Query 004016
Match_columns 779
No_of_seqs 285 out of 1965
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 16:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 6E-152 1E-156 1356.0 84.0 735 26-774 18-797 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-126 6E-131 1118.1 55.3 730 33-774 11-767 (769)
3 PRK03562 glutathione-regulated 100.0 9.5E-47 2.1E-51 440.7 46.8 412 51-492 5-421 (621)
4 PRK10669 putative cation:proto 100.0 9.5E-47 2.1E-51 439.1 45.0 378 52-451 7-391 (558)
5 PRK03659 glutathione-regulated 100.0 8.4E-46 1.8E-50 432.1 46.8 411 52-491 6-420 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 3.7E-45 8E-50 405.6 43.5 381 50-451 5-387 (397)
7 PRK05326 potassium/proton anti 100.0 6.9E-40 1.5E-44 381.3 38.2 384 49-450 4-389 (562)
8 TIGR00932 2a37 transporter, mo 100.0 1.1E-35 2.5E-40 316.2 32.2 271 61-353 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.8E-39 3.9E-44 362.0 -3.7 372 59-449 4-379 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 1.8E-32 4E-37 275.6 31.1 379 47-449 3-388 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 2.7E-26 5.8E-31 264.7 40.2 354 52-420 14-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1.6E-26 3.4E-31 266.0 37.7 367 58-448 5-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 8.2E-23 1.8E-27 228.9 38.9 380 51-449 6-407 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 1E-22 2.2E-27 215.0 28.5 371 48-440 4-377 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 2.1E-21 4.6E-26 223.4 34.0 365 69-449 28-417 (559)
16 PRK14853 nhaA pH-dependent sod 99.7 3.6E-15 7.8E-20 163.2 32.9 299 113-448 64-395 (423)
17 KOG4505 Na+/H+ antiporter [Ino 99.7 9.3E-15 2E-19 150.1 25.7 359 45-417 8-383 (467)
18 KOG1965 Sodium/hydrogen exchan 99.7 6.9E-15 1.5E-19 163.4 22.3 381 57-449 41-455 (575)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 7.3E-12 1.6E-16 134.9 26.5 269 113-417 54-344 (373)
20 PRK11175 universal stress prot 99.4 2.9E-12 6.3E-17 138.6 16.8 270 472-771 5-300 (305)
21 PRK14856 nhaA pH-dependent sod 99.2 3.1E-08 6.7E-13 108.7 29.7 296 112-445 69-428 (438)
22 PRK09560 nhaA pH-dependent sod 99.1 2.6E-08 5.6E-13 107.7 26.4 269 113-417 61-353 (389)
23 cd01988 Na_H_Antiporter_C The 99.1 5.1E-10 1.1E-14 104.9 10.9 128 472-613 1-131 (132)
24 PRK09561 nhaA pH-dependent sod 99.1 4.7E-08 1E-12 105.5 25.1 269 113-417 61-351 (388)
25 PRK14854 nhaA pH-dependent sod 99.0 7.8E-08 1.7E-12 103.5 25.8 270 113-418 58-349 (383)
26 PRK14855 nhaA pH-dependent sod 99.0 8.7E-08 1.9E-12 104.8 26.1 291 113-444 65-410 (423)
27 KOG1966 Sodium/hydrogen exchan 98.9 8.6E-10 1.9E-14 122.5 4.6 361 63-448 54-448 (670)
28 PF06965 Na_H_antiport_1: Na+/ 98.9 1.8E-08 4E-13 108.7 13.8 287 112-434 56-368 (378)
29 COG3004 NhaA Na+/H+ antiporter 98.8 5.4E-07 1.2E-11 93.5 22.3 262 121-418 72-355 (390)
30 cd01987 USP_OKCHK USP domain i 98.4 2.3E-06 4.9E-11 79.4 9.7 119 472-613 1-123 (124)
31 cd01988 Na_H_Antiporter_C The 98.3 1.2E-05 2.6E-10 75.1 12.5 127 629-770 1-132 (132)
32 PRK09982 universal stress prot 98.2 1E-05 2.3E-10 77.2 9.7 132 472-613 5-137 (142)
33 cd01989 STK_N The N-terminal d 98.1 2.5E-05 5.3E-10 74.7 12.1 128 629-771 1-145 (146)
34 PRK15118 universal stress glob 98.1 1.4E-05 3.1E-10 76.3 9.4 133 472-613 5-137 (144)
35 PRK15456 universal stress prot 98.1 1.7E-05 3.7E-10 75.6 9.9 133 472-613 4-141 (142)
36 PF00582 Usp: Universal stress 98.1 3.2E-06 6.9E-11 78.8 3.9 130 472-613 4-139 (140)
37 PRK15005 universal stress prot 98.1 1.7E-05 3.7E-10 75.6 9.0 135 472-613 4-143 (144)
38 cd01989 STK_N The N-terminal d 98.0 2.9E-05 6.2E-10 74.2 10.3 136 472-613 1-143 (146)
39 PF00582 Usp: Universal stress 98.0 2.5E-05 5.4E-10 72.7 9.4 127 629-770 4-140 (140)
40 PRK15005 universal stress prot 97.9 8.6E-05 1.9E-09 70.7 11.2 126 629-770 4-144 (144)
41 cd00293 USP_Like Usp: Universa 97.9 5.6E-05 1.2E-09 69.5 8.3 126 472-612 1-129 (130)
42 PRK12460 2-keto-3-deoxyglucona 97.8 0.0027 5.9E-08 67.4 21.4 254 120-451 51-307 (312)
43 PRK09982 universal stress prot 97.8 6.2E-05 1.3E-09 71.9 8.3 122 629-770 5-138 (142)
44 cd00293 USP_Like Usp: Universa 97.8 0.00029 6.3E-09 64.7 12.3 126 629-769 1-130 (130)
45 cd01987 USP_OKCHK USP domain i 97.8 0.00022 4.7E-09 66.0 11.2 121 629-769 1-123 (124)
46 PRK10116 universal stress prot 97.7 0.00014 3E-09 69.1 9.0 123 629-770 5-138 (142)
47 PRK15118 universal stress glob 97.7 0.00018 3.8E-09 68.6 9.1 124 629-772 5-140 (144)
48 PRK10116 universal stress prot 97.7 0.00022 4.7E-09 67.8 9.7 134 471-614 4-138 (142)
49 PF05684 DUF819: Protein of un 97.6 0.13 2.9E-06 57.2 31.8 301 74-418 24-347 (378)
50 PRK15456 universal stress prot 97.6 0.0005 1.1E-08 65.4 11.1 124 629-770 4-142 (142)
51 PRK11175 universal stress prot 97.5 0.00033 7.1E-09 75.7 9.1 141 471-618 153-303 (305)
52 PF03812 KdgT: 2-keto-3-deoxyg 97.5 0.024 5.1E-07 60.1 21.8 170 120-359 51-221 (314)
53 TIGR00698 conserved hypothetic 97.4 0.18 3.9E-06 55.0 29.0 85 70-162 26-110 (335)
54 COG0385 Predicted Na+-dependen 97.3 0.14 3.1E-06 54.9 26.1 147 112-275 36-191 (319)
55 COG0798 ACR3 Arsenite efflux p 97.2 0.19 4E-06 53.9 25.1 181 76-275 18-202 (342)
56 COG0786 GltS Na+/glutamate sym 97.2 0.046 1E-06 59.5 20.6 126 289-414 227-360 (404)
57 PF03616 Glt_symporter: Sodium 97.1 0.26 5.7E-06 54.7 26.5 96 305-401 247-344 (368)
58 PF03601 Cons_hypoth698: Conse 96.8 0.23 4.9E-06 53.6 21.8 86 71-166 22-109 (305)
59 COG3180 AbrB Putative ammonia 96.7 1.3 2.9E-05 48.1 27.4 299 52-417 7-318 (352)
60 PF13593 DUF4137: SBF-like CPA 96.6 1.3 2.8E-05 48.2 26.4 149 113-274 30-187 (313)
61 TIGR00832 acr3 arsenical-resis 96.5 0.75 1.6E-05 50.3 23.7 102 117-230 46-152 (328)
62 TIGR00793 kdgT 2-keto-3-deoxyg 96.5 0.15 3.1E-06 53.9 17.0 89 120-209 51-140 (314)
63 TIGR00210 gltS sodium--glutama 96.4 1.8 3.9E-05 48.6 26.6 94 304-399 244-340 (398)
64 PRK12652 putative monovalent c 96.4 0.022 4.8E-07 62.6 11.3 122 629-760 7-144 (357)
65 COG0589 UspA Universal stress 96.3 0.055 1.2E-06 51.2 12.1 138 471-613 6-150 (154)
66 TIGR00932 2a37 transporter, mo 96.1 0.2 4.3E-06 53.3 16.2 128 292-424 3-132 (273)
67 PRK03562 glutathione-regulated 96.0 0.18 4E-06 60.1 17.3 132 286-422 10-142 (621)
68 PF03390 2HCT: 2-hydroxycarbox 96.0 3.3 7.2E-05 46.2 25.0 257 129-422 109-394 (414)
69 COG3493 CitS Na+/citrate sympo 95.9 1.8 3.8E-05 47.1 21.6 85 336-422 325-413 (438)
70 PF03601 Cons_hypoth698: Conse 95.9 0.22 4.7E-06 53.8 15.2 164 289-454 6-176 (305)
71 PRK10669 putative cation:proto 95.7 0.36 7.7E-06 57.0 17.4 132 288-424 13-145 (558)
72 PRK05274 2-keto-3-deoxyglucona 95.6 0.36 7.8E-06 52.5 15.7 45 122-166 55-99 (326)
73 COG0589 UspA Universal stress 95.5 0.17 3.7E-06 47.8 11.5 130 629-772 7-153 (154)
74 PF06826 Asp-Al_Ex: Predicted 95.4 0.4 8.7E-06 47.1 13.9 113 71-200 19-136 (169)
75 PRK05326 potassium/proton anti 95.3 0.27 5.9E-06 58.0 14.9 119 288-407 13-133 (562)
76 COG0475 KefB Kef-type K+ trans 95.3 0.6 1.3E-05 52.5 16.9 144 285-435 10-159 (397)
77 PRK03659 glutathione-regulated 95.3 0.7 1.5E-05 55.0 18.2 107 65-189 227-333 (601)
78 PF03956 DUF340: Membrane prot 95.2 0.23 5E-06 49.8 11.6 128 79-230 2-134 (191)
79 PF05145 AmoA: Putative ammoni 95.1 3.9 8.4E-05 44.6 22.0 155 286-449 157-315 (318)
80 COG2855 Predicted membrane pro 94.9 0.23 4.9E-06 53.5 11.3 116 298-415 30-145 (334)
81 PRK03818 putative transporter; 94.9 0.65 1.4E-05 54.5 16.2 125 57-201 12-143 (552)
82 PF01758 SBF: Sodium Bile acid 94.7 1.8 4E-05 43.2 16.9 102 118-230 2-107 (187)
83 TIGR00841 bass bile acid trans 94.6 7.6 0.00016 41.6 26.9 143 117-274 11-163 (286)
84 TIGR00783 ccs citrate carrier 94.5 2.6 5.7E-05 46.0 18.1 118 304-422 203-327 (347)
85 PRK12652 putative monovalent c 94.4 0.3 6.6E-06 53.8 11.2 127 471-609 6-145 (357)
86 TIGR00698 conserved hypothetic 94.2 1.2 2.7E-05 48.6 15.0 114 303-418 29-145 (335)
87 PRK04972 putative transporter; 93.5 0.52 1.1E-05 55.4 11.6 120 56-200 17-141 (558)
88 TIGR03802 Asp_Ala_antiprt aspa 93.1 0.78 1.7E-05 54.0 12.2 91 59-165 18-112 (562)
89 TIGR03802 Asp_Ala_antiprt aspa 92.9 0.91 2E-05 53.4 12.4 116 72-202 412-532 (562)
90 PRK10490 sensor protein KdpD; 92.8 0.59 1.3E-05 58.3 11.2 124 468-614 248-373 (895)
91 TIGR01625 YidE_YbjL_dupl AspT/ 92.6 0.61 1.3E-05 45.1 8.6 115 74-202 20-139 (154)
92 TIGR00844 c_cpa1 na(+)/h(+) an 92.5 2.4 5.1E-05 51.2 15.0 71 336-407 74-146 (810)
93 TIGR00831 a_cpa1 Na+/H+ antipo 92.5 1.4 3.1E-05 51.4 13.3 117 289-409 6-124 (525)
94 PLN03159 cation/H(+) antiporte 92.1 4.2 9.1E-05 50.3 17.1 44 466-510 626-669 (832)
95 TIGR03082 Gneg_AbrB_dup membra 91.0 5.9 0.00013 38.4 13.6 119 290-415 4-126 (156)
96 COG2855 Predicted membrane pro 90.9 27 0.00059 37.9 24.4 103 69-188 31-133 (334)
97 TIGR03082 Gneg_AbrB_dup membra 89.9 4.2 9E-05 39.4 11.5 96 59-168 3-100 (156)
98 COG1346 LrgB Putative effector 89.6 22 0.00048 36.4 16.4 111 325-447 61-171 (230)
99 TIGR00210 gltS sodium--glutama 88.0 20 0.00044 40.2 16.7 166 54-229 222-392 (398)
100 PRK12460 2-keto-3-deoxyglucona 87.3 8 0.00017 41.6 12.3 75 78-165 169-243 (312)
101 PRK10490 sensor protein KdpD; 86.8 2.7 5.9E-05 52.5 9.9 119 627-769 251-372 (895)
102 PF03977 OAD_beta: Na+-transpo 86.2 3.7 8.1E-05 44.1 9.0 113 336-453 67-179 (360)
103 PRK04972 putative transporter; 85.9 6.2 0.00013 46.5 11.8 116 73-202 408-527 (558)
104 PRK04288 antiholin-like protei 85.2 49 0.0011 34.2 16.3 109 327-447 66-174 (232)
105 TIGR03136 malonate_biotin Na+- 84.0 22 0.00047 38.9 13.5 115 335-453 102-216 (399)
106 COG2985 Predicted permease [Ge 83.9 7.4 0.00016 43.9 10.3 78 117-203 62-146 (544)
107 TIGR00808 malonate_madM malona 83.7 11 0.00024 37.6 10.3 110 53-169 18-134 (254)
108 COG2205 KdpD Osmosensitive K+ 83.6 5.2 0.00011 48.0 9.5 123 468-613 246-372 (890)
109 TIGR00946 2a69 he Auxin Efflux 81.9 36 0.00079 37.0 15.0 134 73-229 180-315 (321)
110 PRK03818 putative transporter; 81.8 29 0.00062 41.0 14.9 107 78-198 403-514 (552)
111 COG0025 NhaP NhaP-type Na+/H+ 80.8 28 0.00061 39.6 14.1 74 338-412 64-139 (429)
112 PF03956 DUF340: Membrane prot 79.8 3.8 8.3E-05 41.1 5.9 49 365-413 58-106 (191)
113 PRK03359 putative electron tra 78.3 5 0.00011 42.2 6.5 107 637-754 35-149 (256)
114 PF05145 AmoA: Putative ammoni 78.2 44 0.00095 36.4 14.0 100 54-167 155-256 (318)
115 PRK12342 hypothetical protein; 78.1 5.7 0.00012 41.8 6.8 94 637-742 34-137 (254)
116 COG3329 Predicted permease [Ge 77.9 61 0.0013 34.6 13.9 124 306-431 17-140 (372)
117 PF03616 Glt_symporter: Sodium 77.3 28 0.00061 38.8 12.4 97 55-158 225-323 (368)
118 COG3263 NhaP-type Na+/H+ and K 76.0 26 0.00057 39.2 11.2 110 298-408 24-135 (574)
119 PF00999 Na_H_Exchanger: Sodiu 75.9 0.93 2E-05 50.5 0.3 112 291-405 6-123 (380)
120 PRK10711 hypothetical protein; 75.9 1E+02 0.0022 31.9 14.9 83 361-447 87-169 (231)
121 PF03547 Mem_trans: Membrane t 74.9 20 0.00043 40.0 10.6 133 310-449 11-146 (385)
122 COG2205 KdpD Osmosensitive K+ 72.5 19 0.00042 43.4 9.8 114 627-759 249-364 (890)
123 TIGR02432 lysidine_TilS_N tRNA 70.9 26 0.00056 34.7 9.3 37 629-665 1-37 (189)
124 TIGR00659 conserved hypothetic 70.7 1.3E+02 0.0029 30.9 15.9 83 361-447 86-168 (226)
125 KOG2310 DNA repair exonuclease 69.6 7.5 0.00016 44.3 5.4 72 568-640 41-131 (646)
126 PF01012 ETF: Electron transfe 69.6 15 0.00032 35.7 7.0 82 638-730 15-101 (164)
127 PRK05253 sulfate adenylyltrans 68.7 20 0.00044 38.7 8.4 37 629-665 29-65 (301)
128 TIGR00783 ccs citrate carrier 67.2 70 0.0015 35.2 12.0 94 67-167 195-292 (347)
129 PRK09903 putative transporter 65.3 1.8E+02 0.0039 31.4 15.2 108 73-200 171-279 (314)
130 KOG1288 Amino acid transporter 65.1 3.1E+02 0.0067 33.0 18.2 97 471-589 561-662 (945)
131 PF04172 LrgB: LrgB-like famil 64.5 1.7E+02 0.0037 29.9 13.6 83 361-447 76-158 (215)
132 TIGR02039 CysD sulfate adenyly 64.4 24 0.00051 38.0 7.8 37 629-665 21-57 (294)
133 COG2431 Predicted membrane pro 64.3 29 0.00063 36.5 8.0 77 77-166 108-188 (297)
134 cd01984 AANH_like Adenine nucl 64.0 18 0.0004 30.6 5.7 34 630-664 1-34 (86)
135 COG1346 LrgB Putative effector 63.5 1.9E+02 0.004 29.9 15.4 120 65-203 20-144 (230)
136 PRK15475 oxaloacetate decarbox 63.5 17 0.00038 39.6 6.4 114 335-453 131-250 (433)
137 PRK15476 oxaloacetate decarbox 63.3 17 0.00038 39.6 6.4 113 336-453 132-250 (433)
138 PRK15477 oxaloacetate decarbox 63.3 17 0.00038 39.6 6.4 113 336-453 132-250 (433)
139 PF02040 ArsB: Arsenical pump 62.1 2.8E+02 0.0061 31.5 22.4 38 190-227 116-153 (423)
140 KOG0573 Asparagine synthase [A 61.9 65 0.0014 36.3 10.5 108 594-712 224-335 (520)
141 PF01171 ATP_bind_3: PP-loop f 60.8 25 0.00054 34.7 6.9 92 629-729 1-106 (182)
142 TIGR01109 Na_pump_decarbB sodi 60.1 43 0.00093 36.1 8.5 114 335-453 60-179 (354)
143 COG0786 GltS Na+/glutamate sym 59.6 1.2E+02 0.0027 33.7 12.2 103 49-158 220-324 (404)
144 COG2086 FixA Electron transfer 58.6 28 0.0006 36.7 6.9 106 637-755 36-149 (260)
145 PRK12563 sulfate adenylyltrans 57.3 26 0.00056 38.0 6.6 36 629-664 39-74 (312)
146 TIGR00930 2a30 K-Cl cotranspor 56.8 5.1E+02 0.011 32.9 43.8 99 469-589 574-677 (953)
147 COG2985 Predicted permease [Ge 55.4 49 0.0011 37.6 8.4 112 76-201 396-510 (544)
148 cd01993 Alpha_ANH_like_II This 54.2 1E+02 0.0022 30.0 10.0 38 629-666 1-40 (185)
149 COG3180 AbrB Putative ammonia 54.1 3E+02 0.0066 30.3 14.0 122 285-414 10-136 (352)
150 COG3969 Predicted phosphoadeno 54.0 28 0.00061 37.7 6.0 54 629-689 29-83 (407)
151 COG0679 Predicted permeases [G 53.3 2.1E+02 0.0045 31.0 13.0 104 307-412 11-116 (311)
152 PF03812 KdgT: 2-keto-3-deoxyg 52.4 81 0.0018 34.0 9.1 76 78-166 174-249 (314)
153 cd01992 PP-ATPase N-terminal d 49.5 96 0.0021 30.3 9.0 57 629-690 1-57 (185)
154 cd01984 AANH_like Adenine nucl 49.5 18 0.0004 30.6 3.3 45 566-610 35-83 (86)
155 PF05684 DUF819: Protein of un 48.4 2.1E+02 0.0045 32.1 12.1 97 332-432 52-152 (378)
156 PF05982 DUF897: Domain of unk 48.3 1E+02 0.0022 33.5 9.2 76 79-167 184-262 (327)
157 TIGR01625 YidE_YbjL_dupl AspT/ 46.5 71 0.0015 30.9 7.1 92 307-400 23-121 (154)
158 cd01713 PAPS_reductase This do 46.5 1.2E+02 0.0025 28.8 8.9 34 629-663 1-34 (173)
159 PF04172 LrgB: LrgB-like famil 46.1 3.5E+02 0.0075 27.8 13.2 70 124-202 61-130 (215)
160 PF06826 Asp-Al_Ex: Predicted 44.0 2.3E+02 0.005 27.8 10.4 93 304-401 22-121 (169)
161 TIGR00793 kdgT 2-keto-3-deoxyg 43.4 2.1E+02 0.0046 30.8 10.4 76 78-166 174-249 (314)
162 TIGR00840 b_cpa1 sodium/hydrog 40.6 1.7E+02 0.0037 34.6 10.4 75 336-411 68-151 (559)
163 COG1883 OadB Na+-transporting 40.2 11 0.00024 39.6 0.5 106 336-453 82-194 (375)
