Query 004015
Match_columns 779
No_of_seqs 414 out of 2062
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:29:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 99.9 2.9E-22 9.8E-27 215.5 26.7 175 64-359 81-272 (355)
2 4gqb_B Methylosome protein 50; 99.9 7.3E-22 2.5E-26 213.0 25.5 215 63-359 102-332 (344)
3 3ow8_A WD repeat-containing pr 99.9 2.8E-21 9.5E-26 205.2 27.3 188 63-371 101-292 (321)
4 4h5i_A Guanine nucleotide-exch 99.9 4.8E-21 1.7E-25 207.2 26.3 182 63-358 156-343 (365)
5 1got_B GT-beta; complex (GTP-b 99.9 3.5E-20 1.2E-24 197.2 32.2 231 63-372 76-315 (340)
6 2ynn_A Coatomer subunit beta'; 99.9 3.6E-20 1.2E-24 194.0 31.5 226 64-368 35-269 (304)
7 1vyh_C Platelet-activating fac 99.9 7.4E-21 2.5E-25 208.4 26.5 227 63-372 129-383 (410)
8 2pbi_B Guanine nucleotide-bind 99.9 6.5E-20 2.2E-24 197.0 31.3 119 240-373 212-330 (354)
9 4gga_A P55CDC, cell division c 99.9 6.5E-20 2.2E-24 200.4 31.8 258 64-362 125-399 (420)
10 4g56_B MGC81050 protein; prote 99.9 7.8E-21 2.7E-25 204.7 23.6 219 64-365 115-350 (357)
11 4ggc_A P55CDC, cell division c 99.9 2.4E-19 8.1E-24 184.3 32.1 255 64-359 45-316 (318)
12 3ow8_A WD repeat-containing pr 99.9 1.1E-19 3.8E-24 192.9 30.0 173 63-356 143-319 (321)
13 4ery_A WD repeat-containing pr 99.8 4.7E-19 1.6E-23 184.2 29.7 186 64-369 45-234 (312)
14 1vyh_C Platelet-activating fac 99.8 1.3E-19 4.6E-24 198.4 25.0 230 63-356 171-409 (410)
15 1nr0_A Actin interacting prote 99.8 6.2E-19 2.1E-23 203.2 31.3 219 64-367 39-279 (611)
16 3frx_A Guanine nucleotide-bind 99.8 8.9E-19 3E-23 184.9 28.4 196 63-358 86-317 (319)
17 1erj_A Transcriptional repress 99.8 1.1E-18 3.7E-23 189.6 28.4 201 63-372 144-355 (393)
18 1got_B GT-beta; complex (GTP-b 99.8 8.1E-19 2.8E-23 186.6 26.5 172 63-355 163-340 (340)
19 4gqb_B Methylosome protein 50; 99.8 3E-19 1E-23 192.6 22.4 117 242-373 143-261 (344)
20 3iz6_a 40S ribosomal protein R 99.8 1.7E-18 5.8E-23 187.2 28.2 261 65-365 47-336 (380)
21 2pbi_B Guanine nucleotide-bind 99.8 3.3E-18 1.1E-22 183.8 28.3 172 63-355 175-354 (354)
22 3ei3_B DNA damage-binding prot 99.8 1.8E-17 6.1E-22 177.0 33.7 189 64-369 96-293 (383)
23 1nr0_A Actin interacting prote 99.8 2.2E-18 7.4E-23 198.7 28.5 114 240-368 462-579 (611)
24 4aow_A Guanine nucleotide-bind 99.8 5.4E-18 1.8E-22 175.9 28.8 233 63-359 60-338 (340)
25 2pm7_B Protein transport prote 99.8 2.7E-18 9.3E-23 179.1 26.5 234 64-360 31-287 (297)
26 3fm0_A Protein CIAO1; WDR39,SG 99.8 5.4E-18 1.8E-22 180.9 28.8 231 64-360 38-285 (345)
27 4e54_B DNA damage-binding prot 99.8 1.7E-18 5.9E-23 190.2 25.5 114 242-370 225-339 (435)
28 3zwl_B Eukaryotic translation 99.8 1.9E-17 6.7E-22 172.5 31.5 242 64-372 54-318 (369)
29 3k26_A Polycomb protein EED; W 99.8 1.5E-18 5.2E-23 181.1 23.0 242 64-357 95-365 (366)
30 3iz6_a 40S ribosomal protein R 99.8 2E-18 6.9E-23 186.6 24.3 177 63-359 179-376 (380)
31 2xzm_R RACK1; ribosome, transl 99.8 1.1E-17 3.7E-22 177.8 29.5 227 63-362 48-289 (343)
32 3bg1_A Protein SEC13 homolog; 99.8 4.3E-18 1.5E-22 179.5 25.3 237 64-360 35-295 (316)
33 2ynn_A Coatomer subunit beta'; 99.8 6.2E-18 2.1E-22 177.0 25.0 109 243-367 72-181 (304)
34 3frx_A Guanine nucleotide-bind 99.8 1.5E-17 5.1E-22 175.5 27.9 183 63-367 39-236 (319)
35 2hes_X YDR267CP; beta-propelle 99.8 1.1E-17 3.6E-22 177.5 26.3 103 242-359 123-231 (330)
36 1erj_A Transcriptional repress 99.8 3E-17 1E-21 178.3 29.2 175 64-359 85-288 (393)
37 3vl1_A 26S proteasome regulato 99.8 6.5E-18 2.2E-22 181.6 23.4 186 64-369 119-334 (420)
38 2ymu_A WD-40 repeat protein; u 99.8 3E-17 1E-21 184.2 29.7 222 63-373 324-553 (577)
39 2ymu_A WD-40 repeat protein; u 99.8 1.1E-17 3.7E-22 187.8 26.0 168 63-355 406-577 (577)
40 4ery_A WD repeat-containing pr 99.8 3.1E-17 1.1E-21 170.4 27.7 189 63-371 86-281 (312)
41 3jrp_A Fusion protein of prote 99.8 1.1E-17 3.8E-22 175.4 24.0 234 64-360 33-289 (379)
42 3dwl_C Actin-related protein 2 99.8 1.1E-18 3.6E-23 185.4 15.5 125 242-370 116-252 (377)
43 3f3f_A Nucleoporin SEH1; struc 99.8 7.4E-17 2.5E-21 165.2 27.4 123 240-365 184-344 (351)
44 4aez_A CDC20, WD repeat-contai 99.8 6.3E-17 2.1E-21 175.4 28.3 227 63-370 112-350 (401)
45 3v7d_B Cell division control p 99.8 3E-17 1E-21 179.8 26.0 235 63-361 141-384 (464)
46 2hes_X YDR267CP; beta-propelle 99.8 4.4E-17 1.5E-21 172.7 25.8 116 243-371 75-199 (330)
47 2pm9_A Protein WEB1, protein t 99.8 3.8E-17 1.3E-21 174.7 24.6 236 64-372 45-308 (416)
48 1r5m_A SIR4-interacting protei 99.8 1.6E-17 5.4E-22 176.6 21.5 226 63-357 170-424 (425)
49 4g56_B MGC81050 protein; prote 99.8 5.8E-18 2E-22 182.2 18.3 116 242-372 155-272 (357)
50 1p22_A F-BOX/WD-repeat protein 99.8 8E-17 2.7E-21 176.4 27.6 211 64-360 153-367 (435)
51 1sq9_A Antiviral protein SKI8; 99.8 8.3E-17 2.8E-21 171.3 26.6 112 240-366 199-330 (397)
52 1gxr_A ESG1, transducin-like e 99.8 1.5E-16 5.1E-21 164.0 26.9 107 244-369 159-265 (337)
53 3dm0_A Maltose-binding peripla 99.8 9.2E-17 3.1E-21 187.2 28.2 225 63-367 404-641 (694)
54 3gre_A Serine/threonine-protei 99.8 1.5E-17 5.1E-22 180.8 19.9 116 241-372 185-306 (437)
55 2w18_A PALB2, fancn, partner a 99.8 5E-17 1.7E-21 177.4 23.6 187 63-356 156-355 (356)
56 3k26_A Polycomb protein EED; W 99.8 4.7E-17 1.6E-21 169.8 22.3 134 64-301 44-193 (366)
57 1gxr_A ESG1, transducin-like e 99.8 3E-16 1E-20 161.8 27.8 170 63-356 162-335 (337)
58 4aez_A CDC20, WD repeat-contai 99.8 3.1E-16 1E-20 169.9 28.6 217 64-362 156-384 (401)
59 4a11_B DNA excision repair pro 99.7 8.8E-17 3E-21 170.3 23.7 184 64-364 66-282 (408)
60 1k8k_C P40, ARP2/3 complex 41 99.7 2.5E-16 8.5E-21 165.4 26.7 202 64-370 30-245 (372)
61 4a11_B DNA excision repair pro 99.7 2E-16 6.9E-21 167.5 26.1 196 63-364 121-371 (408)
62 1r5m_A SIR4-interacting protei 99.7 2.2E-16 7.4E-21 167.8 26.3 237 63-370 67-331 (425)
63 3vl1_A 26S proteasome regulato 99.7 1.5E-16 5E-21 171.0 25.2 202 63-360 160-367 (420)
64 1sq9_A Antiviral protein SKI8; 99.7 4.5E-17 1.5E-21 173.4 20.9 97 248-359 258-396 (397)
65 1pgu_A Actin interacting prote 99.7 3.6E-16 1.2E-20 175.5 29.0 227 64-368 39-293 (615)
66 3mkq_A Coatomer beta'-subunit; 99.7 3.8E-16 1.3E-20 182.7 29.8 228 64-370 35-271 (814)
67 3fm0_A Protein CIAO1; WDR39,SG 99.7 6.1E-16 2.1E-20 164.9 28.6 228 63-360 82-337 (345)
68 3odt_A Protein DOA1; ubiquitin 99.7 2.9E-16 9.9E-21 160.5 24.6 247 64-360 39-298 (313)
69 2j04_B YDR362CP, TAU91; beta p 99.7 2.4E-17 8.1E-22 188.9 18.1 117 241-373 280-401 (524)
70 3mmy_A MRNA export factor; mRN 99.7 1.1E-16 3.7E-21 166.8 21.5 220 63-360 107-348 (368)
71 3i2n_A WD repeat-containing pr 99.7 3.3E-16 1.1E-20 163.2 24.6 234 64-362 44-295 (357)
72 3lrv_A PRE-mRNA-splicing facto 99.7 7.5E-17 2.6E-21 171.1 19.6 110 241-367 142-253 (343)
73 3zwl_B Eukaryotic translation 99.7 2.2E-15 7.5E-20 156.9 29.2 228 63-359 95-347 (369)
74 2ovr_B FBW7, F-BOX/WD repeat p 99.7 3.8E-16 1.3E-20 171.0 24.5 248 62-359 177-443 (445)
75 3sfz_A APAF-1, apoptotic pepti 99.7 5E-16 1.7E-20 191.3 28.3 206 64-373 637-886 (1249)
76 2ovr_B FBW7, F-BOX/WD repeat p 99.7 5.8E-16 2E-20 169.5 25.6 59 63-121 138-198 (445)
77 2aq5_A Coronin-1A; WD40 repeat 99.7 1.9E-16 6.4E-21 171.1 21.2 106 242-362 148-258 (402)
78 1pgu_A Actin interacting prote 99.7 1.6E-16 5.5E-21 178.3 21.5 175 63-358 426-614 (615)
79 3lrv_A PRE-mRNA-splicing facto 99.7 4E-16 1.4E-20 165.5 23.3 104 243-361 187-295 (343)
80 4h5i_A Guanine nucleotide-exch 99.7 7.3E-16 2.5E-20 166.6 25.4 114 248-373 197-316 (365)
81 3gre_A Serine/threonine-protei 99.7 9.2E-17 3.1E-21 174.5 18.4 111 243-369 231-370 (437)
82 2j04_B YDR362CP, TAU91; beta p 99.7 2.1E-16 7E-21 181.1 21.4 115 241-358 370-517 (524)
83 1yfq_A Cell cycle arrest prote 99.7 5.6E-16 1.9E-20 161.1 22.6 230 64-368 33-292 (342)
84 3i2n_A WD repeat-containing pr 99.7 3.4E-16 1.2E-20 163.0 20.5 113 244-359 230-354 (357)
85 3dw8_B Serine/threonine-protei 99.7 6.8E-16 2.3E-20 166.9 23.3 115 241-369 192-327 (447)
86 2aq5_A Coronin-1A; WD40 repeat 99.7 5.1E-16 1.8E-20 167.7 22.1 180 63-361 103-302 (402)
87 2xzm_R RACK1; ribosome, transl 99.7 1.2E-15 4.2E-20 162.0 24.7 113 242-371 92-215 (343)
88 2vdu_B TRNA (guanine-N(7)-)-me 99.7 5.6E-16 1.9E-20 170.7 22.7 106 245-367 168-280 (450)
89 2oaj_A Protein SNI1; WD40 repe 99.7 4.7E-16 1.6E-20 188.7 23.9 176 64-360 39-244 (902)
90 3v7d_B Cell division control p 99.7 2.4E-15 8.1E-20 164.7 26.2 100 240-360 324-423 (464)
91 3sfz_A APAF-1, apoptotic pepti 99.7 1.5E-16 5E-21 196.0 18.2 193 63-369 1024-1218(1249)
92 2pm9_A Protein WEB1, protein t 99.7 2.4E-16 8.2E-21 168.5 17.5 107 241-364 230-343 (416)
93 1p22_A F-BOX/WD-repeat protein 99.7 3.8E-16 1.3E-20 171.1 19.1 218 63-360 192-416 (435)
94 3dw8_B Serine/threonine-protei 99.7 7.8E-16 2.7E-20 166.4 21.3 113 242-369 243-383 (447)
95 2vdu_B TRNA (guanine-N(7)-)-me 99.7 1.3E-15 4.5E-20 167.8 22.6 98 243-356 215-337 (450)
96 3dm0_A Maltose-binding peripla 99.7 5.5E-15 1.9E-19 172.2 28.6 219 63-359 451-694 (694)
97 1k8k_C P40, ARP2/3 complex 41 99.7 1.9E-15 6.6E-20 158.6 22.4 100 244-361 160-277 (372)
98 3ei3_B DNA damage-binding prot 99.7 2.3E-15 7.8E-20 160.7 23.0 214 63-358 140-382 (383)
99 2pm7_B Protein transport prote 99.7 1E-15 3.6E-20 159.5 19.6 115 242-371 71-206 (297)
100 3mmy_A MRNA export factor; mRN 99.7 7.5E-15 2.6E-19 152.8 23.5 225 64-371 64-317 (368)
101 3jro_A Fusion protein of prote 99.7 1.7E-15 5.9E-20 179.4 21.0 232 64-361 31-288 (753)
102 3dwl_C Actin-related protein 2 99.7 5.1E-16 1.8E-20 164.7 14.7 101 244-359 164-282 (377)
103 3vu4_A KMHSV2; beta-propeller 99.7 1.3E-15 4.4E-20 163.6 17.5 117 241-360 210-338 (355)
104 2xyi_A Probable histone-bindin 99.6 1.4E-14 4.8E-19 159.1 25.0 113 243-358 295-410 (430)
105 3jrp_A Fusion protein of prote 99.6 3.2E-15 1.1E-19 156.6 18.9 105 243-362 74-195 (379)
106 1l0q_A Surface layer protein; 99.6 4.2E-14 1.4E-18 150.7 27.4 175 64-361 12-192 (391)
107 4aow_A Guanine nucleotide-bind 99.6 3.1E-14 1.1E-18 147.5 25.4 112 240-368 142-256 (340)
108 2xyi_A Probable histone-bindin 99.6 5.7E-15 1.9E-19 162.2 20.5 103 242-360 248-355 (430)
109 1l0q_A Surface layer protein; 99.6 8E-14 2.7E-18 148.5 27.6 183 63-368 53-243 (391)
110 3bg1_A Protein SEC13 homolog; 99.6 2.2E-15 7.4E-20 158.8 15.0 115 242-370 75-213 (316)
111 2oaj_A Protein SNI1; WD40 repe 99.6 4.6E-15 1.6E-19 180.0 19.9 93 259-368 566-674 (902)
112 3f3f_A Nucleoporin SEH1; struc 99.6 2.8E-14 9.7E-19 146.0 22.8 116 243-361 76-252 (351)
113 3mkq_A Coatomer beta'-subunit; 99.6 5.8E-14 2E-18 164.2 27.3 221 64-365 77-309 (814)
114 4gq1_A NUP37; propeller, trans 99.6 1.6E-14 5.4E-19 157.2 19.5 237 62-358 109-389 (393)
115 3odt_A Protein DOA1; ubiquitin 99.6 1.8E-13 6.3E-18 139.7 26.1 211 75-371 9-227 (313)
116 2w18_A PALB2, fancn, partner a 99.6 8.4E-14 2.9E-18 152.0 24.8 114 240-371 195-327 (356)
117 2j04_A TAU60, YPL007P, hypothe 99.6 2.2E-14 7.6E-19 165.4 20.1 225 242-527 145-383 (588)
118 1yfq_A Cell cycle arrest prote 99.6 2.1E-14 7.3E-19 149.2 17.8 175 63-356 121-322 (342)
119 3bws_A Protein LP49; two-domai 99.6 3.8E-13 1.3E-17 145.3 28.0 173 63-358 233-432 (433)
120 4gga_A P55CDC, cell division c 99.6 6.8E-14 2.3E-18 152.7 22.2 203 88-369 110-321 (420)
121 4ggc_A P55CDC, cell division c 99.6 1.1E-12 3.8E-17 134.4 26.3 132 241-373 122-288 (318)
122 4e54_B DNA damage-binding prot 99.5 1.3E-13 4.5E-18 151.3 19.1 106 242-365 181-289 (435)
123 2ojh_A Uncharacterized protein 99.5 3.9E-12 1.3E-16 127.5 24.3 221 63-360 21-260 (297)
124 3bws_A Protein LP49; two-domai 99.5 3.7E-12 1.3E-16 137.5 25.8 187 63-365 190-397 (433)
125 3jro_A Fusion protein of prote 99.5 8.1E-13 2.8E-17 156.5 19.8 108 240-360 115-240 (753)
126 1pby_B Quinohemoprotein amine 99.5 2.3E-11 8E-16 125.4 28.1 229 64-367 56-319 (337)
127 2hqs_A Protein TOLB; TOLB, PAL 99.5 7.8E-12 2.7E-16 137.6 25.0 102 249-370 292-398 (415)
128 2j04_A TAU60, YPL007P, hypothe 99.5 1.8E-12 6.3E-17 149.6 20.5 92 245-357 199-296 (588)
129 3u4y_A Uncharacterized protein 99.4 2.7E-11 9.3E-16 125.9 23.5 223 64-359 62-305 (331)
130 1jmx_B Amine dehydrogenase; ox 99.4 1E-10 3.4E-15 121.5 27.6 94 253-366 238-333 (349)
131 2hqs_A Protein TOLB; TOLB, PAL 99.4 4.7E-11 1.6E-15 131.4 26.2 94 248-359 247-345 (415)
132 4gq1_A NUP37; propeller, trans 99.4 8.4E-13 2.9E-17 143.6 10.5 108 241-365 104-225 (393)
133 3vgz_A Uncharacterized protein 99.4 7.9E-11 2.7E-15 122.7 24.9 191 63-361 68-265 (353)
134 3u4y_A Uncharacterized protein 99.4 3E-10 1E-14 118.0 28.9 99 248-361 108-210 (331)
135 3vgz_A Uncharacterized protein 99.4 2.2E-10 7.5E-15 119.4 27.5 177 63-361 110-306 (353)
136 2oit_A Nucleoporin 214KDA; NH2 99.4 4.6E-11 1.6E-15 133.0 23.6 107 241-361 165-281 (434)
137 1nir_A Nitrite reductase; hemo 99.3 1.3E-10 4.3E-15 133.4 25.3 188 63-366 158-363 (543)
138 1pby_B Quinohemoprotein amine 99.3 3.6E-10 1.2E-14 116.4 24.6 57 64-120 11-74 (337)
139 1nir_A Nitrite reductase; hemo 99.3 4E-10 1.4E-14 129.2 25.9 197 63-369 199-420 (543)
140 1ri6_A Putative isomerase YBHE 99.3 3E-10 1E-14 117.3 22.0 102 246-362 104-213 (343)
141 1ri6_A Putative isomerase YBHE 99.3 2.5E-09 8.7E-14 110.3 28.1 104 246-360 149-264 (343)
142 2z3z_A Dipeptidyl aminopeptida 99.2 7.1E-11 2.4E-15 136.8 17.2 105 246-361 233-345 (706)
143 1xfd_A DIP, dipeptidyl aminope 99.2 1.3E-10 4.3E-15 134.7 18.8 51 64-114 37-103 (723)
144 2oit_A Nucleoporin 214KDA; NH2 99.2 2E-11 6.8E-16 135.9 11.1 108 243-368 113-232 (434)
145 2z3z_A Dipeptidyl aminopeptida 99.2 2.1E-10 7.1E-15 133.0 19.7 74 271-359 183-294 (706)
146 2ecf_A Dipeptidyl peptidase IV 99.2 1.4E-10 4.7E-15 135.0 16.1 105 248-368 172-331 (741)
147 2ecf_A Dipeptidyl peptidase IV 99.2 2.6E-10 8.9E-15 132.7 17.3 107 249-368 264-377 (741)
148 3scy_A Hypothetical bacterial 99.1 4E-09 1.4E-13 111.7 22.8 108 246-366 231-345 (361)
149 3hfq_A Uncharacterized protein 99.1 1.1E-08 3.8E-13 107.4 24.2 106 246-365 207-324 (347)
150 3hfq_A Uncharacterized protein 99.1 1.3E-08 4.4E-13 107.0 24.6 104 246-359 160-272 (347)
151 3scy_A Hypothetical bacterial 99.1 1.4E-08 5E-13 107.4 24.5 105 246-362 175-295 (361)
152 2ojh_A Uncharacterized protein 99.1 2.2E-09 7.4E-14 107.4 16.3 91 245-349 192-293 (297)
153 1xfd_A DIP, dipeptidyl aminope 99.0 2E-09 6.9E-14 124.6 16.9 96 247-357 227-341 (723)
154 3o4h_A Acylamino-acid-releasin 99.0 2.5E-09 8.5E-14 121.6 15.3 97 250-368 134-236 (582)
155 1z68_A Fibroblast activation p 99.0 1.8E-09 6E-14 125.6 14.1 51 64-114 36-102 (719)
156 1k32_A Tricorn protease; prote 98.9 9.7E-09 3.3E-13 125.7 18.5 104 247-369 357-471 (1045)
157 1k32_A Tricorn protease; prote 98.9 1E-08 3.4E-13 125.6 18.0 96 246-358 398-502 (1045)
158 3o4h_A Acylamino-acid-releasin 98.9 9.3E-09 3.2E-13 116.8 15.9 85 249-357 219-312 (582)
159 1jof_A Carboxy-CIS,CIS-muconat 98.9 1.2E-07 4E-12 101.6 22.4 77 270-359 255-342 (365)
160 2oiz_A Aromatic amine dehydrog 98.9 2.3E-07 7.9E-12 100.3 24.9 56 64-120 31-99 (361)
161 1jof_A Carboxy-CIS,CIS-muconat 98.9 4.3E-07 1.5E-11 97.2 26.1 104 246-361 117-227 (365)
162 4a5s_A Dipeptidyl peptidase 4 98.8 5.9E-08 2E-12 114.4 19.6 106 248-362 228-355 (740)
163 1q7f_A NHL, brain tumor CG1071 98.8 1.7E-06 5.9E-11 88.3 28.0 98 245-359 182-281 (286)
164 3dsm_A Uncharacterized protein 98.8 5E-07 1.7E-11 95.9 23.8 178 64-359 64-254 (328)
165 1jmx_B Amine dehydrogenase; ox 98.8 3.5E-08 1.2E-12 102.2 14.0 103 246-365 63-182 (349)
166 1z68_A Fibroblast activation p 98.7 2.2E-08 7.4E-13 116.4 10.2 53 64-116 90-144 (719)
167 4a5s_A Dipeptidyl peptidase 4 98.7 1.2E-07 4E-12 111.8 16.0 98 247-361 91-205 (740)
168 3pe7_A Oligogalacturonate lyas 98.7 4.6E-07 1.6E-11 96.0 18.9 98 246-359 166-274 (388)
169 3c5m_A Oligogalacturonate lyas 98.6 3E-07 1E-11 97.1 13.6 98 246-359 166-274 (396)
170 3dsm_A Uncharacterized protein 98.6 7.2E-06 2.5E-10 86.9 23.5 94 247-357 202-301 (328)
171 1xip_A Nucleoporin NUP159; bet 98.6 1.5E-06 5E-11 96.3 18.6 82 245-345 143-231 (388)
172 1qks_A Cytochrome CD1 nitrite 98.6 1.5E-05 5E-10 92.3 27.6 182 64-360 177-375 (567)
173 3azo_A Aminopeptidase; POP fam 98.6 6.9E-07 2.4E-11 102.6 16.2 97 248-361 217-326 (662)
174 3no2_A Uncharacterized protein 98.5 6.4E-06 2.2E-10 86.0 20.3 172 64-359 15-196 (276)
175 2gop_A Trilobed protease; beta 98.5 7.7E-06 2.6E-10 85.3 20.3 96 247-369 243-340 (347)
176 3fvz_A Peptidyl-glycine alpha- 98.5 1.3E-05 4.5E-10 84.6 21.7 100 243-358 213-322 (329)
177 3azo_A Aminopeptidase; POP fam 98.4 1.6E-06 5.6E-11 99.4 15.7 97 248-358 161-272 (662)
178 3c5m_A Oligogalacturonate lyas 98.4 4.9E-06 1.7E-10 87.8 18.1 103 248-366 264-390 (396)
179 2mad_H Methylamine dehydrogena 98.4 0.00014 4.8E-09 79.3 27.5 100 246-362 232-354 (373)
180 3e5z_A Putative gluconolactona 98.3 6.2E-05 2.1E-09 77.4 22.6 92 248-357 153-245 (296)
181 3pe7_A Oligogalacturonate lyas 98.3 2.3E-05 7.8E-10 82.9 18.5 93 247-357 101-224 (388)
182 1pjx_A Dfpase, DIISOPROPYLFLUO 98.2 0.00016 5.4E-09 74.1 22.3 97 246-359 196-300 (314)
183 2gop_A Trilobed protease; beta 98.2 4.4E-05 1.5E-09 79.6 18.0 80 247-349 151-236 (347)
184 1xip_A Nucleoporin NUP159; bet 98.2 2E-05 6.7E-10 87.3 15.2 89 246-359 104-192 (388)
185 3fvz_A Peptidyl-glycine alpha- 98.1 0.00013 4.3E-09 77.0 20.5 97 247-359 111-228 (329)
186 2dg1_A DRP35, lactonase; beta 98.1 0.00068 2.3E-08 70.3 25.8 95 248-357 162-262 (333)
187 2xdw_A Prolyl endopeptidase; a 98.1 5.1E-05 1.8E-09 88.7 19.0 98 247-357 258-365 (710)
188 2oiz_A Aromatic amine dehydrog 98.1 6.3E-06 2.1E-10 89.0 9.7 98 246-360 29-142 (361)
189 3sjl_D Methylamine dehydrogena 98.1 0.00026 9E-09 78.2 22.0 104 245-365 244-370 (386)
190 3g4e_A Regucalcin; six bladed 98.1 0.0019 6.5E-08 66.9 27.1 89 269-366 149-237 (297)
191 1mda_H Methylamine dehydrogena 98.0 0.00033 1.1E-08 76.8 21.5 54 65-120 47-114 (368)
192 2hz6_A Endoplasmic reticulum t 98.0 2.1E-06 7.1E-11 93.2 3.7 93 245-360 99-194 (369)
193 1rwi_B Serine/threonine-protei 98.0 0.00025 8.4E-09 71.1 18.4 96 247-359 170-265 (270)
194 1q7f_A NHL, brain tumor CG1071 98.0 0.00043 1.5E-08 70.3 20.0 94 247-357 99-193 (286)
195 2xdw_A Prolyl endopeptidase; a 97.9 0.00066 2.3E-08 79.3 22.8 98 247-360 310-416 (710)
196 3c75_H MADH, methylamine dehyd 97.9 0.00047 1.6E-08 77.2 19.2 56 64-120 99-167 (426)
197 1qks_A Cytochrome CD1 nitrite 97.8 0.00013 4.4E-09 84.4 14.6 107 242-365 171-282 (567)
198 2iwa_A Glutamine cyclotransfer 97.8 0.0032 1.1E-07 66.2 23.9 175 64-359 44-238 (266)
199 3nol_A Glutamine cyclotransfer 97.8 0.0024 8.3E-08 67.0 22.6 164 64-348 65-245 (262)
200 2bkl_A Prolyl endopeptidase; m 97.8 0.00052 1.8E-08 80.1 19.2 95 247-360 201-306 (695)
201 1rwi_B Serine/threonine-protei 97.7 0.00055 1.9E-08 68.5 15.6 94 248-358 129-222 (270)
202 3e5z_A Putative gluconolactona 97.7 0.00011 3.8E-09 75.4 10.6 88 244-346 46-133 (296)
203 2qe8_A Uncharacterized protein 97.7 0.00025 8.6E-09 75.4 13.6 57 64-120 93-163 (343)
204 2ece_A 462AA long hypothetical 97.7 0.0022 7.4E-08 72.3 21.2 86 269-366 321-432 (462)
205 1kb0_A Quinohemoprotein alcoho 97.7 0.0025 8.4E-08 75.0 22.8 57 293-366 459-515 (677)
206 3no2_A Uncharacterized protein 97.7 0.00028 9.5E-09 73.5 13.1 97 241-356 8-106 (276)
207 3nok_A Glutaminyl cyclase; bet 97.7 0.0021 7.2E-08 67.6 19.5 162 64-347 75-254 (268)
208 1kb0_A Quinohemoprotein alcoho 97.6 0.0017 5.8E-08 76.4 19.9 85 246-347 455-540 (677)
209 2dg1_A DRP35, lactonase; beta 97.5 0.00093 3.2E-08 69.3 14.5 102 244-360 62-171 (333)
210 3mbr_X Glutamine cyclotransfer 97.5 0.018 6.3E-07 59.6 23.5 57 64-120 43-103 (243)
211 3hrp_A Uncharacterized protein 97.5 0.012 4.2E-07 64.6 23.5 106 247-367 239-362 (409)
212 2ghs_A AGR_C_1268P; regucalcin 97.5 0.047 1.6E-06 57.4 27.1 97 248-356 161-258 (326)
213 1yr2_A Prolyl oligopeptidase; 97.5 0.0075 2.6E-07 70.9 22.6 97 247-359 242-351 (741)
214 3sjl_D Methylamine dehydrogena 97.5 0.00044 1.5E-08 76.4 11.3 103 247-365 58-176 (386)
215 1yr2_A Prolyl oligopeptidase; 97.5 0.0037 1.2E-07 73.6 19.8 97 247-359 340-442 (741)
216 2ghs_A AGR_C_1268P; regucalcin 97.4 0.019 6.6E-07 60.4 22.8 85 247-349 200-293 (326)
217 2z2n_A Virginiamycin B lyase; 97.4 0.032 1.1E-06 55.8 23.0 92 247-356 161-253 (299)
218 2z2n_A Virginiamycin B lyase; 97.4 0.031 1.1E-06 56.0 22.6 92 247-356 119-211 (299)
219 2bkl_A Prolyl endopeptidase; m 97.3 0.00088 3E-08 78.1 12.4 110 245-368 144-270 (695)
220 2ece_A 462AA long hypothetical 97.3 0.017 5.9E-07 65.0 22.1 100 245-358 161-289 (462)
221 1yiq_A Quinohemoprotein alcoho 97.3 0.025 8.4E-07 66.7 24.3 58 293-367 457-514 (689)
222 2mad_H Methylamine dehydrogena 97.3 0.0024 8.2E-08 69.5 14.2 94 249-359 48-157 (373)
223 1yiq_A Quinohemoprotein alcoho 97.3 0.013 4.6E-07 68.9 21.5 57 64-120 80-149 (689)
224 3q7m_A Lipoprotein YFGL, BAMB; 97.2 0.12 4E-06 54.7 25.8 98 241-360 242-339 (376)
225 3q7m_A Lipoprotein YFGL, BAMB; 97.2 0.31 1.1E-05 51.4 28.9 58 64-121 63-132 (376)
226 2qc5_A Streptogramin B lactona 97.1 0.098 3.3E-06 52.3 23.3 92 247-356 166-258 (300)
227 1mda_H Methylamine dehydrogena 97.1 0.0013 4.4E-08 72.1 9.8 94 249-358 47-158 (368)
228 2hz6_A Endoplasmic reticulum t 97.1 0.00016 5.5E-09 78.3 2.3 95 245-361 56-152 (369)
229 3hrp_A Uncharacterized protein 97.1 0.029 9.9E-07 61.6 20.3 76 270-357 324-409 (409)
230 1fwx_A Nitrous oxide reductase 97.1 0.0075 2.6E-07 70.0 16.1 102 248-358 254-361 (595)
231 2qc5_A Streptogramin B lactona 97.1 0.11 3.9E-06 51.8 23.2 91 248-356 125-216 (300)
232 3iuj_A Prolyl endopeptidase; h 97.1 0.018 6.1E-07 67.4 19.6 95 247-359 304-406 (693)
233 1kv9_A Type II quinohemoprotei 97.0 0.039 1.4E-06 64.6 22.0 57 64-120 76-145 (668)
234 3dr2_A Exported gluconolactona 97.0 0.09 3.1E-06 54.3 22.3 92 248-356 169-265 (305)
235 2iwa_A Glutamine cyclotransfer 96.9 0.078 2.7E-06 55.5 21.2 102 246-365 84-188 (266)
236 3c75_H MADH, methylamine dehyd 96.9 0.0027 9.3E-08 71.0 10.3 98 248-361 99-212 (426)
237 3g4e_A Regucalcin; six bladed 96.9 0.016 5.4E-07 59.9 15.3 99 246-361 33-140 (297)
238 1kv9_A Type II quinohemoprotei 96.7 0.054 1.9E-06 63.4 19.8 86 245-347 435-521 (668)
239 3nok_A Glutaminyl cyclase; bet 96.6 0.071 2.4E-06 56.0 17.9 103 246-365 114-217 (268)
240 3nol_A Glutamine cyclotransfer 96.5 0.062 2.1E-06 56.3 16.8 103 246-365 105-208 (262)
241 2ad6_A Methanol dehydrogenase 96.5 0.11 3.9E-06 59.6 20.7 33 334-366 470-502 (571)
242 1flg_A Protein (quinoprotein e 96.5 0.075 2.6E-06 61.4 19.1 83 246-347 464-549 (582)
243 3iuj_A Prolyl endopeptidase; h 96.3 0.019 6.5E-07 67.1 12.7 109 246-368 153-279 (693)
244 3mbr_X Glutamine cyclotransfer 96.2 0.44 1.5E-05 49.3 20.7 103 246-365 83-186 (243)
245 1pjx_A Dfpase, DIISOPROPYLFLUO 96.2 0.013 4.4E-07 59.7 9.0 88 246-348 44-137 (314)
246 3dr2_A Exported gluconolactona 96.1 0.028 9.4E-07 58.2 11.4 84 245-344 64-147 (305)
247 1fwx_A Nitrous oxide reductase 96.1 0.15 5E-06 59.3 18.0 111 245-359 172-309 (595)
248 2qe8_A Uncharacterized protein 95.9 0.08 2.7E-06 55.9 13.9 109 247-357 92-223 (343)
249 2ad6_A Methanol dehydrogenase 95.7 0.23 7.8E-06 57.1 17.9 80 246-342 442-521 (571)
250 3amr_A 3-phytase; beta-propell 95.7 2.3 7.9E-05 46.3 24.3 101 246-357 151-262 (355)
251 2xzh_A Clathrin heavy chain 1; 95.6 3.2 0.00011 45.1 26.1 59 63-121 86-146 (365)
252 1flg_A Protein (quinoprotein e 95.5 1.7 5.7E-05 50.1 23.8 57 64-120 78-145 (582)
253 1w6s_A Methanol dehydrogenase 95.4 1.2 4.2E-05 51.6 22.4 30 337-366 482-511 (599)
254 1bpo_A Protein (clathrin); cla 94.9 6.2 0.00021 44.4 24.9 204 63-366 85-297 (494)
255 3hxj_A Pyrrolo-quinoline quino 94.4 1.1 3.7E-05 45.5 16.4 94 245-359 232-325 (330)
256 3hxj_A Pyrrolo-quinoline quino 94.3 0.3 1E-05 49.8 11.9 89 244-355 153-241 (330)
257 1w6s_A Methanol dehydrogenase 94.2 3.4 0.00012 47.9 21.9 57 64-120 73-149 (599)
258 2fp8_A Strictosidine synthase; 92.8 5 0.00017 41.3 18.5 73 271-358 231-313 (322)
259 1ijq_A LDL receptor, low-densi 92.8 10 0.00036 39.3 26.5 95 248-358 99-195 (316)
260 2xe4_A Oligopeptidase B; hydro 91.8 0.48 1.6E-05 56.1 10.2 96 248-359 201-305 (751)
261 1npe_A Nidogen, entactin; glyc 90.7 4.8 0.00016 40.2 15.1 96 246-357 56-154 (267)
262 1npe_A Nidogen, entactin; glyc 90.4 15 0.00051 36.4 23.9 73 269-360 167-240 (267)
263 3v65_B Low-density lipoprotein 90.4 22 0.00074 38.2 23.4 74 269-358 202-277 (386)
264 4a2l_A BT_4663, two-component 90.1 34 0.0012 40.0 25.4 98 245-358 374-480 (795)
265 2p4o_A Hypothetical protein; p 89.5 2.5 8.5E-05 43.5 12.1 80 258-357 22-103 (306)
266 3ei3_A DNA damage-binding prot 89.0 13 0.00045 46.4 20.0 95 248-358 904-999 (1158)
267 3pbp_A Nucleoporin NUP82; beta 87.9 5.1 0.00017 44.9 13.6 109 246-358 39-158 (452)
268 4hw6_A Hypothetical protein, I 87.7 30 0.001 38.0 19.9 103 246-355 248-371 (433)
269 3v64_C Agrin; beta propeller, 86.8 34 0.0012 36.0 23.9 95 248-358 138-234 (349)
270 3sov_A LRP-6, low-density lipo 86.1 36 0.0012 35.6 22.7 95 248-358 101-197 (318)
271 4a2l_A BT_4663, two-component 85.9 59 0.002 37.9 25.0 97 246-358 328-436 (795)
272 3v65_B Low-density lipoprotein 85.2 43 0.0015 35.8 24.0 101 248-365 225-325 (386)
273 2fp8_A Strictosidine synthase; 84.7 8.9 0.0003 39.4 12.9 86 246-347 163-248 (322)
274 3p5b_L Low density lipoprotein 84.6 48 0.0016 35.7 26.2 95 248-358 181-277 (400)
275 1xi4_A Clathrin heavy chain; a 84.3 9.6 0.00033 48.7 14.8 50 62-111 84-134 (1630)
276 2xe4_A Oligopeptidase B; hydro 84.1 2 6.8E-05 50.7 8.6 75 266-358 170-256 (751)
277 3sre_A PON1, serum paraoxonase 83.5 12 0.00043 40.4 13.9 97 247-361 138-255 (355)
278 3m0c_C LDL receptor, low-densi 82.9 86 0.0029 37.4 25.2 97 247-359 492-590 (791)
279 2p9w_A MAL S 1 allergenic prot 81.9 5.9 0.0002 42.7 10.4 98 246-357 98-214 (334)
280 3amr_A 3-phytase; beta-propell 81.5 5.9 0.0002 43.1 10.2 101 242-358 44-162 (355)
281 1k3i_A Galactose oxidase precu 79.6 3.4 0.00011 47.8 8.1 95 249-359 220-324 (656)
282 3qqz_A Putative uncharacterize 79.6 17 0.0006 37.3 12.7 101 244-357 45-150 (255)
283 3v64_C Agrin; beta propeller, 78.9 68 0.0023 33.7 24.5 80 269-365 203-282 (349)
284 1n7d_A LDL receptor, low-densi 78.7 20 0.0007 41.9 14.5 49 63-111 385-437 (699)
285 2p4o_A Hypothetical protein; p 77.7 29 0.001 35.3 13.9 96 246-358 51-147 (306)
286 3q6k_A 43.2 kDa salivary prote 77.4 88 0.003 34.1 19.0 56 63-118 122-197 (381)
287 3kya_A Putative phosphatase; s 77.2 60 0.0021 36.7 17.2 30 269-298 310-339 (496)
288 3m0c_C LDL receptor, low-densi 75.3 1.4E+02 0.0049 35.5 25.8 102 248-365 537-639 (791)
289 3tc9_A Hypothetical hydrolase; 74.7 25 0.00086 38.4 13.0 94 248-358 159-257 (430)
290 3qqz_A Putative uncharacterize 74.6 26 0.00089 36.0 12.3 82 263-361 21-103 (255)
291 2p9w_A MAL S 1 allergenic prot 72.7 23 0.0008 38.1 11.7 101 246-361 33-169 (334)
292 3p5b_L Low density lipoprotein 72.0 1.1E+02 0.0038 32.8 25.8 102 249-365 226-327 (400)
293 3zwu_A Alkaline phosphatase PH 69.9 11 0.00039 43.6 9.1 60 272-345 479-548 (592)
294 1cru_A Protein (soluble quinop 68.8 28 0.00096 38.5 11.8 64 270-346 28-98 (454)
295 3tc9_A Hypothetical hydrolase; 67.7 18 0.00061 39.6 9.8 72 271-358 228-301 (430)
296 3a9g_A Putative uncharacterize 67.0 30 0.001 36.8 11.1 95 245-347 46-154 (354)
297 2ism_A Putative oxidoreductase 66.1 34 0.0012 36.2 11.3 72 270-357 32-113 (352)
298 2ism_A Putative oxidoreductase 65.9 28 0.00094 36.9 10.6 93 245-346 48-153 (352)
299 3ei3_A DNA damage-binding prot 63.3 47 0.0016 41.5 13.3 93 248-359 492-592 (1158)
300 3v9f_A Two-component system se 61.9 43 0.0015 39.1 12.1 95 248-358 469-568 (781)
301 3das_A Putative oxidoreductase 60.1 63 0.0022 34.7 12.1 30 269-299 32-61 (347)
302 4hw6_A Hypothetical protein, I 58.2 26 0.00089 38.4 8.9 73 271-359 230-305 (433)
303 1ijq_A LDL receptor, low-densi 57.1 1.7E+02 0.006 29.8 26.6 82 269-365 164-245 (316)
304 3pbp_A Nucleoporin NUP82; beta 55.3 46 0.0016 37.2 10.1 79 267-359 123-211 (452)
305 3a9g_A Putative uncharacterize 52.7 58 0.002 34.5 10.3 60 269-346 29-94 (354)
306 3v9f_A Two-component system se 52.1 3.3E+02 0.011 31.5 23.0 92 247-358 382-478 (781)
307 4a9v_A PHOX; hydrolase, beta-p 50.0 56 0.0019 37.8 10.0 62 270-345 477-548 (592)
308 2vpj_A Kelch-like protein 12; 49.6 2.1E+02 0.007 28.4 18.3 50 64-113 78-139 (301)
309 2g8s_A Glucose/sorbosone dehyd 49.5 52 0.0018 34.8 9.3 44 245-288 36-89 (353)
310 1k3i_A Galactose oxidase precu 49.1 34 0.0011 39.3 8.2 74 273-359 190-275 (656)
311 2xbg_A YCF48-like protein; pho 48.2 2.2E+02 0.0075 29.2 13.8 72 266-355 160-231 (327)
312 3sre_A PON1, serum paraoxonase 43.9 71 0.0024 34.4 9.2 50 248-300 203-252 (355)
313 3q6k_A 43.2 kDa salivary prote 43.5 2.4E+02 0.0083 30.6 13.5 54 248-301 123-191 (381)
314 2xzh_A Clathrin heavy chain 1; 40.3 3.7E+02 0.013 29.2 13.8 110 248-373 87-203 (365)
315 1cru_A Protein (soluble quinop 39.0 1.4E+02 0.0047 32.9 10.9 93 248-348 48-164 (454)
316 1n7d_A LDL receptor, low-densi 37.9 51 0.0017 38.6 7.4 96 246-358 473-571 (699)
317 3kya_A Putative phosphatase; s 36.9 1.4E+02 0.0048 33.7 10.6 66 270-349 140-214 (496)
318 2wg3_C Hedgehog-interacting pr 36.1 3.2E+02 0.011 30.2 13.3 102 244-349 32-160 (463)
319 3das_A Putative oxidoreductase 34.2 2.5E+02 0.0084 30.0 11.6 97 246-347 51-159 (347)
320 3ii7_A Kelch-like protein 7; p 33.6 3.7E+02 0.012 26.7 19.6 51 63-113 69-129 (306)
321 1tl2_A L10, protein (tachylect 33.5 46 0.0016 34.1 5.3 71 270-354 42-112 (236)
322 4gq2_M Nucleoporin NUP120; bet 33.2 93 0.0032 37.9 8.9 36 329-364 237-272 (950)
323 2xn4_A Kelch-like protein 2; s 33.0 3.7E+02 0.013 26.6 19.3 50 64-113 77-135 (302)
324 1zgk_A Kelch-like ECH-associat 30.7 4.2E+02 0.014 26.4 17.1 50 64-113 90-148 (308)
325 4fhn_B Nucleoporin NUP120; pro 28.3 65 0.0022 39.9 6.5 35 330-364 240-274 (1139)
326 2xbg_A YCF48-like protein; pho 28.2 1.8E+02 0.0062 29.9 9.1 60 270-347 123-182 (327)
327 4gq2_M Nucleoporin NUP120; bet 27.5 1.5E+02 0.005 36.1 9.3 31 270-301 237-267 (950)
328 1bpo_A Protein (clathrin); cla 27.1 6.3E+02 0.022 28.5 13.4 111 247-373 85-202 (494)
329 3s94_A LRP-6, low-density lipo 26.7 6.7E+02 0.023 28.5 14.3 112 246-372 16-129 (619)
330 1tl2_A L10, protein (tachylect 26.3 1.2E+02 0.0042 31.0 6.9 66 272-351 91-156 (236)
331 2g8s_A Glucose/sorbosone dehyd 25.7 2.5E+02 0.0085 29.4 9.8 83 260-358 263-352 (353)
332 3sbq_A Nitrous-oxide reductase 24.1 1.6E+02 0.0055 34.2 8.1 103 249-358 299-408 (638)
333 4a0p_A LRP6, LRP-6, low-densit 24.0 7.1E+02 0.024 28.4 13.9 104 246-365 57-160 (628)
334 2vpj_A Kelch-like protein 12; 23.4 5.3E+02 0.018 25.3 19.7 50 64-113 31-89 (301)
335 4asc_A Kelch repeat and BTB do 21.3 4.2E+02 0.014 26.4 10.2 52 248-301 165-222 (315)
336 3f7f_A Nucleoporin NUP120; nuc 21.1 75 0.0026 37.7 4.8 26 23-82 234-259 (729)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=2.9e-22 Score=215.45 Aligned_cols=175 Identities=22% Similarity=0.303 Sum_probs=140.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCC-cEEEEEecCCcccCCCCCCCccccccceee
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLAV 142 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~-e~l~tl~t~p~~~~~p~s~~~~~~~~piAl 142 (779)
++|+|||+++++++.++.+..+|.+|+++++.++++.+++|++||+.+. +.+.++.+ + . +.+++
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~--~------------~~~~~ 145 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR-F--G------------GVCEF 145 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE-E--E------------EEEEE
T ss_pred cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc-C--C------------ceEEE
Confidence 6899999999999999999999999999988899999999999999987 55444432 0 0 01222
Q ss_pred cCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcC
Q 004015 143 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 222 (779)
Q Consensus 143 gpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~ 222 (779)
++.+||++
T Consensus 146 s~~~la~~------------------------------------------------------------------------ 153 (355)
T 3vu4_A 146 SNGLLVYS------------------------------------------------------------------------ 153 (355)
T ss_dssp ETTEEEEE------------------------------------------------------------------------
T ss_pred EccEEEEe------------------------------------------------------------------------
Confidence 22222221
Q ss_pred ccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc---------------E-EEEeccCCCCeEEEEEcCCCCEEEEE
Q 004015 223 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---------------V-IAQFRAHKSPISALCFDPSGILLVTA 286 (779)
Q Consensus 223 si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~---------------~-v~~f~aHt~~IsaLaFSPdG~lLATa 286 (779)
++..+|.|+|||+.++. + +..+.+|..+|++|+|+|||++||||
T Consensus 154 --------------------sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 154 --------------------NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp --------------------ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --------------------CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 12456889999998765 2 78899999999999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+.||+.|+|||+.++ ..+..+.+|.+...|.+++||||+++||+++.|++|+||++...
T Consensus 214 s~d~~~v~iwd~~~~--------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDG--------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ETTCSEEEEEETTTC--------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred eCCCCEEEEEECCCC--------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999975899999875 45677766644567999999999999999999999999999764
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.89 E-value=7.3e-22 Score=212.97 Aligned_cols=215 Identities=13% Similarity=0.134 Sum_probs=144.6
Q ss_pred CCEEEEEECCCCcEEEEEe-----CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-----f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
.++|+|||+.+++.+..++ +...|.+|+|+ +++|++ +.+++|++||+.+++++.++..|...
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~---------- 171 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ---------- 171 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----------
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc----------
Confidence 3789999999998777665 46789999996 566665 67899999999999999999887432
Q ss_pred ccccceeecC---ceeEeeCC--CceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc-ccc
Q 004015 135 IGYGPLAVGP---RWLAYSGS--PVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG-YKK 208 (779)
Q Consensus 135 ~~~~piAlgp---RwLAyas~--~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~-~~~ 208 (779)
...+++.+ ..|+.++. .+.+|+. ...+.+. .+.... ...
T Consensus 172 --V~~~~~~~~~~~~l~s~s~D~~v~iwd~-----------------------------~~~~~~~----~~~~~~~~~~ 216 (344)
T 4gqb_B 172 --VTCVAASPHKDSVFLSCSEDNRILLWDT-----------------------------RCPKPAS----QIGCSAPGYL 216 (344)
T ss_dssp --EEEEEECSSCTTEEEEEETTSCEEEEET-----------------------------TSSSCEE----ECC----CCC
T ss_pred --eEEEEecCCCCCceeeeccccccccccc-----------------------------cccceee----eeecceeecc
Confidence 12344433 23443322 1223321 1100000 000000 000
Q ss_pred cccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC-CEEEEEe
Q 004015 209 LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTAS 287 (779)
Q Consensus 209 ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS 287 (779)
+. +-. .++.. ...++.+..+|.|+|||+++++++.+|.+|...|++|+|+|+| ++|||||
T Consensus 217 ~~--~~~-----------~~p~~------~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 217 PT--SLA-----------WHPQQ------SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp EE--EEE-----------ECSSC------TTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred ce--eee-----------ecCCC------CcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence 00 000 00100 0134567789999999999999999999999999999999998 5899999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCC
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~ 359 (779)
.||+ |+|||+..+ .++++ .|+. ..|.+++||||++ +|++++.||+|++|++.+.
T Consensus 278 ~D~~-i~vwd~~~~---------------~~~~~-~~H~-~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 278 EDCS-LAVLDSSLS---------------ELFRS-QAHR-DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp TTSC-EEEECTTCC---------------EEEEE-CCCS-SCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCe-EEEEECCCC---------------cEEEE-cCCC-CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9998 899998764 23444 4543 4599999999987 5779999999999999653
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.89 E-value=2.8e-21 Score=205.19 Aligned_cols=188 Identities=21% Similarity=0.337 Sum_probs=149.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.+++++.++.. ...+..++|+ +++|++ +.+++|++||+.+.+...++..+... ..
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~------------v~ 168 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF------------IL 168 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC------------EE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce------------EE
Confidence 47899999999999999986 5678899996 566666 57889999999999988888664210 01
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.+++. | +|..
T Consensus 169 -------~~~~s-------------p--------------dg~~------------------------------------ 178 (321)
T 3ow8_A 169 -------SIAYS-------------P--------------DGKY------------------------------------ 178 (321)
T ss_dssp -------EEEEC-------------T--------------TSSE------------------------------------
T ss_pred -------EEEEC-------------C--------------CCCE------------------------------------
Confidence 12222 0 1111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
++.+..+|.|+|||+.+++++..+++|..+|.+|+|+|+|++||+|+.||+ |+|||+
T Consensus 179 ----------------------lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~ 235 (321)
T 3ow8_A 179 ----------------------LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDV 235 (321)
T ss_dssp ----------------------EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEET
T ss_pred ----------------------EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEEC
Confidence 223456789999999999999999999999999999999999999999998 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
... ..+..+ .++ ...|.+++|+||+++|++++.|++|+|||+........+..|...
T Consensus 236 ~~~--------------~~~~~~-~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~ 292 (321)
T 3ow8_A 236 QHA--------------NLAGTL-SGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292 (321)
T ss_dssp TTC--------------CEEEEE-CCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCc--------------ceeEEE-cCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc
Confidence 864 233444 343 345999999999999999999999999999987777777777543
No 4
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.88 E-value=4.8e-21 Score=207.21 Aligned_cols=182 Identities=15% Similarity=0.132 Sum_probs=136.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
+++|+|||+++++++.++++...|++|+|+ +++|+++.++.+.+|+..+++.+........ . ..+.
T Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~--~--------~~v~-- 223 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK--N--------WSLS-- 223 (365)
T ss_dssp SCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT--T--------EEEE--
T ss_pred CCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC--C--------CCEE--
Confidence 589999999999999999999999999996 7899998899999999999887665432100 0 0111
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
-++|.. +|..++...
T Consensus 224 -----~v~fsp---------------------------dg~~l~~~s--------------------------------- 238 (365)
T 4h5i_A 224 -----KINFIA---------------------------DDTVLIAAS--------------------------------- 238 (365)
T ss_dssp -----EEEEEE---------------------------TTEEEEEEE---------------------------------
T ss_pred -----EEEEcC---------------------------CCCEEEEEe---------------------------------
Confidence 123321 122111100
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE----EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV----IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~----v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.+......+++||+..... ...+.+|..+|++|+|||||++||+|+.||+ |+||
T Consensus 239 ---------------------~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-V~iw 296 (365)
T 4h5i_A 239 ---------------------LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-IALV 296 (365)
T ss_dssp ---------------------ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-EEEE
T ss_pred ---------------------cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-EEEE
Confidence 0001122577888876542 4567899999999999999999999999998 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
|+.++ ..+.++.+|+. ..|++|+|||||++||++|.|+||+||+|..
T Consensus 297 d~~~~--------------~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 297 KLKDL--------------SMSKIFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ETTTT--------------EEEEEETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ECCCC--------------cEEEEecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99875 55666666754 4599999999999999999999999999954
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.88 E-value=3.5e-20 Score=197.15 Aligned_cols=231 Identities=14% Similarity=0.163 Sum_probs=154.5
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCc----EEEEEecCCcccCCCCCCCcc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE----IEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e----~l~tl~t~p~~~~~p~s~~~~ 134 (779)
.++|+|||+.+++.++++.. ...|.+++|+ +++|++ +.++.|++||+.+.+ ....+..|...
T Consensus 76 Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~---------- 145 (340)
T 1got_B 76 DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY---------- 145 (340)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC----------
T ss_pred CCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc----------
Confidence 37899999999999999986 5789999996 566665 788999999998764 44555555321
Q ss_pred ccccceeecC-ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 135 IGYGPLAVGP-RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 135 ~~~~piAlgp-RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
...+++.+ ..|+.++. ...+..|-....+.+. ...++.+ .+..
T Consensus 146 --v~~~~~~~~~~l~s~s~---------------------------d~~i~~wd~~~~~~~~---~~~~h~~--~v~~-- 189 (340)
T 1got_B 146 --LSCCRFLDDNQIVTSSG---------------------------DTTCALWDIETGQQTT---TFTGHTG--DVMS-- 189 (340)
T ss_dssp --EEEEEEEETTEEEEEET---------------------------TSCEEEEETTTTEEEE---EECCCSS--CEEE--
T ss_pred --EEEEEECCCCcEEEEEC---------------------------CCcEEEEECCCCcEEE---EEcCCCC--ceEE--
Confidence 11122111 11222211 1112111111111000 0001100 0000
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
-.. .+. ...++++..||.|+|||+.++.++..|.+|..+|.+|+|+|+|++||+|+.||+ |
T Consensus 190 ~~~-----------~~~-------~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v 250 (340)
T 1got_B 190 LSL-----------APD-------TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-C 250 (340)
T ss_dssp EEE-----------CTT-------SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-E
T ss_pred EEE-----------CCC-------CCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-E
Confidence 000 111 113567788999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
+|||+... ..+..+........|.+++|+||+++|++|+.||+|+|||+........+.+|...+
T Consensus 251 ~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v 315 (340)
T 1got_B 251 RLFDLRAD--------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315 (340)
T ss_dssp EEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEECCCC--------------cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE
Confidence 99999865 233333222222359999999999999999999999999998877777788886443
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.88 E-value=3.6e-20 Score=194.01 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=156.4
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+++++. ..+|.+++|+ +++|++ +.|++|++||+.+++++.++..|... ...
T Consensus 35 g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~------------v~~ 102 (304)
T 2ynn_A 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY------------IRS 102 (304)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC------------EEE
T ss_pred CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc------------EEE
Confidence 7799999999999999986 6789999995 555554 77899999999999999999887532 233
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+++.| ++||.++.+ ..+..|-....+.+.. ...++.. .+. +-..
T Consensus 103 ~~~~~~~~~l~sgs~D---------------------------~~v~lWd~~~~~~~~~--~~~~h~~--~v~--~v~~- 148 (304)
T 2ynn_A 103 IAVHPTKPYVLSGSDD---------------------------LTVKLWNWENNWALEQ--TFEGHEH--FVM--CVAF- 148 (304)
T ss_dssp EEECSSSSEEEEEETT---------------------------SCEEEEEGGGTTEEEE--EECCCCS--CEE--EEEE-
T ss_pred EEEcCCCCEEEEECCC---------------------------CeEEEEECCCCcchhh--hhcccCC--cEE--EEEE-
Confidence 55544 455555322 1121111111100000 0001110 000 0000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP--SGILLVTASVQGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSP--dG~lLATaS~DGt~I~ 294 (779)
++.. ...++++..||.|+|||+.+......+. .|...|.+++|+| ++.+||+|+.||+ |+
T Consensus 149 ----------~p~~------~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~ 211 (304)
T 2ynn_A 149 ----------NPKD------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IK 211 (304)
T ss_dssp ----------CTTC------TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EE
T ss_pred ----------CCCC------CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EE
Confidence 0100 0135677889999999999887766665 6678999999987 7889999999997 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
|||+..+ ..+..+ .|+. ..|.+++|+|++++||+++.||+|+|||+.++.....+..|
T Consensus 212 iWd~~~~--------------~~~~~~-~~h~-~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 212 IWDYQTK--------------SCVATL-EGHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp EEETTTT--------------EEEEEE-ECCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEeCCCC--------------ccceee-CCCC-CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 9999875 445555 3433 45999999999999999999999999999988766667665
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.87 E-value=7.4e-21 Score=208.41 Aligned_cols=227 Identities=12% Similarity=0.222 Sum_probs=162.3
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.+++.+++++. ...|.+|+|+ +++|++ +.|++|++||+.+++++.++..|... ..
