
+. -...+-.|.+||++..+. +.. +..|...|++|+|.|+ -.+|+|||.||-
T Consensus 136 ------------------------tE-~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL- 189 (376)
T KOG1188|consen 136 ------------------------TE-LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL- 189 (376)
T ss_pred ------------------------cc-cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-
Confidence 00 012345789999998765 555 4599999999999995 679999999996
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCCceee
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
|+|||+... . .+..+.+ .+..| +.|-++.|..++ +.|.+-+...+..+|+++.......+
T Consensus 190 vnlfD~~~d-~-------EeDaL~~--viN~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 190 VNLFDTKKD-N-------EEDALLH--VINHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred EEeeecCCC-c-------chhhHHH--hhccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 999999753 1 0112222 22222 348899999888 34778889999999999987654444
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.2e-08 Score=116.87 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=85.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
...+|.|.-||+.+.+++..+..-.++|.+++.+|.++.|+.+++||. +..+++.++ ...+-..|.|
T Consensus 86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGv-l~~~s~~p~------------~I~~~r~l~r 152 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGV-LYDFSIGPD------------KITYKRSLMR 152 (691)
T ss_pred ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCce-EEEEecCCc------------eEEEEeeccc
Confidence 345789999999999999999999999999999999999999999994 788888775 1122122222
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..++|.+++|+|++..||+|+.||.|+|||+.....
T Consensus 153 --q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 153 --QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred --ccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 246799999999999999999999999999987643
No 120
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=2.4e-09 Score=124.88 Aligned_cols=176 Identities=18% Similarity=0.253 Sum_probs=120.9
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
...|||||++.+.+|++++.++.-|.+|+|+ .+ +|..++|++|+||++...+....-......
T Consensus 388 MDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lI------------- 454 (712)
T KOG0283|consen 388 MDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLI------------- 454 (712)
T ss_pred ccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhh-------------
Confidence 4699999999999999999999999999996 44 455689999999999876544332211000
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.| +.| .
T Consensus 455 --TA-----vcy-------------------------------------------------------------------~ 460 (712)
T KOG0283|consen 455 --TA-----VCY-------------------------------------------------------------------S 460 (712)
T ss_pred --ee-----EEe-------------------------------------------------------------------c
Confidence 00 011 1
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec---------cCCCCeEEEEEcCCCC--EEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---------AHKSPISALCFDPSGI--LLVTA 286 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~---------aHt~~IsaLaFSPdG~--lLATa 286 (779)
|+|.+ .+-+...|.+++|+....+.+..+. .|. .|+.+.|.|.-. +|+|
T Consensus 461 PdGk~------------------avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT- 520 (712)
T KOG0283|consen 461 PDGKG------------------AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT- 520 (712)
T ss_pred cCCce------------------EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe-
Confidence 22211 1123467889999988877665543 123 799999998533 6665
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
|.|.+ |+|||.... .+.+.++ |..+.. =...+|+.||++|++++.|.-|+||++....
T Consensus 521 SnDSr-IRI~d~~~~------------~lv~KfK---G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 521 SNDSR-IRIYDGRDK------------DLVHKFK---GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cCCCc-eEEEeccch------------hhhhhhc---ccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 56666 999999653 2233332 322222 2478999999999999999999999996653
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.07 E-value=5.3e-09 Score=110.55 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=124.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.+.+++|||.+++....-.+..+|..++|= -..|+. +.|++|+.||.+.-..+.++.--..++.- =..
T Consensus 93 Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~-------Dv~ 165 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAA-------DVL 165 (347)
T ss_pred CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeeh-------hcc
Confidence 578999999999876666678999999992 234454 79999999999998888887531111110 012
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.||++ +|.+.+.+++.+.. ++.+.- |.+.+-+ +...+ |-+..
T Consensus 166 ~pm~v----Vata~r~i~vynL~------------------n~~te~-------k~~~SpL--------k~Q~R-~va~f 207 (347)
T KOG0647|consen 166 YPMAV----VATAERHIAVYNLE------------------NPPTEF-------KRIESPL--------KWQTR-CVACF 207 (347)
T ss_pred CceeE----EEecCCcEEEEEcC------------------CCcchh-------hhhcCcc--------cceee-EEEEE
Confidence 34443 34444433332110 000000 0000000 00000 00011
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC--cEEEEeccCCC---------CeEEEEEcCCCCEEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKS---------PISALCFDPSGILLVTA 286 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~--~~v~~f~aHt~---------~IsaLaFSPdG~lLATa 286 (779)
++.+ .++-+.-.|.|.|..+..+ +.-.+|++|.. +|+.|+|.|.-..|||+
T Consensus 208 ~d~~------------------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa 269 (347)
T KOG0647|consen 208 QDKD------------------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA 269 (347)
T ss_pred ecCC------------------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEe
Confidence 1111 1233456788888888775 55567889973 57889999998899999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS 346 (779)
+.||+ +..||-... ..|....+ ....|.+.+|+.+|.++|.+.
T Consensus 270 GsDGt-f~FWDkdar--------------~kLk~s~~--~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 270 GSDGT-FSFWDKDAR--------------TKLKTSET--HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cCCce-EEEecchhh--------------hhhhccCc--CCCccceeEecCCCCEEEEEe
Confidence 99998 999996542 22332222 245699999999999998774
No 122
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.3e-09 Score=123.83 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=92.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+..+|.|.|||..+.+.+..+.. |...|.+|+|+ +..|.+|+.+|. |.++|++.. .++..
T Consensus 233 avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~-I~~~dvR~~--------------~~~~~ 295 (484)
T KOG0305|consen 233 AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGK-ILNHDVRIS--------------QHVVS 295 (484)
T ss_pred EEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCc-EEEEEEecc--------------hhhhh
Confidence 3445679999999999999999998 99999999999 778999999998 899999864 11111
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
..+++ ...|-.+.|++|+++||+|+.|+.++|||.........+..|...+
T Consensus 296 ~~~~H-~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 296 TLQGH-RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred hhhcc-cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceee
Confidence 12333 2358899999999999999999999999998777778888886543
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.06 E-value=5.3e-09 Score=119.83 Aligned_cols=234 Identities=19% Similarity=0.275 Sum_probs=145.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCC---EEE-EEE--c--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP---IYS-VRC--S--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~---V~s-V~~--s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
++++||+-+.++++.+..|..+ |.. +++ + .++++.+.|+.|.+|...+.+.+++|.+|..-. |+-+ +
T Consensus 35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV-C~ls----~ 109 (745)
T KOG0301|consen 35 GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV-CSLS----I 109 (745)
T ss_pred CceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccce-eeee----c
Confidence 7799999999998887666322 222 444 2 456777899999999999999999999996411 2100 1
Q ss_pred cccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeec-----------ccccchhceeeecCCc
Q 004015 136 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK-----------ESSKHLAAGIVNLGDL 204 (779)
Q Consensus 136 ~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~-----------~~sK~La~Gl~~lGd~ 204 (779)
...+.-++..|= ...++|..|.+.-. + .|...+.||. .+.|.+. .+.|+.
T Consensus 110 ~~~~~~iSgSWD----~TakvW~~~~l~~~-l-----------~gH~asVWAv~~l~e~~~vTgsaDKtIk---lWk~~~ 170 (745)
T KOG0301|consen 110 GEDGTLISGSWD----STAKVWRIGELVYS-L-----------QGHTASVWAVASLPENTYVTGSADKTIK---LWKGGT 170 (745)
T ss_pred CCcCceEecccc----cceEEecchhhhcc-c-----------CCcchheeeeeecCCCcEEeccCcceee---eccCCc
Confidence 111121233331 12345533211000 0 0111111111 1111111 122222
Q ss_pred cccccccccccccCCCcCccccccCCCCCCCc--c-CCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC
Q 004015 205 GYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGT--V-NGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 281 (779)
Q Consensus 205 ~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~--v-~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~ 281 (779)
..++++.+..- +.|+ + ..+|.+.++||.|+.||+ +++++..+.+|+.-|.+++..+++.
T Consensus 171 ~l~tf~gHtD~-----------------VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 171 LLKTFSGHTDC-----------------VRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred hhhhhccchhh-----------------eeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC
Confidence 22333222110 1111 1 337888999999999999 7889999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 282 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 282 lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+++|+++|++ ++||+... +....++. + ..||++++=++|. |++|++||.|+||...+.
T Consensus 233 ~Ivs~gEDrt-lriW~~~e--------------~~q~I~lP-t---tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 233 LIVSTGEDRT-LRIWKKDE--------------CVQVITLP-T---TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eEEEecCCce-EEEeecCc--------------eEEEEecC-c---cceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9999999998 89999763 23333432 1 2499999988887 569999999999998754
No 124
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.04 E-value=3.4e-10 Score=125.22 Aligned_cols=103 Identities=17% Similarity=0.343 Sum_probs=91.6
Q ss_pred cccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+.++..|+.|+||++.. ++++.+|.+|..+|.+++|+++|+.++|+|.|+. |++||+.+| +.+
T Consensus 229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~-lKlwDtETG--------------~~~ 293 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF-LKLWDTETG--------------QVL 293 (503)
T ss_pred EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee-eeeeccccc--------------eEE
Confidence 346778899999999987 8999999999999999999999999999999987 899999987 556
Q ss_pred EEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCC
Q 004015 319 YRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~g 360 (779)
.+++.+ ..++|+.|.||+ +.|.+|..|+.|+.||+....
T Consensus 294 ~~f~~~---~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 294 SRFHLD---KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred EEEecC---CCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 666544 458899999999 889999999999999998764
No 125
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=5.1e-10 Score=130.37 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=115.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
..+-..|.|++||.+-+.++..|..|.+||..|+|.|++-++++|++|- .|+||+.... +++++|
T Consensus 25 LtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDy-kIkVWnYk~r--------------rclftL 89 (1202)
T KOG0292|consen 25 LTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDY-KIKVWNYKTR--------------RCLFTL 89 (1202)
T ss_pred EEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCcc-EEEEEecccc--------------eehhhh
Confidence 3445789999999999999999999999999999999999999999995 4999998764 778888
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC-------CCCccC--CCcCCcceecCCCCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA-------NFTTKH--GAMAKSGVRWPPNLGL 392 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~-------~~~~~~--~~~~~~~~r~~~~s~l 392 (779)
. |+- --|..+.|.+.=-||.++|+|-||+||+..+..+...+++|.- .+.+.. ..+++..+|-|-.++|
T Consensus 90 ~-GHl-DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 90 L-GHL-DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred c-ccc-ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 4 543 2499999999999999999999999999999999999999863 121111 6678999999999988
Q ss_pred CC
Q 004015 393 QM 394 (779)
Q Consensus 393 ~~ 394 (779)
..
T Consensus 168 Rk 169 (1202)
T KOG0292|consen 168 RK 169 (1202)
T ss_pred hc
Confidence 63
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=2.7e-09 Score=117.77 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=86.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.+.+|.+.+|..+..+.+|-.+|+||.|+-||.+|+|||.||. |++|++-.-.. ++...+...++.+. ++
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~-----a~~~~~~~p~~~f~-~H 173 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVS-----ADNDHSVKPLHIFS-DH 173 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeecc-----cccCCCccceeeec-cC
Confidence 6799999999999999999999999999999999999999999997 89998765311 11122345556653 22
Q ss_pred CcccEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 326 TNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 326 t~a~I~sIaFSp--Dg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
+ -.|+|+-..+ -..+|+++|.|.||++||+..+.-..+
T Consensus 174 t-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt 213 (476)
T KOG0646|consen 174 T-LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT 213 (476)
T ss_pred c-ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE
Confidence 2 3488876554 466899999999999999987643333
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=1.9e-08 Score=106.68 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=126.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.+.|+.+|+.+++...-..+..+|+.|..+ +.+|+.+.|++|++||.+...+..++..
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~------------------- 134 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ------------------- 134 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-------------------
Confidence 478999999999887777788899999986 6677889999999999987222222211
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+. ..|+++...
T Consensus 135 ----------------------------------------~k--kVy~~~v~g--------------------------- 145 (323)
T KOG1036|consen 135 ----------------------------------------GK--KVYCMDVSG--------------------------- 145 (323)
T ss_pred ----------------------------------------Cc--eEEEEeccC---------------------------
Confidence 00 011111100
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
..++.+..+-.|.+||+++.....+.+ .-+-.+.||++-|++.=.|.+|.||+ |-|=.
T Consensus 146 -------------------~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~ 205 (323)
T KOG1036|consen 146 -------------------NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEY 205 (323)
T ss_pred -------------------CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEc
Confidence 012234556789999999876544333 33468999999999988999999998 55544
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCc-----ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTN-----AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~-----a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
+.+. ... .+....++.||-... .+|.+|+|+|--+.||||+.||-|.+||+.+......+.
T Consensus 206 ~d~s-~~~-------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 206 FDDS-EEA-------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred cCCc-hHH-------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc
Confidence 4332 001 012233344443221 238899999999999999999999999998876655543
No 128
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.00 E-value=5.1e-09 Score=109.04 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=57.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.|..+..-||+++||||+.||+ ||||.-++..+ ..+.++++ +.|+++|||||+..+|++|.|+
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~p------------LAVLkyHs----agvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNP------------LAVLKYHS----AGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CccceEEccCCcEEeecccCCc-EEEEEeccCCc------------hhhhhhhh----cceeEEEeCCCCchhhhccCCc
Confidence 4677889999999999999998 89998876510 11223333 4599999999999999999999
Q ss_pred eEEEEec
Q 004015 350 TSHLFAI 356 (779)
Q Consensus 350 TVhIwdl 356 (779)
+|-+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999997
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=2.7e-08 Score=113.89 Aligned_cols=188 Identities=19% Similarity=0.275 Sum_probs=129.6
Q ss_pred CEEEEEECCCCcEEEE-EeC--CCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHM-LKF--RSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~t-Lkf--~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
+.|-||+++.+=+... |.. ...|.+++|. .|++.+++++.|.-||+.+++.++.+.... ..+.
T Consensus 47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~g------------g~IW 114 (691)
T KOG2048|consen 47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNG------------GAIW 114 (691)
T ss_pred CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCC------------ccee
Confidence 6699999988644332 333 5789999995 789999999999999999999888774321 0111
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.||+. |. +
T Consensus 115 siai~--------------------p~--------------~-------------------------------------- 122 (691)
T KOG2048|consen 115 SIAIN--------------------PE--------------N-------------------------------------- 122 (691)
T ss_pred EEEeC--------------------Cc--------------c--------------------------------------
Confidence 22211 00 0
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEE--EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI--AQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v--~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
..++-++.+|.+..++...+... ..|..-++.|.+|+|+|+|+.||+|+.||. |++|
T Consensus 123 --------------------~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-Iriw 181 (691)
T KOG2048|consen 123 --------------------TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV-IRIW 181 (691)
T ss_pred --------------------ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce-EEEE
Confidence 00112356676666666655443 335566789999999999999999999996 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEE-----EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLY-----RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~-----~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
|+..+ ...++. ++.++ ...-|+++.|=.|+. ||+|.+.|+|.+||-..+.-...+..|..
T Consensus 182 d~~~~------------~t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 182 DVKSG------------QTLHIITMQLDRLSKR-EPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred EcCCC------------ceEEEeeecccccccC-CceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 99875 122322 22222 123389999987775 78999999999999988766666666654
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.8e-08 Score=102.66 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=82.6
Q ss_pred cccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCC----CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPdG----~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
.|+++.-|..|+||+..+++ .-.+|.+|++-|..+++.|.- .+||++|.||+ +.||..... .++ +
T Consensus 177 rlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e-~e~-----w-- 247 (299)
T KOG1332|consen 177 RLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE-YEP-----W-- 247 (299)
T ss_pred eeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc-cCc-----c--
Confidence 56788889999999999863 345689999999999999974 47999999998 789986532 000 0
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
....|..+ +..++.++||..|.+||++..|..|.+|.=+..|.
T Consensus 248 k~tll~~f-----~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 248 KKTLLEEF-----PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred cccccccC-----CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 01112121 23489999999999999999999999998766543
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.97 E-value=4.7e-08 Score=112.15 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.+..|+.+|+.++++|+..|.+ |+||++..+ ....+++-.+++. .....+...|.|-|||++.+|+
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrn-irif~i~sg------------Kq~k~FKgs~~~e-G~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRN-IRIFDIESG------------KQVKSFKGSRDHE-GDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccc-eEEEecccc------------ceeeeecccccCC-CceEEEEECCCccEEEEeecCC
Confidence 4666777777788888888865 888888765 2233333334332 2356899999999999999999
Q ss_pred eEEEEecCCCCCceeeccCCCCCC
Q 004015 350 TSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 350 TVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
|+-+||+..+.+.....+|...+.
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVT 687 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchhee
Confidence 999999999999989999986554
No 132
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.94 E-value=2.6e-09 Score=113.89 Aligned_cols=102 Identities=22% Similarity=0.358 Sum_probs=85.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+..-|.|+|.|+.++++...+.+|..+|+.|+|.|+ -+||++||.|- .|++|+|.+. .++..
T Consensus 109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~--------------~Cv~V 173 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTD--------------VCVAV 173 (385)
T ss_pred EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc-eEEEEeccCC--------------eEEEE
Confidence 33446799999999999999999999999999999996 57999999994 5999999986 33333
Q ss_pred e--ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 321 L--QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 321 l--~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+ ..|+ ...|.++.|++||.+||+++.|.++++|+|+..
T Consensus 174 fGG~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 174 FGGVEGH-RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred ecccccc-cCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 3 1222 224999999999999999999999999999853
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.93 E-value=3.9e-09 Score=119.95 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=77.1
Q ss_pred CCCeEEEEECCCCc------EEEE--eccC---CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 246 NVGMVIVRDIVSKN------VIAQ--FRAH---KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 246 ~dG~V~VwDl~s~~------~v~~--f~aH---t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.|+.|+|||++... +... +.-| .-.+++|..+..|++|.....|++ |..|++...-..+
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~s~sP--------- 307 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSLSISP--------- 307 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEeccccCcCc---------
Confidence 58999999999753 2222 2233 236889999999998877777877 8999987651111
Q ss_pred eeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCCCC
Q 004015 315 YVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 373 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 373 (779)
..++. |..... -..-+.|||+.+|++|+.|..+.||.+......+.+ .+|+..+.
T Consensus 308 -~~~~s---g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 308 -VAEFS---GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVT 364 (720)
T ss_pred -hhhcc---CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEE
Confidence 00111 111111 123457999999999999999999999988776655 67754443
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=4.2e-08 Score=108.41 Aligned_cols=97 Identities=15% Similarity=0.310 Sum_probs=75.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
...|.|.|.-..+++.+.+|+- .+.|+.++|+.||+.|..++.+|. |.+||+... .+.+.+.-..+
T Consensus 322 G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~------------~~~~rf~D~G~ 387 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN------------SCLHRFVDDGS 387 (514)
T ss_pred ccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCce-EEEEecCCc------------ceEEEEeecCc
Confidence 3457788888888887777763 468999999999999999999996 899999864 23443433222
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.. =+++|.|++++|||+||..|.|-|||.+.
T Consensus 388 v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 388 VH---GTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cc---eeeeeecCCCceEEeccCcceEEEeccch
Confidence 21 36899999999999999999999999765
No 135
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.92 E-value=4.9e-09 Score=114.23 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=95.6
Q ss_pred ccccCCCCeEEEEECCCC---------cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCC-CCCccC
Q 004015 241 FPDADNVGMVIVRDIVSK---------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-TSSACD 310 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~---------~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g-~~s~~~ 310 (779)
++++..|..|+||-+... +.+..+..|+.+|+++.|+|+|.+||+|+++|. |.+|........ ....++
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-VFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce-EEEEEecCcCCccccchhh
Confidence 456777889999988642 245677899999999999999999999999987 899975521000 000111
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
.....+.+.+..||+ ...|++++|+||+.++++++.|.++++||++.+.-...+..|..-
T Consensus 108 ~~ke~w~v~k~lr~h-~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGH-RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred hCccceEEEEEeccc-ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 122335555556774 356999999999999999999999999999987666666667433
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=4e-08 Score=115.66 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=121.6
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|++.++.+....+.++ ++.+|..|.|+ +.+||+ +.+++|+|||+.++.+.+++..-...... ..+-
T Consensus 118 ~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~--------~~s~ 189 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF--------ILSR 189 (933)
T ss_pred eeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc--------cccc
Confidence 679999999988888776 58999999995 678887 67999999999999999888542110000 0000
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+. .-+|+ +| +
T Consensus 190 i~---~~~aW-------------~P------------------------------------------------------k 199 (933)
T KOG1274|consen 190 IC---TRLAW-------------HP------------------------------------------------------K 199 (933)
T ss_pred ee---eeeee-------------cC------------------------------------------------------C
Confidence 00 00000 01 1
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
+++++....++.|++|+..+......++ -|...+++++|||.|+|||+++.+|. |.|||
T Consensus 200 ------------------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWn 260 (933)
T KOG1274|consen 200 ------------------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWN 260 (933)
T ss_pred ------------------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEe
Confidence 1123334567899999999998888877 33344999999999999999999997 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
+.++ .+| .+. ..|.+++|-|++.-+-.-..-|+.-+|
T Consensus 261 v~t~-------------~~~--~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 261 VDTH-------------ERH--EFK-----RAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cccc-------------hhc--ccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence 9864 011 111 238899999999887666665555444
No 137
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=2.3e-08 Score=109.21 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=80.8
Q ss_pred CeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC--CCCCc----------cCCC--
Q 004015 248 GMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTSSA----------CDAG-- 312 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~--g~~s~----------~~~~-- 312 (779)
..+.+||+.++.....+. +|...+++.+|.|||..+++||.|++ |..||+..... |..-. .+..
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~-i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT-IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc-EEEecCCcchhhcccccccceeEEEEEcCCCcEE
Confidence 458999999998877776 56689999999999999999999987 78898764311 11000 0000
Q ss_pred -----CceeEEEE----eecCCC--cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 313 -----TSYVHLYR----LQRGLT--NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 313 -----~s~~~l~~----l~rG~t--~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
...-.+|. +.||.. ..+|.+++.|.|++++.+.-.+.++|+||+....-...+.+|
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred EEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 00011111 123321 234889999999999999999999999999764333333444
No 138
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.3e-07 Score=100.42 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=78.9
Q ss_pred CCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcCC-CC---EEEEEeCCCCEEEEEeCCCCCC----CCCCccCCC
Q 004015 245 DNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS-GI---LLVTASVQGHNINIFKIIPGIL----GTSSACDAG 312 (779)
Q Consensus 245 ~~dG~V~VwDl~s~----~~v~~f~aHt~~IsaLaFSPd-G~---lLATaS~DGt~I~Vwdi~~~~~----g~~s~~~~~ 312 (779)
..-+.++||..... ..++++..|+.+|.+|+|.|+ |+ +||+|+.|| |+||.+..... ...-+.+..
T Consensus 196 ~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~ 273 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLM 273 (361)
T ss_pred ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCc
Confidence 34468999987653 356788899999999999997 43 899999999 89999985310 000001111
Q ss_pred C--ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 313 T--SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 313 ~--s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+ .++.+-. -+.++.+|+.++|.-.|..|+++++||+|++|..+-
T Consensus 274 ~~l~v~~vs~--~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 274 TDLPVEKVSE--LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cccceEEeee--ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 1 1222222 234556799999999999999999999999998753
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.90 E-value=2.9e-07 Score=102.78 Aligned_cols=259 Identities=13% Similarity=0.170 Sum_probs=147.2
Q ss_pred cCCCCCCCc---CCCEEEEEECCCCcEEEEEe-C----CCCEEEEEE--cCcEEEEEeCCeEEEEeCCCCcEEEEEecCC
Q 004015 53 YHDLGNGSS---VPTVVHFYSLRSQSYVHMLK-F----RSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNP 122 (779)
Q Consensus 53 ~~~~~~~~~---~~~tVrIWDL~Tge~V~tLk-f----~s~V~sV~~--s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p 122 (779)
+|+.+...- -.+-+.||+++++..++.-. | +..|.+|+| ++++|..-.++.|.||+..+.+..++...|+
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecC
Confidence 566543322 34679999999999888764 3 456999999 5788888888999999999988877776653
Q ss_pred cccCCCCCCCccccccceeecC-ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhcee-
Q 004015 123 IVMGHPSAGGIGIGYGPLAVGP-RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI- 198 (779)
Q Consensus 123 ~~~~~p~s~~~~~~~~piAlgp-RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl- 198 (779)
.- + +.-+.+.. ..|. ++++ ++.|+.. ..+ +. .-.+- . +...-+.++.|-
T Consensus 288 gg----------v-~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k--~r----------~~elP-e-~~G~iRtv~e~~~ 340 (626)
T KOG2106|consen 288 GG----------V-FSLCMLRDGTLLS-GGKDRKIILWDDN-YRK--LR----------ETELP-E-QFGPIRTVAEGKG 340 (626)
T ss_pred Cc----------e-EEEEEecCccEee-cCccceEEecccc-ccc--cc----------cccCc-h-hcCCeeEEecCCC
Confidence 20 1 01111111 2222 3332 3333210 000 00 00000 0 000011122110
Q ss_pred -eecCCccccccccccccccCCCcCccccccCCCCCCCcc----CCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 004015 199 -VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTV----NGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 273 (779)
Q Consensus 199 -~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v----~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~Isa 273 (779)
..+|-..-..|... +.++..-......+.. =|+. ...+++..+|+.|+||+ ..+++.+.. -..++.|
T Consensus 341 di~vGTtrN~iL~Gt----~~~~f~~~v~gh~del-wgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~ 412 (626)
T KOG2106|consen 341 DILVGTTRNFILQGT----LENGFTLTVQGHGDEL-WGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAEC 412 (626)
T ss_pred cEEEeeccceEEEee----ecCCceEEEEecccce-eeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeE
Confidence 11111100000000 0010000000000000 0000 12346677899999999 555554433 2468999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 274 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 274 LaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
+.|+|.| .||.|...|+ -.|.|+.+. .+..++.- +.++..++|||||.+||+||.|+.|+|
T Consensus 413 ~~fhpsg-~va~Gt~~G~-w~V~d~e~~---------------~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATGR-WFVLDTETQ---------------DLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred eeccCcc-eEEEeeccce-EEEEecccc---------------eeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 9999999 9999999998 578887763 34444433 567999999999999999999999999
Q ss_pred EecCCCCCceee
Q 004015 354 FAINPLGGSVNF 365 (779)
Q Consensus 354 wdl~~~gg~~~~ 365 (779)
|.+...|..+..
T Consensus 474 y~Vs~~g~~y~r 485 (626)
T KOG2106|consen 474 YRVSANGRKYSR 485 (626)
T ss_pred EEECCCCcEEEE
Confidence 999998877765
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=5.3e-09 Score=111.02 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=90.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCC-----CCCc--c--C
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-----TSSA--C--D 310 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g-----~~s~--~--~ 310 (779)
+++.++.+|.|.|||+.+..+-..|.||..||++|+||+||++|+|+|.|- .|++||+..+..- ++.. + .
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~-si~lwDl~~gs~l~rirf~spv~~~q~h 115 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW-SIKLWDLLKGSPLKRIRFDSPVWGAQWH 115 (405)
T ss_pred eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc-eeEEEeccCCCceeEEEccCccceeeec
Confidence 467788999999999999998899999999999999999999999999996 5999999876210 0000 0 0
Q ss_pred CCCcee----------EEEEeec-----------CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 311 AGTSYV----------HLYRLQR-----------GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 311 ~~~s~~----------~l~~l~r-----------G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
+...-. .+..+.- |..+..-.+..|.+-|+|+.+|+++|.++|++.++..+...++.-
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 000000 0001100 000000012348888999999999999999999999887777643
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.88 E-value=5.2e-09 Score=113.13 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=88.8
Q ss_pred cccccCCCCeEEEEECCCCcE---EEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 240 HFPDADNVGMVIVRDIVSKNV---IAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~---v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
.+.+++-.+.|++|...++.- ...|.+|+.+|-.|+|||.- ..||+||.||+ |+|||++.++..+
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~---------- 294 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKA---------- 294 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccc----------
Confidence 345666778899999888653 24567899999999999974 48999999997 9999999752111
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc---eeeccCCCCCC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS---VNFQPTDANFT 373 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~---~~~~~H~~~~~ 373 (779)
.+.+ ..+.+.|.-|+|+.+-.+||+|++|||++||||...... ..|+-|...+.
T Consensus 295 -~~~~---kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 295 -AVST---KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred -eeEe---eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 1222 123346999999999999999999999999999775433 35566644443
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.87 E-value=7e-08 Score=101.86 Aligned_cols=135 Identities=18% Similarity=0.266 Sum_probs=100.1
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc-----CcEEEEEe-CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-----SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s-----~rlLaVs~-d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
.++||+||..|-+.+-.++|+..||+-+++ .-+||++. +-+|++.|+.++.+-++|.+|..
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~------------- 189 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD------------- 189 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-------------
Confidence 589999999999999999999999998885 34677765 45999999999999999988732
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+.+|+. +. |. ...
T Consensus 190 -~vlaV~-----Ws-------------p~--------------~e~---------------------------------- 202 (397)
T KOG4283|consen 190 -GVLAVE-----WS-------------PS--------------SEW---------------------------------- 202 (397)
T ss_pred -ceEEEE-----ec-------------cC--------------cee----------------------------------
Confidence 223321 10 00 000
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC-c--------------EEEEeccCCCCeEEEEEcCCCC
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-N--------------VIAQFRAHKSPISALCFDPSGI 281 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~-~--------------~v~~f~aHt~~IsaLaFSPdG~ 281 (779)
-++++..||.|++||++.- . .+.+=.+|.+.|..++|+.||.
T Consensus 203 -----------------------vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 203 -----------------------VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred -----------------------EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 0233456778888888642 1 1222348889999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCC
Q 004015 282 LLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 282 lLATaS~DGt~I~Vwdi~~~ 301 (779)
+|++.+.|.+ +++|+...+
T Consensus 260 ~l~~~gtd~r-~r~wn~~~G 278 (397)
T KOG4283|consen 260 YLASCGTDDR-IRVWNMESG 278 (397)
T ss_pred hhhhccCccc-eEEeecccC
Confidence 9999999977 899998766
No 143
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.86 E-value=1.9e-08 Score=110.47 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=91.4
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..+-.|+||............+|..+|+.+...|+|.||++||.||+ .-..|+..+ ..+....-
T Consensus 279 aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~-w~Fsd~~~g--------------~~lt~vs~ 343 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGT-WAFSDISSG--------------SQLTVVSD 343 (506)
T ss_pred cCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCce-EEEEEccCC--------------cEEEEEee
Confidence 445678999999888888888999999999999999999999999998 566677765 22222211
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
-...-.+.+++|.|||-+|++|+.||.++|||+........|-+|+..+
T Consensus 344 ~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 344 ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 1111238999999999999999999999999999988777888886543
No 144
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.84 E-value=1e-06 Score=91.84 Aligned_cols=184 Identities=18% Similarity=0.298 Sum_probs=129.5
Q ss_pred CCEEEEEECCC-CcEEEEEeC-CCCEEEEEEc--CcEEEEEe--CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~T-ge~V~tLkf-~s~V~sV~~s--~rlLaVs~--d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
...+++||..+ ...+..+.. ...|..+.|. .+.++++. ++.+++||+.+.+.+.++..|...
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 46899999998 677777665 6788889995 44555543 899999999997777777553110
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+ ..+++.. ++..
T Consensus 201 ---v----~~~~~~~---------------------------~~~~---------------------------------- 212 (466)
T COG2319 201 ---V----SSLAFSP---------------------------DGGL---------------------------------- 212 (466)
T ss_pred ---e----EEEEEcC---------------------------Ccce----------------------------------
Confidence 0 0112210 0000
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
.+.+...++.|++||...+..+. .+..|...+ ...|+|++.++++++.|+. +++
T Consensus 213 -----------------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~ 267 (466)
T COG2319 213 -----------------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRL 267 (466)
T ss_pred -----------------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEE
Confidence 01112457889999999888888 699999886 4489999999999999987 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
|++... ...+..+ .++ ...|.+++|+|++..+++++.|+++++|++..........
T Consensus 268 ~~~~~~-------------~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 268 WDLRSS-------------SSLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred eeecCC-------------CcEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 999864 1122333 232 3459999999999999999999999999887765444443
No 145
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.84 E-value=3.4e-07 Score=97.08 Aligned_cols=233 Identities=14% Similarity=0.114 Sum_probs=137.7
Q ss_pred CEEEEEECCC-CcEEEE--EeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRS-QSYVHM--LKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~T-ge~V~t--Lkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++||+|++.. |..+-. ..+..+|.+++|+ .++.+.+.|+++++||+.+.+ ..++..|..+.-++ ..+
T Consensus 50 ~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~------~wv 122 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTC------HWV 122 (347)
T ss_pred CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEE------EEe
Confidence 7899999976 555543 2358999999996 345556889999999999996 44555553221110 000
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.++- ...|+.++ -.+++..|-...++.++. ..|-|.. |+.++.
T Consensus 123 ~~~~--~~cl~TGS---------------------------WDKTlKfWD~R~~~pv~t--~~LPeRv------Ya~Dv~ 165 (347)
T KOG0647|consen 123 PGMN--YQCLVTGS---------------------------WDKTLKFWDTRSSNPVAT--LQLPERV------YAADVL 165 (347)
T ss_pred cCCC--cceeEecc---------------------------cccceeecccCCCCeeee--eecccee------eehhcc
Confidence 0000 01223322 122222222222221110 0111111 111110
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC----CCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK----SPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt----~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
...++.+..+..|.+|.+++.. ..|+.+. -.+.||+.-+|....|.||..|+ +
T Consensus 166 --------------------~pm~vVata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v 222 (347)
T KOG0647|consen 166 --------------------YPMAVVATAERHIAVYNLENPP--TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-V 222 (347)
T ss_pred --------------------CceeEEEecCCcEEEEEcCCCc--chhhhhcCcccceeeEEEEEecCCceEeeeecce-E
Confidence 0011223456679999998653 2344444 35889999898888899999998 7
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCC--cc---cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT--NA---VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t--~a---~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
-|..+....+ .....++.||... .. .|.+|+|.|.-..|+|+++|||.-.||-.......+...|
T Consensus 223 ~iq~id~~~~----------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 223 AIQYIDDPNP----------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred EEEecCCCCc----------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 8888876411 1234456666311 11 2789999999999999999999999998776666565666
Q ss_pred CCCCC
Q 004015 369 DANFT 373 (779)
Q Consensus 369 ~~~~~ 373 (779)
...++
T Consensus 293 ~qpIt 297 (347)
T KOG0647|consen 293 PQPIT 297 (347)
T ss_pred CCccc
Confidence 55444
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.3e-07 Score=100.72 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=77.7
Q ss_pred CeEEEEECCC--------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC-CCCCccCCCCceeEE
Q 004015 248 GMVIVRDIVS--------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-GTSSACDAGTSYVHL 318 (779)
Q Consensus 248 G~V~VwDl~s--------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~-g~~s~~~~~~s~~~l 318 (779)
-.|+||.+.= -..+..+++|...|.+++|||+.+.++|+|.||+ ++|||+.-... +. --
T Consensus 250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~q-----------Dp 317 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQ-----------DP 317 (420)
T ss_pred CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCC-----------Cc
Confidence 4577787531 1345678899999999999999999999999998 89999864310 00 00
Q ss_pred EEeecC------CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCCCC
Q 004015 319 YRLQRG------LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 373 (779)
Q Consensus 319 ~~l~rG------~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 373 (779)
+.|+.| .... -..++.||.|+.||.+. ..++++|.-+++....++ +.|...+.