164 PF13593 DUF4137: SBF-like CPA 38.8 3.9E+02 0.0084 29.0 12.2 90 308-400 7-98 (313)
165 PF04018 DUF368: Domain of unk 36.8 5.3E+02 0.012 27.2 15.1 43 45-89 54-96 (257)
166 PF03390 2HCT: 2-hydroxycarbox 35.7 7E+02 0.015 28.3 14.4 90 72-167 268-359 (414)
167 PRK06806 fructose-bisphosphate 34.9 3E+02 0.0066 29.4 10.4 102 552-658 17-131 (281)
168 PRK04288 antiholin-like protei 34.9 5.4E+02 0.012 26.7 15.8 82 109-202 64-146 (232)
169 TIGR00342 thiazole biosynthesi 34.8 2E+02 0.0043 32.1 9.4 40 620-666 168-207 (371)
170 PF02568 ThiI: Thiamine biosyn 34.6 3.2E+02 0.007 27.6 9.9 36 629-668 5-40 (197)
171 PF05982 DUF897: Domain of unk 34.3 3.7E+02 0.008 29.4 10.7 69 365-433 57-125 (327)
172 PRK10660 tilS tRNA(Ile)-lysidi 34.1 2.6E+02 0.0057 31.9 10.4 58 629-691 17-75 (436)
173 PF02601 Exonuc_VII_L: Exonucl 32.3 85 0.0018 34.1 5.9 66 629-731 16-87 (319)
174 PF03547 Mem_trans: Membrane t 31.4 4.2E+02 0.0091 29.2 11.5 86 306-392 244-335 (385)
175 COG2035 Predicted membrane pro 30.4 3.9E+02 0.0085 28.3 9.9 50 45-96 55-106 (276)
176 PF01507 PAPS_reduct: Phosphoa 29.5 1.4E+02 0.0029 28.7 6.3 51 629-690 1-51 (174)
177 PRK01663 C4-dicarboxylate tran 29.4 8.9E+02 0.019 27.6 14.6 37 132-168 66-102 (428)
178 cd01995 ExsB ExsB is a transcr 29.4 2.2E+02 0.0048 27.4 7.8 85 629-730 1-87 (169)
179 PRK10577 iron-hydroxamate tran 28.4 1.1E+03 0.025 28.5 15.9 57 69-126 392-448 (668)
180 TIGR03869 F420-0_ABCperm propo 28.2 8.2E+02 0.018 26.7 16.7 57 69-126 48-104 (325)
181 TIGR00659 conserved hypothetic 27.8 6.9E+02 0.015 25.8 14.3 74 119-202 66-140 (226)
182 KOG1650 Predicted K+/H+-antipo 27.7 8E+02 0.017 30.3 13.6 82 118-207 314-397 (769)
183 PRK12933 secD preprotein trans 27.2 1.1E+03 0.023 28.2 13.8 56 144-202 465-522 (604)
184 PRK15475 oxaloacetate decarbox 26.9 5.3E+02 0.011 28.7 10.3 99 257-358 230-335 (433)
185 PF08659 KR: KR domain; Inter 26.7 3.5E+02 0.0075 26.5 8.7 86 633-730 4-92 (181)
186 cd01985 ETF The electron trans 25.8 3.7E+02 0.0081 26.2 8.8 91 638-742 19-116 (181)
187 cd01996 Alpha_ANH_like_III Thi 25.6 4.6E+02 0.0099 24.6 9.1 23 629-651 3-25 (154)
188 COG2431 Predicted membrane pro 25.6 8.4E+02 0.018 26.0 18.7 44 370-413 170-213 (297)
189 PF01032 FecCD: FecCD transpor 25.5 8.1E+02 0.018 26.5 11.9 60 67-127 35-94 (311)
190 PRK15477 oxaloacetate decarbox 25.0 6E+02 0.013 28.3 10.3 99 257-358 230-335 (433)
191 PRK15476 oxaloacetate decarbox 25.0 6E+02 0.013 28.2 10.3 99 257-358 230-335 (433)
192 PF02355 SecD_SecF: Protein ex 24.9 7E+02 0.015 24.9 16.6 25 250-274 165-189 (189)
193 cd01118 ArsB_permease Anion pe 24.8 1E+03 0.022 26.6 21.0 24 65-88 10-33 (416)
194 COG0679 Predicted permeases [G 23.9 9.3E+02 0.02 25.9 29.8 135 305-444 167-304 (311)
195 COG1570 XseA Exonuclease VII, 23.9 1.3E+02 0.0028 34.1 5.4 27 705-731 177-205 (440)
196 COG0175 CysH 3'-phosphoadenosi 23.5 3.8E+02 0.0083 28.2 8.7 25 629-653 41-65 (261)
197 PF03600 CitMHS: Citrate trans 23.2 9.8E+02 0.021 25.9 15.7 17 191-207 117-133 (351)
198 COG4827 Predicted transporter 23.1 8.1E+02 0.018 24.9 12.7 43 116-158 11-56 (239)
199 PRK12737 gatY tagatose-bisphos 22.9 3.2E+02 0.0069 29.3 8.0 66 552-619 17-86 (284)
200 TIGR02230 ATPase_gene1 F0F1-AT 22.9 2.3E+02 0.005 25.3 5.7 39 150-188 51-89 (100)
201 COG3763 Uncharacterized protei 22.8 4.4E+02 0.0096 21.9 6.7 35 248-285 9-43 (71)
202 PRK04125 murein hydrolase regu 22.8 6.7E+02 0.015 23.9 9.3 109 285-393 12-123 (141)
203 TIGR00832 acr3 arsenical-resis 22.6 1E+03 0.022 25.9 12.9 96 347-447 55-156 (328)
204 PF00375 SDF: Sodium:dicarboxy 22.5 5.6E+02 0.012 28.6 10.4 98 113-212 181-283 (390)
205 COG1597 LCB5 Sphingosine kinas 22.5 1.3E+02 0.0029 32.4 5.1 54 697-751 35-89 (301)
206 PRK10696 tRNA 2-thiocytidine b 21.8 2E+02 0.0044 30.1 6.3 36 629-664 31-68 (258)
207 COG0037 MesJ tRNA(Ile)-lysidin 21.7 2.1E+02 0.0045 30.5 6.5 56 627-690 22-77 (298)
208 PF13194 DUF4010: Domain of un 21.7 8.6E+02 0.019 24.7 16.6 25 293-317 139-164 (211)
209 KOG2563 Permease of the major 21.5 1.3E+03 0.028 26.7 17.2 26 389-415 389-414 (480)
210 PF07905 PucR: Purine cataboli 21.2 2.9E+02 0.0064 25.3 6.5 97 500-604 23-120 (123)
211 TIGR02359 thiW thiW protein. L 21.2 7.7E+02 0.017 24.0 12.4 48 77-129 34-84 (160)
212 PRK12857 fructose-1,6-bisphosp 21.1 3.5E+02 0.0077 29.0 7.9 65 553-619 18-86 (284)
213 PRK11228 fecC iron-dicitrate t 21.0 1.1E+03 0.024 25.7 17.7 24 69-92 46-69 (323)
214 COG3371 Predicted membrane pro 20.7 5.8E+02 0.012 25.4 8.4 86 45-146 49-135 (181)
215 COG0395 UgpE ABC-type sugar tr 20.6 9.3E+02 0.02 25.7 11.0 89 136-226 71-161 (281)
216 PRK10711 hypothetical protein; 20.5 9.7E+02 0.021 24.9 13.8 102 109-226 59-161 (231)
217 TIGR02185 Trep_Strep conserved 20.2 8.7E+02 0.019 24.2 14.2 24 365-388 161-184 (189)
218 COG0151 PurD Phosphoribosylami 20.2 1.5E+02 0.0033 33.4 4.9 34 705-744 51-84 (428)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=6.4e-152 Score=1355.97 Aligned_cols=735 Identities=33% Similarity=0.611 Sum_probs=669.9
Q ss_pred ccccccc------ccCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchh
Q 004016 26 LCEPLAT------FRGATPFLRRVTSHFPIMVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQEL 99 (779)
Q Consensus 26 ~c~~~~~------~~~~~p~~~~~~l~~~l~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~ 99 (779)
+|+.... |+|+|| ++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|+++.+
T Consensus 18 ~c~~~~~~~s~g~~~g~~p------l~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~ 91 (832)
T PLN03159 18 VCYAPMMITTNGIWQGDNP------LDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVF 91 (832)
T ss_pred ccccCCCccCCcccccCCc------ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhh
Confidence 6885322 999999 9999999999999999999999999999999999999999999999999999888
Q ss_pred hhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhH
Q 004016 100 KELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTL 179 (779)
Q Consensus 100 ~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~ 179 (779)
.+.+||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|++++++++. ..........+
T Consensus 92 ~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~ 170 (832)
T PLN03159 92 ANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFI 170 (832)
T ss_pred hhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHH
Confidence 99999988888999999999999999999999999999999999999999999999999988887743 21111123567
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Q 004016 180 PMVATLEATISFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVII 259 (779)
Q Consensus 180 l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (779)
+++|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++ ..+... +.+....++.++..++++++
T Consensus 171 l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~-~~l~~~--~~~~~~~l~~~l~~~~f~~~ 247 (832)
T PLN03159 171 LFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALA-IALAEN--DSTSLASLWVLLSSVAFVLF 247 (832)
T ss_pred HHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc--CCcchhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999888 665543 22223456777777888889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHh
Q 004016 260 IVFVVRPIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVA 339 (779)
Q Consensus 260 ~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~l 339 (779)
+++++||++.|+.+|++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +|.++.+.+|++++++++
T Consensus 248 ~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~l 326 (832)
T PLN03159 248 CFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGL 326 (832)
T ss_pred HHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHH
Confidence 9999999999999999998888899999999999999999999999999999999999998 478999999999999999
Q ss_pred hHHHHHHHhcccccccccchh-hHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhc
Q 004016 340 FIPCFIINTGRRVDLYSIQFN-HFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQR 418 (779)
Q Consensus 340 flPlFF~~~G~~~d~~~l~~~-~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~ 418 (779)
|+|+||+.+|+++|+..+... .|..+++++++++++|+++++++++++|+|++|++.+|++||+||+++++++++|++.
T Consensus 327 flPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~ 406 (832)
T PLN03159 327 LLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQ 406 (832)
T ss_pred HHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 999999999999999887543 4655667778889999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhHHHHHHHhhcccchhhhhhcccccccCCcccceEEEeecCCCChHHHHHHHHhcCCC-C
Q 004016 419 LQITDESFAIMVITAMFQSAIIIPLVKLVYDSSRKYVAYRKRTIQHCESHAELRILVCIPENDHVPTAINLLKASNPP-Q 497 (779)
Q Consensus 419 ~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~e~riLv~i~~~~~v~~li~L~~~~~~~-~ 497 (779)
|+++++.|++++++++++|.+++|+++++|||+||+..|++|++|+.++++|+|||+|+|++||+++|++|+|+++++ +
T Consensus 407 gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~ 486 (832)
T PLN03159 407 EVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKR 486 (832)
T ss_pred CccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCceEEEEEeeeccCCCCccccccccCCCCCC---CCCCcchhHHHHHHHHHHhcCcceEEEEEEEeccCCChHHHHHHH
Q 004016 498 SHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSS---SKPAKIDPLLHAFFRYQQTNKAYVSVQCFTAVAPYASMHDDICSM 574 (779)
Q Consensus 498 ~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~---~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~ 574 (779)
+|+++|++||||++||++|++++|+.+++... ....++|+++++|+.|++++ ++|+||++|++|||++||||||++
T Consensus 487 sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~ 565 (832)
T PLN03159 487 SPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCNL 565 (832)
T ss_pred CCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHHH
Confidence 99999999999999999999999987643211 12355899999999999764 579999999999999999999999
Q ss_pred HhhcCccEEEeccccC---------CChhhHHHHHHhhhcCCCceEEEecCCCc-----ccccccccceEEEeecCCccH
Q 004016 575 AFQKATSLIIFPFLKT---------EPTLTKKVINNVLSMSPCSIGLLYDRSLA-----IDYRSFQCRRVCVLFIGGADD 640 (779)
Q Consensus 575 A~e~~~~lIilp~h~~---------~~~~~~~~n~~vl~~apCsVgIlvdrg~~-----~~~~~~~~~~i~v~f~GG~dd 640 (779)
|+||++|+||+||||. ++..+|.+|+|||++||||||||||||.. +.+... + ||+++|+|||||
T Consensus 566 A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~-~-~v~~~F~GG~DD 643 (832)
T PLN03159 566 AEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVS-H-HVAVLFFGGPDD 643 (832)
T ss_pred HHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccc-e-eEEEEecCCcch
Confidence 9999999999999981 24689999999999999999999999965 122223 6 999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEEEEEecCCCCC--------------------CccchhhHHHHHHHhhhhcCCCCCEEEEE
Q 004016 641 REALALGARMGRNPSIHLTVTRFVVTNPTMS--------------------DFIDEDRDQAMINDFRFVNLDSKNVEYVE 700 (779)
Q Consensus 641 reAL~~a~rma~~~~v~ltv~~~~~~~~~~~--------------------~~~e~~~d~~~i~~~~~~~~~~~~v~y~e 700 (779)
||||+||+|||+||++++||+||++++...+ +++|+++||++++||+.++..+++|.|+|
T Consensus 644 REALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E 723 (832)
T PLN03159 644 REALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTE 723 (832)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9999999999999999999999997532211 35688999999999999998889999999
Q ss_pred EeecChHHHHHHHHhhhcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeeecc
Q 004016 701 EGVEEGFETLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQAY 774 (779)
Q Consensus 701 ~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~~~ 774 (779)
|+|+|++||.++||+++++|||+||||+|+.+|++|+||+||+||||||+|||+|||+||++++||||||||+.
T Consensus 724 ~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~ 797 (832)
T PLN03159 724 KVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVG 797 (832)
T ss_pred EecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeecc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999964
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-126 Score=1118.14 Aligned_cols=730 Identities=36% Similarity=0.646 Sum_probs=668.8
Q ss_pred ccCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHH
Q 004016 33 FRGATPFLRRVTSHFPIMVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAI 112 (779)
Q Consensus 33 ~~~~~p~~~~~~l~~~l~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l 112 (779)
|+|+|| ++|++|++++|+++++++++++++++||+|||+++++|++||++||+.+|+++.+.+.+||..+...+
T Consensus 11 ~~~~~~------~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l 84 (769)
T KOG1650|consen 11 FPGVNP------LKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVL 84 (769)
T ss_pred ccCCCc------cccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHH
Confidence 889999 99999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccch-h---hhhhHHHHHHHHhh
Q 004016 113 NVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDD-E---LRSTLPMVATLEAT 188 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~-~---~~~~~l~lg~~ls~ 188 (779)
++++.+|+.+++|+.|+|+|.+.+|+++|++..+|+.++++|++.|.++...+........ . ...+..++..+++.
T Consensus 85 ~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (769)
T KOG1650|consen 85 ELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSI 164 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999888877754333111 1 11266788899999
Q ss_pred hhHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004016 189 ISFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPII 268 (779)
Q Consensus 189 Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~ 268 (779)
|+||+++++|.|+|++++++||+++++++++|+.+|.++++. .+..+. ...+.....|.+...+++++++.+++||.+
T Consensus 165 tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~ 242 (769)
T KOG1650|consen 165 TSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALA-LAFSSE-LKLSPLRSVWDLVLVIGFVLFLFFVVRPLM 242 (769)
T ss_pred chhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHH-HHHhcc-CCCcchHHHHHHHHHHHHHHheeeehhhhH
Confidence 999999999999999999999999999999999999988887 666554 222234457888888899999999999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHH
Q 004016 269 FWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTG-QNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIIN 347 (779)
Q Consensus 269 ~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg-~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~ 347 (779)
.|+.||+|+++++++.++..++..+++++.+++.++ .|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+.