T Consensus 129 Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~------------V~ 196 (410)
T 1vyh_C 129 DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN------------VS 196 (410)
T ss_dssp SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC------------EE
T ss_pred CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC------------EE
Confidence 37899999999999999985 6789999996 556655 78899999999999999888776421 22
Q ss_pred ceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 139 piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.+++.| ++|+.++.+ +.+|+ ....+.+. ...++.. ...
T Consensus 197 ~v~~~p~~~~l~s~s~D~~i~~wd-----------------------------~~~~~~~~---~~~~h~~------~v~ 238 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASRDKTIKMWE-----------------------------VQTGYCVK---TFTGHRE------WVR 238 (410)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEE-----------------------------TTTCCEEE---EEECCSS------CEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEE-----------------------------CCCCcEEE---EEeCCCc------cEE
Confidence 344444 455555332 22221 11110000 0001100 000
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC---------------
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS--------------- 279 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd--------------- 279 (779)
.+. .+++ | ..++++..||.|+|||+.+++++..+.+|...|.+++|+|+
T Consensus 239 ~~~---------~~~~----g---~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 239 MVR---------PNQD----G---TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp EEE---------ECTT----S---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred EEE---------ECCC----C---CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 000 0010 1 13566778999999999999999999999999999999997
Q ss_pred -----CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 280 -----GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 280 -----G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
|.+|++|+.||+ |+|||+..+ ..+..+ .|+ ...|.+++|+|++++|++++.||+|+||
T Consensus 303 ~~~~~g~~l~sgs~D~~-i~iwd~~~~--------------~~~~~~-~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKT-IKMWDVSTG--------------MCLMTL-VGH-DNWVRGVLFHSGGKFILSCADDKTLRVW 365 (410)
T ss_dssp -----CCEEEEEETTSE-EEEEETTTT--------------EEEEEE-ECC-SSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred ccCCCCCEEEEEeCCCe-EEEEECCCC--------------ceEEEE-ECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 789999999997 999999875 344555 343 3459999999999999999999999999
Q ss_pred ecCCCCCceeeccCCCCC
Q 004015 355 AINPLGGSVNFQPTDANF 372 (779)
Q Consensus 355 dl~~~gg~~~~~~H~~~~ 372 (779)
|+........+.+|...+
T Consensus 366 d~~~~~~~~~~~~h~~~v 383 (410)
T 1vyh_C 366 DYKNKRCMKTLNAHEHFV 383 (410)
T ss_dssp CCTTSCCCEEEECCSSCE
T ss_pred ECCCCceEEEEcCCCCcE
Confidence 998887777888885443
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.87 E-value=6.5e-20 Score=197.02 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=98.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++++..||.|++||+++++++..+.+|...|.+++|+|+|.+||||+.||+ |+|||+... ..+.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~--------------~~~~ 276 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRAD--------------REVA 276 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCC--------------cEEE
Confidence 3566778999999999999999999999999999999999999999999998 899999864 2223
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
.+........+.+++|+||+++|++++.|++|+|||+........+.+|...+.
T Consensus 277 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~ 330 (354)
T 2pbi_B 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS 330 (354)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEE
Confidence 332222223488999999999999999999999999988766667778865443
No 9
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.87 E-value=6.5e-20 Score=200.35 Aligned_cols=258 Identities=16% Similarity=0.173 Sum_probs=157.4
Q ss_pred CEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf---~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+.+|++++.+++ ...|.+|+|+ +++||+ +.|++|++||+.+++++.++..|... .
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------v 192 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------V 192 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------E
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------e
Confidence 7899999999999999886 3569999996 567766 67899999999999999999877432 2
Q ss_pred cceeecCceeEeeCCCc--eecCCCc--cCCccccccc--cc-ccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 138 GPLAVGPRWLAYSGSPV--VVSNDGR--VNPQHLMQSR--SF-SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~--i~~~sgr--vspq~ls~s~--~~-s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
..++..++.|+.++.+. ..++... ..-..+.... .. .....+|..++....+. ...+.+.......
T Consensus 193 ~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~-------~v~i~~~~~~~~~ 265 (420)
T 4gga_A 193 GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-------LVNVWPSAPGEGG 265 (420)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------CEEEEESSCCSSC
T ss_pred EEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccc-------cceEEeecccccc
Confidence 34556667777776542 2222110 0000000000 00 00011233332222111 1111111000000
Q ss_pred cccccccCCCcCcccc-c-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-
Q 004015 211 QYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS- 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~s-a-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS- 287 (779)
.............+.. + ++.. ..++ ....+..||.|+|||+.+++++..+..| ..|.++.|+|++..|++++
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~--~~~l--a~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQ--SNVL--ATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTC--TTEE--EEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEEC
T ss_pred ceeeeeecccCCceeeeeeCCCc--ccEE--EEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEe
Confidence 0000000000011110 0 1110 0111 0123567899999999999999988876 4789999999999998876
Q ss_pred -CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 288 -VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 288 -~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.||+ |+|||+.++ ..+.++ +|+. ..|.+|+|||||++||+|+.|++|+||++......
T Consensus 341 ~~d~~-I~iwd~~~~--------------~~v~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 341 FAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp TTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred cCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 6787 899999865 455666 4654 46999999999999999999999999999765433
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.87 E-value=7.8e-21 Score=204.70 Aligned_cols=219 Identities=12% Similarity=0.128 Sum_probs=137.0
Q ss_pred CEEEEEECCCCcEEEEEe-----CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-----f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
++|+|||+.+++.+...+ +...|.+|+|+ +++|++ +.+++|++||+.+++++..+..|...
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~----------- 183 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE----------- 183 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----------
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-----------
Confidence 679999999998765443 35789999996 556655 67899999999999999999876431
Q ss_pred cccceeecC---ceeEeeCC--CceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 136 GYGPLAVGP---RWLAYSGS--PVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 136 ~~~piAlgp---RwLAyas~--~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
...+++.+ ..|+.++. .+.+|+... .+.+.
T Consensus 184 -v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-----------------------------~~~~~--------------- 218 (357)
T 4g56_B 184 -VNCVAACPGKDTIFLSCGEDGRILLWDTRK-----------------------------PKPAT--------------- 218 (357)
T ss_dssp -EEEEEECTTCSSCEEEEETTSCEEECCTTS-----------------------------SSCBC---------------
T ss_pred -EEEEEEccCCCceeeeeccCCceEEEECCC-----------------------------Cceee---------------
Confidence 22344432 23333322 122332110 00000
Q ss_pred cccccccCCCcCcccc-c-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC-CEEEEEe
Q 004015 211 QYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTAS 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~s-a-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS 287 (779)
... .......+.. + ++.. ...++.+..+|.|+|||+.+++++..+.+|..+|++|+|+|+| ++||||+
T Consensus 219 -~~~--~~~~~~~v~~v~~sp~~------~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 219 -RID--FCASDTIPTSVTWHPEK------DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp -BCC--CTTCCSCEEEEEECTTS------TTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE
T ss_pred -eee--eccccccccchhhhhcc------cceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe
Confidence 000 0000000000 0 0100 0134566789999999999999999999999999999999997 6899999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.||+ |+|||+..+ ..+..+ ++ ...|++|+||| |+++||+++.||+|+||++...+....+
T Consensus 290 ~D~~-i~iwd~~~~--------------~~~~~~--~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 290 EDCT-VAVLDADFS--------------EVFRDL--SH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350 (357)
T ss_dssp TTSC-EEEECTTSC--------------EEEEEC--CC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--------
T ss_pred CCCE-EEEEECCCC--------------cEeEEC--CC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccc
Confidence 9998 899999865 333332 43 34699999998 8999999999999999999876554443
No 11
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.86 E-value=2.4e-19 Score=184.30 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=152.3
Q ss_pred CEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf---~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+.+|++++++++ ...|.+|+|+ +++|++ +.|++|++||+.+++++.++..|... .
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------~ 112 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------V 112 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------E
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------------E
Confidence 6799999999999999985 4569999996 566665 67899999999999999999887432 1
Q ss_pred cceeecCceeEeeCCCce--ecC--CCccCCccccccc---ccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVV--VSN--DGRVNPQHLMQSR---SFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i--~~~--sgrvspq~ls~s~---~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
..++..+..|+.++.... .+. .+......+.... ........+..++....+ |...+.+.......
T Consensus 113 ~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 113 GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------NLVNVWPSAPGEGG 185 (318)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------SCEEEEESSCBTTB
T ss_pred EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------cceeEEECCCCccc
Confidence 224444566666654321 111 1100000000000 000011123333222111 11112221110000
Q ss_pred cccccccCCCcCccccc--cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-
Q 004015 211 QYCSEFLPDSQNSLQSA--IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS- 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa--~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS- 287 (779)
...........+.+... .+.. ..++ .+..+..++.|+|||.........+ .|...|.+++|+|++..|++++
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQ--SNVL--ATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTS--TTEE--EEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEEC
T ss_pred ccceeeecccCCceEEEEecCCC--CcEE--EEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEE
Confidence 00000000000111100 0100 0000 1235667899999999988776554 5677899999999999988776
Q ss_pred -CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 288 -VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 288 -~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.||+ |+|||+.++ ..+.++ +|+. ..|.+|+||||+++||+++.||+|+|||+...
T Consensus 261 ~~d~~-i~iwd~~~~--------------~~~~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 261 FAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 6887 899999875 455566 4543 46999999999999999999999999999653
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.1e-19 Score=192.86 Aligned_cols=173 Identities=15% Similarity=0.227 Sum_probs=139.7
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+++++.+.++.. ...|.+++|+ +++|++ +.++.|++||+.+++++.++..|..+
T Consensus 143 dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~-------------- 208 (321)
T 3ow8_A 143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP-------------- 208 (321)
T ss_dssp TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--------------
T ss_pred CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc--------------
Confidence 37899999999999998876 5679999996 566665 67899999999999999988765321
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+ +.|++.. ++.
T Consensus 209 -v----~~l~~sp---------------------------d~~------------------------------------- 219 (321)
T 3ow8_A 209 -I----RSLTFSP---------------------------DSQ------------------------------------- 219 (321)
T ss_dssp -C----CEEEECT---------------------------TSC-------------------------------------
T ss_pred -e----eEEEEcC---------------------------CCC-------------------------------------
Confidence 1 1123321 111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
.++++..||.|+|||+.+++.+..+.+|...|.+|+|+|+|++|++++.||+ |+|||+
T Consensus 220 ---------------------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~ 277 (321)
T 3ow8_A 220 ---------------------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDV 277 (321)
T ss_dssp ---------------------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEET
T ss_pred ---------------------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeC
Confidence 1233456899999999999999999999999999999999999999999998 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
.++ ..+.++. ++ ...|.+++|+||+++|++++.||+|+|||+
T Consensus 278 ~~~--------------~~~~~~~-~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 278 GTR--------------TCVHTFF-DH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TTT--------------EEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCC--------------EEEEEEc-CC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 875 4455553 33 345999999999999999999999999997
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.85 E-value=4.7e-19 Score=184.23 Aligned_cols=186 Identities=15% Similarity=0.226 Sum_probs=146.6
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+..+.. ...|.+++|+ +++|++ +.++.|++||+.+++++.++..|...
T Consensus 45 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------------- 109 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--------------- 109 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------
T ss_pred CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC---------------
Confidence 6799999999999998874 6789999996 456655 67899999999999999988766321
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ ..+++.. ++.
T Consensus 110 v----~~~~~~~---------------------------~~~-------------------------------------- 120 (312)
T 4ery_A 110 V----FCCNFNP---------------------------QSN-------------------------------------- 120 (312)
T ss_dssp E----EEEEECS---------------------------SSS--------------------------------------
T ss_pred E----EEEEEcC---------------------------CCC--------------------------------------
Confidence 1 0122220 111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.+..+|.|+|||+.+++++..+..|..+|.+++|+|+|++|++++.||+ |+|||+.
T Consensus 121 --------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~ 179 (312)
T 4ery_A 121 --------------------LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTA 179 (312)
T ss_dssp --------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT
T ss_pred --------------------EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEECC
Confidence 1233456789999999999999999999999999999999999999999998 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
.+ ..+..+... ....|..++|+|++++|++++.||+|+|||+........+.+|.
T Consensus 180 ~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 180 SG--------------QCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp TC--------------CEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred CC--------------ceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence 65 233444322 23458999999999999999999999999998876656666664
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.84 E-value=1.3e-19 Score=198.41 Aligned_cols=230 Identities=9% Similarity=0.119 Sum_probs=150.1
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.++++++++.. ...|.+|+|+ +++|+ .+.|++|++||+.+++++.++..|... ..
T Consensus 171 D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~------------v~ 238 (410)
T 1vyh_C 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW------------VR 238 (410)
T ss_dssp TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC------------EE
T ss_pred CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc------------EE
Confidence 37799999999999998874 6789999995 45554 578999999999999999999877431 12
Q ss_pred ceeecC--ceeEeeCCC--ceecCCCccCCc-ccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 139 PLAVGP--RWLAYSGSP--VVVSNDGRVNPQ-HLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 139 piAlgp--RwLAyas~~--~i~~~sgrvspq-~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
.+++.+ ++||.++.+ +.+|+.....+. .+. .....+...+.. -+..+..+....
T Consensus 239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---------~h~~~v~~~~~~------------~~~~~~~~~~~~ 297 (410)
T 1vyh_C 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---------EHRHVVECISWA------------PESSYSSISEAT 297 (410)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---------CCSSCEEEEEEC------------CSCGGGGGGGCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec---------CCCceEEEEEEc------------Ccccccchhhhc
Confidence 233333 556655432 333421100000 000 000111110000 000000000000
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
+ ... ... . .. ...++++..||.|+|||+.++.++..+.+|...|.+|+|+|+|++|++|+.||+ |
T Consensus 298 ------~--~~~-~~~-~-~~---g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i 362 (410)
T 1vyh_C 298 ------G--SET-KKS-G-KP---GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-L 362 (410)
T ss_dssp ------S--CC-------------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-E
T ss_pred ------c--ccc-ccc-C-CC---CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-E
Confidence 0 000 000 0 00 124567888999999999999999999999999999999999999999999997 9
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+|||+..+ ..+..+ .++ ...|.+++|+|++.+||+|+.||+|+||++
T Consensus 363 ~vwd~~~~--------------~~~~~~-~~h-~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 363 RVWDYKNK--------------RCMKTL-NAH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECCTTS--------------CCCEEE-ECC-SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEECCCC--------------ceEEEE-cCC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999764 222333 233 345999999999999999999999999986
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.84 E-value=6.2e-19 Score=203.19 Aligned_cols=219 Identities=14% Similarity=0.158 Sum_probs=152.7
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+++++.+.++. +...|.+|+|+ +++||+ +.|++|+|||+.+.+ .+.++..|.. ..
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~------------~v 106 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG------------PV 106 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS------------CE
T ss_pred CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC------------ce
Confidence 679999999999999886 47889999996 677776 578999999997654 4456655532 12
Q ss_pred cceeecC--ceeEeeCCC------ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 138 GPLAVGP--RWLAYSGSP------VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 138 ~piAlgp--RwLAyas~~------~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
..++++| +.||.++.. +..|+.|. .+.. ..|+.
T Consensus 107 ~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-------------------------------~~~~---l~gh~----- 147 (611)
T 1nr0_A 107 KDISWDSESKRIAAVGEGRERFGHVFLFDTGT-------------------------------SNGN---LTGQA----- 147 (611)
T ss_dssp EEEEECTTSCEEEEEECCSSCSEEEEETTTCC-------------------------------BCBC---CCCCS-----
T ss_pred EEEEECCCCCEEEEEECCCCceeEEEEeeCCC-------------------------------Ccce---ecCCC-----
Confidence 3455554 555554311 11222110 0000 00000
Q ss_pred ccccccccCCCcCccccc--cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 004015 210 SQYCSEFLPDSQNSLQSA--IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa--~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS 287 (779)
..+... ++. + ...++++..|++|+|||..+++++.+|.+|...|.+++|+|||++||||+
T Consensus 148 ------------~~v~~v~f~p~----~--~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 148 ------------RAMNSVDFKPS----R--PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp ------------SCEEEEEECSS----S--SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ------------CCceEEEECCC----C--CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence 000000 010 0 01256778899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec------CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR------GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r------G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.||+ |+|||+.++ ..+..+.. ++ ...|.+++|+||+++||+++.|++|+|||+.....
T Consensus 210 ~D~~-i~lwd~~~g--------------~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 210 GDGT-IVLYNGVDG--------------TKTGVFEDDSLKNVAH-SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp TTSC-EEEEETTTC--------------CEEEECBCTTSSSCSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCc-EEEEECCCC--------------cEeeeecccccccccc-CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 9998 899998765 23334422 33 34599999999999999999999999999987655
Q ss_pred ceeecc
Q 004015 362 SVNFQP 367 (779)
Q Consensus 362 ~~~~~~ 367 (779)
...+..
T Consensus 274 ~~~~~~ 279 (611)
T 1nr0_A 274 EKTIPV 279 (611)
T ss_dssp EEEEEC
T ss_pred eeeecC
Confidence 555543
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.84 E-value=8.9e-19 Score=184.94 Aligned_cols=196 Identities=12% Similarity=0.192 Sum_probs=133.0
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+++++++.++. +...|.+|+|+ +++|+ .+.|++|++||+. .+++.++..|... ..
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~------------v~ 152 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW------------VS 152 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSC------------EE
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCc------------EE
Confidence 4789999999999999987 47899999996 44554 5789999999996 4566666555211 00
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
. +++.... - . ..++
T Consensus 153 ~-------~~~~~~~-------------~-----~---~~~~-------------------------------------- 166 (319)
T 3frx_A 153 Q-------VRVVPNE-------------K-----A---DDDS-------------------------------------- 166 (319)
T ss_dssp E-------EEECCC---------------------------C--------------------------------------
T ss_pred E-------EEEccCC-------------C-----C---CCCc--------------------------------------
Confidence 1 1111000 0 0 0000
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
..++++..+|.|++||+.+.+....+.+|..+|.+|+|+|+|++||+++.||+ |+|||+
T Consensus 167 --------------------~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~ 225 (319)
T 3frx_A 167 --------------------VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNL 225 (319)
T ss_dssp --------------------CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEET
T ss_pred --------------------cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEEC
Confidence 02345567899999999999999999999999999999999999999999997 999999
Q ss_pred CCCCC-----CCCC----ccCCC--------CceeEEEEee---------cC---C---CcccEEEEEEcCCCCEEEEEe
Q 004015 299 IPGIL-----GTSS----ACDAG--------TSYVHLYRLQ---------RG---L---TNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 299 ~~~~~-----g~~s----~~~~~--------~s~~~l~~l~---------rG---~---t~a~I~sIaFSpDg~~LAtgS 346 (779)
..... .... +..+. .....++.+. .. . ....|.+++|||||++|++|+
T Consensus 226 ~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp TTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 76411 0000 00000 0111222211 10 0 122377899999999999999
Q ss_pred CCCeEEEEecCC
Q 004015 347 SRGTSHLFAINP 358 (779)
Q Consensus 347 ~DGTVhIwdl~~ 358 (779)
.||+|+||++.+
T Consensus 306 ~Dg~i~vWd~~t 317 (319)
T 3frx_A 306 TDNVIRVWQVMT 317 (319)
T ss_dssp TTSCEEEEEEEE
T ss_pred cCceEEEEEEee
Confidence 999999998864
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.83 E-value=1.1e-18 Score=189.60 Aligned_cols=201 Identities=14% Similarity=0.197 Sum_probs=143.1
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.+++.+..++ +...|.+|+|+ +++|+ .+.|++|++||+.++++..++.... ...
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-------------~v~ 210 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-------------GVT 210 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-------------CEE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC-------------CcE
Confidence 3679999999999999987 47789999995 44554 5789999999999999887774321 000
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.+++. | .+|.
T Consensus 211 -------~~~~~-------------~-------------~~~~------------------------------------- 220 (393)
T 1erj_A 211 -------TVAVS-------------P-------------GDGK------------------------------------- 220 (393)
T ss_dssp -------EEEEC-------------S-------------TTCC-------------------------------------
T ss_pred -------EEEEE-------------C-------------CCCC-------------------------------------
Confidence 11221 0 0111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-------RAHKSPISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-------~aHt~~IsaLaFSPdG~lLATaS~DGt 291 (779)
.++.+..+|.|+|||+.++..+..+ .+|...|.+|+|+|+|++|++|+.||+
T Consensus 221 ---------------------~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 221 ---------------------YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ---------------------EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 1233456889999999999888777 689999999999999999999999997
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
|+|||+........... .........+ .|+. ..|.+++|+|++++|++++.||+|+|||+........+++|...
T Consensus 280 -v~~wd~~~~~~~~~~~~--~~~~~~~~~~-~~h~-~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 280 -VKLWNLQNANNKSDSKT--PNSGTCEVTY-IGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp -EEEEEC-----------------CEEEEE-ECCS-SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred -EEEEECCCCCCcccccC--CCCCcceEEE-eccc-CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC
Confidence 99999976311000000 0001122333 3433 35999999999999999999999999999987776777888543
Q ss_pred C
Q 004015 372 F 372 (779)
Q Consensus 372 ~ 372 (779)
+
T Consensus 355 v 355 (393)
T 1erj_A 355 V 355 (393)
T ss_dssp E
T ss_pred E
Confidence 3
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.83 E-value=8.1e-19 Score=186.58 Aligned_cols=172 Identities=13% Similarity=0.189 Sum_probs=134.1
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+++++.+.++. +...|.+++|+ +++|++ +.++.|++||+.+++++.++..|... ..
T Consensus 163 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~------------v~ 230 (340)
T 1got_B 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD------------IN 230 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC------------EE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCC------------EE
Confidence 3779999999999999987 46789999996 456655 67999999999999999888765321 11
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
. +++. | ++.
T Consensus 231 ~-------v~~~-------------p--------------~~~------------------------------------- 239 (340)
T 1got_B 231 A-------ICFF-------------P--------------NGN------------------------------------- 239 (340)
T ss_dssp E-------EEEC-------------T--------------TSS-------------------------------------
T ss_pred E-------EEEc-------------C--------------CCC-------------------------------------
Confidence 1 2222 0 111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.++++..||.|+|||+.+++.+..+. .+...|.+++|+|+|++|++|+.||+ |+||
T Consensus 240 ---------------------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vw 297 (340)
T 1got_B 240 ---------------------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVW 297 (340)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEE
T ss_pred ---------------------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEE
Confidence 12334568999999999998887776 34468999999999999999999997 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
|+... ..+..+ .|+. ..|.+++|+||+++||+|+.||+|+||+
T Consensus 298 d~~~~--------------~~~~~~-~~h~-~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 298 DALKA--------------DRAGVL-AGHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTTC--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcccC--------------cEeeEe-ecCC-CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 98764 233444 3443 4699999999999999999999999996
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.83 E-value=3e-19 Score=192.56 Aligned_cols=117 Identities=12% Similarity=0.170 Sum_probs=93.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+++..||+|+|||+.+++++..|.+|+..|.+++|+|++. +|+|++.||+ |+|||+..+ ..+..
T Consensus 143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~-v~iwd~~~~--------------~~~~~ 207 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLWDTRCP--------------KPASQ 207 (344)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSC-EEEEETTSS--------------SCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccc-ccccccccc--------------ceeee
Confidence 3456789999999999999999999999999999999985 8999999998 899999875 22233
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
+........+.+++|+| ++++||+|+.||+|+|||+........+.+|...+.
T Consensus 208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVT 261 (344)
T ss_dssp CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEE
T ss_pred eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEE
Confidence 32222234589999999 567899999999999999998888888888865443
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.82 E-value=1.7e-18 Score=187.20 Aligned_cols=261 Identities=16% Similarity=0.169 Sum_probs=157.9
Q ss_pred EEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcE-EEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 65 VVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRV-VAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 65 tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rl-LaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
++..|+..+..+.++|+. ...|++|+|+ +++ ++.+.|++|+|||+.+++++.++..|... ...+
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~------------v~~~ 114 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW------------VMEC 114 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT------------CCCC
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC------------EEEE
Confidence 355677778888888875 7899999996 444 45578999999999999999999877432 1234
Q ss_pred eecC--ceeEeeCCC--ceecCCCc-------cCC-ccccccc------ccccccCCCcceeeeecccccchhceeeecC
Q 004015 141 AVGP--RWLAYSGSP--VVVSNDGR-------VNP-QHLMQSR------SFSGFASNGSRVAHYAKESSKHLAAGIVNLG 202 (779)
Q Consensus 141 Algp--RwLAyas~~--~i~~~sgr-------vsp-q~ls~s~------~~s~~~s~g~~va~~A~~~sK~La~Gl~~lG 202 (779)
+++| ++||.++.+ +.+|+... ... ..+.... .+.+ ..+..++....+ |...++
T Consensus 115 ~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--~~~~~l~s~s~D-------~~i~~w 185 (380)
T 3iz6_a 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQETRLITGSGD-------QTCVLW 185 (380)
T ss_dssp EECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS--SSSSCEEEECTT-------SCEEEE
T ss_pred EECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec--CCCCEEEEECCC-------CcEEEE
Confidence 4544 678877653 33443110 000 0011000 0000 011111111111 111222
Q ss_pred CccccccccccccccCCC-cCccccccCCCCCCCccCCcccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCCC
Q 004015 203 DLGYKKLSQYCSEFLPDS-QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 203 d~~~~~ls~y~~~l~p~~-~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~-s~~~v~~f~aHt~~IsaLaFSPdG 280 (779)
|.........+....+.+ ...+....... .+ ...++++..||.|+|||++ ...++..+.+|.++|.+|+|+|+|
T Consensus 186 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~---~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 186 DVTTGQRISIFGSEFPSGHTADVLSLSINS-LN---ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp CTTTCCEEEEECCCSSSSCCSCEEEEEECS-SS---CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EcCCCcEEEEeecccCCCCccCeEEEEeec-CC---CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 221111000000000000 00000000000 00 1246778899999999998 557889999999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC-----CcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----TNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~-----t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
++||||+.||+ |+|||+..+ ..+..+.... ....|.+++|||+|++|++|+.||+|+|||
T Consensus 262 ~~l~s~s~D~~-i~lwd~~~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 262 QRFGTGSDDGT-CRLFDMRTG--------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp SEEEEECSSSC-EEEEETTTT--------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CeEEEEcCCCe-EEEEECCCC--------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 99999999998 899999875 2333332211 112388999999999999999999999999
Q ss_pred cCCCCCceee
Q 004015 356 INPLGGSVNF 365 (779)
Q Consensus 356 l~~~gg~~~~ 365 (779)
+........+
T Consensus 327 ~~~~~~~~~~ 336 (380)
T 3iz6_a 327 TLLAEMVLNL 336 (380)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCceEEEE
Confidence 9876555555
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.82 E-value=3.3e-18 Score=183.76 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=133.8
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
.++|+|||+.++++++++.. ...|..+.++ +++|++ +.|++|++||+.+++++.++..|...
T Consensus 175 D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~------------ 242 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD------------ 242 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------
T ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC------------
Confidence 37899999999999999985 6789999884 345554 78999999999999999888766321
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.+. +++. | ++.
T Consensus 243 v~~-------v~~~-------------p--------------~~~----------------------------------- 253 (354)
T 2pbi_B 243 VNS-------VRYY-------------P--------------SGD----------------------------------- 253 (354)
T ss_dssp EEE-------EEEC-------------T--------------TSS-----------------------------------
T ss_pred eEE-------EEEe-------------C--------------CCC-----------------------------------
Confidence 111 2222 0 111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH--t~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
.++++..||.|+|||+++.+.+..+..+ ...+++++|+|+|++|++++.||+ |+
T Consensus 254 -----------------------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~ 309 (354)
T 2pbi_B 254 -----------------------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-IN 309 (354)
T ss_dssp -----------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EE
T ss_pred -----------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EE
Confidence 1233456899999999999888777644 458999999999999999999998 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
|||+..+ ..+..+ .++ ...|.+++|||||++||+++.||+|+||+
T Consensus 310 vwd~~~~--------------~~~~~l-~~h-~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 310 VWDVLKG--------------SRVSIL-FGH-ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTTC--------------SEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCC--------------ceEEEE-ECC-CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999765 233444 344 34699999999999999999999999996
No 22
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.82 E-value=1.8e-17 Score=176.99 Aligned_cols=189 Identities=10% Similarity=0.106 Sum_probs=141.0
Q ss_pred CEEEEEECCCCcEEEEEe---CCCCEEEEEEcC---cEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 64 TVVHFYSLRSQSYVHMLK---FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk---f~s~V~sV~~s~---rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
++|+|||+.+++....++ +...|.+|+|+. ++|++ +.++.|++||+.+ +.+..+..+....
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~----------- 163 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD----------- 163 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS-----------
T ss_pred CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC-----------
Confidence 679999999999998887 578999999964 45554 6789999999996 5555554431100
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.++ ..+++.. ++.
T Consensus 164 -~~v----~~~~~~~---------------------------~~~----------------------------------- 176 (383)
T 3ei3_B 164 -YWY----CCVDVSV---------------------------SRQ----------------------------------- 176 (383)
T ss_dssp -CCE----EEEEEET---------------------------TTT-----------------------------------
T ss_pred -CCe----EEEEECC---------------------------CCC-----------------------------------
Confidence 001 1122221 111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINI 295 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~V 295 (779)
.++.+..+|.|++||+ +++++..+.+|...|.+|+|+|+|+ +|++++.||+ |+|
T Consensus 177 -----------------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~i 231 (383)
T 3ei3_B 177 -----------------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKL 231 (383)
T ss_dssp -----------------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEE
T ss_pred -----------------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEE
Confidence 1233456799999999 5778999999999999999999999 9999999987 999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
||+..... ....+..+ + +...|.+++|+| |+++|++++.|++|+|||+........+..|.
T Consensus 232 wd~~~~~~----------~~~~~~~~--~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 232 WDLRNIKD----------KNSYIAEM--P-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp EEGGGCCS----------TTCEEEEE--E-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred EeCCCCCc----------ccceEEEe--c-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 99986310 01233333 2 234699999999 99999999999999999999888777777774
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.82 E-value=2.2e-18 Score=198.69 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=88.4
Q ss_pred cccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 240 HFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
.++.+..||.|+|||+.++.. +.. .+|...|++|+|||||++||+++.|++ |++|++... ...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~-------------~~~ 526 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANN-------------FEL 526 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGT-------------TEE
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCC-------------Cce
Confidence 466778899999999987653 344 689999999999999999999999998 899998752 011
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCce--eeccC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV--NFQPT 368 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~--~~~~H 368 (779)
+.....+.+...|.+++|||||++||+++.|++|+||++....... .+.+|
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 1110122234569999999999999999999999999998765332 34556
No 24
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.82 E-value=5.4e-18 Score=175.86 Aligned_cols=233 Identities=13% Similarity=0.164 Sum_probs=141.7
Q ss_pred CCEEEEEECCCCc-----EEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRSQS-----YVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~Tge-----~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
.++|+|||+.+++ .+++++. ...|.+++|+ +++|+ .+.++.|++|+............+....
T Consensus 60 D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~-------- 131 (340)
T 4aow_A 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV-------- 131 (340)
T ss_dssp TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE--------
T ss_pred CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCce--------
Confidence 3779999997754 4566654 6789999996 55555 4788999999999998877776542211
Q ss_pred cccccceeec--CceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 134 GIGYGPLAVG--PRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 134 ~~~~~piAlg--pRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
..+... .++|+.++.+ +.+|+.... ... -....+... .+
T Consensus 132 ----~~~~~~~~~~~l~s~s~d~~~~~~d~~~~-----------------------------~~~--~~~~~~~~~--~v 174 (340)
T 4aow_A 132 ----LSVAFSSDNRQIVSGSRDKTIKLWNTLGV-----------------------------CKY--TVQDESHSE--WV 174 (340)
T ss_dssp ----EEEEECTTSSCEEEEETTSCEEEECTTSC-----------------------------EEE--EECSSSCSS--CE
T ss_pred ----eEEEEeecCccceeecCCCeEEEEEeCCC-----------------------------ceE--EEEeccccC--cc
Confidence 111111 1344443221 122211000 000 000000000 00
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
. +....++. . ...++++..++.|++||+.+++++..+.+|..+|++|+|+|+|++||+|+.|
T Consensus 175 ~--~~~~~~~~-----------~-----~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 236 (340)
T 4aow_A 175 S--CVRFSPNS-----------S-----NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236 (340)
T ss_dssp E--EEEECSCS-----------S-----SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred c--ceEEccCC-----------C-----CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 0 00000000 0 1123456788999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCC-----CCCC------------ccCCCCceeEEEEeecC----------------CCcccEEEEEEc
Q 004015 290 GHNINIFKIIPGIL-----GTSS------------ACDAGTSYVHLYRLQRG----------------LTNAVIQDISFS 336 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~-----g~~s------------~~~~~~s~~~l~~l~rG----------------~t~a~I~sIaFS 336 (779)
|+ |+|||+..... +... ..........+|.+..+ .....|.+++|+
T Consensus 237 g~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 315 (340)
T 4aow_A 237 GQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315 (340)
T ss_dssp CE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred Ce-EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence 97 89999886411 0000 00000011122222110 123358999999
Q ss_pred CCCCEEEEEeCCCeEEEEecCCC
Q 004015 337 DDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 337 pDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|||++||+|+.||+|+||++.++
T Consensus 316 ~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 316 ADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCCEEEEEeCCCEEEEEeCCCc
Confidence 99999999999999999999875
No 25
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.82 E-value=2.7e-18 Score=179.10 Aligned_cols=234 Identities=13% Similarity=0.154 Sum_probs=142.0
Q ss_pred CEEEEEECCC--CcEEEEEe-CCCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLRS--QSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~T--ge~V~tLk-f~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+.+ ++++.+|+ +..+|.+|+|+ +++|+. +.|++|++||+.+++ .+.++..|..
T Consensus 31 ~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~---------- 100 (297)
T 2pm7_B 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA---------- 100 (297)
T ss_dssp SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS----------
T ss_pred CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC----------
Confidence 6799999974 46778887 47899999995 456665 779999999999874 4555554432
Q ss_pred cccccceeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 134 GIGYGPLAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 134 ~~~~~piAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
....+++.| .+||.++.+ +.+|+. ...+.... ....++..
T Consensus 101 --~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~-----------------------------~~~~~~~~-~~~~~h~~-- 146 (297)
T 2pm7_B 101 --SVNSVQWAPHEYGPMLLVASSDGKVSVVEF-----------------------------KENGTTSP-IIIDAHAI-- 146 (297)
T ss_dssp --CEEEEEECCGGGCSEEEEEETTSEEEEEEB-----------------------------CSSSCBCC-EEEECCSS--
T ss_pred --ceeEEEeCcCCCCcEEEEEECCCcEEEEEe-----------------------------cCCCceee-eeeecccC--
Confidence 123344443 355554332 222211 00000000 00000000
Q ss_pred ccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCC---
Q 004015 208 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSG--- 280 (779)
Q Consensus 208 ~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG--- 280 (779)
.+. +-...|+...... ...... -...++++..||.|+|||+.++. ++..|.+|...|.+|+|+|++
T Consensus 147 ~v~--~~~~~p~~~~~~~-~~~~~~----~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 147 GVN--SASWAPATIEEDG-EHNGTK----ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp CEE--EEEECCCC-----------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred ccc--eEeecCCcccccc-cCCCCC----CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 000 0000111000000 000000 01246778889999999998765 677899999999999999995
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.+|||++.||+ |+|||+.... + . .....+........|.+++|+||+++||+++.||+|+||+....+
T Consensus 220 ~~las~s~D~~-v~iWd~~~~~-~---------~-~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 220 SYMASVSQDRT-CIIWTQDNEQ-G---------P-WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp EEEEEEETTSC-EEEEEESSTT-S---------C-CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eEEEEEECCCc-EEEEEeCCCC-C---------c-cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 89999999998 8999987530 0 0 111122111123459999999999999999999999999987543
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.81 E-value=5.4e-18 Score=180.87 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=146.8
Q ss_pred CEEEEEECCCCcEEEEEe----CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCC--cEEEEEecCCcccCCCCCCCcc
Q 004015 64 TVVHFYSLRSQSYVHMLK----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL--EIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk----f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~--e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
++|+|||+.+++.+.... +...|.+|+|+ +++|++ +.|++|++||+.+. +++.++..|...
T Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~---------- 107 (345)
T 3fm0_A 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE---------- 107 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC----------
T ss_pred CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC----------
Confidence 679999999987654332 46789999996 566665 67999999999876 467777766432
Q ss_pred ccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeec-CCcccccc
Q 004015 135 IGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL-GDLGYKKL 209 (779)
Q Consensus 135 ~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~l-Gd~~~~~l 209 (779)
...++++| ++||.++.+ +.+|+. +..+... -+..+ ++.. .+
T Consensus 108 --v~~v~~sp~~~~l~s~s~D~~v~iwd~-----------------------------~~~~~~~-~~~~~~~h~~--~v 153 (345)
T 3fm0_A 108 --VKSVAWAPSGNLLATCSRDKSVWVWEV-----------------------------DEEDEYE-CVSVLNSHTQ--DV 153 (345)
T ss_dssp --EEEEEECTTSSEEEEEETTSCEEEEEE-----------------------------CTTSCEE-EEEEECCCCS--CE
T ss_pred --ceEEEEeCCCCEEEEEECCCeEEEEEC-----------------------------CCCCCeE-EEEEecCcCC--Ce
Confidence 23355544 566665432 223311 0000000 00000 0000 00
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPdG~lLATaS 287 (779)
... ...|+ ...++.+..||.|+|||+.++. ++.++.+|...|.+|+|+|+|++||+++
T Consensus 154 ~~~--~~~p~------------------~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 154 KHV--VWHPS------------------QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp EEE--EECSS------------------SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEE--EECCC------------------CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 000 00011 1135677889999999998875 5578999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCC-CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 288 VQGHNINIFKIIPGILGT-SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~-~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.||+ |+|||+....... ............+..+ .+.+...|++++|+|++.+||+++.|++|+||++....
T Consensus 214 ~D~~-v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 214 DDRT-VRIWRQYLPGNEQGVACSGSDPSWKCICTL-SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp TTSC-EEEEEEECTTCTTCCCCC---CEEEEEEEE-CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred CCCe-EEEeccccCCCCccceeeccCCccceeEEe-cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 9998 8999974321100 0000001122334444 34445569999999999999999999999999997643
No 27
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.81 E-value=1.7e-18 Score=190.23 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=90.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+..+|.|+|||+.. +.+..+.+|..+|++|+|+|++. +|++|+.||+ |+|||+....... . +.
T Consensus 225 ~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~~~~-----------~-~~ 290 (435)
T 4e54_B 225 VTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRGKA-----------S-FL 290 (435)
T ss_dssp EEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCCSSS-----------C-CS
T ss_pred EEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEecccccccc-----------e-EE
Confidence 3456789999999975 56788999999999999999986 8899999998 8999998641100 0 01
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
...++ ...|.+++|||||++|++++.||+|+||++........+..|..
T Consensus 291 ~~~~h-~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 291 YSLPH-RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp BCCBC-SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred Eeeec-cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 11222 34599999999999999999999999999999888888877743
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.9e-17 Score=172.47 Aligned_cols=242 Identities=10% Similarity=0.127 Sum_probs=157.5
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+.+++ +...|.+++|+ +++|++ +.++.|++||+.+++++..+. +.. ....
T Consensus 54 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~------------~v~~ 120 (369)
T 3zwl_B 54 SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV------------PVKR 120 (369)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS------------CEEE
T ss_pred CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC------------CeEE
Confidence 679999999999999998 57899999996 556555 678999999999999998886 321 1223
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+++.| ++|+.+..... .....+..|.....+... .+..........+..
T Consensus 121 ~~~~~~~~~l~~~~~~~~----------------------~~~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~------ 171 (369)
T 3zwl_B 121 VEFSPCGNYFLAILDNVM----------------------KNPGSINIYEIERDSATH-ELTKVSEEPIHKIIT------ 171 (369)
T ss_dssp EEECTTSSEEEEEECCBT----------------------TBCCEEEEEEEEECTTTC-CEEEECSSCSEEEEC------
T ss_pred EEEccCCCEEEEecCCcc----------------------CCCCEEEEEEecCCccce-eecccccceeeeccC------
Confidence 44444 55555432100 000111111111110000 000000000000000
Q ss_pred CCCcCcccc--ccCCCCCCCccCCcccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 218 PDSQNSLQS--AIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 218 p~~~~si~s--a~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
..+...+.. ..+. ...++.+..+|.|++||+.+ ...+..+..|..+|.+++|+|+|++|++++.||+ |+
T Consensus 172 ~~~~~~~~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~ 243 (369)
T 3zwl_B 172 HEGLDAATVAGWSTK-------GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SF 243 (369)
T ss_dssp CTTCCCEEEEEECGG-------GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EE
T ss_pred CcCccceeEEEEcCC-------CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EE
Confidence 000000000 0010 11345667889999999999 7889999999999999999999999999999987 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC--------------eEEEEecCCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG--------------TSHLFAINPLG 360 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG--------------TVhIwdl~~~g 360 (779)
|||+..+ ..+..+. ....+.+++|+|+++++++++.++ ++++|++....
T Consensus 244 v~d~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 244 LVDVSTL--------------QVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp EEETTTC--------------CEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred EEECCCC--------------ceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 9999875 3334443 234599999999999999999999 89999998887
Q ss_pred CceeeccCCCCC
Q 004015 361 GSVNFQPTDANF 372 (779)
Q Consensus 361 g~~~~~~H~~~~ 372 (779)
....+.+|...+
T Consensus 307 ~~~~~~~~~~~v 318 (369)
T 3zwl_B 307 EIGRVQGHFGPL 318 (369)
T ss_dssp EEEEEECCSSCE
T ss_pred chhheecccCcE
Confidence 777777775443
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.81 E-value=1.5e-18 Score=181.08 Aligned_cols=242 Identities=8% Similarity=0.049 Sum_probs=149.6
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CcEEEE-EeCCeEEEEeCCCCcEEEEEe---cCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAIL---TNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~T~e~l~tl~---t~p~~~~~p~s~~~~~ 135 (779)
++|++||+.+++.+..+. +...|.+|+|+ +++|++ +.++.|++||+.+++.+..+. .+..
T Consensus 95 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------ 162 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD------------ 162 (366)
T ss_dssp CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS------------
T ss_pred CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC------------
Confidence 679999999999999998 68899999995 456665 668999999999999988884 3321
Q ss_pred cccceeecC--ceeEeeCCC--ceecCCCccCC-cccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 136 GYGPLAVGP--RWLAYSGSP--VVVSNDGRVNP-QHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 136 ~~~piAlgp--RwLAyas~~--~i~~~sgrvsp-q~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
....++++| ++|+.++.+ +.+|+...... ..+.....+++ ++..++.... ......+...
T Consensus 163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----------~~~~~~~~~~- 227 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP---NKTNRPFISQ-----------KIHFPDFSTR- 227 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG---GGCSSCCCCE-----------EECCCSEEEC-
T ss_pred ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC---CCCcccccce-----------eeccCccccc-
Confidence 123355544 566666432 33332110000 00000000000 0000000000 0000000000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--------------EEEEeccCCCCeEEEEE
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--------------VIAQFRAHKSPISALCF 276 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~--------------~v~~f~aHt~~IsaLaF 276 (779)
......+..... ....++.+..+|.|++||+.+.. .+..+..|..+|.+|+|
T Consensus 228 -------~~~~~~v~~~~~-------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (366)
T 3k26_A 228 -------DIHRNYVDCVRW-------LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 293 (366)
T ss_dssp -------SSCSSCCCEEEE-------ETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred -------cCCcceEEEEEE-------cCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence 000000000000 01245677789999999998764 48889999999999999
Q ss_pred cCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 277 DPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 277 SPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
+|+ |++||+++.||. |+|||+..+.. ....+..+........|.+++|+||+++|++++.||+|+||
T Consensus 294 s~~~~~~~l~~~~~dg~-i~vwd~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 294 SMDFWQKMLALGNQVGK-LYVWDLEVEDP----------HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp EECTTSSEEEEECTTSC-EEEEECCSSSG----------GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCCcEEEEEecCCc-EEEEECCCCCC----------ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 999 999999999998 89999987510 11133344322113569999999999999999999999999
Q ss_pred ecC
Q 004015 355 AIN 357 (779)
Q Consensus 355 dl~ 357 (779)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 985
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.81 E-value=2e-18 Score=186.64 Aligned_cols=177 Identities=12% Similarity=0.199 Sum_probs=133.6
Q ss_pred CCEEEEEECCCCcEEEEEe------CCCCEEEEEEc---CcEEEE-EeCCeEEEEeCC-CCcEEEEEecCCcccCCCCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLK------FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk------f~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~-T~e~l~tl~t~p~~~~~p~s~ 131 (779)
.++|+|||+++++.+..+. +...|.++.++ +++|+. +.|++|++||++ +.+.+.++..|...
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~------- 251 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD------- 251 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------
T ss_pred CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------
Confidence 5789999999999999883 34679999994 455554 789999999998 45666666655321
Q ss_pred CccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 132 ~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
...+ ++. | +|.
T Consensus 252 -----v~~v-------~~~-------------p--------------~~~------------------------------ 262 (380)
T 3iz6_a 252 -----INSV-------KFF-------------P--------------DGQ------------------------------ 262 (380)
T ss_dssp -----CCEE-------EEC-------------T--------------TSS------------------------------
T ss_pred -----eEEE-------EEe-------------c--------------CCC------------------------------
Confidence 1111 221 0 111
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCC-------CeEEEEEcCCCCEEE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS-------PISALCFDPSGILLV 284 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~-------~IsaLaFSPdG~lLA 284 (779)
.++++..||+|+|||+.++..+..+..|.. .|++++|+|+|++|+
T Consensus 263 ----------------------------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 263 ----------------------------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp ----------------------------EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred ----------------------------eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 234456789999999999999988876543 489999999999999
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee---cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 285 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 285 TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~---rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+|+.||+ |+|||+..+ ..+..+. .++ ...|.+++|||||++||+|+.||+|+||++...
T Consensus 315 ~g~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 315 AGYSNGD-CYVWDTLLA--------------EMVLNLGTLQNSH-EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSC-EEEEETTTC--------------CEEEEECCSCSSC-CCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCC-EEEEECCCC--------------ceEEEEecccCCC-CCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999998 899998764 2333332 333 345999999999999999999999999999754
No 31
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.81 E-value=1.1e-17 Score=177.82 Aligned_cols=227 Identities=15% Similarity=0.192 Sum_probs=143.5
Q ss_pred CCEEEEEECCCC-------cEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCC
Q 004015 63 PTVVHFYSLRSQ-------SYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 63 ~~tVrIWDL~Tg-------e~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~ 131 (779)
.++|+|||+.++ ..+.++. +...|.+|+|+ +++|++ +.|++|++||+.+++++.++..|...
T Consensus 48 D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~------- 120 (343)
T 2xzm_R 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE------- 120 (343)
T ss_dssp TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC-------
T ss_pred CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc-------
Confidence 377999999754 4566665 46789999996 456554 77999999999999999999887432
Q ss_pred CccccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 132 GIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 132 ~~~~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
...++++| ++|+.++.+ +.+|+.... ..+.. .........+..
T Consensus 121 -----v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~----~~~~~~~~~v~~---------------------- 167 (343)
T 2xzm_R 121 -----VYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSS----AEKENHSDWVSC---------------------- 167 (343)
T ss_dssp -----EEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEEC----CTTTSCSSCEEE----------------------
T ss_pred -----EEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeee----ecccCCCceeee----------------------
Confidence 23355554 566665432 333321000 00000 000000000000
Q ss_pred ccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 004015 208 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 208 ~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS 287 (779)
-...|+..... ...+ ....++.+..+|.|+||| .....+..+.+|..+|.+|+|+|+|++||||+
T Consensus 168 ------~~~~~~~~~~~-~~~~-------~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 168 ------VRYSPIMKSAN-KVQP-------FAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp ------EEECCCCCSCS-CCCS-------SCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ------eeecccccccc-ccCC-------CCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 00011110000 0000 012456778899999999 45677888999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.||+ |+|||+.... .....+..+ ..|.+++|+||+++|+++ .|++|+||++.+....
T Consensus 233 ~dg~-v~iwd~~~~~-------------~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 233 KDKK-LLIWDILNLT-------------YPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA 289 (343)
T ss_dssp TTCE-EEEEESSCCS-------------SCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred CCCe-EEEEECCCCc-------------ccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence 9997 8999985420 111122222 349999999999998765 5788999999876443
No 32
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.80 E-value=4.3e-18 Score=179.47 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=142.4
Q ss_pred CEEEEEECCCCc--EEEEEe-CCCCEEEEEEc----CcEEE-EEeCCeEEEEeCCCC--cEEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVA-ICQAAQVHCFDAATL--EIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~Tge--~V~tLk-f~s~V~sV~~s----~rlLa-Vs~d~~I~IwD~~T~--e~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+++++ ++.+++ +..+|.+|+|+ +++|+ .+.|++|++||+.++ +++.++..|...
T Consensus 35 ~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~--------- 105 (316)
T 3bg1_A 35 RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS--------- 105 (316)
T ss_dssp TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC---------
T ss_pred CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc---------
Confidence 789999999885 456666 47899999995 45555 578999999999987 456666665321
Q ss_pred cccccceeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 134 GIGYGPLAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 134 ~~~~~piAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
...++++| .+||.++.+ +.+|+. ...+....-....++..
T Consensus 106 ---V~~v~~~p~~~g~~lasgs~D~~i~lwd~-----------------------------~~~~~~~~~~~~~~h~~-- 151 (316)
T 3bg1_A 106 ---VNSVCWAPHDYGLILACGSSDGAISLLTY-----------------------------TGEGQWEVKKINNAHTI-- 151 (316)
T ss_dssp ---CCEEEECCTTTCSCEEEECSSSCEEEEEE-----------------------------CSSSCEEECCBTTSSSS--
T ss_pred ---eEEEEECCCCCCcEEEEEcCCCCEEEEec-----------------------------CCCCCcceeeeeccccC--
Confidence 22344443 355555432 222210 00000000000000000
Q ss_pred ccccccccccCCCc-CccccccCCCCCCCccCCcccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCC---
Q 004015 208 KLSQYCSEFLPDSQ-NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSG--- 280 (779)
Q Consensus 208 ~ls~y~~~l~p~~~-~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG--- 280 (779)
.+. +-...|+.. +.......+.... ....++++..||.|+|||+... +++..|.+|..+|.+|+|+|++
T Consensus 152 ~v~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 152 GCN--AVSWAPAVVPGSLIDHPSGQKPN--YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp CBC--CCEECCCCCC------CCSCCCC--CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCS
T ss_pred Ccc--eEEEccccCCccccccccccCcc--ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCC
Confidence 000 000001100 0000000000000 0124677889999999999765 4778899999999999999997
Q ss_pred -CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 281 -ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 281 -~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+||+|+.||+ |+||++.....+. .....+. ++ ...|++++|+||+++||+++.||+|+||++...
T Consensus 228 ~~~las~s~D~~-v~iw~~~~~~~~~-------~~~~~~~----~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 228 TSTIASCSQDGR-VFIWTCDDASSNT-------WSPKLLH----KF-NDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp CCEEEEEETTCE-EEEEECSSTTCCC-------CBCCEEE----EC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred CceEEEEcCCCe-EEEEEccCccccc-------hhhhhhh----cC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 89999999997 8999987531000 0011121 22 345999999999999999999999999998754
Q ss_pred C
Q 004015 360 G 360 (779)
Q Consensus 360 g 360 (779)
+
T Consensus 295 g 295 (316)
T 3bg1_A 295 G 295 (316)
T ss_dssp S
T ss_pred C
Confidence 4
No 33
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.80 E-value=6.2e-18 Score=176.99 Aligned_cols=109 Identities=10% Similarity=0.158 Sum_probs=90.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.+..||.|+|||+.+++.+..|++|...|.+|+|+|++++||||+.||+ |+|||+..+ ......+
T Consensus 72 s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~-------------~~~~~~~- 136 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT-VKLWNWENN-------------WALEQTF- 136 (304)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEEGGGT-------------TEEEEEE-
T ss_pred EECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe-EEEEECCCC-------------cchhhhh-
Confidence 3456899999999999999999999999999999999999999999998 899998764 1122223
Q ss_pred cCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 323 RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 323 rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.++. ..|.+++|+| |+.+||+++.|++|+|||+........+..
T Consensus 137 ~~h~-~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~ 181 (304)
T 2ynn_A 137 EGHE-HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (304)
T ss_dssp CCCC-SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred cccC-CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc
Confidence 4443 4599999999 789999999999999999987665555543
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.80 E-value=1.5e-17 Score=175.51 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=138.0
Q ss_pred CCEEEEEECCC-----CcEEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRS-----QSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~T-----ge~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
.++|++||+.+ +..+++++. ...|.+++|+ +++|+ .+.|++|++||+.+++++.++..|...
T Consensus 39 D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~--------- 109 (319)
T 3frx_A 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD--------- 109 (319)
T ss_dssp TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------
T ss_pred CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc---------
Confidence 37899999864 345667764 6789999996 55555 478999999999999999998876321
Q ss_pred cccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 134 ~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
.. .+++.. ++.
T Consensus 110 ---v~-------~~~~~~---------------------------~~~-------------------------------- 120 (319)
T 3frx_A 110 ---VM-------SVDIDK---------------------------KAS-------------------------------- 120 (319)
T ss_dssp ---EE-------EEEECT---------------------------TSC--------------------------------
T ss_pred ---EE-------EEEEcC---------------------------CCC--------------------------------
Confidence 01 122210 111
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC------CCEEEEEe
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS------GILLVTAS 287 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd------G~lLATaS 287 (779)
.++++..||.|+|||+. +.++..+.+|...|.+++|+|. +.+|++++
T Consensus 121 --------------------------~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 121 --------------------------MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp --------------------------EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred --------------------------EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 12345678999999997 4678899999999999999995 55999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.||+ |++||+... .....+ .++ ...|.+++|+||+++||+++.||+|+|||+........+..
T Consensus 174 ~d~~-i~~wd~~~~--------------~~~~~~-~~h-~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 174 NDKM-VKAWNLNQF--------------QIEADF-IGH-NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp TTSC-EEEEETTTT--------------EEEEEE-CCC-CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred CCCE-EEEEECCcc--------------hhheee-cCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 9998 899999864 333344 343 34599999999999999999999999999987655545543
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-17 Score=177.52 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=84.2
Q ss_pred cccCCCCeEEEEECCC----CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVS----KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s----~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+++..||.|+|||+.. .+++..+.+|...|.+|+|+|+|.+||||+.||+ |+|||+... ....
T Consensus 123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~iW~~~~~------------~~~~ 189 (330)
T 2hes_X 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT-VRIWKDYDD------------DWEC 189 (330)
T ss_dssp EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC-EEEEEEETT------------EEEE
T ss_pred EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCC------------CeeE
Confidence 3456789999999943 3577889999999999999999999999999998 899998653 1233
Q ss_pred EEEeecCCCcccEEEEEEcCC--CCEEEEEeCCCeEEEEecCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDD--SNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpD--g~~LAtgS~DGTVhIwdl~~~ 359 (779)
+..+ .|+. ..|++++|+|+ +.+|++++.|++|+||++...
T Consensus 190 ~~~~-~~h~-~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 190 VAVL-NGHE-GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EEEE-CCCS-SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred EEEc-cCCC-CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 4444 4543 45999999999 789999999999999999653
No 36
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.79 E-value=3e-17 Score=178.27 Aligned_cols=175 Identities=16% Similarity=0.243 Sum_probs=131.4
Q ss_pred CEEEEEECCCCcEEEEEeCCC-------------------CEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecC
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS-------------------PIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 121 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s-------------------~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~ 121 (779)
.+++||++.+|+.+..+.... .|.+|+|+ +++|++ +.++.|++||+.+++.+.++..|
T Consensus 85 ~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 164 (393)
T 1erj_A 85 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 164 (393)
T ss_dssp SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC
Confidence 579999999999998886422 38999996 566665 67899999999999998888766
Q ss_pred CcccCCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeec
Q 004015 122 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 201 (779)
Q Consensus 122 p~~~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~l 201 (779)
... + ..+++.. ++.
T Consensus 165 ~~~---------------v----~~~~~~p---------------------------~~~-------------------- 178 (393)
T 1erj_A 165 EQD---------------I----YSLDYFP---------------------------SGD-------------------- 178 (393)
T ss_dssp SSC---------------E----EEEEECT---------------------------TSS--------------------
T ss_pred CCC---------------E----EEEEEcC---------------------------CCC--------------------
Confidence 321 1 0122220 111
Q ss_pred CCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CC
Q 004015 202 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SG 280 (779)
Q Consensus 202 Gd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG 280 (779)
.++++..||.|+|||+.+++++..+. |...|.+++|+| +|
T Consensus 179 --------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 179 --------------------------------------KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp --------------------------------------EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred --------------------------------------EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 12334568999999999998887776 567899999999 99
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee------cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ------RGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~------rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
++||+++.||+ |+|||+..+ ..+..+. .++ ...|.+++|+||+++|++++.||+|+||
T Consensus 220 ~~l~~~s~d~~-v~iwd~~~~--------------~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 220 KYIAAGSLDRA-VRVWDSETG--------------FLVERLDSENESGTGH-KDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp CEEEEEETTSC-EEEEETTTC--------------CEEEEEC------CCC-SSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CEEEEEcCCCc-EEEEECCCC--------------cEEEeecccccCCCCC-CCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 99999999998 899999865 2222221 232 3459999999999999999999999999
Q ss_pred ecCCC
Q 004015 355 AINPL 359 (779)
Q Consensus 355 dl~~~ 359 (779)
|+...
T Consensus 284 d~~~~ 288 (393)
T 1erj_A 284 NLQNA 288 (393)
T ss_dssp EC---
T ss_pred ECCCC
Confidence 99764
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.79 E-value=6.5e-18 Score=181.59 Aligned_cols=186 Identities=11% Similarity=0.132 Sum_probs=139.4
Q ss_pred CEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tL-kf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+..+ .+...|.+|+|+ +++|++ +.+++|++||+.+++++.++..|... ..
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~------------v~- 185 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT------------VT- 185 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC------------EE-
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc------------EE-
Confidence 67999999999998886 467899999996 556655 67899999999999988888765321 11
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+++.. ++.