T Consensus 318 k~Lk~g~~pl~aag~~-p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSE-PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred hHhhcCCcchhhcCCC-ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCcee
Confidence 122222 1112 23799999999988764 558999999886666666 46654444
No 147
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2.1e-08 Score=103.61 Aligned_cols=129 Identities=18% Similarity=0.357 Sum_probs=96.2
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 240 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSP--dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.+++.+.|++|+|+.+++. .++.+|.+|.+||..++|-. -|.+||++|.||+ |.||.-..+ .++
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~g-~w~--------- 93 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEENG-RWT--------- 93 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCCC-chh---------
Confidence 4567788999999999865 47899999999999999977 7999999999998 899986654 222
Q ss_pred eeEEEEeecCCCcccEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCCcee---eccCCCCCCccCCCcCCcceecCCC
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVN---FQPTDANFTTKHGAMAKSGVRWPPN 389 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSp--Dg~~LAtgS~DGTVhIwdl~~~gg~~~---~~~H~~~~~~~~~~~~~~~~r~~~~ 389 (779)
.++. +..+.+.|.+|+|.| -|-.||++++||+|.|+++...|+-.+ +..|..... .+.|.|.
T Consensus 94 --k~~e--~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn---------sVswapa 160 (299)
T KOG1332|consen 94 --KAYE--HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN---------SVSWAPA 160 (299)
T ss_pred --hhhh--hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc---------eeeecCc
Confidence 1222 223345699999988 467899999999999999988744322 245643333 3466665
Q ss_pred CCC
Q 004015 390 LGL 392 (779)
Q Consensus 390 s~l 392 (779)
+..
T Consensus 161 ~~~ 163 (299)
T KOG1332|consen 161 SAP 163 (299)
T ss_pred CCC
Confidence 533
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.83 E-value=2.3e-07 Score=102.70 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=79.0
Q ss_pred ccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 243 DADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~-v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.++.-|...+||++++.- ...+.-|...|+.|+|+|- -.+|||||.|++ .+|||++.-.... + -.++.
T Consensus 296 ~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l~~K~--------s-p~lst 365 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQLRGKA--------S-PFLST 365 (498)
T ss_pred EeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhhcCCC--------C-cceec
Confidence 345557889999998654 7778889999999999995 568999999998 7999998641111 0 02333
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+. +...|.+++|||++--|++.+.|.+|+|||..
T Consensus 366 ~~---HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 366 LP---HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cc---ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 32 12349999999998889999999999999995
No 149
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=2e-08 Score=106.74 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=92.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~--lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+++++.|-+|+|||+.+...+..+-.|.+.|+||.|.+.-. .|++|++||+ |.||+..+. ..+
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~-i~iw~~~~W--------------~~~ 120 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH-IIIWRVGSW--------------ELL 120 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc-EEEEEcCCe--------------EEe
Confidence 45678899999999999999999999999999999999876 8999999998 899998764 344
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..+ +++. ++|++|+..|.++.-.+.+.|++++.|++-.+..-...
T Consensus 121 ~sl-K~H~-~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 121 KSL-KAHK-GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eee-cccc-cccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 444 5554 44999999999999999999999999999876655444
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.81 E-value=4.2e-07 Score=101.52 Aligned_cols=99 Identities=18% Similarity=0.314 Sum_probs=78.6
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++-+...|.-.|.|..+...+..-.. ..+|++++|+|||.+||.||.|+. |.||.+... | .....+
T Consensus 420 ~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~--g---------~~y~r~ 486 (626)
T KOG2106|consen 420 VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN--G---------RKYSRV 486 (626)
T ss_pred eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC--C---------cEEEEe
Confidence 455666778899999999655544444 889999999999999999999987 899998753 1 112223
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
...+| +.|+-+.||+|++||.+-|.|-.+..|
T Consensus 487 ~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 487 GKCSG---SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeecC---ceeEEeeecCCCceEEeccCceEEEEE
Confidence 33344 679999999999999999999999999
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.79 E-value=1.4e-06 Score=90.75 Aligned_cols=99 Identities=25% Similarity=0.440 Sum_probs=77.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
.++.+++||+.....+..+..|...|.+++|+|+|. ++++++.|+. |++||...+ ..+.....+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~~wd~~~~--------------~~~~~~~~~ 240 (466)
T COG2319 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTG--------------KLLRSTLSG 240 (466)
T ss_pred CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc-EEEEECCCC--------------cEEeeecCC
Confidence 378999999999999999999999999999999998 6666688987 789987643 222212233
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
+.. .+ ..+|+|++.++++++.|+++++|++.....
T Consensus 241 ~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 241 HSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred CCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 322 22 228999999999999999999999987655
No 152
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.79 E-value=2e-07 Score=103.23 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=77.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+.-|.+++||++.. ...-.|.+|.+.|-|++|=.+- .++|||.+|. |-+|++..-.+ ..++.+..
T Consensus 304 GgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~-HfvsGSdnG~-IaLWs~~KKkp------------lf~~~~AH 368 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGS-IALWSLLKKKP------------LFTSRLAH 368 (479)
T ss_pred ccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc-ceeeccCCce-EEEeeecccCc------------eeEeeccc
Confidence 34789999999944 4455788999999999997665 6899999997 89999865311 11111111
Q ss_pred CCC--------cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 324 GLT--------NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 324 G~t--------~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|.. +..|.+++-.|.+..+|+||-+|.|++|.+++.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 111 125899999999999999999999999999876
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.78 E-value=1.4e-08 Score=116.41 Aligned_cols=99 Identities=15% Similarity=0.335 Sum_probs=79.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
..|+||...+...+..++.|.-.|+.|+|||||++|+++|.|.+ +.+|......... .. +..-.- +.
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~~e---------~~--fa~~k~-Ht 618 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIKDE---------FR--FACLKA-HT 618 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeecccchh---------hh--hccccc-cc
Confidence 47899999998888899999999999999999999999999976 8999876541100 00 111111 11
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
-.|++++|+||+.+|||+|.|.+|+||.+...
T Consensus 619 RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 619 RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 23999999999999999999999999999765
No 154
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.78 E-value=7.3e-08 Score=98.26 Aligned_cols=92 Identities=15% Similarity=0.355 Sum_probs=71.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D---Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+..+..|.|||++ .+.+.+|. ..+++.|+|||+|++||+|+.+ |. +.+||+... ..+.+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~--------------~~i~~ 140 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKK--------------KKIST 140 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCC--------------EEeec
Confidence 3455689999997 56666764 5688999999999999999754 44 899999864 44444
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeC------CCeEEEEecC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSS------RGTSHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~------DGTVhIwdl~ 357 (779)
... ..+.+++|||||++|++++. |..++||++.
T Consensus 141 ~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 141 FEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 432 23789999999999999985 7889999984
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.7e-08 Score=111.47 Aligned_cols=253 Identities=18% Similarity=0.172 Sum_probs=139.5
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc----CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s----~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++||||-+.||.||+++.|.+.|.+|+|+ .-+|||+.++.+.|-+..-+..+..-.+.......|- ---
T Consensus 421 DGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~------~~~ 494 (733)
T KOG0650|consen 421 DGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPN------ESE 494 (733)
T ss_pred CCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCC------ccC
Confidence 378999999999999999999999999996 3478898888888888776633222111100000000 000
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccc--cCCCcceeeeecccc-cchhceeeecCCcccccccccccc
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF--ASNGSRVAHYAKESS-KHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~--~s~g~~va~~A~~~s-K~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
|.+--..|+--+...+-. | + +-.+..-...... -..|.+++.++.+.+ |.+. .+.|++....
T Consensus 495 p~~~~~~W~~~~~~e~~~---~-v-~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl----------iHQLSK~~sQ 559 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEK---G-V-CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL----------IHQLSKRKSQ 559 (733)
T ss_pred Ccccceeechhhhhhhcc---c-e-EEEEecCCccceeeeecCCceEEEeccCCCcceEE----------EEeccccccc
Confidence 111000232221110000 0 0 0000000000000 135566655554332 2111 0111111111
Q ss_pred cc-CCCcCccccc-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 216 FL-PDSQNSLQSA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 216 l~-p~~~~si~sa-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
.. ....+.+..+ +-.. ....|+ .....|+|||+....+++.+..-...|+.|+.+|.|.-|+.++.|++ +
T Consensus 560 ~PF~kskG~vq~v~FHPs-----~p~lfV--aTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~ 631 (733)
T KOG0650|consen 560 SPFRKSKGLVQRVKFHPS-----KPYLFV--ATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-M 631 (733)
T ss_pred CchhhcCCceeEEEecCC-----CceEEE--EeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-e
Confidence 00 0011111111 0000 001122 23457999999998888888877788999999999999999999987 7
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+||+.-. ..-|+.-|-+. ..|.+++|.+-=..||+|+.||+++||--.-|
T Consensus 632 ~WfDldls--------------skPyk~lr~H~-~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 632 CWFDLDLS--------------SKPYKTLRLHE-KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred EEEEcccC--------------cchhHHhhhhh-hhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 89998753 11122223332 34899999999999999999999999854433
No 156
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=3.7e-07 Score=103.57 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=54.1
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeE
Q 004015 272 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 351 (779)
Q Consensus 272 saLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTV 351 (779)
.+++|+|||++|+.++.++ +.+||+.++ .... +..+. ...+++|||||++|+.++.++.+
T Consensus 336 ~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g------------~~~~---lt~~~---~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN--VVKQDLTSG------------STEV---LSSTF---LDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred CCccCCCCCCEEEEEcCCC--EEEEECCCC------------CeEE---ecCCC---CCCCceECCCCCEEEEEEcCCCc
Confidence 4578999999999888764 566898765 1111 11111 23568899999999999999999
Q ss_pred EEEecCC--CCCceeeccCC
Q 004015 352 HLFAINP--LGGSVNFQPTD 369 (779)
Q Consensus 352 hIwdl~~--~gg~~~~~~H~ 369 (779)
.+|.+.. ++....+.+|.
T Consensus 396 ~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 396 KVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred eEEEEEECCCCceEEccCCC
Confidence 9998753 33344455553
No 157
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.75 E-value=3.2e-06 Score=91.92 Aligned_cols=115 Identities=8% Similarity=0.128 Sum_probs=74.6
Q ss_pred ccCCCCeEEEEECCCCcEEE-------EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 243 DADNVGMVIVRDIVSKNVIA-------QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~-------~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
....++.|.|||+.+...+. .+... .....++|+|||++|++++.....|.+|++... . +..
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~---------~~~ 211 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-H---------GEI 211 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-C---------CCE
Confidence 34567899999998743221 12222 235679999999999888874456999999742 0 012
Q ss_pred eEEEEeec---CC-CcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCCceeeccC
Q 004015 316 VHLYRLQR---GL-TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 316 ~~l~~l~r---G~-t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg~~~~~~H 368 (779)
..+.++.. .. .......|+|+||+++|+++.. +++|.||++...++...+..|
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence 22333321 00 0111346999999999999854 789999999877665555444
No 158
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.75 E-value=1.5e-08 Score=107.37 Aligned_cols=111 Identities=16% Similarity=0.330 Sum_probs=88.7
Q ss_pred cccccCCCCeEEEEECCC-----------------C-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVS-----------------K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s-----------------~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
.+++++.|-.|+|.|+.. . -++++|-.|..+|++|.|.|-.++|+++|.|++ |++||+...
T Consensus 126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t-vKlFDfsK~ 204 (430)
T KOG0640|consen 126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT-VKLFDFSKT 204 (430)
T ss_pred EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe-EEEEecccH
Confidence 356778889999999861 1 367899999999999999999999999999987 899998653
Q ss_pred CCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 302 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 302 ~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+++.-++... ....|.+|+|.|.|.||++|+...++|+||++++.+-+.-
T Consensus 205 ------------saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 205 ------------SAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred ------------HHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 1222111111 1234999999999999999999999999999999776554
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.8e-07 Score=99.66 Aligned_cols=227 Identities=18% Similarity=0.219 Sum_probs=137.3
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|-|||+.|...-++|.. --+|.+|+++ +| +|..+.|..|..||+..+.+++.+.-.. |
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s-----p----------- 108 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS-----P----------- 108 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC-----c-----------
Confidence 6699999999887677754 5689999997 44 5556889999999999999998886421 1
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ ++..|.---.++.+.+.. +-+|.- ..+++-. ..+ +|.
T Consensus 109 v-~~~q~hp~k~n~~va~~~-~~sp~v--------------------------------i~~s~~~----h~~----Lp~ 146 (405)
T KOG1273|consen 109 V-WGAQWHPRKRNKCVATIM-EESPVV--------------------------------IDFSDPK----HSV----LPK 146 (405)
T ss_pred c-ceeeeccccCCeEEEEEe-cCCcEE--------------------------------EEecCCc----eee----ccC
Confidence 0 011111111111110000 000110 0111100 000 010
Q ss_pred -CcCccc-ccc--CCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 -SQNSLQ-SAI--PGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 -~~~si~-sa~--~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
.++... ++. ...+. ...++.+...|.+.|||..+.++++.|+--+ ..|-.|-|+..|+.|++-+.|. .||
T Consensus 147 d~d~dln~sas~~~fdr~----g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR 221 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRR----GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIR 221 (405)
T ss_pred CCccccccccccccccCC----CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEE
Confidence 001000 000 00000 1245677888999999999999999999666 8899999999999999999995 599
Q ss_pred EEeCCCCC-CCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCC
Q 004015 295 IFKIIPGI-LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPL 359 (779)
Q Consensus 295 Vwdi~~~~-~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~ 359 (779)
+|++..-. .|. .+.....++++--.......++|||-||.|+..+|.+ ..++||.-..+
T Consensus 222 ~ye~~di~~~~r------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 222 TYEISDIDDEGR------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEehhhhcccCc------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence 99987420 111 1122323343322223335689999999999888765 46999998764
No 160
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=6e-07 Score=105.70 Aligned_cols=256 Identities=16% Similarity=0.170 Sum_probs=141.7
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---Cc---EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SR---VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~r---lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
..+.|+||++.||++++.|.+ ..++..+.+. .. +++.++++.|.+||-...+.+.++...--
T Consensus 35 ~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~----------- 103 (792)
T KOG1963|consen 35 TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP----------- 103 (792)
T ss_pred eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-----------
Confidence 357899999999999999987 5778888884 21 33558999999999999999999976421
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
+.++. +-+|.+..+....... + +-..+...-.+..++........-.. ....+..
T Consensus 104 ----v~~~~-~~~~~a~~s~~~~~s~----~-------------~~~~~~~~s~~~~~q~~~~~~~t~~~---~~~d~~~ 158 (792)
T KOG1963|consen 104 ----VHALV-YKPAQADISANVYVSV----E-------------DYSILTTFSKKLSKQSSRFVLATFDS---AKGDFLK 158 (792)
T ss_pred ----eeEEE-echhHhCccceeEeec----c-------------cceeeeecccccccceeeeEeeeccc---cchhhhh
Confidence 11110 0012221111000000 0 00000000011112111111000000 0000000
Q ss_pred cc-cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe------ccCCCCeEEEEEcCCCCEEEEEe
Q 004015 215 EF-LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF------RAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 215 ~l-~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f------~aHt~~IsaLaFSPdG~lLATaS 287 (779)
.. .|. .+... . .+.+.....+-.+.+|+..++. .++ .-|+-.++|.+|||.++++|+|.
T Consensus 159 ~~~~~~---~I~~~-~--------~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d 224 (792)
T KOG1963|consen 159 EHQEPK---SIVDN-N--------SGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGD 224 (792)
T ss_pred hhcCCc---cEEEc-C--------CceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEec
Confidence 00 000 00000 0 0112222234467788887754 221 25777899999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.||+ |.||.-... +- .+.. -..+++.+ +.|.+++||+||.+|.+|+..|..-+|.+.+.+.. |
T Consensus 225 ~dGr-I~vw~d~~~----~~-----~~~t-~t~lHWH~--~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq--f-- 287 (792)
T KOG1963|consen 225 SDGR-ILVWRDFGS----SD-----DSET-CTLLHWHH--DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ--F-- 287 (792)
T ss_pred cCCc-EEEEecccc----cc-----cccc-ceEEEecc--cccceeEEecCCceEeecccceEEEEEeecCCCcc--c--
Confidence 9999 899964321 00 0111 12344432 46999999999999999999999999999987532 2
Q ss_pred CCCCCCccCCCcCCcceecCCCC
Q 004015 368 TDANFTTKHGAMAKSGVRWPPNL 390 (779)
Q Consensus 368 H~~~~~~~~~~~~~~~~r~~~~s 390 (779)
-++.|.++.+++-. +.+
T Consensus 288 -----LPRLgs~I~~i~vS-~ds 304 (792)
T KOG1963|consen 288 -----LPRLGSPILHIVVS-PDS 304 (792)
T ss_pred -----ccccCCeeEEEEEc-CCC
Confidence 23346666666433 444
No 161
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.74 E-value=4.9e-08 Score=103.64 Aligned_cols=130 Identities=23% Similarity=0.275 Sum_probs=97.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC-------CC-CCCCc------
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG-------IL-GTSSA------ 308 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~-------~~-g~~s~------ 308 (779)
+++.|.+.+||.+.+++|+.++.+|++.|++|+|+++|.+++|||.|++ -+||..... ++ +-+++
T Consensus 165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t-aHIW~~av~~~vP~~~a~~~hSsEeE~e~s 243 (481)
T KOG0300|consen 165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET-AHIWKAAVNWEVPSNNAPSDHSSEEEEEHS 243 (481)
T ss_pred ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc-hHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence 4566789999999999999999999999999999999999999999998 799973211 00 10111
Q ss_pred ------------cCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCcc
Q 004015 309 ------------CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTK 375 (779)
Q Consensus 309 ------------~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~~ 375 (779)
.+.-.--..+..| .| +.+.|.+..|=..|+.++++|-|.|..+||++++.-.-.+.+|...+...
T Consensus 244 De~~~d~d~~~~sD~~tiRvPl~~l-tg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 244 DEHNRDTDSSEKSDGHTIRVPLMRL-TG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC 320 (481)
T ss_pred cccccccccccccCCceeeeeeeee-ec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence 0000001123333 23 23568889999999999999999999999999876666778898776654
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.3e-08 Score=118.66 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=81.7
Q ss_pred CCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 247 VGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 247 dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
.-.|.+||++. ..+++.+++|...|.+|.|.+.+ ++|+|+..|++ |.+|+..++ +.++.+.++
T Consensus 231 ~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tg--------------Evl~~~p~~ 295 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTG--------------EVLGELPAQ 295 (1049)
T ss_pred CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCc--------------eEeeecCCC
Confidence 35799999985 46888999999999999999976 89999999998 899998875 567777553
Q ss_pred CCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCC
Q 004015 325 LTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~g 360 (779)
...+.++.|+|-.- .||+++-||+|-||.+....
T Consensus 296 --~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 --GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 23589999999655 89999999999999997653
No 163
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.73 E-value=9.9e-07 Score=95.72 Aligned_cols=200 Identities=20% Similarity=0.284 Sum_probs=130.8
Q ss_pred CEEEEEECCCCcEEEEEeCC----CCEEEEEEc--CcEEEE---EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR----SPIYSVRCS--SRVVAI---CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~----s~V~sV~~s--~rlLaV---s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
..|.|||+++-+.+|+|.-. ..+.++.+| +.+||. ...+.|++||+.+++...++..|..
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----------- 174 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----------- 174 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC-----------
Confidence 34999999999999999752 346666666 347876 3467999999999999999987742
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
++| .||+.. +|.++|
T Consensus 175 ----~lA----alafs~---------------------------~G~llA------------------------------ 189 (391)
T KOG2110|consen 175 ----PLA----ALAFSP---------------------------DGTLLA------------------------------ 189 (391)
T ss_pred ----cee----EEEECC---------------------------CCCEEE------------------------------
Confidence 233 244431 333332
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCC-eEEEEECCCCcEEEEeccCC--CCeEEEEEcCCCCEEEEEeCCCC
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG-MVIVRDIVSKNVIAQFRAHK--SPISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG-~V~VwDl~s~~~v~~f~aHt--~~IsaLaFSPdG~lLATaS~DGt 291 (779)
+++..| .|||+++.+++.+..|+.=+ ..|..|+|+||+++|+..|..++
T Consensus 190 ----------------------------TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 190 ----------------------------TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred ----------------------------EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 122233 57999999999999998554 35889999999999999999888
Q ss_pred EEEEEeCCCCCC-CCC--Cc-cCCC------------CceeEEEEeecCCCcccE------EEEEEc--CCCCEEEEEeC
Q 004015 292 NINIFKIIPGIL-GTS--SA-CDAG------------TSYVHLYRLQRGLTNAVI------QDISFS--DDSNWIMISSS 347 (779)
Q Consensus 292 ~I~Vwdi~~~~~-g~~--s~-~~~~------------~s~~~l~~l~rG~t~a~I------~sIaFS--pDg~~LAtgS~ 347 (779)
|+||.+..... ... .. .++. ..+...+...|.+..++| ..++|+ +...++.+++.
T Consensus 242 -VHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~ 320 (391)
T KOG2110|consen 242 -VHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY 320 (391)
T ss_pred -EEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc
Confidence 99998865421 000 00 0000 001111122222211111 235566 47889999999
Q ss_pred CCeEEEEecCCC-CCce-eeccC
Q 004015 348 RGTSHLFAINPL-GGSV-NFQPT 368 (779)
Q Consensus 348 DGTVhIwdl~~~-gg~~-~~~~H 368 (779)
||....|.+... ||.. .++.|
T Consensus 321 dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 321 DGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred CCeEEEEEcCCCCCceeEEEEee
Confidence 999999999884 4443 33555
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.72 E-value=1.2e-06 Score=95.22 Aligned_cols=104 Identities=10% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCeEEEEECCC--C--cEEEEeccC------CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 247 VGMVIVRDIVS--K--NVIAQFRAH------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 247 dG~V~VwDl~s--~--~~v~~f~aH------t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++.|.+||+.. + +.+..+..+ ......+.|+|||++|.++......|.+|++... + ....
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~--~--------~~~~ 265 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED--G--------SVLS 265 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC--C--------CeEE
Confidence 57888888863 2 233443322 1123469999999999998765556999998653 0 0111
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCCce
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSV 363 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg~~ 363 (779)
.+.....|. ....++|+|||++|++++. +++|.||++....+..
T Consensus 266 ~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 266 FEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 222222221 2457899999999998886 8999999997654443
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.9e-08 Score=119.12 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=79.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCC--CeEEEEEcCCCC-EEEEEeCCCC--EEEEEeCCCCCCCCCCccCCCCcee
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKS--PISALCFDPSGI-LLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~--~IsaLaFSPdG~-lLATaS~DGt--~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
+++...|.+.|||++.++++-.|.-|.. .++.|+|+||+. .|++|+.|.+ +|.+||++.. + .
T Consensus 178 AS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---s----------s 244 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---S----------S 244 (1049)
T ss_pred hccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---C----------C
Confidence 4456678999999999999988887765 578899999854 6777777654 6999998853 1 1
Q ss_pred EEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.+..+ +++.. -|.+++|++.+ ++|++++.|+.|.+|+.++..-
T Consensus 245 P~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 245 PLKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV 288 (1049)
T ss_pred chhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence 11222 33322 28899999955 9999999999999999998543
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.72 E-value=1e-07 Score=103.84 Aligned_cols=113 Identities=12% Similarity=0.223 Sum_probs=91.9
Q ss_pred ccccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCC
Q 004015 241 FPDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-------~~v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
+++++.|-+|.||++-.+ +++..+.+|...|.-++|.|.. ..|+||+.|-+ |.||++.++
T Consensus 97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~-v~iWnv~tg----------- 164 (472)
T KOG0303|consen 97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT-VSIWNVGTG----------- 164 (472)
T ss_pred eecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce-EEEEeccCC-----------
Confidence 467788999999998753 5788999999999999999975 48899998865 999999886
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
..++++. ++..|++++|+.||.+|++++.|..|+|||.....-...-.+|...
T Consensus 165 ---eali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 165 ---EALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred ---ceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 4455554 3456999999999999999999999999999875433333467654
No 167
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=2.9e-08 Score=108.43 Aligned_cols=103 Identities=16% Similarity=0.313 Sum_probs=86.1
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.+++++.|.+..||++... +...++.+|..+|..|.||||.++|++++.+.- +.+||+.++ ...
T Consensus 238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~-~~lwDv~tg------------d~~ 304 (519)
T KOG0293|consen 238 YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV-LSLWDVDTG------------DLR 304 (519)
T ss_pred eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh-eeeccCCcc------------hhh
Confidence 5678888999999987654 457889999999999999999999999999865 899999987 345
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
++|. .| +.-.+++++|.|||..+++|+.|+++..||+.-
T Consensus 305 ~~y~--~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 305 HLYP--SG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred hhcc--cC-cCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 5554 23 223489999999999999999999999999953
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.71 E-value=1.7e-07 Score=102.12 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=82.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.++..|.+|.||++.+++.+.++. |..-|.+++|+.||.+|+|++.|.. |+|||.+.+ .+.. ..
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~------------~~v~--e~ 211 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRG------------TVVS--EG 211 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCC------------cEee--ec
Confidence 345677899999999999999988 9999999999999999999999976 999999876 2222 22
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeC---CCeEEEEecCCCCCceee
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSS---RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~---DGTVhIwdl~~~gg~~~~ 365 (779)
.++..++-+.+-|=.+|.++.||-+ ++.+-|||-.....+..+
T Consensus 212 -~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~ 257 (472)
T KOG0303|consen 212 -VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL 257 (472)
T ss_pred -ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee
Confidence 3444455667889899997767655 456888987665555444
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.71 E-value=6.9e-07 Score=99.61 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=82.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++++...|.|+|||++.+.+.+.++.|++.|++|.++-...+||+++..|. |.|..+.+... .-.
T Consensus 94 ~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd-iiih~~~t~~~--------------tt~ 158 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD-IIIHGTKTKQK--------------TTT 158 (673)
T ss_pred eeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCc-EEEEecccCcc--------------ccc
Confidence 345667899999999998888999999999999999999999999999887 78888877511 112
Q ss_pred eecCCCcccEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCCce
Q 004015 321 LQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~L-AtgS~DGTVhIwdl~~~gg~~ 363 (779)
|.-+. ...|.=+.|||..+++ .+++++|+|++||+..-....
T Consensus 159 f~~~s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 159 FTIDS-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred eecCC-CCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 21111 1125578899988864 578999999999997654433
No 170
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.70 E-value=1e-07 Score=106.03 Aligned_cols=211 Identities=12% Similarity=0.162 Sum_probs=129.3
Q ss_pred CEEEEEECCCCcEEEEEeCCC---CEEEEEEc--Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCS--SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s---~V~sV~~s--~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.+|.||||.+-...-..+..+ .+|+++.+ .+ .++.+.|+.|.|||+.+...+.+|.+|+.-.
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa------------ 554 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA------------ 554 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCc------------
Confidence 679999998866443334433 47788887 23 3566889999999999999999999986421
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.+|.++. .--.+|..| -..+|..|.....+++.+. .++..+..|-
T Consensus 555 scIdis~-------dGtklWTGG------------------lDntvRcWDlregrqlqqh----------dF~SQIfSLg 599 (705)
T KOG0639|consen 555 SCIDISK-------DGTKLWTGG------------------LDNTVRCWDLREGRQLQQH----------DFSSQIFSLG 599 (705)
T ss_pred eeEEecC-------CCceeecCC------------------Cccceeehhhhhhhhhhhh----------hhhhhheecc
Confidence 2233321 111222211 1123333333333333210 0000000000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.....+| ++.+...+.|.|-.... .....+.-|.+-|.+|+|.+-|+++++.+.|. .++.|+
T Consensus 600 -------~cP~~dW---------lavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDn-lLnawr 661 (705)
T KOG0639|consen 600 -------YCPTGDW---------LAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWR 661 (705)
T ss_pred -------cCCCccc---------eeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchh-hhhhcc
Confidence 0001111 23344556666655443 33455667889999999999999999999995 589999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
..-+ ..++.... ...|.++..|-|.+||+|||.|....||.+
T Consensus 662 tPyG--------------asiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 662 TPYG--------------ASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred Cccc--------------cceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 8765 22343322 245999999999999999999999999876
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.67 E-value=3e-08 Score=112.49 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=82.5
Q ss_pred cccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 242 PDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~-------~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
+.+..+|.|+||.+..+ .+-..+.+|...|+.|.|.|= ..+||+++.|-+ |+|||+...
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~------------ 710 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANA------------ 710 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhh------------
Confidence 45678999999999754 466778899999999999994 668999999987 999999875
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
....+| -|++ ..|.++||||||+.+|+.+.||+++||.-...
T Consensus 711 --~~~~~l-~gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 711 --KLYSRL-VGHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred --hhhhee-ccCc-CceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 111233 4554 35999999999999999999999999986553
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.65 E-value=2.5e-07 Score=105.12 Aligned_cols=93 Identities=13% Similarity=0.236 Sum_probs=70.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+.+.+|-+|+|||+++.+.-..|.+|++.|..++|||||+++||.+.||+ |+||+-+... ..+|.-
T Consensus 694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e-------------~pv~Eg 759 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE-------------QPVYEG 759 (1012)
T ss_pred hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC-------------CccccC
Confidence 44567889999999999999999999999999999999999999999998 8999866531 122221
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.|-...+--.|.|.-||++|++.+.|.
T Consensus 760 -~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 760 -KGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred -CCCccCcceeEEEEecCcEEEEecccc
Confidence 111111123567888999998887664
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.65 E-value=2.4e-07 Score=102.23 Aligned_cols=117 Identities=15% Similarity=0.260 Sum_probs=94.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
-+++++.|.+|++||+.++++..++..|.+.|.+|+|.|. .++|++||.||+ ++++|.+.. ..+ ...
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~--~~s---------~~~ 325 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDP--SNS---------GKE 325 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce-EEeeeccCc--ccc---------Cce
Confidence 4578888999999999999999999999999999999995 889999999998 899999842 111 223
Q ss_pred EEeecCCCcccEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCCCc-eeeccCCCCCC
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINPLGGS-VNFQPTDANFT 373 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~~gg~-~~~~~H~~~~~ 373 (779)
+++ .+.|-.++|.|-+.. +.+++.||+++=||+...+.+ .+++.|.+.+.
T Consensus 326 wk~-----~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 326 WKF-----DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred EEe-----ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 444 245889999887654 667789999999999887544 36689977665
No 174
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=4.5e-06 Score=95.00 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=61.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG--t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.++|+.++.. ..+..+...+.+.+|+|||++|+.++.++ ..|.+||+..+ ... .+....
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g------------~~~---~Lt~~~- 374 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG------------GVQ---VLTDTF- 374 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC------------CeE---EeCCCC-
Confidence 344556666543 23333444566789999999998876543 23677887654 112 222221
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCe---EEEEecCCCCCceeeccCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGT---SHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGT---VhIwdl~~~gg~~~~~~H~ 369 (779)
...+.+|||||++|+.++.++. +.++++ +++....+.+|.
T Consensus 375 --~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~ 417 (429)
T PRK03629 375 --LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD 417 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC
Confidence 2346889999999999998875 455555 233344555553
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=1e-07 Score=107.50 Aligned_cols=112 Identities=22% Similarity=0.329 Sum_probs=88.4
Q ss_pred CcccccCCCCeEEEEECCC--------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 239 GHFPDADNVGMVIVRDIVS--------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 239 g~~~s~~~dG~V~VwDl~s--------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
..++.++.+|++++|.+.. .+++.+|++|.+||-|++..+.|..+.||+.||+ |+.|.+.+.. +
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~-------d 378 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQ-------D 378 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCC-------C
Confidence 3567889999999999932 3589999999999999999999999999999998 9999887431 0
Q ss_pred CCCce--eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 311 AGTSY--VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 311 ~~~s~--~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+..++ ..+....-|++.+ |+.+++|+....|+++|.|||+++|.....
T Consensus 379 p~ds~dp~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred cccccCcchhccceeccccc-eeeeeecccccceeeecCCceEEeeccCCc
Confidence 11111 1112223576654 899999999999999999999999998654
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.61 E-value=8e-07 Score=93.98 Aligned_cols=90 Identities=19% Similarity=0.341 Sum_probs=66.2
Q ss_pred CCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 247 VGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 247 dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
...|.|.|++.. .+++.+++|.+.|+.|+|.| +...|+||++|-. +.|||+..-...+. . +--..|+.
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~--~----dPilay~a--- 334 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENG--E----DPILAYTA--- 334 (364)
T ss_pred CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCC--C----Cchhhhhc---
Confidence 357889999864 68899999999999999999 5679999999854 89999986421010 0 01122331
Q ss_pred CCcccEEEEEEcC-CCCEEEEEeCC
Q 004015 325 LTNAVIQDISFSD-DSNWIMISSSR 348 (779)
Q Consensus 325 ~t~a~I~sIaFSp-Dg~~LAtgS~D 348 (779)
.+.|..|.|++ ...|||++...
T Consensus 335 --~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 335 --GGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred --cceeeeeeecccCCCEEEEEecC
Confidence 24699999984 78899998764
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.9e-07 Score=105.98 Aligned_cols=180 Identities=18% Similarity=0.276 Sum_probs=127.9
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
..|.|+.|..+....-|+ -++.|..+.|. .-.+.|+....|+|||+...+.+.++.+. |
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg-----~------------- 607 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG-----S------------- 607 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC-----C-------------
Confidence 678899997776544342 26889999995 66788888999999999988777777552 1
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
+||..-+ ++| .|.
T Consensus 608 ----kwiS~ms----------ihp--------------~GD--------------------------------------- 620 (733)
T KOG0650|consen 608 ----KWISSMS----------IHP--------------NGD--------------------------------------- 620 (733)
T ss_pred ----eeeeeee----------ecC--------------CCC---------------------------------------
Confidence 2332210 000 111
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++-++.++.+..||+.- .++.++++-|...|++++|.+.=-|+|+||.||+ +.||.-+
T Consensus 621 -------------------nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~ 680 (733)
T KOG0650|consen 621 -------------------NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGM 680 (733)
T ss_pred -------------------eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeee
Confidence 123346788898999874 4688899999999999999999999999999998 7888644
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcc---cEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNA---VIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a---~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
-. ..- -.+.....+.+| ||+... -|.+++|.|.--||.+++.||||++|
T Consensus 681 VY-~Dl----~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 VY-NDL----LQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ee-hhh----hcCCceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 32 000 001123455555 454322 28899999999999999999999998
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.60 E-value=9.6e-07 Score=94.63 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=60.0
Q ss_pred EEEEeccCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 260 VIAQFRAHKSPISALCF--DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaF--SPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
.+.+|.-....|.-|.| +|-+++||.+...|. +.+||+....+.. .-.++ .-.+ .+.|+..+||.