T Consensus 243 ~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~ 322 (769)
T KOG1650|consen 243 KWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAI 322 (769)
T ss_pred HHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHH
Q 004016 348 TGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFA 427 (779)
Q Consensus 348 ~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~ 427 (779)
+|+++|+..+.. |......+...+++|++++..++.++|+|+||++.+|++|++||.+|+++++.+++.|+++++.|+
T Consensus 323 ~G~k~di~~i~~--~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~ 400 (769)
T KOG1650|consen 323 SGLKTDISRINK--WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFT 400 (769)
T ss_pred hccceeHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHH
Confidence 999999988765 666777778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcccchhhhhhcccccccCCcccceEEEeecCCCChHHHHHHHHhcCCC-CCCceEEEEE
Q 004016 428 IMVITAMFQSAIIIPLVKLVYDSSRKYVAYRKRTIQHCESHAELRILVCIPENDHVPTAINLLKASNPP-QSHVGVYVMN 506 (779)
Q Consensus 428 ~lv~~~ll~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~e~riLv~i~~~~~v~~li~L~~~~~~~-~~p~~v~~lh 506 (779)
+++++++++|.+++|+++.+|||.+++..|++|++|+.++++|+|+|.|+|+++|++++++++|+++++ ++|+++|++|
T Consensus 401 ~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lh 480 (769)
T KOG1650|consen 401 VMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYALH 480 (769)
T ss_pred HHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 6699999999
Q ss_pred eeeccCCCCccccccccCCCC-CCCCCCcchhHHHHHHHHHHhcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEe
Q 004016 507 LEEYIGRSMPVVIPHRLDKNP-SSSKPAKIDPLLHAFFRYQQTNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIF 585 (779)
Q Consensus 507 lvel~~r~~~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIil 585 (779)
+||+.+|+.|++++|+.+++. .......++++.++|+.|++.+...+.++++|+++|+++||||||.+|.++++++|++
T Consensus 481 lveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liil 560 (769)
T KOG1650|consen 481 LVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIIL 560 (769)
T ss_pred eeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEe
Confidence 999999999999999887652 2223344678999999999854467999999999999999999999999999999999
Q ss_pred ccccC---------CChhhHHHHHHhhhcCCCceEEEecCCCc-----ccccccccceEEEeecCCccHHHHHHHHHHHh
Q 004016 586 PFLKT---------EPTLTKKVINNVLSMSPCSIGLLYDRSLA-----IDYRSFQCRRVCVLFIGGADDREALALGARMG 651 (779)
Q Consensus 586 p~h~~---------~~~~~~~~n~~vl~~apCsVgIlvdrg~~-----~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma 651 (779)
||||. ++..+|.+|++|+++|||||||+||||.. +..... + +|+++|+||+||||||++++||+
T Consensus 561 pfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~-~-~v~~lF~GG~DDrEALa~~~rm~ 638 (769)
T KOG1650|consen 561 PFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSS-Y-KVVVLFLGGKDDREALALAKRMA 638 (769)
T ss_pred ehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccce-e-EEEEEecCChhhHHHHHHHHHHh
Confidence 99992 26789999999999999999999999721 222233 6 99999999999999999999999
Q ss_pred cCCCeEEEEEEEEecCCCCC----CccchhhHHHHHHHh-hhhcCCCCCEEEE-EEeecChHHHHHHHHhhhcCCcEEEE
Q 004016 652 RNPSIHLTVTRFVVTNPTMS----DFIDEDRDQAMINDF-RFVNLDSKNVEYV-EEGVEEGFETLRIINAIANDFDLFLA 725 (779)
Q Consensus 652 ~~~~v~ltv~~~~~~~~~~~----~~~e~~~d~~~i~~~-~~~~~~~~~v~y~-e~~v~~~~e~~~~i~~~~~~~dL~iV 725 (779)
+||++++||+||+++++..+ +++++++|++..+++ +..+..+.++.|. ||+|+|+.||.+++|++++||||++|
T Consensus 639 ~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~iv 718 (769)
T KOG1650|consen 639 ENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLFIV 718 (769)
T ss_pred hCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccceEEE
Confidence 99999999999998754322 478899999999998 6566667788898 69999999999999999999999999
Q ss_pred cccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeeecc
Q 004016 726 GRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQAY 774 (779)
Q Consensus 726 Gr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~~~ 774 (779)
||+++.+++.++|++||+||||||+|||.|+|+||.+++||||+|||..
T Consensus 719 Gr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 719 GRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY 767 (769)
T ss_pred ecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence 9999999999999999999999999999999999999999999999975
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=9.5e-47 Score=440.67 Aligned_cols=412 Identities=17% Similarity=0.162 Sum_probs=327.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhc
Q 004016 51 VVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSAR 130 (779)
Q Consensus 51 ~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle 130 (779)
.++.++.+++.++.++..++||+|+|+++|||++|+++||+++|+++ ..+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999863 24568899999999999999999
Q ss_pred cChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHH
Q 004016 131 IDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGR 210 (779)
Q Consensus 131 ~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 210 (779)
+|++.+++.+|+++.+|..++++|+++++.++++++. .|..++++|.+++.||++++.++++|+|+++|+.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~-------~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL-------RWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 9999999999999999999999999988877776653 257899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 004016 211 LALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVI----VMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHL 286 (779)
Q Consensus 211 l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~ 286 (779)
.+++.++++|+.++++++++ ..+.....+.+.....+.++..+ +++++..++.||+++|+.++. .+|.++
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~ 221 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMI-PLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFT 221 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHH
Confidence 99999999999999998877 55443201111111112222222 223333445666666665442 367888
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHH
Q 004016 287 VALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVE 366 (779)
Q Consensus 287 ~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~ 366 (779)
..+++++++++++++.+|+|+++|||++|+++++. +.++++.++++++ .++|+|+||+.+||++|+..+... ++.++
T Consensus 222 ~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~-~~~il 298 (621)
T PRK03562 222 AVALFLVFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN-PLRIL 298 (621)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH-HHHHH
Confidence 88899999999999999999999999999999985 6899999999998 799999999999999999876543 33344
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHH
Q 004016 367 MVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKL 446 (779)
Q Consensus 367 ~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~ 446 (779)
.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|++ .+|++..
T Consensus 299 ~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~-~tP~l~~ 377 (621)
T PRK03562 299 ILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMA-ATPLLLV 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 555667899999999999999999999999999999999999999999999999999999999987777554 5555555
Q ss_pred hhcccc-hhhhhhcccccccCCcccceEEEeecCCCChHHHHHHHHh
Q 004016 447 VYDSSR-KYVAYRKRTIQHCESHAELRILVCIPENDHVPTAINLLKA 492 (779)
Q Consensus 447 l~~p~~-~~~~~~~r~i~~~~~~~e~riLv~i~~~~~v~~li~L~~~ 492 (779)
+|++.. +.... .+. +...++.+-|+++|=++ +....+.+.++.
T Consensus 378 ~~~~~~~~~~~~-~~~-~~~~~~~~~~vII~G~G-r~G~~va~~L~~ 421 (621)
T PRK03562 378 LLDRLEQSRTEE-ARE-ADEIDEQQPRVIIAGFG-RFGQIVGRLLLS 421 (621)
T ss_pred hhhHHHHHHhhh-ccc-ccccccccCcEEEEecC-hHHHHHHHHHHh
Confidence 554431 11111 111 11111224578888665 444555555443
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=9.5e-47 Score=439.11 Aligned_cols=378 Identities=15% Similarity=0.157 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhcc
Q 004016 52 VFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARI 131 (779)
Q Consensus 52 ~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~ 131 (779)
++..+.++++++.+++.++||+|+|++++||++|+++||+++|..+ ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3457788889999999999999999999999999999999999853 245788999999999999999999
Q ss_pred ChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHHH
Q 004016 132 DKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGRL 211 (779)
Q Consensus 132 d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l 211 (779)
|++.+|+.++.....+..++++|+++++++++.++. .+..++++|+++|.||++++.++++|+|+++++.||+
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW-------SLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 999999998888888888999999988877776653 2577899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q 004016 212 ALSSSLLSSLIGWFAPTFYIYASENAL--VGITRR----TVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDH 285 (779)
Q Consensus 212 ~ls~a~i~D~~~~ill~~~~~~~~~~~--~~~~~~----~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~ 285 (779)
++++++++|+.+|++++++ ..+.... ++.+.. ...+.++..+++++++.++.|+..+|+.++.++.+ .+|.+
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~ 227 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLL-PAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELF 227 (558)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHH
Confidence 9999999999999888776 5443210 111111 12345566667777788899999999999887654 57788
Q ss_pred HHHHHHHHHHHHHH-HHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHH
Q 004016 286 LVALNVIVLVVALV-GELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLA 364 (779)
Q Consensus 286 ~~~il~~~l~~~~~-se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~ 364 (779)
+..++++++++++. ++.+|+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+.+|+++|+..+... +..
T Consensus 228 ~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~-~~~ 304 (558)
T PRK10669 228 TLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ-PLA 304 (558)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH-HHH
Confidence 88788888887764 6999999999999999999985 5788887777765 789999999999999999876432 333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHH
Q 004016 365 VEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLV 444 (779)
Q Consensus 365 ~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv 444 (779)
...++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+++.|+++++.|+.+++++++|+.++|++.
T Consensus 305 ~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 305 VLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678899999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHhhccc
Q 004016 445 KLVYDSS 451 (779)
Q Consensus 445 ~~l~~p~ 451 (779)
+...+..
T Consensus 385 ~~~~~~~ 391 (558)
T PRK10669 385 TLLERYL 391 (558)
T ss_pred HHhhHHH
Confidence 7765433
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=8.4e-46 Score=432.12 Aligned_cols=411 Identities=17% Similarity=0.183 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhcc
Q 004016 52 VFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARI 131 (779)
Q Consensus 52 ~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~ 131 (779)
++.++.+++.++.++..+++|+|+|+++|||++|+++||+++|.++ ..+.+..++++|++++||.+|+|+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678889999999999999999999999999999999999999874 234578999999999999999999
Q ss_pred ChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHHH
Q 004016 132 DKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGRL 211 (779)
Q Consensus 132 d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l 211 (779)
|++.+++.+|+++.+|..++++|+++++.++++++. .|..++++|.+++.||++++.++|+|+|+++++.||+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~-------~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF-------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 999999999999999999999999877766655432 2678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004016 212 ALSSSLLSSLIGWFAPTFYIYASENALVGIT--RRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHLVAL 289 (779)
Q Consensus 212 ~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~i 289 (779)
+++..+++|+.++++++++ ..+... .... .....+.++..++++++..++.||+.+|+.+. +.+|.++..+
T Consensus 149 ~l~vll~~Di~~i~ll~l~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~ 221 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALV-PLLAGS-ADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAA 221 (601)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHH
Confidence 9999999999999888877 555432 1111 11111222222222333345556666655433 2467888888
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHH
Q 004016 290 NVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVI 369 (779)
Q Consensus 290 l~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~ii 369 (779)
++++++++++++.+|+|+++|||++|+++++. +.++++.++++++ .++|+|+||+.+||++|+..+... |+.++.++
T Consensus 222 l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~-~~~il~~~ 298 (601)
T PRK03659 222 LLLVLGSALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH-LLWVLISV 298 (601)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh-HHHHHHHH
Confidence 99999999999999999999999999999995 6899999999998 799999999999999999877543 44455566
Q ss_pred HHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhc
Q 004016 370 LIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLVYD 449 (779)
Q Consensus 370 v~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~ 449 (779)
++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|+ +.+|++..+|+
T Consensus 299 ~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~-~~tP~l~~~~~ 377 (601)
T PRK03659 299 VVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSM-MTTPLLMKLID 377 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHhH
Confidence 77788999999999999999999999999999999999999999999999999999999988888866 55666666665
Q ss_pred c--cchhhhhhcccccccCCcccceEEEeecCCCChHHHHHHHH
Q 004016 450 S--SRKYVAYRKRTIQHCESHAELRILVCIPENDHVPTAINLLK 491 (779)
Q Consensus 450 p--~~~~~~~~~r~i~~~~~~~e~riLv~i~~~~~v~~li~L~~ 491 (779)
| ++++.............+.+-++++|=++ +-...+.+.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~vII~G~G-r~G~~va~~L~ 420 (601)
T PRK03659 378 KWLARRLNGPEEEDEKPWVEDDKPQVIIVGFG-RFGQVIGRLLM 420 (601)
T ss_pred HHHHHhhccccccccccccccccCCEEEecCc-hHHHHHHHHHH
Confidence 5 33321110000000011224578888654 44444555444
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-45 Score=405.62 Aligned_cols=381 Identities=20% Similarity=0.284 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhh
Q 004016 50 MVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSA 129 (779)
Q Consensus 50 ~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gl 129 (779)
...+.|+.++++++.+.+.++||+|+|+++||+++|+++||..++... +..+.++.++++|++++||.+|+
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~---------~~~~~i~~laelGvi~LlF~~GL 75 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLII---------ESSEIIELLAELGVVFLLFLIGL 75 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccC---------CchHHHHHHHHHhHHHHHHHHHH
Confidence 357889999999999999999999999999999999999995555432 56889999999999999999999
Q ss_pred ccChhHHHhcchh-HHHHHHHHHHHHHHHHHHHHHH-HhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCCh
Q 004016 130 RIDKGIVKKSGKL-AIVIGVGAFIIPLIVSILTTLF-IRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSE 207 (779)
Q Consensus 130 e~d~~~l~~~~~~-~~~ia~~~~l~p~~~g~~~~~~-l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~ 207 (779)
|+|++++||++|+ +...+..++..|++++....+. ++. .+..++++|.+++.||+++++++++|+|.++++
T Consensus 76 E~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-------~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~ 148 (397)
T COG0475 76 EFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL-------SLIAALFLGAALALSSTAIVLKILMELGLLKTR 148 (397)
T ss_pred CcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------ChHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 9999999999999 8888888999998888655443 332 257799999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 004016 208 IGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHLV 287 (779)
Q Consensus 208 ~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~ 287 (779)
.||+++++++++|+.++++++++ .....+ ++.....++..+....++.++..+..|++.+|+.|+..+. +.+|..+.
T Consensus 149 ~g~~~l~~~i~~Di~~i~lLai~-~~l~~~-g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~ 225 (397)
T COG0475 149 EGQLILGALVFDDIAAILLLAIV-PALAGG-GSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFIL 225 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHccC-CCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHH
Confidence 99999999999999999999998 776644 2222222444555556666666665677777777775432 34678889
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHH
Q 004016 288 ALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEM 367 (779)
Q Consensus 288 ~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~ 367 (779)
.++.+++.+++++|.+|+|+++|||++|+++++.....++++++++++.+++|+|+||+.+|+++|++.+... +..+..
T Consensus 226 ~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~-~~~~l~ 304 (397)
T COG0475 226 FVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN-LLLILL 304 (397)
T ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999998644479999999998779999999999999999988754 333677
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHh
Q 004016 368 VILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLV 447 (779)
Q Consensus 368 iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l 447 (779)
++.+..++|++++++.++..|.+.++++..|+.+.++|+++++.++.+.+ +.++++.++..+.+++++|.+.+++.+.+
T Consensus 305 ~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~ 383 (397)
T COG0475 305 LVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPIL 383 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999999877 67888899988888888888777777776
Q ss_pred hccc
Q 004016 448 YDSS 451 (779)
Q Consensus 448 ~~p~ 451 (779)
++..
T Consensus 384 ~~~~ 387 (397)
T COG0475 384 LKRL 387 (397)
T ss_pred HHHh
Confidence 6543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=6.9e-40 Score=381.32 Aligned_cols=384 Identities=11% Similarity=0.033 Sum_probs=316.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHh
Q 004016 49 IMVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLS 128 (779)
Q Consensus 49 l~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~G 128 (779)
...++++++++++++.+++.+++|+|+|.+++++++|+++||+++|.++ | +..+..+.++++|+++++|..|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~------~--~~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ------F--DNYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc------c--CcHHHHHHHHHHHHHHHHHcCc
Confidence 3457889999999999999999999999999999999999999999753 1 3456789999999999999999
Q ss_pred hccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCc-cCCh
Q 004016 129 ARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKL-LNSE 207 (779)
Q Consensus 129 le~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-~~s~ 207 (779)
+|+|++.+|+++++++.++..++++|++++...++++... .|..++++|++++.||++++.++++|+|+ ++++
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~ 149 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence 9999999999999999999999999998855444444322 36889999999999999999999999995 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 004016 208 IGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHLV 287 (779)
Q Consensus 208 ~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~ 287 (779)
+++++.++|.+||.++++++.+. ..+.....+......++.++..+++.+++++++++.+.|+.+|.... .++.+..
T Consensus 150 v~~~l~~eS~~nD~~ai~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i 226 (562)
T PRK05326 150 VASTLEIESGSNDPMAVFLTITL-IELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPI 226 (562)
T ss_pred HHhHhhhhhhcccHHHHHHHHHH-HHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHH
Confidence 99999999999999999888777 55443311111122234445556666777788888999999887421 2456778
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHH
Q 004016 288 ALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEM 367 (779)
Q Consensus 288 ~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~ 367 (779)
+++++++++++++|.+|.|+++|+|++|+++++.++..+.-.+++.+...+++.|+||+.+|+.+|++.+....+...++
T Consensus 227 ~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i 306 (562)
T PRK05326 227 LVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999986555555666666668999999999999999998775433333333
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHhHHHHHHH
Q 004016 368 VILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQIT-DESFAIMVITAMFQSAIIIPLVKL 446 (779)
Q Consensus 368 iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~-~~~f~~lv~~~ll~t~i~~plv~~ 446 (779)
.+++.+++|++++++..+.+++++||+..+||. ++||+++++++..+...|+.+ +..|+++.+++++|+.+.++.++.