T Consensus 186 ------~~~~~~---------------------------~~~-------------------------------------- 194 (420)
T 3vl1_A 186 ------DIAIID---------------------------RGR-------------------------------------- 194 (420)
T ss_dssp ------EEEEET---------------------------TTT--------------------------------------
T ss_pred ------EEEEcC---------------------------CCC--------------------------------------
Confidence 122221 111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC---C---------------------CCeEEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH---K---------------------SPISALC 275 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH---t---------------------~~IsaLa 275 (779)
.++.+..+|.|+|||+.+++++..+..| . .+|.+++
T Consensus 195 --------------------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 195 --------------------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp --------------------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred --------------------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 1223456789999999999999988853 3 4444455
Q ss_pred EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 004015 276 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLF 354 (779)
Q Consensus 276 FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIw 354 (779)
|+|+|++|++++.||+ |+|||+..+ ..+..+..++ ...|.+++|+|+++ +|++++.||+|+||
T Consensus 255 ~s~~~~~l~~~~~dg~-i~i~d~~~~--------------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGV-ITVHNVFSK--------------EQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp SSCTTEEEEEEETTSC-EEEEETTTC--------------CEEEEECCTT-SSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EcCCCCEEEEEcCCCe-EEEEECCCC--------------ceeEEccccc-CCCceeEEEeCCCCCEEEEEeCCCeEEEE
Confidence 6899999999999998 899999875 3444554433 34699999999999 99999999999999
Q ss_pred ecCCCCC-ceeeccCC
Q 004015 355 AINPLGG-SVNFQPTD 369 (779)
Q Consensus 355 dl~~~gg-~~~~~~H~ 369 (779)
|+..... ...+..|.
T Consensus 319 d~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 319 DLRSPECPVGEFLINE 334 (420)
T ss_dssp ETTCTTSCSEEEEEST
T ss_pred EcCCCcCchhhhhccC
Confidence 9988755 44566643
No 38
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.79 E-value=3e-17 Score=184.24 Aligned_cols=222 Identities=18% Similarity=0.258 Sum_probs=149.1
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+.+. .+..+. +...|.+++|+ +++|++ +.++.|++||. +++.+.++..|... ..
T Consensus 324 d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~------------v~ 389 (577)
T 2ymu_A 324 DKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS------------VR 389 (577)
T ss_dssp TSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC------------EE
T ss_pred CCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC------------eE
Confidence 367999998655 455555 47889999996 566666 56789999995 67788888776421 23
Q ss_pred ceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 139 piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.++++| ++||.++.+ +.+|+. .+..+.. + .++.. .+.. -
T Consensus 390 ~~~~s~dg~~l~~~~~d~~v~~~~~-------------------~~~~~~~------------~--~~~~~--~v~~--~ 432 (577)
T 2ymu_A 390 GVAFSPDGQTIASASDDKTVKLWNR-------------------NGQLLQT------------L--TGHSS--SVWG--V 432 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-------------------TCCEEEE------------E--ECCSS--CEEE--E
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC-------------------CCCEEEE------------e--cCCCC--CeEE--E
Confidence 355554 677766432 222221 0010000 0 00000 0000 0
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
...|++ ..++.+..+|.|++||+ +++.+..+.+|..+|.+|+|+|||++||+++.||+ |+
T Consensus 433 ~~s~d~------------------~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~ 492 (577)
T 2ymu_A 433 AFSPDD------------------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VK 492 (577)
T ss_dssp EECTTS------------------SEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EE
T ss_pred EECCCC------------------CEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EE
Confidence 001111 13556678999999996 56788899999999999999999999999999987 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
|||.. + ..+..+ .++ ...|.+|+||||+++||+++.||+|+|||+ +......+.+|...+.
T Consensus 493 iw~~~-~--------------~~~~~~-~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~ 553 (577)
T 2ymu_A 493 LWNRN-G--------------QLLQTL-TGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 553 (577)
T ss_dssp EEETT-S--------------CEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred EEcCC-C--------------CEEEEE-eCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEE
Confidence 99953 2 233444 343 345999999999999999999999999996 4445567788865443
No 39
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.79 E-value=1.1e-17 Score=187.84 Aligned_cols=168 Identities=19% Similarity=0.311 Sum_probs=129.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||. +++.++++.. ...|.+|+|+ +++|++ +.+++|++||+ +.+++.++..|...
T Consensus 406 d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~-------------- 469 (577)
T 2ymu_A 406 DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS-------------- 469 (577)
T ss_dssp TSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSC--------------
T ss_pred CCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCC--------------
Confidence 478999995 6788888874 7889999996 556665 67889999996 56777777665321
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+ ..+++.. +|.+
T Consensus 470 -v----~~~~~sp---------------------------d~~~------------------------------------ 481 (577)
T 2ymu_A 470 -V----RGVAFSP---------------------------DGQT------------------------------------ 481 (577)
T ss_dssp -E----EEEEECT---------------------------TSCE------------------------------------
T ss_pred -E----EEEEEcC---------------------------CCCE------------------------------------
Confidence 1 1123321 1211
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
++.+..+|.|+|||. +++++..+.+|..+|++|+|+|||++||+++.||+ |+|||.
T Consensus 482 ----------------------las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~ 537 (577)
T 2ymu_A 482 ----------------------IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR 537 (577)
T ss_dssp ----------------------EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECT
T ss_pred ----------------------EEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeC
Confidence 223356789999995 67889999999999999999999999999999987 999995
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
. + ..+..+ +|+. ..|++++|+|||++|++++.|++|+|||
T Consensus 538 ~-~--------------~~~~~~-~~h~-~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 N-G--------------QLLQTL-TGHS-SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp T-S--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred C-C--------------CEEEEE-cCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 3 2 234454 4543 4699999999999999999999999997
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.79 E-value=3.1e-17 Score=170.43 Aligned_cols=189 Identities=15% Similarity=0.240 Sum_probs=140.6
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+++++++.+++. ...|..+.|+ +++|++ +.+++|++||+.+++++.++..|..
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------------- 150 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------- 150 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS---------------
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC---------------
Confidence 37899999999999999985 6789999996 455554 7789999999999999888865421
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
++. .+++.. ++.
T Consensus 151 ~v~----~~~~~~---------------------------~~~------------------------------------- 162 (312)
T 4ery_A 151 PVS----AVHFNR---------------------------DGS------------------------------------- 162 (312)
T ss_dssp CEE----EEEECT---------------------------TSS-------------------------------------
T ss_pred cEE----EEEEcC---------------------------CCC-------------------------------------
Confidence 110 122220 111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.++.+..+|.|+|||+.+++.+..+. .|..+|.+++|+|+|++|++++.||. |+|||
T Consensus 163 ---------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd 220 (312)
T 4ery_A 163 ---------------------LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWD 220 (312)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEE
T ss_pred ---------------------EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEE
Confidence 12234567899999999999888775 66778999999999999999999987 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCccc--EEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAV--IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~--I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
+..+ ..+..+ .++.... +....+.+++++|++++.||+|+||++........+++|.+.
T Consensus 221 ~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 221 YSKG--------------KCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281 (312)
T ss_dssp TTTT--------------EEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCCC--------------cEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence 9875 333343 2322211 333334578999999999999999999987766677888544
No 41
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-17 Score=175.40 Aligned_cols=234 Identities=12% Similarity=0.117 Sum_probs=143.8
Q ss_pred CEEEEEECC--CCcEEEEEe-CCCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~--Tge~V~tLk-f~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+. +++.++.+. +...|.+|+|+ +++|++ +.++.|++||+.+.+ .+..+..+..
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------- 102 (379)
T 3jrp_A 33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA---------- 102 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS----------
T ss_pred CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc----------
Confidence 569999998 667777776 47899999995 566665 678999999999987 5566654432
Q ss_pred cccccceeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 134 GIGYGPLAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 134 ~~~~~piAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
....+++.| ++|+.++.+ +.+|+.. ..+... -....+...
T Consensus 103 --~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~-----------------------------~~~~~~-~~~~~~~~~-- 148 (379)
T 3jrp_A 103 --SVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-----------------------------ENGTTS-PIIIDAHAI-- 148 (379)
T ss_dssp --CEEEEEECCGGGCSEEEEEETTSEEEEEECC-----------------------------TTSCCC-EEEEECCTT--
T ss_pred --ceEEEEeCCCCCCCEEEEecCCCcEEEEecC-----------------------------CCCcee-eEEecCCCC--
Confidence 122344443 355555432 2223211 000000 000000000
Q ss_pred ccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCC---C
Q 004015 208 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPS---G 280 (779)
Q Consensus 208 ~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPd---G 280 (779)
.+... ...|............ .+ ...++.+..+|.|+|||+.++. ++..+.+|..+|.+|+|+|+ |
T Consensus 149 ~v~~~--~~~~~~~~~~~~~~~~--~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 149 GVNSA--SWAPATIEEDGEHNGT--KE---SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp CEEEE--EECCCC------------CT---TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred ceEEE--EEcCccccccccccCC--CC---CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 00000 0001000000000000 00 1245667789999999998754 56788899999999999999 9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
++||+++.||+ |+|||+..+.. ......+........|.+++|+||+++|++++.||+|+||++...+
T Consensus 222 ~~l~s~~~dg~-i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 222 SYLASVSQDRT-CIIWTQDNEQG-----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEEETTSC-EEEEEESSTTS-----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CeEEEEeCCCE-EEEEeCCCCCc-----------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999999998 89999986410 0111122222233459999999999999999999999999998654
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1.1e-18 Score=185.40 Aligned_cols=125 Identities=10% Similarity=0.118 Sum_probs=88.0
Q ss_pred cccCCCCeEEEEECCCCc---EEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCc---cCCC-C
Q 004015 242 PDADNVGMVIVRDIVSKN---VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA---CDAG-T 313 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~---~v~~f~a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~---~~~~-~ 313 (779)
+.+..+|.|+|||+.+++ ++..+.. |...|.+|+|+|+|++||+++.||+ |+|||+.......... .+.. .
T Consensus 116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~ 194 (377)
T 3dwl_C 116 AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLP 194 (377)
T ss_dssp EEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred EEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEEEecccCCCccccccccccc
Confidence 345568899999999887 4788887 9999999999999999999999998 8999986421000000 0000 0
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC----ceeeccCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG----SVNFQPTDA 370 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg----~~~~~~H~~ 370 (779)
....+..+ + +...|.+++|+||+++||+++.||+|+|||+..... ...+..|..
T Consensus 195 ~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 195 FNTVCAEY--P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252 (377)
T ss_dssp EEEEEECC--C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS
T ss_pred hhhhhhcc--c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC
Confidence 12233333 3 234599999999999999999999999999998766 455666644
No 43
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.78 E-value=7.4e-17 Score=165.25 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=90.3
Q ss_pred cccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCC----CEEEEEeCCCCEEEEEeCCCCCCCCCC------
Q 004015 240 HFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSS------ 307 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG----~lLATaS~DGt~I~Vwdi~~~~~g~~s------ 307 (779)
.++.+..+|.+.+|+...+.. +..+.+|..+|++|+|+|+| ++|++++.||+ |+|||+.........
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 262 (351)
T 3f3f_A 184 KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTN 262 (351)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-----------
T ss_pred EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccc
Confidence 355667888998888887765 78888999999999999999 89999999998 899998763100000
Q ss_pred -------------ccC-------------CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 308 -------------ACD-------------AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 308 -------------~~~-------------~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..+ .......+..+ +++ ...|.+++|+||+++||+++.||+|+||++...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ----------------------------CCSEEEEEEEEE-CTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred eeccCCCcccccccccccccccceeeeecccccccEEEEE-ecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 000 00011233333 343 34599999999999999999999999999988765
Q ss_pred ceee
Q 004015 362 SVNF 365 (779)
Q Consensus 362 ~~~~ 365 (779)
...+
T Consensus 341 ~~~~ 344 (351)
T 3f3f_A 341 FKCM 344 (351)
T ss_dssp EEEE
T ss_pred hhhe
Confidence 5444
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.77 E-value=6.3e-17 Score=175.35 Aligned_cols=227 Identities=14% Similarity=0.165 Sum_probs=153.8
Q ss_pred CCEEEEEECCCCcEEEEEeC--CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf--~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|+|||+.+++.+..+.. ...|.+|+|+ +++|++ +.++.|++||+.+++.+.++..|... .
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------v 179 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------V 179 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------E
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc------------e
Confidence 47899999999999998886 6789999996 566666 56899999999999999999766421 2
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
..+++.+++|+.++.+- .+..|-....+....- ..++.+ .+... ..
T Consensus 180 ~~~~~~~~~l~~~~~dg---------------------------~i~i~d~~~~~~~~~~--~~~~~~--~v~~~--~~- 225 (401)
T 4aez_A 180 GCLSWNRHVLSSGSRSG---------------------------AIHHHDVRIANHQIGT--LQGHSS--EVCGL--AW- 225 (401)
T ss_dssp EEEEEETTEEEEEETTS---------------------------EEEEEETTSSSCEEEE--EECCSS--CEEEE--EE-
T ss_pred EEEEECCCEEEEEcCCC---------------------------CEEEEecccCcceeeE--EcCCCC--CeeEE--EE-
Confidence 33555666666664321 1111111100000000 000000 00000 00
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC-CEEEEEe--CCCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTAS--VQGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS--~DGt~I~ 294 (779)
++. ...++.+..+|.|+|||+.+++++..+..|..+|.+++|+|+| .+|++++ .||+ |+
T Consensus 226 ----------~~~-------~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~ 287 (401)
T 4aez_A 226 ----------RSD-------GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IH 287 (401)
T ss_dssp ----------CTT-------SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EE
T ss_pred ----------cCC-------CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EE
Confidence 010 1135667789999999999999999999999999999999976 5777765 6886 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe--CCCeEEEEecCCCCCcee--eccCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVN--FQPTDA 370 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS--~DGTVhIwdl~~~gg~~~--~~~H~~ 370 (779)
+||+..+ ..+..+.. ...|.+++|+||+++|++++ .||+|+||++........ +.+|..
T Consensus 288 i~d~~~~--------------~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~ 350 (401)
T 4aez_A 288 FWNAATG--------------ARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT 350 (401)
T ss_dssp EEETTTC--------------CEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS
T ss_pred EEECCCC--------------CEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC
Confidence 9999875 33444432 24599999999999999954 899999999987433332 456643
No 45
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.77 E-value=3e-17 Score=179.80 Aligned_cols=235 Identities=13% Similarity=0.179 Sum_probs=152.9
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.++|++||+.+++.++++. +...|.+++|+ +.+++++.+++|++||+.+++++.++..|... ...
T Consensus 141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~------------v~~ 208 (464)
T 3v7d_B 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST------------VRC 208 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------EEE
T ss_pred CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCc------------cEE
Confidence 3779999999999999998 57899999996 33445578999999999999999999776432 122
Q ss_pred eeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 140 LAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 140 iAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
+++.+ .+|+.++.+ +.+|+........... ............+. . .++
T Consensus 209 l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~-~------------------~~~ 262 (464)
T 3v7d_B 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG-------EEHDYPLVFHTPEE-N------------------PYF 262 (464)
T ss_dssp EEEEESSSCEEEEEEETTSCEEEEECCCCCCC-------------CCSSEEESCGGG-C------------------TTE
T ss_pred EEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc-------ccCCcceEeeccCC-C------------------eEE
Confidence 33331 556655432 3344321100000000 00000000000000 0 000
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
..........+....+. ...++.+..+|.|++||+.+++++..+.+|...|.+++|+|+|++|++++.||+ |
T Consensus 263 ~~~~~~~~~~v~~~~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i 334 (464)
T 3v7d_B 263 VGVLRGHMASVRTVSGH-------GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-I 334 (464)
T ss_dssp EEEECCCSSCEEEEEEE-------TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-E
T ss_pred EEEccCccceEEEEcCC-------CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-E
Confidence 00000000000000000 124567788999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
+|||+.++ ..+..+. ++ ...|.+++|+ +++|++++.||+|+|||+.....
T Consensus 335 ~vwd~~~~--------------~~~~~~~-~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 335 RIWDLENG--------------ELMYTLQ-GH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp EEEETTTT--------------EEEEEEC-CC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEECCCC--------------cEEEEEe-CC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence 99999875 4455553 33 3459999998 58999999999999999987543
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.4e-17 Score=172.71 Aligned_cols=116 Identities=12% Similarity=0.158 Sum_probs=85.4
Q ss_pred ccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 243 DADNVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 243 s~~~dG~V~VwDl~s-------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
++..||.|+|||+.. .+++..+.+|..+|.+|+|+|+|++||||+.||+ |+|||+... + ...
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~-v~iwd~~~~--~--------~~~ 143 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS-VWIWETDES--G--------EEY 143 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC-EEEEECCTT--C--------CCC
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE-EEEEeccCC--C--------CCe
Confidence 445689999999853 4577889999999999999999999999999998 899999542 0 012
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC--CCceeeccCCCC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL--GGSVNFQPTDAN 371 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~--gg~~~~~~H~~~ 371 (779)
..+..+ .++ ...|.+++|+||+++||+++.|++|+||++... .....+.+|...
T Consensus 144 ~~~~~~-~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~ 199 (330)
T 2hes_X 144 ECISVL-QEH-SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199 (330)
T ss_dssp EEEEEE-CCC-SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred EEEEEe-ccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc
Confidence 333444 343 345999999999999999999999999998654 234456777543
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.8e-17 Score=174.67 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=153.9
Q ss_pred CEEEEEECCCCc---EEEEEeCCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCC----CcEEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLRSQS---YVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT----LEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~Tge---~V~tLkf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T----~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+.+++ .+..+.+...|.+|+|+ +++|++ +.++.|++||+.+ .+.+.++..|...
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~--------- 115 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS--------- 115 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC---------
T ss_pred CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc---------
Confidence 679999999986 56667778899999995 556665 5788999999998 4577777665321
Q ss_pred cccccceeecC---ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccc
Q 004015 134 GIGYGPLAVGP---RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKK 208 (779)
Q Consensus 134 ~~~~~piAlgp---RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ 208 (779)
...+++.| ++|+.++.+ +.+|+....... .... .. ..+..
T Consensus 116 ---v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------------~~~~---------~~----~~~~~----- 160 (416)
T 2pm9_A 116 ---VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES--------------PSNY---------TP----LTPGQ----- 160 (416)
T ss_dssp ---CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSC--------------TTTC---------CC----BCCCC-----
T ss_pred ---eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccc--------------cccc---------cc----ccccc-----
Confidence 22344443 456655432 223321100000 0000 00 00000
Q ss_pred cccccccccCCCcCccccc--cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCCC
Q 004015 209 LSQYCSEFLPDSQNSLQSA--IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPSG 280 (779)
Q Consensus 209 ls~y~~~l~p~~~~si~sa--~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH------t~~IsaLaFSPdG 280 (779)
.......+... ++.. ...++.+..+|.|+|||+.+++.+..+..| ..+|.+++|+|+|
T Consensus 161 --------~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 161 --------SMSSVDEVISLAWNQSL------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp --------SCCSSCCCCEEEECSSC------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred --------ccCCCCCeeEEEeCCCC------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 00000000000 1100 013566778999999999999999999877 7899999999998
Q ss_pred -CEEEEEeCCC---CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 004015 281 -ILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 281 -~lLATaS~DG---t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwd 355 (779)
.+|++++.|| + |+|||+.... ..+..+..++ ...|.+++|+| |+++|++++.||+|+|||
T Consensus 227 ~~~l~~~~~d~~~~~-i~~~d~~~~~-------------~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 227 STRVATATGSDNDPS-ILIWDLRNAN-------------TPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp TTEEEEEECCSSSCC-CCEEETTSTT-------------SCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred CCEEEEEECCCCCce-EEEEeCCCCC-------------CCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 6999999998 7 8999998640 1111221132 34599999999 999999999999999999
Q ss_pred cCCCCCceeeccCCCCC
Q 004015 356 INPLGGSVNFQPTDANF 372 (779)
Q Consensus 356 l~~~gg~~~~~~H~~~~ 372 (779)
+........+..|...+
T Consensus 292 ~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 292 PESAEQLSQFPARGNWC 308 (416)
T ss_dssp SSSCCEEEEEECSSSCC
T ss_pred CCCCccceeecCCCCce
Confidence 99887777778886443
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.6e-17 Score=176.57 Aligned_cols=226 Identities=13% Similarity=0.114 Sum_probs=147.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCC-C---------------EEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRS-P---------------IYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIV 124 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s-~---------------V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~ 124 (779)
.++|++||+.+++.+..+.... . |.++.|+ +.+++.+.++.|++||+.+.+.+..+..+...
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 249 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP 249 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC
T ss_pred CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc
Confidence 3679999999999999998743 3 8888885 55566678899999999999988888765321
Q ss_pred cCCCCCCCccccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeee
Q 004015 125 MGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 200 (779)
Q Consensus 125 ~~~p~s~~~~~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~ 200 (779)
...+++.+ ++|+.++.+ +.+|+.. ..+.+. -+
T Consensus 250 ------------i~~~~~~~~~~~l~~~~~d~~i~i~d~~-----------------------------~~~~~~-~~-- 285 (425)
T 1r5m_A 250 ------------ISVLEFNDTNKLLLSASDDGTLRIWHGG-----------------------------NGNSQN-CF-- 285 (425)
T ss_dssp ------------EEEEEEETTTTEEEEEETTSCEEEECSS-----------------------------SBSCSE-EE--
T ss_pred ------------eEEEEECCCCCEEEEEcCCCEEEEEECC-----------------------------CCccce-Ee--
Confidence 22344443 556655422 2222210 000000 00
Q ss_pred cCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 004015 201 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 201 lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG 280 (779)
.+.. ..+...... ..+ .++.+..+|.|+|||+.+++++..+..|..+|.+++|+|+|
T Consensus 286 ~~~~-----------------~~i~~~~~~--~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 286 YGHS-----------------QSIVSASWV--GDD----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342 (425)
T ss_dssp CCCS-----------------SCEEEEEEE--TTT----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred cCCC-----------------ccEEEEEEC--CCC----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence 0000 000000000 001 34566788999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCC------CceeEEEEeecCCCcc-cEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAG------TSYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~------~s~~~l~~l~rG~t~a-~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
++||+++.||. |+|||+.............. .....+..+ +++... .|.+++|+||+++||+++.||+|+|
T Consensus 343 ~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 343 QKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp SEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 99999999998 89999976410000000000 000134444 343333 6999999999999999999999999
Q ss_pred EecC
Q 004015 354 FAIN 357 (779)
Q Consensus 354 wdl~ 357 (779)
|++.
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9985
No 49
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.77 E-value=5.8e-18 Score=182.24 Aligned_cols=116 Identities=14% Similarity=0.201 Sum_probs=93.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+++..+|.|+|||+.+++++..|++|...|.+|+|+|++. +|++++.||+ |+|||+..+. .+..
T Consensus 155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~-v~~wd~~~~~--------------~~~~ 219 (357)
T 4g56_B 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWDTRKPK--------------PATR 219 (357)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC-EEECCTTSSS--------------CBCB
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc-eEEEECCCCc--------------eeee
Confidence 3456789999999999999999999999999999999985 8999999998 8999998751 1111
Q ss_pred eecCCCcccEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 321 LQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpD-g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
+........|.+++|+|+ +++||+|+.|++|+|||+........+..|...+
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v 272 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI 272 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence 111222345899999998 5689999999999999999887777788775443
No 50
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.77 E-value=8e-17 Score=176.44 Aligned_cols=211 Identities=15% Similarity=0.220 Sum_probs=148.9
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
++|++||+.+++.+.++. +...|.++++++++|++ +.+++|++||+.+++++.++..|... ...++
T Consensus 153 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~------------v~~l~ 220 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA------------VLHLR 220 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC------------EEEEE
T ss_pred CeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc------------EEEEE
Confidence 679999999999999997 47899999998777776 67899999999999999999776321 22345
Q ss_pred ecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 142 VGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 142 lgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+.+..|+.++.+ +.+|+.. ..+.+..-....++..
T Consensus 221 ~~~~~l~s~s~dg~i~vwd~~-----------------------------~~~~~~~~~~~~~~~~-------------- 257 (435)
T 1p22_A 221 FNNGMMVTCSKDRSIAVWDMA-----------------------------SPTDITLRRVLVGHRA-------------- 257 (435)
T ss_dssp CCTTEEEEEETTSCEEEEECS-----------------------------SSSCCEEEEEECCCSS--------------
T ss_pred EcCCEEEEeeCCCcEEEEeCC-----------------------------CCCCceeeeEecCCCC--------------
Confidence 555566655432 2222210 0000000000000000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.+...... ...++.+..+|.|+|||+.+++++..+.+|...|.+++| ++.+|++|+.||+ |+|||+.
T Consensus 258 ---~v~~~~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~ 324 (435)
T 1p22_A 258 ---AVNVVDFD-------DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIE 324 (435)
T ss_dssp ---CEEEEEEE-------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETT
T ss_pred ---cEEEEEeC-------CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECC
Confidence 00000000 123566778999999999999999999999999999999 5789999999998 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
++ ..+..+. ++ ...|.+++| |+++|++|+.||+|+|||+....
T Consensus 325 ~~--------------~~~~~~~-~h-~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 325 CG--------------ACLRVLE-GH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp TC--------------CEEEEEC-CC-SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred CC--------------CEEEEEe-CC-cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 75 3444553 33 345999999 89999999999999999996543
No 51
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.76 E-value=8.3e-17 Score=171.29 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=93.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEecc---C---CCCeEEEEEcCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCccC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRA---H---KSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~a---H---t~~IsaLaFSPdG~lLATaS~D---Gt~I~Vwdi~~~~~g~~s~~~ 310 (779)
.++.+..+|.|+|||+.+++++..+.. | ..+|.+++|+|+|++|++++.| |. |+|||+..+
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~--------- 268 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFG--------- 268 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-EEEEETTTC---------
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-EEEEECCCC---------
Confidence 356677899999999999999999999 9 9999999999999999999999 86 999999865
Q ss_pred CCCceeEEEEeecCC-----------CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 311 AGTSYVHLYRLQRGL-----------TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~-----------t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
..+..+.... +...|.+++|+||+++|++++.||+|+||++........+.
T Consensus 269 -----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 269 -----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp -----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred -----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 2334442200 23459999999999999999999999999998876666666
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.76 E-value=1.5e-16 Score=164.03 Aligned_cols=107 Identities=14% Similarity=0.310 Sum_probs=90.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..+|.|++||+.+++.+..+..|...|.+++|+|+|++|++++.||+ |++||+..+ ..+..+.
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~--------------~~~~~~~- 222 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREG--------------RQLQQHD- 222 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTT--------------EEEEEEE-
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCC--------------ceEeeec-
Confidence 346789999999999999999999999999999999999999999987 899999875 3333332
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
....|.+++|+||+++|++++.|+++++|++... ....+..|.
T Consensus 223 --~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~ 265 (337)
T 1gxr_A 223 --FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLHE 265 (337)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CEEEECCCS
T ss_pred --CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-CeEEEcCCc
Confidence 2345999999999999999999999999999875 344555554
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.76 E-value=9.2e-17 Score=187.20 Aligned_cols=225 Identities=15% Similarity=0.222 Sum_probs=150.6
Q ss_pred CCEEEEEECCCC-----cEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRSQ-----SYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~Tg-----e~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
.++|+|||+.++ ...+.+. +...|.+|+|+ +++|++ +.|++|++||+.+++++.++..|...
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~--------- 474 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD--------- 474 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC---------
Confidence 378999999763 3455565 46789999996 566655 67999999999999999999887432
Q ss_pred cccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 134 GIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 134 ~~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
+..++++| ++|+.++.+ +.+|+.... .. ..+..+ ..++.. .+
T Consensus 475 ---v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-------------------~~--------~~~~~~--~~~h~~--~v 520 (694)
T 3dm0_A 475 ---VLSVAFSLDNRQIVSASRDRTIKLWNTLGE-------------------CK--------YTISEG--GEGHRD--WV 520 (694)
T ss_dssp ---EEEEEECTTSSCEEEEETTSCEEEECTTSC-------------------EE--------EEECSS--TTSCSS--CE
T ss_pred ---EEEEEEeCCCCEEEEEeCCCEEEEEECCCC-------------------cc--------eeeccC--CCCCCC--cE
Confidence 22344444 556655432 233321000 00 000000 000000 00
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
. +-...|++ ....+++++.||.|+|||+.+.+++..+.+|.+.|++|+|+|+|++|+|++.|
T Consensus 521 ~--~~~~~~~~----------------~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 521 S--CVRFSPNT----------------LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp E--EEEECSCS----------------SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred E--EEEEeCCC----------------CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 0 00000110 00135667889999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|+ |+|||+..+ ..++.+.. ...|.+++||||+.+|++++ |+.|+|||+........+..
T Consensus 583 g~-i~iwd~~~~--------------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 583 GV-VLLWDLAEG--------------KKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp SB-CEEEETTTT--------------EEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECC
T ss_pred Ce-EEEEECCCC--------------ceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcc
Confidence 98 899999875 44555432 24599999999999988776 56699999987654444443
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.5e-17 Score=180.79 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=96.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~a--Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
++.+..+|.|+|||+.+++++..+.+ |...|++|+|+|+|++|++|+.||+ |+|||+..+ ..+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~ 249 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFN--------------VLI 249 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTT--------------EEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCc--------------cEE
Confidence 34566789999999999999999998 8999999999999999999999998 899999875 444
Q ss_pred EEeecCCCcccEEEEEE----cCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 319 YRLQRGLTNAVIQDISF----SDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaF----SpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
..+..++ ...|.+++| +||+++|++++.||+|+|||+........+.+|...+
T Consensus 250 ~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 250 RSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp EEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred EEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 5553232 246999955 5678999999999999999999887777888875433
No 55
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.76 E-value=5e-17 Score=177.37 Aligned_cols=187 Identities=9% Similarity=0.023 Sum_probs=125.7
Q ss_pred CCEEEEEEC-CCCcEEEEEeC-CCCEEEEEEc-----CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 63 PTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCS-----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 63 ~~tVrIWDL-~Tge~V~tLkf-~s~V~sV~~s-----~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
..+|++|++ .+|+.+.++.. ...+..++|+ +.+||. +.|++|+|||+.|+++++++.++.....
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~-------- 227 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA-------- 227 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C--------
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee--------
Confidence 478999999 55888888765 4456555554 366665 7899999999999999999986532100
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.. ..+||.. +|.++.....+.
T Consensus 228 -~v-------~~vafSp---------------------------dG~~lvs~s~~~------------------------ 248 (356)
T 2w18_A 228 -SV-------CHKAYSE---------------------------MGLLFIVLSHPC------------------------ 248 (356)
T ss_dssp -CC-------EEEEEEE---------------------------TTEEEEEEC---------------------------
T ss_pred -ee-------EEEEECC---------------------------CCCEEEEeccCC------------------------
Confidence 01 1223331 222211100000
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-----ccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-----RAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-----~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
+ ...++++..|++|++||..+++.+..+ .+|...+.+..|+ |.++|+++.|
T Consensus 249 --------------------~--~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~D 304 (356)
T 2w18_A 249 --------------------A--KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTS 304 (356)
T ss_dssp -------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETT
T ss_pred --------------------C--cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCC
Confidence 0 002345677899999999999988766 3787776555554 9999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
|+ |+|||+.++ +.+.+| .|+....+..++|||||++||+|+.|+||+|||+
T Consensus 305 gT-IkIWDl~tG--------------k~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 305 GT-IAIWDLLLG--------------QCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SC-EEEEETTTC--------------SEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred Cc-EEEEECCCC--------------cEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 98 999999876 455566 3544434556999999999999999999999996
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.76 E-value=4.7e-17 Score=169.78 Aligned_cols=134 Identities=12% Similarity=0.239 Sum_probs=103.6
Q ss_pred CEEEEEECCCCcEEEEEe------CCCCEEEEEEcC------cEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCC
Q 004015 64 TVVHFYSLRSQSYVHMLK------FRSPIYSVRCSS------RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 130 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk------f~s~V~sV~~s~------rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s 130 (779)
+.|+|||+.+++.++.++ +...|.+++|+. ++|++ +.++.|++||+.+++.+.++..|...
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------ 117 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------ 117 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------
Confidence 579999999999888886 346799999963 35554 67889999999999999888765321
Q ss_pred CCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 131 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 131 ~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
+ ..+++.. . ++.
T Consensus 118 ---------i----~~~~~~~-------------~-------------~~~----------------------------- 129 (366)
T 3k26_A 118 ---------I----NELKFHP-------------R-------------DPN----------------------------- 129 (366)
T ss_dssp ---------E----EEEEECS-------------S-------------CTT-----------------------------
T ss_pred ---------E----EEEEECC-------------C-------------CCC-----------------------------
Confidence 1 1122220 0 111
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEe
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f---~aHt~~IsaLaFSPdG~lLATaS 287 (779)
.++.+..+|.|+|||+.+++.+..+ .+|...|.+|+|+|+|.+|++++
T Consensus 130 -----------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 130 -----------------------------LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp -----------------------------EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec
Confidence 1233456889999999999999998 78999999999999999999999
Q ss_pred CCCCEEEEEeCCCC
Q 004015 288 VQGHNINIFKIIPG 301 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~ 301 (779)
.||+ |+|||+..+
T Consensus 181 ~dg~-i~i~d~~~~ 193 (366)
T 3k26_A 181 MDHS-LKLWRINSK 193 (366)
T ss_dssp TTSC-EEEEESCSH
T ss_pred CCCC-EEEEECCCC
Confidence 9998 899998753
No 57
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.75 E-value=3e-16 Score=161.76 Aligned_cols=170 Identities=14% Similarity=0.164 Sum_probs=130.4
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+.|++||+++++.+..++. ...|.+++|+ +++|++ +.++.|++||+.+++.+..+... .
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~--------------- 225 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-S--------------- 225 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-S---------------
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC-C---------------
Confidence 36799999999999999974 7889999995 556655 67899999999999887776421 0
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
++ ..+++.. ++..
T Consensus 226 ~v----~~~~~s~---------------------------~~~~------------------------------------ 238 (337)
T 1gxr_A 226 QI----FSLGYCP---------------------------TGEW------------------------------------ 238 (337)
T ss_dssp CE----EEEEECT---------------------------TSSE------------------------------------
T ss_pred ce----EEEEECC---------------------------CCCE------------------------------------
Confidence 00 0122210 1111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
++.+..+|.|++||+.+++. ..+..|..+|.+++|+|+|++|++++.||. |++||+
T Consensus 239 ----------------------l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~ 294 (337)
T 1gxr_A 239 ----------------------LAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRT 294 (337)
T ss_dssp ----------------------EEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEET
T ss_pred ----------------------EEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEEC
Confidence 12234568899999998875 467899999999999999999999999987 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
..+ ..+..+. ....|.+++|+||+++|++++.||+|+||++
T Consensus 295 ~~~--------------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYG--------------ASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTC--------------CEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCC--------------eEEEEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 875 2222221 2345999999999999999999999999997
No 58
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.75 E-value=3.1e-16 Score=169.94 Aligned_cols=217 Identities=11% Similarity=0.117 Sum_probs=144.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCC-CCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~-T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
++|+|||+.+++.++++.. ...|.+++|++++|++ +.++.|++||+. ..+.+..+..|... ...+
T Consensus 156 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------v~~~ 223 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE------------VCGL 223 (401)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC------------EEEE
T ss_pred CeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCC------------eeEE
Confidence 6799999999999999964 7899999999777766 678999999999 45667777766321 2234
Q ss_pred eecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeec-CCcccccccccccc
Q 004015 141 AVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL-GDLGYKKLSQYCSE 215 (779)
Q Consensus 141 Algp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~l-Gd~~~~~ls~y~~~ 215 (779)
++.| ++||.++.+ +.+|+.. ..+.+ ..+ +... .+... .
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~-----------------------------~~~~~----~~~~~~~~--~v~~~--~ 266 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDAR-----------------------------SSIPK----FTKTNHNA--AVKAV--A 266 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT-----------------------------CSSEE----EEECCCSS--CCCEE--E
T ss_pred EEcCCCCEEEEEeCCCeEEEccCC-----------------------------CCCcc----EEecCCcc--eEEEE--E
Confidence 4443 566666432 2223211 00000 000 0000 00000 0
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccc--cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCCC
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPD--ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS--VQGH 291 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s--~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS--~DGt 291 (779)
..|++ ...++. +..+|.|++||+.+++++..+. |...|.+++|+|+|++|++++ .||.
T Consensus 267 ~~p~~-----------------~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 267 WCPWQ-----------------SNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp ECTTS-----------------TTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred ECCCC-----------------CCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCc
Confidence 00110 001233 2368999999999999998886 667899999999999999965 7886
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
|+|||+..+ ....+..+. ++ ...|.+++|+||+++|++++.||+|+||++......
T Consensus 329 -i~v~~~~~~------------~~~~~~~~~-~h-~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 329 -LSIWSYSSS------------GLTKQVDIP-AH-DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp -EEEEEEETT------------EEEEEEEEE-CC-SSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred -EEEEecCCc------------cceeEEEec-CC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 999998764 223334442 32 345999999999999999999999999999876543
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.75 E-value=8.8e-17 Score=170.26 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=135.2
Q ss_pred CEEEEEECCCCcEEEEEe--------------CCCCEEEEEEcC---cEEE-EEeCCeEEEEeCCCCcEEEEEecCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLK--------------FRSPIYSVRCSS---RVVA-ICQAAQVHCFDAATLEIEYAILTNPIVM 125 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk--------------f~s~V~sV~~s~---rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~ 125 (779)
++|+|||+.+++....+. +...|.+|+|+. ++|+ .+.++.|++||+.+++.+..+.....
T Consensus 66 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-- 143 (408)
T 4a11_B 66 GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET-- 143 (408)
T ss_dssp SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC--
T ss_pred CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc--
Confidence 669999999988777665 678999999953 3454 56799999999999998877753110
Q ss_pred CCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc
Q 004015 126 GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 205 (779)
Q Consensus 126 ~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~ 205 (779)
... +++.. . ..++.
T Consensus 144 -----------~~~-------~~~~~-------------~-----------~~~~~------------------------ 157 (408)
T 4a11_B 144 -----------VYS-------HHMSP-------------V-----------STKHC------------------------ 157 (408)
T ss_dssp -----------EEE-------EEECS-------------S-----------CSSCC------------------------
T ss_pred -----------eee-------eEeec-------------C-----------CCCCc------------------------
Confidence 000 11110 0 00010
Q ss_pred ccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEE
Q 004015 206 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLV 284 (779)
Q Consensus 206 ~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLA 284 (779)
.++.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|+ +|+
T Consensus 158 ----------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~ 203 (408)
T 4a11_B 158 ----------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203 (408)
T ss_dssp ----------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEE
T ss_pred ----------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEE
Confidence 123345678999999999999999999999999999999999 699
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee--------------cCCCcccEEEEEEcCCCCEEEEEeCCCe
Q 004015 285 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--------------RGLTNAVIQDISFSDDSNWIMISSSRGT 350 (779)
Q Consensus 285 TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~--------------rG~t~a~I~sIaFSpDg~~LAtgS~DGT 350 (779)
+++.||+ |+|||+..... .+..+. .+ ....|.+++|+||+++|++++.||+
T Consensus 204 ~~~~dg~-i~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 204 TASADSR-VKLWDVRRASG-------------CLITLDQHNGKKSQAVESANTA-HNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEETTSC-EEEEETTCSSC-------------CSEECCTTTTCSCCCTTTSSCS-CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEcCCCc-EEEEECCCCCc-------------ccccccccccccceeecccccc-ccCceeEEEEcCCCCEEEEecCCCe
Confidence 9999998 89999976410 011110 12 2345999999999999999999999
Q ss_pred EEEEecCCCCCcee
Q 004015 351 SHLFAINPLGGSVN 364 (779)
Q Consensus 351 VhIwdl~~~gg~~~ 364 (779)
|+||++........
T Consensus 269 i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 269 MRLWNSSNGENTLV 282 (408)
T ss_dssp EEEEETTTCCBCCC
T ss_pred EEEEECCCCcccee
Confidence 99999987654333
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.75 E-value=2.5e-16 Score=165.39 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=138.8
Q ss_pred CEEEEEECCCCc--EEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge--~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+.+++ .++++. +...|.+|+|+ +++|++ +.++.|++||+.+.+....+..... .
T Consensus 30 ~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~----------- 96 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI--N----------- 96 (372)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC--S-----------
T ss_pred CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC--C-----------
Confidence 679999999998 888887 47899999996 566665 6788999999998876655532110 0
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.++ ..+++.. ++.
T Consensus 97 ~~v----~~~~~~~---------------------------~~~------------------------------------ 109 (372)
T 1k8k_C 97 RAA----RCVRWAP---------------------------NEK------------------------------------ 109 (372)
T ss_dssp SCE----EEEEECT---------------------------TSS------------------------------------
T ss_pred Cce----eEEEECC---------------------------CCC------------------------------------
Confidence 001 1122210 111
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc---EEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~---~v~~f-~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
.++.+..+|.|++||+..+. ....+ .+|...|.+|+|+|+|++|++++.||. |
T Consensus 110 ----------------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i 166 (372)
T 1k8k_C 110 ----------------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-C 166 (372)
T ss_dssp ----------------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-E
T ss_pred ----------------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC-E
Confidence 12233467899999999876 23344 689999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCc---cCC-CCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 294 NIFKIIPGILGTSSA---CDA-GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~---~~~-~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+|||+.......... .+. ......+..+. + +...|.+++|+||+++|++++.||+|+|||+........+..|.
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-S-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-C-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred EEEEcccccccccccccccccccchhhheEecC-C-CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 999975321000000 000 00123344442 3 23459999999999999999999999999998877666777764
Q ss_pred C
Q 004015 370 A 370 (779)
Q Consensus 370 ~ 370 (779)
.
T Consensus 245 ~ 245 (372)
T 1k8k_C 245 L 245 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 61
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.75 E-value=2e-16 Score=167.50 Aligned_cols=196 Identities=14% Similarity=0.170 Sum_probs=135.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc-----CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-----SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s-----~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
.++|++||+.+++.+..+.+...+..+.+. ..+++ .+.++.|++||+.+++.+.++..|...
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------ 188 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE------------ 188 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC------------
T ss_pred CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc------------
Confidence 378999999999999999999999999995 22555 467889999999999888888655211
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.. .+++.. ++..
T Consensus 189 v~-------~~~~~~---------------------------~~~~---------------------------------- 200 (408)
T 4a11_B 189 IL-------AVSWSP---------------------------RYDY---------------------------------- 200 (408)
T ss_dssp EE-------EEEECS---------------------------SCTT----------------------------------
T ss_pred EE-------EEEECC---------------------------CCCc----------------------------------
Confidence 11 122220 1110
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-EEEEe---------------ccCCCCeEEEEEcCCC
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQF---------------RAHKSPISALCFDPSG 280 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~-~v~~f---------------~aHt~~IsaLaFSPdG 280 (779)
.++.+..+|.|++||+++.. ++..+ .+|..+|.+++|+|+|
T Consensus 201 -----------------------ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 201 -----------------------ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp -----------------------EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred -----------------------EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 02234567889999998765 44444 6899999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCC-----c-----------cC--------CC---------CceeEEEEeecCCCc
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSS-----A-----------CD--------AG---------TSYVHLYRLQRGLTN 327 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s-----~-----------~~--------~~---------~s~~~l~~l~rG~t~ 327 (779)
++|++++.||. |+|||+..+..-... . .+ .. .....+..+ .++ .
T Consensus 258 ~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~-~ 334 (408)
T 4a11_B 258 LHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGH-Y 334 (408)
T ss_dssp SEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCC-S
T ss_pred CEEEEecCCCe-EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccC-C
Confidence 99999999998 899999865210000 0 00 00 011222333 232 3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
..|.+++|+||+++|++++.||+|+||++..+.....
T Consensus 335 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 335 KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 4599999999999999999999999999988754433
No 62
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.2e-16 Score=167.80 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=148.4
Q ss_pred CCEEEEEEC----CCCc------EEEEEeC-----------CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEE
Q 004015 63 PTVVHFYSL----RSQS------YVHMLKF-----------RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 63 ~~tVrIWDL----~Tge------~V~tLkf-----------~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl 118 (779)
.++|+|||+ .+++ ....+.. ...|.+|+|+ +++|++ +.++.|++|| .+++.+..+
T Consensus 67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~ 145 (425)
T 1r5m_A 67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL 145 (425)
T ss_dssp BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE
T ss_pred CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec
Confidence 378999999 9999 5666665 3489999996 566665 5788999999 778888888
Q ss_pred ecCCcccCCCCCCCccccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccch
Q 004015 119 LTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 194 (779)
Q Consensus 119 ~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~L 194 (779)
..|... ...+++.| ++|+.++.+ +.+|+.. .+..+..+..
T Consensus 146 ~~~~~~------------v~~~~~~~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~------ 189 (425)
T 1r5m_A 146 NFHRAP------------IVSVKWNKDGTHIISMDVENVTILWNVI------------------SGTVMQHFEL------ 189 (425)
T ss_dssp CCCCSC------------EEEEEECTTSSEEEEEETTCCEEEEETT------------------TTEEEEEECC------
T ss_pred cCCCcc------------EEEEEECCCCCEEEEEecCCeEEEEECC------------------CCcEEEEeec------
Confidence 766321 22345544 556655432 2233210 0000000000
Q ss_pred hceeeecCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 004015 195 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 274 (779)
Q Consensus 195 a~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaL 274 (779)
.......+. .....+++.. +...... . .+.++.+..+|.|++||+.+++++..+.+|..+|.+|
T Consensus 190 -------~~~~~~~~~--~~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 190 -------KETGGSSIN--AENHSGDGSL-GVDVEWV--D----DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL 253 (425)
T ss_dssp -------C-----------------CCC-BSCCEEE--E----TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred -------cccCcccee--eccccCCcce-eeEEEEc--C----CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence 000000000 0000000000 0000000 0 1234566788999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 275 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 275 aFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
+|+|+|++|++++.||. |+|||+... ..+..+ .++ ...|.+++|+||+ +|++++.||+|+||
T Consensus 254 ~~~~~~~~l~~~~~d~~-i~i~d~~~~--------------~~~~~~-~~~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDGT-LRIWHGGNG--------------NSQNCF-YGH-SQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp EEETTTTEEEEEETTSC-EEEECSSSB--------------SCSEEE-CCC-SSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEcCCCE-EEEEECCCC--------------ccceEe-cCC-CccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 99999999999999998 899998764 112233 222 3459999999999 99999999999999
Q ss_pred ecCCCCCceeeccCCC
Q 004015 355 AINPLGGSVNFQPTDA 370 (779)
Q Consensus 355 dl~~~gg~~~~~~H~~ 370 (779)
++........+..|..
T Consensus 316 d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 316 SLKQNTLLALSIVDGV 331 (425)
T ss_dssp ETTTTEEEEEEECTTC
T ss_pred ECCCCcEeEecccCCc
Confidence 9988766666676644
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.75 E-value=1.5e-16 Score=171.02 Aligned_cols=202 Identities=13% Similarity=0.135 Sum_probs=137.5
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+.+++.+.+++ +...|.+|+|+ +++|+ .+.+++|++||+.+++++.++..+..... ...
T Consensus 160 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---------~v~ 230 (420)
T 3vl1_A 160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD---------GVN 230 (420)
T ss_dssp TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTC---------CEE
T ss_pred CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCC---------Ccc
Confidence 3789999999999999998 57899999996 45555 47789999999999999999876532110 111
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
. +++.... ...+. . ... ..+... ...|
T Consensus 231 ~-------~~~~~~~--------------------------~~~~~----~-----------~~~---~~v~~~--~~s~ 257 (420)
T 3vl1_A 231 S-------IALFVGT--------------------------DRQLH----E-----------IST---SKKNNL--EFGT 257 (420)
T ss_dssp E-------EEEEECC--------------------------CSSCG----G-----------GCC---CCCCTT--CSSC
T ss_pred E-------EEEecCC--------------------------cceee----e-----------ccc---Ccccce--EEcC
Confidence 1 2221100 00000 0 000 000000 0001
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGI-LLVTASVQGHNINIF 296 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vw 296 (779)
+ | ..++.+..+|.|+|||+.+++.+..+. .|..+|.+|+|+|+|. +|++++.||+ |+||
T Consensus 258 ~---------------~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vw 318 (420)
T 3vl1_A 258 Y---------------G---KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQW 318 (420)
T ss_dssp T---------------T---EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEE
T ss_pred C---------------C---CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEE
Confidence 1 1 134556788999999999998887775 6899999999999999 9999999997 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
|+..+. ..+..+. ++....|.++.| +++++|++++.||+|+||++....
T Consensus 319 d~~~~~-------------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 319 DLRSPE-------------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ETTCTT-------------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred EcCCCc-------------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 998640 1122332 223345878855 588999999999999999998743
No 64
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.75 E-value=4.5e-17 Score=173.37 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=83.3
Q ss_pred CeEEEEECCCCcEEEEecc-------------CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRA-------------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~a-------------Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
|.|+|||+.+++++..+.+ |..+|.+|+|+|+|++|++++.||+ |+|||+..+
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~------------- 323 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTK------------- 323 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTT-------------
T ss_pred ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC-------------
Confidence 8999999999999999999 9999999999999999999999997 999999875
Q ss_pred eeEEEEeec-----CC--------------CcccEEEEEEcCCC----------CEEEEEeCCCeEEEEecCCC
Q 004015 315 YVHLYRLQR-----GL--------------TNAVIQDISFSDDS----------NWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 315 ~~~l~~l~r-----G~--------------t~a~I~sIaFSpDg----------~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+..+.. ++ +...|.+++|+||+ ++|++++.||+|+||++..+
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 324 -ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp -EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred -ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 34444431 21 13569999999999 79999999999999999753
No 65
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.74 E-value=3.6e-16 Score=175.53 Aligned_cols=227 Identities=13% Similarity=0.104 Sum_probs=152.8
Q ss_pred CEEEEEECCCC----cEEEEEeC-CCC-EEEEEEcC----cEEEE-EeCCeEEEEeCCCC--------cEEEEEecCCcc
Q 004015 64 TVVHFYSLRSQ----SYVHMLKF-RSP-IYSVRCSS----RVVAI-CQAAQVHCFDAATL--------EIEYAILTNPIV 124 (779)
Q Consensus 64 ~tVrIWDL~Tg----e~V~tLkf-~s~-V~sV~~s~----rlLaV-s~d~~I~IwD~~T~--------e~l~tl~t~p~~ 124 (779)
+.|+|||+.++ +.+..+.. ... |.+++|+. ++|++ +.++.|++||+.++ +.+..+..+..
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~- 117 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG- 117 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc-
Confidence 56999999999 88888874 678 99999965 67776 56889999999855 56666655432
Q ss_pred cCCCCCCCccccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecC
Q 004015 125 MGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 202 (779)
Q Consensus 125 ~~~p~s~~~~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lG 202 (779)
....++++| ++|+.++... ......+.++..+.+.. ..+
T Consensus 118 -----------~v~~~~~s~~~~~l~~~~~~~-------------------------~~~~~v~~~d~~~~~~~---~~~ 158 (615)
T 1pgu_A 118 -----------PISDISWDFEGRRLCVVGEGR-------------------------DNFGVFISWDSGNSLGE---VSG 158 (615)
T ss_dssp -----------CEEEEEECTTSSEEEEEECCS-------------------------SCSEEEEETTTCCEEEE---CCS
T ss_pred -----------cEEEEEEeCCCCEEEEeccCC-------------------------CCccEEEEEECCCccee---eec
Confidence 123355544 5565553210 00000001111000000 000
Q ss_pred CccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCC---CeEEEEEcCC
Q 004015 203 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS---PISALCFDPS 279 (779)
Q Consensus 203 d~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~---~IsaLaFSPd 279 (779)
+.. .+.. -...|++ ...++.+..+|.|+|||+.+++++..+.+|.. +|.+++|+|+
T Consensus 159 ~~~--~v~~--~~~~~~~-----------------~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 159 HSQ--RINA--CHLKQSR-----------------PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 217 (615)
T ss_dssp CSS--CEEE--EEECSSS-----------------SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred CCc--cEEE--EEECCCC-----------------CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC
Confidence 000 0000 0000110 01356677899999999999999999999999 9999999999
Q ss_pred -CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec---CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 280 -GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR---GLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 280 -G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r---G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
|++|++++.||. |+|||+..+ ..+..+.. ++ ...|.+++|+ |+++|++++.||+|+||+
T Consensus 218 ~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 218 SGEFVITVGSDRK-ISCFDGKSG--------------EFLKYIEDDQEPV-QGGIFALSWL-DSQKFATVGADATIRVWD 280 (615)
T ss_dssp TCCEEEEEETTCC-EEEEETTTC--------------CEEEECCBTTBCC-CSCEEEEEES-SSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCe-EEEEECCCC--------------CEeEEeccccccc-CCceEEEEEc-CCCEEEEEcCCCcEEEEE
Confidence 999999999998 899999865 34445523 32 3469999999 999999999999999999
Q ss_pred cCCCCCceeeccC
Q 004015 356 INPLGGSVNFQPT 368 (779)
Q Consensus 356 l~~~gg~~~~~~H 368 (779)
+........+..|
T Consensus 281 ~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 281 VTTSKCVQKWTLD 293 (615)
T ss_dssp TTTTEEEEEEECC
T ss_pred CCCCcEEEEEcCC
Confidence 9887666666655
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.74 E-value=3.8e-16 Score=182.72 Aligned_cols=228 Identities=14% Similarity=0.127 Sum_probs=157.3
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.++++. +..+|.+++|+ +++|++ +.++.|++||+.+++.+.++..|... ...
T Consensus 35 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~------------v~~ 102 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY------------IRS 102 (814)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC------------EEE
T ss_pred CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC------------EEE
Confidence 679999999999999998 47899999996 556655 67899999999999999999876432 223
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
++++| ++|+.++.+ ..+..|-.+..+.+.. ...++.. .+... ...
T Consensus 103 ~~~s~~~~~l~~~~~d---------------------------g~i~vw~~~~~~~~~~--~~~~~~~--~v~~~--~~~ 149 (814)
T 3mkq_A 103 IAVHPTKPYVLSGSDD---------------------------LTVKLWNWENNWALEQ--TFEGHEH--FVMCV--AFN 149 (814)
T ss_dssp EEECSSSSEEEEEETT---------------------------SEEEEEEGGGTSEEEE--EEECCSS--CEEEE--EEE
T ss_pred EEEeCCCCEEEEEcCC---------------------------CEEEEEECCCCceEEE--EEcCCCC--cEEEE--EEE
Confidence 55544 466655432 1111111111100000 0000000 00000 000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcC--CCCEEEEEeCCCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDP--SGILLVTASVQGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt-~~IsaLaFSP--dG~lLATaS~DGt~I~ 294 (779)
|. + ...++.+..+|.|++||+.++.....+..|. ..|.+++|+| +|.+|++++.||+ |+
T Consensus 150 p~----------~-------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~ 211 (814)
T 3mkq_A 150 PK----------D-------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IK 211 (814)
T ss_dssp TT----------E-------EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EE
T ss_pred cC----------C-------CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EE
Confidence 10 0 0134566788999999999988888887665 8999999999 9999999999997 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
+||+..+ ..+..+ +++ ...|.+++|+||+++|++++.||+|+||++..+.....+..|..
T Consensus 212 ~~d~~~~--------------~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 271 (814)
T 3mkq_A 212 IWDYQTK--------------SCVATL-EGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271 (814)
T ss_dssp EEETTTT--------------EEEEEE-ECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS
T ss_pred EEECCCC--------------cEEEEE-cCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC
Confidence 9999765 334444 333 24599999999999999999999999999998766666766643
No 67
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.74 E-value=6.1e-16 Score=164.94 Aligned_cols=228 Identities=12% Similarity=0.147 Sum_probs=138.6
Q ss_pred CCEEEEEECCCCc--EEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCc---EEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE---IEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~Tge--~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e---~l~tl~t~p~~~~~p~s~~~ 133 (779)
.++|+|||+.+++ ++.+++ +...|.+|+|+ +++|++ +.|++|++||+.+.+ ++..+..|..
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~---------- 151 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ---------- 151 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS----------
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC----------
Confidence 3679999998874 566666 46789999996 556665 678999999998764 3445544422
Q ss_pred cccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 134 GIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 134 ~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
....++++| ++||.++.+ ..+..|-....+.... ....|+.. .+.
T Consensus 152 --~v~~~~~~p~~~~l~s~s~d---------------------------~~i~~w~~~~~~~~~~-~~~~~h~~--~v~- 198 (345)
T 3fm0_A 152 --DVKHVVWHPSQELLASASYD---------------------------DTVKLYREEEDDWVCC-ATLEGHES--TVW- 198 (345)
T ss_dssp --CEEEEEECSSSSCEEEEETT---------------------------SCEEEEEEETTEEEEE-EEECCCSS--CEE-
T ss_pred --CeEEEEECCCCCEEEEEeCC---------------------------CcEEEEEecCCCEEEE-EEecCCCC--ceE-
Confidence 122344444 455555321 1111111110000000 00001100 000
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC---------------CcEEEEecc-CCCCeEEEE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS---------------KNVIAQFRA-HKSPISALC 275 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s---------------~~~v~~f~a-Ht~~IsaLa 275 (779)
.+. -++. | ..++++..||+|+|||... ..++.++.+ |...|.+|+
T Consensus 199 ---~l~---------~sp~----g---~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 199 ---SLA---------FDPS----G---QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp ---EEE---------ECTT----S---SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred ---EEE---------ECCC----C---CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 000 0111 1 1456778899999999632 134566665 899999999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 004015 276 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLF 354 (779)
Q Consensus 276 FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIw 354 (779)
|+|++.+||+++.|++ |+||+..+..... .........+..++. ..|.+|+|+|++ .+||+++.||+|+||
T Consensus 260 ~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~------~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 260 WCQLTGALATACGDDA-IRVFQEDPNSDPQ------QPTFSLTAHLHQAHS-QDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp ECTTTCCEEEEETTSC-EEEEEECTTSCTT------SCCEEEEEEETTSSS-SCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EecCCCEEEEEeCCCe-EEEEEeCCCCCcc------eeeEEEEeeeccccc-CcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 9999999999999998 8999987641000 001122223334543 459999999998 599999999999999
Q ss_pred ecCCCC
Q 004015 355 AINPLG 360 (779)
Q Consensus 355 dl~~~g 360 (779)
++....
T Consensus 332 ~~~~~~ 337 (345)
T 3fm0_A 332 KYQRPE 337 (345)
T ss_dssp EECC--
T ss_pred EecCCC
Confidence 997754
No 68
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.9e-16 Score=160.50 Aligned_cols=247 Identities=13% Similarity=0.167 Sum_probs=151.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCC---cEEEEEecCCcccCCCCCCCcccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL---EIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~---e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
++|+|||+.+++.+..+.. ...|.+++|+ +++|++ +.++.|++||+.+. +.+..+..|.. .