T Consensus 297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~--------~ttl~-~s~~---~~tVRQ~sfS~ 363 (385)
T KOG1034|consen 297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK-VYVWDLDNNEPPK--------CTTLT-HSKS---GSTVRQTSFSR 363 (385)
T ss_pred eeeEeccCccceEEEEEeecHHHHHHhhccCCCc-EEEEECCCCCCcc--------CceEE-eccc---cceeeeeeecc
Confidence 34555555567777665 556999999999997 8999998752111 00111 1112 34599999999
Q ss_pred CCCEEEEEeCCCeEEEEec
Q 004015 338 DSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl 356 (779)
||.+|+...+|+||--||.
T Consensus 364 dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 364 DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCcEEEEEeCCCcEEEEEe
Confidence 9999999999999998885
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.60 E-value=1.4e-06 Score=101.40 Aligned_cols=99 Identities=9% Similarity=0.238 Sum_probs=80.0
Q ss_pred CCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~-s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
..|.+|+||.-. ...++..+..+...|++++|||. -..+|+++.||+ |.|||+.....++ +.+..
T Consensus 417 ~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~~P------------v~s~~ 483 (555)
T KOG1587|consen 417 VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDEEP------------VLSQK 483 (555)
T ss_pred eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhccccCC------------ccccc
Confidence 448999999998 77889999999999999999996 568999999998 8999998652222 12222
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.+ ......+.|+++|+.||+|...|++|+|++..
T Consensus 484 ~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 VC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 22 23367888999999999999999999999964
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.7e-07 Score=101.29 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=92.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC--C--C--------
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT--S--S-------- 307 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~--~--s-------- 307 (779)
.++.+..||++|||+..+...+..+.+|...|.+|.|||||++||+-+.| . .+||++.++.... + +
T Consensus 158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~-~~VW~~~~g~~~a~~t~~~k~~~~~~c 235 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-S-ARVWSVNTGAALARKTPFSKDEMFSSC 235 (398)
T ss_pred EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-c-eEEEEeccCchhhhcCCcccchhhhhc
Confidence 46777899999999999998899999999999999999999999999999 3 7999999873211 1 0
Q ss_pred ccCCCC--ceeEEE--------------EeecC---------CC-cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 308 ACDAGT--SYVHLY--------------RLQRG---------LT-NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 308 ~~~~~~--s~~~l~--------------~l~rG---------~t-~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.++... ....+. .+..+ .. ...|.+++-|+||+++|.|+.||.|-|++...-..
T Consensus 236 RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 236 RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence 000000 000111 01111 00 11388999999999999999999999999987654
Q ss_pred ceee-ccCC
Q 004015 362 SVNF-QPTD 369 (779)
Q Consensus 362 ~~~~-~~H~ 369 (779)
..-+ +.|.
T Consensus 316 ~~~vk~aH~ 324 (398)
T KOG0771|consen 316 LQYVKEAHL 324 (398)
T ss_pred eEeehhhhe
Confidence 4433 4563
No 181
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.56 E-value=1.9e-06 Score=98.58 Aligned_cols=94 Identities=10% Similarity=0.138 Sum_probs=59.8
Q ss_pred eccCCCCeEE---EEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 264 FRAHKSPISA---LCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 264 f~aHt~~Isa---LaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
-++|...|.. +-|.-|..+||||+. |+. |+|||++........ ++.......+.-. ....+.+++....|
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~-iKVWDLRk~~~~~r~--ep~~~~~~~t~sk---rs~G~~nL~lDssG 283 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADST-IKVWDLRKNYTAYRQ--EPRGSDKYPTHSK---RSVGQVNLILDSSG 283 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcc-eEEEeeccccccccc--CCCcccCccCccc---ceeeeEEEEecCCC
Confidence 3466666666 677788889999999 887 999999875210000 0000000001100 01126677777778
Q ss_pred CEEEEEeCCCeEEEEecCCCCCce
Q 004015 340 NWIMISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~gg~~ 363 (779)
.+|.+...|++|+.|++...+.-+
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCc
Confidence 999999999999999998765443
No 182
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.53 E-value=1.2e-07 Score=106.34 Aligned_cols=93 Identities=18% Similarity=0.301 Sum_probs=67.8
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCC
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 338 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD 338 (779)
.++..+.--.++|...+|||||++||+.|.||. +||||..+. +|.-+-+.. -+-..|+|||||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~---------------eLlg~mkSY-FGGLLCvcWSPD 343 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQ---------------ELLGVMKSY-FGGLLCVCWSPD 343 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHH---------------HHHHHHHhh-ccceEEEEEcCC
Confidence 455544444568999999999999999999997 899998753 111111111 122789999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 339 SNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 339 g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
|+||++|+.|--|.||.+....-...-++|
T Consensus 344 GKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred ccEEEecCCcceEEEEEeccceEEEecccc
Confidence 999999999999999999765322222455
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=3.9e-06 Score=95.32 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=60.0
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 250 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 250 V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS-~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
|.+||+.++. +..+..|...+...+|+|||+.|+.++ .+|. .+||++... +. . ..+ + +.. .
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~--~~--------~-~~~--l--~~~-~ 335 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSAS--GG--------G-ASL--V--GGR-G 335 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECC--CC--------C-eEE--e--cCC-C
Confidence 5556776665 355666777888999999999877665 4566 799987542 00 1 111 1 111 1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 329 VIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..++|||||++|+.++.++. .+||+...
T Consensus 336 --~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g 363 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDNV-VKQDLTSG 363 (429)
T ss_pred --CCccCCCCCCEEEEEcCCCE-EEEECCCC
Confidence 35789999999999888764 45898664
No 184
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3.4e-06 Score=92.15 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=88.2
Q ss_pred cccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.|++...-+.|++||.+.+ ++++.|.--..+|+++...|+|+++.+|...|. +..||++.+ .++
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~--------------kl~ 282 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGG--------------KLL 282 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCc--------------eee
Confidence 3455556689999999865 689999888899999999999999999999997 899999875 333
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
-....|.+ ..|.+|...|..++||+++.|+-++|||+.+.+-.
T Consensus 283 g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 283 GCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 33334554 34999999999999999999999999999885443
No 185
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.51 E-value=3.6e-06 Score=85.84 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=41.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEeCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-----GHNINIFKII 299 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-----Gt~I~Vwdi~ 299 (779)
.|.|.+||+.+.+.+.+++.. .++.++|||||++|+|+... .+.++||+..
T Consensus 124 ~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 124 NGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 478999999999988887543 47899999999999999763 2348899864
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=6.5e-06 Score=98.52 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=79.8
Q ss_pred ccccCCCCeEEEEECCCC---cEEEEeccCCCC--eEEEEEcCCCCE-EEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 241 FPDADNVGMVIVRDIVSK---NVIAQFRAHKSP--ISALCFDPSGIL-LVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~--IsaLaFSPdG~l-LATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
++.+-.||.|++||.+.. ..+...+.|... |..+.|.+.|-- |++||.+|. |.+||++.....+ -
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~--------~ 1294 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKET--------F 1294 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccc--------c
Confidence 456678999999998853 467888999987 999999998875 999999997 9999998631000 1
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
....+....|. .++++...++...+|+|+. +.|+||++.
T Consensus 1295 ~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1295 LTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 11122222242 2678999999999999999 999999995
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.3e-06 Score=96.11 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 268 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 268 t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
...|++|+.|+||+++|-|+.||. |-|++...- +.++-.++.| ...|+++.|+||.+++++.|.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l--------------q~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL--------------QRLQYVKEAH-LGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCc-EEEEEecee--------------eeeEeehhhh-eeeeeeEEEcCCcCccccccc
Confidence 358999999999999999999997 899998753 4445444443 235999999999999999999
Q ss_pred CCeEEEEecCC
Q 004015 348 RGTSHLFAINP 358 (779)
Q Consensus 348 DGTVhIwdl~~ 358 (779)
|.+++|..|.-
T Consensus 345 ~~~~~v~~l~v 355 (398)
T KOG0771|consen 345 DNEAAVTKLAV 355 (398)
T ss_pred CCceeEEEEee
Confidence 99999999854
No 188
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.47 E-value=2.7e-06 Score=94.42 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=76.9
Q ss_pred cccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 240 HFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
.+++++.|++++|||++.-. ++-..-.|+.+|.+..|||+|-.|+|.+.|.+ |+|||..- .+. -..+....
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~--~sa--~~~p~~~I 411 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSC--ISA--KDEPLGTI 411 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeeccc--ccc--cCCcccee
Confidence 46778899999999998632 34455689999999999998777999999976 99999741 000 00001111
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.|-...-|-. .....+|.||..+|++|-.-..|-||+-+
T Consensus 412 ~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 412 PHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eccCcccccc---cchhheeCCCccEEEEeccCcceeEEcCC
Confidence 2211111111 14578999999999999999999998865
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.46 E-value=1.2e-06 Score=98.74 Aligned_cols=61 Identities=11% Similarity=0.324 Sum_probs=55.3
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
+++.-+.||.++|||+.+.+++..++..-+...|++|||||+|+|||++|. .|.||.+...
T Consensus 304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~er 364 (636)
T KOG2394|consen 304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEER 364 (636)
T ss_pred eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEeccc
Confidence 566778999999999999999999998889999999999999999999995 6999998753
No 190
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=2.6e-05 Score=88.65 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=61.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEE--eCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vw--di~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++. +|. ..|| ++..+ ....+ .+. +
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~-~~iy~~dl~~g------------~~~~l-t~~-g 335 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR-PQIYRVAASGG------------SAERL-TFQ-G 335 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECCCC------------CeEEe-ecC-C
Confidence 4689999988764 456666666678999999999887775 343 4455 44332 12222 221 2
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCC---eEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRG---TSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~~ 359 (779)
.....++|||||++|+..+.++ .|.+|++...
T Consensus 336 ---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 336 ---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred ---CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 1234689999999999876543 5888888543
No 191
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.44 E-value=1.2e-06 Score=100.87 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=66.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..|++|.||...+..++.+|++|.+.|.||....+++ |+|+|.|.| ++||.+.. ..+.+ .
T Consensus 77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T-akvW~~~~----------------l~~~l-~ 137 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST-AKVWRIGE----------------LVYSL-Q 137 (745)
T ss_pred ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccc-eEEecchh----------------hhccc-C
Confidence 34566777777777777777777777777777777777 777777766 67776543 12333 3
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
|++ +.||.+++=|+. .+.+||.|.+|++|.= .....+|.+|++-
T Consensus 138 gH~-asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~ 181 (745)
T KOG0301|consen 138 GHT-ASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDC 181 (745)
T ss_pred Ccc-hheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhh
Confidence 433 446777766666 4457777777777765 2334456666543
No 192
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=5e-05 Score=86.42 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=54.1
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG--t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.++|+.+++.. .+.-+......++|||||++|+..+.++ ..|.+||+.++ ... .+..+.
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g------------~~~---~Lt~~~- 379 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG------------SVR---TLTPGS- 379 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC------------CeE---ECCCCC-
Confidence 3556666665432 2222223445689999999998766543 24788998654 111 222221
Q ss_pred cccEEEEEEcCCCCEEEEEeCC-Ce--EEEEec
Q 004015 327 NAVIQDISFSDDSNWIMISSSR-GT--SHLFAI 356 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D-GT--VhIwdl 356 (779)
.....+|||||++|+..+.+ +. +.++++
T Consensus 380 --~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 380 --LDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 23467999999998887764 33 555555
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.1e-05 Score=83.73 Aligned_cols=112 Identities=13% Similarity=0.254 Sum_probs=75.1
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE-cCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF-DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaF-SPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+..|+.+.-||+.+++...+|++|++.|-++.- +.+|+ ++||++||+ +||||.+++..-.. -+ .+.+ ..+
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt-vRvWd~kt~k~v~~--ie---~yk~-~~~ 202 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT-VRVWDTKTQKHVSM--IE---PYKN-PNL 202 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCcc-EEEEeccccceeEE--ec---cccC-hhh
Confidence 3457899999999999999999999999999998 56665 679999998 89999998610000 00 0000 011
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.|-+....|-++ .-+..|++.|.. ....+|.+........|
T Consensus 203 lRp~~g~wigal--a~~edWlvCGgG-p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 203 LRPDWGKWIGAL--AVNEDWLVCGGG-PKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcccCceeEEE--eccCceEEecCC-CceeEEeccCCCceEEE
Confidence 232222235444 445669887764 45788999776554443
No 194
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.8e-07 Score=66.28 Aligned_cols=38 Identities=29% Similarity=0.680 Sum_probs=36.1
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
+++.+|++|.++|.+|+|+|++.+|||++.|++ |+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 578999999999999999999999999999987 99997
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.37 E-value=5.3e-06 Score=87.82 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=75.3
Q ss_pred cccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCC-------CCccCCC
Q 004015 242 PDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGT-------SSACDAG 312 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~-------~s~~~~~ 312 (779)
++...||.|+|||.+. ..++..+.+|+.-|.++.|+|. .++|+|++.|.. |.+|-...-.... .+.....
T Consensus 231 vt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~svSSE~qi~~~~dese~e~~ 309 (370)
T KOG1007|consen 231 VTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASSVSSEQQIEFEDDESESEDE 309 (370)
T ss_pred EEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccccccccccccccccccCcch
Confidence 4456789999999985 5689999999999999999996 678899999976 7888643321000 0000000
Q ss_pred CceeEEEEeecC----CC--cccEEEEEEcCCCCE-EEEEeCCCeEEEEecCC
Q 004015 313 TSYVHLYRLQRG----LT--NAVIQDISFSDDSNW-IMISSSRGTSHLFAINP 358 (779)
Q Consensus 313 ~s~~~l~~l~rG----~t--~a~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~ 358 (779)
.+.....-|.-| .. .-.|++++||.-.-| ||+-|.||.+.|=.+.+
T Consensus 310 dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 310 DSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 011110111111 11 123999999876666 56668899999876654
No 196
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=3.6e-05 Score=87.52 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=52.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG--t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.+||+.++.. ..+..+...+....|||||++||..+.++ ..|.+||+..+ . .. .+..+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~------------~-~~--~lt~~-- 376 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS------------G-ER--ILTSG-- 376 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC------------c-eE--eccCC--
Confidence 577788776654 33333455677789999999998876543 24666776432 1 11 12122
Q ss_pred cccEEEEEEcCCCCEEEEEeCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..+.+.+|||||++|+..+.+
T Consensus 377 -~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 377 -FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred -CCCCCCeECCCCCEEEEEEcc
Confidence 136789999999999887664
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=2.2e-05 Score=85.28 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=73.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+..|+|||..++..+....---+.++-|+|||||.+|..|..|+. ++||+.... +. ...+.+-
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav-frlw~e~q~--wt----------~erw~lg--- 279 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV-FRLWQENQS--WT----------KERWILG--- 279 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce-eeeehhccc--ce----------ecceecc---
Confidence 3467999999998766555444578999999999999999999986 999965432 11 1122332
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
...|+..+|||+|++|..+.. |.-+||.+.-.+....+
T Consensus 280 -sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 280 -SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVF 317 (445)
T ss_pred -CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccc
Confidence 236999999999999987765 45567888665554444
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=6.5e-05 Score=85.55 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=61.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
.|.+||+.+++.. .+..+...+...+|+|||+.|+.++.++...+||.+... . +....+ ... + .
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~---------g~~~~l-t~~-~---~ 331 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-G---------GAPQRI-TWE-G---S 331 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-C---------CCeEEe-ecC-C---C
Confidence 5888999887654 444445577889999999998877765433567754321 0 012222 111 1 1
Q ss_pred cEEEEEEcCCCCEEEEEeCCC---eEEEEecCCC
Q 004015 329 VIQDISFSDDSNWIMISSSRG---TSHLFAINPL 359 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~~ 359 (779)
...+.+|||||++|+..+.++ .+.+||+...
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 256789999999998876543 4677777553
No 199
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=5.2e-05 Score=86.19 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=60.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
.|.++|+.++. +..+..|...+....|+|||+.|+..+..+....||.+... + +....+ .+. +.
T Consensus 265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~--~--------g~~~~l-t~~-g~--- 328 (427)
T PRK02889 265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS--G--------GAAQRV-TFT-GS--- 328 (427)
T ss_pred eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC--C--------CceEEE-ecC-CC---
Confidence 35555665554 45555566566778999999998877764323678876432 0 012222 222 21
Q ss_pred cEEEEEEcCCCCEEEEEeCCC---eEEEEecCCC
Q 004015 329 VIQDISFSDDSNWIMISSSRG---TSHLFAINPL 359 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~~ 359 (779)
.....+|||||++||..+.++ .|.+|++...
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 134678999999999887765 5899998664
No 200
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00012 Score=83.43 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=60.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.+||+.++.. ..+..|.......+|+|||+.|+.++.. |. .|.+||+..+ ..+.+. .+
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~------------~~~~lt---~~- 332 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS------------NPRRIS---FG- 332 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC------------CeEEee---cC-
Confidence 3577889887765 4566666667789999999999887753 32 3566675543 122222 11
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC---eEEEEecC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAIN 357 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~ 357 (779)
...+...+|||||++|+..+.++ .+.+|++.
T Consensus 333 -~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 333 -GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred -CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 12255788999999999887643 46666653
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=5.2e-06 Score=89.51 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=77.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEe--ccCC-CCeEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 243 DADNVGMVIVRDIVSKNVIAQF--RAHK-SPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f--~aHt-~~IsaLaFSPdG~lLATaS~DG---t~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++..||.|++||+++...++.+ .+|. .+-.|++.+-.+.+++++...- -.+.+||++... +
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-------------q 155 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-------------Q 155 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc-------------c
Confidence 4567899999999987655544 4676 5778888888899999986632 248899998740 1
Q ss_pred EEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 317 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.+..+... +.-.|++++|.| |-..|++||.||-|-|||++.....
T Consensus 156 ~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 156 LLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred hhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 12222222 223599999999 6789999999999999999875443
No 202
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=7e-06 Score=87.58 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=84.0
Q ss_pred cccccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~----~~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
++++.+.|++|+|||+.+. .+-...++|.++|..+.|-+- |+.+|++|.|++ +.||.=....... .+.
T Consensus 27 RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~~~~~~~-----~~~ 100 (361)
T KOG2445|consen 27 RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQEKSEEA-----HGR 100 (361)
T ss_pred eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeeccccccc-----ccc
Confidence 4566778999999997643 577889999999999999664 999999999998 8999753220000 000
Q ss_pred ceeEEEEeecCCCcccEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSp--Dg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.-....++. .....|++|+|+| -|-.+|+++.||+++||+.-.......+
T Consensus 101 ~Wv~~ttl~--DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 101 RWVRRTTLV--DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred eeEEEEEee--cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 111122221 1123499999998 5788999999999999998765544444
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.27 E-value=0.00025 Score=79.57 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=113.5
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE-EEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY-SVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~-sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|.|+|..|.+.+.++.....+. .+.++ ++++.+ +.++.|.++|+.+++.+.++..... |
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---------------~ 80 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---------------P 80 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------------E
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------------c
Confidence 569999999999999999766554 46665 465544 6789999999999999999965321 1
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+-+|++. +|+++..
T Consensus 81 -----~~i~~s~---------------------------DG~~~~v---------------------------------- 94 (369)
T PF02239_consen 81 -----RGIAVSP---------------------------DGKYVYV---------------------------------- 94 (369)
T ss_dssp -----EEEEE-----------------------------TTTEEEE----------------------------------
T ss_pred -----ceEEEcC---------------------------CCCEEEE----------------------------------
Confidence 1123321 3332210
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC-------CCCeEEEEEcCCCCEEEEEeCCCCE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH-------KSPISALCFDPSGILLVTASVQGHN 292 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH-------t~~IsaLaFSPdG~lLATaS~DGt~ 292 (779)
....++.|.|+|..+.++++++... ...+.+|..+|....++.+-.|...
T Consensus 95 -----------------------~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 95 -----------------------ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp -----------------------EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred -----------------------EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 0123568999999999999988743 3468899999999988777777543
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCCceee
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~gg~~~~ 365 (779)
|-+-|.... .......+..+. ...+..|+||++|++++ ..+..+-++|..+......+
T Consensus 152 I~vVdy~d~------------~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 152 IWVVDYSDP------------KNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEETTTS------------SCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEeccc------------cccceeeecccc---cccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 555564432 012222333332 36799999999997664 56779999998875443333
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.27 E-value=2.2e-06 Score=98.11 Aligned_cols=145 Identities=14% Similarity=0.256 Sum_probs=107.7
Q ss_pred CEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecCceeEeeCCCceecCCCcc
Q 004015 85 PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRV 162 (779)
Q Consensus 85 ~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrv 162 (779)
.|++|+|. +.-|+++.+.++++||...+..++++++|.... + .+||+-
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtV------------y-------cVAys~----------- 63 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTV------------Y-------CVAYAK----------- 63 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceE------------E-------EEEEcc-----------
Confidence 68899994 667888888999999999999999999986421 1 235541
Q ss_pred CCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCCCccCCccc
Q 004015 163 NPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP 242 (779)
Q Consensus 163 spq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~ 242 (779)
+|. .|+
T Consensus 64 ----------------dGk----------------------------------------------------------rFA 69 (1081)
T KOG1538|consen 64 ----------------DGK----------------------------------------------------------RFA 69 (1081)
T ss_pred ----------------CCc----------------------------------------------------------eec
Confidence 221 234
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
++..|..|.||.-+-...++ -.|+..|.||.|+|=...|||++-.. +-+|....- ++. + +
T Consensus 70 SG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK------------~V~---K-~ 129 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQK------------SVS---K-H 129 (1081)
T ss_pred cCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchhh--ccccChhhh------------hHH---h-h
Confidence 45667889999765433322 27999999999999999999999863 788875432 111 1 1
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+ ..++|.+++|..||+|||.|-.+|||.|-+
T Consensus 130 k--ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 130 K--SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred h--hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 1 235688999999999999999999999873
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=1.1e-05 Score=96.77 Aligned_cols=106 Identities=13% Similarity=0.226 Sum_probs=76.6
Q ss_pred cccccCCCCeEEEEECCCCc--EEEEeccCC--C-CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 240 HFPDADNVGMVIVRDIVSKN--VIAQFRAHK--S-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~--~v~~f~aHt--~-~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.+++++.+|.|++||++... ..-++..|. + ..++|...++..++|+|+. + .|+||++.-...
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~G~~l----------- 1337 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLSGEQL----------- 1337 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecChhhh-----------
Confidence 35567889999999999742 223344555 4 5999999999999999998 4 499999864210
Q ss_pred eeEEEEeecCC---CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 315 YVHLYRLQRGL---TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 315 ~~~l~~l~rG~---t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
...+...++ ....+.|++|.|---.+|+|+.|.+|-||...+.+
T Consensus 1338 --~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 --NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred --cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 011111111 11236899999999999999999999999987653
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00016 Score=82.25 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 271 ISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~DGt--~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
....+|||||++||.++.++. .|.+||+..+ ... .+..+ ....+.+|||||++|+.++.+
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g------------~~~---~lt~~---~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG------------QVT---ALTDT---TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC------------CeE---EccCC---CCccCceECCCCCEEEEEEec
Confidence 345789999999998776542 4788898764 112 22122 124578999999999988865
Q ss_pred C-eEEEEecCCCC
Q 004015 349 G-TSHLFAINPLG 360 (779)
Q Consensus 349 G-TVhIwdl~~~g 360 (779)
+ .-.+|-+...+
T Consensus 392 ~g~~~l~~~~~~g 404 (427)
T PRK02889 392 GGRSVLAAVSSDG 404 (427)
T ss_pred CCCEEEEEEECCC
Confidence 4 33444443333
No 207
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.23 E-value=0.00036 Score=77.14 Aligned_cols=85 Identities=18% Similarity=0.380 Sum_probs=60.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec-CCCcccEEEEEEcCCCCEEEEEe-C
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR-GLTNAVIQDISFSDDSNWIMISS-S 347 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r-G~t~a~I~sIaFSpDg~~LAtgS-~ 347 (779)
....|+++|||++|..+......|-+|++... .+.+..+..+.. |. .-..++|+|||+||+++. .
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~----------~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA----------TGTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT----------TTTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC----------CCceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecC
Confidence 57889999999999888877677999999542 112333333333 32 268999999999999987 5
Q ss_pred CCeEEEEecCCCCCceeecc
Q 004015 348 RGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 348 DGTVhIwdl~~~gg~~~~~~ 367 (779)
+++|.+|++....|......
T Consensus 313 s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEec
Confidence 67999999987767665543
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.21 E-value=7.8e-06 Score=85.73 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=53.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
++++.-||.||||..++..+++.++-|...|++|+|+||..++|.||.|++ |-+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 466778999999999999999999999999999999999999999999987 899986
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.21 E-value=4.4e-06 Score=97.89 Aligned_cols=245 Identities=16% Similarity=0.179 Sum_probs=140.2
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC-c-EEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS-R-VVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~-r-lLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+.|+||++.++.++.+++. .+.|.+++.+. + ++| .+.|.-|++|-+.++..+..|.+|... +.
T Consensus 211 d~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga------------vt 278 (1113)
T KOG0644|consen 211 DRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA------------VT 278 (1113)
T ss_pred cceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc------------ee
Confidence 57899999999999999986 67899999962 3 333 367788999999999988888777421 12
Q ss_pred ceeecCceeEeeCCC-ceecCCCccCCcccccccccccccCCCcceeeeecccc-cchhceeeecCCccccccccccccc
Q 004015 139 PLAVGPRWLAYSGSP-VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS-KHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgpRwLAyas~~-~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~s-K~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.++++|+- +.++.. +-.| ..|+.|....+.+. ....++++.+--.+.. -..++|.. .++..
T Consensus 279 aiafsP~~-sss~dgt~~~w-d~r~~~~~y~prp~---~~~~~~~~~s~~~~~~~~~f~Tgs~-d~ea~----------- 341 (1113)
T KOG0644|consen 279 AIAFSPRA-SSSDDGTCRIW-DARLEPRIYVPRPL---KFTEKDLVDSILFENNGDRFLTGSR-DGEAR----------- 341 (1113)
T ss_pred eeccCccc-cCCCCCceEec-cccccccccCCCCC---CcccccceeeeeccccccccccccC-Ccccc-----------
Confidence 23334322 111111 1112 11222211111110 0011111111000000 00000000 00000
Q ss_pred cCCCcCccccccCCCCCCCc--------cCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEe
Q 004015 217 LPDSQNSLQSAIPGGKSNGT--------VNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTAS 287 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~--------v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS 287 (779)
........++.+++ .+...+.+-.+-.+.+|++.++..+..+.+|..++..|.|.| +-++..+|+
T Consensus 342 ------n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 342 ------NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred ------cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence 00000000011110 011112334556778899999999999999999999999999 555667899
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.||. +.|||+-.+ .-...|. .| ..++.+..||+||+.++..-+.|-+.|+.....
T Consensus 416 ~dgs-t~iwdi~eg------------~pik~y~--~g--h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 416 YDGS-TIIWDIWEG------------IPIKHYF--IG--HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred CCCc-eEeeecccC------------Ccceeee--cc--cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 9998 789999876 1123343 33 245889999999999999999999999776443
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.00013 Score=86.47 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=82.2
Q ss_pred ccccCCCCeEEEEECCC--C--cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 241 FPDADNVGMVIVRDIVS--K--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s--~--~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++.+..+|.|.||.--. + .....|.=|..+|++|+|++||.+|.||+..|- +-+|.+.++ ..+
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~------------~kq 286 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETG------------KKQ 286 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceE-EEEEeecCC------------Ccc
Confidence 34566789999985332 1 233556678899999999999999999999985 789999875 112
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.|-+| .+.|..+.+|||+.+.+....|..||+-...+-....++.
T Consensus 287 fLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 287 FLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred ccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence 23332 3569999999999999999999999998886654444443
No 211
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.18 E-value=9.3e-05 Score=78.71 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=84.6
Q ss_pred ccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 243 DADNVGMVIVRDIVSKN---VIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~---~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+.+-|-+..|||+.++. +..++-||..+|..++|...|. ++|+.+.||. +|+||++.- ..+ ..+
T Consensus 168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS-vRmFDLR~l-eHS----------TII 235 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS-VRMFDLRSL-EHS----------TII 235 (364)
T ss_pred eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc-EEEEEeccc-ccc----------eEE
Confidence 34556789999999863 4667889999999999999776 8899999997 899999864 000 123
Q ss_pred EEeecCCCcccEEEEEEcC-CCCEEEEEeCCC-eEEEEecCCCCCce-eeccCCCC
Q 004015 319 YRLQRGLTNAVIQDISFSD-DSNWIMISSSRG-TSHLFAINPLGGSV-NFQPTDAN 371 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DG-TVhIwdl~~~gg~~-~~~~H~~~ 371 (779)
|+ -.........++|++ |-+|+|+-..|. .|.|-|+.-..-++ .++.|...
T Consensus 236 YE--~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~ 289 (364)
T KOG0290|consen 236 YE--DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS 289 (364)
T ss_pred ec--CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc
Confidence 32 233345688999988 667888877664 69999997765554 56888433
No 212
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.18 E-value=0.00017 Score=80.63 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=55.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt--~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.++|+.+++. ..+..+...+..+.|+|||++|+.++.++. .|.+||+..+ ... .+...
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~------------~~~---~l~~~-- 364 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG------------GER---VLTDT-- 364 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC------------CeE---EccCC--
Confidence 577778776654 334445556778899999999998887652 3667776643 111 11111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEE
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSH 352 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVh 352 (779)
......+|+|||++|+..+.++...
T Consensus 365 -~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 365 -GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred -CCCCCceECCCCCEEEEEEeCCCcE
Confidence 1134578999999999888876433
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.14 E-value=1.4e-06 Score=101.85 Aligned_cols=97 Identities=22% Similarity=0.351 Sum_probs=84.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++++..|-.|+||...+..+++..++|.+.|+.++.+....++|+||.|. +|+||.+..+ . ..
T Consensus 204 ~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~-vIrvWrl~~~--------------~-pv 267 (1113)
T KOG0644|consen 204 YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDK-VIRVWRLPDG--------------A-PV 267 (1113)
T ss_pred eEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCc-eEEEEecCCC--------------c-hH
Confidence 346678889999999999999999999999999999999999999999996 5999999876 1 22
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.+-||++.+ |+.|+|||- ++++.|||+++||..
T Consensus 268 svLrghtga-vtaiafsP~----~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 268 SVLRGHTGA-VTAIAFSPR----ASSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHhccccc-eeeeccCcc----ccCCCCCceEecccc
Confidence 344787755 999999995 488999999999986
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=4.6e-06 Score=94.14 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=71.5
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC--
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-- 337 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-- 337 (779)
..+.+.+|++=|+||.|+.||.+||+||+|-+ +.|||.... +.+..++.|++ +.|.++-|=|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r-~ivWd~~~~--------------KllhsI~TgHt-aNIFsvKFvP~t 105 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTR-LIVWDPFEY--------------KLLHSISTGHT-ANIFSVKFVPYT 105 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcce-EEeecchhc--------------ceeeeeecccc-cceeEEeeeccC
Confidence 34678899999999999999999999999966 899997643 55667777865 5699999988
Q ss_pred CCCEEEEEeCCCeEEEEecCC
Q 004015 338 DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
..+.|++|..|..|+|||+..
T Consensus 106 nnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred CCeEEEeccCcceEEEEeccc
Confidence 567899999999999999985
No 215
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.10 E-value=9.8e-05 Score=86.37 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=74.3
Q ss_pred cccccCCCCeEEEEECCCC--------cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCC
Q 004015 240 HFPDADNVGMVIVRDIVSK--------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~--------~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
+|+-+...|.|.--+-... +.+.++..|-++|.++.|+|=+..+..++.|.+ ++||.-...
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~---------- 430 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVI---------- 430 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCC----------
Confidence 4566777888766332221 335677899999999999997776665555776 899986522
Q ss_pred CCceeEEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCC
Q 004015 312 GTSYVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 312 ~~s~~~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~gg 361 (779)
...++.+.+. ...|++++|||-- ..||++..||.+.||||.....
T Consensus 431 ---~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 431 ---ASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred ---CCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 1234444432 2349999999954 5788889999999999976433
No 216
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.08 E-value=7.4e-05 Score=86.64 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=78.1
Q ss_pred cCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEEcCCCC---EEEEEeCCCCEEEEEeCCCCCCCC-CCccCC------
Q 004015 244 ADNVGMVIVRDIV--SKNVIAQFRAHKSPISALCFDPSGI---LLVTASVQGHNINIFKIIPGILGT-SSACDA------ 311 (779)
Q Consensus 244 ~~~dG~V~VwDl~--s~~~v~~f~aHt~~IsaLaFSPdG~---lLATaS~DGt~I~Vwdi~~~~~g~-~s~~~~------ 311 (779)
+..+-.|.||.-. +.+.++.+++|++.|..|+|..-|. +|||+|.|.. ||||.+...-... -...+.
T Consensus 165 Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y-IRiW~i~~~~~~~~~~~e~~~t~~~~ 243 (764)
T KOG1063|consen 165 GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY-IRIWRIVLGDDEDSNEREDSLTTLSN 243 (764)
T ss_pred cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE-EEEEEEEecCCccccccccccccccC
Confidence 3444566666544 3467889999999999999998765 8899999965 9999987641000 000000
Q ss_pred CCceeEEE---------EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 312 GTSYVHLY---------RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 312 ~~s~~~l~---------~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
......+. .+.-|+. ..|+++-|+|++..|.++|.|.|+.||.-....|.
T Consensus 244 ~~~f~~l~~i~~~is~eall~GHe-DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi 302 (764)
T KOG1063|consen 244 LPVFMILEEIQYRISFEALLMGHE-DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI 302 (764)
T ss_pred CceeeeeeeEEEEEehhhhhcCcc-cceEEEEEccchhhheecccCcceEEEecCCccce
Confidence 00001111 1223544 34999999999999999999999999987665443
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.07 E-value=3.8e-05 Score=86.01 Aligned_cols=106 Identities=21% Similarity=0.355 Sum_probs=78.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
...+|.|.|.|..+.+++..|......-..++|+|||++|..++.||. |.++|+.+. +.+.++.-
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~-vsviD~~~~--------------~~v~~i~~ 76 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT-VSVIDLATG--------------KVVATIKV 76 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE-EEEEETTSS--------------SEEEEEE-
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe-EEEEECCcc--------------cEEEEEec
Confidence 346789999999999999999876555456889999999999999986 899999875 45566665
Q ss_pred CCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeecc
Q 004015 324 GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|.. -.++++|+||+|++++. ..+++.|+|..+......+.+
T Consensus 77 G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 77 GGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred CCC---cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 642 56899999999999886 689999999988765555543
No 218
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.05 E-value=0.0043 Score=69.22 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCeEEEEECCCC-----cEEEEecc-------CCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCC
Q 004015 247 VGMVIVRDIVSK-----NVIAQFRA-------HKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGT 305 (779)
Q Consensus 247 dG~V~VwDl~s~-----~~v~~f~a-------Ht~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~ 305 (779)
.|.|.+.|+... +.+..+.. ..+.+.-++|+|+|+.|..+.. -++.|-++|..++
T Consensus 214 eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---- 289 (352)
T TIGR02658 214 TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---- 289 (352)
T ss_pred CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----
Confidence 399999996443 33333321 1223445999999998877431 1245888888765
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEe-CCCeEEEEecCCCCCceee
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS-~DGTVhIwdl~~~gg~~~~ 365 (779)
+.+.++.-| ..+..|+||||++ +|.+.+ .+++|.|+|..+.....++
T Consensus 290 ----------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 290 ----------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ----------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 455555544 3588999999999 777676 5899999999876544443
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.04 E-value=0.001 Score=71.66 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCCC-eEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC---CCccCCC------
Q 004015 245 DNVG-MVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT---SSACDAG------ 312 (779)
Q Consensus 245 ~~dG-~V~VwDl~s~~~v~~f~aH--t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~---~s~~~~~------ 312 (779)
+..| -|||||..+++.+..|+.= ...|.||+|||++.+||.+|+.|| ++||.++...... +|.+-..