T Consensus 307 ~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~ 385 (562)
T PRK05326 307 ALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPW 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHH
Confidence 445667899999999999999999999999994 899999999999999999886 467888888888888888888877
Q ss_pred hhcc
Q 004016 447 VYDS 450 (779)
Q Consensus 447 l~~p 450 (779)
+.|+
T Consensus 386 ~a~~ 389 (562)
T PRK05326 386 AARK 389 (562)
T ss_pred HHHH
Confidence 6643
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.1e-35 Score=316.18 Aligned_cols=271 Identities=20% Similarity=0.282 Sum_probs=232.5
Q ss_pred HHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcc
Q 004016 61 ILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSG 140 (779)
Q Consensus 61 ~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~ 140 (779)
+++.+++.++||+|+|.+++++++|+++||+++|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4577789999999999999999999999999999763 235789999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHHHHHHHHHHH
Q 004016 141 KLAIVIGVGAFIIP-LIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGRLALSSSLLS 219 (779)
Q Consensus 141 ~~~~~ia~~~~l~p-~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~ 219 (779)
|++..++..++++| ++++..++++++. .+..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGL-------ALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 6777766666643 257899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 004016 220 SLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALV 299 (779)
Q Consensus 220 D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~ 299 (779)
|+++++++.+. ....++ .+.+.....+.+...+++.++.+.+.|+...|+.|+.+++++ +|.+...++.++++.+.+
T Consensus 145 D~~~i~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l 221 (273)
T TIGR00932 145 DIAVVPLLALL-PLLATS-ASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYF 221 (273)
T ss_pred HHHHHHHHHHH-HHHhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHH
Confidence 99999999888 655533 222222333444455556666677888889999988776543 577888899999999999
Q ss_pred HHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhccccc
Q 004016 300 GELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVD 353 (779)
Q Consensus 300 se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d 353 (779)
+|.+|.|+++|||++|+++++. +.++++.++++.+. ++|.|+||+++|+++|
T Consensus 222 a~~~g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 222 ADLLGLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHhCCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999999996 45788999999997 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.8e-39 Score=361.97 Aligned_cols=372 Identities=22% Similarity=0.364 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHh
Q 004016 59 VTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKK 138 (779)
Q Consensus 59 il~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~ 138 (779)
+++.+.+.+.++||+++|.+++|+++|+++||.+++..++ .....+.++++|+.+++|.+|+|+|.+.+|+
T Consensus 4 li~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~---------~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~ 74 (380)
T PF00999_consen 4 LILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP---------DNPSFELLAEIGLAFLLFEAGLELDIKELRR 74 (380)
T ss_dssp -----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----
T ss_pred EeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc---------hhhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3445666677899999999999999999999998885421 1467889999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHH-HHHHHHHH-hhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHHHHHHHH
Q 004016 139 SGKLAIVIGVGAFIIPLIV-SILTTLFI-RDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGRLALSSS 216 (779)
Q Consensus 139 ~~~~~~~ia~~~~l~p~~~-g~~~~~~l-~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a 216 (779)
++++++.+++.++++|+++ ++.+.+++ .... .+..++++|.+++.||++++.++++|.+..+++.++++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~ 149 (380)
T PF00999_consen 75 NWRRALALGLVGFLLPFILVGFLLSFFLFILGL-----SWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES 149 (380)
T ss_dssp --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred ccccccccccceeeehhhHHHHHHHHhhccchh-----hhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence 9999999999999999998 66666432 1111 368899999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 004016 217 LLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHLVALNVIVLVV 296 (779)
Q Consensus 217 ~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~ 296 (779)
++||+++++++.+. ....+.....+.......++..++..++.+++.+++..|+.|+. ++.++.+..++++.++..
T Consensus 150 ~i~d~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 225 (380)
T PF00999_consen 150 VINDIIAIILLSIL-ISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLL 225 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhh-hhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhh
Confidence 99999999988877 55542201111112222233333333334444444444444442 234677889999999999
Q ss_pred HHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccc--hhhHHHHHHHHHHHHH
Q 004016 297 ALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQ--FNHFLAVEMVILIAGT 374 (779)
Q Consensus 297 ~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~--~~~~~~~~~iiv~~~~ 374 (779)
++++|.+|.++++|+|++|+++++. +.++++.++++++.++++.|+||+.+|+++|++.+. ...+.....+.+...+
T Consensus 226 ~~~a~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~ 304 (380)
T PF00999_consen 226 YGLAEILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILL 304 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHH
Confidence 9999999999999999999999954 577779999999988999999999999999998884 4456556666666778
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhc
Q 004016 375 VKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLVYD 449 (779)
Q Consensus 375 ~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~ 449 (779)
+|++++++.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+.+
T Consensus 305 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~ 379 (380)
T PF00999_consen 305 GKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLR 379 (380)
T ss_dssp ------------------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------------
T ss_pred hhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999988888888776543
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=275.63 Aligned_cols=379 Identities=17% Similarity=0.180 Sum_probs=301.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHH
Q 004016 47 FPIMVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFT 126 (779)
Q Consensus 47 ~~l~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~ 126 (779)
+..|+ +..+..-+.++.+++.+..|+++|+.+||+++|++.||.--|.. ........++++|++++||-
T Consensus 3 h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFv----------ad~~La~~LAelGViLLmFg 71 (408)
T COG4651 3 HDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFV----------ADQTLAPELAELGVILLMFG 71 (408)
T ss_pred CCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcc----------cchhHHHHHHHhhHHHHHHh
Confidence 34443 33344456678889999999999999999999999999876764 23445558999999999999
Q ss_pred HhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCC
Q 004016 127 LSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNS 206 (779)
Q Consensus 127 ~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s 206 (779)
+|++++++++......++--++.++.+....|..+++.+++.+ ...+.+|.++|..|..+..|-++|.++.++
T Consensus 72 vGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lidt 144 (408)
T COG4651 72 VGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF-------GTGIVFGLALSVASTVVLLRALEERQLIDT 144 (408)
T ss_pred cchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc-------ccceeeeehhhhHHHHHHHHHHHHhccccc
Confidence 9999999999877766666777777777788888888887654 567889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004016 207 EIGRLALSSSLLSSLIGWFAPTFYIYASENALVGIT--R----RTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKP 280 (779)
Q Consensus 207 ~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~--~----~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~ 280 (779)
+-||++++.-+++|+..++.+... .+.....++.+ . ....+...+...|+.++.++.|++..|+..+.... .
T Consensus 145 ~rG~iAiGwLiveDl~mVl~Lvll-pa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-G 222 (408)
T COG4651 145 QRGRIAIGWLIVEDLAMVLALVLL-PALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-G 222 (408)
T ss_pred cCceEEEeehhHHHHHHHHHHHHh-HHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 999999999999999988777766 55443211111 1 11234666888899999999999999999885322 2
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccch
Q 004016 281 LKQDHLVALNVIVLVVAL-VGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF 359 (779)
Q Consensus 281 ~~e~~~~~il~~~l~~~~-~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~ 359 (779)
.+|.+...++++++..++ .++.+|.++.+|||++|+++.+.. ..++..+..-++ .+.|.-+||+.+||.+|+..+..
T Consensus 223 srElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~ese-lshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~ 300 (408)
T COG4651 223 SRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESE-LSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQ 300 (408)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchh-hhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhc
Confidence 368888889999998776 578999999999999999999873 666666655554 88899999999999999987765
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh
Q 004016 360 NHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAI 439 (779)
Q Consensus 360 ~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i 439 (779)
+.+.. .....+...+|-+..+...+.++.|.|.++.++..+.+.|+++++++..+.+.+++++.--..++...++ +++
T Consensus 301 ~pl~v-latllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sIl 378 (408)
T COG4651 301 QPLAV-LATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SIL 378 (408)
T ss_pred chHHH-HHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HHH
Confidence 54543 3333445678999999999999999999999999999999999999999999999996655555555555 666
Q ss_pred HHHHHHHhhc
Q 004016 440 IIPLVKLVYD 449 (779)
Q Consensus 440 ~~plv~~l~~ 449 (779)
..|+.....+
T Consensus 379 ~nPllf~~~d 388 (408)
T COG4651 379 LNPLLFALLD 388 (408)
T ss_pred HhHHHHHHHH
Confidence 6666554443
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=2.7e-26 Score=264.66 Aligned_cols=354 Identities=12% Similarity=0.086 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhc
Q 004016 52 VFLPMLLVTILTYAIQLLLK-PFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSAR 130 (779)
Q Consensus 52 ~l~~l~lil~~~~l~~~ll~-rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle 130 (779)
..+.++..+++..++..+++ |+.+|..+.++++|+++||.++|.++... + .......++ ++++++++.+|.+|++
T Consensus 14 ~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~--g~~d~i~le-IteIvL~I~LFa~Gl~ 89 (810)
T TIGR00844 14 AYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-W--GNTDSITLE-ISRILLCLQVFAVSVE 89 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-c--ccchHHHHH-HHHHHHHHHHHHHHHh
Confidence 44445555555555566666 99999999999999999999988753110 0 001223444 9999999999999999
Q ss_pred cChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHH---HcCccCCh
Q 004016 131 IDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLT---ELKLLNSE 207 (779)
Q Consensus 131 ~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~---el~l~~s~ 207 (779)
++.+.+++.++.++.+++.++.+.+++++++++++...+ .|..++++|+++++|++.....+++ ..+ ++.+
T Consensus 90 L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL-----~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~r 163 (810)
T TIGR00844 90 LPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL-----NFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGH 163 (810)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChH
Confidence 999999999999999999999999988888887774333 3789999999999999776667766 223 5788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccc-h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004016 208 IGRLALSSSLLSSLIGWFAPTFYIYASEN-ALVGIT-R-----RTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKP 280 (779)
Q Consensus 208 ~g~l~ls~a~i~D~~~~ill~~~~~~~~~-~~~~~~-~-----~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~ 280 (779)
+..++.+++.+||.++++++.+. ..+.. ...+.. . ...+|.++..++++++++++.++++.|+.+|...
T Consensus 164 LR~lL~~ESGlNDGlAfpfv~La-L~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i--- 239 (810)
T TIGR00844 164 LRNLLSCESGCNDGLAFPFVFLS-MDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNII--- 239 (810)
T ss_pred HHhHHhhhhhcccHHHHHHHHHH-HHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---
Confidence 99999999999999999776655 33331 101111 1 1233455555555556666666666666555332
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhH-HHHHHHHHHHHhhHHHHHHHhcccccccccch
Q 004016 281 LKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSL-LADKIQYFVWVAFIPCFIINTGRRVDLYSIQF 359 (779)
Q Consensus 281 ~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~-l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~ 359 (779)
..+.+..+.++++++++.+++.+|.++++++|++|+++.+.....+. -...+......++..++|+++|+.+....+..
T Consensus 240 ~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~ 319 (810)
T TIGR00844 240 DRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNN 319 (810)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhccc
Confidence 13456677788888889999999999999999999999986533322 22335556678889999999999998766532
Q ss_pred -----hhHHHHHHHHHHHHHhhHHHHHHHHHhc--CCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCC
Q 004016 360 -----NHFLAVEMVILIAGTVKTFAIVIPCLYS--KIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQ 420 (779)
Q Consensus 360 -----~~~~~~~~iiv~~~~~K~~~~~l~~~~~--~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~ 420 (779)
..|..+++.+++.++.|+.++++...+. ..+++|++++|| .++||..++.++.++++.+.
T Consensus 320 ~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 320 GDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 3455556666666778988888764443 468999999999 79999999999999988765
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=1.6e-26 Score=265.97 Aligned_cols=367 Identities=11% Similarity=0.034 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCC-cchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHH
Q 004016 58 LVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSR-NQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIV 136 (779)
Q Consensus 58 lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~-~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l 136 (779)
.+++++.....+++|+++|.+++++++|+++||..++. .+ + ++ +.+..+++.+++|..|+++|.+.+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~------~--~~----~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVP------L--DR----EIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCC------C--CH----HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34445556678899999999999999999999865432 11 1 11 234458999999999999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHHHHHHHH
Q 004016 137 KKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGRLALSSS 216 (779)
Q Consensus 137 ~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a 216 (779)
|++++.+..+++.++++|++++....+++.. + +|..++++|+++|+||++++.+++++.+ .++++.+++.+++
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~-l-----~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES 145 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWILG-I-----PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-----cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence 9999999999999999999887666655432 2 4789999999999999999999999988 5789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 004016 217 LLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHLVALNVIVLVV 296 (779)
Q Consensus 217 ~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~ 296 (779)
++||..+++++.+. ..+..+.+..+.......++..++..+++++++..+..|+.++..+. +.....+++++++++
T Consensus 146 llND~~alvlf~~~-~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~ 221 (525)
T TIGR00831 146 LLNDGAALVVFAIA-VAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAG 221 (525)
T ss_pred hhcchHHHHHHHHH-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHH
Confidence 99999999999887 55553211222222333333333444455555556666666553322 345677888999999
Q ss_pred HHHHHHhcchhhHHHHHHHhhcCCCCCc---hhH---HHHHHHHHHHHhhHHHHHHHhccccccccc--ch-h--hH---
Q 004016 297 ALVGELTGQNSYLGPFILGITTPVTPPM---GSL---LADKIQYFVWVAFIPCFIINTGRRVDLYSI--QF-N--HF--- 362 (779)
Q Consensus 297 ~~~se~lg~~~~lGaflaGL~l~~~~p~---~~~---l~~kl~~~~~~lflPlFF~~~G~~~d~~~l--~~-~--~~--- 362 (779)
++++|.+|.|+++++|++|+++++..+. ... -.+.+......++.+++|+++|+++..... .. . .+
T Consensus 222 y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~ 301 (525)
T TIGR00831 222 FLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAV 301 (525)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence 9999999999999999999999986433 111 233444556788999999999999863111 10 0 01
Q ss_pred HH-----HHHHHHHHHHhhHHHHHHH--HHh-----cCCChHHHHHHHHHhhhhhhhHHHHHHhhhh---cC-------C
Q 004016 363 LA-----VEMVILIAGTVKTFAIVIP--CLY-----SKIPFMDALALGLLLNCRGIYDIQVFTRAKQ---RL-------Q 420 (779)
Q Consensus 363 ~~-----~~~iiv~~~~~K~~~~~l~--~~~-----~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~---~~-------~ 420 (779)
.. .+++.......|++..+.. .++ .++++|+.+.++| .+.||.++++++..-.. .| .
T Consensus 302 ~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~ 380 (525)
T TIGR00831 302 ILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYE 380 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHH
Confidence 00 1111122233455443322 111 2578999999999 69999999998864321 11 1
Q ss_pred CChhHHHHHHHHHHHHHHhHHHHHHHhh
Q 004016 421 ITDESFAIMVITAMFQSAIIIPLVKLVY 448 (779)
Q Consensus 421 i~~~~f~~lv~~~ll~t~i~~plv~~l~ 448 (779)
+-.-++.++++++++.+...||+++++-
T Consensus 381 i~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 381 LVFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 2223566777888888888888888764
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.2e-23 Score=228.92 Aligned_cols=380 Identities=13% Similarity=0.148 Sum_probs=292.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhc
Q 004016 51 VVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSAR 130 (779)
Q Consensus 51 ~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle 130 (779)
..++++.+++++..+...+.+|+..|.+..+++.|++.||.+++..+. .....-+.+-.+.+..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 456778888888999999999999999999999999999988877531 112222334489999999999999
Q ss_pred cChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHH
Q 004016 131 IDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGR 210 (779)
Q Consensus 131 ~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 210 (779)
+|.+.+|++++....+++.+++++.+......+++.+.. ++..++.+|+++|+|++.++.++.++.+ .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i-----~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGI-----PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 999999999999999999999999887666666664322 4689999999999999999999999977 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 004016 211 LALSSSLLSSLIGWFAPTFYIYASENALVGITRRT----VFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHL 286 (779)
Q Consensus 211 l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~ 286 (779)
+..+++++||..+++++.+. .....+.+..+... .++..+..++.+++.+++.+++.+++.+|.. .+ ...+.
T Consensus 152 iL~gESl~ND~~giv~f~~~-l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~--~~-~~~~~ 227 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVA-LAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGW--TS-PLLET 227 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHH-HHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cc-hHHHH
Confidence 99999999999999999888 55443212222122 2344444455555566666666666655531 11 45677
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcC---C--CCCch-hHHHHHHHHHHHHhhHHHHHHHhcccccccccchh
Q 004016 287 VALNVIVLVVALVGELTGQNSYLGPFILGITTP---V--TPPMG-SLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFN 360 (779)
Q Consensus 287 ~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~---~--~~p~~-~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~ 360 (779)
.+.+...+..+.++|.+|.+++++.+++|+... . ..+.. +...+.+.+....++.-+.|++.|++++...+...
T Consensus 228 ~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~ 307 (429)
T COG0025 228 LLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL 307 (429)
T ss_pred HHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 889999999999999999999999999999774 1 11212 23344455666888999999999999998777654
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhcC------CChHHHHHHHHHhhhhhhhHHHHHHhhhhcC------CCChhHHHH
Q 004016 361 HFLAVEMVILIAGTVKTFAIVIPCLYSK------IPFMDALALGLLLNCRGIYDIQVFTRAKQRL------QITDESFAI 428 (779)
Q Consensus 361 ~~~~~~~iiv~~~~~K~~~~~l~~~~~~------~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~------~i~~~~f~~ 428 (779)
.+...++.++..+++|++++++..+..+ .+++|++.++| -++||.++++++....... .+-.-++.+
T Consensus 308 ~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~v 386 (429)
T COG0025 308 GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLV 386 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHH
Confidence 4666677777888899999999988743 79999999999 6999999999998755321 223346677
Q ss_pred HHHHHHHHHHhHHHHHHHhhc
Q 004016 429 MVITAMFQSAIIIPLVKLVYD 449 (779)
Q Consensus 429 lv~~~ll~t~i~~plv~~l~~ 449 (779)
++.++++.+...+|+.++...
T Consensus 387 Il~Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 387 ILFSLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHHHHHhhhHHHHHHHhcc
Confidence 777777777778888877654
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-22 Score=215.00 Aligned_cols=371 Identities=10% Similarity=0.035 Sum_probs=298.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHH
Q 004016 48 PIMVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTL 127 (779)
Q Consensus 48 ~l~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~ 127 (779)
+...+++.-.+++.++.+.+.+..|+|.|..+-.+..|++.|--++|.++ | ++...-..++++++++++|..
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~------f--dNy~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE------F--DNYPFAYMVGNLALAIILFDG 75 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc------c--CccHHHHHHHHHHHHHHhhcC
Confidence 34445555557778888899999999999999999999999999999875 2 456677889999999999999
Q ss_pred hhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCCh
Q 004016 128 SARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSE 207 (779)
Q Consensus 128 Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~ 207 (779)
|+.+.++..|...++++.++..|++++-.+...+++++.+. .|.+++++|+++..|+.+.+..+|.+.+ +|.+
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~er 148 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNER 148 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhh
Confidence 99999999999999999999999999987766666666543 4899999999999999999999998888 5899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 004016 208 IGRLALSSSLLSSLIGWFAPTFYIYASENALVG-ITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHL 286 (779)
Q Consensus 208 ~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~ 286 (779)
.+.+..-++--||.+++++.... +.+.....+ .+. ..+..++.-.++.++.++....+..|+++|+.-+ +..|.
T Consensus 149 v~stLEiESGtNDPmAvfLTitl-ieli~~get~l~~-~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~p 223 (574)
T COG3263 149 VASTLEIESGSNDPMAVFLTITL-IELIAGGETNLSW-GFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYP 223 (574)
T ss_pred hhhhEEeecCCCCceeeehhHHH-HHHHhccccccCH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhH
Confidence 99999999999999999886655 443333112 121 2223355666777788888889999999997432 45788
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHH
Q 004016 287 VALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPM-GSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAV 365 (779)
Q Consensus 287 ~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~-~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~ 365 (779)
.+++...++.+.+++.+|.++++..+++|+.+.|.+-. ++.+.+..+-+ .++..-+.|...|+.+.++++.......+
T Consensus 224 il~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~iavPai 302 (574)
T COG3263 224 ILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPIAIPAI 302 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHhhHHHH
Confidence 89999999999999999999999999999999998533 34455556665 67888888999999999988876556656
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhH
Q 004016 366 EMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDE-SFAIMVITAMFQSAII 440 (779)
Q Consensus 366 ~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~-~f~~lv~~~ll~t~i~ 440 (779)
++.+.+.+++|.+++++...-+|.+++|.++++| -+-||.++++++....-.|.-+.+ .|++..+.++++-.+.