T Consensus 39 g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~------------~ 106 (313)
T 3odt_A 39 GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG------------N 106 (313)
T ss_dssp SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS------------C
T ss_pred CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc------------C
Confidence 7799999999998888865 7899999996 556655 67899999998865 44556655432 1
Q ss_pred ccceeecCceeEeeCCC--ceecCCCccCCcccccc--ccccc--ccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 137 YGPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQS--RSFSG--FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s--~~~s~--~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
...+++.++.|+.++.+ +.+|+.+.... .+... ....- ...++..++....+ |...+.+.. +.+.
T Consensus 107 i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~i~i~d~~-~~~~ 177 (313)
T 3odt_A 107 VCSLSFQDGVVISGSWDKTAKVWKEGSLVY-NLQAHNASVWDAKVVSFSENKFLTASAD-------KTIKLWQND-KVIK 177 (313)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTEEEE-EEECCSSCEEEEEEEETTTTEEEEEETT-------SCEEEEETT-EEEE
T ss_pred EEEEEecCCEEEEEeCCCCEEEEcCCcEEE-ecccCCCceeEEEEccCCCCEEEEEECC-------CCEEEEecC-ceEE
Confidence 23455566777776543 34454321100 00000 00000 00022222211111 111122211 0000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG 290 (779)
.+.......+...... . .+.++.+..+|.|+|||+.+++++..+.+|..+|++++|+|+| .|++++.||
T Consensus 178 ----~~~~~~~~~i~~~~~~--~----~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg 246 (313)
T 3odt_A 178 ----TFSGIHNDVVRHLAVV--D----DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDR 246 (313)
T ss_dssp ----EECSSCSSCEEEEEEE--E----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTS
T ss_pred ----EEeccCcccEEEEEEc--C----CCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCC
Confidence 0000000111100000 0 1235677889999999999999999999999999999999999 588999998
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+ |+|||+..+ ..+..+. ++ ...|.+++|+||++ +++++.||+|+||++....
T Consensus 247 ~-v~iwd~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 247 T-VRIWSKENG--------------SLKQVIT-LP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp E-EEEECTTTC--------------CEEEEEE-CS-SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred E-EEEEECCCC--------------ceeEEEe-cc-CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 7 999999875 2334443 22 24599999999999 5579999999999997653
No 69
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.4e-17 Score=188.88 Aligned_cols=117 Identities=11% Similarity=0.037 Sum_probs=92.5
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEE--EEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISAL--CFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaL--aFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++++..||+|+|||+.++ .++..+.+|..+|.+| +|+|+| ++|||||.||+ |+|||+... ...
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t-vklWD~~~~------------~~~ 346 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY-FYIFNPKDI------------ATT 346 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE-EEEECGGGH------------HHH
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe-EEEEECCCC------------Ccc
Confidence 455678999999999976 4566789999999999 689998 99999999997 899999764 111
Q ss_pred EEEEeecCCCc-ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 317 HLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 317 ~l~~l~rG~t~-a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
. .+. ++.. ..|.+++||||++.||+++.|++|+|||+........+.+|...+.
T Consensus 347 ~--~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~ 401 (524)
T 2j04_B 347 K--TTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT 401 (524)
T ss_dssp C--EEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred c--ccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence 1 111 1111 2378999999999999999999999999998777778888865443
No 70
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.74 E-value=1.1e-16 Score=166.79 Aligned_cols=220 Identities=15% Similarity=0.156 Sum_probs=142.6
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEE--c--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRC--S--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~--s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|++||+.+++.+....+...|.+|+| + +++|++ +.++.|++||+.+.+.+.++..+....
T Consensus 107 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------ 174 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY------------ 174 (368)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE------------
T ss_pred CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce------------
Confidence 37899999999999998889999999999 5 444554 678999999999999988887643110
Q ss_pred cceeecCceeEee--CCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 138 GPLAVGPRWLAYS--GSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 138 ~piAlgpRwLAya--s~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
.+......++.+ +..+.+++. +..... ...+...... ...+..
T Consensus 175 -~~~~~~~~~~~~~~~~~i~~~~~-----------------------------~~~~~~---~~~~~~~~~~--~~~~~~ 219 (368)
T 3mmy_A 175 -CADVIYPMAVVATAERGLIVYQL-----------------------------ENQPSE---FRRIESPLKH--QHRCVA 219 (368)
T ss_dssp -EEEEETTEEEEEEGGGCEEEEEC-----------------------------SSSCEE---EEECCCSCSS--CEEEEE
T ss_pred -EEEecCCeeEEEeCCCcEEEEEe-----------------------------ccccch---hhhccccccC--CCceEE
Confidence 111112222222 111222211 000000 0000000000 000000
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC---cEEEEeccCCC------------CeEEEEEcCCC
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKS------------PISALCFDPSG 280 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~------------~IsaLaFSPdG 280 (779)
+.++.. .. ...++.+..+|.|+|||+... ..+..+.+|.. +|++++|+|+|
T Consensus 220 ~~~~~~---------~~-----~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 220 IFKDKQ---------NK-----PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp EEECTT---------SC-----EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT
T ss_pred EcccCC---------CC-----CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC
Confidence 000000 00 001456778999999999987 66788888886 79999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
++||+++.||+ |+|||+..+ ..+..+. ++ ...|.+++|+||+++||+++.|+..+.|++-...
T Consensus 286 ~~l~s~~~dg~-i~iwd~~~~--------------~~~~~~~-~~-~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 286 GTLATVGSDGR-FSFWDKDAR--------------TKLKTSE-QL-DQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp CCEEEEETTSC-EEEEETTTT--------------EEEEECC-CC-SSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CEEEEEccCCe-EEEEECCCC--------------cEEEEec-CC-CCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 99999999998 899999875 4455553 32 3459999999999999999999977777665433
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.73 E-value=3.3e-16 Score=163.17 Aligned_cols=234 Identities=14% Similarity=0.119 Sum_probs=143.3
Q ss_pred CEEEEEECCCCcEEEEE--eCCCCEEEEEEcC-----cEEEE-EeCCeEEEEeCCCCc-EEEEEecCCcccCCCCCCCcc
Q 004015 64 TVVHFYSLRSQSYVHML--KFRSPIYSVRCSS-----RVVAI-CQAAQVHCFDAATLE-IEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tL--kf~s~V~sV~~s~-----rlLaV-s~d~~I~IwD~~T~e-~l~tl~t~p~~~~~p~s~~~~ 134 (779)
++|+|||+.+++..... .+...|.+++|+. ++|++ +.++.|++||+.+.+ .+..+..|.....+
T Consensus 44 ~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~------- 116 (357)
T 3i2n_A 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINA------- 116 (357)
T ss_dssp EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEE-------
T ss_pred cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEE-------
Confidence 78999999999876554 4578999999952 55555 678999999999988 78888766432111
Q ss_pred ccccc-eeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 135 IGYGP-LAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 135 ~~~~p-iAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
+.+.+ +++++ ++|+.++.+ +.+|+..... ..+..+.. ..++.. ..+
T Consensus 117 ~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-----------------~~~~~~~~-----------~~~~~~-~~v 167 (357)
T 3i2n_A 117 IDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-----------------DPVANMEP-----------VQGENK-RDC 167 (357)
T ss_dssp EEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-----------------SCSEEECC-----------CTTSCC-CCE
T ss_pred EeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-----------------Ccceeccc-----------cCCCCC-Cce
Confidence 11100 12222 455555432 2233211000 00000000 000000 000
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC---CCCEEEEE
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP---SGILLVTA 286 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP---dG~lLATa 286 (779)
....... ..++. ...++.+..+|.|++||+.+++.+ ....|...|.+++|+| +|.+|+++
T Consensus 168 ~~~~~~~---------~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 168 WTVAFGN---------AYNQE-------ERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp EEEEEEC---------CCC-C-------CCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred EEEEEEe---------ccCCC-------CCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEE
Confidence 0000000 00010 113556678899999999998874 4468899999999999 99999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCCc
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
+.||+ |+|||+.....- .......+ .++ ...|.+++|+||++ +|++++.||+|+||++......
T Consensus 231 ~~dg~-i~i~d~~~~~~~---------~~~~~~~~-~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 231 SLEGK-FHVFDMRTQHPT---------KGFASVSE-KAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp ESTTE-EEEEEEEEEETT---------TEEEEEEE-ECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCCe-EEEEeCcCCCcc---------cceeeecc-CCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 99997 899998764100 00111111 233 34599999999999 8999999999999999875443
No 72
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.5e-17 Score=171.05 Aligned_cols=110 Identities=17% Similarity=0.288 Sum_probs=87.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE-
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL- 318 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l- 318 (779)
++++..||.|+|||+.+++++..+. .|...|.+++|+|+|.+||+|+.||+ |+|||+..+ ..+
T Consensus 142 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~--------------~~~~ 206 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSP--------------DQAS 206 (343)
T ss_dssp EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCT--------------TSCC
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCC--------------CCCc
Confidence 3456678999999999999877775 45568999999999999999999998 899999875 111
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
..+..++ ...|.+++|+||+++|++++ |++|+|||+........+..
T Consensus 207 ~~~~~~h-~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 207 SRFPVDE-EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp EECCCCT-TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred cEEeccC-CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence 2332222 35699999999999999999 55999999988765555554
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-15 Score=156.92 Aligned_cols=228 Identities=10% Similarity=0.134 Sum_probs=142.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-EeC-----CeEEEEeCCCCcEEEEEecCCcc-c-CCCCCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQA-----AQVHCFDAATLEIEYAILTNPIV-M-GHPSAGG 132 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s~d-----~~I~IwD~~T~e~l~tl~t~p~~-~-~~p~s~~ 132 (779)
.++|++||+.+++.+..+.+...|.+++|+ +++|++ +.+ +.|++||+.+.+....+...... . ......+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 378999999999999999999999999996 566665 455 79999999876543222211000 0 0000000
Q ss_pred ccccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 133 IGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 133 ~~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
......+++++ ++|+.++.+ ..+..|-.........-+ .+... .+.
T Consensus 175 -~~~~~~~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~--~~~~~--~v~ 222 (369)
T 3zwl_B 175 -LDAATVAGWSTKGKYIIAGHKD---------------------------GKISKYDVSNNYEYVDSI--DLHEK--SIS 222 (369)
T ss_dssp -CCCEEEEEECGGGCEEEEEETT---------------------------SEEEEEETTTTTEEEEEE--ECCSS--CEE
T ss_pred -ccceeEEEEcCCCCEEEEEcCC---------------------------CEEEEEECCCCcEeEEEE--ecCCC--cee
Confidence 00122333433 455554321 111111111100000000 00000 000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG 290 (779)
.. .. .+. ...++.+..+|.|+|||+.+++.+..+. |..++.+++|+|+|++|++++.++
T Consensus 223 ~~--~~-----------~~~-------~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 223 DM--QF-----------SPD-------LTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EE--EE-----------CTT-------SSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC
T ss_pred EE--EE-----------CCC-------CCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCC
Confidence 00 00 011 1134566789999999999999998888 788999999999999999999987
Q ss_pred C-------------EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 291 H-------------NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 291 t-------------~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
. .+++||+..+ ..+..+ .++ ...|.+++|+||+++|++++.||+|+||++.
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~-~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFE--------------EEIGRV-QGH-FGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp -------------CEEEEEETTTC--------------CEEEEE-ECC-SSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred CceEEEEecCCCcceeEEEecCCC--------------cchhhe-ecc-cCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 3 4899998765 334444 333 3459999999999999999999999999997
Q ss_pred CC
Q 004015 358 PL 359 (779)
Q Consensus 358 ~~ 359 (779)
..
T Consensus 346 ~~ 347 (369)
T 3zwl_B 346 KS 347 (369)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.72 E-value=3.8e-16 Score=171.01 Aligned_cols=248 Identities=15% Similarity=0.185 Sum_probs=157.8
Q ss_pred CCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcCcEE-EEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVV-AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s~rlL-aVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..++|++||+.+++.++++. +...|.++.++++.| +.+.++.|++||+.+++++.++..+.....+
T Consensus 177 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~------------ 244 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC------------ 244 (445)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE------------
T ss_pred CCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE------------
Confidence 46889999999999999997 599999999986554 5699999999999999999999887665444
Q ss_pred eeecCceeEeeCCC--ceecCCCccCCc-ccccccccccccCCCcceeeeecccccchhc----eeeecCCccccccccc
Q 004015 140 LAVGPRWLAYSGSP--VVVSNDGRVNPQ-HLMQSRSFSGFASNGSRVAHYAKESSKHLAA----GIVNLGDLGYKKLSQY 212 (779)
Q Consensus 140 iAlgpRwLAyas~~--~i~~~sgrvspq-~ls~s~~~s~~~s~g~~va~~A~~~sK~La~----Gl~~lGd~~~~~ls~y 212 (779)
+++..++|+.++.+ +.+|+.....+. .+. .....+...+. ..+.++. |...+.+.........
T Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ---------GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEECSSCEEEEETTSCEEEEEGGGTEEEEEEC---------CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEECCCEEEEEcCCCEEEEEECCCCcEeEEec---------CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 22244555555442 334431100000 000 00011111111 1111111 1111222110000000
Q ss_pred cccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc---CCCCeEEEEEcCCCCEEEEEeCC
Q 004015 213 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA---HKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 213 ~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a---Ht~~IsaLaFSPdG~lLATaS~D 289 (779)
+......+...... ...++.+..+|.|++||+.+++++..+.. |..+|.+++|+ +.+|++|+.|
T Consensus 315 ----~~~~~~~v~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d 381 (445)
T 2ovr_B 315 ----LTGHQSLTSGMELK-------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD 381 (445)
T ss_dssp ----ECCCCSCEEEEEEE-------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred ----EcCCcccEEEEEEe-------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC
Confidence 00000000000000 12456777899999999999999999986 88999999996 6899999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEe---ecCCCcccEEEEEEcCCCCEEEEEeCCCe----EEEEecCCC
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRL---QRGLTNAVIQDISFSDDSNWIMISSSRGT----SHLFAINPL 359 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l---~rG~t~a~I~sIaFSpDg~~LAtgS~DGT----VhIwdl~~~ 359 (779)
|+ |+|||+.++ ..+..+ ..+.....|++++|+||+.+||+++.||+ ++|||+...
T Consensus 382 g~-v~iwd~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 382 GT-VKLWDLKTG--------------EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SE-EEEEETTTC--------------CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred Ce-EEEEECCCC--------------ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 97 999999875 233333 22333456999999999999999999998 999999764
No 75
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.72 E-value=5e-16 Score=191.26 Aligned_cols=206 Identities=14% Similarity=0.155 Sum_probs=150.4
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+.+++. ...|.+|+|+ +++|++ +.+++|++||+.+++++.++..|... ..
T Consensus 637 ~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------v~- 703 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ------------VN- 703 (1249)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC------------EE-
T ss_pred CeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc------------EE-
Confidence 6799999999999999984 7899999996 556665 67899999999999999998776321 11
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+++.... ++.
T Consensus 704 ------~~~~~~~~-------------------------~~~-------------------------------------- 714 (1249)
T 3sfz_A 704 ------CCHFTNKS-------------------------NHL-------------------------------------- 714 (1249)
T ss_dssp ------EEEECSSS-------------------------SCC--------------------------------------
T ss_pred ------EEEEecCC-------------------------Cce--------------------------------------
Confidence 12222100 000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++++..+|.|+|||+.+++++..+.+|..+|.+++|+|+|++|++++.||+ |++||+.
T Consensus 715 --------------------~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~-v~vwd~~ 773 (1249)
T 3sfz_A 715 --------------------LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT-LRLWDVR 773 (1249)
T ss_dssp --------------------EEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE-EEEEEGG
T ss_pred --------------------EEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe-EEEEeCC
Confidence 1233456899999999999999999999999999999999999999999997 9999986
Q ss_pred CCCC-------C--------------C-CC-ccCCCC--------ce---------eEEEEeecCCCcccEEEEEEcCCC
Q 004015 300 PGIL-------G--------------T-SS-ACDAGT--------SY---------VHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 300 ~~~~-------g--------------~-~s-~~~~~~--------s~---------~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
.+.. . . .+ ...+.+ .. ..+..+..++ ...|.+++|+|++
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~sp~~ 852 (1249)
T 3sfz_A 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH-HSTIQYCDFSPYD 852 (1249)
T ss_dssp GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS-SSCCCEEEECSST
T ss_pred CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC-CCceEEEEEcCCC
Confidence 5410 0 0 00 000000 00 1112222232 3458999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 340 NWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
+++++++.||+|+||++.+......+.+|...+.
T Consensus 853 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 853 HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp TEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 9999999999999999998777777788865433
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.72 E-value=5.8e-16 Score=169.51 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=51.5
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecC
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTN 121 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~ 121 (779)
.++|++||+.+++.+.+++. ...|.++.+++++|++ +.+++|++||+.+++++.++..|
T Consensus 138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h 198 (445)
T 2ovr_B 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGH 198 (445)
T ss_dssp TSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCC
Confidence 37799999999999999874 7889999998777665 67899999999999999888765
No 77
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.72 E-value=1.9e-16 Score=171.10 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=90.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQF--RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f--~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
+++..+|.|+|||+.+++++..+ .+|...|.+|+|+|+|++|++++.||+ |+|||+..+ ..+.
T Consensus 148 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~--------------~~~~ 212 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR-VRVIEPRKG--------------TVVA 212 (402)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE-EEEEETTTT--------------EEEE
T ss_pred EEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc-EEEEeCCCC--------------ceee
Confidence 34456899999999999999999 899999999999999999999999987 999999875 3445
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEE---eCCCeEEEEecCCCCCc
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMIS---SSRGTSHLFAINPLGGS 362 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtg---S~DGTVhIwdl~~~gg~ 362 (779)
.+..++....+.+++|+||+++|++| +.|++|+|||+......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~ 258 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC
Confidence 55445554558899999999999999 79999999999876553
No 78
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.72 E-value=1.6e-16 Score=178.34 Aligned_cols=175 Identities=16% Similarity=0.235 Sum_probs=133.4
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEe--CCeEEEEeCCCCcEEE-EEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQ--AAQVHCFDAATLEIEY-AILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~--d~~I~IwD~~T~e~l~-tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
...+++|++.+++.+..+.+...|.+++|++++|+++. ++.|++||+.+.+... .+..+. .+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~---------------~~ 490 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR---------------AK 490 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS---------------SC
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCcc---------------Cc
Confidence 36788888889999999999999999999988887755 7899999999875442 221110 01
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ ..+++.. +|.
T Consensus 491 v----~~~~~s~---------------------------~g~-------------------------------------- 501 (615)
T 1pgu_A 491 P----SYISISP---------------------------SET-------------------------------------- 501 (615)
T ss_dssp E----EEEEECT---------------------------TSS--------------------------------------
T ss_pred e----EEEEECC---------------------------CCC--------------------------------------
Confidence 1 1122220 111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEEcC----------CCCEEEEEeC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA-HKSPISALCFDP----------SGILLVTASV 288 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a-Ht~~IsaLaFSP----------dG~lLATaS~ 288 (779)
.++.+..+|.|+|||+.+++++..+.+ |..+|++|+|+| +|++||+++.
T Consensus 502 --------------------~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~ 561 (615)
T 1pgu_A 502 --------------------YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 561 (615)
T ss_dssp --------------------EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred --------------------EEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC
Confidence 123345678999999999999999998 999999999999 9999999999
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 289 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 289 DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
||+ |+|||+..+ ...+..+ +++ ...|.+++|+||++ |++++.||+|+||++..
T Consensus 562 dg~-i~iw~~~~~-------------~~~~~~~-~~h-~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 562 DTN-IFIYSVKRP-------------MKIIKAL-NAH-KDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TSC-EEEEESSCT-------------TCCEEET-TSS-TTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CCc-EEEEECCCC-------------ceechhh-hcC-ccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 998 899999764 0223333 444 34599999999999 99999999999999974
No 79
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4e-16 Score=165.48 Aligned_cols=104 Identities=11% Similarity=0.129 Sum_probs=79.2
Q ss_pred ccCCCCeEEEEECCCCcEE-EEecc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 243 DADNVGMVIVRDIVSKNVI-AQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v-~~f~a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.+..+|.|+|||+++++.+ ..|.. |..+|++|+|+|+|.+|++++. ++ |+|||++.... ...+..
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~~~~-----------~~~~~~ 253 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRKDVG-----------TLAYPT 253 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTSSTT-----------CBSSCC
T ss_pred EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCCCCc-----------ceeecc
Confidence 3457899999999999888 88998 9999999999999999999994 45 99999987511 000000
Q ss_pred eecCCCcccE--EEEEEcCCCCEEEEEeC-CCeEEEEecCCCCC
Q 004015 321 LQRGLTNAVI--QDISFSDDSNWIMISSS-RGTSHLFAINPLGG 361 (779)
Q Consensus 321 l~rG~t~a~I--~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg 361 (779)
+. . ....+ .+++|+|+|++||+++. |++++||++.....
T Consensus 254 ~~-~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 254 YT-I-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp CB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred cc-c-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 00 0 00112 47999999999999999 99999999976543
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.72 E-value=7.3e-16 Score=166.58 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=84.0
Q ss_pred CeEEEEECCCCcEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 248 GMVIVRDIVSKNVIA--QFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 248 G~V~VwDl~s~~~v~--~f~aHt~~IsaLaFSPdG~lLATaS~DGt---~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
+.+.+|+..++..+. .+..|...|.+++|+|||++|++++.++. .+++|++.... ........+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~----------~~~~~~~~~~ 266 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN----------TSVLRSKQVT 266 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE----------EEEEEEEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce----------ecceeeeeec
Confidence 456677777766554 34579999999999999999999998874 47888876540 0111222332
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 373 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 373 (779)
++ ...|.+++|||||++||+|+.|++|+|||+.+......+ ++|...+.
T Consensus 267 -~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 267 -NR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp -SS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred -CC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 32 235999999999999999999999999999987666565 67865443
No 81
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.2e-17 Score=174.54 Aligned_cols=111 Identities=17% Similarity=0.337 Sum_probs=88.8
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEE----EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFR-AHKSPISALC----FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLa----FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
.+..+|.|+|||+++++++..+. .|..+|.+|+ |+|+|++|++++.||+ |+|||+..+ ..
T Consensus 231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~ 295 (437)
T 3gre_A 231 LGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVKG--------------HC 295 (437)
T ss_dssp EEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTTT--------------EE
T ss_pred EEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCCC--------------cE
Confidence 34567999999999999999987 8889999995 5567999999999997 999999865 22
Q ss_pred EEEee-----------------------cC-CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 318 LYRLQ-----------------------RG-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 318 l~~l~-----------------------rG-~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+..+. .| .....|.+++|+ ++++|++++.||+|+|||+........+.+|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 22222 11 123348999999 88999999999999999999887777787774
No 82
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.1e-16 Score=181.10 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=83.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC--------------C
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT--------------S 306 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~--------------~ 306 (779)
++.+..+++|+|||++++.++.+|.+|.++|++|+|||+|++||+|+.||+ |+|||+....... .
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~ 448 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWK 448 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEE
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEE
Confidence 456678899999999999998999999999999999999999999999997 8999975431110 0
Q ss_pred CccCCCCc----------------eeEEEEeecCCCcccEEEEEEcCCC---CEEEEEeCCCeEEEEecCC
Q 004015 307 SACDAGTS----------------YVHLYRLQRGLTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 307 s~~~~~~s----------------~~~l~~l~rG~t~a~I~sIaFSpDg---~~LAtgS~DGTVhIwdl~~ 358 (779)
-++.+.+. ...+..+ +|+ ...|.+|+||||+ .+||+|+.||+|+||++.-
T Consensus 449 v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l-~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 449 WDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI-DAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CBCCSSSCEEEECCCCCCCC--------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eccCCCCCeEEccCCceecccccCCcceeee-cCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 01111111 1112222 233 2458999999995 4999999999999999853
No 83
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.71 E-value=5.6e-16 Score=161.11 Aligned_cols=230 Identities=12% Similarity=0.119 Sum_probs=143.6
Q ss_pred CEEEEEECCCCc----EEEEEeCCCCEEEEEEc--Cc-EEEE-EeCCeEEEEeC-CCCcEEEEEec--CCcccCCCCCCC
Q 004015 64 TVVHFYSLRSQS----YVHMLKFRSPIYSVRCS--SR-VVAI-CQAAQVHCFDA-ATLEIEYAILT--NPIVMGHPSAGG 132 (779)
Q Consensus 64 ~tVrIWDL~Tge----~V~tLkf~s~V~sV~~s--~r-lLaV-s~d~~I~IwD~-~T~e~l~tl~t--~p~~~~~p~s~~ 132 (779)
++|+|||+.+++ ......+...|.+++|+ ++ +|++ +.++.|++||+ .+.+. ..+.. |..
T Consensus 33 ~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~--------- 102 (342)
T 1yfq_A 33 GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANL--------- 102 (342)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCS---------
T ss_pred CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCC---------
Confidence 679999999988 66666778999999995 56 5554 67899999999 88765 44444 321
Q ss_pred ccccccceeec-CceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccc---------ccchhceeeecC
Q 004015 133 IGIGYGPLAVG-PRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES---------SKHLAAGIVNLG 202 (779)
Q Consensus 133 ~~~~~~piAlg-pRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~---------sK~La~Gl~~lG 202 (779)
....+++. .++|+.++.+ ..+..|-... .+.+. .+.
T Consensus 103 ---~v~~l~~~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~~~~~~~~~~~~----~~~ 148 (342)
T 1yfq_A 103 ---GICRICKYGDDKLIAASWD---------------------------GLIEVIDPRNYGDGVIAVKNLNSN----NTK 148 (342)
T ss_dssp ---CEEEEEEETTTEEEEEETT---------------------------SEEEEECHHHHTTBCEEEEESCSS----SSS
T ss_pred ---ceEEEEeCCCCEEEEEcCC---------------------------CeEEEEcccccccccccccCCeee----EEe
Confidence 11223333 2445544321 1111111110 00000 000
Q ss_pred CccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC-Cc--EEEEeccCCCCeEEEEEcC-
Q 004015 203 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KN--VIAQFRAHKSPISALCFDP- 278 (779)
Q Consensus 203 d~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s-~~--~v~~f~aHt~~IsaLaFSP- 278 (779)
....+...... ...++.+..+|.|++||+.+ +. .......|..+|.+++|+|
T Consensus 149 -----------------~~~~v~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 149 -----------------VKNKIFTMDTN-------SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp -----------------SCCCEEEEEEC-------SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred -----------------eCCceEEEEec-------CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCC
Confidence 00000000000 01145567889999999998 54 3345568899999999999
Q ss_pred CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC-----CCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 279 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG-----LTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 279 dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG-----~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
+|++|++++.||. |+||++... +... .......+..++. .+...|.+++|+||+++|++++.||+|+|
T Consensus 205 ~~~~l~~~~~dg~-i~i~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 277 (342)
T 1yfq_A 205 EQEGYACSSIDGR-VAVEFFDDQ--GDDY----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277 (342)
T ss_dssp GGCEEEEEETTSE-EEEEECCTT--CCST----TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred CCCEEEEEecCCc-EEEEEEcCC--Cccc----ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEE
Confidence 9999999999997 899998753 0000 0011222322221 01236999999999999999999999999
Q ss_pred EecCCCCCceeeccC
Q 004015 354 FAINPLGGSVNFQPT 368 (779)
Q Consensus 354 wdl~~~gg~~~~~~H 368 (779)
||+........+..|
T Consensus 278 wd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 278 WNLQTRKKIKNFAKF 292 (342)
T ss_dssp EETTTTEEEEECCCC
T ss_pred EcCccHhHhhhhhcc
Confidence 999887665666666
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.71 E-value=3.4e-16 Score=163.02 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=83.6
Q ss_pred cCCCCeEEEEECCCCcEEEEec-----cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCC-----ccCCC
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFR-----AHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSS-----ACDAG 312 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~-----aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s-----~~~~~ 312 (779)
+..+|.|+|||+.+++++..+. +|...|.+++|+|+|. +|++++.||. |+|||+......... .....
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCC
T ss_pred ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccc
Confidence 4567899999999876655554 9999999999999999 8999999997 999998764110000 00001
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEE-EEeCCCeEEEEecCCC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPL 359 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LA-tgS~DGTVhIwdl~~~ 359 (779)
+....+..+. ++ ...|.+++|+||+++|+ +++.||+|+||++...
T Consensus 309 ~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 309 GSVSLLQNVT-LS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CEEEEEEEEE-CC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccceeeccc-cC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 1223455553 33 34699999999999999 7999999999999764
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.71 E-value=6.8e-16 Score=166.88 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=86.4
Q ss_pred ccccCCCCeEEEEECCC-CcEEE-------EeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCC
Q 004015 241 FPDADNVGMVIVRDIVS-KNVIA-------QFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s-~~~v~-------~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
++++ .||.|+|||+.+ +..+. .+.+|...|.+++|+|+| .+||+|+.||+ |+|||+..+....
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~------ 263 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALCD------ 263 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSSC------
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCcccc------
Confidence 4455 699999999994 44444 367999999999999999 99999999998 8999998751000
Q ss_pred CCceeEEEEeecCCCc-----------ccEEEEEEcCCCCEEEEEeCCCeEEEEecCC-CCCceeeccCC
Q 004015 312 GTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLFAINP-LGGSVNFQPTD 369 (779)
Q Consensus 312 ~~s~~~l~~l~rG~t~-----------a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~-~gg~~~~~~H~ 369 (779)
..+..+ .++.. ..|.+++|+||+++|++++. ++|+|||+.. ......+..|.
T Consensus 264 ----~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 264 ----RHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp ----TTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred ----ceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 001122 22211 25999999999999999999 9999999987 54455666663
No 86
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.71 E-value=5.1e-16 Score=167.68 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=133.1
Q ss_pred CCEEEEEECCCC-------cEEEEEe-CCCCEEEEEEc--C-cEEEE-EeCCeEEEEeCCCCcEEEEE--ecCCcccCCC
Q 004015 63 PTVVHFYSLRSQ-------SYVHMLK-FRSPIYSVRCS--S-RVVAI-CQAAQVHCFDAATLEIEYAI--LTNPIVMGHP 128 (779)
Q Consensus 63 ~~tVrIWDL~Tg-------e~V~tLk-f~s~V~sV~~s--~-rlLaV-s~d~~I~IwD~~T~e~l~tl--~t~p~~~~~p 128 (779)
.++|+|||+.++ +.+.++. +...|.+|+|+ + ++|++ +.++.|++||+.+++++.++ ..|..
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----- 177 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD----- 177 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-----
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-----
Confidence 378999999998 6677777 57899999996 2 46655 67899999999999988888 33321
Q ss_pred CCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccc
Q 004015 129 SAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKK 208 (779)
Q Consensus 129 ~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ 208 (779)
++ ..+++.. +|.
T Consensus 178 ----------~v----~~~~~~~---------------------------~~~--------------------------- 189 (402)
T 2aq5_A 178 ----------TI----YSVDWSR---------------------------DGA--------------------------- 189 (402)
T ss_dssp ----------CE----EEEEECT---------------------------TSS---------------------------
T ss_pred ----------ce----EEEEECC---------------------------CCC---------------------------
Confidence 01 0122210 111
Q ss_pred cccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-ccCCCC-eEEEEEcCCCCEEEEE
Q 004015 209 LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSP-ISALCFDPSGILLVTA 286 (779)
Q Consensus 209 ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-~aHt~~-IsaLaFSPdG~lLATa 286 (779)
.++.+..+|.|+|||+++++++..+ .+|.+. +.+++|+|+|++|+++
T Consensus 190 -------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 190 -------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp -------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred -------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence 1233456899999999999999999 799886 9999999999999999
Q ss_pred ---eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCC
Q 004015 287 ---SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGG 361 (779)
Q Consensus 287 ---S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~gg 361 (779)
+.||+ |+|||+.... ....+..+ . ....|.+++|+||+++|+++ +.||+|+||++.....
T Consensus 239 ~~~~~d~~-i~iwd~~~~~-----------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 239 FSRMSERQ-VALWDTKHLE-----------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp ECTTCCEE-EEEEETTBCS-----------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ccCCCCce-EEEEcCcccc-----------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 78876 9999998640 01122222 1 22348999999999999755 5799999999987643
No 87
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.71 E-value=1.2e-15 Score=161.98 Aligned_cols=113 Identities=12% Similarity=0.212 Sum_probs=90.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+++..||+|+|||+.+++.+..|.+|..+|.+|+|+|+|++|++++.||+ |+|||+... ....+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~-i~~wd~~~~---------------~~~~~ 155 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE-IKLWNILGE---------------CKFSS 155 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSC-EEEEESSSC---------------EEEEC
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE-EEEEeccCC---------------ceeee
Confidence 34567899999999999999999999999999999999999999999998 899998742 12222
Q ss_pred ec-CCCcccEEEEEEcCCC----------CEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 322 QR-GLTNAVIQDISFSDDS----------NWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 322 ~r-G~t~a~I~sIaFSpDg----------~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
.. ..+...|.+++|+|++ .+|++++.||+|+|||. .......+..|...
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~ 215 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN 215 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc
Confidence 11 1123459999999997 79999999999999994 33344456677543
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.6e-16 Score=170.71 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=86.7
Q ss_pred CCCCeEEEEECCCCcEEE----EeccCCCCeEEEEEcCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 245 DNVGMVIVRDIVSKNVIA----QFRAHKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~----~f~aHt~~IsaLaFSPd---G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
..+|.|.+||+.++.... .+.+|...|.+|+|+|+ |++|++|+.||+ |+|||+..+ ..
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~--------------~~ 232 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQC--------------FI 232 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCT--------------TC
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCC--------------ce
Confidence 457889999998876544 78899999999999999 999999999998 899999764 22
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
+..+..++. ..|.+++|+ |+++|++++.|++|+|||+........+..
T Consensus 233 ~~~~~~~h~-~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 233 VDKWLFGHK-HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp EEEECCCCS-SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred eeeeecCCC-CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 334334443 459999999 999999999999999999988765555543
No 89
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.7e-16 Score=188.69 Aligned_cols=176 Identities=15% Similarity=0.107 Sum_probs=131.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc-Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s-~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
++|+|||..+++.+..+.+..+|.+|+|+ ++ +++++.|++|++||+.+++++.++. ++. .+
T Consensus 39 g~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~---------------~V- 101 (902)
T 2oaj_A 39 GEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPG---------------KI- 101 (902)
T ss_dssp SEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSS---------------CE-
T ss_pred CEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCC---------------CE-
Confidence 78999999999988887778899999997 55 4455789999999999999888874 211 01
Q ss_pred ecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCc
Q 004015 142 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 221 (779)
Q Consensus 142 lgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~ 221 (779)
..+++. | ++.
T Consensus 102 ---~~v~~s-------------p--------------~g~---------------------------------------- 111 (902)
T 2oaj_A 102 ---TSIDTD-------------A--------------SLD---------------------------------------- 111 (902)
T ss_dssp ---EEEECC-------------T--------------TCS----------------------------------------
T ss_pred ---EEEEEC-------------C--------------CCC----------------------------------------
Confidence 011221 0 111
Q ss_pred CccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEE-----------EEeccCCCCeEEEEEcCC-CCEEEEEeCC
Q 004015 222 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI-----------AQFRAHKSPISALCFDPS-GILLVTASVQ 289 (779)
Q Consensus 222 ~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v-----------~~f~aHt~~IsaLaFSPd-G~lLATaS~D 289 (779)
.++.+..+|.|++||+.++++. ..+++|.++|.+|+|+|+ +.+|++|+.|
T Consensus 112 ------------------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 112 ------------------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp ------------------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred ------------------EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 1223456799999999988764 334689999999999996 5799999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC----------------CCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG----------------LTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG----------------~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
|+ | |||+... ..+..+... .+...|.+++|+|||++||+++.||+|+|
T Consensus 174 g~-v-lWd~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 174 VT-L-TYSLVEN--------------EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp CE-E-EEETTTT--------------EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred Cc-E-EEECCCC--------------ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 87 8 9999875 233333211 01245999999999999999999999999
Q ss_pred EecCCCC
Q 004015 354 FAINPLG 360 (779)
Q Consensus 354 wdl~~~g 360 (779)
||+....
T Consensus 238 Wd~~~g~ 244 (902)
T 2oaj_A 238 WDANSGH 244 (902)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9998753
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.70 E-value=2.4e-15 Score=164.72 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=85.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++.+..+|.|+|||+.+++++..+.+|..+|.+++|+ +.+|++++.||+ |+|||+... ...+
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~--------------~~~~ 386 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDY--------------SRKF 386 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTC--------------CEEE
T ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCC--------------ceee
Confidence 35677889999999999999999999999999999998 689999999997 999999864 2334
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.+.. ...+..++|++++++|++++ ||+|+|||+.+..
T Consensus 387 ~~~~---~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 387 SYHH---TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEC---TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred eecC---CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 4432 23477899999999999999 9999999998754
No 91
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.69 E-value=1.5e-16 Score=195.99 Aligned_cols=193 Identities=18% Similarity=0.254 Sum_probs=143.4
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
.++|++||+.+++.+....+...|.++.++ +++++++.++.|++||+.+++.+.++..|.... ..
T Consensus 1024 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v------------~~- 1090 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV------------LS- 1090 (1249)
T ss_dssp SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCC------------CC-
T ss_pred CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcE------------EE-
Confidence 377999999999988777778999999995 567777899999999999999888887653211 11
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
+++.. +|.
T Consensus 1091 ------~~~s~---------------------------d~~--------------------------------------- 1098 (1249)
T 3sfz_A 1091 ------CAISS---------------------------DAT--------------------------------------- 1098 (1249)
T ss_dssp ------EEECS---------------------------SSS---------------------------------------
T ss_pred ------EEECC---------------------------CCC---------------------------------------
Confidence 12210 111
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
.++.+..+|.|+|||+.+++++..+.+|..+|++++|+|||++|||++.||+ |+|||+.+
T Consensus 1099 -------------------~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~~ 1158 (1249)
T 3sfz_A 1099 -------------------KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSD 1158 (1249)
T ss_dssp -------------------SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESSS
T ss_pred -------------------EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECCC
Confidence 1233456789999999999999999999999999999999999999999998 89999987
Q ss_pred CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 301 ~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+..-.... .... .....+ +...|.+++|||||++|++++ |+++|||+.+......+..|.
T Consensus 1159 ~~~~~~~~-----~~~~-~~~~~~-~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~ 1218 (1249)
T 3sfz_A 1159 GQLLHSCA-----PISV-EEGTAT-HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG 1218 (1249)
T ss_dssp SCCCCCCC-----CCC---------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS
T ss_pred CceEEEec-----cccc-cccccc-cCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC
Confidence 51100000 0000 000112 223589999999999999885 999999999877666666664
No 92
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.4e-16 Score=168.46 Aligned_cols=107 Identities=10% Similarity=0.185 Sum_probs=88.7
Q ss_pred ccccCCCC---eEEEEECCCC-cEEEEec-cCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 241 FPDADNVG---MVIVRDIVSK-NVIAQFR-AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 241 ~~s~~~dG---~V~VwDl~s~-~~v~~f~-aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
++.+..+| .|+|||+.++ .++..+. +|...|.+|+|+| +|++|++++.||+ |+|||+..+
T Consensus 230 l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~------------- 295 (416)
T 2pm9_A 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESA------------- 295 (416)
T ss_dssp EEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSC-------------
T ss_pred EEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCC-------------
Confidence 44556666 9999999986 6788888 9999999999999 9999999999997 999999865
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCCcee
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
..+..+. ++ ...|.+++|+||+ ++|++++.||+|+||++........
T Consensus 296 -~~~~~~~-~~-~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 296 -EQLSQFP-AR-GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp -CEEEEEE-CS-SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred -ccceeec-CC-CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 3444543 32 2458999999999 8999999999999999987654433
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.69 E-value=3.8e-16 Score=171.08 Aligned_cols=218 Identities=11% Similarity=0.169 Sum_probs=142.9
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEE---EEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIE---YAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l---~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|++||+.+++.+.++.. ...|.++++++.+|++ +.++.|++||+.+.+.. ..+..|.. ..
T Consensus 192 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~------------~v 259 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA------------AV 259 (435)
T ss_dssp TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS------------CE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC------------cE
Confidence 57899999999999999975 6789999998766665 67899999999988765 44444421 12
Q ss_pred cceeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 138 ~piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
..+++...+|+.++.+ +.+|+.. .+..+..+ -++..
T Consensus 260 ~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~--------------~~~~~---------- 297 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRTIKVWNTS------------------TCEFVRTL--------------NGHKR---------- 297 (435)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETT------------------TCCEEEEE--------------ECCSS----------
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECC------------------cCcEEEEE--------------cCCCC----------
Confidence 3355556666666432 2222210 00000000 00000
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
.+...... ...++.+..+|.|+|||+.+++++..+.+|..+|.+|+| +|.+|++|+.||+ |+|
T Consensus 298 -------~v~~~~~~-------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~v 360 (435)
T 1p22_A 298 -------GIACLQYR-------DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKV 360 (435)
T ss_dssp -------CEEEEEEE-------TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEE
T ss_pred -------cEEEEEeC-------CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEE
Confidence 00000000 113566778999999999999999999999999999999 8999999999998 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
||+..+...... .....+..+ .++ ...|.+++| |+++|++++.||+|+||++....
T Consensus 361 wd~~~~~~~~~~-----~~~~~~~~~-~~h-~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 361 WDLVAALDPRAP-----AGTLCLRTL-VEH-SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEHHHHTSTTSC-----TTTTEEEEE-CCC-SSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred EECCCCCCcccc-----ccchheeec-cCC-CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 998654100000 001134444 333 345899999 88999999999999999997753
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.69 E-value=7.8e-16 Score=166.41 Aligned_cols=113 Identities=14% Similarity=0.221 Sum_probs=84.6
Q ss_pred cccCCCCeEEEEECCCCcE----EEEeccCCC------------CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC-CCCC
Q 004015 242 PDADNVGMVIVRDIVSKNV----IAQFRAHKS------------PISALCFDPSGILLVTASVQGHNINIFKIIP-GILG 304 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~----v~~f~aHt~------------~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~-~~~g 304 (779)
+.+..+|.|+|||+++++. +..|..|.. +|.+|+|+|+|++|++++. |+ |+|||+.. +
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~--- 317 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMEN--- 317 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCS---
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCc---
Confidence 4456789999999999887 788999986 9999999999999999998 76 99999975 3
Q ss_pred CCCccCCCCceeEEEEeecCCCc--------c---cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 305 TSSACDAGTSYVHLYRLQRGLTN--------A---VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~l~rG~t~--------a---~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
.....+..+..... . .+..++|+||+++|++++.||+|+|||+... ....+..|.
T Consensus 318 ---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~ 383 (447)
T 3dw8_B 318 ---------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEASR 383 (447)
T ss_dssp ---------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC-CEEEEECCS
T ss_pred ---------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC-cceeeeecc
Confidence 01111222221110 0 1345999999999999999999999999875 445666664
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-15 Score=167.76 Aligned_cols=98 Identities=13% Similarity=0.213 Sum_probs=81.0
Q ss_pred ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 243 DADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++..+|.|+|||+.+++++.. +.+|..+|.+++|+ +|++|++++.||+ |+|||+..+ ..+..+
T Consensus 215 s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~--------------~~~~~~ 278 (450)
T 2vdu_B 215 TSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTG--------------KNLSTF 278 (450)
T ss_dssp EEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTC--------------CEEEEE
T ss_pred EEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCC--------------cEeeee
Confidence 345678999999999998888 55999999999999 9999999999987 999999875 222333
Q ss_pred ecC-----------------------CCcccEEEEEEcCCCCEEEEEe-CCCeEEEEec
Q 004015 322 QRG-----------------------LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAI 356 (779)
Q Consensus 322 ~rG-----------------------~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl 356 (779)
..+ .....|.+|+|+||+++|++++ .|++|+||++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 211 1123489999999999999999 8999999999
No 96
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.68 E-value=5.5e-15 Score=172.22 Aligned_cols=219 Identities=17% Similarity=0.260 Sum_probs=132.2
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--C-cEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--S-RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~-rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.++++++++. +...|.+|+|+ + .+++.+.|++|++||+... +..++..... +.. -...
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~--~h~------~~v~ 521 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGE--GHR------DWVS 521 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTT--SCS------SCEE
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCC--CCC------CcEE
Confidence 3789999999999999887 47889999996 3 4555688999999998654 3444422100 000 0122
Q ss_pred ceeecC----ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 139 PLAVGP----RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 139 piAlgp----RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.++++| ..|+.++. ...+..|-....+.+. ...++.+ .+...
T Consensus 522 ~~~~~~~~~~~~l~s~s~---------------------------d~~v~vwd~~~~~~~~---~~~~h~~--~v~~v-- 567 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASW---------------------------DKTVKVWNLSNCKLRS---TLAGHTG--YVSTV-- 567 (694)
T ss_dssp EEEECSCSSSCEEEEEET---------------------------TSCEEEEETTTCCEEE---EECCCSS--CEEEE--
T ss_pred EEEEeCCCCcceEEEEeC---------------------------CCeEEEEECCCCcEEE---EEcCCCC--CEEEE--
Confidence 333333 12333221 1112111111100000 0001110 00000
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
. .+++ | ..++++..||.|+|||+.+++.+..+..| ..|.+++|+|++.+|++++.+ . |+
T Consensus 568 ~-----------~spd----g---~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~~-~-i~ 626 (694)
T 3dm0_A 568 A-----------VSPD----G---SLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATEH-G-IK 626 (694)
T ss_dssp E-----------ECTT----S---SEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEETT-E-EE
T ss_pred E-----------EeCC----C---CEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEcCC-C-EE
Confidence 0 0111 1 14567788999999999999998887654 689999999999999988765 3 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeec------------CC-----CcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQR------------GL-----TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r------------G~-----t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
|||+... ..+..+.. +. ....+.+++|||||++|++|+.||+|+||++.
T Consensus 627 iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 627 IWDLESK--------------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEETTTT--------------EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEECCCC--------------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999865 11112110 00 01127899999999999999999999999997
Q ss_pred CC
Q 004015 358 PL 359 (779)
Q Consensus 358 ~~ 359 (779)
.|
T Consensus 693 ~~ 694 (694)
T 3dm0_A 693 RY 694 (694)
T ss_dssp --
T ss_pred CC
Confidence 53
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.68 E-value=1.9e-15 Score=158.61 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=82.9
Q ss_pred cCCCCeEEEEEC------------------CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC
Q 004015 244 ADNVGMVIVRDI------------------VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 305 (779)
Q Consensus 244 ~~~dG~V~VwDl------------------~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~ 305 (779)
+..+|.|++||+ ..++++..+.+|..+|.+++|+|+|++|++++.||+ |+|||+..+
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~---- 234 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK---- 234 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT----
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCC----
Confidence 445788899995 467889999999999999999999999999999987 999999865
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..+..+. ++ ...|.+++|+||+++|+++ .|++|+||++....+
T Consensus 235 ----------~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~ 277 (372)
T 1k8k_C 235 ----------MAVATLA-SE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAG 277 (372)
T ss_dssp ----------TEEEEEE-CS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTT
T ss_pred ----------ceeEEEc-cC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCc
Confidence 3344443 22 3459999999999999888 999999999987333
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.68 E-value=2.3e-15 Score=160.66 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=134.4
Q ss_pred CCEEEEEECCCCcEEEEEeC----CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF----RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf----~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
.++|++||+++ ..+..+.. ...|.+++|+ +++|++ +.++.|++||+ +.+++.++..|...
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~----------- 206 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK----------- 206 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSC-----------
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCc-----------
Confidence 58899999986 55666653 3679999996 556655 67899999999 67888888776421
Q ss_pred cccceeecC--c-eeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 136 GYGPLAVGP--R-WLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 136 ~~~piAlgp--R-wLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
...+++.| + .|+.++.+ +.+|+ ....+....-+..++... .+.
T Consensus 207 -v~~~~~~~~~~~~l~s~~~d~~i~iwd-----------------------------~~~~~~~~~~~~~~~~~~--~v~ 254 (383)
T 3ei3_B 207 -VTHAEFNPRCDWLMATSSVDATVKLWD-----------------------------LRNIKDKNSYIAEMPHEK--PVN 254 (383)
T ss_dssp -EEEEEECSSCTTEEEEEETTSEEEEEE-----------------------------GGGCCSTTCEEEEEECSS--CEE
T ss_pred -EEEEEECCCCCCEEEEEeCCCEEEEEe-----------------------------CCCCCcccceEEEecCCC--ceE
Confidence 22355544 3 45544322 22221 111000000000011100 000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-----------------CCeEE
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-----------------SPISA 273 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt-----------------~~Isa 273 (779)
.. ...|. . + ..++.+..+|.|+|||+.+++.+..+..|. ..+.+
T Consensus 255 ~~--~~s~~----------~----~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 255 AA--YFNPT----------D----S---TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp EE--EECTT----------T----S---CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred EE--EEcCC----------C----C---CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence 00 00010 1 1 135567789999999999988877777664 34555
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 274 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 274 LaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
++|+|||++ +++.||+ |+|||+.++ ..+..+........+..++|+||+++||+++ ||+|+|
T Consensus 316 ~~~s~dg~~--s~s~d~~-i~iwd~~~~--------------~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 316 AGRYPDDQL--LLNDKRT-IDIYDANSG--------------GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EECBCCTTT--CTTCCCC-EEEEETTTC--------------CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred EEecCCccc--ccCCCCe-EEEEecCCC--------------ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 778888877 7788988 899999875 3455664322234577789999999999997 999999
Q ss_pred EecCC
Q 004015 354 FAINP 358 (779)
Q Consensus 354 wdl~~ 358 (779)
|+++.
T Consensus 378 w~~~~ 382 (383)
T 3ei3_B 378 WNRED 382 (383)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99974
No 99
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.68 E-value=1e-15 Score=159.49 Aligned_cols=115 Identities=12% Similarity=0.191 Sum_probs=89.0
Q ss_pred cccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+++..||+|+|||+.+++ .+..+.+|..+|.+++|+|+ |.+||+|+.||+ |+|||+.... . ..
T Consensus 71 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~-v~~wd~~~~~-----------~-~~ 137 (297)
T 2pm7_B 71 ASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK-VSVVEFKENG-----------T-TS 137 (297)
T ss_dssp EEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE-EEEEEBCSSS-----------C-BC
T ss_pred EEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc-EEEEEecCCC-----------c-ee
Confidence 345678999999999874 66788899999999999998 999999999997 8999997630 0 00
Q ss_pred EEEeecCCCcccEEEEEEcCC-------------CCEEEEEeCCCeEEEEecCCCCC----ceeeccCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDD-------------SNWIMISSSRGTSHLFAINPLGG----SVNFQPTDAN 371 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpD-------------g~~LAtgS~DGTVhIwdl~~~gg----~~~~~~H~~~ 371 (779)
...+ .++ ...|.+++|+|+ +++||+|+.|++|+|||+..... ...+.+|...
T Consensus 138 ~~~~-~~h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~ 206 (297)
T 2pm7_B 138 PIII-DAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (297)
T ss_dssp CEEE-ECC-SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred eeee-ecc-cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc
Confidence 1122 233 245999999997 57999999999999999987542 3356677543
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.66 E-value=7.5e-15 Score=152.81 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=137.7
Q ss_pred CEEEEEECCC-CcEE-EEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRS-QSYV-HMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~T-ge~V-~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+.+ ++.+ ..+. +...|.+|+|+ +++|++ +.++.|++||+.+.+.+... .|.. ..
T Consensus 64 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~------------~v 130 (368)
T 3mmy_A 64 NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDA------------PV 130 (368)
T ss_dssp SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSS------------CE
T ss_pred CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-cccC------------ce
Confidence 7799999998 6665 5555 47899999996 555555 67899999999999877644 3322 12
Q ss_pred cceee--cC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 138 GPLAV--GP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 138 ~piAl--gp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
..+++ .+ ++|+.++.+ +.+|+. ...+.+. -+ ......
T Consensus 131 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~-----------------------------~~~~~~~-~~-~~~~~~------ 173 (368)
T 3mmy_A 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDT-----------------------------RSSNPMM-VL-QLPERC------ 173 (368)
T ss_dssp EEEEEEECSSCEEEEEEETTSEEEEECS-----------------------------SCSSCSE-EE-ECSSCE------
T ss_pred EEEEEEeCCCCCEEEEccCCCcEEEEEC-----------------------------CCCcEEE-EE-ecCCCc------
Confidence 23443 33 345554322 222221 0000000 00 000000
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEE-ec-cCCCCeEEEEEcCCCCE----EEE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FR-AHKSPISALCFDPSGIL----LVT 285 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~-f~-aHt~~IsaLaFSPdG~l----LAT 285 (779)
++ .. .. ...++.+..++.+.+||+........ +. .+...+.++++.+++.. |++
T Consensus 174 ~~----------~~-~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 174 YC----------AD-VI---------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp EE----------EE-EE---------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred eE----------EE-ec---------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 00 00 00 01223455688999999987654332 22 45567778887776665 999
Q ss_pred EeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc-----------ccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 286 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 286 aS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~-----------a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
++.||. |+|||+..... ...++.+ .++.. ..|.+++|+||+++||+++.||+|+||
T Consensus 234 ~~~dg~-i~i~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 234 GSIEGR-VAIHYINPPNP-----------AKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp EETTSE-EEEEESSCSCH-----------HHHSEEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred ecCCCc-EEEEecCCCCc-----------cccceee-eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 999997 89999986410 0111222 12111 149999999999999999999999999
Q ss_pred ecCCCCCceeeccCCCC
Q 004015 355 AINPLGGSVNFQPTDAN 371 (779)
Q Consensus 355 dl~~~gg~~~~~~H~~~ 371 (779)
|+........+..|...
T Consensus 301 d~~~~~~~~~~~~~~~~ 317 (368)
T 3mmy_A 301 DKDARTKLKTSEQLDQP 317 (368)
T ss_dssp ETTTTEEEEECCCCSSC
T ss_pred ECCCCcEEEEecCCCCC
Confidence 99987666666777443
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-15 Score=179.44 Aligned_cols=232 Identities=13% Similarity=0.131 Sum_probs=144.1
Q ss_pred CEEEEEECC--CCcEEEEEe-CCCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~--Tge~V~tLk-f~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+. +++.+.++. +..+|.+|+|+ +++|++ +.|+.|++||+.+++ .+..+..|...
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~--------- 101 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS--------- 101 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC---------
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC---------
Confidence 679999998 567777776 47899999995 556655 678999999999987 55556554321
Q ss_pred cccccceeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 134 GIGYGPLAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 134 ~~~~~piAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
...++++| ++|+.++.+ +.+|+... .+... -....++..
T Consensus 102 ---V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~-----------------------------~~~~~-~~~~~~~~~-- 146 (753)
T 3jro_A 102 ---VNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-----------------------------NGTTS-PIIIDAHAI-- 146 (753)
T ss_dssp ---EEEEEECCGGGCSEEEEEETTSEEEEEECCS-----------------------------SSCCC-CEEEECCSS--
T ss_pred ---eEEEEECCCCCCCEEEEEeCCCcEEEEEeec-----------------------------CCCcc-eeEeecCCC--
Confidence 22344443 355555432 22332110 00000 000000000
Q ss_pred ccccccccccCCC---cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcCC-
Q 004015 208 KLSQYCSEFLPDS---QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS- 279 (779)
Q Consensus 208 ~ls~y~~~l~p~~---~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~----~~v~~f~aHt~~IsaLaFSPd- 279 (779)
.+... ...|.. .+.. ...++ ...++.+..+|.|+|||+.++ .++..+.+|..+|.+|+|+|+
T Consensus 147 ~v~~l--~~~p~~~~~~~~~-~~~~d-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 147 GVNSA--SWAPATIEEDGEH-NGTKE-------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp CEEEE--EECCCC----------CGG-------GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred ceEEE--EecCccccccccc-ccCCC-------CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC
Confidence 00000 000000 0000 00000 124567788999999999877 567888999999999999999
Q ss_pred --CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 280 --GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 280 --G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
|++|++++.||+ |+|||+..+.... ...+.. .......|.+++|+|||++|++++.||+|+||++.
T Consensus 217 ~~~~~l~s~s~Dg~-I~iwd~~~~~~~~---------~~~~~~--~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRT-CIIWTQDNEQGPW---------KKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSC-EEEEEESSSSSCC---------BCCBSS--SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCEEEEEecCCE-EEEecCCCCCCcc---------eeEEec--cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999999999998 8999998741000 001111 11123458999999999999999999999999998
Q ss_pred CCCC
Q 004015 358 PLGG 361 (779)
Q Consensus 358 ~~gg 361 (779)
..+.
T Consensus 285 ~~~~ 288 (753)
T 3jro_A 285 LEGK 288 (753)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 6543
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.66 E-value=5.1e-16 Score=164.66 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=74.8
Q ss_pred cCCCCeEEEEECC------------------CCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC
Q 004015 244 ADNVGMVIVRDIV------------------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 305 (779)
Q Consensus 244 ~~~dG~V~VwDl~------------------s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~ 305 (779)
+..+|.|+|||+. .++++..+ +|..+|.+++|+|+|++||+++.||+ |+|||+..+..
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~-- 239 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPEQ-- 239 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTTS--
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCCC--
Confidence 3456788888874 35577777 99999999999999999999999997 99999987510
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
....+..+ .++ ...|.+++|+||+++|++++.++.+ +|+....
T Consensus 240 --------~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~ 282 (377)
T 3dwl_C 240 --------PPRALITV-KLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGNES 282 (377)
T ss_dssp --------CEEECCCE-ECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCCC-
T ss_pred --------cceeeEee-cCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCC
Confidence 00112233 232 3459999999999999999877666 7877643
No 103
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.66 E-value=1.3e-15 Score=163.59 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=85.4
Q ss_pred ccccCCCCe-EEEEECCCCcEEEEec-c-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCc-cC------
Q 004015 241 FPDADNVGM-VIVRDIVSKNVIAQFR-A-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA-CD------ 310 (779)
Q Consensus 241 ~~s~~~dG~-V~VwDl~s~~~v~~f~-a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~-~~------ 310 (779)
++++..||+ |+|||+.+++++.+|. + |..+|.+|+|+|||++||+++.||+ |+|||+.......... ..
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccceeeccc
Confidence 455677898 9999999999999998 5 9999999999999999999999987 9999997641111000 00
Q ss_pred --CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 311 --AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 311 --~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
..-+ ...+.+..+. ......++|++|+++|++++.||++++|++...+
T Consensus 289 ~~~~~~-~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWS-LCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSC-SEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccc-eeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0000 0112222221 1123579999999999999999999999997643
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.65 E-value=1.4e-14 Score=159.06 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=84.1
Q ss_pred ccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 243 DADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 243 s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.+..+|.|+|||+++ ..++..+.+|..+|.+|+|+|+|. +||+++.||+ |+|||+...................++.
T Consensus 295 tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEE
Confidence 445689999999998 578899999999999999999995 7999999998 8999997630000000000000123333
Q ss_pred eecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCC
Q 004015 321 LQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINP 358 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~ 358 (779)
+ .++ ...|.+++|+|+++ +|++++.||+|+||++..