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky 278 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKY 278 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchh
Confidence 3444 4799999999999999833 357999999999999999999998 8999998743211 1111000
Q ss_pred -CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 313 -TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 313 -~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+.+.+.+++- ......-++|-.+.+-+++...||+-+=+.+.+.
T Consensus 279 ~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 279 FSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred cccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 01111122211 0112345788888666777778898777666554
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.03 E-value=0.00058 Score=76.39 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=60.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-C-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-H-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.+||+.++.. ..+..|.......+|+|||+.|+.++.++ . .|.++++..+ ... .+..+
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~------------~~~---~l~~~- 320 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG------------EVR---RLTFR- 320 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC------------CEE---EeecC-
Confidence 3578888887654 44455555566789999999888766543 3 3555565432 112 22111
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC---eEEEEecCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAINP 358 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~ 358 (779)
...+..++|||||++|+.++.++ .|.+|++..
T Consensus 321 -~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 321 -GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred -CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 12356789999999999998876 677777754
No 221
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.02 E-value=1.8e-05 Score=84.00 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=84.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.+..++++..||+++......++ ||..-|..|.|+|+-+ +||||++||. |+|||.+.. ...+..
T Consensus 188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t-------------k~pv~e 253 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT-------------KFPVQE 253 (370)
T ss_pred EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC-------------Cccccc
Confidence 34578999999999988777776 9999999999999865 7899999998 899998863 123344
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+. + +.+.|+++.|.| -.+.|.+|++|..|.+|....-.....+
T Consensus 254 l~-~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi 297 (370)
T KOG1007|consen 254 LP-G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI 297 (370)
T ss_pred cC-C-CceEEEEEEecCccceEEEecCCCceeEEEecccccccccc
Confidence 43 3 345699999998 4578889999999999988665544444
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=7.2e-05 Score=85.24 Aligned_cols=189 Identities=16% Similarity=0.248 Sum_probs=125.6
Q ss_pred CEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CcEEEEEe-CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~-s~V~sV~~s--~rlLaVs~-d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|.=++|..|..+..+.-. +.+..|..| ..+|+++. ++.|.+||.++.....+|....++...|+. +.
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~-------~~ 227 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG-------DA 227 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccc-------cc
Confidence 34666778888888877764 678888887 56888865 899999999998877777543221111110 00
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+.++.-|.|.. +
T Consensus 228 -~~svTal~F~d---------------------------~---------------------------------------- 239 (703)
T KOG2321|consen 228 -APSVTALKFRD---------------------------D---------------------------------------- 239 (703)
T ss_pred -cCcceEEEecC---------------------------C----------------------------------------
Confidence 00000011110 0
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC--CCeEEEEEcCC--CCEEEEEeCCCCEEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK--SPISALCFDPS--GILLVTASVQGHNINI 295 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt--~~IsaLaFSPd--G~lLATaS~DGt~I~V 295 (779)
|+ +++.+...|.|.|||+++.+++.. +.|. -||..|.|.+. +..|+|. |.++++|
T Consensus 240 ---------------gL---~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~ki 298 (703)
T KOG2321|consen 240 ---------------GL---HVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKI 298 (703)
T ss_pred ---------------ce---eEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec--chHHhhh
Confidence 11 233455679999999999887643 4554 58999999887 4456654 5567999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
||-.++.+ ...+. ....|.++||=|++-+|.++...+.++.|=|..-|..+.|
T Consensus 299 Wd~~~Gk~--------------~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 299 WDECTGKP--------------MASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred cccccCCc--------------eeecc---ccCCcCceeeecCCceEEEecCCCcceeEEccccCCCchh
Confidence 99776511 11111 1234889999999999999999999999999887776655
No 223
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.96 E-value=9.7e-05 Score=83.59 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=61.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++++..|-..+|||-. ++.+.+-.+|..+|++++|+|| +++|.+|.. + .+ +..
T Consensus 201 I~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t-~R---~~~-------------------- 253 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-T-AR---FSS-------------------- 253 (737)
T ss_pred eeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-e-ee---ecC--------------------
Confidence 4556778899999976 4567777899999999999999 888777753 2 33 111
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
.+- ..|..++||+||..++.|+..|-+.+
T Consensus 254 p~~----GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 254 PRV----GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CCc----cceEEEEEcCCCceeeccccCceEEE
Confidence 111 23889999999999999999987543
No 224
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.95 E-value=0.0013 Score=74.57 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=37.0
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEe--C--CeEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--A--AQVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~--d--~~I~IwD~~T~e~ 114 (779)
..|.+||+.+|+......++..+...+|+ ++.|+.+. + ..|++||+.+++.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 46999999999865555566666678886 56666533 2 2799999998764
No 225
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.0019 Score=73.09 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=58.1
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.+||+.+++. ..+..+........|+|||+.|+..+.. |. .|.++++..+ ....+ .+ .+.
T Consensus 268 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g------------~~~~l-t~-~~~- 331 (430)
T PRK00178 268 EIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG------------RAERV-TF-VGN- 331 (430)
T ss_pred eEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEe-ec-CCC-
Confidence 578889888764 3455565566778999999988766653 33 3455565443 12222 22 121
Q ss_pred cccEEEEEEcCCCCEEEEEeCC-C--eEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSR-G--TSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D-G--TVhIwdl~~ 358 (779)
.....+|||||++|+..+.+ + .+.+||+..
T Consensus 332 --~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 332 --YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred --CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 13457899999999988754 3 366677754
No 226
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0015 Score=74.56 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=51.2
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 262 AQFRAHKSPISALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 262 ~~f~aHt~~IsaLaFSPdG~lLATaS~D-G-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
..+..+...+...+|||||+.||..+.+ | ..|.+||+..+ .... +..+ ...+.+.+|||||
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g------------~~~~---Lt~~--~~~~~~p~wSpDG 382 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG------------RDYQ---LTTS--PENKESPSWAIDS 382 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC------------CeEE---ccCC--CCCccceEECCCC
Confidence 3444455567789999999998876553 2 35788888764 1222 2122 1235689999999
Q ss_pred CEEEEEeC-C--CeEEEEecCC
Q 004015 340 NWIMISSS-R--GTSHLFAINP 358 (779)
Q Consensus 340 ~~LAtgS~-D--GTVhIwdl~~ 358 (779)
++|+..+. + ..+.+|++..
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CEEEEEECCCCCceEEEEECCC
Confidence 99886544 3 3466666643
No 227
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.90 E-value=0.0015 Score=75.09 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=34.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE--eCC--eEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAA--QVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs--~d~--~I~IwD~~T~e~ 114 (779)
..|.+||+.+|+......++....+.+|+ ++.|+++ .++ +|+++|+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 46999999998864433455555677885 5656543 233 599999988764
No 228
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00026 Score=81.10 Aligned_cols=111 Identities=9% Similarity=0.106 Sum_probs=91.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
+-+...|.|.+|++..++.-+.|. .|.+.|+++..+.+-..|-|++.|++ |-.|+.... .+..
T Consensus 74 vlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~-v~~~~~~~~--------------~~~~ 138 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK-VVYILEKEK--------------VIIR 138 (541)
T ss_pred EeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee-EEEEecccc--------------eeee
Confidence 344567899999999999988887 89999999999999999999999987 889998764 4444
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
...-+ +..+.++|.+|||+.++++| ++|++|++++..-...|.+|...
T Consensus 139 ~~~~~--~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 139 IWKEQ--KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred eeccC--CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcc
Confidence 43322 23489999999999999886 58999999999888899999543
No 229
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0013 Score=75.62 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=58.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEE--eCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt~I~Vw--di~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.|.++|+.+++. ..+..|...+...+|+|||+.|+..+.. |. ..|| |+..+ ....+ ++ .+.
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~-~~Iy~~dl~~g------------~~~~L-t~-~g~ 350 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGK-PQIYRVNLASG------------KVSRL-TF-EGE 350 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECCCC------------CEEEE-ec-CCC
Confidence 577888887754 4455566667789999999988776653 33 4555 55433 12222 22 221
Q ss_pred CcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGG 361 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg 361 (779)
.....+|||||++|+..+. ++..+||-+...++
T Consensus 351 ---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 351 ---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred ---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1345799999999988765 45566665544333
No 230
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.88 E-value=4.8e-05 Score=91.42 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+.+.--|.|.+|+......-..+.+|.+.|-++.|+-||++++|.|+|.+ +++|++.+..... ...
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~-------------~~~ 214 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLG-------------CTG 214 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccC-------------ccc
Confidence 34455688999998843333357899999999999999999999999965 9999998751100 011
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
-|+ .++|+.++|.|. .+++++.|-|+++|+.+
T Consensus 215 -fgH-saRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 215 -FGH-SARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred -ccc-cceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 243 578999999998 89999999999999553
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.00028 Score=80.54 Aligned_cols=118 Identities=9% Similarity=0.176 Sum_probs=86.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC-
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT- 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t- 326 (779)
-.|.=+++..++-+..|.-..+.++++..++--.|||+|..+|. +-.||-+.-. ..+ .......+-. +-|..
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-VEfwDpR~ks----rv~-~l~~~~~v~s-~pg~~~ 227 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-VEFWDPRDKS----RVG-TLDAASSVNS-HPGGDA 227 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCce-EEEecchhhh----hhe-eeecccccCC-Cccccc
Confidence 35667788899999999988899999999999999999999997 8999977530 000 0000000011 11222
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
...|+++.|+.||-.+|+|++.|.|.||||... .+.-+.-|...++
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELP 273 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccCCccc
Confidence 223999999999999999999999999999875 4556677765544
No 232
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.86 E-value=0.0001 Score=81.19 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=67.4
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
....+.+|...|..|+|+||+.+|++++.|.. +++||+..+ ..+..+ +.+.+.||-+||.|-+
T Consensus 115 v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns-~~l~Dv~~G--------------~l~~~~--~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 115 VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS-VRLWDVHAG--------------QLLAIL--DDHEHYVQGVAWDPLN 177 (434)
T ss_pred EEEEecccccchhhhhccCCCceeeeeeccce-EEEEEeccc--------------eeEeec--cccccccceeecchhh
Confidence 45667789999999999999999999999965 899999876 222222 2233459999999999
Q ss_pred CEEEEEeCCCeEEEEecCCC
Q 004015 340 NWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~ 359 (779)
+||++=|.|...+++.++..
T Consensus 178 qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred hhhhhhccCcccceeeeeee
Confidence 99999999998888887654
No 233
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.0002 Score=81.62 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=53.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
..+..+++|+++|..++.++....+|...+++++|.|+|-+|++++.||. +++|.+..
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~ 562 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDV 562 (577)
T ss_pred EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccc
Confidence 45678899999999999999999999999999999999999999999997 89998753
No 234
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.80 E-value=0.00041 Score=74.72 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=69.1
Q ss_pred CCCCeEEEEECCCCc---EEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCC----CCCCCccCCCCce-
Q 004015 245 DNVGMVIVRDIVSKN---VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI----LGTSSACDAGTSY- 315 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~---~v~~f-~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~----~g~~s~~~~~~s~- 315 (779)
+....|-||-+.... +-+++ +.+.+.|++|.|.|++-+||+||.|+. .+||...--. +.+.. -+..-..
T Consensus 119 Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekpap~p-Wgsk~PFG 196 (361)
T KOG1523|consen 119 SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTP-WGSKMPFG 196 (361)
T ss_pred cCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCCCCCC-CccCCcHH
Confidence 344455555554322 11223 367889999999999999999999998 7999642110 00000 0000000
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+..+. .....|..+.|||+|..||-.+.|.++.+=|....
T Consensus 197 ~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 197 QLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred HHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 1112221 12345899999999999999999999998776544
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00028 Score=77.62 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=62.4
Q ss_pred ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 243 DADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.++.-|.+..||++.++.+.. |++-+++|+.|...|.+.+||+++-|.. +||||+.+. ..++..
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktr--------------kll~kv 328 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTR--------------KLLHKV 328 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccc--------------hhhhhh
Confidence 445568889999999988776 8899999999999999999999999965 999999873 233333
Q ss_pred ecCCCcccEEEEEEcCCCCE
Q 004015 322 QRGLTNAVIQDISFSDDSNW 341 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~ 341 (779)
.- .+.+++|-|.++-.+
T Consensus 329 Yv---Ks~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 329 YV---KSRLTFILLRDDVNI 345 (412)
T ss_pred hh---hccccEEEecCCccc
Confidence 22 234677777776544
No 236
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.79 E-value=6.8e-05 Score=80.67 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=86.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--CCCCe---EEEEEcCCCCEEEEEeCCCCEEEEEeC-CCCCCCCCCccCCCCc
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRA--HKSPI---SALCFDPSGILLVTASVQGHNINIFKI-IPGILGTSSACDAGTS 314 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~a--Ht~~I---saLaFSPdG~lLATaS~DGt~I~Vwdi-~~~~~g~~s~~~~~~s 314 (779)
++.+..+.-|++||.-+++.-+.+++ |...+ -+|+|+|||..|..|-. +.|+|||+ +++..-.
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk--rcirvFdt~RpGr~c~--------- 194 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK--RCIRVFDTSRPGRDCP--------- 194 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc--ceEEEeeccCCCCCCc---------
Confidence 44556777899999999998888874 54444 46999999999998765 46999999 6652111
Q ss_pred eeEEEEee---cCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 315 YVHLYRLQ---RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 315 ~~~l~~l~---rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
..-++. .|. ...|.+++||| |.+.+|.++.-.++-||.-...+....+.+|.+.+.
T Consensus 195 --vy~t~~~~k~gq-~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 195 --VYTTVTKGKFGQ-KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred --chhhhhcccccc-cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 101111 121 12378999999 667999999999999999887777777788866655
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=9.5e-05 Score=80.52 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=63.4
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEE
Q 004015 263 QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI 342 (779)
Q Consensus 263 ~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~L 342 (779)
.-++| .+|+.|++++||+.|+|||.+...|.|||..++ ....+.. +|. .-+.-+-||||+.+|
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg------------~~~pL~~--~gl--gg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG------------QKIPLIP--KGL--GGFSLLKWSPDGDVL 253 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC------------Ccccccc--cCC--CceeeEEEcCCCCEE
Confidence 34566 699999999999999999998888999999876 2233331 332 237789999999999
Q ss_pred EEEeCCCeEEEEecCC
Q 004015 343 MISSSRGTSHLFAINP 358 (779)
Q Consensus 343 AtgS~DGTVhIwdl~~ 358 (779)
.+++-|++.+||..+.
T Consensus 254 faAt~davfrlw~e~q 269 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQ 269 (445)
T ss_pred EEecccceeeeehhcc
Confidence 9999999999997654
No 238
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.72 E-value=0.052 Score=55.52 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=63.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCC----------e-EEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSP----------I-SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~----------I-saLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
+.+...|.|..+|+.+++.+..+..+..+ + ..+.++ +| .+..++.+|..+.+ |+.++
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg--------- 193 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATG--------- 193 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTT---------
T ss_pred EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCC---------
Confidence 33445799999999999999888765432 1 233333 55 56666667765666 98876
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+++.. .. .+.. ....++..|.+++.++++++||+.++
T Consensus 194 -----~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 194 -----EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -----EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred -----CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 3334322 11 1222 25678888888889999999999875
No 239
>KOG4415 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=2e-05 Score=78.57 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=29.6
Q ss_pred eeeeeeeeeecCC-CcccccCCeeEEEEcccCc
Q 004015 582 LYISEAELQMHPP-RIPLWAKPQIYFQSMMIKD 613 (779)
Q Consensus 582 ~ylSnaEv~~h~~-~~piW~~~~~~F~~m~~~~ 613 (779)
.||++|||.||.+ ||+|||+|||.|+.+....
T Consensus 28 eWl~hVEi~Th~gPHRriWmGPQFef~eih~d~ 60 (247)
T KOG4415|consen 28 EWLPHVEIRTHLGPHRRIWMGPQFEFFEIHEDD 60 (247)
T ss_pred ccccceEEEeccCccceeeecCceeEEEecCCC
Confidence 5999999999999 9999999999999987644
No 240
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.68 E-value=4.7e-05 Score=87.65 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+..+.|||...+..+.++++|+..|.|++|+.||+++|+|+.|.- +.||.-.- +- .|+..++
T Consensus 32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~-VI~W~~kl---------------EG--~LkYSH~ 93 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKS-VIIWTSKL---------------EG--ILKYSHN 93 (1081)
T ss_pred CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCcee-EEEecccc---------------cc--eeeeccC
Confidence 357999999999999999999999999999999999999999965 89997432 11 2222332
Q ss_pred cccEEEEEEcCCCCEEEEEeCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..|||+.|.|-...||+++..
T Consensus 94 -D~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 94 -DAIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred -CeeeEeecCchHHHhhhcchh
Confidence 349999999999999988753
No 241
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.0032 Score=65.93 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=53.5
Q ss_pred CCEEEEEECCCCcEEEEEeCC-CCEEEEEE---cCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFR-SPIYSVRC---SSRVVAICQAAQVHCFDAATLEIEYAILTNPIV 124 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~-s~V~sV~~---s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~ 124 (779)
.+.+.-||+.+|..-++++.. .-|..|.. ++++|..+-|+++++||..|.+++.++..+.++
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 478999999999999999864 45777777 478999999999999999999999999887654
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.64 E-value=0.00051 Score=82.91 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=80.5
Q ss_pred cCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 244 ADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.+.|-.+++|++.+.+.+. +.-+|+..|..++|.|+ +|+|++.|-+ .++|+..-. ....|+-+
T Consensus 193 ~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~~~~-------------~l~~y~~h 256 (967)
T KOG0974|consen 193 VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGVNGT-------------QLEVYDEH 256 (967)
T ss_pred EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEecccc-------------eehhhhhh
Confidence 3567789999999987765 66699999999999999 9999999987 799965421 12234444
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
+| ..|+.++..++.-++.|++.||++++|++...+..
T Consensus 257 ~g---~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 257 SG---KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred hh---cceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 44 23999999999999999999999999999775443
No 243
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.64 E-value=0.00019 Score=53.26 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=29.8
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+.++ +++. ..|.+|+|+|++++||+++.|++|+|||
T Consensus 4 ~~~~-~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTF-RGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEE-ESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEE-cCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3344 3433 4599999999999999999999999997
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.63 E-value=0.0002 Score=77.27 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=44.0
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--C-cEEEE-EeCCeEEEEeCCCCcEE
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--S-RVVAI-CQAAQVHCFDAATLEIE 115 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~-rlLaV-s~d~~I~IwD~~T~e~l 115 (779)
....|.+||+...+.-+.|+. ...+.+++++ + ++|.. .++-+|.+|.+.|.++.
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 346899999999999999987 6789999996 3 45544 68889999999987653
No 245
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.60 E-value=0.00062 Score=77.29 Aligned_cols=88 Identities=14% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
+..|.+.|--+.-...+...+||.+-|.++.|++...+++||++|=+ ++|||..-. .||+-.
T Consensus 163 c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~G~---------------~Lf~S~-- 224 (737)
T KOG1524|consen 163 CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQGA---------------NLFTSA-- 224 (737)
T ss_pred ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecccCc---------------ccccCC--
Confidence 34578888888887778889999999999999999999999999976 999996532 233321
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEE
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSH 352 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVh 352 (779)
.+...|++++|.|| +.+|.+|- .|.+
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred hhccceeeeeeccc-cceeeeee-eeee
Confidence 12235999999999 77777764 3444
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.02 Score=62.94 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSS 347 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~ 347 (779)
....+|..+|||++|-.+..--..|-+|.+.+. ..+ |--+.+-.+... -.+..|++++++|+++..
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------------~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------------GGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------------CCE-EEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 467889999999999876654456888888764 011 111111112222 468999999999999887
Q ss_pred CC-eEEEEecCCCCCceeec
Q 004015 348 RG-TSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 348 DG-TVhIwdl~~~gg~~~~~ 366 (779)
|+ +++||.+.+..|..+..
T Consensus 311 ~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 311 KSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCCcEEEEEEcCCCceEEec
Confidence 64 79999999887776653
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.52 E-value=0.0074 Score=69.01 Aligned_cols=77 Identities=19% Similarity=0.152 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 269 SPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
......+|||||+.|+..+. +|. .+||.+.....+ ...+ .+..+ ...+...+|||||++||..+.
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g--------~~~~---~lt~~--~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEG--------QSPR---LLTKK--YRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccc--------cceE---EeccC--CCCccceeECCCCCEEEEEEc
Confidence 34466899999998887664 554 566754321000 0111 12111 123568899999999998766
Q ss_pred C---CeEEEEecCCC
Q 004015 348 R---GTSHLFAINPL 359 (779)
Q Consensus 348 D---GTVhIwdl~~~ 359 (779)
+ ..|++||+...
T Consensus 347 ~~g~~~I~v~dl~~g 361 (428)
T PRK01029 347 IKGVRQICVYDLATG 361 (428)
T ss_pred CCCCcEEEEEECCCC
Confidence 4 35788887643
No 248
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.50 E-value=0.0059 Score=75.23 Aligned_cols=107 Identities=9% Similarity=0.147 Sum_probs=74.4
Q ss_pred CCCeEEEEECCCCcEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 246 NVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~a--Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
.-+.|..||++....+..++. -.+.|++++.+|-+..|++|...|. +-+||++-. ..+...+.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~--------------~~i~sw~~ 1235 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFR--------------VPILSWEH 1235 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce-EEEEEeecC--------------ceeecccC
Confidence 346788999998877666652 3478999999999999999999997 899999865 12222222
Q ss_pred CCCcccEEEEEE---cCCCCEEEEEe--CCCeEEEEecCCCCCceeeccC
Q 004015 324 GLTNAVIQDISF---SDDSNWIMISS--SRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 324 G~t~a~I~sIaF---SpDg~~LAtgS--~DGTVhIwdl~~~gg~~~~~~H 368 (779)
+.. +.|..++. .|...+..+++ ..+.+-+|++..+.+...+...
T Consensus 1236 P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1236 PAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred ccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 221 33444433 44444555444 5778999999998877777543
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.46 E-value=0.00038 Score=87.68 Aligned_cols=91 Identities=19% Similarity=0.375 Sum_probs=67.7
Q ss_pred CCCeEEEEECCC--C-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 246 NVGMVIVRDIVS--K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 246 ~dG~V~VwDl~s--~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.++.+.+||.-- + .++. .+|.+.+++++|-|.-++|.||+.+|. |.|||++.. ...|.
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr------------ql~h~---- 2373 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR------------QLRHT---- 2373 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH------------HHHHH----
Confidence 346778888542 2 2333 899999999999999999999999998 899999853 12221
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
++. +. .-.+|.+|+.+|.++||++...+-..++
T Consensus 2374 -------~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2374 -------FQA--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred -------hhh--hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 122 22 4568999999999999999987544333
No 250
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.45 E-value=0.024 Score=62.98 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=65.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.....+|.+..||..+++.+...... ....+. .++..|..++.+|. +..+|..++ ..+++
T Consensus 244 vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG--------------~~~W~ 304 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGV-VVALDRRSG--------------SELWK 304 (377)
T ss_pred EEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCe-EEEEECCCC--------------cEEEc
Confidence 344556889999999999888776521 112222 34566777778887 899998765 33444
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
... .....+.+.+. .+..|.+++.+|.+++|+..++.....+..+
T Consensus 305 ~~~-~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 305 NDE-LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred ccc-ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 311 00011112222 4678999999999999998775444444433
No 251
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.44 E-value=0.0024 Score=71.81 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=79.6
Q ss_pred cccCCCC-eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVG-MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG-~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+-+..+| .+-|||..+++. ..+...-+.|-+|+.+|||++++.|-.... |-+.|+.++ .++.+-+
T Consensus 375 vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididng------------nv~~idk 440 (668)
T COG4946 375 VIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDNG------------NVRLIDK 440 (668)
T ss_pred EEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecCC------------CeeEecc
Confidence 3445666 889999988754 556667789999999999999999887765 667788776 3343333
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCC----eEEEEecCCCCCceeecc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DG----TVhIwdl~~~gg~~~~~~ 367 (779)
-+.| -|++++|+|+++|||.+--+| .|||||+.. +....+.+
T Consensus 441 S~~~----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT 486 (668)
T COG4946 441 SEYG----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTT 486 (668)
T ss_pred cccc----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecC
Confidence 2223 399999999999999987776 699999964 35555543
No 252
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.42 E-value=0.022 Score=65.15 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=37.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeC----CeEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQA----AQVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d----~~I~IwD~~T~e~ 114 (779)
..|.++|+.+|+...-..++..+....|+ ++.|+...+ ..|+++|+.+++.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 36999999999876655677777777785 556665432 5899999988763
No 253
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.42 E-value=0.00034 Score=77.10 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=71.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
..+.+|....+ +...+.+|-+-++.|+|+||++++.||+.|++ |+|-..... .-+..+.-|++
T Consensus 132 ~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~--------------f~IesfclGH~- 194 (390)
T KOG3914|consen 132 YSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPAT--------------FVIESFCLGHK- 194 (390)
T ss_pred eeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcc--------------cchhhhccccH-
Confidence 45555655553 44556799999999999999999999999997 788664321 12334444543
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.-|..|+.-++ +.|++||.|+|+++||+..+...
T Consensus 195 eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 195 EFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 34888888754 56899999999999999988665
No 254
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.40 E-value=0.00069 Score=82.96 Aligned_cols=96 Identities=13% Similarity=0.217 Sum_probs=73.3
Q ss_pred EECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEE
Q 004015 253 RDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 331 (779)
Q Consensus 253 wDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~ 331 (779)
|.. .|..++++..|...|..++.++. +.+++|||.||+ |+||+...-..+. ++.+...++.+ ....+.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~~~~-------~s~rS~ltys~--~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLEGEG-------GSARSELTYSP--EGSRVE 1102 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhhcCc-------ceeeeeEEEec--cCCceE
Confidence 443 35689999999999999998775 589999999998 9999987641111 12233233322 234588
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 332 DISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 332 sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+.+.+.+..+|+++.||.|+++++..+
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 9999999999999999999999999886
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.013 Score=67.69 Aligned_cols=99 Identities=19% Similarity=0.325 Sum_probs=76.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+...+++|..|+......++.+++-...+..++.+|||++|++||. .|++||+.+. +.+.+
T Consensus 117 iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~k--------------evv~~ 179 (541)
T KOG4547|consen 117 IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIETK--------------EVVIT 179 (541)
T ss_pred eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccCc--------------eEEEE
Confidence 344567889999999999999999999999999999999999999985 3999999875 33333
Q ss_pred eecCCCcccEEEEEEcCC-----CCEEEEE-eCCCeEEEEecCC
Q 004015 321 LQRGLTNAVIQDISFSDD-----SNWIMIS-SSRGTSHLFAINP 358 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpD-----g~~LAtg-S~DGTVhIwdl~~ 358 (779)
| .|+ ...|.+++|--+ |.||.++ -.+.-+.+|-+..
T Consensus 180 f-tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 F-TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred e-cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 3 554 456999999887 6676554 3344566777654
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0042 Score=71.18 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=42.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEeCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-----GHNINIFKII 299 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-----Gt~I~Vwdi~ 299 (779)
-.|.|-|||+.+.+++..+.+-.. +-..|+|||++++||..- .+.|+||+..
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 458899999999999999987644 457899999999999764 1238999864
No 257
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.31 E-value=0.00021 Score=79.88 Aligned_cols=106 Identities=10% Similarity=0.269 Sum_probs=87.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++.++..|.++--|+.+++.++.|..-.+.+..|+-+|-...+-+|-..|+ |.+|.-..- ..|.+
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~sk--------------ePLvK 288 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPNSK--------------EPLVK 288 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCCCc--------------chHHH
Confidence 356677899999999999999999988899999999999999999999998 899974431 12222
Q ss_pred e--ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 321 L--QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 321 l--~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+ ++| .|.+||+.++|+|+||++.|..++||||..+....+.
T Consensus 289 iLcH~g----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 289 ILCHRG----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred HHhcCC----CcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 2 233 4899999999999999999999999999988644443
No 258
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.31 E-value=0.001 Score=72.00 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=67.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
..+++|.+|++...+--..+..-..++++++|||||+ +|.|...|-+ |.||.+.+. .+.++. .
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lr-iTVWSL~t~------------~~~~~~---~ 131 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR-ITVWSLNTQ------------KGYLLP---H 131 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeE-EEEEEeccc------------eeEEec---c
Confidence 4578999999999888888888888999999999996 5666666765 899999874 122221 1
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..+.+..++|.|||+|.|+.+.+
T Consensus 132 --pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 132 --PKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred --cccCceeEEECCCCceeeeeecc
Confidence 22347899999999999999876
No 259
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.0018 Score=71.31 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=83.8
Q ss_pred ccccCCCCeEEEEECCC------CcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 241 FPDADNVGMVIVRDIVS------KNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s------~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
++++..|-.++||.+.. .+++..+. .|.+.|.||+|+-..+.|.+|..+|+ |..-|+.+.
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~------------ 137 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK------------ 137 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc------------
Confidence 45677788999999863 35665554 55689999999999999999999998 678899864
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
..+|.+........|+.+.-+|-...||+.+.+|.|.+||+....
T Consensus 138 --qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 138 --QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred --eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 456665433333359999999999999999999999999997654
No 260
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.00066 Score=77.27 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=82.7
Q ss_pred cccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSP--dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.+++++.|-.+.|||.-..+++..+. +|+..|-+++|=| +.++++||+.|.. |+|||+.....+. +....
T Consensus 64 lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~-i~lfdl~~~~~~~------~d~~~ 136 (758)
T KOG1310|consen 64 LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL-IKLFDLDSSKEGG------MDHGM 136 (758)
T ss_pred EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce-EEEEecccccccc------cccCc
Confidence 35778888999999999988888887 9999999999999 4679999999965 9999997531110 00000
Q ss_pred EEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~ 358 (779)
.......+.+...|..|+-.|++ .-|-+++.|||++-+|+..
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 00011122223347789999999 7788999999999999965
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.29 E-value=0.0063 Score=66.41 Aligned_cols=100 Identities=19% Similarity=0.337 Sum_probs=76.6
Q ss_pred cCCCCeEEEE--ECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVR--DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~Vw--Dl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++..|.|.+- +...-.++.++.+|+++|.+++|+|.-.+|.+++.|- .+.+||+--. . ...|.+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~-~vi~wdigg~-~------------g~~~el 236 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH-SVIMWDIGGR-K------------GTAYEL 236 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC-ceEEEeccCC-c------------ceeeee
Confidence 4455656553 3345578899999999999999999999999999984 5899998643 1 123444
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+ + ..+|+.++.-+--+.+.+.+.||.|-+|+.+-.
T Consensus 237 ~g-h-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 237 QG-H-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred cc-c-hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 33 2 345888888888899999999999999999754
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.25 E-value=0.04 Score=69.87 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=52.5
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC-----------CcccEEEEEEcCCCC
Q 004015 272 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----------TNAVIQDISFSDDSN 340 (779)
Q Consensus 272 saLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~-----------t~a~I~sIaFSpDg~ 340 (779)
..|+|+++|.++++-+.++ .|++||..++. ...+. ..|. .-.....|++++||+
T Consensus 807 ~Gvavd~dG~LYVADs~N~-rIrviD~~tg~------------v~tia--G~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNH-KIKKLDPATKR------------VTTLA--GTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred ceeeEeCCCcEEEEECCCC-EEEEEECCCCe------------EEEEe--ccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 4799999999877766665 49999987641 01000 0110 001357899999999
Q ss_pred EEEEEeCCCeEEEEecCCCC
Q 004015 341 WIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 341 ~LAtgS~DGTVhIwdl~~~g 360 (779)
.+++-+.+++|++||+.+..
T Consensus 872 lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 872 LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCEEEEEECCCCc
Confidence 99999999999999997753
No 263
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.25 E-value=0.00078 Score=46.30 Aligned_cols=38 Identities=26% Similarity=0.690 Sum_probs=34.3
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.++..+.+|...|.+++|++++.++++++.||+ +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 467778899999999999999999999999997 89996
No 264
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.23 E-value=0.14 Score=56.15 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=61.8
Q ss_pred eEEEEECCCCcEEEE--ec--cCCCCeEEEEEcCCCCEEEEEeCCCC------EEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 249 MVIVRDIVSKNVIAQ--FR--AHKSPISALCFDPSGILLVTASVQGH------NINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~--f~--aHt~~IsaLaFSPdG~lLATaS~DGt------~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+..-|..+++++.+ +. -|..+|.-|+++++|+.+.-.=.+|- .+-+|+-.. . ..+
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-------------~-~~~ 204 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-------------A-LRL 204 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-------------c-cee
Confidence 455677888888777 52 37889999999999988776655543 111111110 0 001
Q ss_pred EEee----cCCCcccEEEEEEcCCCCEEEEEeCCC-eEEEEecCCC
Q 004015 319 YRLQ----RGLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAINPL 359 (779)
Q Consensus 319 ~~l~----rG~t~a~I~sIaFSpDg~~LAtgS~DG-TVhIwdl~~~ 359 (779)
.... +.. ..-|-+|||++|+.++|++|-+| .+.+||..+.
T Consensus 205 ~~~p~~~~~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 205 LPAPEEQWRRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred ccCChHHHHhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 1110 111 12378999999999998888775 7999999875
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.05 Score=59.88 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCC
Q 004015 271 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRG 349 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DG 349 (779)
+-+..|+|+|++|++.+-.-..|.+|++..+.... ...+.+..|.- -.-|+|+|++++.-+.+ .++
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~----------~~~~~v~~G~G---PRHi~FHpn~k~aY~v~EL~s 213 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP----------ADPAEVKPGAG---PRHIVFHPNGKYAYLVNELNS 213 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCcccc----------ccccccCCCCC---cceEEEcCCCcEEEEEeccCC
Confidence 55688999999999988754568999998652111 11223344432 45799999999976554 599
Q ss_pred eEEEEecCCCCC-ceeeccCCCCCCccCCCcCCcceecCCCCCCCCCCCCccccCC
Q 004015 350 TSHLFAINPLGG-SVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASG 404 (779)
Q Consensus 350 TVhIwdl~~~gg-~~~~~~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~~l~~~~ 404 (779)
||-+|.+++..+ .-.++.+..-+..|.|-.-...++.+ .|+.-|+++|
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis-------~dGrFLYasN 262 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS-------PDGRFLYASN 262 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC-------CCCCEEEEec
Confidence 999999999744 44668887666655543333333333 3444455554
No 266
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.09 E-value=0.0071 Score=72.62 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=121.4
Q ss_pred CEEEEEECCCCcEEEEEeCCC-CEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS-PIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s-~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
..+--+|+++.+..+.....+ .|.=++.|++++-+ ...++|.+-|..+++.++++..|..- +..+.