T Consensus 303 lL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQ 377 (574)
T COG3263 303 LLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQ 377 (574)
T ss_pred HHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHc
Confidence 6777778889999999999889999999999999 699999999999998777765543 3444444444443333
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.90 E-value=2.1e-21 Score=223.45 Aligned_cols=365 Identities=13% Similarity=0.051 Sum_probs=252.5
Q ss_pred HHhhh-CCchhHHHHHHHHhcCccccCC--cchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHH
Q 004016 69 LLKPF-GEAAFASQLLGGIALGPSLLSR--NQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIV 145 (779)
Q Consensus 69 ll~rl-~~P~iv~~IlaGiilGP~~lg~--~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ 145 (779)
.-|+. ++|..+..++.|+++|+...+. .+. .-+ .-+.+-.+.+-.++|..|.++|.+.++++.+.++.
T Consensus 28 ~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~---~~l------~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~ 98 (559)
T TIGR00840 28 THKVIRAVPESVLLIVYGLLVGGIIKASPHIDP---PTL------DSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILI 98 (559)
T ss_pred HHhhcccCCHHHHHHHHHHHHHHHHHcCCCCcc---CCc------CHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444 4999999999999999864332 111 011 11445556788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCc--cchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHH
Q 004016 146 IGVGAFIIPLIVSILTTLFIRDGLE--LDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGRLALSSSLLSSLIG 223 (779)
Q Consensus 146 ia~~~~l~p~~~g~~~~~~l~~~~~--~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~ 223 (779)
+|+.|++++.++.....+++..... ...-+|..++++|+++|+|++.++..++++.+ .+.++-.++.++|++||.++
T Consensus 99 lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDava 177 (559)
T TIGR00840 99 FAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVT 177 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHH
Confidence 9999999998766555554332111 11124789999999999999999999999999 58999999999999999999
Q ss_pred HHHHHHHHHHHhhcc-cccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 004016 224 WFAPTFYIYASENAL-VGITRRT---VFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALV 299 (779)
Q Consensus 224 ~ill~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~ 299 (779)
++++.++ ....... ++.+... ....+....+..+++++++..+..++.|+.... +..+..+++++.++++.+
T Consensus 178 IVLf~~~-~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~~~yl~Y~l 253 (559)
T TIGR00840 178 VVLYNTF-IKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFLISYLSYLF 253 (559)
T ss_pred HHHHHHH-HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHH
Confidence 9999877 5544310 1111111 111111112224555566666677777776432 235667788889999999
Q ss_pred HHHhcchhhHHHHHHHhhcCCC-----CCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHH
Q 004016 300 GELTGQNSYLGPFILGITTPVT-----PPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGT 374 (779)
Q Consensus 300 se~lg~~~~lGaflaGL~l~~~-----~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~ 374 (779)
+|.+|.+++++.+++|+++.+. .+..+.-.+.+......+...+.|++.|+.+-...-.+ .|...++.+++.++
T Consensus 254 AE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~-~~~~i~~~l~~~ll 332 (559)
T TIGR00840 254 AETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEW-NWAFVVATLSFCVI 332 (559)
T ss_pred HHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHH
Confidence 9999999999999999999642 22122223344455577888999999999763221112 24333444455567
Q ss_pred hhHHHHHHHHHh------cCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCC-----hhHHHHHHHHHHHHHHhHHHH
Q 004016 375 VKTFAIVIPCLY------SKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQIT-----DESFAIMVITAMFQSAIIIPL 443 (779)
Q Consensus 375 ~K~~~~~l~~~~------~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~-----~~~f~~lv~~~ll~t~i~~pl 443 (779)
.|+++.+...+. .+++++|.+.+++ .+.||.++++++....+.+.-. ..++.++++++++....++|+
T Consensus 333 ~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl 411 (559)
T TIGR00840 333 YRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPL 411 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhhHHHH
Confidence 888888766543 3589999999999 6999999999887643322222 234445556667767777899
Q ss_pred HHHhhc
Q 004016 444 VKLVYD 449 (779)
Q Consensus 444 v~~l~~ 449 (779)
++++.-
T Consensus 412 ~~~L~l 417 (559)
T TIGR00840 412 VEVLKV 417 (559)
T ss_pred HHHhCC
Confidence 888753
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.74 E-value=3.6e-15 Score=163.24 Aligned_cols=299 Identities=13% Similarity=0.178 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHhhccChhH-------HHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHH
Q 004016 113 NVIECVGLIFMFFTLSARIDKGI-------VKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATL 185 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~-------l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ 185 (779)
..+-+.=+.++.|.+|+|+.-+. .||..- ...-++.|+++|.++ ++.+....+ ...--+ .+
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~l-P~~aAlGGm~vPali----y~~~n~~~~------~~~~GW-~I 131 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAAL-PVAAALGGMIVPALI----YVAVNLAGG------GALRGW-AI 131 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHH-HHHHHHHhHHHHHHH----HHHHhCCch------hhhhhh-hh
Confidence 34445556778999999995543 333322 245677888888763 333332111 001111 44
Q ss_pred HhhhhHHHHHHHHHHcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Q 004016 186 EATISFHVILANLTELKL-LNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVV 264 (779)
Q Consensus 186 ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 264 (779)
-+.|+.+....+|..+|. .+++++...++.|++||+.+++++++. . + ++.+ ..+.......+ +++
T Consensus 132 p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlf-Y----t-~~i~---~~~L~~a~~~~--~~l--- 197 (423)
T PRK14853 132 PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVF-Y----T-SELN---LEALLLALVPL--ALF--- 197 (423)
T ss_pred hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhec-c----C-CCCC---HHHHHHHHHHH--HHH---
Confidence 567899999999999875 488999999999999999999998877 4 1 1222 22222221111 111
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCC-----------CchhHHHHHHH
Q 004016 265 RPIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTP-----------PMGSLLADKIQ 333 (779)
Q Consensus 265 r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~-----------p~~~~l~~kl~ 333 (779)
|+.+|. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..++++++++
T Consensus 198 -----~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~ 266 (423)
T PRK14853 198 -----WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLR 266 (423)
T ss_pred -----HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHH
Confidence 222332 234455565553 36677889999999999999999999521 23578999999
Q ss_pred HHHHHhhHHHH-HHHhcccccc-ccc-chhhHHHHHHHHHHHHHhhHHHHHHHHHhc----------CCChHHHHHHHHH
Q 004016 334 YFVWVAFIPCF-IINTGRRVDL-YSI-QFNHFLAVEMVILIAGTVKTFAIVIPCLYS----------KIPFMDALALGLL 400 (779)
Q Consensus 334 ~~~~~lflPlF-F~~~G~~~d~-~~l-~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~ 400 (779)
+++..+++|+| |+..|.++|. ..+ ....-.....+++..+++|.+|.+..++.. +++|++-..+|++
T Consensus 267 p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L 346 (423)
T PRK14853 267 PLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALL 346 (423)
T ss_pred HHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 99999999999 9999999986 434 211111345566677889999987776554 4788999999887
Q ss_pred hhhhhhhHHHHHHhhhh-cCCCChhHHHHHHHHHHHHHHhHHHHHHHhh
Q 004016 401 LNCRGIYDIQVFTRAKQ-RLQITDESFAIMVITAMFQSAIIIPLVKLVY 448 (779)
Q Consensus 401 l~~kG~~~l~~~~~~~~-~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~ 448 (779)
-+.-=.+++.+++.+++ .....++.--.+.+.++++..+..-+++...
T Consensus 347 ~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~ 395 (423)
T PRK14853 347 AGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRN 395 (423)
T ss_pred HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666788999999884 2222333344455555554544444454433
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.69 E-value=9.3e-15 Score=150.07 Aligned_cols=359 Identities=13% Similarity=0.071 Sum_probs=247.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHH
Q 004016 45 SHFPIMVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMF 124 (779)
Q Consensus 45 l~~~l~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~ll 124 (779)
++..--.+...-+.+.+.+..--.+=+++-+...+--.+.|+++||+++++.+... . .+.+....-++.+-+..-.
T Consensus 8 idkvh~al~~~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~---w-gn~d~it~ei~RvvLcvqv 83 (467)
T KOG4505|consen 8 IDKVHLALAASGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS---W-GNKDYITYEISRVVLCVQV 83 (467)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc---c-cCcchhhhhhhhhhHhHHH
Confidence 33333333333334444444434444556666666677899999999998853211 0 1223455667888888899
Q ss_pred HHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCc-
Q 004016 125 FTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKL- 203 (779)
Q Consensus 125 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l- 203 (779)
|.++.|+.-+.+.++++..+++-..-+++-+++.+++.|.+.+.. ....++.++++++.|++.....+..+-+.
T Consensus 84 fava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~l-----nf~~Sl~iaaCiTaTDPiLsssIV~~g~~a 158 (467)
T KOG4505|consen 84 FAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNL-----NFLTSLLIAACITATDPILSSSIVGGGKFA 158 (467)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHccCCchhHHHHHhcCchHh
Confidence 999999999999999998887755555555666666666666544 35789999999999996555566665443
Q ss_pred --cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004016 204 --LNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITR------RTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKT 275 (779)
Q Consensus 204 --~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~ 275 (779)
...++..+..+++-.||.+++.++-+. .-+...+..... ...++.....++++.+++++.|..++...++.
T Consensus 159 krvPeriR~lL~AESGcNDGMaipflfla-i~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkr 237 (467)
T KOG4505|consen 159 KRVPERIRNLLAAESGCNDGMAIPFLFLA-IDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKR 237 (467)
T ss_pred hhChHHHHHHHHHhcCCCCCcchhHHHHH-HHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778889999999999999888777 433322111110 12334444455566777778777777666664
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHH-HHHHHHHHHHhhHHHHHHHhcccccc
Q 004016 276 PEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLL-ADKIQYFVWVAFIPCFIINTGRRVDL 354 (779)
Q Consensus 276 ~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l-~~kl~~~~~~lflPlFF~~~G~~~d~ 354 (779)
--+ .|++..+-+++.+.++.+.+.+|.+-.+-.|.||.+++...-+..+. ..++..+...++--.||.+.|..++.
T Consensus 238 lid---~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipw 314 (467)
T KOG4505|consen 238 LID---RESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPW 314 (467)
T ss_pred ccc---HHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccch
Confidence 332 57888899999999999999999999999999999999886555544 34667777778888999999999999
Q ss_pred cccchh-----hHHHHHHHHHHHHHhhHHHHHHHHHhc--CCChHHHHHHHHHhhhhhhhHHHHHHhhhh
Q 004016 355 YSIQFN-----HFLAVEMVILIAGTVKTFAIVIPCLYS--KIPFMDALALGLLLNCRGIYDIQVFTRAKQ 417 (779)
Q Consensus 355 ~~l~~~-----~~~~~~~iiv~~~~~K~~~~~l~~~~~--~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~ 417 (779)
+.+++. .|-.+++-+.+.+.-|+.++++.-.+- =.+|||++++|. .+|.|.-++..+..+..
T Consensus 315 sqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 315 SQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred hhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 888642 343333333333444555555432221 147999999999 79999998888877654
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.66 E-value=6.9e-15 Score=163.42 Aligned_cols=381 Identities=12% Similarity=0.064 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHhhhC---CchhHHHHHHHHhcCccccCCcchh-----hhhcCCccchHHHHHHHHHHHHHHHHHHh
Q 004016 57 LLVTILTYAIQLLLKPFG---EAAFASQLLGGIALGPSLLSRNQEL-----KELVFPPKAVMAINVIECVGLIFMFFTLS 128 (779)
Q Consensus 57 ~lil~~~~l~~~ll~rl~---~P~iv~~IlaGiilGP~~lg~~~~~-----~~~~fp~~~~~~l~~l~~lGl~~llF~~G 128 (779)
.+++.++.+..+++++-| +|.-+.-++.|+++|-......... ..+.|.+ +.+-.+=+--+.|..|
T Consensus 41 i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpiif~sg 114 (575)
T KOG1965|consen 41 ILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPIIFNSG 114 (575)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhhhccc
Confidence 334555777889999988 9999999999999984321111100 0111211 1122222344789999
Q ss_pred hccChhHHHhcchhHHHHHHHHHHHHH-HHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCCh
Q 004016 129 ARIDKGIVKKSGKLAIVIGVGAFIIPL-IVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSE 207 (779)
Q Consensus 129 le~d~~~l~~~~~~~~~ia~~~~l~p~-~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~ 207 (779)
.+++.+.++++......+++.|..+.. ++|.++.++.. ......-.+..++++|+++|.|++..+..+++|++ ....
T Consensus 115 y~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-vd~~ 192 (575)
T KOG1965|consen 115 YSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-VDPK 192 (575)
T ss_pred ceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-CCcc
Confidence 999999999999999999999887774 45555444432 22222234799999999999999999999999999 5778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 004016 208 IGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRT---VFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQD 284 (779)
Q Consensus 208 ~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~ 284 (779)
+-.++-+++++||.++++++..+ ...... +.+... .+..++.....-..++...+.+...+.|+..-++ ....
T Consensus 193 Ly~LVFGESvLNDAvsIVlf~~i-~~~~~~--~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~-~~~l 268 (575)
T KOG1965|consen 193 LYTLVFGESVLNDAVSIVLFNTI-QKFQLG--SLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRR-TPSL 268 (575)
T ss_pred eeeeeecchhccchhHHHHHHHH-HHHccC--CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHH
Confidence 89999999999999999999877 554432 221111 2222222222222222222323333333332221 2456
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCC-----CCchhHHHHHHHHHHHHhhHHHHHHHhcc-cccccccc
Q 004016 285 HLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVT-----PPMGSLLADKIQYFVWVAFIPCFIINTGR-RVDLYSIQ 358 (779)
Q Consensus 285 ~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~-----~p~~~~l~~kl~~~~~~lflPlFF~~~G~-~~d~~~l~ 358 (779)
+..+.+++....++++|.+|+++++..++.|+.+++. .+..+.-.+++-.+...+---+-|+++|+ -++.....
T Consensus 269 E~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~ 348 (575)
T KOG1965|consen 269 ESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHV 348 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccee
Confidence 7888999999999999999999999999999999864 22233334444444566667778999996 33444443
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHhc------C----CChHHHHHHHHHhhhhhhhHHHHHHhhhhc------CCCC
Q 004016 359 FNHFLAVEMVILIAGTVKTFAIVIPCLYS------K----IPFMDALALGLLLNCRGIYDIQVFTRAKQR------LQIT 422 (779)
Q Consensus 359 ~~~~~~~~~iiv~~~~~K~~~~~l~~~~~------~----~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~------~~i~ 422 (779)
+.....+....++.+++|..-.+-.+.+. + +|.++-..++|.-.-||.++++++..-... +.+-
T Consensus 349 ~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i~ 428 (575)
T KOG1965|consen 349 YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTIF 428 (575)
T ss_pred eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEEE
Confidence 33222334444555667766554444433 2 455666777776558999999988652111 2333
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhhc
Q 004016 423 DESFAIMVITAMFQSAIIIPLVKLVYD 449 (779)
Q Consensus 423 ~~~f~~lv~~~ll~t~i~~plv~~l~~ 449 (779)
..+..++++++++-...+.|+++++-.
T Consensus 429 tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 429 TTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred EeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 345555666666777788999998753
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.50 E-value=7.3e-12 Score=134.87 Aligned_cols=269 Identities=16% Similarity=0.202 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHH---hcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHH
Q 004016 113 NVIECVGLIFMFFTLSARIDKGIVK---KSGKL---AIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLE 186 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~l~---~~~~~---~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l 186 (779)
..+.+.=+.++.|.+|+|+.-+.+. ++.|| ...-++.|+++|.++ +..+....+.....| | +=
T Consensus 54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~i----y~~~n~~~~~~~~GW------~-IP 122 (373)
T TIGR00773 54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALI----YLAFNANDPITREGW------A-IP 122 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HhheecCCCcccCcc------c-cc
Confidence 3444555677899999999887763 22233 344566677777653 223322111001112 1 12
Q ss_pred hhhhHHHHHHHHHHcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 004016 187 ATISFHVILANLTELK-LLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVR 265 (779)
Q Consensus 187 s~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 265 (779)
..|+.+-...++.=+| ..+..+....++-|++||+.++++.++. .. ++. ...+......++.+
T Consensus 123 ~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~F-Yt-----~~i---~~~~L~~a~~~~~~------- 186 (373)
T TIGR00773 123 AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALF-YT-----NDL---SMAALLVAAVAIAV------- 186 (373)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeee-cC-----CCC---CHHHHHHHHHHHHH-------
Confidence 2344444444444443 2566678889999999999999887766 31 121 22233332221111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCch----hHHHHHHHHHHHHhhH
Q 004016 266 PIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMG----SLLADKIQYFVWVAFI 341 (779)
Q Consensus 266 ~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~----~~l~~kl~~~~~~lfl 341 (779)
.++.+|.. +++...+.++.. ++.+.+ ...|+|+.+|+|++|+++|...+.. +++++.+++.+..+++
T Consensus 187 ---l~~~~~~~----v~~~~~y~~lgv-llW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lil 257 (373)
T TIGR00773 187 ---LAVLNRCG----VRRLGPYMLVGV-ILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLIL 257 (373)
T ss_pred ---HHHHHHcC----CchhhHHHHHHH-HHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 12333321 233444444433 333333 7999999999999999999864443 3455556666889999
Q ss_pred HHH-HHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhhHHH
Q 004016 342 PCF-IINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYS----------KIPFMDALALGLLLNCRGIYDIQ 410 (779)
Q Consensus 342 PlF-F~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~l~~kG~~~l~ 410 (779)
|+| |+..|.++|...+..........+++..+++|.+|++..++.. +++|++-..+|++-+.-=.+++.
T Consensus 258 PlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlf 337 (373)
T TIGR00773 258 PLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIF 337 (373)
T ss_pred HHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999987555432223356677777899999998887654 46889988888876666678888
Q ss_pred HHHhhhh
Q 004016 411 VFTRAKQ 417 (779)
Q Consensus 411 ~~~~~~~ 417 (779)
+.+.+++
T Consensus 338 I~~LAf~ 344 (373)
T TIGR00773 338 IASLAFG 344 (373)
T ss_pred HHHHhcC
Confidence 8888884
No 20
>PRK11175 universal stress protein UspE; Provisional
Probab=99.42 E-value=2.9e-12 Score=138.60 Aligned_cols=270 Identities=12% Similarity=0.101 Sum_probs=162.6
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHH-HHHHHhcC
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAF-FRYQQTNK 550 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af-~~~~~~~~ 550 (779)
|||+|+...++....++.+-.++.. ...+++++|+++......+........+.......++.++.++.+ +.+. .