T Consensus 374 ~-~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 374 H-GGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp C-CCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred c-CCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3 343 34599999999999 899999999999999964
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.2e-15 Score=156.63 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=85.7
Q ss_pred ccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 243 DADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
++..||.|+|||+.+++ .+..+..|..+|.+|+|+|+ |.+|++++.||+ |+|||+... .....
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~------------~~~~~ 140 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK-VSVVEFKEN------------GTTSP 140 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE-EEEEECCTT------------SCCCE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc-EEEEecCCC------------Cceee
Confidence 44568999999999987 78888999999999999999 999999999997 899999864 01112
Q ss_pred EEeecCCCcccEEEEEEcC-------------CCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 319 YRLQRGLTNAVIQDISFSD-------------DSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSp-------------Dg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
..+. + +...|.+++|+| |+++|++++.||+|+|||+......
T Consensus 141 ~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 141 IIID-A-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp EEEE-C-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred EEec-C-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 2222 2 234599999999 7999999999999999999875543
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.64 E-value=4.2e-14 Score=150.68 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=130.5
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEE-EE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVA-IC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLa-Vs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|++||+.++++++.+.....+.+++|+ ++.|+ ++ .+++|++||+.+++++.++..+.. +
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------------v 76 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS---------------P 76 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS---------------E
T ss_pred CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC---------------c
Confidence 67999999999999999998889999996 55554 43 689999999999998888754310 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
..+++.. +|..+
T Consensus 77 -----~~~~~sp---------------------------dg~~l------------------------------------ 88 (391)
T 1l0q_A 77 -----QGVAVSP---------------------------DGKQV------------------------------------ 88 (391)
T ss_dssp -----EEEEECT---------------------------TSSEE------------------------------------
T ss_pred -----cceEECC---------------------------CCCEE------------------------------------
Confidence 1223321 11111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEeC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILL-VTASVQGHNINIFKI 298 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lL-ATaS~DGt~I~Vwdi 298 (779)
++.+..++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.+++ |++||+
T Consensus 89 ---------------------~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~ 145 (391)
T 1l0q_A 89 ---------------------YVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKT-VSVINT 145 (391)
T ss_dssp ---------------------EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE-EEEEET
T ss_pred ---------------------EEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCE-EEEEEC
Confidence 0112345889999999999988887664 68999999999977 67777876 999999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~L-AtgS~DGTVhIwdl~~~gg 361 (779)
.++ ..+..+..+ ..+.+++|+||+++| ++++.+++|++||+.....
T Consensus 146 ~~~--------------~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 146 VTK--------------AVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp TTT--------------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCC--------------cEEEEEecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 865 333444332 237899999999988 5677889999999987543
No 107
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.64 E-value=3.1e-14 Score=147.45 Aligned_cols=112 Identities=11% Similarity=0.150 Sum_probs=89.2
Q ss_pred cccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEEcCCC--CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPSG--ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~-v~~f~aHt~~IsaLaFSPdG--~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.++++..+|.+++||+..... ...+.+|...|.+++|++++ .++++++.|++ |++||+... .
T Consensus 142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~~--------------~ 206 (340)
T 4aow_A 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLANC--------------K 206 (340)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTTT--------------E
T ss_pred cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCCC--------------c
Confidence 356677899999999987654 34566999999999999875 57899999998 899999875 3
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
.+..+ .++ ...|.+|+|+||+++|++++.||+|+|||+........+..|
T Consensus 207 ~~~~~-~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 207 LKTNH-IGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp EEEEE-CCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred eeeEe-cCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 34444 343 345999999999999999999999999999887555555544
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.64 E-value=5.7e-15 Score=162.20 Aligned_cols=103 Identities=15% Similarity=0.281 Sum_probs=84.0
Q ss_pred cccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.+..+|.|+|||++++ +++..+.+|..+|++|+|+|+|. +||+|+.||+ |+|||+... ...
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~-------------~~~ 313 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNL-------------KLK 313 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCT-------------TSC
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCC-------------CCC
Confidence 34567899999999987 67888899999999999999997 7999999997 999999863 011
Q ss_pred EEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~g 360 (779)
+..+. ++ ...|.+|+|+|+++ +||+++.||+|+||++...+
T Consensus 314 ~~~~~-~h-~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 314 LHSFE-SH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp SEEEE-CC-SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred eEEee-cC-CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 22332 22 34599999999995 69999999999999998744
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.63 E-value=8e-14 Score=148.53 Aligned_cols=183 Identities=14% Similarity=0.158 Sum_probs=133.9
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-E-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-C-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+.+++.++.+.....|..++|+ ++.|++ + .++.|++||+.+++.+..+..+..
T Consensus 53 d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------------- 117 (391)
T 1l0q_A 53 SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS--------------- 117 (391)
T ss_dssp GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---------------
T ss_pred CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC---------------
Confidence 378999999999999999998899999996 566654 3 358999999999998877754311
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+ ..+++.. +|..+
T Consensus 118 ~-----~~~~~s~---------------------------dg~~l----------------------------------- 130 (391)
T 1l0q_A 118 P-----LGLALSP---------------------------DGKKL----------------------------------- 130 (391)
T ss_dssp E-----EEEEECT---------------------------TSSEE-----------------------------------
T ss_pred c-----ceEEECC---------------------------CCCEE-----------------------------------
Confidence 1 1122221 11111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILL-VTASVQGHNINIFK 297 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lL-ATaS~DGt~I~Vwd 297 (779)
++.+..++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.+|+ |++||
T Consensus 131 ----------------------~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~-v~~~d 186 (391)
T 1l0q_A 131 ----------------------YVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMS-ISVID 186 (391)
T ss_dssp ----------------------EEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTE-EEEEE
T ss_pred ----------------------EEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCE-EEEEE
Confidence 0122356899999999999998888774 56999999999987 56667765 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe---CCCeEEEEecCCCCCceeeccC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS---SRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS---~DGTVhIwdl~~~gg~~~~~~H 368 (779)
+..+ ..+..+.. ...+.+++|+||+++|++++ .+++|++||+........+..|
T Consensus 187 ~~~~--------------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 243 (391)
T 1l0q_A 187 TVTN--------------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243 (391)
T ss_dssp TTTT--------------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred CCCC--------------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC
Confidence 9865 23333322 23488999999999999998 6999999999876444444443
No 110
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.63 E-value=2.2e-15 Score=158.76 Aligned_cols=115 Identities=12% Similarity=0.222 Sum_probs=87.4
Q ss_pred cccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~--~~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+++..||+|+|||+.++ ..+..+.+|..+|.+|+|+|+ |.+||+|+.||+ |+|||+... ....
T Consensus 75 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~-i~lwd~~~~------------~~~~ 141 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA-ISLLTYTGE------------GQWE 141 (316)
T ss_dssp EEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC-EEEEEECSS------------SCEE
T ss_pred EEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC-EEEEecCCC------------CCcc
Confidence 34567899999999987 467788999999999999998 899999999998 899998753 0011
Q ss_pred EEEeecCCCcccEEEEEEcCC-----------------CCEEEEEeCCCeEEEEecCCCC---CceeeccCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDD-----------------SNWIMISSSRGTSHLFAINPLG---GSVNFQPTDA 370 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpD-----------------g~~LAtgS~DGTVhIwdl~~~g---g~~~~~~H~~ 370 (779)
+.....++ ...|.+++|+|+ +++||+++.|++|+||++...+ ....+.+|..
T Consensus 142 ~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 142 VKKINNAH-TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp ECCBTTSS-SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred eeeeeccc-cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 11122333 234889999998 4799999999999999996542 2234566754
No 111
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.6e-15 Score=180.00 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE--Eee---cCCCcccEEEE
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY--RLQ---RGLTNAVIQDI 333 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~--~l~---rG~t~a~I~sI 333 (779)
+++..+.+|.++|++|+||||| +||+|+.||+ |+|||+... ..++ .++ .|+ ...|++|
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t-v~lwd~~~~--------------~~~~~~~~~~~~~gh-~~~V~sv 628 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGS-LMLIDRRGP--------------AIIYMENIREISGAQ-SACVTCI 628 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSE-EEEEETTTT--------------EEEEEEEGGGTCSSC-CCCEEEE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc-EEEEECCCC--------------eEEEEeehhHhcccc-ccceEEE
Confidence 4678899999999999999999 9999999997 899998754 2233 231 133 3459999
Q ss_pred EEc-----CCC---CEEEEEeCCCeEEEEec---CCCCCceeeccC
Q 004015 334 SFS-----DDS---NWIMISSSRGTSHLFAI---NPLGGSVNFQPT 368 (779)
Q Consensus 334 aFS-----pDg---~~LAtgS~DGTVhIwdl---~~~gg~~~~~~H 368 (779)
+|| ||| ++|++|+.|++|++|++ ..+.....+.+|
T Consensus 629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~ 674 (902)
T 2oaj_A 629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI 674 (902)
T ss_dssp EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence 999 885 89999999999999999 555445566665
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.63 E-value=2.8e-14 Score=145.99 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=85.1
Q ss_pred ccCCCCeEEEEECCCC---------cEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCC----
Q 004015 243 DADNVGMVIVRDIVSK---------NVIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSS---- 307 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~---------~~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s---- 307 (779)
.+..||.|+|||+.++ +++..+..|..+|.+|+|+|+ |.+|++++.||+ |+|||+.....-..-
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI-LRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE-EEEEECSSTTCTTCCEEEE
T ss_pred EEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc-EEEecCCChHHhccccccc
Confidence 3456899999999887 668889999999999999999 999999999997 899998764210000
Q ss_pred ---------------------------c-----cC----------CCCceeEEEEeecCCCcccEEEEEEcCCC----CE
Q 004015 308 ---------------------------A-----CD----------AGTSYVHLYRLQRGLTNAVIQDISFSDDS----NW 341 (779)
Q Consensus 308 ---------------------------~-----~~----------~~~s~~~l~~l~rG~t~a~I~sIaFSpDg----~~ 341 (779)
. +. .......+..+ .++ ...|.+++|+|++ ++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PGH-KSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC-CCC-CSCEEEEEECCCSSCSSEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec-CCC-CcceeEEEECCCCCCcceE
Confidence 0 00 00001112222 222 3459999999998 89
Q ss_pred EEEEeCCCeEEEEecCCCCC
Q 004015 342 IMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 342 LAtgS~DGTVhIwdl~~~gg 361 (779)
|++++.||+|+|||+.....
T Consensus 233 l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 233 IATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEEEETTSCEEEEEEEECC-
T ss_pred EEEEcCCCeEEEEeCCCCcC
Confidence 99999999999999987543
No 113
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.62 E-value=5.8e-14 Score=164.19 Aligned_cols=221 Identities=14% Similarity=0.127 Sum_probs=146.5
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCC-cEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~-e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
++|++||+.+++.+.++. +...|.+++|+ +++|++ +.++.|++||+.+. .+...+..|... ..
T Consensus 77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~------------v~ 144 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF------------VM 144 (814)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC------------EE
T ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc------------EE
Confidence 779999999999999998 57889999996 455555 67889999999987 666677665321 22
Q ss_pred ceeecC---ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 139 PLAVGP---RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 139 piAlgp---RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
.++++| .+|+.++.+ +.+|+.. ..+... ....+... .+. +
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~-----------------------------~~~~~~--~~~~~~~~--~v~--~ 189 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLG-----------------------------QSTPNF--TLTTGQER--GVN--Y 189 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETT-----------------------------CSSCSE--EEECCCTT--CCC--E
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECC-----------------------------CCccee--EEecCCCC--CEE--E
Confidence 344443 455555322 2222210 000000 00000000 000 0
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
-...|. ++ ...++.+..+|.|++||+.+++++..+.+|..+|++++|+|+|.+|++++.||+ |
T Consensus 190 ~~~~~~---------~~-------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v 252 (814)
T 3mkq_A 190 VDYYPL---------PD-------KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-L 252 (814)
T ss_dssp EEECCS---------TT-------CCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-E
T ss_pred EEEEEC---------CC-------CCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-E
Confidence 000000 00 113556778999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC--EEEEEeCCCeEEEEecCCCCCceee
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN--WIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~--~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+|||+.++ ..+..+... ...|++++|+|+++ +++++ .|+.+.+|++........+
T Consensus 253 ~vwd~~~~--------------~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 309 (814)
T 3mkq_A 253 KIWNSSTY--------------KVEKTLNVG--LERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSL 309 (814)
T ss_dssp EEEETTTC--------------SEEEEECCS--SSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEE
T ss_pred EEEECCCC--------------cEEEEeecC--CCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEE
Confidence 99999865 344454332 24599999999998 45555 4677889998765544444
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.60 E-value=1.6e-14 Score=157.24 Aligned_cols=237 Identities=9% Similarity=0.021 Sum_probs=120.8
Q ss_pred CCCEEEEEECCCCcEEEEEe------CCCCEEEEEEc----------CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcc
Q 004015 62 VPTVVHFYSLRSQSYVHMLK------FRSPIYSVRCS----------SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIV 124 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLk------f~s~V~sV~~s----------~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~ 124 (779)
..++|+|||+++++...... +...|.+|+|+ +++||. +.|++|+|||+.+..++..+..+..+
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 35889999999998765322 36789999995 356665 78999999999998888887766432
Q ss_pred cCCCCCCCccccccceeecC---ceeEeeCCC--ceecCC--CccCCcccccccccccccCCCcceeeeecccccchhce
Q 004015 125 MGHPSAGGIGIGYGPLAVGP---RWLAYSGSP--VVVSND--GRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 197 (779)
Q Consensus 125 ~~~p~s~~~~~~~~piAlgp---RwLAyas~~--~i~~~s--grvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~G 197 (779)
. ..+++.| +.|+.++.+ +.+|+. +..... +... ... .......... ..+...
T Consensus 189 v------------~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~-~~~~----~~~-~~~~~~s~~~---~~~~~~ 247 (393)
T 4gq1_A 189 G------------ISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE-NSQT----ELV-KNPWLLTLNT---LPLVNT 247 (393)
T ss_dssp E------------EEEEEETTEEEEEEEEETTSEEEEEETTCCC---------------C-SCCCSEEEES---GGGC--
T ss_pred c------------EEEEECCCCCceEEecCCCCEEEEEECCCCccccc-cccc----CCc-ccceEEeccc---ccceee
Confidence 1 1345544 456666443 334432 110000 0000 000 0000000000 000000
Q ss_pred eeecCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 004015 198 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 277 (779)
Q Consensus 198 l~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFS 277 (779)
....+... ....+....++ ...++.+..++.|+|||+..+.....+..|...+..+.|.
T Consensus 248 ~~~~~~~~--------------~v~~v~~~~~d-------g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 248 CHSSGIAS--------------SLANVRWIGSD-------GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ----CCSS--------------SCSEEEEETTT-------TCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred eecccccc--------------cceeeeeecCC-------CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 00000000 00000000011 1135667789999999999888777777777766665555
Q ss_pred C--------------------CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 278 P--------------------SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 278 P--------------------dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
| ++.++++++.||+ |+|||+.++ ..+..+..+ ...|.+++|||
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~--------------~~~~~~~~~--~~~V~svafsp 369 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-IQLINTYEK--------------DSNSIPIQL--GMPIVDFCWHQ 369 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-EEEEETTCT--------------TCCEEEEEC--SSCEEEEEECT
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCE-EEEEECCCC--------------cEEEEecCC--CCcEEEEEEcC
Confidence 4 3447788889987 999999875 111222222 23599999999
Q ss_pred CCCEEEEEeCCCeEEEEecCC
Q 004015 338 DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
||++||+++.+| +.||++..
T Consensus 370 dG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 370 DGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp TSSEEEEEESSE-EEEEEEGG
T ss_pred CCCEEEEEeCCC-eEEEEEeC
Confidence 999999998766 66666643
No 115
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.8e-13 Score=139.66 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=139.5
Q ss_pred cEEEEEeC-CCCEEEEEEc-CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecC--ceeEe
Q 004015 75 SYVHMLKF-RSPIYSVRCS-SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAY 149 (779)
Q Consensus 75 e~V~tLkf-~s~V~sV~~s-~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAy 149 (779)
+.+++++. ...|.+|+|. +++|++ +.++.|++||+.+.+....+..+... ...++++| ++|+.
T Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~------------v~~~~~~~~~~~l~~ 76 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF------------LNSVCYDSEKELLLF 76 (313)
T ss_dssp EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSC------------EEEEEEETTTTEEEE
T ss_pred HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCcc------------EEEEEECCCCCEEEE
Confidence 66677764 6789999994 555554 67899999999999988888776321 22344444 55665
Q ss_pred eCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccc
Q 004015 150 SGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSA 227 (779)
Q Consensus 150 as~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa 227 (779)
++.+ +..|+.-.. ..+..+.. ..++. ..+...
T Consensus 77 ~~~dg~i~~~~~~~~---------------~~~~~~~~--------------~~~~~-----------------~~i~~~ 110 (313)
T 3odt_A 77 GGKDTMINGVPLFAT---------------SGEDPLYT--------------LIGHQ-----------------GNVCSL 110 (313)
T ss_dssp EETTSCEEEEETTCC---------------TTSCC-CE--------------ECCCS-----------------SCEEEE
T ss_pred ecCCCeEEEEEeeec---------------CCCCcccc--------------hhhcc-----------------cCEEEE
Confidence 5432 111110000 00000000 00000 000000
Q ss_pred cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCC
Q 004015 228 IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTS 306 (779)
Q Consensus 228 ~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~ 306 (779)
... ...++.+..+|.|++|| .++.+..+..|..+|.+++|+| ++.+|++++.||. |++||...
T Consensus 111 ~~~-------~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~------ 174 (313)
T 3odt_A 111 SFQ-------DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT-IKLWQNDK------ 174 (313)
T ss_dssp EEE-------TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-EEEEETTE------
T ss_pred Eec-------CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC-EEEEecCc------
Confidence 000 12356677899999999 7788899999999999999998 9999999999998 89999432
Q ss_pred CccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 307 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 307 s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
.+..+ .+.....|.+++|+|+++ |++++.||+|+|||+........+..|...
T Consensus 175 ----------~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 227 (313)
T 3odt_A 175 ----------VIKTF-SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESF 227 (313)
T ss_dssp ----------EEEEE-CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ----------eEEEE-eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCce
Confidence 23333 332345699999999999 999999999999999987766677777543
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.60 E-value=8.4e-14 Score=152.04 Aligned_cols=114 Identities=6% Similarity=0.114 Sum_probs=84.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCC---CCeEEEEEcCCCCEE------------EEEeCCCCEEEEEeCCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHK---SPISALCFDPSGILL------------VTASVQGHNINIFKIIPGILG 304 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt---~~IsaLaFSPdG~lL------------ATaS~DGt~I~Vwdi~~~~~g 304 (779)
.++++..|++|+|||+.+++++.+|.+|. ..+.+++|+|||++| ++|+.|++ |++||..++
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tg--- 270 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTT--- 270 (356)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTT---
T ss_pred eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCC---
Confidence 35667889999999999999999999754 468888999999987 56778876 899998765
Q ss_pred CCCccCCCCceeEEEEe----ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 305 TSSACDAGTSYVHLYRL----QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~l----~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
..+..+ ..|+.. .+.+.+|+ +.++|+++.|+||+|||+.+.....++.+|.+.
T Consensus 271 -----------k~l~v~~~~~p~Gh~~-~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 271 -----------LSVGVMLYCLPPGQAG-RFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ 327 (356)
T ss_dssp -----------EEEEEEEECCCTTCCC-CEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred -----------EEEEEEEeeccCCCcc-eeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence 232222 234332 24455555 889999999999999999998878888888543
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.2e-14 Score=165.42 Aligned_cols=225 Identities=12% Similarity=0.108 Sum_probs=130.1
Q ss_pred cccCCCCeEEEEECCCCc-------EEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 242 PDADNVGMVIVRDIVSKN-------VIAQF----RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~-------~v~~f----~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
+.+..||+|+|||+.++. .+.+| .+|...|.+++|+||| ||+++.|++ |++||+....
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~-------- 213 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASS-------- 213 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSS--------
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCc--------
Confidence 345678999999999885 36777 6788899999999999 788888887 8999997640
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCccCCCcCCcceecCCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNL 390 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s 390 (779)
......++..++ ...|.+++|+ |++||+++ +++|++|++..........+|...+. .+.++.
T Consensus 214 ---~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~---------~va~~~-- 275 (588)
T 2j04_A 214 ---HQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH---------IIPLNH-- 275 (588)
T ss_dssp ---SCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC---------EEEETT--
T ss_pred ---cccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE---------EEEeee--
Confidence 001122343333 3459999999 68999997 69999999986433222236754443 123311
Q ss_pred CCCCCCCCccccCCCCeeeeeeEEeecCCCCCCCcccCccccccCCcCCCCCceeeeeeccCCCCcccccCCcccccccE
Q 004015 391 GLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHL 470 (779)
Q Consensus 391 ~l~~~~~~~l~~~~pp~~ls~v~ri~~~~~~~~~~v~~~a~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 470 (779)
.++.+.|.....- -. |+...+ ..+.+++|....-. .-.....+-.++.....++ ...-+=
T Consensus 276 ---s~d~~~La~a~ed----G~-klw~~d--------~~~~spd~~l~a~~-d~~v~lW~~~g~~l~~~~~---~~~I~~ 335 (588)
T 2j04_A 276 ---EKESTILLMSNKT----SY-KVLLED--------ELHVTADNIIAPYL-EKKFKKWSTIWNEFNNYET---TLVIHG 335 (588)
T ss_dssp ---CSSCEEEEECSSC----EE-EEEESS--------SEEEECCCSSHHHH-HHHHHHTTTTTTSSSSSCC---EEEEEE
T ss_pred ---CCCCCEEEEEcCC----CC-EEEeec--------cEEECCCceEEEEc-CCEEEEEECCCCceeeecc---ceEEEE
Confidence 1233333211100 00 122211 12344444331100 0001111221111000001 122233
Q ss_pred EEEccCccEEE--EeeeeccCCCccCCcCCCCCCCCCCCCCCceEEEeee-ccccccccC
Q 004015 471 LVFSPSGCMIQ--YALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAI-QKWNICQKQ 527 (779)
Q Consensus 471 ~V~~p~G~liq--y~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Vep~-~~Wdvcr~~ 527 (779)
+.++|+|+++- |++ |.. ..-|.-.-+.++++...|. .+|.+..+.
T Consensus 336 va~SPdG~~lA~~~~i-~~~-----------~~~y~i~s~~~~~i~f~pL~~~w~~~~~~ 383 (588)
T 2j04_A 336 ISLSPDGYSIAIVYDM-ERV-----------AFKYKIASEQSFNIMFAPLYHTWTISERA 383 (588)
T ss_dssp EEECTTSSEEEEEEEE-ECS-----------SCCCCCSSSCCEEEEEEESSSCCCCCTTC
T ss_pred EEECCCCCEEEEEEec-cCc-----------eeEEeeccceEEEEEEEEccchhccCCCc
Confidence 67899997765 998 772 4455556778899999998 788887443
No 118
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.59 E-value=2.1e-14 Score=149.18 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=126.7
Q ss_pred CCEEEEEECCC---------CcEEEEEeCCCCEEEEEEcCcEEE-EEeCCeEEEEeCCC-CcEEEEEecCCcccCCCCCC
Q 004015 63 PTVVHFYSLRS---------QSYVHMLKFRSPIYSVRCSSRVVA-ICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 63 ~~tVrIWDL~T---------ge~V~tLkf~s~V~sV~~s~rlLa-Vs~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~ 131 (779)
.++|++||+++ +++++++.+...|.+++|++..++ .+.++.|++||+.+ ++.......... .
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~--- 193 (342)
T 1yfq_A 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL----K--- 193 (342)
T ss_dssp TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC----S---
T ss_pred CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCC----C---
Confidence 57899999998 888888888899999999855455 46788999999998 654222211100 0
Q ss_pred CccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 132 ~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
.++ +.+++. |. ++.
T Consensus 194 ------~~i----~~i~~~-------------~~-------------~~~------------------------------ 207 (342)
T 1yfq_A 194 ------YQI----RDVALL-------------PK-------------EQE------------------------------ 207 (342)
T ss_dssp ------SCE----EEEEEC-------------SG-------------GGC------------------------------
T ss_pred ------Cce----eEEEEC-------------CC-------------CCC------------------------------
Confidence 000 111221 00 000
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC------cEEEEeccCCC---------CeEEEEE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFRAHKS---------PISALCF 276 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~------~~v~~f~aHt~---------~IsaLaF 276 (779)
.++.+..+|.|+|||+... +.+..|++|.. +|.+++|
T Consensus 208 ----------------------------~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 208 ----------------------------GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp ----------------------------EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred ----------------------------EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence 1223456789999999887 78889998866 9999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCe-EEEEe
Q 004015 277 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT-SHLFA 355 (779)
Q Consensus 277 SPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGT-VhIwd 355 (779)
+|+|++|++++.||+ |+|||+..+ ..+..+ .+++...|.+++ ||+++|++++.||+ .+.|.
T Consensus 260 s~~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 260 SPRHKFLYTAGSDGI-ISCWNLQTR--------------KKIKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTTCCEEEEETTSC-EEEEETTTT--------------EEEEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cCCCCEEEEecCCce-EEEEcCccH--------------hHhhhh-hcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 999999999999998 899999875 445555 343245699999 99999999999999 66555
Q ss_pred c
Q 004015 356 I 356 (779)
Q Consensus 356 l 356 (779)
.
T Consensus 322 ~ 322 (342)
T 1yfq_A 322 I 322 (342)
T ss_dssp S
T ss_pred c
Confidence 4
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.59 E-value=3.8e-13 Score=145.27 Aligned_cols=173 Identities=10% Similarity=0.117 Sum_probs=128.0
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEe---------CCeEEEEeCCCCcEEEEEecCCcccCCCCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ---------AAQVHCFDAATLEIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~---------d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~ 131 (779)
.++|++||+++++.+..+.....+..++++ +++|+++. +++|++||+.+++.+..+... .
T Consensus 233 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~-------- 303 (433)
T 3bws_A 233 SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-G-------- 303 (433)
T ss_dssp TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-E--------
T ss_pred CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-C--------
Confidence 368999999999999999888889999996 55666543 679999999998876665211 0
Q ss_pred CccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 132 ~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
.++.+++.. +|..+
T Consensus 304 -----------~~~~~~~~~---------------------------~g~~l---------------------------- 317 (433)
T 3bws_A 304 -----------NKRHIVSGN---------------------------TENKI---------------------------- 317 (433)
T ss_dssp -----------CEEEEEECS---------------------------STTEE----------------------------
T ss_pred -----------CcceEEECC---------------------------CCCEE----------------------------
Confidence 011223321 11110
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV--- 288 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~--- 288 (779)
++.+..+|.|++||+.+++++..+. |...+.+++|+|+|++|++++.
T Consensus 318 -----------------------------~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 367 (433)
T 3bws_A 318 -----------------------------YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPN 367 (433)
T ss_dssp -----------------------------EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCC
T ss_pred -----------------------------EEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCC
Confidence 1122456899999999999888876 6788999999999999988887
Q ss_pred ------------CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEe
Q 004015 289 ------------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFA 355 (779)
Q Consensus 289 ------------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwd 355 (779)
||+ |.+||+.++ ..+..+..+ ..+.+++|+|||++|++++. |++|+||+
T Consensus 368 ~~~~~~~~~g~~dg~-v~~~d~~~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 368 HPTEGYLKKGLVLGK-VYVIDTTTD--------------TVKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp CTTTCTTSCCSSCCE-EEEEETTTT--------------EEEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred ccccccccccccceE-EEEEECCCC--------------cEEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 355 999999765 333444322 35899999999999998875 99999999
Q ss_pred cCC
Q 004015 356 INP 358 (779)
Q Consensus 356 l~~ 358 (779)
+..
T Consensus 430 ~~~ 432 (433)
T 3bws_A 430 RDG 432 (433)
T ss_dssp ETT
T ss_pred ecC
Confidence 864
No 120
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.59 E-value=6.8e-14 Score=152.68 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=131.1
Q ss_pred EEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecC--ceeEeeCCC--ceecCCCcc
Q 004015 88 SVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRV 162 (779)
Q Consensus 88 sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~--~i~~~sgrv 162 (779)
-|.|+ .++|||++|++|+|||+.|++++..+..+... -.+..++++| ++||.++.+ +.+|+
T Consensus 110 ~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~----------~~V~sv~fspdg~~lasgs~Dg~v~iWd---- 175 (420)
T 4gga_A 110 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPG----------EYISSVAWIKEGNYLAVGTSSAEVQLWD---- 175 (420)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTT----------CCEEEEEECTTSSEEEEEETTSCEEEEE----
T ss_pred eEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCC----------CcEEEEEECCCCCEEEEEECCCeEEEEE----
Confidence 47775 67999999999999999999998887643210 0133466655 677766432 22332
Q ss_pred CCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCCCccCCccc
Q 004015 163 NPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP 242 (779)
Q Consensus 163 spq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~ 242 (779)
....+.+.. ..++... +..+..+ ...++
T Consensus 176 -------------------------~~~~~~~~~---~~~h~~~------v~~~s~~------------------~~~l~ 203 (420)
T 4gga_A 176 -------------------------VQQQKRLRN---MTSHSAR------VGSLSWN------------------SYILS 203 (420)
T ss_dssp -------------------------TTTTEEEEE---ECCCSSC------EEEEEEE------------------TTEEE
T ss_pred -------------------------cCCCcEEEE---EeCCCCc------eEEEeeC------------------CCEEE
Confidence 111111100 0011000 0000000 01345
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 243 DADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++..++.+++||.... ..+..+.+|...+..+.|+|+|++|++++.||. |+||++..+... ...+...
T Consensus 204 sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~-v~i~~~~~~~~~----------~~~~~~~ 272 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL-VNVWPSAPGEGG----------WVPLQTF 272 (420)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEESSCCSSC----------SCCSEEE
T ss_pred EEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecccc-ceEEeecccccc----------ceeeeee
Confidence 6778999999999864 567889999999999999999999999999998 899999865110 1111222
Q ss_pred ecCCCcccEEEEEEcCCCC-EEEE--EeCCCeEEEEecCCCCCceeeccCC
Q 004015 322 QRGLTNAVIQDISFSDDSN-WIMI--SSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~-~LAt--gS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
.+ ..+.|.+++|+|++. ++++ |+.|++|+|||+.+......+..|.
T Consensus 273 -~~-~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~ 321 (420)
T 4gga_A 273 -TQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 321 (420)
T ss_dssp -CC-CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS
T ss_pred -cc-cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc
Confidence 22 234599999999665 5554 4579999999999876666666553
No 121
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.55 E-value=1.1e-12 Score=134.44 Aligned_cols=132 Identities=11% Similarity=0.240 Sum_probs=93.7
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCC----------C--
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTS----------S-- 307 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~----------s-- 307 (779)
++.+..++.+++|+.... ..+..+.+|...+.+++|+++|++|++++.||+ |+|||+.++..... .
T Consensus 122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~ 200 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL-VNVWPSAPGEGGWVPLQTFTQHQGAVK 200 (318)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEESSCBTTBSCCSEEECCCCSCEE
T ss_pred EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc-eeEEECCCCcccccceeeecccCCceE
Confidence 456678899999998875 567788999999999999999999999999998 89999976421000 0
Q ss_pred -----c---------cCCCCceeEEEEeecC------CCcccEEEEEEcCCCCEEEEEe--CCCeEEEEecCCCCCceee
Q 004015 308 -----A---------CDAGTSYVHLYRLQRG------LTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 308 -----~---------~~~~~s~~~l~~l~rG------~t~a~I~sIaFSpDg~~LAtgS--~DGTVhIwdl~~~gg~~~~ 365 (779)
. .+.......++....+ .....|..++|+|+++++++++ .|++|+|||+.+......+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l 280 (318)
T 4ggc_A 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 280 (318)
T ss_dssp EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred EEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 0 0000001112221111 1123478999999999988765 7999999999988777788
Q ss_pred ccCCCCCC
Q 004015 366 QPTDANFT 373 (779)
Q Consensus 366 ~~H~~~~~ 373 (779)
++|...+.
T Consensus 281 ~gH~~~V~ 288 (318)
T 4ggc_A 281 KGHTSRVL 288 (318)
T ss_dssp CCCSSCEE
T ss_pred cCCCCCEE
Confidence 88865443
No 122
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.54 E-value=1.3e-13 Score=151.31 Aligned_cols=106 Identities=13% Similarity=0.206 Sum_probs=80.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~a--Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++++.||+|+|||+.++........ +...+.+++|+|+|++||+|+.||+ |+|||+... .+.
T Consensus 181 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~-i~~wd~~~~---------------~~~ 244 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN-VILLNMDGK---------------ELW 244 (435)
T ss_dssp EEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB-EEEEESSSC---------------BCC
T ss_pred EEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc-EeeeccCcc---------------eeE
Confidence 3456789999999987654433333 3456889999999999999999998 899998642 122
Q ss_pred EeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCCceee
Q 004015 320 RLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.+ +++ ...|.+|+|+|+++ +|++++.|++|+|||+........+
T Consensus 245 ~~-~~h-~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~ 289 (435)
T 4e54_B 245 NL-RMH-KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289 (435)
T ss_dssp CS-BCC-SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred EE-ecc-cceEEeeeecCCCceEEEEecCcceeeEEecccccccceE
Confidence 33 233 34599999999987 7889999999999999876655443
No 123
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.49 E-value=3.9e-12 Score=127.55 Aligned_cols=221 Identities=12% Similarity=0.079 Sum_probs=135.6
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCC-CcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..+|++||+.+++....+.+...|.+++|+ +++|+++.++.|++||+.+ ++....+..+.. .....
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~~ 89 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT-----------ICNND 89 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC-----------CBCSC
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc-----------ccccc
Confidence 478999999999988878888999999996 7788888899999999999 776544433210 01223
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
++++| ++|++..... ++ ....|..+..... ...+.... . .+.-.+.
T Consensus 90 ~~~spdg~~l~~~~~~~------------------------~~-~~~l~~~~~~~~~---~~~~~~~~--~--~~~~~~s 137 (297)
T 2ojh_A 90 HGISPDGALYAISDKVE------------------------FG-KSAIYLLPSTGGT---PRLMTKNL--P--SYWHGWS 137 (297)
T ss_dssp CEECTTSSEEEEEECTT------------------------TS-SCEEEEEETTCCC---CEECCSSS--S--EEEEEEC
T ss_pred eEECCCCCEEEEEEeCC------------------------CC-cceEEEEECCCCc---eEEeecCC--C--ccceEEC
Confidence 45554 6777764110 00 0000111100000 00000000 0 0000111
Q ss_pred CCCcCccccccCCCCCCCccCCccc-ccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFP-DADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~-s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~ 294 (779)
|++ ..++ ....++.++||++.. ......+..|...+.+++|+|+|++|+.++. ++. ++
T Consensus 138 pdg------------------~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~ 198 (297)
T 2ojh_A 138 PDG------------------KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQ 198 (297)
T ss_dssp TTS------------------SEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-CE
T ss_pred CCC------------------CEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCC-cc
Confidence 111 0122 345678888988532 2345677788899999999999998887664 766 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-----------CeEEEEecCCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-----------GTSHLFAINPLG 360 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-----------GTVhIwdl~~~g 360 (779)
||++... + ..+..+... ...+.+++|+|||++|++++.+ +.+++|++....
T Consensus 199 i~~~~~~--~-----------~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 199 IWRVRVD--G-----------SSVERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp EEEEETT--S-----------SCEEECCCC--SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred EEEECCC--C-----------CCcEEEecC--CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 9988632 0 112233221 2358899999999999999876 569999997643
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.49 E-value=3.7e-12 Score=137.51 Aligned_cols=187 Identities=11% Similarity=0.065 Sum_probs=128.9
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEE-EEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVV-AIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlL-aVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|++||+++++.+.++.. ...+..++|+ ++.+ +++ .++.|++||+.+++.+..+.... ..
T Consensus 190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~ 256 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-------------LP 256 (433)
T ss_dssp GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-------------EE
T ss_pred CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-------------Cc
Confidence 47899999999999999975 6789999996 4555 444 57899999999998877664321 01
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
..+++.. +|..+.......
T Consensus 257 -------~~~~~~~---------------------------~g~~l~~~~~~~--------------------------- 275 (433)
T 3bws_A 257 -------RGLLLSK---------------------------DGKELYIAQFSA--------------------------- 275 (433)
T ss_dssp -------EEEEECT---------------------------TSSEEEEEEEES---------------------------
T ss_pred -------eEEEEcC---------------------------CCCEEEEEECCC---------------------------
Confidence 1122221 121111000000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIF 296 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vw 296 (779)
+ .+ ...+|.|++||+.+++.+..+ .|...+.+++|+|+|+ ++++++.+++ |++|
T Consensus 276 -----------------~----~~--~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~ 330 (433)
T 3bws_A 276 -----------------S----NQ--ESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSK-IEVY 330 (433)
T ss_dssp -----------------C----TT--CSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTE-EEEE
T ss_pred -----------------C----cc--ccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCE-EEEE
Confidence 0 00 025789999999998877665 5666899999999997 4566677876 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC---------------CCeEEEEecCCCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS---------------RGTSHLFAINPLGG 361 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~---------------DGTVhIwdl~~~gg 361 (779)
|+..+ ..+..+.. ...+.+++|+||+++|++++. ||+|++||+.+...
T Consensus 331 d~~~~--------------~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 331 DLKEK--------------KVQKSIPV---FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp ETTTT--------------EEEEEEEC---SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred ECCCC--------------cEEEEecC---CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 99865 33334432 234899999999999999887 57999999987543
Q ss_pred ceee
Q 004015 362 SVNF 365 (779)
Q Consensus 362 ~~~~ 365 (779)
...+
T Consensus 394 ~~~~ 397 (433)
T 3bws_A 394 KEFW 397 (433)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 3333
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.47 E-value=8.1e-13 Score=156.54 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=87.0
Q ss_pred cccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCCEEEEEeCCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDP-------------SGILLVTASVQGHNINIFKIIPGILG 304 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~--~~v~~f~aHt~~IsaLaFSP-------------dG~lLATaS~DGt~I~Vwdi~~~~~g 304 (779)
.++.+..+|.|+|||+.++ .....+.+|...|.+++|+| +|.+|++|+.||+ |+|||+..+.
T Consensus 115 ~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~-- 191 (753)
T 3jro_A 115 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDA-- 191 (753)
T ss_dssp EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC-EEEEEEETTT--
T ss_pred EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe-EEEEeccCCc--
Confidence 3566788999999999987 34556789999999999999 5999999999998 8999997640
Q ss_pred CCCccCCCCceeEEEEeecCCCcccEEEEEEcCC---CCEEEEEeCCCeEEEEecCCCC
Q 004015 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD---SNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD---g~~LAtgS~DGTVhIwdl~~~g 360 (779)
.....+..+ .++ ...|.+++|+|+ +++|++++.||+|+||++....
T Consensus 192 --------~~~~~~~~~-~~h-~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 192 --------QTYVLESTL-EGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp --------TEEEEEEEE-CCC-SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred --------ccceeeeee-cCC-CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 011233333 333 346999999999 9999999999999999998754
No 126
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.47 E-value=2.3e-11 Score=125.35 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=138.9
Q ss_pred CEEEEEECCCCcEEEEEeCCC------CEEEEEEc--CcEEEEE-------------eCCeEEEEeCCCCcEEEEEecCC
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS------PIYSVRCS--SRVVAIC-------------QAAQVHCFDAATLEIEYAILTNP 122 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s------~V~sV~~s--~rlLaVs-------------~d~~I~IwD~~T~e~l~tl~t~p 122 (779)
+.|.+||+.+++.+.++.+.. .+..++++ ++.|+++ .++.|++||+.+++.+..+....
T Consensus 56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 135 (337)
T 1pby_B 56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR 135 (337)
T ss_dssp TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS
T ss_pred CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC
Confidence 679999999999999998754 67788996 6677766 46899999999999887775421
Q ss_pred cccCCCCCCCccccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeee
Q 004015 123 IVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 200 (779)
Q Consensus 123 ~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~ 200 (779)
....++++| ++|++++..+.+++... +..+... .
T Consensus 136 -------------~~~~~~~s~dg~~l~~~~~~i~~~d~~~------------------~~~~~~~-------------~ 171 (337)
T 1pby_B 136 -------------QITMLAWARDGSKLYGLGRDLHVMDPEA------------------GTLVEDK-------------P 171 (337)
T ss_dssp -------------SCCCEEECTTSSCEEEESSSEEEEETTT------------------TEEEEEE-------------C
T ss_pred -------------CcceeEECCCCCEEEEeCCeEEEEECCC------------------CcEeeee-------------e
Confidence 112345554 66776644444332110 0000000 0
Q ss_pred cCCccccccccccccccCCCcCccccccCCCCCCCcc----------C-CcccccCCCCeEEEEECCCCcEE-EEeccCC
Q 004015 201 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTV----------N-GHFPDADNVGMVIVRDIVSKNVI-AQFRAHK 268 (779)
Q Consensus 201 lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v----------~-g~~~s~~~dG~V~VwDl~s~~~v-~~f~aHt 268 (779)
.+... ..+ ...|++.. +...... .+.+ . .... ......|.+||+.+++.. ..+..|.
T Consensus 172 ~~~~~-~~~-----~~s~dg~~-l~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d~~~~~~~~~~~~~~~ 240 (337)
T 1pby_B 172 IQSWE-AET-----YAQPDVLA-VWNQHES---SGVMATPFYTARKDIDPADP-TAYRTGLLTMDLETGEMAMREVRIMD 240 (337)
T ss_dssp STTTT-TTT-----BCCCBCCC-CCCCCTT---TTEEEEEEEEEBTTSCTTSG-GGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred ccccC-CCc-----eeCCCccE-EeeeccC---CCceeeeeeccccccccccc-cccccceEEEeCCCCCceEeecCCCC
Confidence 00000 000 00011000 0000000 0000 0 0000 011226899999998764 3345777
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..+.+++|+|||++|+++ +++ |.+||+..+ ..+..+..+ ..+.+++|+|||++|++++.+
T Consensus 241 ~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA--YNV-LESFDLEKN--------------ASIKRVPLP---HSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp SCEEEEEECTTSSEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---SCCCEEEECTTSCEEEEESBS
T ss_pred CceeeEEECCCCCEEEEe--CCe-EEEEECCCC--------------cCcceecCC---CceeeEEECCCCCEEEEEcCC
Confidence 789999999999999988 455 999998765 333333322 247899999999999999999
Q ss_pred CeEEEEecCCCCCceeecc
Q 004015 349 GTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 349 GTVhIwdl~~~gg~~~~~~ 367 (779)
++|+|||+.+......+..
T Consensus 301 ~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 301 GDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEECcCCcEEEEEEc
Confidence 9999999988755555543
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.45 E-value=7.8e-12 Score=137.64 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=76.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-G-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.+||+.+++. ..+..|...+.+++|||||++|++++.+ | ..|.+||+..+ . +..+..+
T Consensus 292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--------------~-~~~l~~~-- 353 (415)
T 2hqs_A 292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--------------G-VQVLSST-- 353 (415)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--------------C-EEECCCS--
T ss_pred EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC--------------C-EEEecCC--
Confidence 678889988764 4566777889999999999999988865 2 35899998865 1 1233222
Q ss_pred cccEEEEEEcCCCCEEEEEeCCC---eEEEEecCCCCCceeeccCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRG---TSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~~gg~~~~~~H~~ 370 (779)
..+.+++|+|||++|++++.|+ .+++|++. .+....+..|..
T Consensus 354 -~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~ 398 (415)
T 2hqs_A 354 -FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG 398 (415)
T ss_dssp -SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSS
T ss_pred -CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCC
Confidence 2588999999999999999887 79999986 444556666643
No 128
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.8e-12 Score=149.56 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=75.3
Q ss_pred CCCCeEEEEECCCCcE---EEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 245 DNVGMVIVRDIVSKNV---IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~---v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
..|+.|++||+.++.. ..+++ +|...|.+|+|+ |++||+++ +|+ |++||+..+ .+..
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~---------------~~~~ 259 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNY---------------SISS 259 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTT---------------EEEE
T ss_pred eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCC---------------eEEE
Confidence 4578999999998773 45674 899999999999 79999998 565 999999865 2223
Q ss_pred eecCCCcccEEEEEE--cCCCCEEEEEeCCCeEEEEecC
Q 004015 321 LQRGLTNAVIQDISF--SDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaF--SpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+..|+ .+.|++|+| |||++.|++++.||+ +||.+.
T Consensus 260 ~~~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 260 LKTGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EECSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEcCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 33363 456999999 999999999999999 999997
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.40 E-value=2.7e-11 Score=125.89 Aligned_cols=223 Identities=9% Similarity=0.094 Sum_probs=130.8
Q ss_pred CEEEEEECCCCcE-EEEEeCCCCEEE-EEEc--CcEEEEEeCC----eEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSY-VHMLKFRSPIYS-VRCS--SRVVAICQAA----QVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~-V~tLkf~s~V~s-V~~s--~rlLaVs~d~----~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
+.|.+||+.+++. +..+........ ++|+ +++|+++... +|++||+.+++.+..+.....
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------------ 129 (331)
T 3u4y_A 62 QTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD------------ 129 (331)
T ss_dssp CEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT------------
T ss_pred CeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC------------
Confidence 5899999999998 777776555555 8886 6677676555 899999999998887754311
Q ss_pred cccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhce-eeecCCccccccccc
Q 004015 136 GYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG-IVNLGDLGYKKLSQY 212 (779)
Q Consensus 136 ~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~G-l~~lGd~~~~~ls~y 212 (779)
...++++| ++|.++... .+..+..|..+....+... ...+
T Consensus 130 -~~~~~~spdg~~l~~~~~~-------------------------~~~~i~~~~~~~~g~~~~~~~~~~----------- 172 (331)
T 3u4y_A 130 -AVGIAISPNGNGLILIDRS-------------------------SANTVRRFKIDADGVLFDTGQEFI----------- 172 (331)
T ss_dssp -EEEEEECTTSSCEEEEEET-------------------------TTTEEEEEEECTTCCEEEEEEEEE-----------
T ss_pred -ccceEECCCCCEEEEEecC-------------------------CCceEEEEEECCCCcEeecCCccc-----------
Confidence 12355554 344443210 0110211211110000000 0000
Q ss_pred cccccCCCcCccccc-cCCCCCCCccCCcccccCCCCeEEEEECCCCcE---EEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 004015 213 CSEFLPDSQNSLQSA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV---IAQFRAHKSPISALCFDPSGILLVTASV 288 (779)
Q Consensus 213 ~~~l~p~~~~si~sa-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~---v~~f~aHt~~IsaLaFSPdG~lLATaS~ 288 (779)
+.+......+ .++ |- ..++....++.|.+||+.+++. +..+..+ ..+..++|+|||++|+.++.
T Consensus 173 -----~~~~~~~~~~~spd----g~--~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 173 -----SGGTRPFNITFTPD----GN--FAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp -----CSSSSEEEEEECTT----SS--EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred -----cCCCCccceEECCC----CC--EEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 0000000000 111 10 0123344678999999999888 7777755 56788999999998776665
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC--Cccc---EEEEEEcCCCCEEEEEeC-CCeEEEEecCCC
Q 004015 289 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--TNAV---IQDISFSDDSNWIMISSS-RGTSHLFAINPL 359 (779)
Q Consensus 289 DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~--t~a~---I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~ 359 (779)
....|.+||+.++ ....+..+..+. .... ...++|||||++|++++. +++|.||++...
T Consensus 241 ~~~~i~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 241 STVDVFNFNQLSG------------TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp SEEEEEEEETTTT------------EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCEEEEEECCCC------------ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 4345999998865 222233333331 1111 356899999999877665 569999999753
No 130
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.40 E-value=1e-10 Score=121.47 Aligned_cols=94 Identities=7% Similarity=0.071 Sum_probs=66.5
Q ss_pred EECCCCcE-EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccE
Q 004015 253 RDIVSKNV-IAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI 330 (779)
Q Consensus 253 wDl~s~~~-v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I 330 (779)
+|..+++. +..+..+...+..++|+| ||++|+++ +++ |.+||+.++ ..+..+..+ ..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~---~~~ 297 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQR--------------KLIKAANLD---HTY 297 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---SCC
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccC--------------eEEEEEcCC---CCc
Confidence 45544432 122334555788899999 99999988 554 999999865 333344333 236
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 331 QDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 331 ~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+++|+|||++|++++.+++|+|||+.+......+.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 799999999999999999999999998765444443
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.40 E-value=4.7e-11 Score=131.38 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=71.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.+||+.++++ ..+..|...+.+++|+|||++|++++.+ |. .|.+||+..+ ... .+..
T Consensus 247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~------------~~~---~l~~-- 308 (415)
T 2hqs_A 247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG------------APQ---RITW-- 308 (415)
T ss_dssp CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS------------CCE---ECCC--
T ss_pred ceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC------------CEE---EEec--
Confidence 4699999998876 6788899999999999999999988864 43 3666687654 111 2211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC---CeEEEEecCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPL 359 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~D---GTVhIwdl~~~ 359 (779)
....+.+++|||||++|++++.+ .+|++|++...
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 12358899999999999998875 58999999764
No 132
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.38 E-value=8.4e-13 Score=143.58 Aligned_cols=108 Identities=6% Similarity=0.039 Sum_probs=84.7
Q ss_pred ccccCCCCeEEEEECCCCcEE-----EEeccCCCCeEEEEEcC--------CCCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 004015 241 FPDADNVGMVIVRDIVSKNVI-----AQFRAHKSPISALCFDP--------SGILLVTASVQGHNINIFKIIPGILGTSS 307 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v-----~~f~aHt~~IsaLaFSP--------dG~lLATaS~DGt~I~Vwdi~~~~~g~~s 307 (779)
++++..|++|+|||+.++... ..+.+|++.|.+|+|+| ||++|||||.|++ |+|||+...
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t-v~~Wd~~~~------ 176 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT-LIIWRLTDE------ 176 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE-EEEEEEETT------
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe-EEEEECCCC------
Confidence 566788999999999987643 44679999999999998 8999999999987 999999764
Q ss_pred ccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCCceee
Q 004015 308 ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 308 ~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..+..+..+ ...|.+++|+|++. +|++++.||+|+|||+.........
T Consensus 177 --------~~~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 177 --------GPILAGYPL--SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp --------EEEEEEEEC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred --------ceeeeecCC--CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence 233343332 23589999999875 8999999999999999876544333
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.37 E-value=7.9e-11 Score=122.73 Aligned_cols=191 Identities=14% Similarity=0.096 Sum_probs=132.1
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|.+||+.+++.++++.....+..++++ ++.+.++ .++.|++||+.+++.+.++....... +. ...
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~------~~~ 139 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--TE------EVR 139 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC--CS------SCC
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--cc------ccC
Confidence 368999999999999999987778888895 4655443 35899999999999888876531100 00 000
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
|. .++.+++.. +|..+.
T Consensus 140 ~~--~~~~~~~s~---------------------------dg~~l~---------------------------------- 156 (353)
T 3vgz_A 140 PL--QPRELVADD---------------------------ATNTVY---------------------------------- 156 (353)
T ss_dssp CC--EEEEEEEET---------------------------TTTEEE----------------------------------
T ss_pred CC--CCceEEECC---------------------------CCCEEE----------------------------------
Confidence 00 112233321 111110
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
+.....++.|.+||+.+++.+..+..+...+.+++|+|||++|++++.++. |.+||+
T Consensus 157 ----------------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d~ 213 (353)
T 3vgz_A 157 ----------------------ISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITIDT 213 (353)
T ss_dssp ----------------------EEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEET
T ss_pred ----------------------EEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEEC
Confidence 001123578999999999999998867777899999999999999998876 899998
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCC--CcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGL--TNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 361 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~--t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~gg 361 (779)
.++ ..+..+.-+. ....+.+++|+||+++|++++.+ ++|++||+.....
T Consensus 214 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 214 ADN--------------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TTT--------------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred CCC--------------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 865 2333333221 12347899999999988777765 9999999977543
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.37 E-value=3e-10 Score=117.97 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=70.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCccCCCCceeE--EEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVH--LYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~--l~~l~rG 324 (779)
+.|.+||+.+++.+..+..+. ...+++|+|||++|++++.+ +..|.+|++... + .... ...+..+
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~--g---------~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 108 FNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDAD--G---------VLFDTGQEFISGG 175 (331)
T ss_dssp CEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECTT--C---------CEEEEEEEEECSS
T ss_pred ccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECCC--C---------cEeecCCccccCC
Confidence 389999999999988887654 46899999999866655544 443899998753 1 1111 1122122
Q ss_pred CCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 361 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg 361 (779)
..+..++|+|||++|++++ .+++|++||+.....
T Consensus 176 ---~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 176 ---TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ---SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ---CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 2378999999999776655 689999999987544
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.36 E-value=2.2e-10 Score=119.38 Aligned_cols=177 Identities=11% Similarity=0.132 Sum_probs=124.0
Q ss_pred CCEEEEEECCCCcEEEEEeCCC----------CEEEEEEc--CcEEEEEe---CCeEEEEeCCCCcEEEEEecCCcccCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRS----------PIYSVRCS--SRVVAICQ---AAQVHCFDAATLEIEYAILTNPIVMGH 127 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s----------~V~sV~~s--~rlLaVs~---d~~I~IwD~~T~e~l~tl~t~p~~~~~ 127 (779)
.+.|.+||+.+++.+.++.... .+..+.++ ++.+.++. ++.|++||+.+++.+..+.....
T Consensus 110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---- 185 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK---- 185 (353)
T ss_dssp TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT----
T ss_pred CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC----
Confidence 4789999999999999998743 27889995 56565543 67899999999998877742110
Q ss_pred CCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 128 PSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 128 p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
. | ..+++.. +|..+
T Consensus 186 --------~--~-----~~~~~s~---------------------------dg~~l------------------------ 199 (353)
T 3vgz_A 186 --------M--S-----TGLALDS---------------------------EGKRL------------------------ 199 (353)
T ss_dssp --------T--C-----CCCEEET---------------------------TTTEE------------------------
T ss_pred --------c--c-----ceEEECC---------------------------CCCEE------------------------
Confidence 0 0 1112220 11111
Q ss_pred ccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEEEcCCCCEE
Q 004015 208 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----HKSPISALCFDPSGILL 283 (779)
Q Consensus 208 ~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a----Ht~~IsaLaFSPdG~lL 283 (779)
+.+..++.|.+||+.+++.+..+.. +...+..++|+|+|++|
T Consensus 200 ----------------------------------~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 200 ----------------------------------YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp ----------------------------------EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred ----------------------------------EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence 1112357899999999998888774 56678899999999988
Q ss_pred EEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCC
Q 004015 284 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 361 (779)
Q Consensus 284 ATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg 361 (779)
+.++.+...|.+||+.++ ..+..+.-+. -..++|+||++++++++ .+++|++||+.+...
T Consensus 246 ~~~~~~~~~v~~~d~~~~--------------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNG--------------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp EEEESSSSEEEEEETTTC--------------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEeCCCCEEEEEECCCC--------------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 877776456999999765 2233333232 24699999999776666 689999999977543
No 136
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.36 E-value=4.6e-11 Score=132.99 Aligned_cols=107 Identities=9% Similarity=0.123 Sum_probs=80.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++++..||+|+|||++++..+..+.+|...|.+++|+|+|++||+|+.||+ |+|||+. + .......
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~------------~~~~~~~ 230 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-L------------QEKKVIP 230 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-C------------CEEEEEC
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-C------------ccccccc
Confidence 344567899999999999877777889999999999999999999999998 8999987 3 1111121
Q ss_pred eecCC---CcccEEEEEEcCCCCEEEEE-eCCCe------EEEEecCCCCC
Q 004015 321 LQRGL---TNAVIQDISFSDDSNWIMIS-SSRGT------SHLFAINPLGG 361 (779)
Q Consensus 321 l~rG~---t~a~I~sIaFSpDg~~LAtg-S~DGT------VhIwdl~~~gg 361 (779)
.+... +...|.+++|++++.++++. +.||. +++|++...+.
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 11111 12258999999999988654 34443 89999986543
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.33 E-value=1.3e-10 Score=133.41 Aligned_cols=188 Identities=10% Similarity=0.036 Sum_probs=129.7
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-EeCCeEEEEeC--CCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDA--ATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~--~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|.+||+.+++++.++.....+..++|+ +++|++ +.+++|.+||+ .+++++.++....
T Consensus 158 d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~--------------- 222 (543)
T 1nir_A 158 AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI--------------- 222 (543)
T ss_dssp GTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS---------------
T ss_pred CCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC---------------
Confidence 378999999999999999976569999996 555554 77899999999 8999888875321
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+|+.+|++..+ +.+|+.+.
T Consensus 223 -----~p~~va~sp~~-----------------------~~dg~~l~--------------------------------- 241 (543)
T 1nir_A 223 -----EARSVESSKFK-----------------------GYEDRYTI--------------------------------- 241 (543)
T ss_dssp -----EEEEEEECCST-----------------------TCTTTEEE---------------------------------
T ss_pred -----CcceEEeCCCc-----------------------CCCCCEEE---------------------------------
Confidence 12345554100 00122110
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC----------CC-CeEEEEEcCCCCE-EEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH----------KS-PISALCFDPSGIL-LVT 285 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH----------t~-~IsaLaFSPdG~l-LAT 285 (779)
+....++.|.|||..+++++..+..+ .. .+.++.|+|++.. +++
T Consensus 242 ------------------------v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 242 ------------------------AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp ------------------------EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ------------------------EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 00123578999999999999988753 33 6899999998765 556
Q ss_pred EeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCcee
Q 004015 286 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 286 aS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~ 364 (779)
...+|+ |.+||+.+. ....+..+..+ ..+.+++|+|||+||++++ .+++|.|||+.+......
T Consensus 298 ~~~~g~-i~vvd~~~~------------~~l~~~~i~~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 298 VKETGK-VLLVNYKDI------------DNLTVTSIGAA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp ETTTTE-EEEEECTTS------------SSCEEEEEECC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred ECCCCe-EEEEEecCC------------CcceeEEeccC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 666665 899998764 11122233222 2377899999999877655 589999999988654444
Q ss_pred ec
Q 004015 365 FQ 366 (779)
Q Consensus 365 ~~ 366 (779)
+.
T Consensus 362 i~ 363 (543)
T 1nir_A 362 VD 363 (543)
T ss_dssp EE
T ss_pred ec
Confidence 44
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.30 E-value=3.6e-10 Score=116.38 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=46.6
Q ss_pred CEEEEEECCCCcEEEEEeCCC---CEEEEEEc--CcEEEEE--eCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s---~V~sV~~s--~rlLaVs--~d~~I~IwD~~T~e~l~tl~t 120 (779)
++|++||+.+++.+.++.... .+..++++ ++.++++ .+++|++||+.+++.+.++..