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s------------iSDfD 224 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS------------ISDFD 224 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc------------eeeee
Confidence 557789999999888888754 68888888777766 56789999999999999999988421 11122
Q ss_pred ecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCc
Q 004015 142 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 221 (779)
Q Consensus 142 lgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~ 221 (779)
+. |.++.....+.
T Consensus 225 v~------------------------------------GNlLitCG~S~------------------------------- 237 (1118)
T KOG1275|consen 225 VQ------------------------------------GNLLITCGYSM------------------------------- 237 (1118)
T ss_pred cc------------------------------------CCeEEEeeccc-------------------------------
Confidence 11 11111100000
Q ss_pred CccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCC
Q 004015 222 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 222 ~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~ 300 (779)
....-.-|--|+|||++..+.+.-+.-|.+| .-+.|.|. -+.||.+|..|. +.+-|..+
T Consensus 238 ------------------R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~ 297 (1118)
T KOG1275|consen 238 ------------------RRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTAT 297 (1118)
T ss_pred ------------------ccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccccc
Confidence 0000012456899999998887777767666 56899997 457888888887 77777433
Q ss_pred CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 301 ~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
. +.+.....++.. ....|..++||+.++.+|.|..+|.|++|.
T Consensus 298 l-------sNP~~~~~~v~p-----~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 L-------SNPPAGVKMVNP-----NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred c-------CCCccceeEEcc-----CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 001111222111 112388999999999999999999999998
No 267
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.03 E-value=0.0056 Score=70.85 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=68.6
Q ss_pred EEEECCCCcE--EEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 251 IVRDIVSKNV--IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 251 ~VwDl~s~~~--v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
.+|++..++. ++... .+.+.|.|.+++|+.+.|+.|..||. |.+||...+ ..+.. +. .
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~-------------~t~~~---ka--~ 299 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRG-------------VTLLA---KA--E 299 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCCC-------------eeeee---ee--c
Confidence 5677765532 22222 67889999999999999999999998 899998764 11111 11 1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
-....++|+|||.+|++|+..|.+.+||+.-.
T Consensus 300 ~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 300 FIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 12678999999999999999999999999764
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.02 E-value=0.088 Score=58.48 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=60.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCC-CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKS-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~-~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+.....+|.|..+|..+++.+..+..... ....... .|.+|.+++.+|. +.+||..++ +.+
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG--------------~~~ 343 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDG--------------SFV 343 (377)
T ss_pred EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCC--------------CEE
Confidence 344456789999999999988876642211 2222222 4668888999997 899998765 344
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+++.-+.. ....+.++. ++ .|.+++.||+++.|.
T Consensus 344 ~~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 344 ARLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred EEEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 55542221 011222333 33 478999999998874
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.93 E-value=0.012 Score=65.69 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=74.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
|.|.|.|..+.+.+.++..=..|-- + +||||+.|..|.. +...|.|||+.+. ..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--------------~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--------------LPI 90 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--------------cEE
Confidence 8999999999999999884444433 4 9999999988877 5556999999875 333
Q ss_pred EEeecCCC-----cccEEEEEEcCCCCEEEEEe-C-CCeEEEEecCCCCCceee
Q 004015 319 YRLQRGLT-----NAVIQDISFSDDSNWIMISS-S-RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 319 ~~l~rG~t-----~a~I~sIaFSpDg~~LAtgS-~-DGTVhIwdl~~~gg~~~~ 365 (779)
.++.-+.. ...-..+++||||++|.+.. . +..|-|.|+....-...+
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 34432211 11234799999999999887 4 689999999876443333
No 270
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.001 Score=73.03 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=72.2
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
+.+.+.+|++-|++|.||.+|++||+|+.|-+ ++||.+........ -+.+ .+....+...|.|++|.-..
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~-~~~W~~de~~~~k~--------~KPI-~~~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMH-GRVWNVDELMVRKT--------PKPI-GVMEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcce-eeeechHHHHhhcC--------CCCc-eeccCccccceEEEEEccCC
Confidence 34556799999999999999999999999987 89998764200000 0111 12112222459999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 340 NWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
++|.+|..+++|.+-|+.+......+ .|.+
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~ 147 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVA-NENN 147 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeee-cccC
Confidence 99999999999999999886544443 4444
No 271
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.80 E-value=0.0074 Score=65.37 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=78.4
Q ss_pred cCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 244 ADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+...|.||..... +...+++.|...|+.|+|+|.+..|+|++.|.+ -.||....+..+. ....|.+
T Consensus 28 ~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~~~Wk--------ptlvLlR 98 (361)
T KOG1523|consen 28 SPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSGGTWK--------PTLVLLR 98 (361)
T ss_pred ccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCCCeec--------cceeEEE
Confidence 345567889887764 478899999999999999999999999999976 7999875441111 0122334
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+.|. .++|-|||.+..||+||.-..|-||=++.
T Consensus 99 iNrA-----At~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 99 INRA-----ATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred eccc-----eeeEeecCcCceEEeccCccEEEEEEEec
Confidence 4332 68999999999999999999999998764
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.74 E-value=0.64 Score=51.48 Aligned_cols=80 Identities=16% Similarity=0.333 Sum_probs=54.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee--EEEEeecCCCcccEEEEEEcCCCCEEEEE-e
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV--HLYRLQRGLTNAVIQDISFSDDSNWIMIS-S 346 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~--~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S 346 (779)
..-++.|+|||++|++++.....|.+|++... . ..+. ....+..|. --..++|+||++++.+. -
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~-~---------~~l~~~~~~~~~~G~---GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD-T---------GKLTPVDSIKVPPGS---GPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT-S----------TEEEEEEEECSTTS---SEEEEEE-TTSSEEEEEET
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCC-C---------ceEEEeeccccccCC---CCcEEEEcCCcCEEEEecC
Confidence 46689999999999998876667999998764 0 0121 222344443 25789999999988655 4
Q ss_pred CCCeEEEEecCCCCCc
Q 004015 347 SRGTSHLFAINPLGGS 362 (779)
Q Consensus 347 ~DGTVhIwdl~~~gg~ 362 (779)
.+++|.+|++....+.
T Consensus 212 ~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGS 227 (345)
T ss_dssp TTTEEEEEEEETTTTE
T ss_pred CCCcEEEEeecccCCc
Confidence 5789999999854443
No 273
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0042 Score=68.92 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=74.8
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 250 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 250 V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
|++.+-.+.+.+.-+..|...|..|+|||... +|..+|.+. .|+|+|+.+. .+...|..+ .
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~n-kiki~dlet~------------~~vssy~a~-----~ 236 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGN-KIKIMDLETS------------CVVSSYIAY-----N 236 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCc-eEEEEecccc------------eeeeheecc-----C
Confidence 77777777777777789999999999999877 788888875 5999999975 234445543 3
Q ss_pred cEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCCCce
Q 004015 329 VIQDISFSDDSNW-IMISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 329 ~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~~gg~~ 363 (779)
.|+++||.-|... |..|-.+|.|.|||+....++.
T Consensus 237 ~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 237 QIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred CceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 4999999887765 5556678999999998776554
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.61 E-value=0.28 Score=56.23 Aligned_cols=81 Identities=23% Similarity=0.175 Sum_probs=47.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCC-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.++|+.+++. ..+..+........|+|||+.|+-.+. .|. .|.+.|+..+ ..+.+ .. .|.
T Consensus 257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g------------~~~rl-t~-~g~ 321 (419)
T PRK04043 257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG------------SVEQV-VF-HGK 321 (419)
T ss_pred cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC------------CeEeC-cc-CCC
Confidence 4678888877753 334434333344689999997776664 343 2444455443 12221 11 122
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
...+|||||++||..+..
T Consensus 322 -----~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 322 -----NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred -----cCceECCCCCEEEEEEcC
Confidence 124899999999988765
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.59 E-value=0.012 Score=63.27 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=73.2
Q ss_pred cCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 244 ADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+...|.+.+-+.....+ ++..++|.-++...+|+.. -.++.||++||. +.-||++.. ...++.
T Consensus 139 s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p-------------~~~i~~ 204 (339)
T KOG0280|consen 139 SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP-------------KTFIWH 204 (339)
T ss_pred EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC-------------cceeee
Confidence 34456666555444433 4588999999999999874 568999999997 899999831 123333
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCC
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
-.+-++ +-|.+|.=|| +..+||+|+.|-+|++||...-+.
T Consensus 205 n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 205 NSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred cceeee-cceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 222222 3377887776 688999999999999999975543
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.42 E-value=0.0097 Score=65.01 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=71.5
Q ss_pred cccccCCCCeEEEEECCCCcEE----------------EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVI----------------AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL 303 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v----------------~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~ 303 (779)
.|+-.+..|.|++.|++...+. .-|..-..+|+.++|+++|+|++|-+-- .++|||+... .
T Consensus 228 ~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl--tvk~wD~nme-~ 304 (433)
T KOG1354|consen 228 VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL--TVKLWDLNME-A 304 (433)
T ss_pred EEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc--eeEEEecccc-C
Confidence 3455667899999999853211 1122223589999999999999996654 4999999543 1
Q ss_pred CCCCccCCCCceeEEEEeecCC---------Ccc--cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 304 GTSSACDAGTSYVHLYRLQRGL---------TNA--VIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 304 g~~s~~~~~~s~~~l~~l~rG~---------t~a--~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+ ...|.++.-. ..+ .=..++||-++.+++|||-..-++||++..+
T Consensus 305 ~p----------v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 305 KP----------VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred Cc----------ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 11 1122222100 001 1246999999999999999999999997654
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.36 E-value=0.13 Score=55.09 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=44.6
Q ss_pred cccccCCCCeEEEEECCCCcEEE-----EeccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIA-----QFRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~-----~f~aHt~~IsaLaFSPdG~--lLATaS~DGt~I~Vwdi~~~ 301 (779)
.|+.+.+||.+-|||++...... +-..|.++|..+.|++-|- ||.-.-.-+. ++|-|++++
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~ 284 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNY 284 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccC
Confidence 56778899999999999764322 2236889999999999775 3444333444 789998876
No 278
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.022 Score=65.53 Aligned_cols=90 Identities=13% Similarity=0.325 Sum_probs=67.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D---Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
-..+|.|||++.. ++..|. .++=+++-|||.|.+|+-|+.+ |. |-|||+... ..+-++.
T Consensus 292 MPAkvtifnlr~~-~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~--------------K~i~~~~ 353 (566)
T KOG2315|consen 292 MPAKVTIFNLRGK-PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNR--------------KLIAKFK 353 (566)
T ss_pred ccceEEEEcCCCC-EeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccch--------------hhccccc
Confidence 4568899998754 555553 5677889999999999999874 55 899998753 3333332
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeC------CCeEEEEecC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSS------RGTSHLFAIN 357 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~------DGTVhIwdl~ 357 (779)
- +.-+=+.|+|||+||.|++. |..++||++.
T Consensus 354 a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 354 A----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred c----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 1 12345899999999999886 6889999984
No 279
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.27 E-value=0.27 Score=53.72 Aligned_cols=95 Identities=13% Similarity=0.193 Sum_probs=59.4
Q ss_pred CeEEEEECCCCc-EEE--EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKN-VIA--QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~-~v~--~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
+.|.+|++...+ .+. .+..+ ..|++|..- +.+++.|+.... +.++..... ...+..+.|-
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~--~~~I~vgD~~~s-v~~~~~~~~-------------~~~l~~va~d 169 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVF--KNYILVGDAMKS-VSLLRYDEE-------------NNKLILVARD 169 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEE--TTEEEEEESSSS-EEEEEEETT-------------TE-EEEEEEE
T ss_pred CEEEEEEccCcccchhhheecce-EEEEEEecc--ccEEEEEEcccC-EEEEEEEcc-------------CCEEEEEEec
Confidence 578888887766 332 22222 255555544 558888888654 677644331 1223344444
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.....+.+++|-+|++.++++..+|.+++|.+.+.
T Consensus 170 ~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 170 YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 44445899999877789999999999999999653
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.25 E-value=1.1 Score=48.54 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCCeEEEEECC-----CCcEEEEe--ccC-CCCeEEEEEcCCCCEEEEEeCC-CC---------EEEEEeCCCCCCC--
Q 004015 245 DNVGMVIVRDIV-----SKNVIAQF--RAH-KSPISALCFDPSGILLVTASVQ-GH---------NINIFKIIPGILG-- 304 (779)
Q Consensus 245 ~~dG~V~VwDl~-----s~~~v~~f--~aH-t~~IsaLaFSPdG~lLATaS~D-Gt---------~I~Vwdi~~~~~g-- 304 (779)
...|.++=|-+. ..+....| ..| ...|+++.|+|.-++|+.|+.. .. -+.-|++..+.+-
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence 455655555432 22333333 344 6789999999998888776542 11 1567777654220
Q ss_pred C-CCccCCC------CceeEEEEe----ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 305 T-SSACDAG------TSYVHLYRL----QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 305 ~-~s~~~~~------~s~~~l~~l----~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
. .+..+.. .....+..+ +.+.....|..|+.||||+.||+...+|.+-||++-.......+
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 0 0000000 011111111 12222334999999999999999999999999999665444343
No 281
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.14 E-value=1.7 Score=47.53 Aligned_cols=50 Identities=6% Similarity=0.246 Sum_probs=40.8
Q ss_pred CEEEEEECCCC-------cEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCCc
Q 004015 64 TVVHFYSLRSQ-------SYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLE 113 (779)
Q Consensus 64 ~tVrIWDL~Tg-------e~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~e 113 (779)
+.|.++++... +.++...++++|++|+.-+..|+++..++|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 78999999985 455666779999999986555888889999999998777
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.11 E-value=0.61 Score=58.61 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=66.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV--QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~--DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
-.++||+-. +....+-+.-.+--.+|+|-|+|.++|+.-. +.+.|..|.-. | .-+--+.++...
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-G------------LrhgeF~l~~~~ 302 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-G------------LRHGEFTLRFDP 302 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-C------------cEeeeEecCCCC
Confidence 589999976 4444443333333446999999999999876 23446666532 2 223345554322
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
....|..++|++||..||+...|. |.+|-...|.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 334599999999999999988665 9999998874
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.02 Score=65.53 Aligned_cols=125 Identities=20% Similarity=0.261 Sum_probs=83.9
Q ss_pred cccccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC-----CCC-
Q 004015 240 HFPDADNVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GTS- 306 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s-------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~-----g~~- 306 (779)
.|++++.|.+|++|.++. ..+..++++|+.+|..+.|-.|-+++|++ ||- |++||-.-+-. +..
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g-iHlWDPFigr~Laq~~dapk 825 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG-IHLWDPFIGRLLAQMEDAPK 825 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc-ceeecccccchhHhhhcCcc
Confidence 467788999999999874 34778889999999999999999999875 454 89999654311 000
Q ss_pred -Cc------------------cCCCCcee----------EEEEeec-CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 307 -SA------------------CDAGTSYV----------HLYRLQR-GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 307 -s~------------------~~~~~s~~----------~l~~l~r-G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
++ +....+++ ..++... ...++-+.+++..+.|+|+|++-+.|++.+.|.
T Consensus 826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence 00 00001111 1111110 111244789999999999999999999999998
Q ss_pred CCCCCceeecc
Q 004015 357 NPLGGSVNFQP 367 (779)
Q Consensus 357 ~~~gg~~~~~~ 367 (779)
..+.-.-.++.
T Consensus 906 R~G~vINswrp 916 (1034)
T KOG4190|consen 906 RNGKVINSWRP 916 (1034)
T ss_pred CCCceeccCCc
Confidence 77644444443
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.02 E-value=2.3 Score=54.46 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=52.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec--CC----CcccEEEEEEcCCCCEEE
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR--GL----TNAVIQDISFSDDSNWIM 343 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r--G~----t~a~I~sIaFSpDg~~LA 343 (779)
....|+|+|+|+.|..++.+.+.|++||+.++.. .....+.......++.+-. |. .-..-..|+|++||+.++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 3456999999997766666656699999875410 0000000000000111100 00 001135899999999999
Q ss_pred EEeCCCeEEEEecCCC
Q 004015 344 ISSSRGTSHLFAINPL 359 (779)
Q Consensus 344 tgS~DGTVhIwdl~~~ 359 (779)
+-+.+++|++||....
T Consensus 820 ADs~N~rIrviD~~tg 835 (1057)
T PLN02919 820 ADSYNHKIKKLDPATK 835 (1057)
T ss_pred EECCCCEEEEEECCCC
Confidence 9999999999998653
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.86 E-value=0.12 Score=55.35 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=68.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..+++.+-+..+.+...+++.- .+..+++|+|++++++.++-.. |-.|.|... +..++. ..-..
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~--~~ns~~~snd~~~~~~Vgds~~-Vf~y~id~~------------sey~~~-~~~a~ 201 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNL--TQNSLHYSNDPSWGSSVGDSRR-VFRYAIDDE------------SEYIEN-IYEAP 201 (344)
T ss_pred cceeEEEEecCcccceeecccc--ceeeeEEcCCCceEEEecCCCc-ceEEEeCCc------------cceeee-eEecc
Confidence 3455555555555544444432 2888999999999999877654 777887653 112222 11122
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
+...=.+.+||.....+|+++.||++-|||+..-+-+..
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 222246899999999999999999999999987654433
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.82 E-value=2.9 Score=43.57 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=60.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
|.|..++.. ++....+ ..-..-+.|+|+|||+.|..+......|..|++... +. . ....+.+..+..+.
T Consensus 115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~--~~-~----~~~~~~~~~~~~~~-- 183 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD--GG-E----LSNRRVFIDFPGGP-- 183 (246)
T ss_dssp EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT--TC-C----EEEEEEEEE-SSSS--
T ss_pred cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc--cc-c----eeeeeeEEEcCCCC--
Confidence 667777777 4432222 223456889999999988766665555777777532 00 0 00112233333221
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
...-.+++..+|++.++....+.|.+|+-.
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 235679999999998888888999998865
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.68 E-value=0.92 Score=48.98 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=29.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 267 HKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 267 Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
-..-|..|+.||||++||+....|. |-+|++..
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPs 260 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPS 260 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCe-EEEEecCc
Confidence 3467999999999999999999998 89999975
No 288
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.054 Score=63.33 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=62.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee-cCCCcccE-EEEEEcCCCCEEEEEeC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVI-QDISFSDDSNWIMISSS 347 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~-rG~t~a~I-~sIaFSpDg~~LAtgS~ 347 (779)
.|--+-|+|.=.++|++-.+|+ +-+.++. . +.++++. +|.. + .++||.|||+.||+|-.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~--------------qRlwtip~p~~~---v~~sL~W~~DGkllaVg~k 82 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLN-W--------------QRLWTIPIPGEN---VTASLCWRPDGKLLAVGFK 82 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEec-c--------------ceeEeccCCCCc---cceeeeecCCCCEEEEEec
Confidence 4566889999999999999998 6777765 2 4667775 4432 3 49999999999999999
Q ss_pred CCeEEEEecCCCCCceee
Q 004015 348 RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 348 DGTVhIwdl~~~gg~~~~ 365 (779)
||||+|-|+.++++...+
T Consensus 83 dG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 83 DGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred CCeEEEEEccCCCceecc
Confidence 999999999998776663
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.098 Score=60.39 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCC---eEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSP---ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~---IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
...+.|||+.+|...+.|..-.++ ..-.+||.|++++|--..+ .|.||+.... .++.. +
T Consensus 281 ~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~--sisIyEtpsf---------------~lld~-K 342 (698)
T KOG2314|consen 281 GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN--SISIYETPSF---------------MLLDK-K 342 (698)
T ss_pred CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc--eEEEEecCce---------------eeecc-c
Confidence 347999999999999999874332 2337899999999987665 4899987542 23332 2
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
...-..|.+..|||.+..||.-+-
T Consensus 343 slki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 343 SLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccCCccccCcccCCCcceEEEEcc
Confidence 222234899999999999986543
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.46 E-value=2.4 Score=47.74 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=44.8
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEE--EEEcCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~s--V~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
.+.|.-+|.+||+.+.+.+....+.+ +...+.+++.+.++.|+.+|+.|++.+.....
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 46788999999999999888665543 12245555556788999999999999988864
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.43 E-value=0.32 Score=58.20 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=79.3
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------C---CEEEEEeCCCCCCCCCCccC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ------G---HNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D------G---t~I~Vwdi~~~~~g~~s~~~ 310 (779)
.++-+.+.|+|.|+|+.++.+-+.|..|++.|.+|.|--...++ +.+.. | +.+.|-|+++|.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslv-Sfsys~~n~~sg~vrN~l~vtdLrtGl-------- 509 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV-SFSYSHVNSASGGVRNDLVVTDLRTGL-------- 509 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEE-EeeeccccccccceeeeEEEEEccccc--------
Confidence 34567789999999999999999999999999999997766544 33321 1 124566777761
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..-++-.++...+.|.-|--|.-++|||+.-.|.-+.|||+...
T Consensus 510 -----sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 510 -----SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred -----ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 11122224444566999999999999999999999999999654
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.42 E-value=0.039 Score=60.51 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=72.9
Q ss_pred cccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 242 PDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~----~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
..+.-.|.|.++|++.+ .--++---|.++|++|..=. ++++|+..+-+|+ |++||.+....+. ..
T Consensus 268 ~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~---------~V 337 (425)
T KOG2695|consen 268 FNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKK---------SV 337 (425)
T ss_pred EecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhccc---------ce
Confidence 34677899999999875 22333335889999988766 8899999999998 9999987531111 02
Q ss_pred EEEEeecCCCcc-cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 317 HLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 317 ~l~~l~rG~t~a-~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..| .|+.+. .-.-+-..+....|+++++|--.+||.+..+
T Consensus 338 ~qY---eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 338 MQY---EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred eee---ecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 223 233221 1123445677788899999999999999864
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.41 E-value=0.057 Score=59.25 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=78.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+-.|-+-|+.++- ...|. -++.|.++.|.-.+.+|..|...|. |-+.|++....|+ .+....+..+
T Consensus 232 ~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~---------~~~a~rlyh~- 298 (425)
T KOG2695|consen 232 LSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGN---------GWCAQRLYHD- 298 (425)
T ss_pred ccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCC---------CcceEEEEcC-
Confidence 44567777887763 23444 5678999999999999999999997 8899998752222 2233333222
Q ss_pred CcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCC---ceeeccCCCCCC
Q 004015 326 TNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG---SVNFQPTDANFT 373 (779)
Q Consensus 326 t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg---~~~~~~H~~~~~ 373 (779)
..|+++..=. +.++|++++++|+|++||+.-..+ .....+|.+...
T Consensus 299 --Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a 348 (425)
T KOG2695|consen 299 --SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA 348 (425)
T ss_pred --cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc
Confidence 2244443322 478999999999999999987766 556678877544
No 294
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.35 E-value=3.3 Score=45.68 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=58.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
|.|..+|. .+..++.+..|-.--+.|+|||||+.|-.++.....|.-|++... .+... +. ..........|.
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~-~g~~~--~~--~~~~~~~~~~G~-- 214 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA-TGPIG--GR--RGFVDFDEEPGL-- 214 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc-cCccC--Cc--ceEEEccCCCCC--
Confidence 54444444 456666666665556679999999999888887665777766531 11111 00 001111112232
Q ss_pred ccEEEEEEcCCCCEEEEEeCCC-eEEEEecC
Q 004015 328 AVIQDISFSDDSNWIMISSSRG-TSHLFAIN 357 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DG-TVhIwdl~ 357 (779)
--.++...||.+.+++-..| .|++|+-.
T Consensus 215 --PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 215 --PDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred --CCceEEeCCCCEEEecccCCceEEEECCC
Confidence 23577778888776555554 78888776
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.23 E-value=1.8 Score=44.15 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=44.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCcEEEEEeCCeEEEEeCCCCcEEEEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAICQAAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~s--V~~s~rlLaVs~d~~I~IwD~~T~e~l~tl 118 (779)
+.|..||..+|+.+.++.++.++.. +...+++++++.++.|++||+.|++.++++
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeee
Confidence 7799999999999999998655432 233466666677889999999999999985
No 296
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.18 E-value=0.036 Score=37.64 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=25.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
..|.+++|+++++++++++.|+++++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3599999999999999999999999996
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.06 E-value=0.64 Score=53.49 Aligned_cols=203 Identities=18% Similarity=0.205 Sum_probs=117.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCC--eE-EEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSP--IS-ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~--Is-aLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+.|||+.++..+..|..-..+ .. -++|+-|.+|+|=-. |+.++|+++... ...+....++
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--~~sl~i~e~t~n-----------~~~~p~~~lr-- 172 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV--GSSLYIHEITDN-----------IEEHPFKNLR-- 172 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc--cCeEEEEecCCc-----------cccCchhhcc--
Confidence 37899999999999999977666 55 799999999887653 446899997321 0112222332
Q ss_pred CCcccEEEEEEcCCCCE--EE-----EEeCCCeEEEEecCCCCCceeeccCCC-CCCccCCCcCCcceecCCCCCCCCCC
Q 004015 325 LTNAVIQDISFSDDSNW--IM-----ISSSRGTSHLFAINPLGGSVNFQPTDA-NFTTKHGAMAKSGVRWPPNLGLQMPN 396 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~--LA-----tgS~DGTVhIwdl~~~gg~~~~~~H~~-~~~~~~~~~~~~~~r~~~~s~l~~~~ 396 (779)
...|++.+|||-+.. || ....+++++||.|.... .+.+|+- ... +.-+.|........+.
T Consensus 173 --~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s---~l~tk~lfk~~-------~~qLkW~~~g~~ll~l 240 (561)
T COG5354 173 --PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS---VLVTKNLFKVS-------GVQLKWQVLGKYLLVL 240 (561)
T ss_pred --ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC---eeeeeeeEeec-------ccEEEEecCCceEEEE
Confidence 123899999997443 44 34567889999996332 2222210 000 0112222222111111
Q ss_pred CCccccCCCCe----eeeeeEEeecCCC----CCCCcccCccccccCCc-CCCCCceeee--eeccCCCCcccccCCccc
Q 004015 397 QQSLCASGPPV----TLSVVSRIRNGNN----GWRGTVSGAAAAATGRV-SSLSGAIASS--FHNCKGNSETYAAGSSLK 465 (779)
Q Consensus 397 ~~~l~~~~pp~----~ls~v~ri~~~~~----~~~~~v~~~a~~~~g~~-~~~~g~~~~~--~~~~~~~~~~~~~~~~~~ 465 (779)
.++-..+|-.. .|- +-||...+- +..++|...+-.+.++. ...+|+-+++ +|+-.++--++ ...
T Consensus 241 ~~t~~ksnKsyfgesnLy-l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~----~Pe 315 (561)
T COG5354 241 VMTHTKSNKSYFGESNLY-LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFY----FPE 315 (561)
T ss_pred EEEeeecccceeccceEE-EEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEe----cCC
Confidence 11111222111 122 336665432 45788999988888777 7778877764 44444443222 233
Q ss_pred ccccEEEEccCccEEEE
Q 004015 466 IKNHLLVFSPSGCMIQY 482 (779)
Q Consensus 466 ~~~~l~V~~p~G~liqy 482 (779)
...+-++|+|+++.|-.
T Consensus 316 ~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 316 QKRNTIFFSPHERYILF 332 (561)
T ss_pred cccccccccCcccEEEE
Confidence 56778899999987764
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.03 E-value=0.049 Score=57.89 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=69.8
Q ss_pred cccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCC--CCC-c-cCCC--C
Q 004015 242 PDADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILG--TSS-A-CDAG--T 313 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~-~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g--~~s-~-~~~~--~ 313 (779)
..+..+|.|.|||.+... ++..+++|+.+|.-+-|.| ++..|.|+|.||. +--||..+...+ +.+ . ..|. .
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGD 274 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCC
Confidence 456789999999999875 4566789999999999999 5889999999997 677887632111 000 0 0000 0
Q ss_pred ceeEEEEeecCCCcccEEEE-EEcCCCCEEEEEeCCCeEEEEe
Q 004015 314 SYVHLYRLQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sI-aFSpDg~~LAtgS~DGTVhIwd 355 (779)
.++.+.++. +.-+....+| .|.--|..|++|++-+-|++++
T Consensus 275 ~v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111111221 1111222222 2444566788888888888765
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.095 Score=62.72 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=70.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++-+...|.|.+++....- .+...|... +-+|.++||+|.||+ |.|..+.+. .-.+.+
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~------------~~~~~~ 109 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD------------DEITQY 109 (846)
T ss_pred eeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCc-EEEeeccCC------------ccceeE
Confidence 45667788999999987543 555566554 788999999999998 788877664 223456
Q ss_pred EeecCCCcccEEEEEEcCC-----CCEEEEEeCCCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDD-----SNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpD-----g~~LAtgS~DGTVhIwdl~~~g 360 (779)
.++| +|.+|+|+|| ++.+++|+..| +.++.-+-.|
T Consensus 110 df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 110 DFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 6655 4889999999 78899999999 7777544333
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.86 E-value=7 Score=43.11 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 267 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 267 Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
-.+.|-+|+|+++|.++|..|-.|..+.+||..++
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 34689999999999999999999999999999876
No 301
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.03 Score=64.14 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=61.4
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
.+..|.+|+..|.+++--.+..-+++||.|++ +++|.+++.-. ..++..+.++... +...|.++.|=.|-
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKT-VKLWSik~EgD-------~~~tsaCQfTY~a--Hkk~i~~igfL~~l 796 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKT-VKLWSIKPEGD-------EIGTSACQFTYQA--HKKPIHDIGFLADL 796 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCce-EEEEEeccccC-------ccccceeeeEhhh--ccCcccceeeeecc
Confidence 45778899999999876667777899999987 89999987511 1111122233321 22359999999999
Q ss_pred CEEEEEeCCCeEEEEec
Q 004015 340 NWIMISSSRGTSHLFAI 356 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl 356 (779)
+++|+ -||-+|+||-
T Consensus 797 r~i~S--cD~giHlWDP 811 (1034)
T KOG4190|consen 797 RSIAS--CDGGIHLWDP 811 (1034)
T ss_pred ceeee--ccCcceeecc
Confidence 98765 5899999995
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.60 E-value=4.4 Score=45.55 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=35.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCC--------E----EE-EEEcCcEEEEEeCCeEEEEeCCCCcEEEEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP--------I----YS-VRCSSRVVAICQAAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~--------V----~s-V~~s~rlLaVs~d~~I~IwD~~T~e~l~tl 118 (779)
+.|.-+|+.+|+.+.+.++..+ . .. +...+.+++++.++.++++|+.+++.+.+.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 4566778888887776654211 0 01 112455566677888999999988876654
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.47 E-value=0.14 Score=62.11 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=43.1
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEEE----------eCCeEEEEeCCCCcEE
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAIC----------QAAQVHCFDAATLEIE 115 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaVs----------~d~~I~IwD~~T~e~l 115 (779)
+-++|.+-|+++-+.+|++.. ...|.++...+++|+.+ .|.-|.|||++.++.+
T Consensus 195 t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 195 TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred ccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 348899999999999999985 67888888887776653 2446889999988744
No 304
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.32 E-value=0.11 Score=59.95 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR- 348 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D- 348 (779)
.=+.+.|||-|+||+|--..| |.+|--... ..+ +|-.+ ..|+-+.|||.-+||++=|.-
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G--I~lWGG~~f--------------~r~---~RF~H-p~Vq~idfSP~EkYLVT~s~~p 271 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG--IALWGGESF--------------DRI---QRFYH-PGVQFIDFSPNEKYLVTYSPEP 271 (698)
T ss_pred eeeeEEecCCceEEEEEeccc--eeeecCccH--------------HHH---HhccC-CCceeeecCCccceEEEecCCc
Confidence 346699999999999988887 789953321 222 22222 238999999999999987652
Q ss_pred ----------CeEEEEecCCCCCceeeccCCCCCCccCCCcCCcceecCCCC
Q 004015 349 ----------GTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNL 390 (779)
Q Consensus 349 ----------GTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s 390 (779)
..+.||||.++....+|..- +.+.++-+++||+..-
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~------~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLKRSFPVI------KSPYLKWPIFRWSHDD 317 (698)
T ss_pred cccCcccCCCceEEEEEccccchhcceecc------CCCccccceEEeccCC
Confidence 46899999987666565432 1244556788888764
No 305
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.14 E-value=0.14 Score=40.88 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=28.5
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.+.|..++|||....||+++.||.|.||+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999993
No 306
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.12 E-value=0.87 Score=52.38 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=41.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCC----eEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAA----QVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~----~I~IwD~~T~e~ 114 (779)
..+.++|+.+++....+.|...-..-+|+ ++.|+.+..+ .|+++|+.+.+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 46999999999998888888877777886 5777776543 799999998873
No 307
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.91 E-value=0.14 Score=60.72 Aligned_cols=104 Identities=10% Similarity=0.156 Sum_probs=76.5
Q ss_pred cccCCCCeEEEEECCCCcEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v-~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+-+...|.|.+|.-..+... ....+-.+.+..++.|++..+.|.|+..|. |-||.+....+.. ..|
T Consensus 49 ~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~~-----------~~~- 115 (726)
T KOG3621|consen 49 AMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPRD-----------LDY- 115 (726)
T ss_pred EEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCCc-----------cee-
Confidence 34556799999998776543 233345567888999999999999998887 8999887642111 112
Q ss_pred eecCCC--cccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 321 LQRGLT--NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 321 l~rG~t--~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+.+++. ...|++++||+|+..|.+|-+.|+|+.-.++.
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 223332 44599999999999999999999999988876
No 308
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=93.88 E-value=0.12 Score=56.74 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC--------------CcccEEEEE
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--------------TNAVIQDIS 334 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~--------------t~a~I~sIa 334 (779)
.-|+++.|+.+|.+||||+.+|+ +-+|.-.... .+.|+++... -.-+|..|.
T Consensus 26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~-------------~~ey~~~t~fqshepEFDYLkSleieEKinkIr 91 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKLY-------------KGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIR 91 (433)
T ss_pred cceeeEEeecccceEeecCCCCe-EEEeeccccc-------------ccceeeeeeeeccCcccchhhhhhhhhhhhhce
Confidence 46899999999999999999998 6787543320 0112221111 012378899
Q ss_pred EcCCCC--EEEEEeCCCeEEEEecCCCCC
Q 004015 335 FSDDSN--WIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 335 FSpDg~--~LAtgS~DGTVhIwdl~~~gg 361 (779)
|-+++. .+..++.|.|+++|.+...+.