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~ 80 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQR-NGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYL---D 80 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHh-cCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHh---h
Confidence 6999999988888888887777654 334688899875432211110000000000000000112222222 2221 2
Q ss_pred cceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceEEEecCCCccccccccc
Q 004016 551 AYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIGLLYDRSLAIDYRSFQC 627 (779)
Q Consensus 551 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVgIlvdrg~~~~~~~~~~ 627 (779)
.+++++...... .+.++.|++.|+++++|+||+|+|+. .+..++++.+++++++||+|-+.-++.. .. . .
T Consensus 81 ~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~~~---~~-~-~ 153 (305)
T PRK11175 81 AGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQDW---PE-G-G 153 (305)
T ss_pred cCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccccc---CC-C-C
Confidence 356666544432 47799999999999999999999973 2456788889999999999888754321 12 2 4
Q ss_pred ceEEEeecCCcc-------HHHHHHHHHHHhcCC-CeEEEEEEEEecCCCC---------CCccchhhH---HHHHHHhh
Q 004016 628 RRVCVLFIGGAD-------DREALALGARMGRNP-SIHLTVTRFVVTNPTM---------SDFIDEDRD---QAMINDFR 687 (779)
Q Consensus 628 ~~i~v~f~GG~d-------dreAL~~a~rma~~~-~v~ltv~~~~~~~~~~---------~~~~e~~~d---~~~i~~~~ 687 (779)
+|+++.=+.++ +..|+.+|.++|+.. +.+++++|+.+..... .++.++... ++.++++.
T Consensus 154 -~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (305)
T PRK11175 154 -KILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALR 232 (305)
T ss_pred -eEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 89998887653 267999999999987 9999999998632110 011111111 12345554
Q ss_pred hhcCCCCCEEEEEEeecChHHHHHHHHhhh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCcee
Q 004016 688 FVNLDSKNVEYVEEGVEEGFETLRIINAIA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRAS 765 (779)
Q Consensus 688 ~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~S 765 (779)
++... ...+..+..|. ..+.|.+.+ .+.||+++|.++.. . +.+ -=+|-..+-++.. .+++
T Consensus 233 ~~~~~----~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~~--~----~~~----~llGS~a~~v~~~---~~~p 294 (305)
T PRK11175 233 QKFGI----DEEQTHVEEGL-PEEVIPDLAEHLDAELVILGTVGRT--G----LSA----AFLGNTAEHVIDH---LNCD 294 (305)
T ss_pred HHhCC----ChhheeeccCC-HHHHHHHHHHHhCCCEEEECCCccC--C----Ccc----eeecchHHHHHhc---CCCC
Confidence 43321 11122233332 223343332 38999999997542 1 111 1389999999998 8899
Q ss_pred EEEEee
Q 004016 766 VLVIQQ 771 (779)
Q Consensus 766 vLVvqq 771 (779)
||||..
T Consensus 295 VLvv~~ 300 (305)
T PRK11175 295 LLAIKP 300 (305)
T ss_pred EEEEcC
Confidence 999963
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.16 E-value=3.1e-08 Score=108.73 Aligned_cols=296 Identities=15% Similarity=0.149 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHH
Q 004016 112 INVIECVGLIFMFFTLSARIDKGIVK---KSGKL---AIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATL 185 (779)
Q Consensus 112 l~~l~~lGl~~llF~~Gle~d~~~l~---~~~~~---~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ 185 (779)
...+.+.=+.++.|.+|+|+.-+.+. ++.|| ...-|+.|+++|.++ ++.+.... +....| | +
T Consensus 69 ~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI----Y~~~n~~~-~~~~GW------g-I 136 (438)
T PRK14856 69 HNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI----YFFLNADT-PSQHGF------G-I 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH----HhheecCC-CccCcc------c-c
Confidence 34455556678899999999877653 22233 345566677777653 33333211 111112 2 2
Q ss_pred HhhhhHHHHHHHHHHcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Q 004016 186 EATISFHVILANLTELKL-LNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVV 264 (779)
Q Consensus 186 ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 264 (779)
=..|+.+-...++.=+|- .++.+....++-|++||+.++++.++. .. ++ ....+......++.+
T Consensus 137 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF-Yt-----~~---i~~~~L~~a~~~~~~------ 201 (438)
T PRK14856 137 PMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALF-YT-----TN---LKFAWLLGALGVVLV------ 201 (438)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee-cC-----CC---CcHHHHHHHHHHHHH------
Confidence 223555555555544442 456777889999999999999887766 31 12 123333333322221
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCc--------------------
Q 004016 265 RPIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPM-------------------- 324 (779)
Q Consensus 265 r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~-------------------- 324 (779)
.++.+|.. ++....++++.+++..+. ..-|+|+.++..++|+++|..++.
T Consensus 202 ----l~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 202 ----LAVLNRLN----VRSLIPYLLLGVLLWFCV--HQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred ----HHHHHHcC----CccccHHHHHHHHHHHHH--HHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 12223321 233444555554443333 478999999999999999974322
Q ss_pred ------------------------hhHHHHHHHHHHHHhhHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHhhHHH
Q 004016 325 ------------------------GSLLADKIQYFVWVAFIPCF-IINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFA 379 (779)
Q Consensus 325 ------------------------~~~l~~kl~~~~~~lflPlF-F~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~ 379 (779)
.+++++.+++.+..+.+|+| |+..|..++....... -.+...+++-.++||.+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~-~pv~lGI~~GLvvGK~lG 350 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEV-DKVLLGVILGLCLGKPLG 350 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhcc-CcHHHHHHHHHHhcchHH
Confidence 13456667777888999999 8999999985422111 112334445556799998
Q ss_pred HHHHHHhc----------CCChHHHHHHHHHhhhhhhhHHHHHHhhhhc--CCCChhHHHHHHHHHHHHHHhHHHHHH
Q 004016 380 IVIPCLYS----------KIPFMDALALGLLLNCRGIYDIQVFTRAKQR--LQITDESFAIMVITAMFQSAIIIPLVK 445 (779)
Q Consensus 380 ~~l~~~~~----------~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~--~~i~~~~f~~lv~~~ll~t~i~~plv~ 445 (779)
.+..+++. +++|++-..+|++-+.-=.+++.+++.+++. ....++.--.+.+.++++..+..-+++
T Consensus 351 I~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~ 428 (438)
T PRK14856 351 IFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLF 428 (438)
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776554 4688998888886666667888888888843 223333444445555554444444444
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.12 E-value=2.6e-08 Score=107.74 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHH---hcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHH
Q 004016 113 NVIECVGLIFMFFTLSARIDKGIVK---KSGKL---AIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLE 186 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~l~---~~~~~---~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l 186 (779)
..+.+.=+.++.|.+|+|+.-+.+. ++.|| ...-|+.|+++|.++ ++.+....+.....| | +=
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlI----y~~~n~g~~~~~~GW------g-IP 129 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALI----YAAFNYNNPETLRGW------A-IP 129 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HheeecCCCcccCcc------c-cc
Confidence 3344555667899999999887663 22233 345566777777653 223322111001112 1 12
Q ss_pred hhhhHHHHHHHHHHcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 004016 187 ATISFHVILANLTELK-LLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVR 265 (779)
Q Consensus 187 s~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 265 (779)
..|+.+-...+++=+| ..+..+....++-|++||+.++++.++. .. ++. ...+......++.+ .
T Consensus 130 mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~F-Yt-----~~i---~~~~L~~a~~~~~~--l---- 194 (389)
T PRK09560 130 AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALF-YT-----SDL---SLPALALAAIAIAV--L---- 194 (389)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee-cC-----CCC---CHHHHHHHHHHHHH--H----
Confidence 2345555555555443 2456678889999999999999887766 31 122 23333333222211 1
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCc------hhHHHHHHHHHHHHh
Q 004016 266 PIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPM------GSLLADKIQYFVWVA 339 (779)
Q Consensus 266 ~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~------~~~l~~kl~~~~~~l 339 (779)
++.+|.. ++....+.++.+++..+. ..-|+|+.++..++|+++|..++. .+++++++++.+..+
T Consensus 195 ----~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~ 264 (389)
T PRK09560 195 ----FLLNRLG----VTKLTPYLIVGAILWFAV--LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFA 264 (389)
T ss_pred ----HHHHHcC----CccchHHHHHHHHHHHHH--HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhh
Confidence 2223321 233445555554444333 478999999999999999975322 356888889998888
Q ss_pred hHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhhH
Q 004016 340 FIPCF-IINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYS----------KIPFMDALALGLLLNCRGIYD 408 (779)
Q Consensus 340 flPlF-F~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~l~~kG~~~ 408 (779)
.+|+| |+..|..++-..+....-.....+++-.+++|.+|.+..+++. +++|++-..+|.+-+.-=.++
T Consensus 265 IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmS 344 (389)
T PRK09560 265 ILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMS 344 (389)
T ss_pred hHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999 8899998853223211111233444555679999888776544 468899888888766666788
Q ss_pred HHHHHhhhh
Q 004016 409 IQVFTRAKQ 417 (779)
Q Consensus 409 l~~~~~~~~ 417 (779)
+.+++.++.
T Consensus 345 LFIa~LAF~ 353 (389)
T PRK09560 345 LFIGSLAFG 353 (389)
T ss_pred HHHHHhhcC
Confidence 888888883
No 23
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.10 E-value=5.1e-10 Score=104.87 Aligned_cols=128 Identities=22% Similarity=0.313 Sum_probs=99.4
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcCc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNKA 551 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 551 (779)
|||+|+.+.++...+++.+..++.. .+.+++++|+++.+....+ +... ......++.++.+.+..+. .
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~-~~~~v~ll~v~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~--~ 68 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA-QNGEIIPLNVIEVPNHSSP----SQLE-----VNVQRARKLLRQAERIAAS--L 68 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc-CCCeEEEEEEEecCCCCCc----chhH-----HHHHHHHHHHHHHHHHhhh--c
Confidence 6999999999999999999999876 5678999999987654332 1100 0112345666666666543 4
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceEEE
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVgIl 613 (779)
++.+++....+ .+..++||+.|+++++|+|++|.|+. .+..+|++.++|++++||+|.|+
T Consensus 69 g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 69 GVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEe
Confidence 56778777776 47899999999999999999999983 25678999999999999998875
No 24
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.06 E-value=4.7e-08 Score=105.53 Aligned_cols=269 Identities=15% Similarity=0.206 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHH---hcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHH
Q 004016 113 NVIECVGLIFMFFTLSARIDKGIVK---KSGKL---AIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLE 186 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~l~---~~~~~---~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l 186 (779)
..+.+.=+.++.|.+|+|+.-+.+. ++.|| ...-++.|+++|.++ ++.+....+.....| .+=
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAli----y~~~n~~~~~~~~GW-------aIP 129 (388)
T PRK09561 61 LWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALI----YLLFNYADPVTREGW-------AIP 129 (388)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHH----HhheecCCCcccCcc-------ccc
Confidence 3344445667889999999887763 22233 344566677777653 323322110000112 122
Q ss_pred hhhhHHHHHHHHHHcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 004016 187 ATISFHVILANLTELK-LLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVR 265 (779)
Q Consensus 187 s~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 265 (779)
..|+.+-...++.=+| ..+..+....++-|++||+.++++.++. .. ++. .+.+......++.+ .
T Consensus 130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF-Yt-----~~i---~~~~L~~a~~~~~~--l---- 194 (388)
T PRK09561 130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALF-YT-----SDL---SMVSLGVAAVAIAV--L---- 194 (388)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee-cC-----CCc---cHHHHHHHHHHHHH--H----
Confidence 2345555555554443 2456678889999999999999887766 31 121 22232222221111 1
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHHHhhH
Q 004016 266 PIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPM----GSLLADKIQYFVWVAFI 341 (779)
Q Consensus 266 ~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~----~~~l~~kl~~~~~~lfl 341 (779)
++.+|.. ++....+.++..++..+. ..-|+|+.++..+.|+.+|...+. .+++++++++.+..+.+
T Consensus 195 ----~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~Il 264 (388)
T PRK09561 195 ----AVLNLCG----VRRTSVYILVGVVLWVAV--LKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLIL 264 (388)
T ss_pred ----HHHHHcC----CccchHHHHHHHHHHHHH--HHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeH
Confidence 2223321 234455555554444333 478999999999999999975322 35688889999999999
Q ss_pred HHH-HHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhhHHH
Q 004016 342 PCF-IINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYS----------KIPFMDALALGLLLNCRGIYDIQ 410 (779)
Q Consensus 342 PlF-F~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~l~~kG~~~l~ 410 (779)
|+| |+..|..++-..+....-.....+++-.++||.+|.+..+++. +++|++-..+|++-+.-=.+++.
T Consensus 265 PlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLF 344 (388)
T PRK09561 265 PLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIF 344 (388)
T ss_pred HHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 8889988842222211111233444555678999888776544 46889988888866666678888
Q ss_pred HHHhhhh
Q 004016 411 VFTRAKQ 417 (779)
Q Consensus 411 ~~~~~~~ 417 (779)
+++.+++
T Consensus 345 Ia~LAF~ 351 (388)
T PRK09561 345 IASLAFG 351 (388)
T ss_pred HHHHhcC
Confidence 8888884
No 25
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.04 E-value=7.8e-08 Score=103.53 Aligned_cols=270 Identities=11% Similarity=0.134 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHH---hcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHH
Q 004016 113 NVIECVGLIFMFFTLSARIDKGIVK---KSGKL---AIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLE 186 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~l~---~~~~~---~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l 186 (779)
+.+.+.=+.++.|.+|+|+.-+.+. ++.|| ...-++.|+++|.++ +..+... +.....| | +=
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlI----y~~~n~~-~~~~~GW------~-IP 125 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLI----YLSINHD-IKVINGW------A-IP 125 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HHhhccC-CcccCcc------c-cc
Confidence 3344445667889999999877653 22233 345566777888753 2233221 1101112 1 12
Q ss_pred hhhhHHHHHHHHHHcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 004016 187 ATISFHVILANLTELK-LLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVR 265 (779)
Q Consensus 187 s~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 265 (779)
..|+.+-...++.=+| ..+..+.-..++-|++||+.++++.++. . + ++. .+.+......++. +.++
T Consensus 126 ~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlF-Y----t-~~i---~~~~L~~A~~~~~--~l~~-- 192 (383)
T PRK14854 126 SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIF-Y----T-KSL---SLLSLSLGTLFIL--AMII-- 192 (383)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee-c----C-CCc---cHHHHHHHHHHHH--HHHH--
Confidence 2344444444444443 2456677788888999999999887766 3 1 121 1222222221111 1111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHHHhhH
Q 004016 266 PIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPM----GSLLADKIQYFVWVAFI 341 (779)
Q Consensus 266 ~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~----~~~l~~kl~~~~~~lfl 341 (779)
+.|+.. ++....++++..++..+ ...-|+|+.++..+.|+++|...+. .+++++++++.+..+.+
T Consensus 193 -----~nr~~~----v~~~~~Y~~~G~~lW~~--~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~Il 261 (383)
T PRK14854 193 -----CNRIFK----INRSSVYVVLGFFAWFC--TIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFIL 261 (383)
T ss_pred -----HHHhcC----CceehHHHHHHHHHHHH--HHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhH
Confidence 222211 23344455544444333 3478999999999999999974321 35678888899999999
Q ss_pred HHH-HHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhhHHH
Q 004016 342 PCF-IINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYS----------KIPFMDALALGLLLNCRGIYDIQ 410 (779)
Q Consensus 342 PlF-F~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~l~~kG~~~l~ 410 (779)
|+| |+..|..++-..+....-.....+++-.+++|.+|.+..+++. +++|++-..+|++-+.-=.+++.
T Consensus 262 PlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLF 341 (383)
T PRK14854 262 PVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLF 341 (383)
T ss_pred HHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 8899988842223211111233444555678998888776544 36889998888876666678888
Q ss_pred HHHhhhhc
Q 004016 411 VFTRAKQR 418 (779)
Q Consensus 411 ~~~~~~~~ 418 (779)
+++.+++.
T Consensus 342 Ia~LAF~~ 349 (383)
T PRK14854 342 IGVLAFND 349 (383)
T ss_pred HHHhhCCC
Confidence 99988853
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.03 E-value=8.7e-08 Score=104.79 Aligned_cols=291 Identities=12% Similarity=0.155 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHH---hcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHH
Q 004016 113 NVIECVGLIFMFFTLSARIDKGIVK---KSGKL---AIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLE 186 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~l~---~~~~~---~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l 186 (779)
..+-+.=+.++.|.+|+|+.-+.+. ++.|| ...-|+.|+++|.++ ++.+... ++....| | +=
T Consensus 65 ~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI----y~~~n~~-~~~~~GW------g-IP 132 (423)
T PRK14855 65 HWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL----YTALNAG-GPGASGW------G-VP 132 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH----HheeecC-CCccCcc------c-cc
Confidence 3444555667889999999887763 22233 334566677777653 2233221 1111112 2 22
Q ss_pred hhhhHHHHHHHHHHcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 004016 187 ATISFHVILANLTELKL-LNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVR 265 (779)
Q Consensus 187 s~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 265 (779)
..|+.+-...++.=+|- .+..+....++-|++||+.++++.++. .. ++. ...+......++.+
T Consensus 133 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF-Yt-----~~i---~~~~L~~a~~~~~~------- 196 (423)
T PRK14855 133 MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALF-YT-----SGL---NLLALLLAALTWAL------- 196 (423)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEee-cC-----CCC---CHHHHHHHHHHHHH-------
Confidence 34555555555555542 455677889999999999999887766 31 122 22233332221111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCC-c--------------------
Q 004016 266 PIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPP-M-------------------- 324 (779)
Q Consensus 266 ~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p-~-------------------- 324 (779)
.++.+|.. ++....++++.+++..+. ..-|+|+.++..++|+++|..++ .
T Consensus 197 ---l~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (423)
T PRK14855 197 ---ALLAGRLG----VTSLKIYAVLGALLWFFV--LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVG 267 (423)
T ss_pred ---HHHHHHcC----CccccHHHHHHHHHHHHH--HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhh
Confidence 12223321 233444555554443333 47899999999999999997411 1
Q ss_pred ----------------hhHHHHHHHHHHHHhhHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 004016 325 ----------------GSLLADKIQYFVWVAFIPCF-IINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYS 387 (779)
Q Consensus 325 ----------------~~~l~~kl~~~~~~lflPlF-F~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~ 387 (779)
.+++++++++.+..+.+|+| |+..|..++-..+.. +...+++-.++||.+|.+..++..