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 679999999999999999876 78899996 5555443 357999999999998877753
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.28 E-value=4e-10 Score=129.23 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=126.2
Q ss_pred CCEEEEEEC--CCCcEEEEEeCCCCEEEEEEcC------cEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCC
Q 004015 63 PTVVHFYSL--RSQSYVHMLKFRSPIYSVRCSS------RVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGG 132 (779)
Q Consensus 63 ~~tVrIWDL--~Tge~V~tLkf~s~V~sV~~s~------rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~ 132 (779)
.++|++||+ .+++++.++.....++.|+|+. ++|+++ .+++|.+||..|++++.++.+.......
T Consensus 199 d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~----- 273 (543)
T 1nir_A 199 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT----- 273 (543)
T ss_dssp TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS-----
T ss_pred CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc-----
Confidence 478999999 9999999999888899999974 566664 4799999999999999998753210000
Q ss_pred ccccccceeecCc--eeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 133 IGIGYGPLAVGPR--WLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 133 ~~~~~~piAlgpR--wLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
..+.+ +++ -++++ | ++..
T Consensus 274 --~~~~~---~~~v~~i~~s-------------~--------------~~~~---------------------------- 293 (543)
T 1nir_A 274 --QTYHP---EPRVAAIIAS-------------H--------------EHPE---------------------------- 293 (543)
T ss_dssp --CCEES---CCCEEEEEEC-------------S--------------SSSE----------------------------
T ss_pred --ccccc---CCceEEEEEC-------------C--------------CCCE----------------------------
Confidence 00000 000 00010 0 0000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEEcCCCCEEEEEeC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA--QFRAHKSPISALCFDPSGILLVTASV 288 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~--~f~aHt~~IsaLaFSPdG~lLATaS~ 288 (779)
.++....+|.|.+||+.+.+.+. .+ .|...+..++|+|||++|++++.
T Consensus 294 -----------------------------~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 294 -----------------------------FIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp -----------------------------EEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG
T ss_pred -----------------------------EEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec
Confidence 11223457899999998866544 44 35667888999999998776654
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc--cEEEEEEcCC-CCEEEEEe-CCCeEEEEecCC------
Q 004015 289 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDD-SNWIMISS-SRGTSHLFAINP------ 358 (779)
Q Consensus 289 DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a--~I~sIaFSpD-g~~LAtgS-~DGTVhIwdl~~------ 358 (779)
....|.|||+.++ ..+..+.-|..++ ....+ ++|| ++.++++. .|++|.||++.+
T Consensus 344 ~~~~v~v~D~~tg--------------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 344 NSNKVAVIDSKDR--------------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp GGTEEEEEETTTT--------------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred CCCeEEEEECCCC--------------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 3334999999876 3444444332222 22233 4777 66666665 689999999988
Q ss_pred -CCCceeeccCC
Q 004015 359 -LGGSVNFQPTD 369 (779)
Q Consensus 359 -~gg~~~~~~H~ 369 (779)
......+.+|.
T Consensus 409 ~~~~v~~l~~~g 420 (543)
T 1nir_A 409 AWKKVAELQGQG 420 (543)
T ss_dssp BTSEEEEEECSC
T ss_pred cCeEEEEEEcCC
Confidence 44444555553
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.27 E-value=3e-10 Score=117.30 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=72.2
Q ss_pred CCCeEEEEEC---CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEeCCC-CCCCCCCccCCCCceeEEE-
Q 004015 246 NVGMVIVRDI---VSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIP-GILGTSSACDAGTSYVHLY- 319 (779)
Q Consensus 246 ~dG~V~VwDl---~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS-~DGt~I~Vwdi~~-~~~g~~s~~~~~~s~~~l~- 319 (779)
.++.|.+||+ ...+.+..+..+. .+.+++|+|+|++|++++ .+++ |.+||+.. + ....+.
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~------------~~~~~~~ 169 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDR-ICLFTVSDDG------------HLVAQDP 169 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTE-EEEEEECTTS------------CEEEEEE
T ss_pred CCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCE-EEEEEecCCC------------ceeeecc
Confidence 3578999999 4445566665544 588999999999888887 6665 99999976 3 122222
Q ss_pred -EeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCc
Q 004015 320 -RLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGS 362 (779)
Q Consensus 320 -~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~ 362 (779)
.+.. .....+.+++|+||+++|++++ .++++++|++....+.
T Consensus 170 ~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 170 AEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp EEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred ccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 2211 1123478999999999886665 8899999999764443
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.26 E-value=2.5e-09 Score=110.32 Aligned_cols=104 Identities=10% Similarity=0.223 Sum_probs=68.8
Q ss_pred CCCeEEEEECCC-CcEEE----EeccC-CCCeEEEEEcCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 246 NVGMVIVRDIVS-KNVIA----QFRAH-KSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 246 ~dG~V~VwDl~s-~~~v~----~f~aH-t~~IsaLaFSPdG~lLATaS-~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.++.|.+||+.+ ++... .+..+ ...+.+++|+|+|++|+.++ .+++ |.+|++... .+ ....+
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~-~g---------~~~~~ 217 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDP-HG---------NIECV 217 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCT-TS---------CCEEE
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCC-CC---------cEEEE
Confidence 457899999987 54432 33333 35788999999999776665 5554 999998642 01 11222
Q ss_pred EEe---ecCCC-cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCC
Q 004015 319 YRL---QRGLT-NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 360 (779)
Q Consensus 319 ~~l---~rG~t-~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~g 360 (779)
..+ ..+.. ...+.+++|+|||++|+++. .+++|++|++...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~ 264 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 264 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence 222 12211 12377899999999888555 79999999998533
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.24 E-value=7.1e-11 Score=136.85 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCC----CEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DG----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++.|.+||+.+++...... .|...|.+++|+|||++|++++.++ ..|.+||+.++. ....+.
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-----------~~~~~~ 301 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-----------FVRTLF 301 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----------EEEEEE
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----------eeeEEE
Confidence 45689999999987654442 5777899999999999999988765 248999987640 112222
Q ss_pred EeecCCCcccEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSp--Dg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..........+.+++||| ||++|++++.||+++||.+...++
T Consensus 302 ~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 302 VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 211111011246789999 999999999999999999974443
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.24 E-value=1.3e-10 Score=134.71 Aligned_cols=51 Identities=4% Similarity=-0.011 Sum_probs=41.4
Q ss_pred CEEEEEECCCCcEEEEEeCCC----CEEEEEEc--CcEEEEEeC----------CeEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQA----------AQVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s----~V~sV~~s--~rlLaVs~d----------~~I~IwD~~T~e~ 114 (779)
++|++||+.+|+....+.... .|.+++|+ ++.|+.+.+ +.|++||+.+++.
T Consensus 37 g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 37 GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 579999999999888887644 38999996 677776543 7899999999875
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.23 E-value=2e-11 Score=135.89 Aligned_cols=108 Identities=8% Similarity=0.177 Sum_probs=84.5
Q ss_pred ccCCCCeEEEEECCCC--------c---EEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 243 DADNVGMVIVRDIVSK--------N---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~--------~---~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
++..+|.|+|||+.+. + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+..+
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~--------- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTET--------- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSS---------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCC---------
Confidence 5678999999998754 2 24566789999999999998 899999999998 899999864
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
..+... .+ +...|.+++|||||++||+|+.||+|+|||+. ......+..|
T Consensus 183 -----~~~~~~-~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 183 -----VKVCAT-LP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp -----EEEEEE-EC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred -----cceeec-cC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 222222 22 23459999999999999999999999999997 3333344433
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.23 E-value=2.1e-10 Score=132.95 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCEEEEEeCC--------------------------------CCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 271 ISALCFDPSGILLVTASVQ--------------------------------GHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~D--------------------------------Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+.+++|||||++||+++.| ...|.+||+..+ ..
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~--------------~~- 247 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG--------------KT- 247 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT--------------EE-
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC--------------ce-
Confidence 5889999999999999822 124889998764 11
Q ss_pred EEeecC-CCcccEEEEEEcCCCCEEEEEeCCC-----eEEEEecCCC
Q 004015 319 YRLQRG-LTNAVIQDISFSDDSNWIMISSSRG-----TSHLFAINPL 359 (779)
Q Consensus 319 ~~l~rG-~t~a~I~sIaFSpDg~~LAtgS~DG-----TVhIwdl~~~ 359 (779)
..+..+ .....|.+++|||||++|++++.++ +|++||+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 122111 1223489999999999999988876 9999999775
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.19 E-value=1.4e-10 Score=135.00 Aligned_cols=105 Identities=9% Similarity=0.102 Sum_probs=72.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCC----------------eEEEEEcCCCCEEEEEeCCCC--------------------
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSP----------------ISALCFDPSGILLVTASVQGH-------------------- 291 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~----------------IsaLaFSPdG~lLATaS~DGt-------------------- 291 (779)
+.|.+||+.+++.......+... +.+++|||||++||+++.|+.
T Consensus 172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 46888888887766554444443 477999999999999987652
Q ss_pred ------------EEEEEeCCC-CCCCCCCccCCCCceeEEEEeecC-CCcccEEEEEEcCCCCEEEEEeC-----CCeEE
Q 004015 292 ------------NINIFKIIP-GILGTSSACDAGTSYVHLYRLQRG-LTNAVIQDISFSDDSNWIMISSS-----RGTSH 352 (779)
Q Consensus 292 ------------~I~Vwdi~~-~~~g~~s~~~~~~s~~~l~~l~rG-~t~a~I~sIaFSpDg~~LAtgS~-----DGTVh 352 (779)
.|.+||+.. + .... +..+ .....|.+++| |||++|++++. +.+|+
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~------------~~~~---~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~ 315 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQA------------QTQW---IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLV 315 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTC------------CCEE---ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEE
T ss_pred ecCCCCCCCCeeEEEEEECCCCC------------ceEE---ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEE
Confidence 477778765 4 1111 1111 12335899999 99999998765 57899
Q ss_pred EEecCCCCCceeeccC
Q 004015 353 LFAINPLGGSVNFQPT 368 (779)
Q Consensus 353 Iwdl~~~gg~~~~~~H 368 (779)
+||+........+..|
T Consensus 316 ~~d~~~g~~~~~~~~~ 331 (741)
T 2ecf_A 316 EVTLASNQQRVLAHET 331 (741)
T ss_dssp EEETTTCCEEEEEEEE
T ss_pred EEECCCCceEEEEEcC
Confidence 9999876544444444
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.17 E-value=2.6e-10 Score=132.71 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=74.2
Q ss_pred eEEEEECCC-CcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 249 MVIVRDIVS-KNVIAQFR--AHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 249 ~V~VwDl~s-~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~D----Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.|.+||+.+ ++...... .|...|..++| |||++|+.++.+ ...|.+||+.++ ....+...
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~ 330 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN------------QQRVLAHE 330 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC------------CEEEEEEE
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC------------ceEEEEEc
Confidence 788899998 87655443 47889999999 999999977641 124899998765 22333332
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
........+.+++|||||+++++++.||+++||.+...++...+..|
T Consensus 331 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~ 377 (741)
T 2ecf_A 331 TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHG 377 (741)
T ss_dssp ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCS
T ss_pred CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeec
Confidence 21100002468999999999999999999999998754443344444
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.14 E-value=4e-09 Score=111.70 Aligned_cols=108 Identities=12% Similarity=0.185 Sum_probs=75.3
Q ss_pred CCCeEEEEECCCCcE--EEEec---cCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIVSKNV--IAQFR---AHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~--v~~f~---aHt~~IsaLaFSPdG~lLATaS~D-Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++.|.+||+.+++. +..+. .+......|+|+|||++|+++..+ ...|.||++... . +....+.
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~---------g~~~~~~ 300 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-N---------GTLTKVG 300 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-T---------CCEEEEE
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-C---------CcEEEee
Confidence 457899999987643 33333 344567899999999998776665 345999998632 0 1223344
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeec
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+..| ..+.+++|||||++|++++ .++++.||++....+.....
T Consensus 301 ~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 301 YQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 44332 3467999999999999988 67999999887665555443
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.10 E-value=1.1e-08 Score=107.43 Aligned_cols=106 Identities=8% Similarity=0.190 Sum_probs=70.4
Q ss_pred CCCeEEEEECCC--CcE--EEEeccCC------CCeEEEEEcCCCCEEE-EEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 246 NVGMVIVRDIVS--KNV--IAQFRAHK------SPISALCFDPSGILLV-TASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 246 ~dG~V~VwDl~s--~~~--v~~f~aHt------~~IsaLaFSPdG~lLA-TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+ +...+++ |.||++... +.
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~~-----------g~ 274 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTAD-----------GH 274 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECGG-----------GC
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECCC-----------Cc
Confidence 346788888764 432 33333332 3488999999999874 4555655 999998642 02
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCCceee
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSVNF 365 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~gg~~~~ 365 (779)
...+..+..+ ...+.+++|||||++|++++.+ +++.||++....+....
T Consensus 275 ~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 2344444331 1236799999999999988865 89999988766555443
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.10 E-value=1.3e-08 Score=106.99 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCCeEEEEECC-CCcE--EEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 246 NVGMVIVRDIV-SKNV--IAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 246 ~dG~V~VwDl~-s~~~--v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.++.|.+||+. +++. +..+..+. ..+..++|+|||++|+.++..+..|.+|++... . +....+..+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~---------g~~~~~~~~ 229 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-T---------GAFTQLGIV 229 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-T---------TEEEEEEEE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-C---------CceEEeeee
Confidence 45789999998 4443 23333333 367889999999977776655456999998742 0 012222232
Q ss_pred ecCCC----cccEEEEEEcCCCCEEE-EEeCCCeEEEEecCCC
Q 004015 322 QRGLT----NAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPL 359 (779)
Q Consensus 322 ~rG~t----~a~I~sIaFSpDg~~LA-tgS~DGTVhIwdl~~~ 359 (779)
..... ...+..++|||||++|+ +...+++|.||++...
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 21110 02378999999999885 5556899999999754
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.09 E-value=1.4e-08 Score=107.39 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=69.8
Q ss_pred CCCeEEEEECCCCcE------E------EE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCC
Q 004015 246 NVGMVIVRDIVSKNV------I------AQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~------v------~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
.++.|.+|++..... + .. ...+...+..++|+|||++|+.++.....|.+|++..+
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g----------- 243 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG----------- 243 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-----------
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-----------
Confidence 457899998875431 1 12 22344567899999999988887753345999998754
Q ss_pred CceeEEEEeecCCC-cccEEEEEEcCCCCEEEEEeCC--CeEEEEecCCCCCc
Q 004015 313 TSYVHLYRLQRGLT-NAVIQDISFSDDSNWIMISSSR--GTSHLFAINPLGGS 362 (779)
Q Consensus 313 ~s~~~l~~l~rG~t-~a~I~sIaFSpDg~~LAtgS~D--GTVhIwdl~~~gg~ 362 (779)
....+..+..... .....+++|||||++|+++..+ ++|.||++....+.
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 244 -MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp -EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred -ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 2233333322111 1236799999999999777765 89999999754443
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.07 E-value=2.2e-09 Score=107.43 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=68.9
Q ss_pred CCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC----------CEEEEEeCCCCCCCCCCccCCCC
Q 004015 245 DNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPSGILLVTASVQG----------HNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 245 ~~dG~V~VwDl~-s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG----------t~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
..++.++||++. .+..+..+..|...+.+++|+|+|++|++++.++ ..|.+||+..+
T Consensus 192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~------------ 259 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG------------ 259 (297)
T ss_dssp CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC------------
T ss_pred cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC------------
Confidence 346788899886 5566788888989999999999999999888763 34899998764
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
....+..+..+ ...|.+++|+||+++|++++.+.
T Consensus 260 ~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 260 NVETLFDLFGG--QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCEEEEEEEES--TTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceeeeccCCC--CcccccceECCCCCEEEEEEecc
Confidence 22344444221 23478899999999999888764
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.04 E-value=2e-09 Score=124.64 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=66.4
Q ss_pred CCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 247 VGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aH------t~~IsaLaFSPdG~lLATaS~DG---t~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
...|.+||+.+++....+..| ...|..++|||||++|++++.++ ..|.+||+.++ ....
T Consensus 227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g------------~~~~ 294 (723)
T 1xfd_A 227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG------------VCTK 294 (723)
T ss_dssp EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC------------CEEE
T ss_pred eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC------------cceE
Confidence 458999999998876677765 67899999999999998776432 35899998765 2223
Q ss_pred EEEeecCCCcccE----EEEEEcCCCCEEEE--EeCCC----eEEEEecC
Q 004015 318 LYRLQRGLTNAVI----QDISFSDDSNWIMI--SSSRG----TSHLFAIN 357 (779)
Q Consensus 318 l~~l~rG~t~a~I----~sIaFSpDg~~LAt--gS~DG----TVhIwdl~ 357 (779)
+.... ....+ .+++|||||++|+. +..++ +.+||.+.
T Consensus 295 ~~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 295 KHEDE---SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEEE---CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEec---cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 32221 11112 37899999998875 45677 55665554
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.01 E-value=2.5e-09 Score=121.56 Aligned_cols=97 Identities=8% Similarity=-0.057 Sum_probs=70.3
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 250 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 250 V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D----Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
+.|||+.++++......+. .+++|||||++||+++.+ ++ |.+||+..+ ... .+. +.
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~-i~~~d~~~g------------~~~---~l~-~~ 193 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS-LFTSNLSSG------------GLR---VFD-SG 193 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE-EEEEETTTC------------CCE---EEC-CS
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE-EEEEcCCCC------------Cce---Eee-cC
Confidence 4499999887655444333 789999999999988776 44 899998765 122 232 21
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC--eEEEEecCCCCCceeeccC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRG--TSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DG--TVhIwdl~~~gg~~~~~~H 368 (779)
...+.+++|||||++||++..++ +|++||+...... .+..|
T Consensus 194 -~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~ 236 (582)
T 3o4h_A 194 -EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP 236 (582)
T ss_dssp -SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS
T ss_pred -CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC
Confidence 23479999999999999888899 8999999765433 44444
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.00 E-value=1.8e-09 Score=125.64 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=41.0
Q ss_pred CEEEEEECCCCcEEEEEeCCC----CEEEEEEc--CcEEEEEe----------CCeEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQ----------AAQVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s----~V~sV~~s--~rlLaVs~----------d~~I~IwD~~T~e~ 114 (779)
++|++||+.+|+....+.... .|.+++|+ ++.|+.+. +++|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 579999999999887776543 38899996 67777654 47999999999875
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.95 E-value=9.7e-09 Score=125.72 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=78.8
Q ss_pred CCeEE-EEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVI-VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~-VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
++.+. +||+.+++.. .+..|...+.+++|||||++||+++.+++ |++||+.++ ....+. .++
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg------------~~~~~~---~~~ 419 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETG------------KPTVIE---RSR 419 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTC------------CEEEEE---ECS
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCC------------ceEEec---cCC
Confidence 35677 8899877654 44588889999999999999999999986 899999875 222222 232
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC----------eEEEEecCCCCCceeeccCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRG----------TSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DG----------TVhIwdl~~~gg~~~~~~H~ 369 (779)
...|.+++|||||++||+++.++ +|+|||+.... ...+..|.
T Consensus 420 -~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 420 -EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp -SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred -CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 23478999999999999988765 99999998643 44555553
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.94 E-value=1e-08 Score=125.59 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=78.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC---------CEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG---------HNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG---------t~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.++.|++||+.+++....+..|...|.+++|||||++||+++.++ ..|++||+..+ .
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------~ 463 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------K 463 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------------E
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--------------c
Confidence 456899999999998888889999999999999999999888754 35999999764 2
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+..+..+ ...+.+++|||||++|+.++.++...+|+...
T Consensus 464 -~~~l~~~--~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 464 -IFAATTE--NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp -EEECSCS--SSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred -EEEeeCC--CcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 2333221 23478899999999999999999999998753
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.92 E-value=9.3e-09 Score=116.84 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=66.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEE--------EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALC--------FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLa--------FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.|.+||+.+++.. .+..|...+..++ |||||+++++++.+|+ ++||++ + ..+.
T Consensus 219 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g--------------~~~~- 279 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--G--------------ERVE- 279 (582)
T ss_dssp EEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--T--------------EEEC-
T ss_pred EEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--C--------------Ceec-
Confidence 7999999998887 8888888777777 9999999999999987 899998 4 1111
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCe-EEEEecC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGT-SHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGT-VhIwdl~ 357 (779)
. ....|.+++|| |++++++++.+.+ -.||.+.
T Consensus 280 ~----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 280 A----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp C----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred c----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 1 12348899999 9999999888865 4444443
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.90 E-value=1.2e-07 Score=101.61 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=53.9
Q ss_pred CeEEEE-EcCCCCEEEEEeCCCC-----EEEEEeCCC-CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC---CC
Q 004015 270 PISALC-FDPSGILLVTASVQGH-----NINIFKIIP-GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD---DS 339 (779)
Q Consensus 270 ~IsaLa-FSPdG~lLATaS~DGt-----~I~Vwdi~~-~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp---Dg 339 (779)
.+..++ |||||++|++++.+.. .|.||++.. + ....+..+.... ...+..++||| ||
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~-~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTP-TSGGHSNAVSPCPWSD 321 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECS-SCCTTCCCEEECTTCT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecC-CCCcccceecCCCcCC
Confidence 488999 9999999887765443 599999863 2 122221111111 12245789999 89
Q ss_pred CEEEEEeCC-CeEEEEecCCC
Q 004015 340 NWIMISSSR-GTSHLFAINPL 359 (779)
Q Consensus 340 ~~LAtgS~D-GTVhIwdl~~~ 359 (779)
++|++++.+ ++|.||++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999999875 89999999764
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.89 E-value=2.3e-07 Score=100.26 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=45.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEe-----------CCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~-----------d~~I~IwD~~T~e~l~tl~t 120 (779)
++|.+||+.+++.+.++.....- .|+++ +++|.++. ++.|.+||+.+++.+.++..
T Consensus 31 ~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp CEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred CeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 67999999999999998865444 88886 66776653 46799999999999988864
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.88 E-value=4.3e-07 Score=97.22 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=72.5
Q ss_pred CCCeEEEEECC-CCcEEEEec----cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC-CCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIV-SKNVIAQFR----AHKSPISALCFDPSGILLVTASVQGHNINIFKII-PGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~-s~~~v~~f~----aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~-~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+|.+.+|++. .++....+. .+...+.+++|+|||++|++++.....|.+||+. ++ ....+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g------------~~~~~~ 184 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG------------EVELVG 184 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS------------CEEEEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC------------CEEEee
Confidence 46789999997 455544443 2556799999999999998877644469999987 43 122233
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGG 361 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg 361 (779)
.+.-......+..++|||||++|++++. ++++.+|++....+
T Consensus 185 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 227 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence 3321000134789999999999988875 78999999875433
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.85 E-value=5.9e-08 Score=114.35 Aligned_cols=106 Identities=10% Similarity=-0.021 Sum_probs=62.9
Q ss_pred CeEEEEECCC---Cc--EEEEec------cCCCCeEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCCC-CCCCccCCC
Q 004015 248 GMVIVRDIVS---KN--VIAQFR------AHKSPISALCFDPSGILLVTASVQG---HNINIFKIIPGIL-GTSSACDAG 312 (779)
Q Consensus 248 G~V~VwDl~s---~~--~v~~f~------aHt~~IsaLaFSPdG~lLATaS~DG---t~I~Vwdi~~~~~-g~~s~~~~~ 312 (779)
..|.|||+.+ ++ ....+. +|...|..++|||||++++.....+ ..|.+||+.++.. +. .
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~-~----- 301 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN-C----- 301 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE-E-----
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc-e-----
Confidence 4789999998 73 223343 3888899999999999877665433 2488999876510 00 0
Q ss_pred CceeEEEEeecCCCcccE-----EEEEEcCCCCEEE-EEe-CCCeEEEEecCCCCCc
Q 004015 313 TSYVHLYRLQRGLTNAVI-----QDISFSDDSNWIM-ISS-SRGTSHLFAINPLGGS 362 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I-----~sIaFSpDg~~LA-tgS-~DGTVhIwdl~~~gg~ 362 (779)
.....+.. .+. ...| .+++|||||++|+ ..+ .+|.-|||-+...++.
T Consensus 302 ~~~~~l~~--~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 302 LVARQHIE--MST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CGGGCEEE--ECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred eEEEEeee--ccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 00111111 111 1112 3688999999987 665 4565555544433443
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.84 E-value=1.7e-06 Score=88.29 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCCCeEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aH--t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
..++.|.+||.. ++.+..+..+ ...+..|+|+++|+++++...++..|.+||... ..+..+.
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---------------~~~~~~~ 245 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---------------QLISALE 245 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---------------CEEEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---------------CEEEEEc
Confidence 356899999984 4566777544 467899999999999998877752499998532 1233333
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+.....+.+++|+|||+++++ +.|++|+||++...
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 2222234789999999987766 67999999998653
No 164
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.82 E-value=5e-07 Score=95.94 Aligned_cols=178 Identities=7% Similarity=0.005 Sum_probs=118.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
++|.+||++|++.+.++........|+++ +++.++. .++.|.+||+.|++...++...... + ..
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~----~---------~~ 130 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD----M---------ES 130 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC----T---------TT
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc----c---------cC
Confidence 68999999999999999876778889993 5444444 5899999999999988777532100 0 00
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
-.|.-|++.. +.++
T Consensus 131 -~~p~~i~~~~----------------------------~~ly------------------------------------- 144 (328)
T 3dsm_A 131 -GSTEQMVQYG----------------------------KYVY------------------------------------- 144 (328)
T ss_dssp -CBCCCEEEET----------------------------TEEE-------------------------------------
T ss_pred -CCcceEEEEC----------------------------CEEE-------------------------------------
Confidence 0011112210 0000
Q ss_pred cCccccccCCCCCCCccCCcccccC-CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---------C
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDAD-NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---------G 290 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~-~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D---------G 290 (779)
+... .++.|.+||+.+++.+..+.... ....++|+|+|++++++..+ .
T Consensus 145 ---------------------v~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 145 ---------------------VNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp ---------------------EEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred ---------------------EEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCC
Confidence 0011 25689999999999888887533 34679999999988887654 1
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..|.+||..++ .+...+.+..| .....++|+||+++|.++.. +|.+||..+.
T Consensus 203 ~~v~~id~~t~------------~v~~~~~~~~g---~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 203 PSLYRIDAETF------------TVEKQFKFKLG---DWPSEVQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp CEEEEEETTTT------------EEEEEEECCTT---CCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred ceEEEEECCCC------------eEEEEEecCCC---CCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence 34899998764 22222222212 23689999999999988765 8888888653
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.80 E-value=3.5e-08 Score=102.23 Aligned_cols=103 Identities=10% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCC------CCeEEEEEcCCCCEEEEEeCC-----------CCEEEEEeCCCCCCCCCCc
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHK------SPISALCFDPSGILLVTASVQ-----------GHNINIFKIIPGILGTSSA 308 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt------~~IsaLaFSPdG~lLATaS~D-----------Gt~I~Vwdi~~~~~g~~s~ 308 (779)
.++.|.+||+.+++.+..+..+. ..+.+++|+|||++|++++.+ ...|.+||+.++...
T Consensus 63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---- 138 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA---- 138 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----
T ss_pred CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc----
Confidence 45789999999998888776433 237889999999999998865 234999998763000
Q ss_pred cCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 309 CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 309 ~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
........ ...+.+++|+|||+ +.+++ +.|.+||+.+......+
T Consensus 139 -----~~~~~~~~-----~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 139 -----KPVRTFPM-----PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp -----CCSEEEEC-----CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEE
T ss_pred -----ceeeeccC-----CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccc
Confidence 01111211 12377899999999 55554 34999999775433333
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.72 E-value=2.2e-08 Score=116.42 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=42.7
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEY 116 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~ 116 (779)
.+|++||+.+|+.+...+....+..++|+ ++.||.+.+++|++||+.+++...
T Consensus 90 ~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp EEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE
T ss_pred eEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE
Confidence 68999999999874323345678899996 678888889999999999987643
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.71 E-value=1.2e-07 Score=111.84 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=70.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.+.|||+.++++. .+..|...+...+|||||+.||.++. + .|.+|++..+. ...+ +. .|..
T Consensus 91 ~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~-~-~i~~~~~~~~~------------~~~l-t~-~g~~ 153 (740)
T 4a5s_A 91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWN-N-DIYVKIEPNLP------------SYRI-TW-TGKE 153 (740)
T ss_dssp EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEET-T-EEEEESSTTSC------------CEEC-CS-CCBT
T ss_pred ceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEEC-C-eEEEEECCCCc------------eEEE-cC-CCCc
Confidence 367899999998754 57778889999999999999999864 3 49999987651 1110 10 1111
Q ss_pred c----------------ccEEEEEEcCCCCEEEEEeCCCe-EEEEecCCCCC
Q 004015 327 N----------------AVIQDISFSDDSNWIMISSSRGT-SHLFAINPLGG 361 (779)
Q Consensus 327 ~----------------a~I~sIaFSpDg~~LAtgS~DGT-VhIwdl~~~gg 361 (779)
. .....++|||||++||.++.|.+ +.+|++..++.
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~ 205 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence 0 11135899999999999987766 99998865443
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.70 E-value=4.6e-07 Score=96.01 Aligned_cols=98 Identities=6% Similarity=-0.023 Sum_probs=66.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC-----CEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DG-----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
..+.|.+||+.+++. ..+..+...+..++||| ||+.||.++.++ ..|.++|+... .. .
T Consensus 166 ~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------~~---~ 229 (388)
T 3pe7_A 166 PCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT------------NM---R 229 (388)
T ss_dssp CCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC------------CC---E
T ss_pred CcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC------------ce---E
Confidence 457899999999865 44456677899999999 999998887642 13666666542 11 1
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCC-C----eEEEEecCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSR-G----TSHLFAINPL 359 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-G----TVhIwdl~~~ 359 (779)
.+..+.....+..++|||||++|+..+.+ + ++++||+...
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 22222111237789999999988776542 2 4999998764
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.60 E-value=3e-07 Score=97.09 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=67.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCC-----EEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGH-----NINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt-----~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
....|.+||+.+++....+ .+...+..+.|+| ||+.|+.++.++. .|.+||+... ...
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------~~~--- 229 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS------------NVR--- 229 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC------------CCE---
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC------------cee---
Confidence 4568999999988765444 5677899999999 8998877765432 3677777543 111
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCC-----CeEEEEecCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSR-----GTSHLFAINPL 359 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-----GTVhIwdl~~~ 359 (779)
.+..+.....+..++|||||++|+.++.+ +++++||+...
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 22121112247889999999998888665 55999998653
No 170
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.57 E-value=7.2e-06 Score=86.94 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=65.6
Q ss_pred CCeEEEEECCCCcEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aH-t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.++|..+++++..+... ......|+|+|||++|..+.. + |.+||..++.... ... +..+
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~----------~~~--~~~~- 265 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPV----------RPF--LEFR- 265 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCS----------SCS--BCCC-
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceee----------eee--ecCC-
Confidence 478999999999888777643 236889999999998887765 4 8899987651100 000 0011
Q ss_pred CcccEEEEEEcCC-CCEEEEE----eCCCeEEEEecC
Q 004015 326 TNAVIQDISFSDD-SNWIMIS----SSRGTSHLFAIN 357 (779)
Q Consensus 326 t~a~I~sIaFSpD-g~~LAtg----S~DGTVhIwdl~ 357 (779)
......|+++|+ ++.+++. ..+++|.+|+..
T Consensus 266 -~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 266 -DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp -SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred -CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 124789999994 5555555 578999999987
No 171
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.57 E-value=1.5e-06 Score=96.32 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec-
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR- 323 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r- 323 (779)
..+|.|.+||+.++.... +...|+|++|||+| ++.|..||+ |++|+.... ......++.+
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~~------------~~~~k~~I~~P 203 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRNG------------EMEKQFEFSLP 203 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEETT------------EEEEEEEECCC
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCCc------------cccccceecCC
Confidence 467999999999887653 45689999999999 677889998 899976543 1110223311
Q ss_pred ---C---CCcccEEEEEEcCCCCEEEEE
Q 004015 324 ---G---LTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 324 ---G---~t~a~I~sIaFSpDg~~LAtg 345 (779)
+ .....|.+|+|.++++||++=
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEEE
Confidence 1 023569999999999999863
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.56 E-value=1.5e-05 Score=92.33 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=122.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-EeCCeEEEEeCC--CCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~--T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
++|.+||+.|++.+.+|.....+..+.++ +++|.+ +.++.|.+||+. +++.+.++....
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---------------- 240 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---------------- 240 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----------------
T ss_pred CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC----------------
Confidence 68999999999999999988788899996 565554 667899999996 888887775321
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+|+.++++.-+ +.+|+.+.
T Consensus 241 ----~P~~ia~s~~~-----------------------~pDGk~l~---------------------------------- 259 (567)
T 1qks_A 241 ----EARSIETSKME-----------------------GWEDKYAI---------------------------------- 259 (567)
T ss_dssp ----EEEEEEECCST-----------------------TCTTTEEE----------------------------------
T ss_pred ----CCceeEEcccc-----------------------CCCCCEEE----------------------------------
Confidence 12344443000 00222210
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc----------CCC-CeEEEEEcCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----------HKS-PISALCFDPSGILLVTAS 287 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a----------Ht~-~IsaLaFSPdG~lLATaS 287 (779)
+....++.|.|+|..+.++++++.. |.. .+..|.+++++..++..-
T Consensus 260 -----------------------v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 260 -----------------------AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp -----------------------EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred -----------------------EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 0112346888999999998887763 222 588999999987665554
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCC
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 360 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~g 360 (779)
.+...|.++|.... ....+..+..+ ....++.|+||++||.++. .+++|.|+|+.+..
T Consensus 317 ~~~g~v~~vd~~~~------------~~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 317 KETGKILLVDYTDL------------NNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp TTTTEEEEEETTCS------------SEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred cCCCeEEEEecCCC------------ccceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 54344888887653 11122233222 2367899999999987766 57899999998753
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.55 E-value=6.9e-07 Score=102.57 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=67.2
Q ss_pred CeEEEEECC-CC---cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC--CCCCCCCCccCCCCceeEEEEe
Q 004015 248 GMVIVRDIV-SK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII--PGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 248 G~V~VwDl~-s~---~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~--~~~~g~~s~~~~~~s~~~l~~l 321 (779)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+. .+ ... .+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~~~------------~~~---~l 280 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPATG------------AAT---QL 280 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTTTC------------CEE---ES
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECCCC------------cee---ec
Confidence 479999998 56 444444566889999999999998888888875 4555543 32 111 11
Q ss_pred ecCCCcc-------cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 322 QRGLTNA-------VIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 322 ~rG~t~a-------~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..+.... .+.+++|+||++++++++. ++++||.+...++
T Consensus 281 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 281 CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 1111110 1467999999999999999 9999997765433
No 174
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.50 E-value=6.4e-06 Score=86.00 Aligned_cols=172 Identities=8% Similarity=0.065 Sum_probs=114.6
Q ss_pred CEEEEEECCCCcEEEEEeCCC--CEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s--~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|.+||.+||+.+.++.... .+.++.+. +++++ +.++.|++||. +++.++++..... . ....
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~---~--------~~~~ 81 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAG---C--------EMQT 81 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTT---C--------EEEE
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCC---c--------cccc
Confidence 679999999999999999864 68888884 77777 77889999999 8999988865210 0 0000
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+ .. .+|.++..
T Consensus 82 ~~-------~~---------------------------~dG~~lv~---------------------------------- 93 (276)
T 3no2_A 82 AR-------IL---------------------------PDGNALVA---------------------------------- 93 (276)
T ss_dssp EE-------EC---------------------------TTSCEEEE----------------------------------
T ss_pred cE-------EC---------------------------CCCCEEEE----------------------------------
Confidence 00 00 02222110
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec------cCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR------AHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~------aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
+....+.|..+|. +++.+..+. .+......++++++|.+|++.+.+++ |
T Consensus 94 -----------------------~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v 148 (276)
T 3no2_A 94 -----------------------WCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-V 148 (276)
T ss_dssp -----------------------EESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-E
T ss_pred -----------------------ecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-E
Confidence 0001233444443 334444433 12224455688999999999988876 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+||.. + ..++++.++ ..+.++++.++|+.+++++.+++|..||..++
T Consensus 149 ~~~d~~-G--------------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 149 REIAPN-G--------------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEECTT-S--------------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEECCC-C--------------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 999976 5 456777654 23567899999999999998888988887664
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.47 E-value=7.7e-06 Score=85.34 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=68.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEE-EEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISA-LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~Isa-LaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
...|.+|| +++....+..|...|.. +.|+ || ++++++.+|+ ++|| +..+ ... .+..+
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l~-~~~g------------~~~---~~~~~- 300 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNLY-IWDG------------EIK---PIAKG- 300 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEEE-EESS------------SEE---EEECS-
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEEE-EcCC------------ceE---EEecC-
Confidence 45788888 66655555677788986 9999 99 9999999986 8999 7632 112 22222
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeE-EEEecCCCCCceeeccCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTS-HLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTV-hIwdl~~~gg~~~~~~H~ 369 (779)
...|.+++|+| +++++++.+++. +||.+. +....+..|.
T Consensus 301 -~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n 340 (347)
T 2gop_A 301 -RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYN 340 (347)
T ss_dssp -SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTT
T ss_pred -CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEecccc
Confidence 24589999999 788888887775 899887 4444454443
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.46 E-value=1.3e-05 Score=84.61 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=72.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEE-------eCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTA-------SVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATa-------S~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
....++.|++||..+++.+.++. .+...+.+++|+| |.++++. +.+.+ |.+|+...+
T Consensus 213 ~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~-v~~~~~~~g------------ 278 (329)
T 3fvz_A 213 ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ-GFVMNFSSG------------ 278 (329)
T ss_dssp EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC-EEEEETTTC------------
T ss_pred EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE-EEEEEcCCC------------
Confidence 33467899999999889988885 5667899999999 5444443 22334 899998765
Q ss_pred ceeEEEEeecCC-CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 314 SYVHLYRLQRGL-TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 314 s~~~l~~l~rG~-t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
..+..+..+. ....+.+|+|+|||..+++...+++|++|++..
T Consensus 279 --~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 --EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred --eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3334442111 112378999999998888888999999999864
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.45 E-value=1.6e-06 Score=99.44 Aligned_cols=97 Identities=13% Similarity=0.237 Sum_probs=68.7
Q ss_pred CeEEEEECCC------CcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCC-------CEEEEEeCC-CCCCCCCCccCCC
Q 004015 248 GMVIVRDIVS------KNVIAQFR-AHKSPISALCFDPSGILLVTASVQG-------HNINIFKII-PGILGTSSACDAG 312 (779)
Q Consensus 248 G~V~VwDl~s------~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DG-------t~I~Vwdi~-~~~~g~~s~~~~~ 312 (779)
..|.+||+.+ ++. ..+. .+...+..++|||||++||.++.++ ..|.+||+. ++
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g----------- 228 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG----------- 228 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS-----------
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC-----------
Confidence 5789999988 554 4555 6667788899999999999887654 458999987 32
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.......+..+. ...+..++|||||+++++++.+++.+||.+..
T Consensus 229 -~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 229 -RFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp -CEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred -cccccEEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence 111222332221 23488999999999888888889666666654
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.45 E-value=4.9e-06 Score=87.80 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=62.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeC---------------CCCEEEEEeCCCCCCCCCCccCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASV---------------QGHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~---------------DGt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
+.|.+||+.+++...... .. .+. +.|+| ||++|++++. ....|.+||+..+
T Consensus 264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~---------- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK---------- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT----------
T ss_pred ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC----------
Confidence 468999998876533221 11 233 89999 9999987652 1235899998764
Q ss_pred CCceeEEEEeecCC-------CcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCCceeec
Q 004015 312 GTSYVHLYRLQRGL-------TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 312 ~~s~~~l~~l~rG~-------t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg~~~~~ 366 (779)
....+... .+. ....+.+++|||||++|+.++. ++...||.+...++...+.
T Consensus 331 --~~~~l~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 331 --SAQKLCKH-STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp --BCCEEEEC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred --ceEEccCC-CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence 12222211 110 0001456899999999988775 5778888877655655553
No 179
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.36 E-value=0.00014 Score=79.30 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=66.1
Q ss_pred CCCeEEEEECCCCc--EEEEeccC----------CCCeEEEEEcCCCCEEEEEeCC---------CCEEEEEeCCCCCCC
Q 004015 246 NVGMVIVRDIVSKN--VIAQFRAH----------KSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGILG 304 (779)
Q Consensus 246 ~dG~V~VwDl~s~~--~v~~f~aH----------t~~IsaLaFSPdG~lLATaS~D---------Gt~I~Vwdi~~~~~g 304 (779)
..|.|.+.|+.+.. .+..+.-. ......++|+|||+.|..+..+ +..|.|+|+.+.
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--- 308 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--- 308 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---
Confidence 45788888987552 33333211 1224458899998877665432 234888898764
Q ss_pred CCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEe-CCCeEEEEecCCCCCc
Q 004015 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGS 362 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS-~DGTVhIwdl~~~gg~ 362 (779)
+.+.++.-|. ....++|||||+ ++.++. .+++|.|||+.+....
T Consensus 309 -----------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 309 -----------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred -----------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 3344444332 367999999999 677766 5899999999876544
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.33 E-value=6.2e-05 Score=77.37 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=60.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~-~~l~~l~rG~t 326 (779)
+.|..+|.. ++ +..+..+......|+|+|||++|++.+.++ .|.+|++... + .. .....+ .. .
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~-~i~~~~~~~~--g---------~~~~~~~~~-~~-~ 216 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDN-ATHRYCLNAR--G---------ETEYQGVHF-TV-E 216 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTT-EEEEEEECSS--S---------CEEEEEEEE-CC-S
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCC-eEEEEEECCC--C---------cCcCCCeEe-eC-C
Confidence 455566655 33 344556667789999999999996665555 4899998621 1 12 111122 11 2
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
...+..|+|++||+++++. ++.|.+|+..
T Consensus 217 ~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 217 PGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 2236689999999976666 8899999975
No 181
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.28 E-value=2.3e-05 Score=82.90 Aligned_cols=93 Identities=8% Similarity=0.014 Sum_probs=63.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEE--EcCCCCEEEEEe----------------------CCCCEEEEEeCCCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALC--FDPSGILLVTAS----------------------VQGHNINIFKIIPGI 302 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLa--FSPdG~lLATaS----------------------~DGt~I~Vwdi~~~~ 302 (779)
++.|.+||+.+++....+..+...+.... ++|||++|+... .+ ..|.+||+.++
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~g- 178 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC-CRLMRVDLKTG- 178 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC-EEEEEEETTTC-
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc-ceEEEEECCCC-
Confidence 35789999999887777776666554444 599999998532 22 34888898765
Q ss_pred CCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCC------eEEEEecC
Q 004015 303 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRG------TSHLFAIN 357 (779)
Q Consensus 303 ~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DG------TVhIwdl~ 357 (779)
....+.. + ...+..++||| ||++||..+.++ .+.++++.
T Consensus 179 -----------~~~~l~~---~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 179 -----------ESTVILQ---E--NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp -----------CEEEEEE---E--SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred -----------ceEEeec---C--CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 2222221 1 23478999999 999999888743 55555654
No 182
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.21 E-value=0.00016 Score=74.07 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=67.7
Q ss_pred CCCeEEEEECC-CCc-----EEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 246 NVGMVIVRDIV-SKN-----VIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 246 ~dG~V~VwDl~-s~~-----~v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.++.|.+||+. +++ ....+..+. ..+..|+|+++|.++++...++. |.+||..++ .....
T Consensus 196 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~~g------------~~~~~ 262 (314)
T 1pjx_A 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPDGG------------QPKMR 262 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTTCB------------SCSEE
T ss_pred CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCCCC------------cEeEE
Confidence 46789999986 443 344555554 56888999999999998877765 899987643 11122
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCC
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPL 359 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~ 359 (779)
+.+ . ...+.+++|+||+++|.++ ..++.|.+|++...
T Consensus 263 ~~~--~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 263 IRC--P--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEC--S--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EeC--C--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 222 1 1348999999999965555 45689999998754
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.19 E-value=4.4e-05 Score=79.57 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=52.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC------EEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH------NINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt------~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
...|.+||+.+++.+..+.. . .+..++|+||| ++++++.++. ...||.+..+ ....+.
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~------------~~~~l~- 214 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG------------KEEKMF- 214 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT------------EEEEEE-
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC------------ceEEec-
Confidence 35799999999877555555 3 78899999999 8888876531 2456655432 122222
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.+ ..+..+ ||||++|+.++.++
T Consensus 215 --~~---~~~~~~--spdg~~l~~~~~~~ 236 (347)
T 2gop_A 215 --EK---VSFYAV--DSDGERILLYGKPE 236 (347)
T ss_dssp --EE---ESEEEE--EECSSCEEEEECCS
T ss_pred --cC---cceeeE--CCCCCEEEEEEccc
Confidence 11 224443 99999999888654
No 184
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.16 E-value=2e-05 Score=87.28 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=71.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+|.|++||+.+......+..|..+|.++.+.+.. +|+++.||+ +.+||+..+ ... .+.
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~~--------------~~~-~~~--- 162 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRTK--------------STK-QLA--- 162 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTTC--------------CEE-EEE---
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccCC--------------ccc-ccc---
Confidence 45789999999887777788889999999988763 888899997 899999865 111 121
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..|.++||||+| ++.|..||++++|+....
T Consensus 163 --~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 163 --QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp --ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred --CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence 249999999999 788999999999977554
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.14 E-value=0.00013 Score=77.02 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=65.7
Q ss_pred CCeEEEEECCCCc-EEEEe---------ccCCCCeEEEEEcC-CCCEEEEEe-CCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 247 VGMVIVRDIVSKN-VIAQF---------RAHKSPISALCFDP-SGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 247 dG~V~VwDl~s~~-~v~~f---------~aHt~~IsaLaFSP-dG~lLATaS-~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
++.|++||..... .+..+ ..+......|+|+| +|.++++.+ .++ .|++|+. .+
T Consensus 111 ~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~-~I~~~~~-~g------------- 175 (329)
T 3fvz_A 111 LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS-RIVQFSP-SG------------- 175 (329)
T ss_dssp TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC-EEEEECT-TS-------------
T ss_pred CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC-eEEEEcC-CC-------------
Confidence 4567777765442 44555 34556789999999 899999886 455 4899983 32
Q ss_pred eeEEEEee-cCC-------CcccEEEEEEcCC-CCEEEEEeCCCeEEEEecCCC
Q 004015 315 YVHLYRLQ-RGL-------TNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 315 ~~~l~~l~-rG~-------t~a~I~sIaFSpD-g~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+..+. .|. .-.....|+|+|| ++++++...+++|++|+..+.
T Consensus 176 -~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G 228 (329)
T 3fvz_A 176 -KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK 228 (329)
T ss_dssp -CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred -CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence 1222221 111 0112789999999 777788888999999999754
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.14 E-value=0.00068 Score=70.32 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=60.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCCEEEEEeCCCCCCCCCCccCCCCceeE-----EEEe
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVH-----LYRL 321 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATa-S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~-----l~~l 321 (779)
+.|..||..+++... +..+...+..++|+|||++|..+ +.++ .|.+||+... +. .... ...+
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~-~i~~~d~~~~--g~--------~~~~~~~~~~~~~ 229 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTAN-RLHRIALEDD--GV--------TIQPFGATIPYYF 229 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGT-EEEEEEECTT--SS--------SEEEEEEEEEEEC
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCC-eEEEEEecCC--Cc--------CcccccceEEEec
Confidence 456666665544332 22333457899999999866544 4455 4899998641 00 0111 1111
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.+. ..+..|+|++||+++++...++.|.+|+..
T Consensus 230 -~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 230 -TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 111 247889999999988888888999999873
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.14 E-value=5.1e-05 Score=88.72 Aligned_cols=98 Identities=6% Similarity=-0.036 Sum_probs=63.2
Q ss_pred CCeEEEEECCC------Cc-EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCccCCCCcee
Q 004015 247 VGMVIVRDIVS------KN-VIAQFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 247 dG~V~VwDl~s------~~-~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt---~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
+..|.+||+.+ +. .+..+..|...+.. .|+|+|+.|+..+.++. .|.+||+..+.. ....
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------~~~~ 327 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE---------SKWK 327 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG---------GGCE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------ccce
Confidence 35788888876 43 45667777776665 59999998877665432 477888765300 0012
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
. +........|.+++|++++.++++...|+..+||.+.
T Consensus 328 ~---l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 328 V---LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp E---EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred e---ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence 2 2122111348889999888899999999976666554
No 188
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.11 E-value=6.3e-06 Score=88.97 Aligned_cols=98 Identities=7% Similarity=0.012 Sum_probs=74.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~----------DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
.++.|.+||..+++.+.++..+..+ .|+|+|||++|.+++. ++ .|.+||+.+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~-~v~v~d~~t~-------------- 91 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSD-VVEVWDADKL-------------- 91 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEE-EEEEEETTTC--------------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCC-EEEEEECcCC--------------
Confidence 4689999999999999999988777 8999999999998863 33 4899998764
Q ss_pred eEEEEeecCC----CcccEEEEEEcCCCCEEEEEeC--CCeEEEEecCCCC
Q 004015 316 VHLYRLQRGL----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLG 360 (779)
Q Consensus 316 ~~l~~l~rG~----t~a~I~sIaFSpDg~~LAtgS~--DGTVhIwdl~~~g 360 (779)
..+.++.-+. .......++|||||++|.+++. +++|.|||+.+..
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 2223332110 0112457999999999999874 6899999998763
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.08 E-value=0.00026 Score=78.25 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=69.4
Q ss_pred CCCCeEEEEECCCCc--EEEEec---------c-CCCCeEEEEEcCCCCEEEEEeCC---------CCEEEEEeCCCCCC
Q 004015 245 DNVGMVIVRDIVSKN--VIAQFR---------A-HKSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGIL 303 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~--~v~~f~---------a-Ht~~IsaLaFSPdG~lLATaS~D---------Gt~I~Vwdi~~~~~ 303 (779)
...|.|.+.|+.+.. .+..+. + .-..+..++++|+++.|..+..+ ++.|-++|+.+.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-- 321 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-- 321 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--
Confidence 346899999997664 333222 0 11234458889999988776431 345788898875
Q ss_pred CCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEe-CCCeEEEEecCCCCCceee
Q 004015 304 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 304 g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS-~DGTVhIwdl~~~gg~~~~ 365 (779)
+.+.++.-| ..++.|+||+|++ +|.++. .+++|.|+|..++....++
T Consensus 322 ------------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 322 ------------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp ------------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ------------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 334444333 2478999999997 666654 4899999999987655455
No 190
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.06 E-value=0.0019 Score=66.90 Aligned_cols=89 Identities=7% Similarity=0.070 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
...+.|+|+|||+.|..++.....|.+|++... .+.. ...+.+..+.. .......+++++||++.++....
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~-~G~~------~~~~~~~~~~~--~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ-TGQI------SNRRSVYKLEK--EEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT-TCCE------EEEEEEEECCG--GGCEEEEEEEBTTSCEEEEEETT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCC-CCcc------cCcEEEEECCC--CCCCCCeeEECCCCCEEEEEcCC
Confidence 446789999999977555543345899987421 1110 01112222221 11347789999999988888888
Q ss_pred CeEEEEecCCCCCceeec
Q 004015 349 GTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 349 GTVhIwdl~~~gg~~~~~ 366 (779)
++|.+|+..+......+.
T Consensus 220 ~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TEEEEECTTTCCEEEEEE
T ss_pred CEEEEEcCCCceEEEEEE
Confidence 999999887544333443
No 191
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.03 E-value=0.00033 Score=76.78 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=44.4
Q ss_pred EEEEEECCCCcEEEEEeCC-CCEEEEEEc--CcEEEEEe-----------CCeEEEEeCCCCcEEEEEec
Q 004015 65 VVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 65 tVrIWDL~Tge~V~tLkf~-s~V~sV~~s--~rlLaVs~-----------d~~I~IwD~~T~e~l~tl~t 120 (779)
+|.++|+.|++.+.++... .+ .+.++ ++.|.|+. ++.|.+||+.|++.+.++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 7999999999999999863 45 68886 55565553 57899999999999999864
No 192
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.02 E-value=2.1e-06 Score=93.25 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=48.6
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+|.|..||..+++.+..+..+. ...++|++.+|++++.+|+ |..||..++ ..++++..+
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG--------------~~~W~~~~~ 159 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTR--------------ELRWNATYF 159 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSS--------------SCCCEEEEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCC--------------CEEEeEecc
Confidence 456889999999999988887664 2467788999999998886 899998876 112222111
Q ss_pred CCcccEEEEEEcCCC---CEEEEEeCCCeEEEEecCCCC
Q 004015 325 LTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg---~~LAtgS~DGTVhIwdl~~~g 360 (779)
. ....+++.+. ..+.+++.||.++.||..++.
T Consensus 160 ~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 160 D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred c----ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 0 1233445543 557788999999999998653
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.00 E-value=0.00025 Score=71.07 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=68.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.+.|.+||..+.........+...+..|+|+++|.++++...++. |.+|+.... ... .....+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~-------------~~~-~~~~~~~- 233 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-------------TST-VLPFTGL- 233 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCS-------------CCE-ECCCCSC-
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCC-------------cce-eeccCCC-
Confidence 357888888776554433344467899999999988888776766 899987542 111 1111121
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+.+|+|++||+++++.+.+++|++|++...
T Consensus 234 -~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 234 -NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp -SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred -CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 24789999999999889999999999998653
No 194
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.98 E-value=0.00043 Score=70.34 Aligned_cols=94 Identities=10% Similarity=0.103 Sum_probs=68.5
Q ss_pred CCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
++.|.+|| .+++.+..+. .+...+.+|+|+|+|+++++...++. |.+||... ..+..+....
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~g---------------~~~~~~~~~~ 161 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR-VIIFDQNG---------------NVLHKFGCSK 161 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE-EEEECTTS---------------CEEEEEECTT
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCE-EEEEcCCC---------------CEEEEeCCCC
Confidence 46788999 5666777775 34567899999999998888776665 89998532 1222332111
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
....+..|+|++||+++++.+.+++|++|+..
T Consensus 162 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 193 (286)
T 1q7f_A 162 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 193 (286)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred ccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence 12247899999999988888889999999973
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.92 E-value=0.00066 Score=79.33 Aligned_cols=98 Identities=10% Similarity=0.015 Sum_probs=67.0
Q ss_pred CCeEEEEECCCCc--EEEEeccCCC--CeEEEEEcCCCCEEEEEeCCCCE-EEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 247 VGMVIVRDIVSKN--VIAQFRAHKS--PISALCFDPSGILLVTASVQGHN-INIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 247 dG~V~VwDl~s~~--~v~~f~aHt~--~IsaLaFSPdG~lLATaS~DGt~-I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+.|.+||+.++. ....+..|.. .|..++|++++.+++++..+|.. |.+|++..+ ..+..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------------~~~~~l 375 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------------ALLKIF 375 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------------CEEEEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------------CEEEec
Confidence 3578899998764 2345555654 68889999999999999999852 556666443 122333
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLG 360 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~g 360 (779)
... ...|..++|+||++.|+.+.. .+++++||+.+..
T Consensus 376 ~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 PLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 221 345889999999987764432 4789999997643
No 196
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.86 E-value=0.00047 Score=77.16 Aligned_cols=56 Identities=14% Similarity=-0.038 Sum_probs=44.6
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE-----------eCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-----------QAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs-----------~d~~I~IwD~~T~e~l~tl~t 120 (779)
++|.++|+.|++.+.+|.....- .|.++ ++.|.|+ .++.|.++|+.|++.+.++..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 68999999999999999874333 78996 4555443 256899999999999988853
No 197
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.84 E-value=0.00013 Score=84.40 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=81.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+....++.|.|+|..+++++.++.... .+..+.|||||++|.+++.+|. |.+||+... +...+.++
T Consensus 171 V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~-V~viD~~~~------------t~~~v~~i 236 (567)
T 1qks_A 171 VTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGK-VNMIDLWMK------------EPTTVAEI 236 (567)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSE-EEEEETTSS------------SCCEEEEE
T ss_pred EEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCe-EEEEECCCC------------CCcEeEEE
Confidence 344567999999999999999987443 4668999999999999999886 999998521 11344555
Q ss_pred ecCCCcccEEEEEEc----CCCCEEEEEeCC-CeEEEEecCCCCCceee
Q 004015 322 QRGLTNAVIQDISFS----DDSNWIMISSSR-GTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG~t~a~I~sIaFS----pDg~~LAtgS~D-GTVhIwdl~~~gg~~~~ 365 (779)
.-|. ....++|| |||+|+++++.. +++.|||..+......+
T Consensus 237 ~~G~---~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 237 KIGS---EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp ECCS---EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred ecCC---CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 5453 25689999 799999888764 99999998775444333
No 198
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.83 E-value=0.0032 Score=66.16 Aligned_cols=175 Identities=13% Similarity=0.119 Sum_probs=114.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCC--EEEEEEcCcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP--IYSVRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~--V~sV~~s~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.+|+++|++||+.+.++..+.. ...+.+.++.|.++ .++.|.+||+.|++.+.++..- .+. +
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------g--- 109 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------G--- 109 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------C---
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------e---
Confidence 6899999999999999987543 34566665555554 3789999999999998888431 000 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
++ |++ +|..
T Consensus 110 ~g-----lt~-----------------------------Dg~~------------------------------------- 118 (266)
T 2iwa_A 110 WG-----LAT-----------------------------DGKI------------------------------------- 118 (266)
T ss_dssp CE-----EEE-----------------------------CSSS-------------------------------------
T ss_pred EE-----EEE-----------------------------CCCE-------------------------------------
Confidence 11 111 1110
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc--CC---CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HK---SPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a--Ht---~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
+..++.+++|.++|..+.+.+..+.- +. ..++.|.|. +|++.+....++ .|.
T Consensus 119 ---------------------l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~-~V~ 175 (266)
T 2iwa_A 119 ---------------------LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD-CIA 175 (266)
T ss_dssp ---------------------EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS-EEE
T ss_pred ---------------------EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC-eEE
Confidence 00112357899999999988888772 21 236788998 887766654444 589
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCC----------CcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGL----------TNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPL 359 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~----------t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~ 359 (779)
+.|..++ .+.....+. |. .......|+|+||++.|.++ ...+++.+.++.+.
T Consensus 176 vID~~tg------------~V~~~I~~~-g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKDG------------TLLGWILLP-NLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTTC------------CEEEEEECH-HHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCCC------------cEEEEEECC-CcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9998876 233333332 21 01236899999998765554 46788998888765
No 199
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.82 E-value=0.0024 Score=66.98 Aligned_cols=164 Identities=9% Similarity=0.096 Sum_probs=106.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE--EEEEcCcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY--SVRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~--sV~~s~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|+.+|++||+.+.++..+.... .|.+.++.|-+. .++.+.+||+.|++.+.++..-. .|
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~--------eG------- 129 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG--------EG------- 129 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS--------CC-------
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC--------Cc-------
Confidence 579999999999999999876653 466654444443 37899999999999999885310 00
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+ |++. +..