T Consensus 92 w~~~~n~a~FLlstNdktiKlWKi~er~~ 120 (433)
T KOG1354|consen 92 WLDDGNLAEFLLSTNDKTIKLWKIRERGS 120 (433)
T ss_pred ecCCCCccEEEEecCCcceeeeeeecccc
Confidence 988776 477889999999999976543
No 309
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=93.88 E-value=0.18 Score=54.54 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=71.3
Q ss_pred ccccCCCCeEEEEECC-CCcEEEE-eccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 241 FPDADNVGMVIVRDIV-SKNVIAQ-FRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~-s~~~v~~-f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.++..||.+.-||++ .++.+.+ -+-|+..|.+|.=|| .+.+++||+-|-+ |++||.+.- .+.
T Consensus 181 vytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm-------------~kP 246 (339)
T KOG0280|consen 181 VYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM-------------GKP 246 (339)
T ss_pred EEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc-------------cCc
Confidence 3567889999999999 4555555 678999999999887 6999999999977 999998842 112
Q ss_pred EEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~gg 361 (779)
++.- ....-|+.|.++|--. .|..+.+..-.+|-+++..-.
T Consensus 247 l~~~---~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 247 LFKA---KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred cccC---ccccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 2211 1113388888888433 334444555566666655433
No 310
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.88 E-value=0.1 Score=61.63 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=74.7
Q ss_pred ccccCCCCeEEEEECCCC---------------cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC
Q 004015 241 FPDADNVGMVIVRDIVSK---------------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 305 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~---------------~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~ 305 (779)
++.+..+|.++|..+.+. ..-+++.+|...|.-+.|+.+-+.|-|.+.+|- |.||=+..+ .|.
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl-IiVWmlykg-sW~ 106 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL-IIVWMLYKG-SWC 106 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce-EEEEeeecc-cHH
Confidence 455667888888766542 123567899999999999999999999999995 899988765 221
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
..+.+ .| ....|.+++|..||+.|++.-.||.|.|=.+
T Consensus 107 ----------EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 107 ----------EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ----------HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 11111 12 1345899999999999999999998866443
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.76 E-value=0.45 Score=56.77 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=72.3
Q ss_pred CCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.-+-.|..||+++. .++..+..-...-+.++|+- ++..||+ ..|+.|+|||.+.+ + ..+..+.
T Consensus 134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas--shg~~i~vwd~r~g---s----------~pl~s~K 198 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS--SHGNDIFVWDLRKG---S----------TPLCSLK 198 (1081)
T ss_pred cccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh--ccCCceEEEeccCC---C----------cceEEec
Confidence 45668999999985 46666665556677899988 6777765 45778999999876 1 2344554
Q ss_pred cCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCC
Q 004015 323 RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 323 rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
+ +.+.|..++|.. .-..+.+.+.||||+.|+......
T Consensus 199 ~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 199 G--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred c--cceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 4 235688999854 334578999999999999977543
No 312
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.21 Score=58.67 Aligned_cols=59 Identities=17% Similarity=0.375 Sum_probs=51.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS-ALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~Is-aLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
++....+|.|.++-+. .+.+.+|.-|..+++ +++|.|||++||.|=.||+ |+|-|+..+
T Consensus 35 iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~ 94 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKG 94 (665)
T ss_pred hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCC
Confidence 4455678889998888 777889988888888 9999999999999999998 899999875
No 313
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.45 E-value=8.4 Score=44.97 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=42.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-------E--EEEEE-c-CcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP-------I--YSVRC-S-SRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~-------V--~sV~~-s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.-+|++||+.+.+.+.... + ..+.. . +++++.+.++.|+++|+.|++.+.+...
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 6688889999999988876432 1 12233 3 5556667889999999999999988864
No 314
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=93.18 E-value=1.1 Score=58.41 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=75.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS--~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+.||.+-+|.+. .++....++|....+...|=- .+|||++ .|+..+.+||..-. +.. .+.| +.
T Consensus 2269 ~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~-~~~--------s~v~--~~ 2334 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP-PMN--------SLVH--TC 2334 (2439)
T ss_pred eccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC-ccc--------ceee--ee
Confidence 3568899999887 667788899999999999876 6677764 46667999996542 111 2233 33
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+- ..+++++|.|.-+.|.+|+.+|.|.|||+....
T Consensus 2335 H~----~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2335 HD----GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cC----CCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 22 237899999999999999999999999997653
No 315
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.10 E-value=0.17 Score=57.96 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=66.9
Q ss_pred EECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEE
Q 004015 253 RDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 332 (779)
Q Consensus 253 wDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~s 332 (779)
|...+...-..|.+-.-++..++|||.|++|++....| |.+|.-... -.+.++. ...|..
T Consensus 17 ~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~~--------------~~l~~~~----~~~V~~ 76 (561)
T COG5354 17 WNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPSK--------------AKLVRFR----HPDVKY 76 (561)
T ss_pred ecCccccccccccccCcchhheeecCcchheehhhccc--eEEccccch--------------hheeeee----cCCcee
Confidence 55555555455556667999999999999999987765 899985543 1233332 245999
Q ss_pred EEEcCCCCEEEEEeCCCe---------------EEEEecCCCCCceee
Q 004015 333 ISFSDDSNWIMISSSRGT---------------SHLFAINPLGGSVNF 365 (779)
Q Consensus 333 IaFSpDg~~LAtgS~DGT---------------VhIwdl~~~gg~~~~ 365 (779)
+.|||.++||.+-+..+. +.|||+..+.-..++
T Consensus 77 ~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf 124 (561)
T COG5354 77 LDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF 124 (561)
T ss_pred cccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec
Confidence 999999999999887665 889999775433343
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=93.03 E-value=0.36 Score=56.41 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=48.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
.++-++.||.|++||...+. .++..+.-..+.++|+|+|.+++.|+..|. +.+||+.-.
T Consensus 273 kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred eEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence 45678899999999998763 333344456788999999999999999997 899998765
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.91 E-value=1.6 Score=45.60 Aligned_cols=98 Identities=27% Similarity=0.335 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCCCCE-----EEEEeCCCCCCCCCCccCCCCceeE
Q 004015 248 GMVIVRDIVSKNVIAQFRA-----HKSPISALCFDPSGILLVTASVQGHN-----INIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~a-----Ht~~IsaLaFSPdG~lLATaS~DGt~-----I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.+.++|+.+++....+.. .....+.++++|+|.+.+|-+..... =.||.+.+. + ....
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~---------~~~~ 128 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--G---------KVTV 128 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--S---------EEEE
T ss_pred CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--C---------eEEE
Confidence 3456669888754333332 33567889999999999987754210 135554432 0 1122
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LA-tgS~DGTVhIwdl~~~gg 361 (779)
+. .+. .....|+|+||++.|. +-+..+.|..|++...+.
T Consensus 129 ~~---~~~--~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 129 VA---DGL--GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EE---EEE--SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred Ee---cCc--ccccceEECCcchheeecccccceeEEEecccccc
Confidence 21 221 1257899999999775 567788999999976554
No 318
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.89 E-value=0.22 Score=54.13 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=69.9
Q ss_pred cccccCCCCeEEEEECCCCc----------------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKN----------------VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL 303 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~----------------~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~ 303 (779)
.|.-....|.|++-|++... -+.-|..-..+|+.++|+++|+|+++-+-- .++|||+... .
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~-k 312 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMA-K 312 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEecccc-c
Confidence 44455678999999998421 112233445789999999999999986654 4999998764 1
Q ss_pred CCCCccCCCCceeEEEEe--ec--------CCCcccE---EEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 304 GTSSACDAGTSYVHLYRL--QR--------GLTNAVI---QDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 304 g~~s~~~~~~s~~~l~~l--~r--------G~t~a~I---~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
..+.+. +- -..+.-| ..|.||-|.+.+.+||.....-||...+
T Consensus 313 ------------~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 313 ------------NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ------------CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 111111 00 0000112 3689999999999999999988888544
No 319
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=92.76 E-value=1.8 Score=48.54 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=47.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
++++++.|+.|+|-.+..--.+..|. +|+.-|+.|+.-++ .+|++||.|+| +++||+..+
T Consensus 165 ~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~sg 225 (390)
T KOG3914|consen 165 FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITSG 225 (390)
T ss_pred EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEecccC
Confidence 34566778888887666655666666 89999999998765 45999999998 899999986
No 320
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.69 E-value=1.2 Score=53.58 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=74.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC---CC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP---SG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP---dG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.++-.|.|.|||+.....+..|..|.++|..|+|=+ +. .+|+.-..-. .+-+|+..+| ..
T Consensus 83 AsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss-~lvLwntdtG--------------~k 147 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS-TLVLWNTDTG--------------EK 147 (1062)
T ss_pred EeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc-EEEEEEccCC--------------ce
Confidence 4556679999999999999999999999999999865 34 3444333333 4899998876 45
Q ss_pred EEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCC
Q 004015 318 LYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
+++...++ -...|+.|.| |.+.|..-+..|.+.+-+.-.
T Consensus 148 ~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 148 FWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred eeccccCC--cceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 56554432 1255689998 889999999999988877643
No 321
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=92.55 E-value=0.22 Score=56.84 Aligned_cols=116 Identities=18% Similarity=0.291 Sum_probs=71.7
Q ss_pred cccccCCCCeEEEEECCCC------cEEEEeccCC------CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSK------NVIAQFRAHK------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSS 307 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~------~~v~~f~aHt------~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s 307 (779)
.|+.+..+--++|||.+.- .++.+|..|. --|+|++|+.+|.-|.++-.|-. |.+|.-.-+ .|+..
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~-~G~~p 373 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMG-DGSEP 373 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEeccccc-cCCCC
Confidence 3455667778899998752 2455555442 36999999987664444444433 788843221 22111
Q ss_pred c-cCCC-CceeEEEEeecCCCccc-EEEEEE-cCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 308 A-CDAG-TSYVHLYRLQRGLTNAV-IQDISF-SDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 308 ~-~~~~-~s~~~l~~l~rG~t~a~-I~sIaF-SpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
- ..+. ..+..+|+-+| +.. |..+-| -|.+.|+++||+=|.|.||+-+...
T Consensus 374 ~~~s~~~~~~k~vYKGHr---N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHR---NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred CCCcchhhccchhhcccc---cccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 0 0001 12233355444 333 888876 8999999999999999999987753
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.24 E-value=1.4 Score=52.75 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=66.9
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCCE-----------EEEEeCCCC----CCC-
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS---VQGHN-----------INIFKIIPG----ILG- 304 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS---~DGt~-----------I~Vwdi~~~----~~g- 304 (779)
....+.+.+.|..+.+++.++.--. .-..+.|+|||+++.+.+ +.|.. +.+|++... ..|
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 3456889999999988888876433 335689999999998775 33222 223332210 000
Q ss_pred ------C-CCccCCCC----ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCC
Q 004015 305 ------T-SSACDAGT----SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLG 360 (779)
Q Consensus 305 ------~-~s~~~~~~----s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~g 360 (779)
. .+.-+... ....++.+.-|. ....|++||||+|+.+++. +.+|.|.|+....
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 0 00000000 011223332232 2468999999999877765 8999999998854
No 323
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.13 E-value=15 Score=42.08 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=40.3
Q ss_pred CCEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CcEEEEEeCCeEEEEeCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQAAQVHCFDAA 110 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~-s~V~sV~~s--~rlLaVs~d~~I~IwD~~ 110 (779)
|..|+||+. +|+.+.++.++ +.|..+.|+ .++|+|..++.+++||+.
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 347999998 68889999884 789999995 678888999999999987
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.65 Score=52.81 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=77.2
Q ss_pred CCCCeEEEEECCCCc-EEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKN-VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~-~v~~f-~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
-.+|.|.|+|-.... .+..| +-|..||.++.+++.|...++.+..|- |.-|.......-+.-.- .....+--.|
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qfPr~~l--~~~~K~eTdL- 194 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQFPRTNL--NFELKHETDL- 194 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccCccccc--cccccccchh-
Confidence 356889999977654 33344 479999999999999999999998885 89998763100000000 0011110011
Q ss_pred cCCCcc--cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 323 RGLTNA--VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 323 rG~t~a--~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.+...+ ...++.|||+|..+++-+.|.+|++|....+.-.
T Consensus 195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred hcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 122222 2689999999999999999999999999875433
No 325
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=91.11 E-value=4.3 Score=46.71 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
-|.+.|.+.-.+-.++ .+|.+.|....|.-+++-++.|..||..+-|||...+ ...++..+.
T Consensus 340 RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---------------e~kr~e~~l- 401 (668)
T COG4946 340 RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---------------EVKRIEKDL- 401 (668)
T ss_pred cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---------------eEEEeeCCc-
Confidence 3555555544443332 2677889999999999999999999988999998875 222333332
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
..|..+..||||++++++..+..+-+.|+..+.
T Consensus 402 -g~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 402 -GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred -cceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 348999999999999999999999999998753
No 326
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.97 E-value=0.57 Score=37.38 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
..|.+++|+|...+||.++.+|. |.||++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 57999999999999999999998 899988
No 327
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.61 E-value=4.3 Score=50.12 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=44.8
Q ss_pred CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 239 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 239 g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
|+++.++.+|.||+||-...+....|++-..||..|..+.||++|+..+. +.+.|++..
T Consensus 589 G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 589 GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 35666788999999996655555667788899999999999997654443 347777754
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.34 E-value=12 Score=43.52 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 280 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 280 G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
|.+|+..+.+ .|.+||..++ ..+.++. -..|..|.||+|++++|..+.+ ++.|++.+.
T Consensus 117 G~LL~~~~~~--~i~~yDw~~~--------------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 117 GNLLGVKSSD--FICFYDWETG--------------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SSSEEEEETT--EEEEE-TTT----------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcEEEEECCC--CEEEEEhhHc--------------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 9988888766 4899999875 3344432 2238899999999999999866 677776644
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=2.2 Score=51.60 Aligned_cols=106 Identities=20% Similarity=0.358 Sum_probs=71.2
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-----CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-----GILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-----G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.+++.+.||+|.|-.+.+.+...++.= .-||.+++|+|| .+.+++|+..| +-++.-.- .|.- .+
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~w--lgnk------~~ 153 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNW--LGNK------DS 153 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce--EEEehhhh--hcCc------cc
Confidence 456677899999998888766554432 358999999999 67888988887 45554221 1110 01
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+ .++-+ ...|.+|+|. |.++|=++++| |+|||+........+
T Consensus 154 v----~l~~~--eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 154 V----VLSEG--EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred e----eeecC--ccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence 1 22222 2359999997 77888888777 799999876554444
No 330
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=90.14 E-value=0.35 Score=51.67 Aligned_cols=94 Identities=15% Similarity=0.270 Sum_probs=62.5
Q ss_pred CeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
+..++|+++-.+.+. ..++- ..|++++-.|.- .++++|+.||- +-|||.+.. ... ..++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~---~~p--------~S~l~a---- 221 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNV---AMP--------VSLLKA---- 221 (319)
T ss_pred cceeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCe-EEEEEcccc---cch--------HHHHHH----
Confidence 345566665433221 11222 349999999964 46677777775 999998864 100 112221
Q ss_pred CcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCC
Q 004015 326 TNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 326 t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
+.+.|+.|-|.| ++..|.+++.||.+--||-+.
T Consensus 222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 235699999999 788999999999999999875
No 331
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=90.09 E-value=0.33 Score=55.45 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=65.6
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC--
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-- 337 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-- 337 (779)
....|..|.+-|+.|.|+..|+.|+|+|+|.+ |.+||-... .....+.-|+... |...-|-|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~-vv~WdW~~~--------------~~~l~f~SGH~~N-vfQaKFiP~s 197 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQ-VVVWDWVSG--------------SPKLSFESGHCNN-VFQAKFIPFS 197 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccce-EEeehhhcc--------------Ccccccccccccc-hhhhhccCCC
Confidence 44567899999999999999999999999976 899997654 2234555666544 33333654
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCCce
Q 004015 338 DSNWIMISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~~gg~~ 363 (779)
+.+-+++++.||-+++=.+-..+...
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e 223 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVE 223 (559)
T ss_pred CCcCceeccccCceeeeeecccccee
Confidence 45678899999999998886655443
No 332
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=0.72 Score=57.20 Aligned_cols=58 Identities=19% Similarity=0.441 Sum_probs=41.6
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 243 DADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
-+..-|.|...|.... .+...=..-.++|++++|+.||++|+.|=.+|+ |.+||+...
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~ 162 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRA 162 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCC
Confidence 3445567777776653 111111122479999999999999999999998 899999874
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.63 E-value=0.82 Score=50.89 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=48.1
Q ss_pred CCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc----CcEEEEEe-CCeEEEEeCCCCcEEEEEec
Q 004015 57 GNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAICQ-AAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 57 ~~~~~~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s----~rlLaVs~-d~~I~IwD~~T~e~l~tl~t 120 (779)
++.+...+.|=+||++|++.|..+....++.+|..+ ..++++.. ++.+++||+.|++.+.++..
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 344445578999999999999999998899899996 34556654 67899999999999999864
No 334
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.90 E-value=0.23 Score=60.12 Aligned_cols=106 Identities=12% Similarity=0.196 Sum_probs=82.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC-EEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH-NINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+++-+...|.|++|++.+|....+..+|.++|+-|.=+.||.+++|.|.-.. ..-+|++... .+ -+|.
T Consensus 1115 hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-~~----------~~Hs 1183 (1516)
T KOG1832|consen 1115 HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-GG----------PRHS 1183 (1516)
T ss_pred eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc-cC----------cccc
Confidence 5667788999999999999999999999999999999999998888776543 4568887542 11 1332
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
| ++ =.++-||...++-+.|+....++|||+.+.....+
T Consensus 1184 f---~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1184 F---DE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred c---cc-----cceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 2 22 23688998888888999889999999988655444
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=87.87 E-value=2.1 Score=49.27 Aligned_cols=95 Identities=26% Similarity=0.394 Sum_probs=60.3
Q ss_pred CeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEE--eCCCCCCCCCCccCCCCceeEEEEee
Q 004015 248 GMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 248 G~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPdG~lLATaS-~DGt~I~Vw--di~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
..+.++|+.+++ .+..+.++.. .-+|+|||+.||-++ .||. ..|| |+... . +.+|.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~-~~iy~~dl~~~------------~---~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGS-PDIYLMDLDGK------------N---LPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCC-ccEEEEcCCCC------------c---ceecc
Confidence 468899998764 4555666554 478999999877554 4554 4555 54432 1 22232
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCCce
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSV 363 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~gg~~ 363 (779)
.+... -..=.|||||++|+-.|++ |.-.||-+...++.+
T Consensus 279 ~~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 279 NGFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 32211 1256799999999877765 566777777766654
No 336
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.68 E-value=1.2 Score=35.00 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=25.9
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCCEEEEEeCCC
Q 004015 269 SPISALCFDPS-G--ILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 269 ~~IsaLaFSPd-G--~lLATaS~DGt~I~Vwdi~~ 300 (779)
++|.+++|||+ + .+||.+-..|. |+|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 47899999985 4 59998888887 89999984
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.26 E-value=1.5 Score=48.81 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=59.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.+.+.|||+.+++....... ...+....|||+|+.||-... +.|.++++..+.... -..+... . ++ .|..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~-lT~dg~~--~-i~---nG~~ 91 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQ-LTTDGEP--G-IY---NGVP 91 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEE-SES--TT--T-EE---ESB-
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEE-eccccce--e-EE---cCcc
Confidence 36799999999765443333 678899999999999998874 358888776541000 0000000 0 00 0110
Q ss_pred --------cccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCC
Q 004015 327 --------NAVIQDISFSDDSNWIMISSSR-GTSHLFAINPL 359 (779)
Q Consensus 327 --------~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~ 359 (779)
-..-..+-|||||++||....| ..|+.+.+-.+
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~ 133 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY 133 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc
Confidence 0011358899999999987654 45666666444
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.06 E-value=6.2 Score=37.30 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=44.2
Q ss_pred eEEEEE---cCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe
Q 004015 271 ISALCF---DPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 271 IsaLaF---SPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS 346 (779)
|++|++ +-||. -|+.||.|.. |+||+-.. .++.+.. ...|++++=... ..|+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~e----------------~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGDE----------------IVAEITE---TDKVTSLCSLGG-GRFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCCc----------------EEEEEec---ccceEEEEEcCC-CEEEEEe
Confidence 455555 44544 7888999965 99998542 3444432 245888887776 5688999
Q ss_pred CCCeEEEEec
Q 004015 347 SRGTSHLFAI 356 (779)
Q Consensus 347 ~DGTVhIwdl 356 (779)
..|||-||+-
T Consensus 61 ~NGTVGvY~~ 70 (111)
T PF14783_consen 61 ANGTVGVYDR 70 (111)
T ss_pred cCCEEEEEeC
Confidence 9999877654
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=86.40 E-value=60 Score=37.94 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=38.7
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-E------------E---------EEEE--cCcEEEEEe-C-----------------
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP-I------------Y---------SVRC--SSRVVAICQ-A----------------- 101 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~-V------------~---------sV~~--s~rlLaVs~-d----------------- 101 (779)
+.|.-+|+.||+.+...++..+ . + ...+ .+.+|.++. +
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~ 254 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLY 254 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCc
Confidence 5688889999999998877311 0 1 1122 234555543 2
Q ss_pred -CeEEEEeCCCCcEEEEEec
Q 004015 102 -AQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 102 -~~I~IwD~~T~e~l~tl~t 120 (779)
+.|+.+|+.|++.+.+...
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeC
Confidence 2799999999999988754
No 340
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=86.37 E-value=1.8 Score=47.36 Aligned_cols=86 Identities=23% Similarity=0.369 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCc----cCC-CCceeEEEEeecCCCcccEEEEEEcCCCC--E
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA----CDA-GTSYVHLYRLQRGLTNAVIQDISFSDDSN--W 341 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~----~~~-~~s~~~l~~l~rG~t~a~I~sIaFSpDg~--~ 341 (779)
.-|+++.|+..|.|||||+..|+ +-+|.-... .++..- ++. +.....|..+. ..-+|..|.|-.++. .
T Consensus 27 d~ItaVefd~tg~YlatGDkgGR-Vvlfer~~s-~~ceykf~teFQshe~EFDYLkSle---ieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGR-VVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLE---IEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEeccccceEeecCCCce-EEEeecccc-cccchhhhhhhcccccchhhhhhcc---HHHHhhheeeecCCCcce
Confidence 46899999999999999999888 778864332 111110 000 00000011111 112377888877655 4
Q ss_pred EEEEeCCCeEEEEecCCC
Q 004015 342 IMISSSRGTSHLFAINPL 359 (779)
Q Consensus 342 LAtgS~DGTVhIwdl~~~ 359 (779)
+..++.|.||++|.+-..
T Consensus 102 FLlstNdktiKlWKiyek 119 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred EEEecCCceeeeeeeecc
Confidence 778889999999999543
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.14 E-value=3.4 Score=50.49 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=73.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEcCCCCEEEEEeCCCC----EEEEEeCCCCCCCCCCccCCCCce
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFDPSGILLVTASVQGH----NINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~-IsaLaFSPdG~lLATaS~DGt----~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
++-+..+|.|.+++- +.+.+..|++|... |.-|....+-.+|++-..|+. .++||++.... ++.+ + .+
T Consensus 38 vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-~n~s---P--~c 110 (933)
T KOG2114|consen 38 VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-KNNS---P--QC 110 (933)
T ss_pred EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-CCCC---c--ce
Confidence 445667787766653 23455889999888 555655555579999988887 79999998642 2211 0 11
Q ss_pred e---EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 316 V---HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 316 ~---~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
. .++.+.-+..+.++.+++.|-|=+.+|+|-.+|+|..+.
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 1 223323333345588999999999999999999999874
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=86.14 E-value=1.1 Score=54.26 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCCCeEEEEECCCCcEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKNVIAQF--RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f--~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
...|.|.|| ..++++.... +-| +++|||.|.--+||.+=..|- +.||...+. ...++.
T Consensus 38 er~GSVtIf-adtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~-~~v~~~~~~---------------e~htv~ 97 (1416)
T KOG3617|consen 38 ERGGSVTIF-ADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGV-SDVQKTNTT---------------ETHTVV 97 (1416)
T ss_pred CCCceEEEE-ecCCCCCccccccee---hhhhccChHHHHHhhccccce-eEEEecCCc---------------eeeeec
Confidence 345778777 3445543322 122 445999999999999988886 899986542 122322
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
- .+++.|+-+.|||||..+.++..-|.+|+|++...|.
T Consensus 98 ~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 98 E-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred c-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 2 2356799999999999999999999999999976543
No 343
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.79 E-value=1.1 Score=55.53 Aligned_cols=79 Identities=10% Similarity=0.186 Sum_probs=55.5
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC-CcccEEEEEEcCCCCEEEEEeCCCeE
Q 004015 273 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISFSDDSNWIMISSSRGTS 351 (779)
Q Consensus 273 aLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~-t~a~I~sIaFSpDg~~LAtgS~DGTV 351 (779)
.++----+..+|.++..|+ +-.+|.... +.-++++. ....|.++||+.||++++.|-.+|-|
T Consensus 92 v~s~a~~~~~ivi~Ts~gh-vl~~d~~~n----------------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGH-VLLSDMTGN----------------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eeeeeeeeeeEEEEcCchh-hhhhhhhcc----------------cchhhcCCccCCcceeeEecCCCceeccccCCCcE
Confidence 3443345678899998888 677776542 11122322 23459999999999999999999999
Q ss_pred EEEecCCCCCceeeccC
Q 004015 352 HLFAINPLGGSVNFQPT 368 (779)
Q Consensus 352 hIwdl~~~gg~~~~~~H 368 (779)
.+||++.......+..|
T Consensus 155 ~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVITEH 171 (1206)
T ss_pred EEEEccCCcceeeeeec
Confidence 99999886555444433
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.59 E-value=66 Score=38.23 Aligned_cols=53 Identities=15% Similarity=0.331 Sum_probs=37.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
-|.+.=+|+.+++.+..++......... +.-.|.++..++.+|. ++.||..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~-l~a~D~~TG 492 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGY-FKAFDAKTG 492 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCe-EEEEECCCC
Confidence 4788889999999988876432212221 1125567777888987 899999987
No 345
>PRK13616 lipoprotein LpqB; Provisional
Probab=85.50 E-value=5.7 Score=47.75 Aligned_cols=83 Identities=7% Similarity=0.061 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC----CcccEEEEEEcCCCCEEEEE
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL----TNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~----t~a~I~sIaFSpDg~~LAtg 345 (779)
..++-.|+|||+.|++.+.....+++.+-... +. ..+..+.-|. ....|.++.|||||++||..
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~-----------gq-l~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT-----------GQ-LARTPVDASAVASRVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCC-----------ce-EEEEeccCchhhhccCCCcCeEEECCCCCEEEEE
Confidence 37888999999999998754343444332111 00 1111221111 12249999999999999987
Q ss_pred eCCCeEEEEecCC-CCCceee
Q 004015 346 SSRGTSHLFAINP-LGGSVNF 365 (779)
Q Consensus 346 S~DGTVhIwdl~~-~gg~~~~ 365 (779)
. +|.|+|=-+.. .+|...+
T Consensus 466 ~-~g~v~Va~Vvr~~~G~~~l 485 (591)
T PRK13616 466 I-GGKVYLAVVEQTEDGQYAL 485 (591)
T ss_pred E-CCEEEEEEEEeCCCCceee
Confidence 6 57777744433 3444343
No 346
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.29 E-value=5 Score=48.22 Aligned_cols=96 Identities=16% Similarity=0.335 Sum_probs=67.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+.+.+|.|.||=+-.+.-...+. ..++-|.+|+|+-||+.++.+-.||. |.|=.+.-. .++
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvdGN---------------RIw 150 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVDGN---------------RIW 150 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeeccc---------------eec
Confidence 345678999999988775443333 23456889999999999998888887 444433221 111
Q ss_pred --EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 320 --RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 320 --~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.| .|.. ...+.||+|.+.+..+-..|.+|+||-.
T Consensus 151 gKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 151 GKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred chhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 11 1211 3467899999999999999999999974
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.15 E-value=28 Score=37.77 Aligned_cols=57 Identities=9% Similarity=0.111 Sum_probs=43.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEE---EEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEe
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIY---SVRCSSRVVAI-CQAAQVHCFDAATLEIEYAIL 119 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~---sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~ 119 (779)
.+.+.|.+.+||+.+..+.--..|. -+.+++.++-. +.|++.|+.|..+..++++.+
T Consensus 72 ~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 72 SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 4678999999998888776544432 23446666665 788999999999999999864
No 348
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.69 E-value=18 Score=44.57 Aligned_cols=93 Identities=13% Similarity=0.228 Sum_probs=58.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCcc-CCCCceeE-EEEe----ecCCCcccEEEEEEcCC---C
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC-DAGTSYVH-LYRL----QRGLTNAVIQDISFSDD---S 339 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~-~~~~s~~~-l~~l----~rG~t~a~I~sIaFSpD---g 339 (779)
-.|..|.+||+|++||-++..| |-|-.+... .|..+.. +......+ .+.+ .+......|..+.|.|. +
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r-~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRR-WGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccc-cCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 4688899999999999999886 556666421 1111100 00011111 1111 12223345999999997 4
Q ss_pred CEEEEEeCCCeEEEEecCCCCCcee
Q 004015 340 NWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
..|++=++|+++++||+.....+..
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeE
Confidence 8999999999999999986555443
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.67 E-value=71 Score=35.50 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=41.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEe
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAIL 119 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~ 119 (779)
...+.|||+.+++..........+....++ ++.||...++.|+++++.+. ....|+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~~~lT 79 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG-QETQLT 79 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTS-EEEESE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCC-CeEEec
Confidence 367899999998754433335678888886 78999999999999999888 334443
No 350
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=5.5 Score=45.65 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=64.2
Q ss_pred EECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC-----CCCC--ccCCCCceeE-EEEeecC
Q 004015 253 RDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GTSS--ACDAGTSYVH-LYRLQRG 324 (779)
Q Consensus 253 wDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~-----g~~s--~~~~~~s~~~-l~~l~rG 324 (779)
|.++...-+..|.--.+..+++.|+|+|..+++-+.|-+ |++|++.++-. ...+ ...+...... -..|.|.
T Consensus 186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR 264 (558)
T KOG0882|consen 186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR 264 (558)
T ss_pred ccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccchhhhhhhccchhhhhccccccccceeehhhh
Confidence 334444445555555677899999999999999988855 99999887611 1100 0000000000 0011111
Q ss_pred ---------CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 325 ---------LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 325 ---------~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+...+-..++|...|+||..++.=| |+|+++.+..
T Consensus 265 maverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 265 MAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred hhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 1112245789999999999998776 7888887753
No 351
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.26 E-value=6.8 Score=45.04 Aligned_cols=91 Identities=16% Similarity=0.329 Sum_probs=59.6
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEE-EcCC
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS-FSDD 338 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIa-FSpD 338 (779)
+...|....-.+.+|+.+|+|++.|+.+.-|+ |.|+|+..+ .+.++++ |...|.+.-+- +...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~------------~vvrmWK---GYRdAqc~wi~~~~~~ 362 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVARG------------IVVRMWK---GYRDAQCGWIEVPEEG 362 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCCC------------hhhhhhc---cCccceEEEEEeeccc
Confidence 34456666667899999999999999988898 899999876 2233333 33333321111 1111
Q ss_pred ----------------CCE-EEEEeCCCeEEEEecCCCCCceeec
Q 004015 339 ----------------SNW-IMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 339 ----------------g~~-LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
..+ ++-+-.+|.+.||.+..+.....++
T Consensus 363 ~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 363 DRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 123 4456679999999998876666654
No 352
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.11 E-value=2.7 Score=50.56 Aligned_cols=107 Identities=11% Similarity=0.205 Sum_probs=73.7
Q ss_pred eEEEEECCC---CcEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 249 MVIVRDIVS---KNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 249 ~V~VwDl~s---~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
.-.||.+.. ..+-.-+-+|+..|+.+.|+|.- ..|||++.|-. ++.||++.. ...+|.+.--
T Consensus 92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~-vh~wd~rSp-------------~~p~ys~~~w 157 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY-VHAWDMRSP-------------HRPFYSTSSW 157 (1081)
T ss_pred hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccc-ceeeeccCC-------------Ccceeeeecc
Confidence 345677763 23334456999999999999975 48999999954 999999763 1233433211
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCce-eeccCCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDAN 371 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~-~~~~H~~~ 371 (779)
.+. -..+.|+.-.-.+.+.+..+-|.|||+..++-+. ++++|...
T Consensus 158 ~s~--asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~ 203 (1081)
T KOG0309|consen 158 RSA--ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS 203 (1081)
T ss_pred ccc--CceeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee
Confidence 111 2468898866667777788889999998776554 45777654
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.92 E-value=41 Score=37.81 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=40.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeC-CCCEEEEEeCCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASV-QGHNINIFKIIPG 301 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~-DGt~I~Vwdi~~~ 301 (779)
.|-+||+.+++.++.+.. ..+|.+|+.+.|.+ +|.+.+. +|. +.|||..++
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tG 322 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATG 322 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT-
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCC
Confidence 788899999999998873 23688999999988 6655554 555 899999886
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=83.79 E-value=7.6 Score=44.39 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=55.6
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee--c----CCCcccEEE
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--R----GLTNAVIQD 332 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~--r----G~t~a~I~s 332 (779)
.++.-+....++|++|+.|.=| ++|.|..+|+ +-|.|++-. ..+|+-. . ......|++
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGP--------------avI~~~~i~~~~~~~~~~~~vt~ 140 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGP--------------AVIYNENIRESFLSKSSSSYVTS 140 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTT--------------EEEEEEEGGG--T-SS----EEE
T ss_pred CchhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCC--------------eEEeeccccccccccccccCeeE
Confidence 3555566668999999998666 8999999997 899999643 2333321 1 112234888
Q ss_pred EEEcC-----CC---CEEEEEeCCCeEEEEecCC
Q 004015 333 ISFSD-----DS---NWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 333 IaFSp-----Dg---~~LAtgS~DGTVhIwdl~~ 358 (779)
|.|+- |+ -.+.+|+..|++.+|.|-+
T Consensus 141 ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 141 IEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 88873 33 4688999999999999975
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.29 E-value=10 Score=42.75 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCC---EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE
Q 004015 270 PISALCFDPSGILLVTA-SVQGH---NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATa-S~DGt---~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg 345 (779)
.+...++||||++||-+ +..|. .++|+|+.++ ..+-. +........++|++|++.|...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--------------~~l~d---~i~~~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--------------KFLPD---GIENPKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--------------EEEEE---EEEEEESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--------------cCcCC---cccccccceEEEeCCCCEEEEE
Confidence 45578999999998855 44443 5899999876 22211 1111122349999999988777
Q ss_pred eCCC-----------eEEEEecCCCCC
Q 004015 346 SSRG-----------TSHLFAINPLGG 361 (779)
Q Consensus 346 S~DG-----------TVhIwdl~~~gg 361 (779)
..+. .|+.|++.+...