T Consensus 268 ~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~p----v~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 268 ARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLGT----VSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred HHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCCc----HHHHHHHHHHhcchHHHHHHHHHH
Confidence 23567777888888999999 889999885333222 223344455678999888776554
Q ss_pred ----------CCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHH
Q 004016 388 ----------KIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLV 444 (779)
Q Consensus 388 ----------~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv 444 (779)
+++|++-..+|++-+.-=.+++.+++.+++.....++.--.+.+.++++..+..-++
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L 410 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWL 410 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899888888766666788888888885332233333344444445443333333
No 27
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.90 E-value=8.6e-10 Score=122.53 Aligned_cols=361 Identities=11% Similarity=0.102 Sum_probs=225.1
Q ss_pred HHHHHHHHhhhC--CchhHHHHHHHHhcCccccCC--c-c------hhhhhcCCccchHHHHHHHHHHHHHHHHHHhhcc
Q 004016 63 TYAIQLLLKPFG--EAAFASQLLGGIALGPSLLSR--N-Q------ELKELVFPPKAVMAINVIECVGLIFMFFTLSARI 131 (779)
Q Consensus 63 ~~l~~~ll~rl~--~P~iv~~IlaGiilGP~~lg~--~-~------~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~ 131 (779)
+.+...+-.+++ .|.-...|+.|+++|-...+. + + -|.-.+.|+ ++|-+|.-|
T Consensus 54 aKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPP----------------IvlDAGYfM 117 (670)
T KOG1966|consen 54 AKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPP----------------IVLDAGYFM 117 (670)
T ss_pred HHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCH----------------HHhcccccC
Confidence 444444444555 688888888888888544222 1 1 111122232 788999999
Q ss_pred ChhHHHhcchhHHHHHHHHHHHHHHHHH--HHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhH
Q 004016 132 DKGIVKKSGKLAIVIGVGAFIIPLIVSI--LTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIG 209 (779)
Q Consensus 132 d~~~l~~~~~~~~~ia~~~~l~p~~~g~--~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g 209 (779)
.-+.+..+...++..|+.|.+.-..... +.+......++.. ......++.|...|..++..+..+..|.. .|.-+=
T Consensus 118 p~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~Lf 195 (670)
T KOG1966|consen 118 PNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLF 195 (670)
T ss_pred ccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEE
Confidence 9999999999999999999887544322 2222222223222 23567788999999999999999999998 466677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 004016 210 RLALSSSLLSSLIGWFAPTFYIYASENALVGITR-----RTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQD 284 (779)
Q Consensus 210 ~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~ 284 (779)
-++.+++++||.+.+++.-+. .....- ++.+. .....++....+.+++++.+...+.....|.+.+ ++-.
T Consensus 196 I~VFGESLlNDaVTVVLY~~f-~sf~~i-g~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrvi 270 (670)
T KOG1966|consen 196 IIVFGESLLNDAVTVVLYNMF-ISFVEI-GSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVL 270 (670)
T ss_pred eeeehhhhhcCceEEehHHHH-HHHHHh-cccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeee
Confidence 788899999999999988766 333321 11111 1111111111112223333333333444444432 3445
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCC-----CchhHHHHHHHHHHHHhhHHHHHHHhcccccccccch
Q 004016 285 HLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTP-----PMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF 359 (779)
Q Consensus 285 ~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~-----p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~ 359 (779)
+-++++.+...++..+|.++++++++-.+.|+++...- .....-++.+-...+..--++-|++.|..+-=..-.|
T Consensus 271 ePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~w 350 (670)
T KOG1966|consen 271 EPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHW 350 (670)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCccee
Confidence 56888999999999999999999999999999997531 1111222223333455566777888888763221123
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhc------CCChHHHHHHHHHhhhhhhhHHHHHHhhhhc-----CCCChhHHHH
Q 004016 360 NHFLAVEMVILIAGTVKTFAIVIPCLYS------KIPFMDALALGLLLNCRGIYDIQVFTRAKQR-----LQITDESFAI 428 (779)
Q Consensus 360 ~~~~~~~~iiv~~~~~K~~~~~l~~~~~------~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~-----~~i~~~~f~~ 428 (779)
. +..+.+-++.+.+-|.+++..-+++. +++..|.+.++.+ +.||.+...+...--+. ..+=..+..+
T Consensus 351 d-~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~V 428 (670)
T KOG1966|consen 351 D-FAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAV 428 (670)
T ss_pred e-hhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEE
Confidence 2 33344444555667888877766655 4677888887764 67888776554432212 2222345556
Q ss_pred HHHHHHHHHHhHHHHHHHhh
Q 004016 429 MVITAMFQSAIIIPLVKLVY 448 (779)
Q Consensus 429 lv~~~ll~t~i~~plv~~l~ 448 (779)
+.+++.+..+..-|+++++-
T Consensus 429 IfFTVflQGiTIkplvk~L~ 448 (670)
T KOG1966|consen 429 IFFTVFLQGITIKPLVKFLK 448 (670)
T ss_pred EeeeeeecccchHHHHHHHc
Confidence 66777777888899999975
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.89 E-value=1.8e-08 Score=108.69 Aligned_cols=287 Identities=15% Similarity=0.222 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHH
Q 004016 112 INVIECVGLIFMFFTLSARIDKGIVK---KSGKL---AIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATL 185 (779)
Q Consensus 112 l~~l~~lGl~~llF~~Gle~d~~~l~---~~~~~---~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ 185 (779)
.+.+.+.=+.++.|.+|+|+.-+.+. ++.|| ...-++.|+++|.++ +..+... .+. ..--+ .+
T Consensus 56 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI----yl~~n~~-~~~-----~~~GW-~I 124 (378)
T PF06965_consen 56 HHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI----YLAFNAG-GPE-----AAHGW-AI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGG--S-STT-----HHHHT-SS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH----HheeecC-CCC-----cCceE-Ee
Confidence 34455555677899999999887653 22233 344556677777642 2222221 110 11111 12
Q ss_pred HhhhhHHHHHHHHHHcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Q 004016 186 EATISFHVILANLTELKL-LNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVV 264 (779)
Q Consensus 186 ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 264 (779)
=..|+.+-...++.=+|- .+..+....++-|++||+.++++.++. .. . +. ...+......++. + .
T Consensus 125 P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~F-Yt---~--~i---~~~~L~~a~~~~~-~-l--- 190 (378)
T PF06965_consen 125 PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALF-YT---D--GI---SLLWLLLAAAALL-L-L--- 190 (378)
T ss_dssp SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHH-S-------------HHHHHHHHHHHH-H-H---
T ss_pred cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeee-eC---C--CC---CHHHHHHHHHHHH-H-H---
Confidence 234555555555554442 456677899999999999999888776 32 1 11 2222222221111 1 1
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCch--------hHHHHHHHHHH
Q 004016 265 RPIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMG--------SLLADKIQYFV 336 (779)
Q Consensus 265 r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~--------~~l~~kl~~~~ 336 (779)
|..+|.. ++....+..+..++ =+....-|+|+.++..+.|+.+|..++.+ +++++++++.+
T Consensus 191 -----~~l~r~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v 259 (378)
T PF06965_consen 191 -----FVLNRLG----VRSLWPYLLLGILL--WYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV 259 (378)
T ss_dssp -----HHHHHTT-------THHHHHHHHHH--HHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred -----HHHHHCC----CceehHHHHHHHHH--HHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence 2233321 23344444444333 22335789999999999999999875442 36788888888
Q ss_pred HHhhHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhc----------CCChHHHHHHHHHhhhhh
Q 004016 337 WVAFIPCF-IINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYS----------KIPFMDALALGLLLNCRG 405 (779)
Q Consensus 337 ~~lflPlF-F~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~l~~kG 405 (779)
..+.+|+| |+..|..++-..+....-.....+++-.+++|.+|.+..++.. +++|++-..+|.+-+.-=
T Consensus 260 ~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGF 339 (378)
T PF06965_consen 260 AFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGF 339 (378)
T ss_dssp HHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--H
T ss_pred hhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999 9999999886554321111122333445669999888776543 367788777887655556
Q ss_pred hhHHHHHHhhhhcCCCChhHHHHHHHHHH
Q 004016 406 IYDIQVFTRAKQRLQITDESFAIMVITAM 434 (779)
Q Consensus 406 ~~~l~~~~~~~~~~~i~~~~f~~lv~~~l 434 (779)
.+++.+++.+++.....++.--.+.+.++
T Consensus 340 TmSLFIa~LAF~~~~~~~~aK~gIL~~S~ 368 (378)
T PF06965_consen 340 TMSLFIAGLAFDDPALQNAAKLGILIGSL 368 (378)
T ss_dssp HHHHHHHHHHSTT-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHHHHHH
Confidence 78888888888874444443333333333
No 29
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.85 E-value=5.4e-07 Score=93.50 Aligned_cols=262 Identities=15% Similarity=0.192 Sum_probs=158.9
Q ss_pred HHHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHH
Q 004016 121 IFMFFTLSARIDKGIVK---KSGKLA---IVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVI 194 (779)
Q Consensus 121 ~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv 194 (779)
..+.+.+|+|+..+.+. ++++++ ..-++.|++.|.++ +..+....+.....| .+-+.|+.+-.
T Consensus 72 AvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GW-------aIP~ATDiAFA 140 (390)
T COG3004 72 AVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGW-------AIPMATDIAFA 140 (390)
T ss_pred HHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCc-------CcccHHHHHHH
Confidence 34677899999988774 333333 33455566666542 223322211011112 22344566666
Q ss_pred HHHHHHcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004016 195 LANLTELK-LLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMR 273 (779)
Q Consensus 195 ~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~ 273 (779)
..++.=++ ...+.+.-..++-|++||+-++++.++. .. .+.+ ..+.....++.. .. .-+++
T Consensus 141 lGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlF-Yt-----~~Ls---~~al~~a~~~i~---vL------~~lN~ 202 (390)
T COG3004 141 LGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALF-YT-----TDLS---MAALGIAALAIA---VL------AVLNR 202 (390)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhh-hc-----CCcc---HHHHHHHHHHHH---HH------HHHHH
Confidence 66666554 3567788889999999999998887766 32 1221 212222211111 11 11222
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHHHhhHHHH-HHHh
Q 004016 274 KTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPM----GSLLADKIQYFVWVAFIPCF-IINT 348 (779)
Q Consensus 274 ~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~----~~~l~~kl~~~~~~lflPlF-F~~~ 348 (779)
.. ++....+++...++..+.. .-|+|..+...+.|+.+|-.... -+++++.+.+.+..+.+|+| |+..
T Consensus 203 ~~-----v~~l~~Y~~~gviLW~~vl--kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNA 275 (390)
T COG3004 203 LG-----VRRLSPYLLVGVILWIAVL--KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANA 275 (390)
T ss_pred hC-----chhhhHHHHHHHHHHHHHH--HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccC
Confidence 21 2223445556666555554 77999999999999999965433 35677777788889999999 8899
Q ss_pred cccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhhHHHHHHhhhhc
Q 004016 349 GRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYS----------KIPFMDALALGLLLNCRGIYDIQVFTRAKQR 418 (779)
Q Consensus 349 G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~ 418 (779)
|..++--.+....-.+...+++-.+++|.+|.+..++.. +.+|++-..++++.+.-=.+++.+...+++.
T Consensus 276 Gvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 276 GVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred CcccccccccccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 988872222221111234455556779999888776654 4688888888886666667788888887765
No 30
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.35 E-value=2.3e-06 Score=79.42 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=87.6
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcCc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNKA 551 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 551 (779)
|||+|+...+....+++.+..++.. .+..++++|+++-... . ...+.++.++.+.+..+. .
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~-~~~~l~ll~v~~~~~~------~----------~~~~~~~~l~~~~~~~~~--~ 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR-LKAPWYVVYVETPRLN------R----------LSEAERRRLAEALRLAEE--L 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH-hCCCEEEEEEecCccc------c----------CCHHHHHHHHHHHHHHHH--c
Confidence 6999999999999999999888765 4557899999763211 0 012235556666555443 2
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcC-CCceEEE
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMS-PCSIGLL 613 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~a-pCsVgIl 613 (779)
++ .+.+..+ .+..+.|++.+++.++|+|++|.|+. .+..++++.++|+++| ||+|-|.
T Consensus 62 ~~--~~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 62 GA--EVVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CC--EEEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 33 3333444 57899999999999999999999983 2567899999999999 9997664
No 31
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.26 E-value=1.2e-05 Score=75.06 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=80.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCC---CccchhhHHHHHHHhhhhcCCCCCEEEEEEeecC
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMS---DFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEE 705 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~---~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~ 705 (779)
||+++.-|.++.+.++++|.+||+..+.+++++|+++...... .+.+++..++.+++..+.... ..+.....+..+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 79 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAAS-LGVPVHTIIRID 79 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhh-cCCceEEEEEec
Confidence 5889999999999999999999999999999999997532111 111122233444444433211 122222222222
Q ss_pred hHHHHHHHHhhh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 706 GFETLRIINAIA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 706 ~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
+ +..+.|.+++ .+.||+++|.++... | ...-+|..-+.+... ++++||||+
T Consensus 80 ~-~~~~~I~~~a~~~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 80 H-DIASGILRTAKERQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred C-CHHHHHHHHHHhcCCCEEEEecCCCCC---------c-cceecCchHHHHHhc---CCCCEEEeC
Confidence 2 2323333333 369999999987531 2 234589999999988 889999985
No 32
>PRK09982 universal stress protein UspD; Provisional
Probab=98.15 E-value=1e-05 Score=77.22 Aligned_cols=132 Identities=7% Similarity=0.095 Sum_probs=80.7
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcCc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNKA 551 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 551 (779)
+||+|+...++....+.-+..++.. .+.+++++|+++......+-......+ . ......++.-+.++.+.+.. .
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~~-~~a~l~llhV~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~~~~~~-~ 78 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELARH-NDAHLTLIHIDDGLSELYPGIYFPATE-D---ILQLLKNKSDNKLYKLTKNI-Q 78 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHH-hCCeEEEEEEccCcchhchhhhccchH-H---HHHHHHHHHHHHHHHHHHhc-C
Confidence 6999999988888888877777654 456899999986432111000000000 0 00000111112233333221 1
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCC-ChhhHHHHHHhhhcCCCceEEE
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE-PTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~-~~~~~~~n~~vl~~apCsVgIl 613 (779)
...++..... -+..+.||+.|++.++|+||||-|++. ++.++ +.++|+++++|+|-|.
T Consensus 79 ~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 79 WPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHHHSFINRLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred CCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCChhHHHHHHH-HHHHHHhcCCCCEEEe
Confidence 2234444334 378999999999999999999976533 44554 8999999999997765
No 33
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.14 E-value=2.5e-05 Score=74.68 Aligned_cols=128 Identities=10% Similarity=0.126 Sum_probs=81.0
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCC--C----------ccchhhHHHHHHHhhhhcCCCCCE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMS--D----------FIDEDRDQAMINDFRFVNLDSKNV 696 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~--~----------~~e~~~d~~~i~~~~~~~~~~~~v 696 (779)
.|++++=|.+..+.|+.+|.++++..+.+++++|++++..... . ++.++.-++.++++.+.. ....+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFC-SRKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCC
Confidence 3788999999999999999999999999999999986522110 0 011112234555554432 12244
Q ss_pred EEEEEeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccc-hhhhhhhcCCCCCc--eeEEEEee
Q 004016 697 EYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELG-VVGDLLASDDFKSR--ASVLVIQQ 771 (779)
Q Consensus 697 ~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG-~iGd~las~d~~~~--~SvLVvqq 771 (779)
.+...++..+ +..+.|.+.++ +.||+++|+++.. |+ ... -+| -+.+.++.. ++ ++|||||.
T Consensus 80 ~~~~~~~~g~-~~~~~I~~~a~~~~~dlIV~Gs~g~~------~l---~~~-~~gssva~~Vi~~---a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDD-DVAKAIVEYVADHGITKLVMGASSDN------HF---SMK-FKKSDVASSVLKE---APDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCC-cHHHHHHHHHHHcCCCEEEEeccCCC------ce---eec-ccCCchhHHHHhc---CCCCceEEEEeC
Confidence 5544444322 22333333333 5799999998642 22 111 355 688999888 77 99999984
No 34
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.10 E-value=1.4e-05 Score=76.26 Aligned_cols=133 Identities=8% Similarity=0.047 Sum_probs=80.5
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcCc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNKA 551 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 551 (779)
|||+|+...++....++.+..++.. ....++++|+.+......+-....... .......++..+.++.+.+. .
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~--~ 77 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARP-YNAKVSLIHVDVNYSDLYTGLIDVNLG----DMQKRISEETHHALTELSTN--A 77 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHh-hCCEEEEEEEccChhhhhhhhhhcchH----HHHHHHHHHHHHHHHHHHHh--C
Confidence 6999999888888888887777654 345789999842211100000000000 00001112223344444432 2
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCCChhhHHHHHHhhhcCCCceEEE
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTEPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~~~~~n~~vl~~apCsVgIl 613 (779)
++.+....... .+-++.|++.|++.++|+||+|-|+.....++++-++|++++||+|-|.
T Consensus 78 ~~~~~~~~~~~--G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 78 GYPITETLSGS--GDLGQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred CCCceEEEEEe--cCHHHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHhhCCCCEEEe
Confidence 33332222212 4679999999999999999999997322336899999999999997775
No 35
>PRK15456 universal stress protein UspG; Provisional
Probab=98.09 E-value=1.7e-05 Score=75.59 Aligned_cols=133 Identities=5% Similarity=-0.025 Sum_probs=83.0
Q ss_pred eEEEeecCC--CChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhc
Q 004016 472 RILVCIPEN--DHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTN 549 (779)
Q Consensus 472 riLv~i~~~--~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 549 (779)
|||+|+... ++....++.+..++.. . ..++++|+++...... . ....... ........++.-+.++.+.+..
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~-~-~~l~llhv~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQD-D-GVIHLLHVLPGSASLS-L--HRFAADV-RRFEEHLQHEAEERLQTMVSHF 77 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhc-C-CeEEEEEEecCccccc-c--cccccch-hhHHHHHHHHHHHHHHHHHHHh
Confidence 799999876 4677788887777643 3 3799999986542111 0 0000000 0000000111222233333221
Q ss_pred -CcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC--CChhhHHHHHHhhhcCCCceEEE
Q 004016 550 -KAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT--EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 550 -~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~--~~~~~~~~n~~vl~~apCsVgIl 613 (779)
...+.+++..... +..++|++.|++.++|+||||-|+. .+..+|++-++|++++||+|-|.
T Consensus 78 ~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 78 TIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred CCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEEEe
Confidence 2345667665544 7799999999999999999999982 24568999999999999997664
No 36
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.06 E-value=3.2e-06 Score=78.81 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=84.8
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHH---HHHHh
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFF---RYQQT 548 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~~~ 548 (779)
|||+|+.+.++....++.+..+... ....++++|+++............... ....+......+ .....