T Consensus 130 ~g-----lt~d-----------------------------g~~------------------------------------- 138 (262)
T 3nol_A 130 WG-----LTHN-----------------------------DQY------------------------------------- 138 (262)
T ss_dssp CC-----EEEC-----------------------------SSC-------------------------------------
T ss_pred eE-----EecC-----------------------------CCE-------------------------------------
Confidence 11 0110 100
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC--C---CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--K---SPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH--t---~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
+..++..+.|.++|..+.+.+.++.-- . ..++.|.|. +|++.|..-.+ ..|.
T Consensus 139 ---------------------L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~-~~I~ 195 (262)
T 3nol_A 139 ---------------------LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT-NKIV 195 (262)
T ss_dssp ---------------------EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS-SEEE
T ss_pred ---------------------EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC-CeEE
Confidence 011123467999999999888887642 2 345668887 88877655444 4588
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecC--------CCcccEEEEEEcCCCCEEEEEeCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRG--------LTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG--------~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
+.|..++ .+...+.+..- ........|||+|+++.|.+.+..
T Consensus 196 vIDp~tG------------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETG------------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTC------------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCC------------cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 8888776 34444444210 111246889999999988887764
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.80 E-value=0.00052 Score=80.06 Aligned_cols=95 Identities=7% Similarity=0.062 Sum_probs=60.3
Q ss_pred CCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-C--EEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 247 VGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG-H--NINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 247 dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t--~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
...|++|++.++. ++.....|...+..+.|||||++|+.++.++ . .|.+|+...+ ....+.
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~------------~~~~l~ 268 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK------------DFRLLV 268 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS------------SCEEEE
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC------------ceEEee
Confidence 3479999998765 4445556777899999999999998877665 2 2445543221 123322
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~g 360 (779)
. +. ..+....| +||+ |+..+. +++|.+|++...+
T Consensus 269 ~---~~--~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 269 K---GV--GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp E---CS--SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred c---CC--CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 2 11 12445556 6777 555444 5789999987653
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.73 E-value=0.00055 Score=68.50 Aligned_cols=94 Identities=10% Similarity=0.008 Sum_probs=61.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
+.|.+||..+.........+...+..|+|+++|+++++...++. |.+||.... ........+.
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~--------------~~~~~~~~~~-- 191 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAESN--------------NQVVLPFTDI-- 191 (270)
T ss_dssp TEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTTTC--------------CEEECCCSSC--
T ss_pred CEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecCCC--------------ceEeecccCC--
Confidence 45666665444332222233346788999999998887766654 899997643 1111111111
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
..+.+|+++++|+++++...++.|.+|+...
T Consensus 192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp CSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred CCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 3478999999998888877889999998753
No 202
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.73 E-value=0.00011 Score=75.41 Aligned_cols=88 Identities=8% Similarity=0.052 Sum_probs=63.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
...++.|.+||..++ +..+..+...+.+|+|+|+|+++++...++. |.+||..++ ....+.....
T Consensus 46 ~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~-i~~~d~~~g------------~~~~~~~~~~ 110 (296)
T 3e5z_A 46 DVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR-LERQREPGG------------EWESIADSFE 110 (296)
T ss_dssp EGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE-EEEECSTTC------------CEEEEECEET
T ss_pred eCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe-EEEEcCCCC------------cEEEEeeccC
Confidence 345688999999987 6778888889999999999999888766654 899998664 2222222212
Q ss_pred CCCcccEEEEEEcCCCCEEEEEe
Q 004015 324 GLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS 346 (779)
+.....+.+++|+|||+++++.+
T Consensus 111 ~~~~~~~~~i~~d~~G~l~vtd~ 133 (296)
T 3e5z_A 111 GKKLNSPNDVCLAPDGSLWFSDP 133 (296)
T ss_dssp TEECCCCCCEEECTTSCEEEEEC
T ss_pred CCCCCCCCCEEECCCCCEEEECC
Confidence 21122367899999999988743
No 203
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.72 E-value=0.00025 Score=75.37 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=43.8
Q ss_pred CEEEEEECCCCcEEEEEeCC-------CCEEEEEEc--CcEEEEE-----eCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFR-------SPIYSVRCS--SRVVAIC-----QAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~-------s~V~sV~~s--~rlLaVs-----~d~~I~IwD~~T~e~l~tl~t 120 (779)
.+|.+||+++++.++++.++ +.+.+|+++ +..+.++ .+..|++||+.+++....+..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 67999999999999999874 246888996 3454443 467999999999887666644
No 204
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.70 E-value=0.0022 Score=72.29 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC---------c---ccEEEEEEc
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT---------N---AVIQDISFS 336 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t---------~---a~I~sIaFS 336 (779)
.....|.+||||++|-.+......|.+||+... + ..+.+..+.-|-. . ..-+.+++|
T Consensus 321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~--~---------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP--F---------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp CCCCCEEECTTSCEEEEEETTTTEEEEEECSST--T---------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred CceeEEEECCCCCEEEEEeCCCCEEEEEEecCC--C---------CcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 346789999999999888876667999998632 0 1233444443311 0 013689999
Q ss_pred CCCCEEEEEe------------CCCeEEEE--ecCCCCCceeec
Q 004015 337 DDSNWIMISS------------SRGTSHLF--AINPLGGSVNFQ 366 (779)
Q Consensus 337 pDg~~LAtgS------------~DGTVhIw--dl~~~gg~~~~~ 366 (779)
|||++|.++. .+..+.++ ++.+.+| .++.
T Consensus 390 pDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~ 432 (462)
T 2ece_A 390 RDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEID 432 (462)
T ss_dssp TTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEE
T ss_pred CCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeC
Confidence 9999999999 23344454 7787777 5553
No 205
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.69 E-value=0.0025 Score=75.01 Aligned_cols=57 Identities=4% Similarity=-0.008 Sum_probs=42.1
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
|..||+.++ +.++++..+. .+....++.++..+++++.||++++||+.+....-.+.
T Consensus 459 l~A~D~~tG--------------~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 459 LLAWDPVAQ--------------KAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEETTTT--------------EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCC--------------cEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 777887765 4566654432 24566688889999999999999999999876555554
No 206
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.69 E-value=0.00028 Score=73.49 Aligned_cols=97 Identities=10% Similarity=0.138 Sum_probs=75.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++.+..++.|.+||..+++.+.++..|. ..+.++.++|+|++|++ .++. |..||. ++ ..++
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~-V~~~d~-~G--------------~~~W 69 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKG-AKMITR-DG--------------RELW 69 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSE-EEEECT-TS--------------CEEE
T ss_pred EEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCC-EEEECC-CC--------------CEEE
Confidence 4556788999999999999999999876 57899999999999994 3433 889987 54 4566
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEec
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAI 356 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl 356 (779)
++..+. ...+.++.+.+||++|++.+. ++++..|+.
T Consensus 70 ~~~~~~-~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~ 106 (276)
T 3no2_A 70 NIAAPA-GCEMQTARILPDGNALVAWCGHPSTILEVNM 106 (276)
T ss_dssp EEECCT-TCEEEEEEECTTSCEEEEEESTTEEEEEECT
T ss_pred EEcCCC-CccccccEECCCCCEEEEecCCCCEEEEEeC
Confidence 665431 235889999999999999887 666655553
No 207
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.68 E-value=0.0021 Score=67.61 Aligned_cols=162 Identities=14% Similarity=0.169 Sum_probs=104.7
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE--EEEEc-CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY--SVRCS-SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~--sV~~s-~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|+.+|++||+.+.++ ++.... .|.+. +++.+.. .++.+.+||+.|++.+.++..-+ .|
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~--------eG------- 138 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG--------EG------- 138 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSS--------CC-------
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC--------ce-------
Confidence 56999999999999999 866654 36775 4444433 47899999999999999985310 00
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+ |++. |.
T Consensus 139 wG-----Lt~D-----------------------------g~-------------------------------------- 146 (268)
T 3nok_A 139 WG-----LCYW-----------------------------NG-------------------------------------- 146 (268)
T ss_dssp CC-----EEEE-----------------------------TT--------------------------------------
T ss_pred eE-----EecC-----------------------------CC--------------------------------------
Confidence 11 1111 00
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc--CC---CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HK---SPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a--Ht---~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
.+..++..+.|.++|..+.+.+.+++- +. ..++.|.|. +|++.|..-.+ ..|.
T Consensus 147 --------------------~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s-~~I~ 204 (268)
T 3nok_A 147 --------------------KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS-SDVL 204 (268)
T ss_dssp --------------------EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC-SEEE
T ss_pred --------------------EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC-CeEE
Confidence 001112356899999999988888763 22 245678887 88877655444 4588
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEee---------cCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQ---------RGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~---------rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
+.|..++ .+...+.+. +.........|||+|+++.|.+.+.
T Consensus 205 vIDp~TG------------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATG------------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTC------------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCC------------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 8898776 344445542 1111234688999998777766654
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.62 E-value=0.0017 Score=76.38 Aligned_cols=85 Identities=14% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.|..||+.+++.+.+++. ..++....+..+|.+++.++.||+ +++||+.++ +.++++.-+.
T Consensus 455 ~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~ 518 (677)
T 1kb0_A 455 PFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATG--------------EKLWEAPTGT 518 (677)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCc-EEEEECCCC--------------ceeeeeeCCC
Confidence 348999999999999988863 345555667888889999999987 899999886 4555554332
Q ss_pred CcccEEEEEEcCCCCE-EEEEeC
Q 004015 326 TNAVIQDISFSDDSNW-IMISSS 347 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~-LAtgS~ 347 (779)
. ..-.-+.|++||+. +++.+.
T Consensus 519 ~-~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 519 G-VVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp C-CCSCCEEEEETTEEEEEEEEC
T ss_pred C-cccCCEEEEeCCEEEEEEecc
Confidence 1 11234677889874 444333
No 209
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.54 E-value=0.00093 Score=69.30 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=69.9
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D----Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
...++.|.+||..+++....+..+...+.+|+|+|+|+++++...+ +. |.+||.... ....+
T Consensus 62 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~-i~~~d~~~~------------~~~~~- 127 (333)
T 2dg1_A 62 DVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG-IFAATENGD------------NLQDI- 127 (333)
T ss_dssp ETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE-EEEECTTSC------------SCEEE-
T ss_pred ECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce-EEEEeCCCC------------EEEEE-
Confidence 3456899999999887665554667889999999999999887765 34 888987654 11211
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~g 360 (779)
+........+.+++|+|||+++++... ++...||.+...+
T Consensus 128 -~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 128 -IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp -ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred -EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence 111112235899999999998876654 2345666665543
No 210
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.51 E-value=0.018 Score=59.65 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=44.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE--EEEEc-CcEEEEE-eCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY--SVRCS-SRVVAIC-QAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~--sV~~s-~rlLaVs-~d~~I~IwD~~T~e~l~tl~t 120 (779)
..|+.+|++||+.+.++..+.... .|.+. +++.++. .++.+.+||+.|++.+.++..
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 679999999999999999876653 44554 4444443 478999999999999998853
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.50 E-value=0.012 Score=64.59 Aligned_cols=106 Identities=8% Similarity=-0.018 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCcEEEE----eccCCCC--eEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 247 VGMVIVRDIVSKNVIAQ----FRAHKSP--ISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~----f~aHt~~--IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++.|..||..++..... ..++... .+.|+|+|+ |.++++-... +.|..|+.... ...+.
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-~~I~~~~~~g~-------------~~~~~ 304 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-SSVYKITPDGE-------------CEWFC 304 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT-TEEEEECTTCC-------------EEEEE
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC-CEEEEEecCCC-------------EEEEE
Confidence 46788888877653222 2222222 248999995 5555554444 45888875431 11111
Q ss_pred Ee--ecCCC--------cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeecc
Q 004015 320 RL--QRGLT--------NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 320 ~l--~rG~t--------~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~~ 367 (779)
-. ..|.. -.....|+|+|||+++++-+ ..++|++|++.. +....+.+
T Consensus 305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G~v~~~~g 362 (409)
T 3hrp_A 305 GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-GYVSTVAG 362 (409)
T ss_dssp ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT-TEEEEEEE
T ss_pred eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-CEEEEEeC
Confidence 00 00100 12268999999999888877 889999999754 33334433
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.49 E-value=0.047 Score=57.35 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=58.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCC-CCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-TSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g-~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|..+| +++. ..+..+......++|+|||+.|..++.....|.+||+... .+ ... ....+..+. + .
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-~Gl~~~------~~~~~~~~~-~-~ 228 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-TGLPTG------KAEVFIDST-G-I 228 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-TCCBSS------CCEEEEECT-T-S
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-cCCccc------CceEEEECC-C-C
Confidence 4455556 3433 2333333456789999999977665544345899997521 11 100 112222221 1 1
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+..+++++||++.++...++.|.+|+.
T Consensus 229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 123678999999998877777888999987
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.47 E-value=0.0075 Score=70.88 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=62.0
Q ss_pred CCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC----CEEEEEeCCCCCCCCCCccCCCCc-eeE
Q 004015 247 VGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTS-YVH 317 (779)
Q Consensus 247 dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG----t~I~Vwdi~~~~~g~~s~~~~~~s-~~~ 317 (779)
...|.+|++.++. .+.....|...+..+.|||||++|+..+.++ ..|.+||+..+ ... ...
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~----------~~~~~~~ 311 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG----------KIGPVTA 311 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT----------EECCCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC----------CCcccEE
Confidence 3468889987664 3333334445688999999999998877654 35888887643 001 122
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCC----eEEEEecCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPL 359 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG----TVhIwdl~~~ 359 (779)
+..+. .. +... ++|||++|+..+.++ .+.+|++...
T Consensus 312 ---l~~~~-~~-~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 312 ---LIPDL-KA-QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp ---EECSS-SS-CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred ---ecCCC-Cc-eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 22221 12 3333 359999999988754 4889998764
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.46 E-value=0.00044 Score=76.42 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=74.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
++.|.++|..+++.+.++..-..+ . |+|||||++|..++. +...|.+||..+. ..
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--------------~v 121 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--------------LP 121 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CE
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------eE
Confidence 579999999999999999866666 4 999999998877652 1234999999875 22
Q ss_pred EEEeecCC-----CcccEEEEEEcCCCCEEEEEeC--CCeEEEEecCCCCCceee
Q 004015 318 LYRLQRGL-----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 318 l~~l~rG~-----t~a~I~sIaFSpDg~~LAtgS~--DGTVhIwdl~~~gg~~~~ 365 (779)
+.++.-+. ....-..++|||||++|.+++. +++|.|+|+.+..-...+
T Consensus 122 ~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI 176 (386)
T 3sjl_D 122 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 176 (386)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 33332111 1112346999999999998874 689999999886443333
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.46 E-value=0.0037 Score=73.58 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=63.9
Q ss_pred CCeEEEEECCCC--cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 247 VGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 247 dG~V~VwDl~s~--~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
.+.|.+||+.++ .....+..+...+..++|+ ++.++++...+|. .+||.+... + ..+..+.-
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~--g-----------~~~~~l~~- 403 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD--G-----------KPAGAVSL- 403 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT--S-----------CEEEECBC-
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC--C-----------CceeeccC-
Confidence 467889998874 3444455555667788888 7788899999986 677765421 0 12223321
Q ss_pred CCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~ 359 (779)
.....|..++|+||++.|+.... .+++++||+.+.
T Consensus 404 ~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 404 PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 11234889999999987664432 478999998653
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.41 E-value=0.019 Score=60.37 Aligned_cols=85 Identities=15% Similarity=0.206 Sum_probs=53.8
Q ss_pred CCeEEEEECC--CC-c-----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 247 VGMVIVRDIV--SK-N-----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 247 dG~V~VwDl~--s~-~-----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+.|.+||+. ++ . .+..+..+......++++++|.++++....+. |.+|+.. + ..+
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~~-g--------------~~~ 263 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDTD-G--------------NHI 263 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECTT-C--------------CEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECCC-C--------------CEE
Confidence 3566777764 33 2 23344444456788999999998887765554 8888863 2 122
Q ss_pred EEeecCCCcccEEEEEEc-CCCCEEEEEeCCC
Q 004015 319 YRLQRGLTNAVIQDISFS-DDSNWIMISSSRG 349 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFS-pDg~~LAtgS~DG 349 (779)
..+.-. ...+.+++|+ +|++.|.+++.++
T Consensus 264 ~~i~~~--~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 264 ARYEVP--GKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEECS--CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEECC--CCCcEEEEEecCCCCEEEEEecCC
Confidence 222211 2348999998 9998887666543
No 217
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.37 E-value=0.032 Score=55.84 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.+||. +++.... +..+...+..|+|+++|+++++...++. |.+||. .+ ... .+.+..
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g------------~~~-~~~~~~-- 222 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SG------------EIT-EFKIPT-- 222 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------CEE-EEECSS--
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CC------------cEE-EEECCC--
Confidence 356777777 5544332 3344567889999999998887665554 889987 44 111 222221
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
....+.+|+++++|+++++...++.|.+|+.
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 1234889999999997777667899999987
No 218
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.35 E-value=0.031 Score=55.95 Aligned_cols=92 Identities=9% Similarity=0.035 Sum_probs=62.0
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.+||. +++... .+..+...+..|+++++|+++++...++. |.+||. .+ .... +.+..+
T Consensus 119 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g------------~~~~-~~~~~~- 181 (299)
T 2z2n_A 119 GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA-IGRITE-SG------------DITE-FKIPTP- 181 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE-EEEECT-TC------------CEEE-EECSST-
T ss_pred CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE-EEEEcC-CC------------cEEE-eeCCCC-
Confidence 356777777 433322 22334567899999999999887766554 788887 43 1111 222211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+.+++++++|+++++...++.+.+|+.
T Consensus 182 -~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 182 -ASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp -TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred -CCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 234789999999998777777889999987
No 219
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.33 E-value=0.00088 Score=78.14 Aligned_cols=110 Identities=9% Similarity=0.009 Sum_probs=70.4
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCe--EEEEEcCCCCEEEEEeCCCC------------EEEEEeCCCCCCCCCCccC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPI--SALCFDPSGILLVTASVQGH------------NINIFKIIPGILGTSSACD 310 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~I--saLaFSPdG~lLATaS~DGt------------~I~Vwdi~~~~~g~~s~~~ 310 (779)
..+..|+|||+.+++.+. ..+...+ ..++|+|||+.|+.++.+.. .|.+|++.++.
T Consensus 144 ~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~-------- 213 (695)
T 2bkl_A 144 ADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP-------- 213 (695)
T ss_dssp CSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG--------
T ss_pred CceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc--------
Confidence 345789999999988651 1122222 67999999999999988653 38999987640
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC--eEEEEecCCC-CCceeeccC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG--TSHLFAINPL-GGSVNFQPT 368 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG--TVhIwdl~~~-gg~~~~~~H 368 (779)
.....++... .....+.+++|||||++|++++.++ +..||-+... +....+..+
T Consensus 214 --~~~~lv~~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 214 --SKDTVVHERT--GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp --GGCEEEECCC--CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred --hhceEEEecC--CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 0113333321 1123478999999999999988776 4444444332 234445444
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.33 E-value=0.017 Score=65.00 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC--e-EEEEEcCCCCEEEEEe------------------CCCCEEEEEeCCCCCC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSP--I-SALCFDPSGILLVTAS------------------VQGHNINIFKIIPGIL 303 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~--I-saLaFSPdG~lLATaS------------------~DGt~I~Vwdi~~~~~ 303 (779)
...|.|.++|..+.+++.+++.-..+ + ..+-|+|+++.|+|+. ..+..|.+||+..+
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-- 238 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-- 238 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--
Confidence 34588999999999999999733222 2 2478899999999986 34667999999864
Q ss_pred CCCCccCCCCceeEEEEeecCCCcccEEEEEE--cCCCCEEEEEe------CCCeEEEEecCC
Q 004015 304 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISF--SDDSNWIMISS------SRGTSHLFAINP 358 (779)
Q Consensus 304 g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaF--SpDg~~LAtgS------~DGTVhIwdl~~ 358 (779)
..+.++.-|........|.| +||++++.+++ .+++|.+|....
T Consensus 239 ------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 239 ------------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ------------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 34445544422122445655 99999988887 567999988864
No 221
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.30 E-value=0.025 Score=66.65 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=40.6
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|..||+.++ +.++++..+. .+..-.++..+..|++++.||.+++||..++...-.++.
T Consensus 457 l~A~D~~tG--------------~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 457 LIAWDPVKQ--------------QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEETTTT--------------EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCC--------------CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 677777665 4555554432 233446777888999999999999999998755555544
No 222
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.27 E-value=0.0024 Score=69.50 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=68.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.|.+||..+++.+.++..-..+ .++|||||++|..+.. +...|.+||..+. ..+.
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--------------~~~~ 111 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--------------LPIA 111 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--------------cEEE
Confidence 8999999999999988865555 9999999999988863 1234889998764 1222
Q ss_pred EeecC-----CCcccEEEEEEcCCCCEEEEEeC--CCeEEEEecCCC
Q 004015 320 RLQRG-----LTNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPL 359 (779)
Q Consensus 320 ~l~rG-----~t~a~I~sIaFSpDg~~LAtgS~--DGTVhIwdl~~~ 359 (779)
++.-+ .+...-..++|||||++|.+++. +++|.|+| .+.
T Consensus 112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 22111 00011347999999999999884 47899999 654
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.26 E-value=0.013 Score=68.88 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=42.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-----------E-EEEEE-cCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP-----------I-YSVRC-SSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~-----------V-~sV~~-s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.-+|++||+.+.+++.... + ..+.. .+++++.+.++.|+++|+.|++.+.+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 5689999999999999875322 1 12333 35555556799999999999999988865
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.17 E-value=0.12 Score=54.68 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=63.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+..+..+|.|..+|..+++.+..... .....+..+ +..|..++.+|. +..||..++ ..+++
T Consensus 242 v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~tG--------------~~~w~ 302 (376)
T 3q7m_A 242 VFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDGG--------------VTLWT 302 (376)
T ss_dssp EEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTTC--------------CEEEE
T ss_pred EEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCCC--------------cEEEe
Confidence 33445678999999999998877653 334555443 556666677777 889998876 34454
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.... ....+..... .+..|.+++.+|.+++||..++.
T Consensus 303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 4311 0111222222 25678899999999999998753
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.16 E-value=0.31 Score=51.38 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=44.1
Q ss_pred CEEEEEECCCCcEEEEEeCC----------CCEE-EEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecC
Q 004015 64 TVVHFYSLRSQSYVHMLKFR----------SPIY-SVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTN 121 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~----------s~V~-sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~ 121 (779)
+.|..||.++|+.+.+.... ..+. .+... +++++.+.++.|++||+.|++.+.+....
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 57999999999999988873 3333 33344 55555677889999999999998887653
No 226
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.12 E-value=0.098 Score=52.30 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=60.3
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.+||. +++... .+..+...+..|+++++|.++++....+. |.+|+. .+ . ...+.+..+
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~~- 228 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TG------------E-ISEYDIPTP- 228 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------C-EEEEECSST-
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CC------------c-EEEEECCCC-
Confidence 356677776 343332 12234467899999999998887665544 788886 32 1 112222211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+.+|+++++|+..++...++.|.+|+.
T Consensus 229 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 229 -NARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp -TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred -CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 234889999999997777667789999987
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.10 E-value=0.0013 Score=72.09 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=69.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe---------CCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS---------VQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS---------~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.|.|+|..+++.+.++..-..| .+.|||||++|..+. .++..|.+||+.+. ..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------------~vv~ 110 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------------LPIA 110 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------------CEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------CEEE
Confidence 8999999999999999855567 799999999888876 22345999999876 2333
Q ss_pred EeecC--C---CcccEEEEEEcCCCCEEEEEeC--CCeEEE--EecCC
Q 004015 320 RLQRG--L---TNAVIQDISFSDDSNWIMISSS--RGTSHL--FAINP 358 (779)
Q Consensus 320 ~l~rG--~---t~a~I~sIaFSpDg~~LAtgS~--DGTVhI--wdl~~ 358 (779)
++.-+ . .......++|||||+||.++.. ..++.| +|+.+
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 43222 0 0011347999999999999975 467888 88866
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.07 E-value=0.00016 Score=78.31 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=43.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC-eE-EEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSP-IS-ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~-Is-aLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
..+|.|..||..+++.+..++.+... +. +..++ ++.+|++++.+|+ |..||..++ ..++++.
T Consensus 56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~-v~a~D~~tG--------------~~~w~~~ 119 (369)
T 2hz6_A 56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDI-WYVIDLLTG--------------EKQQTLS 119 (369)
T ss_dssp TTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEE-EEEECCC-----------------------
T ss_pred CCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCE-EEEEECCCC--------------cEEEEec
Confidence 35678888888888776666543211 10 01112 3445677777876 899999876 3344443
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.+. .+.++|++..|++++.|++++.||..++..
T Consensus 120 ~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 120 SAF------ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp -------------------EEEEEEEEEEECCCSSSSSC
T ss_pred CCC------cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 221 245678999999999999999999987543
No 229
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.07 E-value=0.029 Score=61.58 Aligned_cols=76 Identities=12% Similarity=0.199 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe--ecCC--------CcccEEEEEEcCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL--QRGL--------TNAVIQDISFSDDS 339 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l--~rG~--------t~a~I~sIaFSpDg 339 (779)
....|+|+|+|.++++-+...+.|++|++..+ .+..+.-. ..|. .-.....|+|++||
T Consensus 324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G------------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG------------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTTCEEEEEETTTT------------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC------------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 46789999999977665504456999997654 11111100 0010 01237899999999
Q ss_pred CEEEEEeCCCeEEEEecC
Q 004015 340 NWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~ 357 (779)
.++++-...++|+.++++
T Consensus 392 ~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEEESTTCEEEEEEEC
T ss_pred CEEEEECCCCeEEEEEeC
Confidence 888888888999988763
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.06 E-value=0.0075 Score=70.02 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=67.3
Q ss_pred CeEEEEECCC--CcE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCC---CCCCCccCCCCceeEEEEe
Q 004015 248 GMVIVRDIVS--KNV-IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI---LGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 248 G~V~VwDl~s--~~~-v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~---~g~~s~~~~~~s~~~l~~l 321 (779)
+.|.|.|.++ ++. +..+..- ...-++.|+|||+++..++.....|.|+|+.+.. .+.. .. .......+
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l---~~--~~~v~~~v 327 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA---DP--RSAVVAEP 327 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC---CG--GGGEEECC
T ss_pred CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc---Cc--ccceEEEc
Confidence 4599999998 555 5666532 2345699999999988888766669999987420 0000 00 00122344
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.-|. .-.-++|+|||....+.-.|++|-+|++..
T Consensus 328 ~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 4443 257899999994445666799999999976
No 231
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.06 E-value=0.11 Score=51.84 Aligned_cols=91 Identities=11% Similarity=0.048 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v-~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|..||.. ++.. ..+......+.+|+++++|+++++....+. |.+|+. .+ ... .+.+...
T Consensus 125 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~~~-~~~~~~~-- 186 (300)
T 2qc5_A 125 DRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS-IGRITN-TG------------KLE-EYPLPTN-- 186 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------CEE-EEECSST--
T ss_pred CeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe-EEEECC-CC------------cEE-EeeCCCC--
Confidence 456666665 3333 123334467899999999997777655554 788886 33 112 1222111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+..|+++++|++.++....+.|.+|+.
T Consensus 187 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 187 AAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 234889999999988877777788988887
No 232
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.06 E-value=0.018 Score=67.39 Aligned_cols=95 Identities=6% Similarity=0.002 Sum_probs=63.3
Q ss_pred CCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 247 VGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 247 dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.+.|.++|+.++.. ...|..|...+. .|+++|..|+....+ |. .|.+|++... ....+.
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---------------~~~~l~ 366 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK---------------RVREVA 366 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC---------------EEEEEC
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC---------------eeEEee
Confidence 36788889887654 345667776665 999999988766554 32 3778887532 122222
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCC----CeEEEEecCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPL 359 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~D----GTVhIwdl~~~ 359 (779)
-. ....+..+++++|++.|+....+ ++++.||+...
T Consensus 367 ~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 367 LP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp CS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred cC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 11 12347788899999988777665 78999998653
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.01 E-value=0.039 Score=64.61 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=43.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCCE------------EEEEE-cCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPI------------YSVRC-SSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V------------~sV~~-s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.-+|++||+.+.+++..... ..+.+ .+++++.+.++.|+++|+.|++.+.++..
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 67899999999999998763221 22333 45555556789999999999999988865
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.00 E-value=0.09 Score=54.28 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=55.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----CEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
+.|..||..+++..... +......|+|+|||+.|..++... ..|.+|++... .......+.
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------------~l~~~~~~~ 234 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------------ALHDRRHFA 234 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------------EEEEEEEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------------CccCCeEEE
Confidence 56777787666543332 334567899999999887776652 35889987643 011111111
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
.. .......|++++||++.++ +.+ .|++|+.
T Consensus 235 ~~-~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~ 265 (305)
T 3dr2_A 235 SV-PDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS 265 (305)
T ss_dssp CC-SSSCCCSEEECTTSCEEEC-CSS-EEEEECT
T ss_pred EC-CCCCCCeEEECCCCCEEEe-cCC-cEEEECC
Confidence 10 1122457899999995544 444 4888776
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.93 E-value=0.078 Score=55.52 Aligned_cols=102 Identities=6% Similarity=-0.074 Sum_probs=67.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee---
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--- 322 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~--- 322 (779)
.++.|.++|..+.+.+.+|..- .+. ...+++||+.|.++...+ .|.++|..+. ..+.++.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~-~l~viD~~t~--------------~v~~~I~Vg~ 146 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTS-ILYEIDPHTF--------------KLIKKHNVKY 146 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSS-EEEEECTTTC--------------CEEEEEECEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCC-eEEEEECCCC--------------cEEEEEEECC
Confidence 4578999999999999998632 111 244667888777766554 4899997764 2222322
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
++..-..+..+.|. |++..+....+++|.+-|..+..-...+
T Consensus 147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence 22211236788898 8876666667889999999876443333
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.90 E-value=0.0027 Score=70.96 Aligned_cols=98 Identities=8% Similarity=0.036 Sum_probs=72.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+.|.++|..+.+.+.++..-..| .|+|||||++|..+.. ++..|.++|..+. ..+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--------------~vv 162 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--------------LPI 162 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--------------cEE
Confidence 79999999999999999865567 8999999998877763 2235899998875 222
Q ss_pred EEeecC-C----CcccEEEEEEcCCCCEEEEEeC--CCeEEEEecCCCCC
Q 004015 319 YRLQRG-L----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGG 361 (779)
Q Consensus 319 ~~l~rG-~----t~a~I~sIaFSpDg~~LAtgS~--DGTVhIwdl~~~gg 361 (779)
.++.-+ . .......++|||||++|.+++. +++|.|.|+.+..-
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 333211 0 0011346899999999999874 58999999987643
No 237
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.88 E-value=0.016 Score=59.89 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=65.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..+.|..||..+++. ..+ .+...+.+|+|+|+|+++++. .+ .|.+||..++ ....+.....+.
T Consensus 33 ~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~~-~~--~l~~~d~~~g------------~~~~~~~~~~~~ 95 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVATI-GT--KFCALNWKEQ------------SAVVLATVDNDK 95 (297)
T ss_dssp TTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEEE-TT--EEEEEETTTT------------EEEEEEECCTTC
T ss_pred CCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEEE-CC--eEEEEECCCC------------cEEEEEecCCCC
Confidence 457899999988765 233 244689999999999977664 33 3889998764 223333332222
Q ss_pred CcccEEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSS---------RGTSHLFAINPLGG 361 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~---------DGTVhIwdl~~~gg 361 (779)
....+.+++|+|||+++++... .....||.+.+.+.
T Consensus 96 ~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 140 (297)
T 3g4e_A 96 KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH 140 (297)
T ss_dssp SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence 2234889999999997766543 24567888876543
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.71 E-value=0.054 Score=63.44 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=57.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+|.|..||+.+++.+..++.+. ++....+...|.+|+.++.||. +++||..++ +.++++.-+
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG--------------~~l~~~~~~ 498 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKG--------------EALWQFEAQ 498 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECS
T ss_pred CccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCccc-chhhhhhcC--------------hhheEecCC
Confidence 356899999999999988877543 3333445567888999999987 899999876 445555433
Q ss_pred CCcccEEEEEEcCCCC-EEEEEeC
Q 004015 325 LTNAVIQDISFSDDSN-WIMISSS 347 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~-~LAtgS~ 347 (779)
.. ..-.-+.+..||+ |+++++.
T Consensus 499 ~~-~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 499 SG-IVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp SC-CCSCCEEEEETTEEEEEEEEC
T ss_pred CC-cccCceEEEECCEEEEEEEec
Confidence 11 0112355667777 6666653
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.62 E-value=0.071 Score=56.02 Aligned_cols=103 Identities=10% Similarity=-0.053 Sum_probs=67.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe-ecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l-~rG 324 (779)
.++.+.+||..+.+.+.+|..-... ..|+ +||+.|..++..+ .|.++|..+. ........ .++
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~-~l~~iDp~T~------------~v~~~I~V~~~g 177 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGT-MLTFHEPDGF------------ALVGAVQVKLRG 177 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSS-EEEEECTTTC------------CEEEEEECEETT
T ss_pred cCCEEEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCC-EEEEEcCCCC------------eEEEEEEeCCCC
Confidence 4578999999999999999853222 2333 6788888777654 4888887764 12221222 223
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..-..+..+.|. ||+..|....+.+|.+-|..+..-...+
T Consensus 178 ~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 178 QPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence 222236778888 8877776667889999888765433333
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.54 E-value=0.062 Score=56.28 Aligned_cols=103 Identities=8% Similarity=0.011 Sum_probs=65.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee-cC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~-rG 324 (779)
.++.+.+||..+.+.+.+|..-... ..+++||+.|..++..+ .|.++|..+. ......... .|
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~-~i~~iDp~T~------------~v~~~I~V~~~g 168 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTP-VLRFLDPESL------------TPVRTITVTAHG 168 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSS-EEEEECTTTC------------SEEEEEECEETT
T ss_pred eCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCC-eEEEEcCCCC------------eEEEEEEeccCC
Confidence 4578999999999999999853322 34446777777766554 4888887764 112212221 12
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.....+..+.|. ||+..|..-.+.+|.+.|..+..-...+
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 111235678887 7887777767889998888765433333
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.54 E-value=0.11 Score=59.61 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=23.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 334 SFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 334 aFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+...+..|.+++.||.+++||..++...-.++
T Consensus 470 ~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 470 TLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 334456677889999999999998765444443
No 242
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.53 E-value=0.075 Score=61.36 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=55.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.|..||+.+++.+..++.+. ++..-.....|.+++.++.||+ |+.||..++ +.+++++-+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~tG--------------~~lW~~~~~~ 527 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAKSG--------------KELWKFQTGS 527 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECCCC--------------CEEEEecCCC
Confidence 46899999999999988876442 2221112224667888999987 899999887 5666665432
Q ss_pred CcccEE--EEEEcCCCC-EEEEEeC
Q 004015 326 TNAVIQ--DISFSDDSN-WIMISSS 347 (779)
Q Consensus 326 t~a~I~--sIaFSpDg~-~LAtgS~ 347 (779)
.|+ -+.|..||+ ||++.+.
T Consensus 528 ---g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 528 ---GIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ---CCCSCCEEEEETTEEEEEEEEC
T ss_pred ---CcccCceEEEECCEEEEEEEcc
Confidence 222 367778887 5555543
No 243
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.33 E-value=0.019 Score=67.14 Aligned_cols=109 Identities=9% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCC------------CEEEEEeCCCCCCCCCCccCCC
Q 004015 246 NVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQG------------HNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DG------------t~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
....|+|||+.+++.+.. +... ....++|+ ||+.|+.++.+. ..|.+|++.+..
T Consensus 153 ~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~---------- 219 (693)
T 3iuj_A 153 DWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ---------- 219 (693)
T ss_dssp CEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCG----------
T ss_pred ceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc----------
Confidence 346899999999986543 2221 12467899 999999888773 347888876540
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC----CeEEEEecCCCC-CceeeccC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPLG-GSVNFQPT 368 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D----GTVhIwdl~~~g-g~~~~~~H 368 (779)
..-..++... ......+.+++|||||++|+..+.+ ..++++++.... ....+..+
T Consensus 220 ~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 220 EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 0113344321 1012236789999999999776543 478999987654 33445444
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.20 E-value=0.44 Score=49.27 Aligned_cols=103 Identities=9% Similarity=-0.036 Sum_probs=65.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe-ecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l-~rG 324 (779)
.++.+.+||..+.+.+.+|+.-... ..+.+||+.|..++.+++ |.++|..+. .......+ ..|
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~-l~~iDp~t~------------~~~~~I~V~~~g 146 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAV-IRKLDPDTL------------QQVGSIKVTAGG 146 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSE-EEEECTTTC------------CEEEEEECEETT
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCe-EEEEeCCCC------------eEEEEEEEccCC
Confidence 4578999999999999999854333 333466777766666554 888987764 11221222 122
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..-..+..+.|. +|+..|..-.+..|.+-|..+..-.-.+
T Consensus 147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence 211236677776 7877766667788888888775443343
No 245
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.18 E-value=0.013 Score=59.68 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCeEEEEECCCCcEEEEec----cCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE-E
Q 004015 246 NVGMVIVRDIVSKNVIAQFR----AHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL-Y 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~----aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l-~ 319 (779)
.++.|.+||..+++...... ++...+.+|+|+++ |+++++...+ .|.+||.. + ....+ .
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~--~l~~~d~~-g------------~~~~~~~ 108 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL--GLLVVQTD-G------------TFEEIAK 108 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT--EEEEEETT-S------------CEEECCS
T ss_pred CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC--CEEEEeCC-C------------CEEEEEe
Confidence 45789999988876542221 25567999999999 8877766544 37889876 4 11111 1
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
....+.....+.+|+|++||+++++...+
T Consensus 109 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 137 (314)
T 1pjx_A 109 KDSEGRRMQGCNDCAFDYEGNLWITAPAG 137 (314)
T ss_dssp BCTTSCBCBCCCEEEECTTSCEEEEECBC
T ss_pred ccCCCccccCCcCEEECCCCCEEEEecCc
Confidence 11111112247899999999988777655
No 246
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.14 E-value=0.028 Score=58.17 Aligned_cols=84 Identities=11% Similarity=-0.077 Sum_probs=56.1
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
...+.|..||.. ++ +..+..+...+..++|+++|+++++...++. |.+|+.. + ....+.....+
T Consensus 64 ~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~-g------------~~~~~~~~~~~ 127 (305)
T 3dr2_A 64 LVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD-G------------QAHLLVGRYAG 127 (305)
T ss_dssp TTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT-S------------CEEEEECEETT
T ss_pred CCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC-C------------CEEEEEeccCC
Confidence 456789999984 44 4566667778999999999997776554444 7888864 3 12222222222
Q ss_pred CCcccEEEEEEcCCCCEEEE
Q 004015 325 LTNAVIQDISFSDDSNWIMI 344 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAt 344 (779)
.....+.+++|+|||+++++
T Consensus 128 ~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 128 KRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp EECSCCCCEEECTTSCEEEE
T ss_pred CccCCCCCEEECCCCCEEEe
Confidence 11123678999999998886
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.08 E-value=0.15 Score=59.29 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=68.3
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--------------CEEEEEeCCCCC----CCCC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--------------HNINIFKIIPGI----LGTS 306 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG--------------t~I~Vwdi~~~~----~g~~ 306 (779)
..++.|.+.|..+.+++.++.--. .-.-++++|||+++.+++.+. ..|.|++..... .|..
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 456889999999999999887322 235588999999999998664 235666543210 0000
Q ss_pred ------CccCCCC--ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCC
Q 004015 307 ------SACDAGT--SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 359 (779)
Q Consensus 307 ------s~~~~~~--s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~ 359 (779)
+.-+... ....+..+.-|.. ..++.|||||+|+.+++ .+.+|.|+|+.+.
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~Ipvg~~---PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred eEECcEEEEeCcccCCceeEEEEecCCC---ceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 0000000 0000111212211 34799999999887776 5789999999854
No 248
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=95.91 E-value=0.08 Score=55.90 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCC-CCEEEEEe---CCCCEEEEEeCCCCCCCCC-----C-ccC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPS-GILLVTAS---VQGHNINIFKIIPGILGTS-----S-ACD 310 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aH------t~~IsaLaFSPd-G~lLATaS---~DGt~I~Vwdi~~~~~g~~-----s-~~~ 310 (779)
.+.|.+||+.+++.+.++..+ ...+..|+|+|+ |.++++-+ .++ .|.+||+.++..... . ..+
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~-~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA-ALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC-EEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC-eEEEEECCCCCEEEEecCCCccccc
Confidence 467999999999877776532 235689999986 55556654 454 489999876411000 0 000
Q ss_pred CC---CceeEEEEeec-CC---CcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 311 AG---TSYVHLYRLQR-GL---TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 311 ~~---~s~~~l~~l~r-G~---t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+. .....++.... |. ....+..|+||||+++|..+..++. +||.+.
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 00 00000000000 00 0012578999999999999888774 566654
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.74 E-value=0.23 Score=57.09 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=51.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.|..||+.+++.+.+++... ++....+...|.++..++.||+ |.+||..++ +.++++.-+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~ 505 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGY-LKALDNKDG--------------KELWNFKMPS 505 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCe-EEEEECCCC--------------CEEEEEeCCC
Confidence 45899999999999988876432 2322333344566777889987 899999876 4566665442
Q ss_pred CcccEEEEEEcCCCCEE
Q 004015 326 TNAVIQDISFSDDSNWI 342 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~L 342 (779)
.. .-.-+.|..||+.+
T Consensus 506 ~~-~~~p~~~~~~G~~y 521 (571)
T 2ad6_A 506 GG-IGSPMTYSFKGKQY 521 (571)
T ss_dssp CC-CSCCEEEEETTEEE
T ss_pred Cc-EeeeEEEEECCEEE
Confidence 11 11224466777643
No 250
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.66 E-value=2.3 Score=46.30 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCCeEEEEECC-------CCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 246 NVGMVIVRDIV-------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 246 ~dG~V~VwDl~-------s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+|.+..|++. +.+.+++|.-- +.+-.+.+++....|..+-++ . -||.+...+.+. .+...+
T Consensus 151 k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~--GIw~~da~p~~~-------~~~~~v 219 (355)
T 3amr_A 151 KEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-E--AIWKFSAEPDGG-------SNGTVI 219 (355)
T ss_dssp SSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-T--EEEEEECSTTSC-------SCCEEE
T ss_pred CCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-c--eEEEEeCCcCCC-------CCceEE
Confidence 34677777662 34667777743 467888899987788888887 3 355554221110 012333
Q ss_pred EEeecCCCcccEEEEEE--cCCCC-EEEEEe-CCCeEEEEecC
Q 004015 319 YRLQRGLTNAVIQDISF--SDDSN-WIMISS-SRGTSHLFAIN 357 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaF--SpDg~-~LAtgS-~DGTVhIwdl~ 357 (779)
..+..+...+.+-.|++ .+|++ ||++++ .+.+.+||+..
T Consensus 220 ~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 220 DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 33322333345778887 67777 777776 67899999996
No 251
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.63 E-value=3.2 Score=45.06 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=49.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEE-cCcEEEEEeCCeEEEEeCCC-CcEEEEEecC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT-LEIEYAILTN 121 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~-s~rlLaVs~d~~I~IwD~~T-~e~l~tl~t~ 121 (779)
.++++|+|+.+.+.+++..++..|.-=+| +.+.|+...+..||-|++.. -+..+.+.-|
T Consensus 86 g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECC
T ss_pred CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecc
Confidence 48899999999999999999999887777 78999999999999999874 3444555444
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.48 E-value=1.7 Score=50.10 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=43.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCE----------EEEEE-cCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPI----------YSVRC-SSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V----------~sV~~-s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
..|.-+|++||+.+.++....+. ..+.. .+++++.+.++.|+++|+.|++.+.+...
T Consensus 78 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 78 SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 34888999999999998864321 22333 35556667899999999999999988765
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.39 E-value=1.2 Score=51.56 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=22.8
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 337 DDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 337 pDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
..+..|.+++.||.++.||..++...-.++
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 356778889999999999998865444443
No 254
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.90 E-value=6.2 Score=44.42 Aligned_cols=204 Identities=12% Similarity=0.145 Sum_probs=115.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEE-cCcEEEEEeCCeEEEEeCCC-CcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~-s~rlLaVs~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
.++++|+|+.+.+.++++.|+..|.-=+| +.+.|+...+..||-|++.. -...+.+.-|++-.+
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~-------------- 150 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-------------- 150 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTT--------------
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhccc--------------
Confidence 57889999999888999988887776666 78888888888899998863 234444444422111
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
.+-+.|..++ +.++.+. .|+.
T Consensus 151 ---~QIInY~~d~-------------------------~~kW~~l----------~GI~--------------------- 171 (494)
T 1bpo_A 151 ---CQIINYRTDA-------------------------KQKWLLL----------TGIS--------------------- 171 (494)
T ss_dssp ---CEEEEEEECT-------------------------TSSEEEE----------EEEE---------------------
T ss_pred ---ceEEEEEECC-------------------------CCCeEEE----------Eeec---------------------
Confidence 1122232111 1111110 0110
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC---CCEEEEEeCC--CCEEEE
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS---GILLVTASVQ--GHNINI 295 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd---G~lLATaS~D--Gt~I~V 295 (779)
. .++.-.|.+.+|....+ .-+.+++|...-..+.+.-+ .++++.|... |..++|
T Consensus 172 ------~--------------~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 172 ------A--------------QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp ------E--------------ETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred ------c--------------cCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 0 00112478899988765 34567788655444444322 2355555553 345899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecC--CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRG--LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG--~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
-++...+.+... + . +....+..- ...---..+..|+.-..+..-+.-|-+|+||+++......-+
T Consensus 231 ~Ei~~~~~~~~~-f----~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 231 IEVGTPPTGNQP-F----P-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp EECSCCCTTCCC-C----C-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCccCCCC-c----c-ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 988542111110 0 1 111222110 001113478888888889999999999999999876554444
No 255
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=94.36 E-value=1.1 Score=45.54 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=59.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+|.|..+|. +++.+..+......+..+.++++|.+.+ ++.+|. |..||. .+ ..++.+.-+
T Consensus 232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~g--------------~~~~~~~~~ 293 (330)
T 3hxj_A 232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-DG--------------TEKWNFETG 293 (330)
T ss_dssp ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-TS--------------CEEEEEECS
T ss_pred cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-CC--------------cEEEEEEcC
Confidence 34567777774 5566677766555566678888887655 555655 778874 33 223333222
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
...+.++.+.+++++ .+++.+|.+++.+....
T Consensus 294 --~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 294 --SWIIATPVIDENGTI-YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp --SCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred --CccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence 233677888888875 56899999999887653
No 256
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=94.27 E-value=0.3 Score=49.80 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=63.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..++.|..||.. ++.+..+......+.++.++++|.+++.. +. |..|| ..+ ..++....
T Consensus 153 gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~-l~~~d-~~g--------------~~~~~~~~ 212 (330)
T 3hxj_A 153 GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DK-VYAIN-PDG--------------TEKWNFYA 212 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SS-EEEEC-TTS--------------CEEEEECC
T ss_pred EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CE-EEEEC-CCC--------------cEEEEEcc
Confidence 4456889999998 88877777666778889999999977765 44 78888 443 23444432
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+ ...+.++++.+||.. .+++.++.+..|+
T Consensus 213 ~--~~~~~~~~~~~~g~l-~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 213 G--YWTVTRPAISEDGTI-YVTSLDGHLYAIN 241 (330)
T ss_dssp S--SCCCSCCEECTTSCE-EEEETTTEEEEEC
T ss_pred C--CcceeceEECCCCeE-EEEcCCCeEEEEC
Confidence 2 234778889998865 4566778888775
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.17 E-value=3.4 Score=47.88 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=42.8
Q ss_pred CEEEEEEC-CCCcEEEEEeCCCC------------EEEEEE---cCc----EEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSL-RSQSYVHMLKFRSP------------IYSVRC---SSR----VVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL-~Tge~V~tLkf~s~------------V~sV~~---s~r----lLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.-+|+ +||+.+.+.+.... ...+.+ .++ +++.+.++.|+++|+.|++.+.....
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 56888999 99999999876432 123444 234 66667789999999999999988754
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=92.78 E-value=5 Score=41.29 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC
Q 004015 271 ISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 340 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~----------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~ 340 (779)
...|+++++|.++++... .+. |.+||.. + .....+....|.....+..+++ .+++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~-v~~~d~~-G------------~~~~~~~~~~g~~~~~~~~~~~-~~g~ 295 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPK-GIKFDEF-G------------NILEVIPLPPPFAGEHFEQIQE-HDGL 295 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEE-EEEECTT-S------------CEEEEEECCTTTTTSCCCEEEE-ETTE
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccE-EEEECCC-C------------CEEEEEECCCCCccccceEEEE-eCCE
Confidence 677999999998877654 222 4555532 1 2233344433432233667777 4666
Q ss_pred EEEEEeCCCeEEEEecCC
Q 004015 341 WIMISSSRGTSHLFAINP 358 (779)
Q Consensus 341 ~LAtgS~DGTVhIwdl~~ 358 (779)
.+++....+.|.+|++..
T Consensus 296 L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEECSSCSEEEEEEC--
T ss_pred EEEeecCCCceEEEeccc
Confidence 666666788999999864
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.77 E-value=10 Score=39.31 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=54.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.++|+........+...-.....|+++|++..|..++... ..|..+++.-. ... .+... .
T Consensus 99 ~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-------------~~~--~~~~~-~ 162 (316)
T 1ijq_A 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIY--SLVTE-N 162 (316)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CEE--EEECS-S
T ss_pred CEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-------------CeE--EEEEC-C
Confidence 4666777665433333333334668999999665554444432 33666665321 122 11111 1
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~ 358 (779)
-.....|+|+++++.|..+. ..++|.++++..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 12367899999877776554 457899999863
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=91.79 E-value=0.48 Score=56.06 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=58.2
Q ss_pred CeEEEEECCCC-cEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCC----CEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 248 GMVIVRDIVSK-NVIA-QFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 248 G~V~VwDl~s~-~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DG----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
..|+++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. ..|.++++.+. . ..-..++..
T Consensus 201 ~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~---~-------~~~~lv~~~ 267 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL---Q-------SEDVCLYEE 267 (751)
T ss_dssp EEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC---G-------GGCEEEEEC
T ss_pred EEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC---c-------hhcEEEEec
Confidence 46999999998 6321 1211 134588999999887776652 23555666442 0 011233332
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCC---CeEEEEecCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPL 359 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~D---GTVhIwdl~~~ 359 (779)
. ......++.|||||++|+..+.+ ..++++++...
T Consensus 268 --~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 268 --H-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp --C-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred --C-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 1 11235689999999999987743 34667777654
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=90.73 E-value=4.8 Score=40.15 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=60.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..+.|.++|+.+......+.........|+|+|++..|..++.....|.++++... ....+ +..+.
T Consensus 56 ~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~------------~~~~~--~~~~~ 121 (267)
T 1npe_A 56 SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT------------QRRVL--FDTGL 121 (267)
T ss_dssp TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEE--ECSSC
T ss_pred CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC------------CEEEE--EECCC
Confidence 35789999988765443333333467899999986666655555455888887532 11122 11221
Q ss_pred CcccEEEEEEcCCCCEEEEEeC---CCeEEEEecC
Q 004015 326 TNAVIQDISFSDDSNWIMISSS---RGTSHLFAIN 357 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~---DGTVhIwdl~ 357 (779)
.....|+|+|++.+|..+.. .+.|.++++.
T Consensus 122 --~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 122 --VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp --SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred --CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 23679999998776655554 3577777764
No 262
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=90.39 E-value=15 Score=36.42 Aligned_cols=73 Identities=10% Similarity=0.026 Sum_probs=44.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-C
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-S 347 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~ 347 (779)
.....|+|+|++..|..++...+.|.++|.... . +..+..+. .....|++. +.+|..+. .
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~--------------~-~~~~~~~~--~~P~gi~~d--~~~lyva~~~ 227 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP--------------G-RRKVLEGL--QYPFAVTSY--GKNLYYTDWK 227 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE--------------E-EEEEEECC--CSEEEEEEE--TTEEEEEETT
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC--------------c-eEEEecCC--CCceEEEEe--CCEEEEEECC
Confidence 456789999998777666666566889987532 1 11111221 123566654 55555555 5
Q ss_pred CCeEEEEecCCCC
Q 004015 348 RGTSHLFAINPLG 360 (779)
Q Consensus 348 DGTVhIwdl~~~g 360 (779)
.+.|.+++.....
T Consensus 228 ~~~v~~~d~~~g~ 240 (267)
T 1npe_A 228 TNSVIAMDLAISK 240 (267)
T ss_dssp TTEEEEEETTTTE
T ss_pred CCeEEEEeCCCCC
Confidence 5789888886543
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=90.38 E-value=22 Score=38.19 Aligned_cols=74 Identities=5% Similarity=-0.044 Sum_probs=43.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE-e
Q 004015 269 SPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-S 346 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DG-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S 346 (779)
.....|+++|++..|.-++... ..|..+++... ..... ...+. ..-..|+|+|+++.|..+ +
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-------------~~~~~-~~~~~--~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-------------GRRII-ADTHL--FWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------SCEEE-ECSSC--SCEEEEEEEGGGTEEEEEET
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-------------CcEEE-EECCC--CCeeeEEEeCCCCEEEEEEC
Confidence 4568899999766555555443 44666665321 11111 11222 235789999877766655 4
Q ss_pred CCCeEEEEecCC
Q 004015 347 SRGTSHLFAINP 358 (779)
Q Consensus 347 ~DGTVhIwdl~~ 358 (779)
..+.|..+++..
T Consensus 266 ~~~~I~~~d~dG 277 (386)
T 3v65_B 266 KHHVIERANLDG 277 (386)
T ss_dssp TTTEEEEECTTS
T ss_pred CCCEEEEEeCCC
Confidence 457788888753
No 264
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=90.09 E-value=34 Score=40.02 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=58.4
Q ss_pred CCCCeEEEEECCCCcEEEEecc--------CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRA--------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~a--------Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
...|-|..||..++........ ....|.+|+.+++|++|-.|..++- +.+||..++ ...
T Consensus 374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~------------~~~ 440 (795)
T 4a2l_A 374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSG------------QVE 440 (795)
T ss_dssp ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTC------------CEE
T ss_pred ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCC------------cEE
Confidence 3445678888877654322211 2357999999999994444555443 788987654 112
Q ss_pred EEEEe-ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 317 HLYRL-QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 317 ~l~~l-~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+ +.. ..+.....|.+|+..++|++.+.+ .+ -+.+|+...
T Consensus 441 ~-~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 441 N-FNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp E-ECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred E-eecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 2 111 001223359999999999855443 44 477777654
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=89.54 E-value=2.5 Score=43.52 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=50.1
Q ss_pred CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 258 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 258 ~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
.+.+..|... .....++|+++|+++++-...++ |..||.... ......+ + .....|+|++
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~g~-------------~~~~~~~--~---~~p~gia~~~ 81 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPDGN-------------QQIHATV--E---GKVSGLAFTS 81 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTTCC-------------EEEEEEC--S---SEEEEEEECT
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCCCc-------------eEEEEeC--C---CCceeEEEcC
Confidence 4566677644 45678999999998777655554 777775421 1222221 2 2478999999
Q ss_pred CCCEEEEEeCCCe--EEEEecC
Q 004015 338 DSNWIMISSSRGT--SHLFAIN 357 (779)
Q Consensus 338 Dg~~LAtgS~DGT--VhIwdl~ 357 (779)
||+++++...... +..|+..
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECT
T ss_pred CCcEEEEeccCCcceEEEEcCC
Confidence 9997666544333 5445543
No 266
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.04 E-value=13 Score=46.38 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=58.9
Q ss_pred CeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.+|+|||+...+.+. .. .+-..|..+...-.|.+++.|+.... |.++..... ...+..+-|...
T Consensus 904 ~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~-------------~~~L~~~a~D~~ 968 (1158)
T 3ei3_A 904 STVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRS-VLLLAYKPM-------------EGNFEEIARDFN 968 (1158)
T ss_dssp TEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBC-EEEEEEETT-------------TTEEEEEEECCS
T ss_pred CEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC-------------CCeEEEEEeecc
Confidence 478888887665443 21 11112333333345778888887643 555543321 124455556655
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+..+++++|=.++ .++.+-.+|.++|+.+.+
T Consensus 969 ~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 969 PNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred cccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 5568899986665 567789999999999976
No 267
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=87.93 E-value=5.1 Score=44.87 Aligned_cols=109 Identities=11% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCCeEEEEECCCCcEEEEeccC----CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAH----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aH----t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+..||.-++.....-+.++.- -..|..|..||+|++||..+.. .|.|-.+..+........ ...... .+.+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~-~~~~~q-~~ty 114 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVS-IQDAFQ-IFHY 114 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHH-HHHTTE-EEEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccc-cccccc-eeEE
Confidence 3467888887744333333321 2367889999999999998876 489999874311110000 000111 2233
Q ss_pred ecCC----CcccEEEEEEcCC---CCEEEEEeCCCeEEEEecCC
Q 004015 322 QRGL----TNAVIQDISFSDD---SNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 322 ~rG~----t~a~I~sIaFSpD---g~~LAtgS~DGTVhIwdl~~ 358 (779)
+-|. ....|..+-|.|- +..|++=..|++|++||+..
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 3232 1356999999994 45799999999999999986
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=87.75 E-value=30 Score=37.96 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=56.9
Q ss_pred CCCeEEEEECCCCcEEEEe-ccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe--
Q 004015 246 NVGMVIVRDIVSKNVIAQF-RAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-- 321 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f-~aH-t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l-- 321 (779)
..+.|..+|..++.....+ ... ...-..|+|+|+|.+|..++...+.|..++.... .+... ....+.-.
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~-~~~~~------~~~~~ag~~g 320 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE-TGKLA------VPYIVCGQHS 320 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT-TCCBC------CCEEEEECTT
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC-CcccC------cEEEEEecCC
Confidence 3467888888766552222 211 1223469999999977767776677888776531 00000 00000000
Q ss_pred ecCC--------CcccEEEEEE---------cCCCCEEEEEeCCCeEEEEe
Q 004015 322 QRGL--------TNAVIQDISF---------SDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 322 ~rG~--------t~a~I~sIaF---------SpDg~~LAtgS~DGTVhIwd 355 (779)
..|. .-..-..|+| .+++.+.++-+..+.|++++
T Consensus 321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 0010 0112568999 77787777766677888876
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=86.79 E-value=34 Score=36.04 Aligned_cols=95 Identities=5% Similarity=-0.044 Sum_probs=52.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.+.|+........+...-.....|+++|++..|.-++... ..|..+++... ..... +..+.
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-------------~~~~~-~~~~~- 202 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-------------GRRII-ADTHL- 202 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------SCEES-CCSSC-
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-------------CcEEE-EECCC-
Confidence 4566666654433222333334568899999655554444433 34666665421 11110 11121
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~ 358 (779)
..-..|+|+|+++.|..+. ..++|..+++..