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~ 214 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQS 214 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GG
T ss_pred EeCcccccccCCCCcEEEEEECCCChH
Confidence 6544 266666655433
No 356
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.49 E-value=51 Score=42.31 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..|+|||-. +..-.+=..-.+-=.+|+|=|+|.++|+--. |++ |.+|.-. | --+--+.+.+-
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffErN-G------------L~hg~f~l~~p 286 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFERN-G------------LRHGEFVLPFP 286 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEecC-C------------ccccccccCCc
Confidence 689999987 3221111112223346999999999998643 333 7777632 2 01112333332
Q ss_pred CCcccEEEEEEcCCCCEEEEE---eCCCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMIS---SSRGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtg---S~DGTVhIwdl~~~ 359 (779)
....+|..++|+.++..||+- .....|.+|-+..|
T Consensus 287 ~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 222238899999999999983 33445999988775
No 357
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=81.33 E-value=18 Score=45.90 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=52.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 268 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 268 t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
...|.++.|-++...|+.+..+|. |-++...+. .. ......+-.+ ...|.+++||||...||..+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gd-i~~~~~~~~-~~-------~~~~E~VG~v-----d~GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGD-IILVREDPD-PD-------EDEIEIVGSV-----DSGILAASWSPDEELLALVTG 140 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCce-EEEEEccCC-CC-------CceeEEEEEE-----cCcEEEEEECCCcCEEEEEeC
Confidence 468999999999998888888997 455522111 00 0122333333 334999999999999999999
Q ss_pred CCeEEEEe
Q 004015 348 RGTSHLFA 355 (779)
Q Consensus 348 DGTVhIwd 355 (779)
++++.+-.
T Consensus 141 ~~~l~~mt 148 (928)
T PF04762_consen 141 EGNLLLMT 148 (928)
T ss_pred CCEEEEEe
Confidence 99998864
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=80.97 E-value=40 Score=37.32 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=57.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~-~~l~~l~rG~ 325 (779)
.+.|.-||..+++. ..|......-..+.++..|.++++ .+| +.+++...+ .. ..+.....+.
T Consensus 46 ~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~--~~g--~~~~~~~~~------------~~~t~~~~~~~~~ 108 (307)
T COG3386 46 GGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIAC--EHG--VRLLDPDTG------------GKITLLAEPEDGL 108 (307)
T ss_pred CCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEE--ccc--cEEEeccCC------------ceeEEeccccCCC
Confidence 35677777765532 333333333344666777755544 333 567777543 12 2334444454
Q ss_pred CcccEEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCCCceee
Q 004015 326 TNAVIQDISFSDDSNWIMISSS---------RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~---------DGTVhIwdl~~~gg~~~~ 365 (779)
......++...|||++.++.-. ..+-.||.+.+.+....+
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 4455779999999998776555 223467777765444444
No 359
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=79.84 E-value=5.4 Score=31.46 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=25.4
Q ss_pred EEEEEEcCCCC---EEEEEeCCCeEEEEecCC
Q 004015 330 IQDISFSDDSN---WIMISSSRGTSHLFAINP 358 (779)
Q Consensus 330 I~sIaFSpDg~---~LAtgS~DGTVhIwdl~~ 358 (779)
|.++.|||+.. +||.+-..|.|||+|+..
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999998555 899999999999999984
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=79.72 E-value=14 Score=44.42 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=68.5
Q ss_pred CCeEEEEECCC-----CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 247 VGMVIVRDIVS-----KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 247 dG~V~VwDl~s-----~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++.|.|.|..+ .+.+..+.-- ...-.|.+||||++|+.++.-...+.|+|+......-..--++...+. .+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv--aev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV--AEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE--Eee
Confidence 46799999988 4566655522 234568999999999888875556999998764100000000011111 122
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.-|.. -.-.+|.++|.-..+-..|..|-.|++..
T Consensus 372 evGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCC---cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22432 24689999999888888999999999976
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=78.74 E-value=32 Score=38.90 Aligned_cols=94 Identities=15% Similarity=0.220 Sum_probs=64.8
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ--GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D--Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
...|.+.|..+.+.+..+.-=. .-..++|+|+|+.+-.+... ...+.++|..+. ..+.....|
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--------------~~~~~~~vG 159 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--------------KVTATIPVG 159 (381)
T ss_pred CCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--------------eEEEEEecC
Confidence 5788999988777766554211 44569999999877666652 244777776654 233345556
Q ss_pred CCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 358 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~ 358 (779)
..+ ..++|+|+|+.+.... .++++.+++...
T Consensus 160 ~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 160 NTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred CCc---ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 533 6899999999766665 789999999543
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=78.40 E-value=10 Score=45.60 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=59.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.+.+.+.++..+.... ...+.|+.++|||||+.||... +|+ |.|=-+.....|. ..+.....+..+..
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~-------~~l~~~~~l~~~l~ 496 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQ-------YALTNPREVGPGLG 496 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCc-------eeecccEEeecccC
Confidence 4566666776665433 3456799999999999888766 354 5553332210111 01111122222222
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
. .+.+++|..|+.. +++..++...||.+.-.|..
T Consensus 497 ~-~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 497 D-TAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred C-ccccceEecCCEE-EEEecCCCCceEEEecCCcc
Confidence 1 2578999999995 46676776778887665443
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.47 E-value=1.2e+02 Score=33.08 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=42.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~s--V~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.+.-.|.++|.++..-....+|.. +.+++.+++.+..+.+|+.+..|++..+.+..
T Consensus 33 ~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 6688889999999887655544433 33345555558999999999999987776654
No 364
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=76.44 E-value=52 Score=31.19 Aligned_cols=88 Identities=14% Similarity=0.207 Sum_probs=59.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+..++.|..|+||+-. ..+..+..+ ..|++|+-... ..++.|-..|+ |-||+-. ..+|+
T Consensus 18 LlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~----------------~RlWR 76 (111)
T PF14783_consen 18 LLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS----------------QRLWR 76 (111)
T ss_pred EEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc----------------ceeee
Confidence 4456789999999854 567777654 46777776666 56899999998 8999853 24555
Q ss_pred eecCCCcccEEEEEEcCCC---C-EEEEEeCCCeEE
Q 004015 321 LQRGLTNAVIQDISFSDDS---N-WIMISSSRGTSH 352 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg---~-~LAtgS~DGTVh 352 (779)
... ...+.++++..-. . -|++|=++|.|-
T Consensus 77 iKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 542 2336666654432 2 577888888764
No 365
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=75.03 E-value=5.7 Score=48.61 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=47.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
+.+-.-|.+.+|...+.+.-..-..|+.+|.-|.|||+|+.|+|++.-|- +++|...
T Consensus 75 a~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred hhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence 34456689999998877655555589999999999999999999999986 8999765
No 366
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=74.68 E-value=17 Score=35.63 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCCCEEEEEEc-------CcEEEEEeCCeEEEEeCCCCcEEEEE
Q 004015 73 SQSYVHMLKFRSPIYSVRCS-------SRVVAICQAAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 73 Tge~V~tLkf~s~V~sV~~s-------~rlLaVs~d~~I~IwD~~T~e~l~tl 118 (779)
....+..|.+...|.+|+.- .+.|.++....+.+||+..-..++.-
T Consensus 37 ~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 37 QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYK 89 (136)
T ss_pred ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhh
Confidence 55678899999999999772 57899999999999999976655544
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.67 E-value=41 Score=37.02 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=40.0
Q ss_pred EEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEe--CCeEEEEeCCCCcEEEEEec
Q 004015 66 VHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQ--AAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 66 VrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~--d~~I~IwD~~T~e~l~tl~t 120 (779)
+-.++. .|+++..+..+.....|.++ ++-|+.+- ....++||..+.+...++..
T Consensus 51 ~a~~~e-aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 51 AATLSE-AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred EEEEcc-CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 445554 59999999999999999995 56666653 34578999999887777743
No 368
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=73.54 E-value=19 Score=40.28 Aligned_cols=114 Identities=13% Similarity=0.227 Sum_probs=71.6
Q ss_pred CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC-CCC-C-------CCC-c--------cCCCC----
Q 004015 256 VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP-GIL-G-------TSS-A--------CDAGT---- 313 (779)
Q Consensus 256 ~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~-~~~-g-------~~s-~--------~~~~~---- 313 (779)
.....++...+|...|+++-|+-.-+.+++++.|.. -.|.-.. ++. | .+. . ++..+
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~--~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ--FAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccc--eEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence 344556667788899999999988888888888753 2343221 100 0 000 0 00000
Q ss_pred ------ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCce-eeccCCCCCC
Q 004015 314 ------SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDANFT 373 (779)
Q Consensus 314 ------s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~-~~~~H~~~~~ 373 (779)
.+..++++ .|++ ..|.+++|.+..+.|.++..|..+.+|||--..+.. .+++|.+...
T Consensus 180 lr~~~~~~~~i~~~-~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 180 LKLEQNGCQLITTF-NGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEEeecCCceEEEE-cCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 11223333 4443 348999999999999999999999999997655543 4467765443
No 369
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=72.71 E-value=33 Score=41.56 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=63.7
Q ss_pred CeEEEEECCCCcEEEEec-cCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEeCC-CCCCCCCCccCCCCceeEEEEe-e
Q 004015 248 GMVIVRDIVSKNVIAQFR-AHKSPISALCF--DPSGILLVTASVQGHNINIFKII-PGILGTSSACDAGTSYVHLYRL-Q 322 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~-aHt~~IsaLaF--SPdG~lLATaS~DGt~I~Vwdi~-~~~~g~~s~~~~~~s~~~l~~l-~ 322 (779)
-.+.|||.+.+.....-. ...++|.+|.| .|||+.+++-+...+ |.|+.-. .......+ +...+.++ -
T Consensus 51 ~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p------~w~~i~~i~i 123 (631)
T PF12234_consen 51 SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGP------SWAPIRKIDI 123 (631)
T ss_pred CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCc------ccceeEEEEe
Confidence 479999999876433222 45678999887 578998888888765 7777421 11011100 11122222 1
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+.+|++.|.+.+|-+||..++.++ .-++||+-
T Consensus 124 ~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 124 SSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 567778899999999998765543 45777764
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=72.66 E-value=32 Score=38.71 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=57.7
Q ss_pred CCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCC----------CEEEEEeCCCCCCCCCCccCCCC
Q 004015 245 DNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQG----------HNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DG----------t~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
+..-.++|+|+.+++.+.. |..- .-..+.|.+||+.|.-...+. +.|..|++-+. ..
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~----------~~ 214 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP----------QS 214 (414)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-----------GG
T ss_pred CceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC----------hH
Confidence 3445899999999987653 2321 122399999999876655432 23555565443 01
Q ss_pred ceeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeCCCe----EEEEecCC
Q 004015 314 SYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGT----SHLFAINP 358 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~DGT----VhIwdl~~ 358 (779)
.-..+|.-. .... ..++..|+|++||++.+.+++ +++.++..
T Consensus 215 ~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 215 EDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp G-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred hCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 113444332 2223 668999999999987666554 45555544
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=72.58 E-value=28 Score=43.28 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=60.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEc-------CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFD-------PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~-IsaLaFS-------PdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
+......|.-.|+..+++|..++.|... |..++=+ +..++|.. + + +.+.-||.+-. ++.-. .+
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl-s-~-n~lfriDpR~~--~~k~v----~~ 569 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL-S-D-NSLFRIDPRLS--GNKLV----DS 569 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEE-C-C-CceEEeccCCC--CCcee----ec
Confidence 3345677888999999999999988743 6655321 33334433 2 2 23566776542 11000 00
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
..+.| . +....+|+|=+.+| +||+||.+|-|++||
T Consensus 570 ~~k~Y--~---~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 570 QSKQY--S---SKNNFSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred ccccc--c---cCCCceEEEecCCc-eEEEEeCCCcEEeec
Confidence 01112 1 22348889888887 689999999999998
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=71.99 E-value=8.5 Score=40.74 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=63.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEec-cCCCCeEE-EEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISA-LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~Isa-LaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
.+..+..+|.|.+|...-......+. .-..+|.+ +.--.++.+..++..+|. |+.|.+.++ ++
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~--------------k~ 136 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPN--------------KV 136 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccC--------------ce
Confidence 44566788999998776221111111 11234444 333345668888999987 899999886 22
Q ss_pred EEEeecCCCc-ccEEEEEEcCCCCEEEEE--eCCCeEEEEecCCCCC
Q 004015 318 LYRLQRGLTN-AVIQDISFSDDSNWIMIS--SSRGTSHLFAINPLGG 361 (779)
Q Consensus 318 l~~l~rG~t~-a~I~sIaFSpDg~~LAtg--S~DGTVhIwdl~~~gg 361 (779)
+- .+|.+. ..+....-+..+++|+++ |.|.+++.|++.+...
T Consensus 137 ~g--~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 137 LG--YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred ee--eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 21 123222 345566666667777777 7777788888766543
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=71.97 E-value=35 Score=39.59 Aligned_cols=111 Identities=13% Similarity=0.101 Sum_probs=55.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-cCCC-CeEEEEEcCC--CCEEEEEeCC-CCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFR-AHKS-PISALCFDPS--GILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~-aHt~-~IsaLaFSPd--G~lLATaS~D-Gt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
..+.....+.+||+.+.+.++++. +-.+ -...|+|-.+ -.+=.++..- ++++++|....+ .| ..+
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~W---------~a~ 285 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG-EW---------AAE 285 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT-EE---------EEE
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC-Ce---------eee
Confidence 334455699999999999999887 3233 3557888554 4444444333 333333332222 11 112
Q ss_pred EEEEeec---------------CCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCc
Q 004015 317 HLYRLQR---------------GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGS 362 (779)
Q Consensus 317 ~l~~l~r---------------G~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~ 362 (779)
.+..+.- +..++-|++|..|.|.+||-.+. .+|.++.|||+....+
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 2222210 11123489999999999997765 6999999999886544
No 374
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.92 E-value=8.4 Score=28.55 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEE
Q 004015 329 VIQDISFSDDSNWIMISSSR---GTSHLF 354 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~D---GTVhIw 354 (779)
.-...+|||||++|+-++.. |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 35689999999999877765 566666
No 375
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.84 E-value=11 Score=27.85 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=20.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEE
Q 004015 266 AHKSPISALCFDPSGILLVTASVQG--HNINIF 296 (779)
Q Consensus 266 aHt~~IsaLaFSPdG~lLATaS~DG--t~I~Vw 296 (779)
.........+|||||+.|+-++... ....||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445677889999999888766653 225555
No 376
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.42 E-value=2.7e+02 Score=34.81 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=42.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE---------EEE-------------------EcCcEEEEEeCCeEEEEeCCCCcEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY---------SVR-------------------CSSRVVAICQAAQVHCFDAATLEIE 115 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~---------sV~-------------------~s~rlLaVs~d~~I~IwD~~T~e~l 115 (779)
+.|.=.|.+||+.+..+..+..+. .+. +.+++++.+.|++++..|+.|++.+
T Consensus 204 ~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 204 NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEE
Confidence 668888999999999987644321 122 2246667788999999999999988
Q ss_pred EEEec
Q 004015 116 YAILT 120 (779)
Q Consensus 116 ~tl~t 120 (779)
..+..
T Consensus 284 W~fg~ 288 (764)
T TIGR03074 284 EDFGN 288 (764)
T ss_pred EEecC
Confidence 87643
No 377
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=70.57 E-value=1.7e+02 Score=36.17 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=48.2
Q ss_pred CCeEEEEEc--CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC---C---
Q 004015 269 SPISALCFD--PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS---N--- 340 (779)
Q Consensus 269 ~~IsaLaFS--PdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg---~--- 340 (779)
.++..|++. ...++||.++.. +.|.||-..... .. ..+.... ...+.|-+|+|-++. .
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs-~~VTVFaf~l~~-~r---------~~~~~s~---~~~hNIP~VSFl~~~~d~~G~v 229 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNS-QEVTVFAFALVD-ER---------FYHVPSH---QHSHNIPNVSFLDDDLDPNGHV 229 (717)
T ss_pred CceeEEEEEecCcceEEEEecCC-ceEEEEEEeccc-cc---------ccccccc---ccccCCCeeEeecCCCCCccce
Confidence 377889997 677777766654 568998665420 00 0010011 123458999997654 2
Q ss_pred EEEEEeCCCeEEEEec
Q 004015 341 WIMISSSRGTSHLFAI 356 (779)
Q Consensus 341 ~LAtgS~DGTVhIwdl 356 (779)
+|++++-.|.+-+|++
T Consensus 230 ~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 230 KVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccCcEEEEEE
Confidence 8999999999999988
No 378
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.00 E-value=5.7 Score=48.82 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=64.8
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCC
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 338 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD 338 (779)
+....|+.|+..-+|++|+-+-..|+.|+..|. |++|++.+|.- ..-++. +.+.|+-|.=|-|
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Ge-ik~~nv~sG~~------------e~s~nc----H~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGE-IKIFNVSSGSM------------EESVNC----HQSAVTLVEPSVD 1154 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccce-EEEEEccCccc------------cccccc----cccccccccccCC
Confidence 566788999999999999999999999999998 89999987610 111111 2234777777888
Q ss_pred CCEEEEEeCCC--eEEEEecCCCCCc
Q 004015 339 SNWIMISSSRG--TSHLFAINPLGGS 362 (779)
Q Consensus 339 g~~LAtgS~DG--TVhIwdl~~~gg~ 362 (779)
|..+.+++.-. -..+|++...++.
T Consensus 1155 gs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1155 GSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred cceeeeeccccCchHHHhccccccCc
Confidence 88877765543 4788999775443
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=69.45 E-value=1.8e+02 Score=31.78 Aligned_cols=57 Identities=7% Similarity=0.128 Sum_probs=42.9
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEE--EEEE-cCcEEEEEe-CCeEEEEeCCCCcEEEEEe
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIY--SVRC-SSRVVAICQ-AAQVHCFDAATLEIEYAIL 119 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~--sV~~-s~rlLaVs~-d~~I~IwD~~T~e~l~tl~ 119 (779)
...|+.+|+.||+.+....++.... .|.. ++++...+. ++...+||..|++.+.++.
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 4789999999999999999876654 3333 466666664 5688999999999988884
No 380
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=68.00 E-value=86 Score=35.46 Aligned_cols=94 Identities=15% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE-----
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR----- 320 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~----- 320 (779)
..+.|.+.|-.+.+.+.....=..| ..++|+|+|+.+..+..+...|.++|.... .+..
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~---------------~v~~~~~~~ 201 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN---------------SVVRGSVGS 201 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc---------------ceecccccc
Confidence 4678899999999888886644456 889999999966666644445899996543 1111
Q ss_pred -eecCCCcccEEEEEEcCCCCEEEEEeCC---CeEEEEecCC
Q 004015 321 -LQRGLTNAVIQDISFSDDSNWIMISSSR---GTSHLFAINP 358 (779)
Q Consensus 321 -l~rG~t~a~I~sIaFSpDg~~LAtgS~D---GTVhIwdl~~ 358 (779)
...+.. -..++++|||+++.+.-.. +++.+.+...
T Consensus 202 ~~~~~~~---P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 202 LVGVGTG---PAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred ccccCCC---CceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 111211 3579999999976665544 3666666654
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.70 E-value=53 Score=38.87 Aligned_cols=57 Identities=7% Similarity=0.083 Sum_probs=42.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
+++.++.+|.|++||-........|++...+|..|..+.||++|+.... +.+.+-++
T Consensus 443 ~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t 499 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK--TYLLLIDT 499 (644)
T ss_pred eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc--cEEEEEEE
Confidence 4556778899999998555555668899999999999999996654332 23555554
No 382
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.31 E-value=29 Score=44.35 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..|.++.|--++.-++.+..+|. |.+-|..+. .... -|.....|.+++||||.+++|..+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~-iilvd~et~------------~~ei-----vg~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGD-IILVDPETL------------ELEI-----VGNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred cceEEEEEecccceEEEEecCCc-EEEEccccc------------ceee-----eeeccCceEEEeecCCCcEEEEEeCC
Confidence 57889999999998888889998 455565543 1111 23333448999999999999999999
Q ss_pred CeEEEE
Q 004015 349 GTSHLF 354 (779)
Q Consensus 349 GTVhIw 354 (779)
+|+.+-
T Consensus 131 ~tll~m 136 (1265)
T KOG1920|consen 131 QTLLFM 136 (1265)
T ss_pred cEEEEE
Confidence 998773
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=64.85 E-value=40 Score=37.26 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=39.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE
Q 004015 266 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 266 aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg 345 (779)
.-.+.|..+..++||+++|.+ ..|+.+.-||--. +....+ .|. +..+|+.|.|+||+...+++
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs-~~G~~~~s~~~G~-------------~~w~~~--~r~-~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVS-SRGNFYSSWDPGQ-------------TTWQPH--NRN-SSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp S----EEEEEE-TTS-EEEEE-TTSSEEEEE-TT--------------SS-EEE--E---SSS-EEEEEE-TTS-EEEEE
T ss_pred CCcceeEeEEECCCCcEEEEE-CcccEEEEecCCC-------------ccceEE--ccC-ccceehhceecCCCCEEEEe
Confidence 334789999999999988876 4577666676221 112322 233 34569999999998877655
Q ss_pred eCCCeEEEEe
Q 004015 346 SSRGTSHLFA 355 (779)
Q Consensus 346 S~DGTVhIwd 355 (779)
..|-++.=+
T Consensus 205 -~Gg~~~~s~ 213 (302)
T PF14870_consen 205 -RGGQIQFSD 213 (302)
T ss_dssp -TTTEEEEEE
T ss_pred -CCcEEEEcc
Confidence 666666544
No 384
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.23 E-value=65 Score=38.14 Aligned_cols=89 Identities=11% Similarity=0.238 Sum_probs=53.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCcc-CCCCceeEE-E----EeecCCCcccEEEEEEcCCC---C
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC-DAGTSYVHL-Y----RLQRGLTNAVIQDISFSDDS---N 340 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~-~~~~s~~~l-~----~l~rG~t~a~I~sIaFSpDg---~ 340 (779)
.|..+..|+.|..+|-++.+|- .|-.+... .|.-+.. +....+.+. . .+....+.-.+..++|.|++ .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~r-wG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKR-WGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecCCCceEEEecCCee--EEEEchhh-cCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 6778899999999999999984 44444221 1111111 100011110 0 01111122237789999987 6
Q ss_pred EEEEEeCCCeEEEEecCCCCC
Q 004015 341 WIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 341 ~LAtgS~DGTVhIwdl~~~gg 361 (779)
.|.+-++|.+++||+++....
T Consensus 182 hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eEEEEecCcEEEEEecCCcch
Confidence 788999999999999987543
No 385
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=63.31 E-value=3.2e+02 Score=32.54 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=41.6
Q ss_pred CEEEEEECCCCcEEEEEeCCCC--EE----------EEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP--IY----------SVRCS-SRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~--V~----------sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.=+|++||+.+.+.....+ +. .+.+. +++++.+.++.++++|+.|++.+.....
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4588889999999998875321 21 12333 4566667899999999999999887653
No 386
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=61.82 E-value=19 Score=41.88 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=32.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCC
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAA 110 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~ 110 (779)
..|.|||..+++.+..+.... |..|-|+ +.+||...+..|+|++-.
T Consensus 126 ~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 126 DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 459999999999999999864 9999997 679999888899987754
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=59.31 E-value=88 Score=33.34 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=48.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEe-CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC-
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFK-IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS- 347 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwd-i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~- 347 (779)
.++.-+|+++|.+.+....+.. .+++. ...+ . .. ...+........|.++.+||||..+|.-..
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g---~---------~~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~ 132 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASG---T---------GE-PVEVDWPGLRGRITALRVSPDGTRVAVVVED 132 (253)
T ss_pred ccccccccCCCCEEEEEcCCCc-eEEEEecCCC---c---------ce-eEEecccccCCceEEEEECCCCcEEEEEEec
Confidence 7888899999998887776554 56664 2221 0 11 111211111116999999999999998873
Q ss_pred --CCeEEEEecCCC
Q 004015 348 --RGTSHLFAINPL 359 (779)
Q Consensus 348 --DGTVhIwdl~~~ 359 (779)
++.+.|=.|...
T Consensus 133 ~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 133 GGGGRVYVAGVVRD 146 (253)
T ss_pred CCCCeEEEEEEEeC
Confidence 577777766543
No 388
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=37 Score=38.78 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=47.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCCEEEEEeCCCC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGIL-LVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~l-LATaS~DGt~I~Vwdi~~~ 301 (779)
..+.-+.+|+|.|+.+..++..+.+| .+|.+.+|+-|... |-.|...|- |.|||++..
T Consensus 210 ~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~-VlvyD~R~~ 268 (463)
T KOG1645|consen 210 GLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM-VLVYDMRQP 268 (463)
T ss_pred eeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce-EEEEEccCC
Confidence 44566789999999999999999999 78999999998774 555566665 999999863
No 389
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.83 E-value=25 Score=42.48 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=56.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 268 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 268 t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
..-|.--+|+-.+++|+.|+..|- +.+|.-..+ ...+++.. | ....+..++.|++..++|+|+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~-------------~~~~~~~~-~-~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTG-------------EMRKLKNE-G-ATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred cceEEEEEeecCCceEEEecccce-EEEEecCch-------------hhhccccc-C-ccceEEEEEecchhHhhhhhcC
Confidence 345666788999999999999986 788876543 12223321 2 2233667888999999999999
Q ss_pred CCeEEEEecCCC
Q 004015 348 RGTSHLFAINPL 359 (779)
Q Consensus 348 DGTVhIwdl~~~ 359 (779)
.|.|-||.++..
T Consensus 97 ~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 97 SGRVSVFQLNKE 108 (726)
T ss_pred CceEEeehhhcc
Confidence 999999999883
No 390
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.73 E-value=21 Score=26.70 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCEE-EEEE-cCcEEEEEeCCeEEEEeCCC
Q 004015 75 SYVHMLKFRSPIY-SVRC-SSRVVAICQAAQVHCFDAAT 111 (779)
Q Consensus 75 e~V~tLkf~s~V~-sV~~-s~rlLaVs~d~~I~IwD~~T 111 (779)
+.+.+.+...++. ++.. .+++++.+.+++|+++|+.|
T Consensus 2 ~~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EEEEEE-SS---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred ceeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 3444444444432 3344 45566668899999999875
No 391
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=53.86 E-value=1.2e+02 Score=37.05 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=52.8
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEE--cCCCC
Q 004015 263 QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF--SDDSN 340 (779)
Q Consensus 263 ~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaF--SpDg~ 340 (779)
+|..-...++.+.-|.-++ +|..+.+++.+.|||...+ ...|+-.- .....|.++.| .|||+
T Consensus 24 ~~~T~i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~--------------~lE~~~~f-~~~~~I~dLDWtst~d~q 87 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSG--------------VLEYEESF-SEDDPIRDLDWTSTPDGQ 87 (631)
T ss_pred EEecCCCCcceEeecccCc-EEEEECCCCEEEEEEcCCc--------------EEEEeeee-cCCCceeeceeeecCCCC
Confidence 3333334556666666555 5555777888999999865 22222111 11235899988 67999
Q ss_pred EEEEEeCCCeEEEEecCC
Q 004015 341 WIMISSSRGTSHLFAINP 358 (779)
Q Consensus 341 ~LAtgS~DGTVhIwdl~~ 358 (779)
.+.+.+-...|.||.-..
T Consensus 88 siLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 88 SILAVGFPHHVLLYTQLR 105 (631)
T ss_pred EEEEEEcCcEEEEEEccc
Confidence 999999999999986543
No 392
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.74 E-value=23 Score=37.11 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=30.4
Q ss_pred EEEeCCCCEEEEEEcCc-EEEEEeCCeEEEEeCCCCcEE
Q 004015 78 HMLKFRSPIYSVRCSSR-VVAICQAAQVHCFDAATLEIE 115 (779)
Q Consensus 78 ~tLkf~s~V~sV~~s~r-lLaVs~d~~I~IwD~~T~e~l 115 (779)
-.|...++|.-+.+++. +++++.++.+++||+.+++++
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 45667888888999755 456789999999999998754
No 393
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=53.20 E-value=1e+02 Score=30.81 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=25.6
Q ss_pred cEEEEEEcCCC------CEEEEEeCCCeEEEEecCCC
Q 004015 329 VIQDISFSDDS------NWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 329 ~I~sIaFSpDg------~~LAtgS~DGTVhIwdl~~~ 359 (779)
.|..++|||-| -.||+-+.+|.+.||.-...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 58899999943 36999999999999987643
No 394
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=52.52 E-value=1.8e+02 Score=31.22 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=47.5
Q ss_pred EeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCE
Q 004015 263 QFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 341 (779)
Q Consensus 263 ~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~ 341 (779)
.+.+-...|+.|+|+|+.. ++|..+..+. |...+.. + .+...+.+ .|. ...-.|++.-+++|
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~-i~els~~-G------------~vlr~i~l-~g~--~D~EgI~y~g~~~~ 78 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGE-IYELSLD-G------------KVLRRIPL-DGF--GDYEGITYLGNGRY 78 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTE-EEEEETT---------------EEEEEE--SS---SSEEEEEE-STTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCE-EEEEcCC-C------------CEEEEEeC-CCC--CCceeEEEECCCEE
Confidence 4445556799999999755 5555555554 5455542 2 22333333 232 34678999999988
Q ss_pred EEEEeCCCeEEEEecCCCCCc
Q 004015 342 IMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 342 LAtgS~DGTVhIwdl~~~gg~ 362 (779)
+++.-.++++.++++...+..
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEETTTTEEEEEEE----TT
T ss_pred EEEEcCCCcEEEEEEeccccc
Confidence 877767999999999665443
No 395
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=52.46 E-value=28 Score=25.99 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=23.4
Q ss_pred cEEEEEeCCeEEEEeCCCCcEEEEEecC
Q 004015 94 RVVAICQAAQVHCFDAATLEIEYAILTN 121 (779)
Q Consensus 94 rlLaVs~d~~I~IwD~~T~e~l~tl~t~ 121 (779)
++++.+.++.|+.+|+.|++.+.....-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3455578899999999999999999764
No 396
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=52.39 E-value=86 Score=23.00 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 278 PSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 278 PdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
|+|+.|..+......|.++|..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 688888777766667999998654
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=50.87 E-value=6.6e+02 Score=32.33 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=66.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
-.|++|+..+++.+..=..|..++.+|...-.|..+|.|+.-+. |.+-..... --.++.+.|-..+
T Consensus 848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-------------eg~f~evArD~~p 913 (1096)
T KOG1897|consen 848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-------------EGNFEEVARDYNP 913 (1096)
T ss_pred cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-------------CCceEEeehhhCc
Confidence 47999999998877777789999999999999999999998765 666543322 0124455565555
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
..+..+.+=.|..|+ .+..+|-+.+-...
T Consensus 914 ~Wmtaveil~~d~yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 914 NWMTAVEILDDDTYL-GAENSGNLFTVRKD 942 (1096)
T ss_pred cceeeEEEecCceEE-eecccccEEEEEec
Confidence 556777776555554 56667777766554
No 398
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=50.59 E-value=6.3 Score=46.95 Aligned_cols=98 Identities=14% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCeEEEEECCCC--c--EEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 246 NVGMVIVRDIVSK--N--VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 246 ~dG~V~VwDl~s~--~--~v~~f~a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.+-.+.|||+.++ - .-..|.+ -....+.+||..+-++|.+|..... +++||++..+.. +..+.+
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~-~~ifdlRqs~~~----------~~svnT 195 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS-VHIFDLRQSLDS----------VSSVNT 195 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch-hhhhhhhhhhhh----------hhhhhh
Confidence 4567899999876 2 2233444 3345668999999999999888754 899999853110 011111
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEe-cCCCCCc
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFA-INPLGGS 362 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwd-l~~~gg~ 362 (779)
.-++.+..+| ...|+++.+ ||-|.+|| ......+
T Consensus 196 -------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp 231 (783)
T KOG1008|consen 196 -------KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP 231 (783)
T ss_pred -------hhcccceecCCCCCceeccc-cCceeeccchhhhccH
Confidence 1255666777 777887766 99999999 4443333
No 399
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=47.71 E-value=1.2e+02 Score=31.96 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=44.9
Q ss_pred CCEEEEEECCCC-----cEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCCcEE
Q 004015 63 PTVVHFYSLRSQ-----SYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIE 115 (779)
Q Consensus 63 ~~tVrIWDL~Tg-----e~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~e~l 115 (779)
.++|.||..... ..++.+..+..+.+|.|.++.|+++..+...+.|+.++...
T Consensus 113 kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 113 KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPS 170 (275)
T ss_pred CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCce
Confidence 467888877653 57888889999999999999999999999999999987653
No 400
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=46.56 E-value=1.6e+02 Score=33.86 Aligned_cols=26 Identities=27% Similarity=0.673 Sum_probs=17.3
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEecC
Q 004015 332 DISFSDDSNWIMISS-SRGTSHLFAIN 357 (779)
Q Consensus 332 sIaFSpDg~~LAtgS-~DGTVhIwdl~ 357 (779)
-..||||++||+-.| ..|..+||-+.
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCccCCCCCEEEEECCCCCCccEEEEe
Confidence 579999999977554 57888888764
No 401
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=46.28 E-value=2.3e+02 Score=32.49 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
++|..|++||+|++||--..+|+ +.|....
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~-l~v~ssD 246 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGN-LWVVSSD 246 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCC-EEEEECc
Confidence 68999999999999999988998 6666543
No 402
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=46.16 E-value=42 Score=39.89 Aligned_cols=70 Identities=29% Similarity=0.393 Sum_probs=38.3
Q ss_pred EEEEcCCCCEEEEEeCCCCEEE---------EEeCCCCCCCC-CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEE
Q 004015 273 ALCFDPSGILLVTASVQGHNIN---------IFKIIPGILGT-SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI 342 (779)
Q Consensus 273 aLaFSPdG~lLATaS~DGt~I~---------Vwdi~~~~~g~-~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~L 342 (779)
.|+|+|+|.|++.-+..+.... +|++... .|. ....+ .....+.++..+-..+.+..++|+||++.|
T Consensus 440 NL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~-~G~~~~~~~--~~~g~~~rf~~~P~gaE~tG~~fspDg~tl 516 (524)
T PF05787_consen 440 NLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARN-DGNNVWAYD--PDTGELKRFLVGPNGAEITGPCFSPDGRTL 516 (524)
T ss_pred ceEECCCCCEEEEeCCCCCCcccccccccCceeeeeec-ccceeeecc--ccccceeeeccCCCCcccccceECCCCCEE
Confidence 3999999998877555543222 1222100 000 00000 011223444455556779999999999998
Q ss_pred EEE
Q 004015 343 MIS 345 (779)
Q Consensus 343 Atg 345 (779)
.+.
T Consensus 517 Fvn 519 (524)
T PF05787_consen 517 FVN 519 (524)
T ss_pred EEE
Confidence 764
No 403
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.90 E-value=8.6 Score=40.11 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=18.2
Q ss_pred ccEEEEccCccEEE--EeeeeccC
Q 004015 468 NHLLVFSPSGCMIQ--YALRISTG 489 (779)
Q Consensus 468 ~~l~V~~p~G~liq--y~L~~~~~ 489 (779)
.-|-||+|+|||+| |.++....
T Consensus 6 raltvFSPDGhL~QVEYAqEAvrk 29 (249)
T KOG0183|consen 6 RALTVFSPDGHLFQVEYAQEAVRK 29 (249)
T ss_pred cceEEECCCCCEEeeHhHHHHHhc
Confidence 35889999999999 98887643
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.35 E-value=1.3e+02 Score=31.49 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred EcCCCCEEEEEeCCCCEEEEEeCCCCCC--CCCCccCCCCceeEEEEe----ecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 276 FDPSGILLVTASVQGHNINIFKIIPGIL--GTSSACDAGTSYVHLYRL----QRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 276 FSPdG~lLATaS~DGt~I~Vwdi~~~~~--g~~s~~~~~~s~~~l~~l----~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
+..+|.+|+.-..+|. ++|||+..... ...+ ...+... .+ .....|..+.++.+|.-|++-+ +|
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~S-------i~pll~~~~~~~~-~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVS-------IAPLLNSSPVSDK-SSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCcc-------HHHHhcccccccC-CCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 4567888888889997 89999987511 1101 1111110 00 1223488999998888776554 57
Q ss_pred eEEEEecCCC
Q 004015 350 TSHLFAINPL 359 (779)
Q Consensus 350 TVhIwdl~~~ 359 (779)
..++|+..-.
T Consensus 88 ~~y~y~~~L~ 97 (219)
T PF07569_consen 88 DSYSYSPDLG 97 (219)
T ss_pred CEEEeccccc
Confidence 8888887653
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=44.17 E-value=1.2e+02 Score=33.02 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=43.4
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEec
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t 120 (779)
.++..+||..+-+.+.++.++..=..++..++.|.+ -...+|+.+|..+++.+.++.-
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred CCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 478999999999999999999888899887555544 5668999999999998888753
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=44.15 E-value=7.5e+02 Score=31.08 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=36.8
Q ss_pred CCCeEEEEECCCCcEEEEecc-CCC--------CeEEEEEcC-CCC---EEEEEeCCCCEEEEEeCCCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRA-HKS--------PISALCFDP-SGI---LLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~a-Ht~--------~IsaLaFSP-dG~---lLATaS~DGt~I~Vwdi~~~ 301 (779)
..+.|.-.|+++++.+.+|+. |.+ +-.-+.+.- +|+ .|+.++.+|. +.++|-.++
T Consensus 412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG 479 (764)
T TIGR03074 412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTG 479 (764)
T ss_pred ccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCC
Confidence 456788899999999998885 321 111223333 674 7888888886 788887765
No 407
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=43.90 E-value=6.8e+02 Score=31.27 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=46.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCC--CCEEEEEe
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD--SNWIMISS 346 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD--g~~LAtgS 346 (779)
+....|.|.++-..|+.++.. .+.++|+.+.. ...+ +-...+...|.++.=+|+ +..|+..+
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~--~l~~~d~~~~~------------~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiLTs 267 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRS--KLMLIDFESNW------------QTEY--LVTAKTWSWILDVKRSPDNPSHVFILTS 267 (765)
T ss_pred CcceeeEecCCCCEEEEEcCC--ceEEEECCCCC------------ccch--hccCCChhheeeEEecCCccceEEEEec
Confidence 344578999987777777765 38999998751 1111 222223345999999998 44444433
Q ss_pred CCCeEEEEecCCC
Q 004015 347 SRGTSHLFAINPL 359 (779)
Q Consensus 347 ~DGTVhIwdl~~~ 359 (779)
..|..+++.+.
T Consensus 268 --~eiiw~~~~~~ 278 (765)
T PF10214_consen 268 --KEIIWLDVKSS 278 (765)
T ss_pred --CeEEEEEccCC
Confidence 56777788764
No 408
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=43.06 E-value=56 Score=22.90 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=21.0
Q ss_pred CcEEEEEeCCeEEEEeCCCCcEEEEE
Q 004015 93 SRVVAICQAAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 93 ~rlLaVs~d~~I~IwD~~T~e~l~tl 118 (779)
+.+++.+.++.++.+|+.+++.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 45666678899999999999987764
No 409
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=41.84 E-value=18 Score=44.86 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=37.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE-----------EcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC-----------FDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLa-----------FSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
..+..+|.|++..+..-. ...|+.|...+..++ .||||+.+|+++.||. ++.|.+.
T Consensus 199 c~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy 265 (1283)
T KOG1916|consen 199 CYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY 265 (1283)
T ss_pred eeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence 344566777774443321 144566776555443 6999999999999997 7888765
No 410
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.58 E-value=1.8e+02 Score=34.64 Aligned_cols=102 Identities=15% Similarity=0.272 Sum_probs=60.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC--EEEEE-----eCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI--LLVTA-----SVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~--lLATa-----S~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.++.....++--|+..++++...+-|.. |+-+.|.|+++ .|.+. =.+ + .||.+.+-..+.-- -.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~-n--~vfriDpRv~~~~k-----l~ 420 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSD-N--SVFRIDPRVQGKNK-----LA 420 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecC-C--ceEEecccccCcce-----ee
Confidence 3444445677789999999999888876 88888888755 23211 112 2 23444332111100 00
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+..-..+.++ ...+|++=.-+| +||+||.+|-|++||-
T Consensus 421 ~~q~kqy~~k---~nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 421 VVQSKQYSTK---NNFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eeeccccccc---cccceeeecCCc-eEEEeecCCcEEeehh
Confidence 0111112222 236777777666 7899999999999987
No 411
>PRK10115 protease 2; Provisional
Probab=40.84 E-value=1.3e+02 Score=36.88 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=44.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCC---EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEE
Q 004015 269 SPISALCFDPSGILLVTASV-QGH---NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI 344 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~-DGt---~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAt 344 (779)
-.+..+.+||||++||-+-+ +|. .|+|-|+.++ ..+.. .....+ ..++|++|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--------------~~l~~---~i~~~~-~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--------------NWYPE---LLDNVE-PSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--------------CCCCc---cccCcc-eEEEEeeCCCEEEE
Confidence 45778999999998886544 332 3666677654 10101 111112 46999999998887
Q ss_pred EeCCC------eEEEEecCCC
Q 004015 345 SSSRG------TSHLFAINPL 359 (779)
Q Consensus 345 gS~DG------TVhIwdl~~~ 359 (779)
+..+. .|..+++.+.
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEecCCCCCCCEEEEEECCCC
Confidence 76642 3555555544
No 412
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.80 E-value=1.3e+02 Score=33.36 Aligned_cols=78 Identities=19% Similarity=0.387 Sum_probs=47.5
Q ss_pred CCCe-EEEEECCCCcEEE--------EeccCCCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEeCCCCCCCCCCccCC
Q 004015 246 NVGM-VIVRDIVSKNVIA--------QFRAHKSPISALCFDPSGILLVTASVQ-----GHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 246 ~dG~-V~VwDl~s~~~v~--------~f~aHt~~IsaLaFSPdG~lLATaS~D-----Gt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
..|+ ..|+|....+.+. +|-+| =.|||||.+|-..-.| | .|-|||...+
T Consensus 88 rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rG-ViGvYd~r~~---------- 150 (366)
T COG3490 88 RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRG-VIGVYDAREG---------- 150 (366)
T ss_pred cCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCc-eEEEEecccc----------
Confidence 3443 3568877765443 44555 3699999988643222 3 4889998754
Q ss_pred CCceeEEEEee-cCCCcccEEEEEEcCCCCEEEEEe
Q 004015 312 GTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 312 ~~s~~~l~~l~-rG~t~a~I~sIaFSpDg~~LAtgS 346 (779)
+.++-++. .|.- --++.|.+||+.++++.
T Consensus 151 ---fqrvgE~~t~GiG---pHev~lm~DGrtlvvan 180 (366)
T COG3490 151 ---FQRVGEFSTHGIG---PHEVTLMADGRTLVVAN 180 (366)
T ss_pred ---cceecccccCCcC---cceeEEecCCcEEEEeC
Confidence 12222221 1222 24789999999998875
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=38.83 E-value=2.2e+02 Score=31.52 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=38.5
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEE
Q 004015 252 VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 331 (779)
Q Consensus 252 VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~ 331 (779)
-||--...-..+-+.-...|.+|.|+|+|.+.+.+ ..|. |+.=+.... . .....-..........|.
T Consensus 170 s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~--~---------~~w~~~~~~~~~~~~~~l 236 (302)
T PF14870_consen 170 SWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDD--G---------ETWSEPIIPIKTNGYGIL 236 (302)
T ss_dssp EE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTE--E---------EEE---B-TTSS--S-EE
T ss_pred EecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCC--c---------cccccccCCcccCceeeE
Confidence 35544322333444456789999999999987765 4443 444341111 0 000000000101112289
Q ss_pred EEEEcCCCCEEEEEeCC
Q 004015 332 DISFSDDSNWIMISSSR 348 (779)
Q Consensus 332 sIaFSpDg~~LAtgS~D 348 (779)
+++|.+++...|+|+..
T Consensus 237 d~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEESSSS-EEEEESTT
T ss_pred EEEecCCCCEEEEeCCc
Confidence 99999999888866544
No 414
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=38.81 E-value=4.6e+02 Score=28.18 Aligned_cols=108 Identities=13% Similarity=0.278 Sum_probs=63.0
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aH-t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++..+.++.|..+|.. ++++..+.-. -+..-.|++--+|.++++.-.+++ +.++++.... ... ......
T Consensus 37 faV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~-L~~~~~~~~~-~~~-------~~~~~~ 106 (248)
T PF06977_consen 37 FAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR-LYIFTIDDDT-TSL-------DRADVQ 106 (248)
T ss_dssp EEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE-EEEEEE-----TT---------EEEEE
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc-EEEEEEeccc-ccc-------chhhce
Confidence 3445677888888874 6788777633 356778999888877776544654 7888885420 000 111122
Q ss_pred EeecCCC---cccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 320 RLQRGLT---NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 320 ~l~rG~t---~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.+.-+.. +.-+-.|||.|.++.|.++-.+....||.+..
T Consensus 107 ~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 107 KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 2222322 22378999999988888888887788887754
No 415
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=38.29 E-value=1.4e+02 Score=26.98 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=33.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
|.|.-||-..-+.++ .+ -..-+.|.+||++++|..++.-++.|+||...
T Consensus 36 ~~Vvyyd~~~~~~va--~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVA--SG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeEEee--cc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 556677765332221 11 13446699999999999888877789999764
No 416
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=38.28 E-value=1.4e+02 Score=37.14 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=51.5
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC------cccEEEEEEcCCCCE
Q 004015 269 SPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT------NAVIQDISFSDDSNW 341 (779)
Q Consensus 269 ~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t------~a~I~sIaFSpDg~~ 341 (779)
.+...++|+| +-+.||..+..|+ ..||++......... ...+.....|.- ......|+|.++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~~~-------~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~ 217 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRKSS-------NLRLSRNISGSIIFDPEELSNWKRILWVSDSNR 217 (765)
T ss_pred CccceEEeccCccceEEEEeccCc-EEEEEeccccccCCc-------ceeeccCCCccccCCCcccCcceeeEecCCCCE
Confidence 3788899999 5668999999998 899999221110000 001110011210 112457999999888
Q ss_pred EEEEeCCCeEEEEecCCCC
Q 004015 342 IMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 342 LAtgS~DGTVhIwdl~~~g 360 (779)
|++.+ +..+.++|+....
T Consensus 218 lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 218 LLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred EEEEc-CCceEEEECCCCC
Confidence 87765 5567888987653
No 417
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=37.66 E-value=12 Score=44.87 Aligned_cols=102 Identities=10% Similarity=0.161 Sum_probs=66.5
Q ss_pred cCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcC-CCCEEEEEeCCC----CEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 244 ADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDP-SGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSP-dG~lLATaS~DG----t~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
+..+|.|.+-.++...- -....+|..+.++++|++ |-..||.| -|. ..+.|||+.....-+ .
T Consensus 76 G~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhrnds~~~Iwdi~s~ltvP----------k 144 (783)
T KOG1008|consen 76 GSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAG-LDKHRNDSSLKIWDINSLLTVP----------K 144 (783)
T ss_pred ccccCceEEeecCCcccccceecccccccccccccccccHHHHHhh-hhhhcccCCccceecccccCCC----------c
Confidence 34558887776664322 123457888999999999 55677765 332 358999998752111 0
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.-..|..+ +-....++||-.|-+.|.+|...+.+|+||+.
T Consensus 145 e~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 145 ESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred cccccccc-cccCccccccccCcchhhcccccchhhhhhhh
Confidence 00111111 11124589999999999999999999999997
No 418
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=36.85 E-value=3.7e+02 Score=29.50 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=40.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCCEEEEEeCCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-----QGHNINIFKIIPG 301 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-----DGt~I~Vwdi~~~ 301 (779)
...|-+||..+.+-..--.+-.+.|++|.|.-+.++|+.|+. ....+..||+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 346889999887655444455689999999988888888762 2345778887764
No 419
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=36.73 E-value=1.5e+02 Score=35.05 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=27.4
Q ss_pred EEEEEEcC----CCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 330 IQDISFSD----DSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 330 I~sIaFSp----Dg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
+.+++++. +..+|++-+.|++++||++.+.....+
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 55667766 888999999999999999998766433
No 420
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=36.56 E-value=1.9e+02 Score=31.53 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=40.8
Q ss_pred CCEEEEEECCCCcEEEEEeCC-------CCEEEEEEcC-------cEEEEEe--CCeEEEEeCCCCcEEEEEec
Q 004015 63 PTVVHFYSLRSQSYVHMLKFR-------SPIYSVRCSS-------RVVAICQ--AAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~-------s~V~sV~~s~-------rlLaVs~--d~~I~IwD~~T~e~l~tl~t 120 (779)
+-+|-+|||+|++.++++.|+ +-..++++.. .++-++. ...|.|||+.+++--+.+..
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 356889999999999999985 3466677742 3444544 35899999999987666644
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=35.47 E-value=68 Score=37.29 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCEEEEEECCCCcEEEEEeCC---CCEEEEEEc------CcEEEEEeCCeEEEEeC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFR---SPIYSVRCS------SRVVAICQAAQVHCFDA 109 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~---s~V~sV~~s------~rlLaVs~d~~I~IwD~ 109 (779)
-+++.|||+++++.+++|... .-+..|+|- --++.+++..+|..|=-
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k 276 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK 276 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence 478999999999999999996 357889992 12566678778866643
No 422
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=35.38 E-value=1.2e+02 Score=35.64 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=19.9
Q ss_pred CEEEEEE--cCcEEEEEe-CCeEEEEeCCCCc
Q 004015 85 PIYSVRC--SSRVVAICQ-AAQVHCFDAATLE 113 (779)
Q Consensus 85 ~V~sV~~--s~rlLaVs~-d~~I~IwD~~T~e 113 (779)
.-.+|.| ++++|++-- .++|++++..+..
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~ 62 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGE 62 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence 4456677 366776665 5899999876654
No 423
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.63 E-value=3.1e+02 Score=34.43 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=60.0
Q ss_pred eEEEEECCCC------cEE---EEe--c--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 249 MVIVRDIVSK------NVI---AQF--R--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 249 ~V~VwDl~s~------~~v---~~f--~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
.|+|||+..- .++ ..+ + .-..|+++|+.+.+=+.+|.|=.+|. |..+.-... ... ++
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~-V~~~~GDi~-RDr-------gs- 162 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGL-VICYKGDIL-RDR-------GS- 162 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcE-EEEEcCcch-hcc-------cc-
Confidence 7899998642 233 111 1 23568999999999999999999997 555532211 000 01
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+..|. ++|. ..|+.++|-.|++-+.-...-..|++|.+.
T Consensus 163 r~~~~-~~~~--~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 163 RQDYS-HRGK--EPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred ceeee-ccCC--CCceeeEEecCCceeEEEEecceeEEEEec
Confidence 22233 2442 359999999999872222223468999998
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=34.57 E-value=2e+02 Score=30.37 Aligned_cols=58 Identities=12% Similarity=0.373 Sum_probs=37.3
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 274 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 274 LaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
++-+..+.+|++ ..|..|.+|++... ....++++. |-..|..++++.-|.||+|--.+
T Consensus 23 ~c~~g~d~Lfva--~~g~~Vev~~l~~~------------~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 23 VCCGGPDALFVA--ASGCKVEVYDLEQE------------ECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eeccCCceEEEE--cCCCEEEEEEcccC------------CCceeEEEc---chhheeEEEeccccceEEEEEee
Confidence 333343344443 33456999999842 234566663 33568999999999999986544
No 425
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=34.22 E-value=2.9e+02 Score=31.76 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=53.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC---C-Cc-----------------------cCCC--CceeEEEE
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGT---S-SA-----------------------CDAG--TSYVHLYR 320 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~---~-s~-----------------------~~~~--~s~~~l~~ 320 (779)
.|+++.|.++-.-||.+-..|. +-||......... . .. +.+. .....++-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~Ge-Vv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGE-VVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCc-EEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999999888999999998 7788654321100 0 00 0000 01122222
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
++-. ..+|..++.| |=-|+|+|..+|++.|.|+ .|..+.++.
T Consensus 82 ~~~~--~g~vtal~~S-~iGFvaigy~~G~l~viD~--RGPavI~~~ 123 (395)
T PF08596_consen 82 LDAK--QGPVTALKNS-DIGFVAIGYESGSLVVIDL--RGPAVIYNE 123 (395)
T ss_dssp E-----S-SEEEEEE--BTSEEEEEETTSEEEEEET--TTTEEEEEE
T ss_pred eecc--CCcEeEEecC-CCcEEEEEecCCcEEEEEC--CCCeEEeec
Confidence 2111 3469999998 6669999999999999999 334444443
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.01 E-value=83 Score=36.75 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=55.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe
Q 004015 267 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 267 Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS 346 (779)
..++|.+++||+|.+.||.--.+.+ |..+...+.. -...++..-...+..|...+|+.. +-+|.-+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~------------~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDN------------SQLEYTQECKTKNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCce-EEEEecCCCc------------hhhHHHHHhccCcceeEEEEEecC-eeEEEEe
Confidence 3468999999999999999888865 8888875430 011111111112344899999876 5677776
Q ss_pred CCCeEEEEecCCCCCce-eeccCC
Q 004015 347 SRGTSHLFAINPLGGSV-NFQPTD 369 (779)
Q Consensus 347 ~DGTVhIwdl~~~gg~~-~~~~H~ 369 (779)
..| +.+|.+.+-.... .+++|.
T Consensus 131 ~~G-~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 131 DQG-IEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred cCC-eEEEEEchhhhhhhhhhhcc
Confidence 655 6777776644333 224553
No 427
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=33.52 E-value=99 Score=37.05 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCC-----EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE
Q 004015 271 ISALCFDPSGILLVTASVQGH-----NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~DGt-----~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg 345 (779)
.-.|+|+|.|+|.+.-+..+. ..-+|.+... ++ ....+..+.++-..+.+...|||||++-+.++
T Consensus 502 PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~--------~p--~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 502 PDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTP--------DP--KTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CCceEECCCCCEEEEecCCCCccCcccccccccccC--------CC--ccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 345999999998776433221 1223322211 11 12233444455555679999999999887654
No 428
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=31.84 E-value=2.5e+02 Score=29.88 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=44.7
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 270 PISALCFDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS--~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
.+...+.|+||+.+|... .++..+.++..... ...+. .| ..+..-+|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------------~~~~~---~g---~~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------------VRPVL---TG---GSLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------------ceeec---cC---CccccccccCCCCEEEEEcC
Confidence 688899999999888776 66665555543321 11111 22 13677899999877777676
Q ss_pred CCeEEEEe
Q 004015 348 RGTSHLFA 355 (779)
Q Consensus 348 DGTVhIwd 355 (779)
+...+++.
T Consensus 86 ~~~~~~~~ 93 (253)
T PF10647_consen 86 SGGVRVVR 93 (253)
T ss_pred CCceEEEE
Confidence 77777764
No 429
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.19 E-value=2.4e+02 Score=31.37 Aligned_cols=86 Identities=12% Similarity=0.261 Sum_probs=57.9
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEE
Q 004015 265 RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI 344 (779)
Q Consensus 265 ~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAt 344 (779)
.+-+..|++|.|||+-+.|.+-...... .||=...| .+.....| .|... --.|.+.-+++|+++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~-iVElt~~G------------dlirtiPL-~g~~D--pE~Ieyig~n~fvi~ 145 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAA-IVELTKEG------------DLIRTIPL-TGFSD--PETIEYIGGNQFVIV 145 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCce-EEEEecCC------------ceEEEecc-cccCC--hhHeEEecCCEEEEE
Confidence 3444569999999998888776666653 34433332 22222223 34332 346899999999999
Q ss_pred EeCCCeEEEEecCCCCCceeec
Q 004015 345 SSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 345 gS~DGTVhIwdl~~~gg~~~~~ 366 (779)
--.++++.++.+...+....++
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred ehhcceEEEEEEcCCccEEecc
Confidence 9999999999998876655443
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=30.04 E-value=2.4e+02 Score=31.61 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=16.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeC
Q 004015 268 KSPISALCFDPSGILLVTASV 288 (779)
Q Consensus 268 t~~IsaLaFSPdG~lLATaS~ 288 (779)
......|+|.|||++.++-+.
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred cccccCceECCCCCEEEeccc
Confidence 355788999999998876553
No 431
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=29.17 E-value=3e+02 Score=30.46 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=43.8
Q ss_pred cEEEEeccCCCCeEEEEEcCC-------CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEE
Q 004015 259 NVIAQFRAHKSPISALCFDPS-------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 331 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPd-------G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~ 331 (779)
.++..+.+| .+++.+.|-.. |.+|++. ..+..|...++... ..+.....+. +....++.
T Consensus 244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~-~~~~~i~~~~~~~~-----------~~~~~~~~~~-~~~~~r~~ 309 (331)
T PF07995_consen 244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVAD-YGGGRIWRLDLDED-----------GSVTEEEEFL-GGFGGRPR 309 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEE-TTTTEEEEEEEETT-----------EEEEEEEEEC-TTSSS-EE
T ss_pred ccceeecCc-cccCceEEECCccCccccCcEEEec-CCCCEEEEEeeecC-----------CCccceEEcc-ccCCCCce
Confidence 466777777 56667777644 4455554 44443444454332 0122223332 22333689
Q ss_pred EEEEcCCCCEEEEEeCCCeEE
Q 004015 332 DISFSDDSNWIMISSSRGTSH 352 (779)
Q Consensus 332 sIaFSpDg~~LAtgS~DGTVh 352 (779)
+|++.|||.+.++...+|.|.
T Consensus 310 ~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 310 DVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTSEEEEEE-TTTTEE
T ss_pred EEEEcCCCeEEEEECCCCeEe
Confidence 999999999888888888764
No 432
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=29.15 E-value=1.9e+02 Score=30.34 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=38.0
Q ss_pred CCcEEE--EEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 73 SQSYVH--MLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 73 Tge~V~--tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
.|+..+ +|++.+...++.+..-+|.+..++.|.||++.++++++++..
T Consensus 216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 454444 677777888888877777777778899999999999999965
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=27.89 E-value=2.8e+02 Score=30.73 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 271 ISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
-.+|+|.|||++|++ ...|+ |.+++
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~-i~~~~ 28 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGR-IWVVD 28 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTE-EEEEE
T ss_pred ceEEEEeCCCcEEEE-eCCce-EEEEe
Confidence 467999999999886 45776 78887
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=27.57 E-value=22 Score=44.15 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=53.2
Q ss_pred CCCeEEEEECC--CCcEEEEecc-----CCCCeEEEE---EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 246 NVGMVIVRDIV--SKNVIAQFRA-----HKSPISALC---FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 246 ~dG~V~VwDl~--s~~~v~~f~a-----Ht~~IsaLa---FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
..|...|||++ .|+....+.- -..++.-+. |-++--++..+..+|+ |++..+...
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra-------------- 215 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRA-------------- 215 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechH--------------
Confidence 45778899876 3443333322 223333333 3345556666666665 677665432
Q ss_pred eEEEEeecCCCcccEEE-----------EEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 316 VHLYRLQRGLTNAVIQD-----------ISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~s-----------IaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+..+-|++.. .+.+ -..||||+.||.++.||.++.|.+-
T Consensus 216 --~~~l~rsHs~-~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 216 --LRSLFRSHSQ-RVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred --HHHHHHhcCC-CcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 0122333221 1222 2379999999999999999888763
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=27.47 E-value=2.9e+02 Score=30.71 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=40.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 268 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 268 t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
...+.++.+.|+|.+++++. .|..++.+| .+ + .... .+.++ ....++++++.++++.++++ .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~--~g--g---------~tW~--~~~~~-~~~~l~~i~~~~~g~~~~vg-~ 233 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE--PG--Q---------TAWT--PHQRN-SSRRLQSMGFQPDGNLWMLA-R 233 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC--CC--C---------CeEE--EeeCC-CcccceeeeEcCCCCEEEEe-c
Confidence 35788999999998887765 465333222 11 0 0011 11222 33458999999999987765 4
Q ss_pred CCeEE
Q 004015 348 RGTSH 352 (779)
Q Consensus 348 DGTVh 352 (779)
.|.+.
T Consensus 234 ~G~~~ 238 (334)
T PRK13684 234 GGQIR 238 (334)
T ss_pred CCEEE
Confidence 57653
No 436
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=25.81 E-value=1.3e+02 Score=21.49 Aligned_cols=24 Identities=29% Similarity=0.725 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 330 IQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 330 I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
|.+|+-++ +|+|++++.+-++||.
T Consensus 4 i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEecC
Confidence 67787775 5999999999999984
No 437
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=25.39 E-value=2.8e+02 Score=31.21 Aligned_cols=57 Identities=4% Similarity=-0.015 Sum_probs=43.4
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEeCC---------------------eEEEEeCCCCcEEEEEe
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAA---------------------QVHCFDAATLEIEYAIL 119 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~d~---------------------~I~IwD~~T~e~l~tl~ 119 (779)
.+.|.-+|..+|+......+++..+.+.|.+++++|++.+ .|.|.|++|+..+..++
T Consensus 222 tGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~ 299 (335)
T TIGR03032 222 RGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLR 299 (335)
T ss_pred CCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEE
Confidence 3677777887887777777888899999998888887432 37778888887776664
No 438
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=25.25 E-value=6.8e+02 Score=29.43 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
..-..|+|.|||++|+|--..|+ |++++-.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~-I~~v~~~ 59 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGK-ILRVNPE 59 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCE-EEEEeCC
Confidence 34577999999999988654577 6777643
No 439
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=24.89 E-value=1.1e+02 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=23.1
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEecCC
Q 004015 331 QDISFSDDSNWIMISSS-RGTSHLFAINP 358 (779)
Q Consensus 331 ~sIaFSpDg~~LAtgS~-DGTVhIwdl~~ 358 (779)
..|++|||+++|.+++. +++||||..+.
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 57999999999877754 68999998764
No 440
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=24.59 E-value=1.7e+02 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=24.5
Q ss_pred EEEEEEcCCCCEEEEEeC-----CCeEEEEecCCCCC
Q 004015 330 IQDISFSDDSNWIMISSS-----RGTSHLFAINPLGG 361 (779)
Q Consensus 330 I~sIaFSpDg~~LAtgS~-----DGTVhIwdl~~~gg 361 (779)
+++++.-|||++|++|.. +....|+++++.|.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 578999999999999964 34567778877543
No 441
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=24.27 E-value=7.1e+02 Score=30.39 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCEEEEEEc-------CcEEEEEeCCeEEEEeCC--CCcEEEEEecCCcccCCCCCCCccccccceeecCceeEeeCCCc
Q 004015 84 SPIYSVRCS-------SRVVAICQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPV 154 (779)
Q Consensus 84 s~V~sV~~s-------~rlLaVs~d~~I~IwD~~--T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpRwLAyas~~~ 154 (779)
..|+.+.|. ..+|||-..+.|.||-+. +.+.-+-+....-...- |+.+=|+=..+-.++.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-----------~~pvLpQGCVWHPk~~ 125 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-----------PFPVLPQGCVWHPKKA 125 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-----------CcccCCCcccccCCCc
Q ss_pred eecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCC
Q 004015 155 VVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSN 234 (779)
Q Consensus 155 i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~ 234 (779)
+..
T Consensus 126 iL~----------------------------------------------------------------------------- 128 (671)
T PF15390_consen 126 ILT----------------------------------------------------------------------------- 128 (671)
T ss_pred eEE-----------------------------------------------------------------------------
Q ss_pred CccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 235 GTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 235 g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
+.++.......=-..++.++.+.++++ +-|-|-||.+||+.|+.|-...-...|||
T Consensus 129 ------VLT~~dvSV~~sV~~d~srVkaDi~~~-G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 129 ------VLTARDVSVLPSVHCDSSRVKADIKTS-GLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ------EEecCceeEeeeeeeCCceEEEeccCC-ceEEEEEecCcCCEEEEEeCCeEEEEEec
No 442
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=24.03 E-value=9.6e+02 Score=26.12 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=38.7
Q ss_pred CeEEEEECCCCcEEEEec--cC----CCCeEEEEEcCC-C----CEEEEEeCCCCEEEEEeCCCC
Q 004015 248 GMVIVRDIVSKNVIAQFR--AH----KSPISALCFDPS-G----ILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~--aH----t~~IsaLaFSPd-G----~lLATaS~DGt~I~Vwdi~~~ 301 (779)
-++.+||+.+.++++++. .+ .+-+..|.++.. + .+.-.++..+.-|.|+|+.++
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~ 98 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG 98 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC
Confidence 378899999999888765 22 356888999883 2 345455555456899999886
No 443
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=23.57 E-value=3.9e+02 Score=24.28 Aligned_cols=17 Identities=12% Similarity=0.503 Sum_probs=12.9
Q ss_pred EEEEEEcCCCCEEEEEe
Q 004015 330 IQDISFSDDSNWIMISS 346 (779)
Q Consensus 330 I~sIaFSpDg~~LAtgS 346 (779)
-..|++|+|+.+|+++-
T Consensus 59 pNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 59 PNGVALSPDESFVLVAE 75 (89)
T ss_dssp EEEEEE-TTSSEEEEEE
T ss_pred cCeEEEcCCCCEEEEEe
Confidence 46899999999887663
No 444
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=23.09 E-value=2.4e+02 Score=30.36 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=49.0
Q ss_pred eEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt-~~IsaLaFSPdG~lLATaS~D-G-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.-.+||+.+++.. .+.-.+ .-.+.=.|-+||++|.+|+.. | +.+++|+-... . ..+++......+ ...|=
T Consensus 47 ~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~--~--~~~~w~e~~~~m-~~~RW- 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTS--D--GTCDWTESPNDM-QSGRW- 119 (243)
T ss_pred EEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCC--C--CCCCceECcccc-cCCCc-
Confidence 3468999987653 333222 234446788999999998763 2 34788875431 0 001110000001 11111
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
--++.-=|||+.|++|+.+
T Consensus 120 ----YpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 120 ----YPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ----cccceECCCCCEEEEeCcC
Confidence 2234456799999999887
No 445
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=23.03 E-value=1.8e+02 Score=26.36 Aligned_cols=53 Identities=9% Similarity=0.147 Sum_probs=32.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEE
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIF 296 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt~I~Vw 296 (779)
.+...|.+.-||..+++.-.-+.+- .--+.|++++|++.|+.+-.- .++.|.|
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 4556799999999998754333332 245779999999977766543 3334444
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=21.05 E-value=7.2e+02 Score=27.98 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEE---EEE------cCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISA---LCF------DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~Isa---LaF------SPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
..+..-|.|-+||+. +..++.| ++.+..++ |+. ..+|.+|+--=.||+ |++||..++
T Consensus 216 v~G~G~G~VdvFd~~-G~l~~r~-as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~-InaFD~~sG----------- 281 (336)
T TIGR03118 216 VAGAGLGYVNVFTLN-GQLLRRV-ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT-INAYDPQSG----------- 281 (336)
T ss_pred ccCCCcceEEEEcCC-CcEEEEe-ccCCcccCCceeeeChhhhCCCCCCeEEeecCCce-eEEecCCCC-----------
Q ss_pred CceeEEEEeecCCCccc----EEEEEEcC-------CCCEEEEEeCCCe
Q 004015 313 TSYVHLYRLQRGLTNAV----IQDISFSD-------DSNWIMISSSRGT 350 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~----I~sIaFSp-------Dg~~LAtgS~DGT 350 (779)
..+-.|....-... ++.|+|-. +.-|+++|-.|.+
T Consensus 282 ---~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~de~ 327 (336)
T TIGR03118 282 ---AQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDDEQ 327 (336)
T ss_pred ---ceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCCcc
No 447
>PRK10115 protease 2; Provisional
Probab=21.01 E-value=8.3e+02 Score=30.11 Aligned_cols=98 Identities=6% Similarity=0.026 Sum_probs=54.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C----CEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G----HNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-G----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
..-.|+|.|+.++..+...-.... ..++|++||+.|+-...+ + ..|..+++.+.. ..-..++.
T Consensus 151 E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~----------~~d~lv~~ 218 (686)
T PRK10115 151 RQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA----------SQDELVYE 218 (686)
T ss_pred EEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh----------hHCeEEEe
Confidence 345789999998864432222222 459999999866554443 2 234445554430 01234443
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCC---eEEEEecCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRG---TSHLFAINP 358 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~ 358 (779)
- .. ......+..+.|++|+.+.+..+ .+.+|+...
T Consensus 219 e--~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 219 E--KD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred e--CC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 2 11 11122455566999987776654 578888543
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=20.93 E-value=5.6e+02 Score=28.65 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=13.9
Q ss_pred CeEEEEEcCCCCEEEEE
Q 004015 270 PISALCFDPSGILLVTA 286 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATa 286 (779)
....|+|+++|+++++-
T Consensus 15 ~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCceeeECCCCCEEEEe
Confidence 45678999999988875
No 449
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=20.15 E-value=3.4e+02 Score=29.83 Aligned_cols=72 Identities=24% Similarity=0.329 Sum_probs=46.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCccc----EEEEEEcCCCCEEEEE
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV----IQDISFSDDSNWIMIS 345 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~----I~sIaFSpDg~~LAtg 345 (779)
-|++|...++|.+|+++-.- ..|-+.|-.++ ..++.| .|..... -...+|=+|-+++-.+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~-~~i~~I~~~tG--------------~I~W~l-gG~~~~df~~~~~~f~~QHdar~~~~~ 208 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNT-STIYKIDPSTG--------------KIIWRL-GGKRNSDFTLPATNFSWQHDARFLNES 208 (299)
T ss_pred EeeeeeecCCccEEEEeccc-CEEEEEECCCC--------------cEEEEe-CCCCCCcccccCCcEeeccCCEEeccC
Confidence 36667888999999886554 33555554443 445555 2321110 1236777888888888
Q ss_pred eCCCeEEEEecC
Q 004015 346 SSRGTSHLFAIN 357 (779)
Q Consensus 346 S~DGTVhIwdl~ 357 (779)
..+++|.|||=.
T Consensus 209 ~~~~~IslFDN~ 220 (299)
T PF14269_consen 209 NDDGTISLFDNA 220 (299)
T ss_pred CCCCEEEEEcCC
Confidence 899999999974
Done!