T Consensus 203 -~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 203 -FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2357899999777666554 457888888753
No 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=86.07 E-value=36 Score=35.58 Aligned_cols=95 Identities=9% Similarity=0.052 Sum_probs=53.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.++|+........+......-..|+++|.+.+|.-++. ....|..+++.-. ....+ +..+.
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~------------~~~~~--~~~~l- 165 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS------------SRFII--INSEI- 165 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC------------SCEEE--ECSSC-
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC------------CeEEE--EECCC-
Confidence 46667776654322223233345688999997555554443 2233555554321 11111 11222
Q ss_pred cccEEEEEEcCCCCEEEEE-eCCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMIS-SSRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~ 358 (779)
..-..|+|+|+++.|..+ +..+.|..+++..
T Consensus 166 -~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 166 -YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 225789999987776655 4567888888853
No 271
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=85.91 E-value=59 Score=37.95 Aligned_cols=97 Identities=16% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCCeEEEEECCCCcEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFRA-------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~a-------Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
..+-|.+||..+... ..+.. ....|.+|..+++|.+.+. +.+|- |..|+..+. ...+
T Consensus 328 ~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~~~G-l~~~~~~~~------------~~~~- 391 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TNDGG-LNLYNPITQ------------RFTS- 391 (795)
T ss_dssp SSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ESSSC-EEEECTTTC------------CEEE-
T ss_pred CCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-ECCCC-eEEEcCCCC------------cEEE-
Confidence 344566676654432 22221 2356999999999998774 44433 788887653 1222
Q ss_pred EEeec-----CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 319 YRLQR-----GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 319 ~~l~r-----G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+.... +.....|.+++..++++.|-+|+.++-+.+|+...
T Consensus 392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 21111 22234599999999998556677777788888765
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=85.19 E-value=43 Score=35.76 Aligned_cols=101 Identities=9% Similarity=-0.074 Sum_probs=55.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
+.|..+|+........+...-..-+.|+|+|++..|..++.....|..+|+... ..+.+. ..+.
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~--~~~~-- 288 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAVI--SQGL-- 288 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC------------SCEEEE--CSSC--
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC------------eeEEEE--ECCC--
Confidence 455666655433222222223346789999987777777776666788876421 112221 1221
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.....|++ .++..+.+-...+.|..++..++.....+
T Consensus 289 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 289 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 23567888 34444455556677777775444333333
No 273
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=84.67 E-value=8.9 Score=39.38 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.|..||..+++....... ......|+|+|+|++|..+......|.+|++.....+ ....+..+ .
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~---------~~~~~~~~-~-- 229 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG---------TAEVLVKI-P-- 229 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT---------CEEEEEEC-S--
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC---------ccceEEeC-C--
Confidence 457888899877654322221 1234569999999966666544345888987642100 11222221 1
Q ss_pred CcccEEEEEEcCCCCEEEEEeC
Q 004015 326 TNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
. ...|++.++|++.++...
T Consensus 230 --g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 230 --N-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp --S-EEEEEECTTSCEEEEEEE
T ss_pred --C-CCCeEECCCCCEEEEecC
Confidence 2 567999999987666544
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=84.62 E-value=48 Score=35.74 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=55.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.+.|+........+...-.....|+++|.+.+|.-++. +...|..+++.-. ..... +..+.
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-------------~~~~~-~~~~l- 245 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIYSL-VTENI- 245 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-------------SCEEE-ECSSC-
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-------------ccEEE-EECCC-
Confidence 46677777655444334433445789999996555544443 2123666665421 11111 11221
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~ 358 (779)
.....|+|+++++.|..+- ..++|..+++.-
T Consensus 246 -~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 246 -QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 2367899999888777664 457888888854
No 275
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.30 E-value=9.6 Score=48.66 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=42.0
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEE-cCcEEEEEeCCeEEEEeCCC
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT 111 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~-s~rlLaVs~d~~I~IwD~~T 111 (779)
..++++|+|+.+.+.++++.|+.+|.-=+| +.+.|+...+..|+-|++..
T Consensus 84 ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 357899999999999999999888776666 78889888889999999863
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=84.12 E-value=2 Score=50.74 Aligned_cols=75 Identities=9% Similarity=0.024 Sum_probs=48.0
Q ss_pred cCCC-CeEEEEEc-CCCCEEEEEeC-CC---CEEEEEeCCCC-CCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCC
Q 004015 266 AHKS-PISALCFD-PSGILLVTASV-QG---HNINIFKIIPG-ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 338 (779)
Q Consensus 266 aHt~-~IsaLaFS-PdG~lLATaS~-DG---t~I~Vwdi~~~-~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD 338 (779)
+|.. .+...+|| |||++||-+.. .| ..|.|+|+.++ ..- ... +.. ...+++||||
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----------~~~---~~~-----~~~~~~WspD 231 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----------ADK---VSG-----TNGEIVWGPD 231 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------CCC---EEE-----ECSCCEECSS
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------Ccc---ccC-----ceeeEEEecC
Confidence 3443 68899999 99999885544 33 24888998753 100 001 111 1236899999
Q ss_pred CCEEEEEeCCC-----eEEEEecCC
Q 004015 339 SNWIMISSSRG-----TSHLFAINP 358 (779)
Q Consensus 339 g~~LAtgS~DG-----TVhIwdl~~ 358 (779)
|+.|+....|. .|+++++..
T Consensus 232 g~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 232 HTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp TTEEEEEEECTTCCEEEEEEEETTS
T ss_pred CCEEEEEEECCCCCCCEEEEEECCC
Confidence 99999888763 466666644
No 277
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=83.54 E-value=12 Score=40.35 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=59.7
Q ss_pred CCeEEEEECCCC----cEEEEeccCC-CCeEEEEEcCCCCEEEEEeC---C------------CCEEEEEeCCCCCCCCC
Q 004015 247 VGMVIVRDIVSK----NVIAQFRAHK-SPISALCFDPSGILLVTASV---Q------------GHNINIFKIIPGILGTS 306 (779)
Q Consensus 247 dG~V~VwDl~s~----~~v~~f~aHt-~~IsaLaFSPdG~lLATaS~---D------------Gt~I~Vwdi~~~~~g~~ 306 (779)
...|.||++... ..+.++.+.. ...+.++++++|.+++|.+. | .. =+||.+.++
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~-g~vyr~d~~----- 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSPN----- 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC-EEEEEECTT-----
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc-cEEEEEECC-----
Confidence 356777766542 2344554432 46889999999999998652 1 11 244444332
Q ss_pred CccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCC
Q 004015 307 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 361 (779)
Q Consensus 307 s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg 361 (779)
.++. +..+.. .-..|+||||+++|..+. ..++|++|++...+.
T Consensus 212 -------~~~~---~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 212 -------DVRV---VAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255 (355)
T ss_dssp -------CCEE---EEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred -------eEEE---eecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence 1121 112221 246899999998877664 578999999986443
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=82.94 E-value=86 Score=37.42 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=56.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.+.|+........+.........|+++|.+.+|.-++. ....|.+.++.-. .... .+..+.
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-------------~~~~-lv~~~l 557 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIYS-LVTENI 557 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CEEE-EECSSC
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-------------ceEE-EEeCCC
Confidence 357778888765443333344456789999997554544443 2134666665421 1211 111221
Q ss_pred CcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 359 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~ 359 (779)
.....|++++++.+|..+- ..++|.++++.-.
T Consensus 558 --~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 558 --QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --CCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 2367999998877776664 3467888887543
No 279
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=81.94 E-value=5.9 Score=42.75 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=65.9
Q ss_pred CCCeEEEEECC---CCcEEEEec--cCC-----------CCeEEEEEcCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCc
Q 004015 246 NVGMVIVRDIV---SKNVIAQFR--AHK-----------SPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSA 308 (779)
Q Consensus 246 ~dG~V~VwDl~---s~~~v~~f~--aHt-----------~~IsaLaFSPdG~lLATaS~D-Gt~I~Vwdi~~~~~g~~s~ 308 (779)
.+..|..||+. +++.+..+. +.. .....|+.+++|...+|.+.- +. ||.+.+. |.
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~---I~rV~pd--G~--- 169 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA---IARVSAD--GK--- 169 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE---EEEECTT--SC---
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe---EEEEeCC--CC---
Confidence 45678899999 776654433 222 248899999999999998876 54 5665543 11
Q ss_pred cCCCCceeEEEEeec--CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 309 CDAGTSYVHLYRLQR--GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 309 ~~~~~s~~~l~~l~r--G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
. ...+-+.. ..+..-...|+|.|||+.|++....|.+..||+.
T Consensus 170 -----~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 170 -----T-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -----C-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred -----E-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 11122222 1111125689999999999988779999999997
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=81.46 E-value=5.9 Score=43.12 Aligned_cols=101 Identities=11% Similarity=0.218 Sum_probs=64.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC----CCE--EEEEeCC---CCEEEEEeCCCCCCCCCCccCCC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS----GIL--LVTASVQ---GHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd----G~l--LATaS~D---Gt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
+.+...+-+.|||+ +++.++.+.. +.++.+..-|+ |+. ||.++.. .+.|.||++.+. .
T Consensus 44 i~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~--------- 110 (355)
T 3amr_A 44 ITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-N--------- 110 (355)
T ss_dssp EEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-T---------
T ss_pred EEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-C---------
Confidence 44455678999999 7888888864 56677666553 332 4444443 356999988643 0
Q ss_pred CceeEEEEeec-----CCCcccEEEEEE--cCC-CC-EEEEEeCCCeEEEEecCC
Q 004015 313 TSYVHLYRLQR-----GLTNAVIQDISF--SDD-SN-WIMISSSRGTSHLFAINP 358 (779)
Q Consensus 313 ~s~~~l~~l~r-----G~t~a~I~sIaF--SpD-g~-~LAtgS~DGTVhIwdl~~ 358 (779)
..+..+-+ +.....++.+|+ +|+ ++ |+.+...+|.+..|++..
T Consensus 111 ---~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 111 ---GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp ---CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred ---CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 11222211 011134678898 885 44 788888999999999965
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=79.59 E-value=3.4 Score=47.76 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=62.7
Q ss_pred eEEEEECCCCc--EEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 249 MVIVRDIVSKN--VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 249 ~V~VwDl~s~~--~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.+||..+++ .+..+. .+.....++++.++|++++.|+.++..+.+||..+. .|. .+-.+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~-----------~~~~~~--- 284 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWI-----------PGPDMQ--- 284 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT-EEE-----------ECCCCS---
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC-cee-----------ECCCCC---
Confidence 68899998865 333443 333445568899999999999976656899998764 111 111111
Q ss_pred Cccc-EEEEEEcCCCCEEEEEe-CC-----CeEEEEecCCC
Q 004015 326 TNAV-IQDISFSDDSNWIMISS-SR-----GTSHLFAINPL 359 (779)
Q Consensus 326 t~a~-I~sIaFSpDg~~LAtgS-~D-----GTVhIwdl~~~ 359 (779)
..+ -..+++-+|+++++.|+ .+ .++.+||....
T Consensus 285 -~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 285 -VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp -SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred -ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 111 12566778999999998 44 57899998754
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=79.56 E-value=17 Score=37.35 Aligned_cols=101 Identities=7% Similarity=0.179 Sum_probs=67.3
Q ss_pred cCCCCeEEEEECCCCcEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee--EEEE
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV--HLYR 320 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aH-t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~--~l~~ 320 (779)
.+.++.|...|.. ++.+..+.-. ....-.|++.++|.++++.-.+ +.+.++++... +... ....
T Consensus 45 ~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~-~~l~~~~v~~~-----------~~i~~~~~~~ 111 (255)
T 3qqz_A 45 INKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERD-YAIYVISLTPN-----------SEVKILKKIK 111 (255)
T ss_dssp EETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTT-TEEEEEEECTT-----------CCEEEEEEEE
T ss_pred ECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCC-CcEEEEEcCCC-----------Ceeeeeeeec
Confidence 4557889999998 7888877521 2467789999999876654344 45788887653 0111 1222
Q ss_pred eecC--CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 321 LQRG--LTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 321 l~rG--~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+.-+ ..+...-.|||+|+++.|.++..+....||.+.
T Consensus 112 ~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 112 IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 2111 122336899999999888888888777777775
No 283
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=78.94 E-value=68 Score=33.70 Aligned_cols=80 Identities=9% Similarity=-0.086 Sum_probs=45.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..-+.|+|+|++..|.-++.....|..+++... ..+.+. ..+ ......|++. ++..+.+-...
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~------------~~~~~~--~~~--~~~P~giav~-~~~ly~td~~~ 265 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAVI--SQG--LPHPFAITVF-EDSLYWTDWHT 265 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEE--CSS--CSSEEEEEEE-TTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC------------ceEEEE--eCC--CCCceEEEEE-CCEEEEecCCC
Confidence 346789999987777777776666888886532 112221 111 1235678883 44444455556
Q ss_pred CeEEEEecCCCCCceee
Q 004015 349 GTSHLFAINPLGGSVNF 365 (779)
Q Consensus 349 GTVhIwdl~~~gg~~~~ 365 (779)
+.|..++..++.....+
T Consensus 266 ~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 266 KSINSANKFTGKNQEII 282 (349)
T ss_dssp TEEEEEETTTCCSCEEE
T ss_pred CeEEEEEccCCCccEEe
Confidence 77777664444333333
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=78.69 E-value=20 Score=41.94 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=31.8
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE--eCCeEEEEeCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAAT 111 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs--~d~~I~IwD~~T 111 (779)
...|+..++.++++...+.--..+.+|++. ...|.++ ..++|+.+|+.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g 437 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 437 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCC
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCC
Confidence 357888999888776555444456677875 3444443 456888888875
No 285
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=77.70 E-value=29 Score=35.30 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+.|..||.... ....+. -......|+|+++|+++++... ++..|..+|...+ ....+..+..+
T Consensus 51 ~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g------------~~~~~~~~~~~ 116 (306)
T 2p4o_A 51 EVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG------------TVETLLTLPDA 116 (306)
T ss_dssp TTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS------------CEEEEEECTTC
T ss_pred CCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC------------eEEEEEeCCCc
Confidence 4578888887764 333222 2246888999999997776543 2323445565443 23333333111
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.....+++.+++..+++-+.++.|.++|...
T Consensus 117 ---~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 117 ---IFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp ---SCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred ---cccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 1235666677776566555688777777643
No 286
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=77.36 E-value=88 Score=34.13 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=42.3
Q ss_pred CCEEEEEECCCC--cEEEEEeCC-------CCEEEEEEc---------CcEEEEEe--CCeEEEEeCCCCcEEEEE
Q 004015 63 PTVVHFYSLRSQ--SYVHMLKFR-------SPIYSVRCS---------SRVVAICQ--AAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 63 ~~tVrIWDL~Tg--e~V~tLkf~-------s~V~sV~~s---------~rlLaVs~--d~~I~IwD~~T~e~l~tl 118 (779)
+-+|-+|||+|+ +.++++.|+ +-+.+|++. +.++-++. ...|.|||+.+++--+.+
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 357889999999 999999985 346777775 23444543 568999999999876655
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=77.21 E-value=60 Score=36.68 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
..-..|+|+|+|.+|..++...+.|+.++.
T Consensus 310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 345789999999987777877777777654
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=75.26 E-value=1.4e+02 Score=35.52 Aligned_cols=102 Identities=6% Similarity=-0.082 Sum_probs=54.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
+.|.+.++........+...-.....|++++.+..|..++.....|..+++.-. ..+.+..- .+..
T Consensus 537 ~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~------------~~~~v~~~-~~~l- 602 (791)
T 3m0c_C 537 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED-EKRL- 602 (791)
T ss_dssp CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEEC-TTTT-
T ss_pred CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC------------ceEEEecC-CCcc-
Confidence 345555555443333333333567889999887777777776666788886432 11222211 1111
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCCceee
Q 004015 328 AVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~gg~~~~ 365 (779)
.....|++. +.+|..+ ...++|...+...+.....+
T Consensus 603 ~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 603 AHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 124466664 3344444 44566776665554443343
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=74.68 E-value=25 Score=38.39 Aligned_cols=94 Identities=12% Similarity=0.142 Sum_probs=56.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C--C-EEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G--H-NINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-G--t-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+.|+.+|+.++.... +.........|+|+++|++|..++.. + . .+.+++. .+ . ......+..
T Consensus 159 ~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g---~---------~~~~~~l~~ 224 (430)
T 3tc9_A 159 HPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES---G---------FKVITELTK 224 (430)
T ss_dssp EEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG---T---------SCSEEEEEE
T ss_pred CcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC---c---------eeeeeeecc
Confidence 788899998766443 33344567899999999955555542 2 1 2333332 21 0 110011222
Q ss_pred CCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCC
Q 004015 324 GLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 324 G~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
.. ....++++| ++.++++-...+.|..|+...
T Consensus 225 ~~---~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 225 GQ---NCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp CS---SCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CC---CceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 11 246899999 677666666778888888763
No 290
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=74.57 E-value=26 Score=36.01 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=54.2
Q ss_pred EeccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCE
Q 004015 263 QFRAHKSPISALCFDPSGILL-VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 341 (779)
Q Consensus 263 ~f~aHt~~IsaLaFSPdG~lL-ATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~ 341 (779)
.+.+-...++.|+|+|++..| |....++. |...|.. + .+.....+ .|. ...-.|++.+++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~-I~~ld~~-g------------~v~~~i~l-~g~--~D~EGIa~~~~g~~ 83 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAA-IVEMTTN-G------------DLIRTIPL-DFV--KDLETIEYIGDNQF 83 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEE-EEEEETT-C------------CEEEEEEC-SSC--SSEEEEEECSTTEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCe-EEEEeCC-C------------CEEEEEec-CCC--CChHHeEEeCCCEE
Confidence 445555789999999986655 45555554 5555654 3 12222222 232 24678999999987
Q ss_pred EEEEeCCCeEEEEecCCCCC
Q 004015 342 IMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 342 LAtgS~DGTVhIwdl~~~gg 361 (779)
+++.-.++.+.+|++...+.
T Consensus 84 ~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 84 VISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp EEEETTTTEEEEEEECTTCC
T ss_pred EEEECCCCcEEEEEcCCCCe
Confidence 77766778999999987654
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=72.74 E-value=23 Score=38.08 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=63.4
Q ss_pred CCCeEEEEECCCCcEEEE-ecc----CC--CCeEEEEE---cCCCCEEEEEeC-------------CCCEEEEEeCC---
Q 004015 246 NVGMVIVRDIVSKNVIAQ-FRA----HK--SPISALCF---DPSGILLVTASV-------------QGHNINIFKII--- 299 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~-f~a----Ht--~~IsaLaF---SPdG~lLATaS~-------------DGt~I~Vwdi~--- 299 (779)
..|.|..||...+..... +.. .. ..++.|.| +|+|++|+.+.. + ..+..||+.
T Consensus 33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~-~~v~~~Dl~~~~ 111 (334)
T 2p9w_A 33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGA-SSFHSFNLPLSE 111 (334)
T ss_dssp TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSC-CEEEEEESSCCT
T ss_pred cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCC-CEEEEEcCCcCC
Confidence 468899999876543333 332 11 13578999 799999986542 3 347888987
Q ss_pred CCCCCCCCccCCCCceeEEEEeec---------CCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQR---------GLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 361 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~r---------G~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~gg 361 (779)
++ .......|.. |......++|+..++|+.-++++.- +. ||.+.+.|.
T Consensus 112 tg------------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~ 169 (334)
T 2p9w_A 112 NS------------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK 169 (334)
T ss_dssp TC------------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC
T ss_pred CC------------CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC
Confidence 43 1122223310 1011237899999999988888876 55 677777654
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=71.98 E-value=1.1e+02 Score=32.78 Aligned_cols=102 Identities=6% Similarity=-0.091 Sum_probs=54.1
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
.|...++........+...-..-..|+|+|++..|.-++...+.|..+|+... ..+.+... .+.. .
T Consensus 226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~~~-~~~l-~ 291 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED-EKRL-A 291 (400)
T ss_dssp CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------CCEEEEEC-SSTT-S
T ss_pred EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC------------ccEEEEeC-CCCC-C
Confidence 44555554332222222223456889999988888877776666888887532 11222221 1111 1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 329 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
....|++. .+..+.+-...+.|..++..++.....+
T Consensus 292 ~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 292 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 24567773 2334445555677777775544333333
No 293
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.88 E-value=11 Score=43.57 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=39.1
Q ss_pred EEEEEcCCCCEEEEEeCC----------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCE
Q 004015 272 SALCFDPSGILLVTASVQ----------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 341 (779)
Q Consensus 272 saLaFSPdG~lLATaS~D----------Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~ 341 (779)
-.|+|+|+|.|++.-+.+ |.. .+|-..+. ...++.+-++-..+.+..++|+||++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn-~~~~~~~~-------------~g~~~rf~~~P~gaE~TG~~fspDg~t 544 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNN-QMLCADPA-------------TGEIRRFMVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSC-EEEEECTT-------------TCCEEEEEECCTTCEEEEEEECTTSSE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccc-eEEEEeCC-------------CCeEEEEEeCCCCccCcCeeECCCCCE
Confidence 569999999988765543 121 33332221 013455666666678999999999988
Q ss_pred EEEE
Q 004015 342 IMIS 345 (779)
Q Consensus 342 LAtg 345 (779)
|.+.
T Consensus 545 lfvn 548 (592)
T 3zwu_A 545 LFVG 548 (592)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 294
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=68.79 E-value=28 Score=38.54 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC----CcccEEEEEEcCC---CCEE
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL----TNAVIQDISFSDD---SNWI 342 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~----t~a~I~sIaFSpD---g~~L 342 (779)
.-..|+|.|||++|++-. .|..|.+++...+ ....+..+.... ...-+.+|+|+|| +.+|
T Consensus 28 ~P~~~a~~pdG~l~V~e~-~gg~I~~~~~~~g------------~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTER-ATGKILRVNPESG------------SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SEEEEEECTTSCEEEEET-TTCEEEEECTTTC------------CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred CceEEEEcCCCcEEEEEc-CCCEEEEEECCCC------------cEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 456899999999888754 4433566654322 122233332211 1123779999996 6666
Q ss_pred EEEe
Q 004015 343 MISS 346 (779)
Q Consensus 343 AtgS 346 (779)
.++.
T Consensus 95 Yv~~ 98 (454)
T 1cru_A 95 YISG 98 (454)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=67.74 E-value=18 Score=39.59 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=46.0
Q ss_pred eEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE-eCC
Q 004015 271 ISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSR 348 (779)
Q Consensus 271 IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S~D 348 (779)
...++++| +|.++++-...+ .|..|+.... ....+..+..+ ..-..|+|+|||++|..+ ...
T Consensus 228 p~giavdp~~g~lyv~d~~~~-~V~~~~~~~~------------~~~~~~~~~~~---~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAG-QVFRYDFTTQ------------ETTPLFTIQDS---GWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTT-EEEEEETTTT------------EEEEEEECSSS---SCCEEEEECTTSSEEEEEETTT
T ss_pred ceEEEEeCCCCEEEEEECCCC-EEEEEECCCC------------cEEEEEEcCCC---CcceeEEEcCCCCEEEEEECCC
Confidence 45688999 787776654454 4788887643 11122222111 225689999999965544 567
Q ss_pred CeEEEEecCC
Q 004015 349 GTSHLFAINP 358 (779)
Q Consensus 349 GTVhIwdl~~ 358 (779)
+.|++|+...
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 8899988754
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=67.00 E-value=30 Score=36.81 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=48.4
Q ss_pred CCCCeEEEEECCCCcEEEEec---cCCCCeEEEEEcCC----CCEEEEEeC---CC---CEEEEEeCCCCCCCCCCccCC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPS----GILLVTASV---QG---HNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~---aHt~~IsaLaFSPd----G~lLATaS~---DG---t~I~Vwdi~~~~~g~~s~~~~ 311 (779)
+..|.|.++|-...+.+..+. .-......|+|+|+ |.+.++-+. ++ +.|..|+.... ...
T Consensus 46 e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-~~~------ 118 (354)
T 3a9g_A 46 ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-TFK------ 118 (354)
T ss_dssp ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-SCC------
T ss_pred eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-CcC------
Confidence 345888888743222333332 11245788999997 666666543 21 23555554421 000
Q ss_pred CCceeEEEE-eecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 312 GTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 312 ~~s~~~l~~-l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
....+.++. +..+ ..+....|+|.|||.+.++.++
T Consensus 119 ~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 LKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCC
T ss_pred cCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECC
Confidence 001122222 3211 1122457999999986665443
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=66.06 E-value=34 Score=36.17 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=42.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC-CcccEEEEEEcCC---CCEEEEE
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISFSDD---SNWIMIS 345 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~-t~a~I~sIaFSpD---g~~LAtg 345 (779)
.-..|+|+|||+++++ ...|+ |.+++ .+ ....+..+.... .......|+|+|| +.+|.++
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~-I~~i~--~g------------~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGR-IRLFR--EG------------RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTE-EEEEE--TT------------EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCe-EEEEE--CC------------CccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 4568999999997776 45565 77877 33 112222221000 0123789999999 5655554
Q ss_pred eCC------CeEEEEecC
Q 004015 346 SSR------GTSHLFAIN 357 (779)
Q Consensus 346 S~D------GTVhIwdl~ 357 (779)
... +.|..|++.
T Consensus 96 ~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEECTTSSEEEEEEEEEC
T ss_pred EecCCCCCccEEEEEEeC
Confidence 432 456666654
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=65.88 E-value=28 Score=36.87 Aligned_cols=93 Identities=11% Similarity=0.090 Sum_probs=47.2
Q ss_pred CCCCeEEEEECCCCcEEEEec---cCCCCeEEEEEcCC----CCEEEEEeCCC----CEEEEEeCCCCCCCCCCccCCCC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPS----GILLVTASVQG----HNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~---aHt~~IsaLaFSPd----G~lLATaS~DG----t~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
+..|.|.+++-.+.+.+..+. .-......|+|+|+ |.+.++-...+ +.|..|+.... . ..
T Consensus 48 e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~---~------~~ 118 (352)
T 2ism_A 48 ERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE---R------GV 118 (352)
T ss_dssp ETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSS---C------EE
T ss_pred eCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCC---C------cC
Confidence 345889888811112333332 11346788999998 55555544321 33566665421 0 00
Q ss_pred ceeEEEE-eec-CCCcccEEEEEEcCCCCEEEEEe
Q 004015 314 SYVHLYR-LQR-GLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 314 s~~~l~~-l~r-G~t~a~I~sIaFSpDg~~LAtgS 346 (779)
..+.++. +.. ....+....|+|.|||.+.++.+
T Consensus 119 ~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 119 LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 1122332 321 11112245899999997655543
No 299
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=63.32 E-value=47 Score=41.51 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=60.9
Q ss_pred CeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
..|++.+...+..+..++... ..|.+.+.+. .+++.++ .+ .+.+|++..+ ....+.+. .-
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~-~l~~fel~~~------------~L~~~~~~---~l 552 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GR-ALYYLQIHPQ------------ELRQISHT---EM 552 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TT-EEEEEEEETT------------EEEEEEEE---EC
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CC-EEEEEEeeCC------------ceeeeccc---CC
Confidence 356777776666677776433 4677777664 3566665 34 4778887643 12222221 12
Q ss_pred cccEEEEEEcCC------CCEEEEEeC-CCeEEEEecCCC
Q 004015 327 NAVIQDISFSDD------SNWIMISSS-RGTSHLFAINPL 359 (779)
Q Consensus 327 ~a~I~sIaFSpD------g~~LAtgS~-DGTVhIwdl~~~ 359 (779)
...|.|+++.|. ++++|+|.. |++++|+++...
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 346999999864 579999996 999999999753
No 300
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=61.93 E-value=43 Score=39.07 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=58.2
Q ss_pred CeEEEEECCCCcEEEEeccC-----CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 248 GMVIVRDIVSKNVIAQFRAH-----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aH-----t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
+-|.+||..+++........ ...|.+|..+++|++.+.....| +..||.... ...+ +...
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G--l~~~~~~~~------------~~~~-~~~~ 533 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG--VGIYTPDMQ------------LVRK-FNQY 533 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC--EEEECTTCC------------EEEE-ECTT
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC--EEEEeCCCC------------eEEE-ccCC
Confidence 34667787766543322222 36799999999999887655455 667776543 1111 2222
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.+.....|.+|+..++|++.+. +.+|-+..|+...
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARN 568 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTT
T ss_pred CCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCC
Confidence 3333445999999999986544 4467556676643
No 301
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=60.05 E-value=63 Score=34.67 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
..-..|+|.|||++|++--..|+ |++++..
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~-I~~v~~~ 61 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEAT-ITRVDAK 61 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCE-EEEEECC
Confidence 45678999999999888654676 6776643
No 302
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=58.22 E-value=26 Score=38.42 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=44.9
Q ss_pred eEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEeecCCCcccEEEEEEcCCCCEEEEE-eC
Q 004015 271 ISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SS 347 (779)
Q Consensus 271 IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~-~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S~ 347 (779)
...++++| +|.++++-..++ .|..||...+ .. ..+... +.. ..-..|+|+||+++|.++ ..
T Consensus 230 P~giavd~~~G~lyv~d~~~~-~V~~~d~~~g------------~~~~~~~~~--~~~-~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHA-MISSYDPATG------------TLTEEEVMM--DTK-GSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCS-EEEEECTTTC------------CEEEEEEEC--SCC-SSCEEEEECTTSSEEEEEETT
T ss_pred CCEEEEeCCCCeEEEEECCCC-EEEEEECCCC------------eEEEEEecc--CCC-CCcccEEEeCCCCEEEEEeCC
Confidence 45689999 787776654444 4777776543 12 222221 211 123479999999965555 45
Q ss_pred CCeEEEEecCCC
Q 004015 348 RGTSHLFAINPL 359 (779)
Q Consensus 348 DGTVhIwdl~~~ 359 (779)
.+.|+.+++...
T Consensus 294 ~~~I~~~~~d~~ 305 (433)
T 4hw6_A 294 KHCIYRVDYNRE 305 (433)
T ss_dssp TTEEEEEEBCTT
T ss_pred CCEEEEEeCCCC
Confidence 678998887643
No 303
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=57.14 E-value=1.7e+02 Score=29.83 Aligned_cols=82 Identities=7% Similarity=-0.092 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..-..|+|+|++..|..++...+.|..+|+... ..+.+...... ......|++. .+..+.+-...
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~------------~~~~~~~~~~~--~~~P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILEDEKR--LAHPFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEECTTT--TSSEEEEEEE-TTEEEEEETTT
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCC------------ceEEEeecCCc--cCCcEEEEEE-CCEEEEEECCC
Confidence 456789999988777777766666888887532 11222221111 1225678884 34445555566
Q ss_pred CeEEEEecCCCCCceee
Q 004015 349 GTSHLFAINPLGGSVNF 365 (779)
Q Consensus 349 GTVhIwdl~~~gg~~~~ 365 (779)
+.|..++..++.....+
T Consensus 229 ~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CeEEEEeCCCCcceEEE
Confidence 78888876554433344
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=55.28 E-value=46 Score=37.22 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=49.9
Q ss_pred CCCCeEEEEEcCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec-----CCC--cccEEEEEEc
Q 004015 267 HKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR-----GLT--NAVIQDISFS 336 (779)
Q Consensus 267 Ht~~IsaLaFSPd---G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r-----G~t--~a~I~sIaFS 336 (779)
...+|..+.|+|- |..|++=-.|+. |++||+......+ . .|.+ |.. .-.|.++||+
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P------------~-~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKP------------I-VLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCC------------E-EESCCCSEEESCSSCCCEEEEEEC
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCC------------c-chhccccccCCCcccceEEEEEEc
Confidence 3578999999995 457888888887 9999998631001 1 1111 111 1348999999
Q ss_pred CCCCEEEEEeCCCeEEEEecCCC
Q 004015 337 DDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 337 pDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.++--|-+.+....-.||.+.|+
T Consensus 189 ~~~lTLYvl~~t~~GDIYAlcP~ 211 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAFYPF 211 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEESSC
T ss_pred CCCcEEEEEecCCCCCEEEECCC
Confidence 98776666553322346667665
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=52.70 E-value=58 Score=34.52 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee---cCCCcccEEEEEEcCC---CCEE
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDD---SNWI 342 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~---rG~t~a~I~sIaFSpD---g~~L 342 (779)
..-..|+|.|||+++++ ..+|+ |.+++ ..+ . ..+..+. .+ ......|+|+|| +.+|
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~-I~~~d-~~G------------~-~~~~~~~v~~~g--~~g~~gia~~pdf~~~g~l 90 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGR-LVLIS-PSG------------K-KLVASFDVANVG--EAGLLGLALHPEFPKKSWV 90 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTE-EEEEC-SSC------------E-EEEEECCCCCST--TCSEEEEEECTTTTTSCEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCE-EEEEe-CCC------------c-eEeeccceeecC--CCceeeEEeCCCCCcCCEE
Confidence 34578999999997776 44566 67776 222 1 1222221 11 123789999998 5555
Q ss_pred EEEe
Q 004015 343 MISS 346 (779)
Q Consensus 343 AtgS 346 (779)
.++.
T Consensus 91 yv~~ 94 (354)
T 3a9g_A 91 YLYA 94 (354)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 306
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=52.08 E-value=3.3e+02 Score=31.47 Aligned_cols=92 Identities=8% Similarity=0.009 Sum_probs=55.0
Q ss_pred CCeEEEEECCCCcEEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 247 VGMVIVRDIVSKNVIAQF----RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f----~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.+-|.+||..++.. ..+ ......|.+|..+++|.+.+. ..++. +..|+..++ .+..+.
T Consensus 382 ~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWig-t~~~G-l~~~~~~~~---------------~~~~~~ 443 (781)
T 3v9f_A 382 GGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWFG-TYLGN-ISYYNTRLK---------------KFQIIE 443 (781)
T ss_dssp SSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEEE-ETTEE-EEEECSSSC---------------EEEECC
T ss_pred CCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEEE-eccCC-EEEEcCCCC---------------cEEEec
Confidence 34577788765432 222 123357999999999998874 44333 677876543 111121
Q ss_pred c-CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 323 R-GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 323 r-G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
. +.....|.+|+..+++++.+ |+. +-+.+|+...
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~ 478 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLAS 478 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSS
T ss_pred cCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCC
Confidence 1 22334599999999887554 444 4577777654
No 307
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=49.96 E-value=56 Score=37.81 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=38.4
Q ss_pred CeEEEEEcCCCCEEEEEeCC----------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 270 PISALCFDPSGILLVTASVQ----------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~D----------Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
.-..|+|+++|.|.+..+.. |. =.||.+.+. .+. +..+-.+-..+.+..++||||+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gn-n~v~~~dp~----------tGe---l~~fl~~P~~aEpnGiafSPD~ 542 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGN-NQMLCADPA----------TGE---IRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCS-CEEEEECTT----------TCC---EEEEEECCTTCEEEEEEECTTS
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCC-ceEEEEeCC----------CCe---EEEEEeCCCCccccCCEECCCC
Confidence 45679999999988843321 11 145554432 012 2333344334568999999999
Q ss_pred CEEEEE
Q 004015 340 NWIMIS 345 (779)
Q Consensus 340 ~~LAtg 345 (779)
+.|.++
T Consensus 543 ktLfV~ 548 (592)
T 4a9v_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 988776
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=49.62 E-value=2.1e+02 Score=28.42 Aligned_cols=50 Identities=4% Similarity=0.045 Sum_probs=30.6
Q ss_pred CEEEEEECCCCc---EEEEEeCC---CCEEEEEEcCcEEEEEe------CCeEEEEeCCCCc
Q 004015 64 TVVHFYSLRSQS---YVHMLKFR---SPIYSVRCSSRVVAICQ------AAQVHCFDAATLE 113 (779)
Q Consensus 64 ~tVrIWDL~Tge---~V~tLkf~---s~V~sV~~s~rlLaVs~------d~~I~IwD~~T~e 113 (779)
..|.+||+.+.+ ....-..+ .....+.+++++++++. ...+.+||+.+.+
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 678999999887 44432222 22334445666666642 2468888887765
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=49.46 E-value=52 Score=34.75 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=24.9
Q ss_pred CCCCeEEEEECCCCc--EEEEec----cCCCCeEEEEEcCC----CCEEEEEeC
Q 004015 245 DNVGMVIVRDIVSKN--VIAQFR----AHKSPISALCFDPS----GILLVTASV 288 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~--~v~~f~----aHt~~IsaLaFSPd----G~lLATaS~ 288 (779)
+..|.|+++|..... .+..+. ........|+|+|+ |.+.++-+.
T Consensus 36 e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~ 89 (353)
T 2g8s_A 36 LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE 89 (353)
T ss_dssp ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence 345888888854321 122121 11245688999995 766666443
No 310
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=49.08 E-value=34 Score=39.30 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=47.8
Q ss_pred EEEEcC-CCCEEEEEeCCC----------CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCE
Q 004015 273 ALCFDP-SGILLVTASVQG----------HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 341 (779)
Q Consensus 273 aLaFSP-dG~lLATaS~DG----------t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~ 341 (779)
+.++.| +|++++.|+.+. ..+.+||..+. .+. .+..+.... ......+++..|+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-~w~-----------~~~~~~~~~-~~~~~~~~~~~~g~l 256 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-IVS-----------DRTVTVTKH-DMFCPGISMDGNGQI 256 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-CBC-----------CCEEEECSC-CCSSCEEEECTTSCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC-cEE-----------eCcccCCCC-CCccccccCCCCCCE
Confidence 467778 999999987643 14788888765 121 122221111 011235788999999
Q ss_pred EEEEeC-CCeEEEEecCCC
Q 004015 342 IMISSS-RGTSHLFAINPL 359 (779)
Q Consensus 342 LAtgS~-DGTVhIwdl~~~ 359 (779)
+++|+. +.++++||..+.
T Consensus 257 yv~GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 257 VVTGGNDAKKTSLYDSSSD 275 (656)
T ss_dssp EEECSSSTTCEEEEEGGGT
T ss_pred EEeCCCCCCceEEecCcCC
Confidence 999984 568999998653
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=48.21 E-value=2.2e+02 Score=29.22 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=45.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE
Q 004015 266 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 266 aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg 345 (779)
.+...+..++|+|+|++++.+. +|..++-+|-. +. +-..+ ..+ ....+.+++++++++.++ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~g-G~-----------tW~~~---~~~-~~~~~~~~~~~~~g~~~~-~ 221 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPG-QT-----------AWEPH---NRT-TSRRLHNMGFTPDGRLWM-I 221 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTT-CS-----------SCEEE---ECC-SSSCEEEEEECTTSCEEE-E
T ss_pred CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCC-CC-----------ceeEC---CCC-CCCccceeEECCCCCEEE-E
Confidence 4556899999999999887764 56644444420 10 01111 122 223488999999998764 4
Q ss_pred eCCCeEEEEe
Q 004015 346 SSRGTSHLFA 355 (779)
Q Consensus 346 S~DGTVhIwd 355 (779)
+.+|.+++.+
T Consensus 222 ~~~G~~~~s~ 231 (327)
T 2xbg_A 222 VNGGKIAFSD 231 (327)
T ss_dssp ETTTEEEEEE
T ss_pred eCCceEEEec
Confidence 5678776653
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=43.91 E-value=71 Score=34.38 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=32.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
|.|.-+|.. ++ ..+...-.--+.|+|||||+.|..++.....|..|++..
T Consensus 203 g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 203 SFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 555556553 22 122222234577999999998888877666789999864
No 313
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=43.54 E-value=2.4e+02 Score=30.62 Aligned_cols=54 Identities=7% Similarity=0.170 Sum_probs=38.9
Q ss_pred CeEEEEECCCC--cEEEEecc--C----CCCeEEEEEc---CC----CCEEEEEeCCCCEEEEEeCCCC
Q 004015 248 GMVIVRDIVSK--NVIAQFRA--H----KSPISALCFD---PS----GILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 248 G~V~VwDl~s~--~~v~~f~a--H----t~~IsaLaFS---Pd----G~lLATaS~DGt~I~Vwdi~~~ 301 (779)
-+|.+||+.+. ++++.+.= . .+-+..|+++ |+ +.+.-.++..+..|.|+|+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~ 191 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ 191 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC
Confidence 47899999999 88887652 1 3468899999 32 3455555554556899999876
No 314
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=40.26 E-value=3.7e+02 Score=29.19 Aligned_cols=110 Identities=10% Similarity=0.201 Sum_probs=75.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
..+.|+|+.+++.++.+.=. .+|..=+|-.+-++ +--.. +.|.-|++... + .-.+++..+.....
T Consensus 87 ~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L-~lVT~--taVyHWs~~~~---s--------~P~kvFdR~~~L~~ 151 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTV-ALVTD--NAVYHWSMEGE---S--------QPVKMFDRHSSLAG 151 (365)
T ss_dssp TEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEE-EEEES--SEEEEEESSTT---C--------CCEEEEECCGGGTT
T ss_pred CeEEEechHHhhhhcceecC-CccEEEEecCCCeE-EEEcC--CcEEEEcccCC---C--------CCceeeecchhccc
Confidence 57999999999888776543 57888888655543 33222 45899998642 1 12444544444445
Q ss_pred ccEEEEEEcCCCCEEEEEeC-------CCeEEEEecCCCCCceeeccCCCCCC
Q 004015 328 AVIQDISFSDDSNWIMISSS-------RGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~-------DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
..|..-.-++|.+|++..+. .|.+-+|.++.. ....+.+|...+.
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 203 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeE
Confidence 66888888999999887654 377889998764 4556788865554
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=39.03 E-value=1.4e+02 Score=32.92 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=47.6
Q ss_pred CeEEEEECCCCc--EEEEecc------CCCCeEEEEEcC----CCCEEEEEeC------C-----CCEEEEEeCCCCCCC
Q 004015 248 GMVIVRDIVSKN--VIAQFRA------HKSPISALCFDP----SGILLVTASV------Q-----GHNINIFKIIPGILG 304 (779)
Q Consensus 248 G~V~VwDl~s~~--~v~~f~a------Ht~~IsaLaFSP----dG~lLATaS~------D-----Gt~I~Vwdi~~~~~g 304 (779)
+.|++++..++. .+..+.. -...+..|+|+| +|.+.++-+. + .+.|.-|+.... .+
T Consensus 48 g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~-~~ 126 (454)
T 1cru_A 48 GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKS-TD 126 (454)
T ss_dssp CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETT-TT
T ss_pred CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCC-CC
Confidence 467777765443 2333431 234677899999 5666666543 1 122333443221 00
Q ss_pred CCCccCCCCceeEEEE-eecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 305 TSSACDAGTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~-l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
. ....+.+++ +..+ ..+....|+|.|||++.++.++.
T Consensus 127 ~------~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 127 T------LEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp E------EEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEECCT
T ss_pred C------cCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEECCC
Confidence 0 001223333 3222 22347899999999876665543
No 316
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=37.86 E-value=51 Score=38.57 Aligned_cols=96 Identities=18% Similarity=0.081 Sum_probs=53.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCC-CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~D-Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
..+.|.++|+........+.........|+++|++. +++|-... ++ |.++++... ....+ +..
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG~------------~~~~l--~~~ 537 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV------------DIYSL--VTE 537 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSSC------------CCCEE--SCS
T ss_pred cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCCC------------CeeEE--EeC
Confidence 457889999886654443333234457799999654 44443222 33 555554321 01111 111
Q ss_pred CCCcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINP 358 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~ 358 (779)
+. .....|+|+|++++|..+ +..++|.++++..
T Consensus 538 ~l--~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 538 NI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp SC--SSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CC--CCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 11 124579999986655544 4567899888863
No 317
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=36.93 E-value=1.4e+02 Score=33.67 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=40.1
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC-CcccEEEEEE-------cCCCC
Q 004015 270 PISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISF-------SDDSN 340 (779)
Q Consensus 270 ~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~-t~a~I~sIaF-------SpDg~ 340 (779)
.-..|+|+|. +..|..+...++.|+++|+... .+..+.. .+. .......|+| +++++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~------------~v~~l~~--~~~~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR------------MLSSPLN--INTIPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT------------EEEEEEC--CTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC------------EEEEEEc--cCccccCCCcEEEEeecccccCCCCC
Confidence 4567999993 4444444444455788887764 1222221 221 1123789999 99999
Q ss_pred EEEEEeCCC
Q 004015 341 WIMISSSRG 349 (779)
Q Consensus 341 ~LAtgS~DG 349 (779)
+|.++...+
T Consensus 206 ~lyvad~~~ 214 (496)
T 3kya_A 206 YMIVAIDYD 214 (496)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 777776654
No 318
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=36.08 E-value=3.2e+02 Score=30.20 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=54.4
Q ss_pred cCCCCeEEEEECCCC---cEEEEec---c------CCCCeEEEEEcCC----CCEEEEEeCCC-----------CEEEEE
Q 004015 244 ADNVGMVIVRDIVSK---NVIAQFR---A------HKSPISALCFDPS----GILLVTASVQG-----------HNINIF 296 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~---~~v~~f~---a------Ht~~IsaLaFSPd----G~lLATaS~DG-----------t~I~Vw 296 (779)
+...|.|++++.... ..+..+. + -..-...|+|+|+ |.+.++-+.+. +.|.-|
T Consensus 32 ~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~ 111 (463)
T 2wg3_C 32 LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEY 111 (463)
T ss_dssp EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEE
T ss_pred EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEE
Confidence 345688998875432 2333332 1 1346788999997 77776654321 123335
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.+....... .+ ..+.+.++++......+....|+|.|||++.++.++.+
T Consensus 112 ~~~~~~~~~---~d-~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 112 TVSRKNPHQ---VD-LRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EBCTTCTTS---BC-GGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EEcCCCCCc---cC-CCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 543210000 00 01234455554322334478999999998766666544
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=34.21 E-value=2.5e+02 Score=30.00 Aligned_cols=97 Identities=8% Similarity=0.075 Sum_probs=49.5
Q ss_pred CCCeEEEEECCCCcE--EEEec----cCCCCeEEEEEcCC----CCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 246 NVGMVIVRDIVSKNV--IAQFR----AHKSPISALCFDPS----GILLVTASV-QGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~--v~~f~----aHt~~IsaLaFSPd----G~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
..|.|++++..+++. +..+. .-......|+|+|| |.+.++-+. ..+.|--|......... .....
T Consensus 51 ~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~----~~~~~ 126 (347)
T 3das_A 51 DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSG----EQLGA 126 (347)
T ss_dssp TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTT----CCBCC
T ss_pred cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCccc----ccCCC
Confidence 378898888765542 33332 22456789999995 777665332 22223333333210000 00012
Q ss_pred eeEEEE-eecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 315 YVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 315 ~~~l~~-l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
.+.+++ +..+ ..+.-..|+|.|||.+.++.++
T Consensus 127 ~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 127 PDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp CEEEEEEECCC-SSCCCCCEEECTTSCEEEECBC
T ss_pred cEEEEEcCCCC-CCccCccccCCCCCCEEEEECC
Confidence 233333 3222 2233567999999987666544
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=33.57 E-value=3.7e+02 Score=26.66 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCEEEEEECCCCcEEEEEeCCC---CEEEEEEcCcEEEEE-eC------CeEEEEeCCCCc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRS---PIYSVRCSSRVVAIC-QA------AQVHCFDAATLE 113 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s---~V~sV~~s~rlLaVs-~d------~~I~IwD~~T~e 113 (779)
...+.+||+.+++....-..+. ....+.+++++++++ .+ ..+.+||..+.+
T Consensus 69 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred cceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 3679999999987655433332 233444566666663 22 358888888765
No 321
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=33.55 E-value=46 Score=34.09 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=39.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.+.+|+|+|+|.+.|. .+|. ||.+.+....+. .+..+..++-. .|-+. ...+.|.|+|.+.|+ .||
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~---Ly~~~~~t~~~~---~W~~s~t~IG~--~Gw~~--F~a~~fD~~G~LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK---IYKGTPPTHDND---NWMGRAKKIGN--GGWNQ--FQFLFFDPNGYLYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE---EEEESCCCSTTC---CHHHHCEEEEC--SCGGG--CSEEEECTTSCEEEE--ETT
T ss_pred cceeEEECCCccEEEE--eCCe---EEEECCCCCCcc---cccccccEecc--ccccc--ceEEEECCCCCEEEe--CCC
Confidence 4558999999998888 4553 566554210110 00011122111 12111 368999999998888 558
Q ss_pred eEEEE
Q 004015 350 TSHLF 354 (779)
Q Consensus 350 TVhIw 354 (779)
.|+-+
T Consensus 108 ~iyr~ 112 (236)
T 1tl2_A 108 KLYKA 112 (236)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65533
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.23 E-value=93 Score=37.86 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 329 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
.|.+++..+|..++.+-+.|+++|||++.+.....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 378899999999999999999999999998755444
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=32.99 E-value=3.7e+02 Score=26.55 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=31.0
Q ss_pred CEEEEEECCCCcEEEEEeCC---CCEEEEEEcCcEEEEE-eC-----CeEEEEeCCCCc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR---SPIYSVRCSSRVVAIC-QA-----AQVHCFDAATLE 113 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~---s~V~sV~~s~rlLaVs-~d-----~~I~IwD~~T~e 113 (779)
..+.+||+.+.+....-..+ .....+.+++++++++ .+ ..+.+||+.+.+
T Consensus 77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred cceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 66899999998754432332 2234445567776664 22 357888887765
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=30.72 E-value=4.2e+02 Score=26.43 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=29.6
Q ss_pred CEEEEEECCCCcEEEEEeCC---CCEEEEEEcCcEEEEEe------CCeEEEEeCCCCc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR---SPIYSVRCSSRVVAICQ------AAQVHCFDAATLE 113 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~---s~V~sV~~s~rlLaVs~------d~~I~IwD~~T~e 113 (779)
..+.+||+.+.+....-..+ .....+.+++++++++. -..+.+||+.+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 56889999988754432222 22334445666666632 2467788877654
No 325
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.27 E-value=65 Score=39.94 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 330 IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 330 I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
|.+++..+|..++.+-+.|++++||++.++....+
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 66788889999999999999999999998755444
No 326
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=28.24 E-value=1.8e+02 Score=29.88 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
.+..|.+.+++++++.+. +|. ||....+ |. + ... +..+. ...+.+++|++++++++++..
T Consensus 123 ~~~~i~~~~~~~~~~~~~-~g~---v~~S~Dg--G~--------t-W~~--~~~~~-~~~~~~~~~~~~~~~~~~g~~ 182 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITN-VGA---IYRTKDS--GK--------N-WQA--LVQEA-IGVMRNLNRSPSGEYVAVSSR 182 (327)
T ss_dssp CEEEEEEEETTEEEEEET-TCC---EEEESST--TS--------S-EEE--EECSC-CCCEEEEEECTTSCEEEEETT
T ss_pred CeEEEEEECCCCEEEEeC-Ccc---EEEEcCC--CC--------C-CEE--eecCC-CcceEEEEEcCCCcEEEEECC
Confidence 356677777888777654 554 3333321 00 1 111 11222 234889999999998877643
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.47 E-value=1.5e+02 Score=36.13 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
.|.+++..++..+|.|-+.|++ +|||++.++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~ 267 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTN 267 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCE-EEEEETTTT
T ss_pred eEEEEeecCCCcEEEEEECCCE-EEEEECCCC
Confidence 5777888889999999999976 899999886
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.09 E-value=6.3e+02 Score=28.45 Aligned_cols=111 Identities=10% Similarity=0.189 Sum_probs=74.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
..++.|+|+.++..++.+.=. .+|..=+|=.+-+ |+--.. +.|.-|++... + .-.+++..+....
T Consensus 85 g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~-l~lVT~--taVyHWsi~~~---s--------~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVTD--NAVYHWSMEGE---S--------QPVKMFDRHSSLA 149 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTE-EEEECS--SEEEEEESSSS---C--------CCEEEEECCGGGT
T ss_pred CCeEEEEchHHhhhhcceecC-CCceEEEecCCCe-EEEEcC--CeeEEecccCC---C--------Cchhheecchhcc
Confidence 358999999999888776543 3677777744443 333332 45899998642 1 1244454443444
Q ss_pred cccEEEEEEcCCCCEEEEEeC-------CCeEEEEecCCCCCceeeccCCCCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSS-------RGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~-------DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
...|..-.-++|.+|++..+. .|.+-+|.++.. ....+.+|...+.
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence 566888888999999885553 478889999764 5567788876655
No 329
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=26.70 E-value=6.7e+02 Score=28.53 Aligned_cols=112 Identities=12% Similarity=-0.051 Sum_probs=0.0
Q ss_pred CCCeEEEEECCCCc-EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 246 NVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~-~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
....|++.|+.... ....+........+|+|++.+..|.-++.....|..+++... ......+..+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~-------------~~~~~v~~~~ 82 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT-------------ESVQNVVVSG 82 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEECSS
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC-------------CceEEEEeCC
Q ss_pred CCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 325 LTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 325 ~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
... ...||+.+ .+++..+-...+.|.+.++......+.+...-..+
T Consensus 83 ~~~--P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P 129 (619)
T 3s94_A 83 LLS--PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP 129 (619)
T ss_dssp CSC--EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred CCC--cCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCC
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=26.34 E-value=1.2e+02 Score=30.99 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=38.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeE
Q 004015 272 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 351 (779)
Q Consensus 272 saLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTV 351 (779)
.++.|+|+|.+.|+ .||+ |+.+.+...+. ..+......+- .+|- ..+..|.|.|||.+.|+. |+.+
T Consensus 91 ~a~~fD~~G~LYav--~dG~---iyr~~pP~~~~---~~Wl~~a~~vg--~~gw--~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDK---LYKASPPQSDT---DNWIARATEVG--SGGW--SGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp SEEEECTTSCEEEE--ETTE---EEEESCCCSTT---CCHHHHSEEEE--CSSG--GGEEEEEECTTSCEEEEE--TTEE
T ss_pred eEEEECCCCCEEEe--CCCE---EEEeCCCcCCC---CceeccccEec--cCCC--CceEEEEECCCceEEEEe--CCcE
Confidence 57899999999998 4575 33333311111 01101111111 1221 237899999999998888 7763
No 331
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=25.75 E-value=2.5e+02 Score=29.38 Aligned_cols=83 Identities=12% Similarity=0.277 Sum_probs=45.5
Q ss_pred EEEEeccCCCCeEEEEEcC-------CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEE
Q 004015 260 VIAQFRAHKSPISALCFDP-------SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 332 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSP-------dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~s 332 (779)
++..+..| ...+.++|.. +|+++++. ..+..|..+++..+ .......+..+ ....+.+
T Consensus 263 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~-~~~~~v~~~~~~~~------------~~~~~~~~~~~-~~~rp~~ 327 (353)
T 2g8s_A 263 PVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGA-LKDKDVIVMSVNGD------------KVTEDGRILTD-RGQRIRD 327 (353)
T ss_dssp CSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEE-TTTTEEEEEEEETT------------EEEEEEEESGG-GCCCEEE
T ss_pred CeEEeCCC-cCcceeEEECCccCcccCCcEEEEE-ccCCEEEEEEeCCC------------eEeeeEEcccC-CCCceeE
Confidence 34455544 4678889975 57766654 44454555555432 11111222111 1235889
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 333 ISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 333 IaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
|++.|||...++ +++..=+||.|.+
T Consensus 328 v~~~pdG~lyv~-td~~~g~I~ri~~ 352 (353)
T 2g8s_A 328 VRTGPDGYLYVL-TDESSGELLKVSP 352 (353)
T ss_dssp EEECTTSCEEEE-ECSTTEEEEEEEC
T ss_pred EEECCCCcEEEE-EeCCCCEEEEEeC
Confidence 999999985544 3334446777643
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=24.09 E-value=1.6e+02 Score=34.19 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=59.6
Q ss_pred eEEEEECCC----C-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC--CCCCccCCCCceeEEEEe
Q 004015 249 MVIVRDIVS----K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 249 ~V~VwDl~s----~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~--g~~s~~~~~~s~~~l~~l 321 (779)
.|.|.|.+. + ..+..+..-. .--.+.++|||++++.++.-...+.|+|+..-.. ..- ..++.... .-..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pk-sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k-~~~~~~~~--~ae~ 374 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPK-NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK-LADPRDVI--VGEP 374 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC-CSCGGGGE--EECC
T ss_pred CeeEEccccccccCCceEEEEeCCC-CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc-ccCcccce--Eeec
Confidence 467777765 2 2333333222 2234789999999999888666699999874200 000 00000011 1222
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.-|.. -.-.+|.++|.-..+--.|..|--|++..
T Consensus 375 e~GlG---PlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 375 ELGLG---PLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp BCCSC---EEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cCCCc---ccEEEECCCCceEeeeeecceEEEEeccH
Confidence 23432 46789999994344444899999999964
No 333
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=24.05 E-value=7.1e+02 Score=28.41 Aligned_cols=104 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..+.|..+++........+..-......|++++.+..|.-++.....|.+.++... ....-+..+.
T Consensus 57 ~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~--------------~~~~l~~~~l 122 (628)
T 4a0p_A 57 SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ--------------HRQVLVWKDL 122 (628)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST--------------TCEEEECSSC
T ss_pred CCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC--------------cEEEEEeCCC
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.. ..+|++.|...+|..+.....-+||.+...|.....
T Consensus 123 ~~--P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 123 DS--PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp CC--EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CC--cccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
No 334
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=23.41 E-value=5.3e+02 Score=25.26 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=29.6
Q ss_pred CEEEEEECCCCcEEEEEeCCC---CEEEEEEcCcEEEEEe-C-----CeEEEEeCCCCc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCSSRVVAICQ-A-----AQVHCFDAATLE 113 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s---~V~sV~~s~rlLaVs~-d-----~~I~IwD~~T~e 113 (779)
..+.+||+.+++....-..+. ....+.+++++++++. + ..+++||+.+.+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 568999999987544322322 2333444566666532 1 367888887655
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=21.34 E-value=4.2e+02 Score=26.40 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=30.7
Q ss_pred CeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCC----EEEEEeCCCC
Q 004015 248 GMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQGH----NINIFKIIPG 301 (779)
Q Consensus 248 G~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt----~I~Vwdi~~~ 301 (779)
..+.+||+.+.+- +..+......-.++.+ ++++++.|+.++. .+.+||+.+.
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 5788999987642 2223222222223333 7888888877653 4677887654
No 336
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.11 E-value=75 Score=37.70 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=0.0
Q ss_pred EEEEecCCCCcCCccccCCCcccccCCCCCcCCCCCCCcCCCEEEEEECCCCcEEEEEeC
Q 004015 23 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF 82 (779)
Q Consensus 23 LLav~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~tVrIWDL~Tge~V~tLkf 82 (779)
|+++|-+ +++|+||+++++++.+...
T Consensus 234 LftL~~D----------------------------------h~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 234 LIVLTQN----------------------------------CHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEETT----------------------------------CEEEEEETTTTEEEEEEET
T ss_pred EEEEEcC----------------------------------CeEEEEEcCCCceEEeecc
Done!