T Consensus 4 ~Ilv~~d~~~~~~~al~~a~~la~~-~~~~i~~l~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 75 (140)
T PF00582_consen 4 RILVAIDGSEESRRALRFALELAKR-SGAEITLLHVIPPPPQYSFSAAEDEES-------EEEAEEEEQARQAEAEEAEA 75 (140)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHHH-HTCEEEEEEEEESCHCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh-hCCeEEEEEeecccccccccccccccc-------ccccchhhhhhhHHHHHHhh
Confidence 7999999999999999888777764 556799999998764432211100000 000000000000 00111
Q ss_pred cCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEEE
Q 004016 549 NKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 549 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgIl 613 (779)
.+.........+ .+..+.|+..+++.++|+||+|.|+ + .+..++++.+++++++||+|-|+
T Consensus 76 --~~~~~~~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 76 --EGGIVIEVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp --HTTSEEEEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred --hccceeEEEEEe--eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 112233333334 4899999999999999999999998 2 35679999999999999998775
No 37
>PRK15005 universal stress protein F; Provisional
Probab=98.05 E-value=1.7e-05 Score=75.55 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=81.0
Q ss_pred eEEEeecCCCC--hHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhc
Q 004016 472 RILVCIPENDH--VPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTN 549 (779)
Q Consensus 472 riLv~i~~~~~--v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 549 (779)
+||+|+...++ ....++.+..++.. ....++++|+++............... ........++..+.++++.+..
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKI-DDAEVHFLTVIPSLPYYASLGLAYSAE---LPAMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhc-cCCeEEEEEEEccCccccccccccccc---chHHHHHHHHHHHHHHHHHHHh
Confidence 69999987776 35667666655543 345789999997532211100000000 0000001112223333333221
Q ss_pred -CcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC--CChhhHHHHHHhhhcCCCceEEE
Q 004016 550 -KAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT--EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 550 -~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~--~~~~~~~~n~~vl~~apCsVgIl 613 (779)
..+++++....- -+-.+.|++.|++.++|+|++|-|++ .+..+|++..+|++++||+|-|.
T Consensus 80 ~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 80 KLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEEEe
Confidence 123455554443 36689999999999999999998863 24578999999999999997764
No 38
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.04 E-value=2.9e-05 Score=74.22 Aligned_cols=136 Identities=10% Similarity=0.140 Sum_probs=85.6
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCcccccc-ccCCCCCCCCCCcchhHHHHHHHHHHhcC
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPH-RLDKNPSSSKPAKIDPLLHAFFRYQQTNK 550 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~-~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 550 (779)
.||+|+...++....++.+..+... ....++++|+++...... ..... ...+.......+..++.++.+.+..+ .
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~-~~~~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT-KGQTIVLVHVHPPITSIP-SSSGKLEVASAYKQEEDKEAKELLLPYRCFCS--R 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC-CCCcEEEEEeccCcccCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 4899999999999999998877664 455789999987532211 00000 00000000001122333433332221 2
Q ss_pred cceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCC---ChhhH-HHHHHhhhcCC--CceEEE
Q 004016 551 AYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE---PTLTK-KVINNVLSMSP--CSIGLL 613 (779)
Q Consensus 551 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~---~~~~~-~~n~~vl~~ap--CsVgIl 613 (779)
.++.++...... .+..+.|++.|++.++|+|+||-|+.. +..++ ++-++|++++| |+|-|.
T Consensus 77 ~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 77 KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEE
Confidence 345666555443 477999999999999999999998832 33455 69999999999 998764
No 39
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.03 E-value=2.5e-05 Score=72.69 Aligned_cols=127 Identities=18% Similarity=0.245 Sum_probs=78.2
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCC--ccchhhHHHHHHHhhh-------hcCCCCCEEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSD--FIDEDRDQAMINDFRF-------VNLDSKNVEYV 699 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~--~~e~~~d~~~i~~~~~-------~~~~~~~v~y~ 699 (779)
||++++-|.++.++|+.+|.++|++.+.+++++|+.+....... ..+...+...-..... .........+.
T Consensus 4 ~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T PF00582_consen 4 RILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVIEV 83 (140)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccceeEE
Confidence 89999999999999999999999999999999999986432110 0000000000000000 00011223333
Q ss_pred EEeecChHH-HHHHHHhhhcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 700 EEGVEEGFE-TLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 700 e~~v~~~~e-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
.....+..+ +.+.++ ..++|++|+|+++.. .|.+ --+|.+.+-++.. ++++||||-
T Consensus 84 ~~~~~~~~~~i~~~~~--~~~~dliv~G~~~~~---------~~~~-~~~gs~~~~l~~~---~~~pVlvv~ 140 (140)
T PF00582_consen 84 VIESGDVADAIIEFAE--EHNADLIVMGSRGRS---------GLER-LLFGSVAEKLLRH---APCPVLVVP 140 (140)
T ss_dssp EEEESSHHHHHHHHHH--HTTCSEEEEESSSTT---------STTT-SSSHHHHHHHHHH---TSSEEEEEE
T ss_pred EEEeeccchhhhhccc--cccceeEEEeccCCC---------CccC-CCcCCHHHHHHHc---CCCCEEEeC
Confidence 333334333 222222 358999999999732 2222 2399999999998 889999983
No 40
>PRK15005 universal stress protein F; Provisional
Probab=97.92 E-value=8.6e-05 Score=70.65 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=78.2
Q ss_pred eEEEeecCCcc--HHHHHHHHHHHhcCCCeEEEEEEEEecCCCC-------CCc-----cchhhHHHHHHHhhhhcCCCC
Q 004016 629 RVCVLFIGGAD--DREALALGARMGRNPSIHLTVTRFVVTNPTM-------SDF-----IDEDRDQAMINDFRFVNLDSK 694 (779)
Q Consensus 629 ~i~v~f~GG~d--dreAL~~a~rma~~~~v~ltv~~~~~~~~~~-------~~~-----~e~~~d~~~i~~~~~~~~~~~ 694 (779)
+|+++.=|.++ .+.|+++|.++|+..+.+++++|+++..... ..+ +.++.-++.++++.++.. ..
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 82 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK-LP 82 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 79999888776 4799999999999999999999999642110 000 011111234555554432 22
Q ss_pred CEEEEEEeecChHHHHHHHHhh-hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 695 NVEYVEEGVEEGFETLRIINAI-ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 695 ~v~y~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
.+.+... +..|.-...+++.. +.+.||+++|+++ . |+.+| -+|-..+-+... ++++||||.
T Consensus 83 ~~~~~~~-v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~------~~~~~----llGS~a~~vl~~---a~cpVlvVr 144 (144)
T PRK15005 83 TDRVHVH-VEEGSPKDRILELAKKIPADMIIIASHR-P------DITTY----LLGSNAAAVVRH---AECSVLVVR 144 (144)
T ss_pred CCceEEE-EeCCCHHHHHHHHHHHcCCCEEEEeCCC-C------Cchhe----eecchHHHHHHh---CCCCEEEeC
Confidence 2333333 33443332333322 2389999999763 1 22222 379999999999 899999983
No 41
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.85 E-value=5.6e-05 Score=69.54 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=88.0
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcCc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNKA 551 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 551 (779)
+||+|+.+.++...+++.+..++.. ....++++|+.+..+.... .... ....+.++.++.+..... ..
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~-~~~~i~~l~v~~~~~~~~~---~~~~------~~~~~~~~~l~~~~~~~~--~~ 68 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR-LGAELVLLHVVDPPPSSAA---ELAE------LLEEEARALLEALREALA--EA 68 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEecCCCCcch---hHHH------HHHHHHHHHHHHHHHHHh--cC
Confidence 6899999999999999999888875 4678899999765443321 0000 011123444444444321 23
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCC---ChhhHHHHHHhhhcCCCceEE
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE---PTLTKKVINNVLSMSPCSIGL 612 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~---~~~~~~~n~~vl~~apCsVgI 612 (779)
+++++...... +-.++|++.+++.++|++++|+++.. +..+++..+++++++||+|-+
T Consensus 69 ~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 69 GVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred CCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEe
Confidence 56666655444 23899999999999999999998732 457889999999999999765
No 42
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.84 E-value=0.0027 Score=67.36 Aligned_cols=254 Identities=11% Similarity=0.052 Sum_probs=138.1
Q ss_pred HHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHH
Q 004016 120 LIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLT 199 (779)
Q Consensus 120 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 199 (779)
+..++|-.|-++|++...+..||...+-..-+.++.+++..++.+++... -.....+.+-.+++.|--..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g----~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG----IFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc----ccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 44578899999999998888888888877888888888888877776321 12355566666666666666667778
Q ss_pred HcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 004016 200 ELKLLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGK 279 (779)
Q Consensus 200 el~l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~ 279 (779)
|+| -++|.|-..+ ..++|.=-+.++++. . .++. +.|
T Consensus 127 ~yG-~~~d~gA~~~--~sl~~GPf~tm~aLg-a------------------------------------~gLA-~ip--- 162 (312)
T PRK12460 127 EFG-DERDVGAISI--LSLNDGPFFTMLALG-A------------------------------------AGLA-NIP--- 162 (312)
T ss_pred HcC-CHhhhhHHhh--hhhccCcHHHHHHHH-H------------------------------------HHHh-cCC---
Confidence 887 3455552211 112222111111111 0 0111 011
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccch
Q 004016 280 PLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF 359 (779)
Q Consensus 280 ~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~ 359 (779)
..... +.+=|++.|+++.|..+ .+.+.+++- ..+.+|+|.+..|.++|++++..
T Consensus 163 ----~~~lv------------------~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~ 216 (312)
T PRK12460 163 ----IMALV------------------AALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQ 216 (312)
T ss_pred ----hHHHH------------------HHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHH
Confidence 00000 11224566666666432 333444432 45589999999999999988865
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHH--HHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHH-HHHHH
Q 004016 360 NHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALG--LLLNCRGIYDIQVFTRAKQRLQITDESFAIMVI-TAMFQ 436 (779)
Q Consensus 360 ~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg--~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~-~~ll~ 436 (779)
..+.. +++.++..+.-...+++..|++|.+.+-+..+| ..-+.=|-..++.+.-.++ -.- +.-+..+. ++++|
T Consensus 217 ~G~~G-IlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~--~~~-~~Ataqvaa~vivT 292 (312)
T PRK12460 217 AGLAG-ILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLA--PVA-AAATAQVAASVIVT 292 (312)
T ss_pred hChHH-HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHH--HHH-HHHHHHHHHHHHHH
Confidence 33332 222222233445556666688898888877777 4433333333332222211 122 23344444 44444
Q ss_pred HHhHHHHHHHhhccc
Q 004016 437 SAIIIPLVKLVYDSS 451 (779)
Q Consensus 437 t~i~~plv~~l~~p~ 451 (779)
.+++|.+..+++|+.
T Consensus 293 ail~P~~t~~~~k~~ 307 (312)
T PRK12460 293 AILTPLLTSWVAKKE 307 (312)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455556666543
No 43
>PRK09982 universal stress protein UspD; Provisional
Probab=97.82 E-value=6.2e-05 Score=71.86 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=74.6
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCC---C----C-Cccc---hhhHHHHHHHhhhhcCCCCCEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPT---M----S-DFID---EDRDQAMINDFRFVNLDSKNVE 697 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~---~----~-~~~e---~~~d~~~i~~~~~~~~~~~~v~ 697 (779)
+|+++.=|.++.+.|++.|.++|+.++++++++|++++... . . ++.+ ++..++.++++.++.. ...+.
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 83 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPKTK 83 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCcce
Confidence 89999999999999999999999999999999999864211 0 0 0111 1112234555554332 22233
Q ss_pred EEEEeecChHHHHHHHHhh-hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 698 YVEEGVEEGFETLRIINAI-ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 698 y~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
+ .+..|.--..+++.. ..+.||+|+|+++ + |++.| +| +.+-+... ++++||||.
T Consensus 84 ~---~v~~G~p~~~I~~~A~~~~aDLIVmG~~~---~----~~~~~-----~~-va~~V~~~---s~~pVLvv~ 138 (142)
T PRK09982 84 L---RIERGEMPETLLEIMQKEQCDLLVCGHHH---S----FINRL-----MP-AYRGMINK---MSADLLIVP 138 (142)
T ss_pred E---EEEecCHHHHHHHHHHHcCCCEEEEeCCh---h----HHHHH-----HH-HHHHHHhc---CCCCEEEec
Confidence 2 223342222222222 3479999999642 2 33333 25 66667777 889999984
No 44
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.81 E-value=0.00029 Score=64.69 Aligned_cols=126 Identities=23% Similarity=0.281 Sum_probs=79.1
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCC---CccchhhHHHHHHHhhhhcCCCCCEEEEEEeecC
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMS---DFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEE 705 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~---~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~ 705 (779)
+|++++-+++..+.++.+|.+||+..+.+++++++.++..... ++.+..-.++.++++.... ....+.+...++ .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~-~ 78 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREAL-AEAGVKVETVVL-E 78 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHH-hcCCCceEEEEe-c
Confidence 5788888889999999999999999999999999986533211 0112222346666776643 112233333333 2
Q ss_pred hHHHHHHHHhh-hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEE
Q 004016 706 GFETLRIINAI-ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVI 769 (779)
Q Consensus 706 ~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVv 769 (779)
+.....+++.. ..++|++|+|.++.. .|.+ --.|.+.+.|... ++++||+|
T Consensus 79 ~~~~~~i~~~~~~~~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 79 GDPAEAILEAAEELGADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence 22222223322 246899999987642 2222 2478888888877 77788875
No 45
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.79 E-value=0.00022 Score=66.04 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=78.1
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeecChHH
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEGFE 708 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~e 708 (779)
||++++-|.+..++|+.+|.++|++.+.+++++|+.+++.... +++ .++.++++++.... ..+.+. .+.++ +
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~---~~~-~~~~l~~~~~~~~~-~~~~~~--~~~~~-~ 72 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRL---SEA-ERRRLAEALRLAEE-LGAEVV--TLPGD-D 72 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccC---CHH-HHHHHHHHHHHHHH-cCCEEE--EEeCC-c
Confidence 5889999999999999999999999999999999987643211 111 13444554443211 123332 22222 2
Q ss_pred HHHHHHhhh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEE
Q 004016 709 TLRIINAIA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVI 769 (779)
Q Consensus 709 ~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVv 769 (779)
..+.|.+.. .+.|++++|.++. +.+ .. --+|-..+-++..- .++.|||+
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~--~~~-------~~-~~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRR--SRW-------RE-LFRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCC--chH-------HH-HhcccHHHHHHHhC--CCCeEEEe
Confidence 333443332 4689999999864 221 11 14899999998882 28899986
No 46
>PRK10116 universal stress protein UspC; Provisional
Probab=97.73 E-value=0.00014 Score=69.12 Aligned_cols=123 Identities=11% Similarity=0.161 Sum_probs=75.6
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCC----C---CccchhhH---HHHHHHhhhhcCCCCCEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTM----S---DFIDEDRD---QAMINDFRFVNLDSKNVEY 698 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~----~---~~~e~~~d---~~~i~~~~~~~~~~~~v~y 698 (779)
+|+++.-+.++...||++|.++|+..+++++++++++..... . ++.++... ++.+++...+. .+..
T Consensus 5 ~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 80 (142)
T PRK10116 5 NILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DYPI 80 (142)
T ss_pred eEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCe
Confidence 899999998999999999999999999999999998542110 0 00011111 23344433322 2222
Q ss_pred EEEeecChHHHHHHHHhh-hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 699 VEEGVEEGFETLRIINAI-ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 699 ~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
.+..+..|..-..+++.. ..++||+|+|.++.. +++.| +...+-++.. ++++||||-
T Consensus 81 ~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 81 EKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFSRA------SCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred EEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence 223344444433444443 238999999988642 22222 2356777777 899999994
No 47
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.69 E-value=0.00018 Score=68.65 Aligned_cols=124 Identities=12% Similarity=0.161 Sum_probs=77.3
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecC-CC-----CC--CccchhhHH---HHHHHhhhhcCCCCCEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTN-PT-----MS--DFIDEDRDQ---AMINDFRFVNLDSKNVE 697 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~-~~-----~~--~~~e~~~d~---~~i~~~~~~~~~~~~v~ 697 (779)
+|+++.=|.+..+.||.+|..+|+..+++++++|+..+. .. .. ++.+++..+ +.++++.... .+.
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 80 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----GYP 80 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----CCC
Confidence 899999999999999999999999999999999994321 10 00 011111111 2233333221 222
Q ss_pred EEEEeecChHHHHHHHHhh-hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeee
Q 004016 698 YVEEGVEEGFETLRIINAI-ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQ 772 (779)
Q Consensus 698 y~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~ 772 (779)
..+.++..|.-...+++.. +.+.||+|+|++++ + |. .+|-..+-+... ++++||||...
T Consensus 81 ~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~---~~---~lgSva~~v~~~---a~~pVLvv~~~ 140 (144)
T PRK15118 81 ITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQD-------F---WS---KLMSSARQLINT---VHVDMLIVPLR 140 (144)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCCEEEEeCccc-------H---HH---HHHHHHHHHHhh---CCCCEEEecCC
Confidence 2233443443333344443 24899999999842 1 11 267788888888 89999999854
No 48
>PRK10116 universal stress protein UspC; Provisional
Probab=97.69 E-value=0.00022 Score=67.75 Aligned_cols=134 Identities=10% Similarity=0.048 Sum_probs=80.7
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcC
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNK 550 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 550 (779)
-|||+++...++....+..+..++.. ....++++|+++...... . ......+. ......++..+.++.+.+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~-- 75 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP-VNGKISLITLASDPEMYN-Q-FAAPMLED---LRSVMQEETQSFLDKLIQD-- 75 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH-hCCEEEEEEEccCcccch-h-hhHHHHHH---HHHHHHHHHHHHHHHHHHh--
Confidence 37999998888888888888777654 344688899986532110 0 00000000 0001111222334444332
Q ss_pred cceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-CCChhhHHHHHHhhhcCCCceEEEe
Q 004016 551 AYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-TEPTLTKKVINNVLSMSPCSIGLLY 614 (779)
Q Consensus 551 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~~~~~~~~~n~~vl~~apCsVgIlv 614 (779)
.+++...... ...+-.+.|++.|++.++|+||+|-|+ +.-..+.++-.+|++++||+|-|+-
T Consensus 76 ~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 76 ADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred cCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2333322222 235778999999999999999999987 2212223677899999999988763
No 49
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.62 E-value=0.13 Score=57.15 Aligned_cols=301 Identities=14% Similarity=0.085 Sum_probs=148.1
Q ss_pred CCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHH
Q 004016 74 GEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFII 153 (779)
Q Consensus 74 ~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~ 153 (779)
.+|.++-.++.|+++.. +|.++ ++...+..+.+.+..+=+-+++.=++.|+++++|.++|.+..=..+ .+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HH
Confidence 47888888888888875 45541 1234556777777777777777888999999999998876543333 44
Q ss_pred HHHHHHHHHHHHhhcC-ccchhhhhh-HHHHHHHHh-hhhHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004016 154 PLIVSILTTLFIRDGL-ELDDELRST-LPMVATLEA-TISFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFY 230 (779)
Q Consensus 154 p~~~g~~~~~~l~~~~-~~~~~~~~~-~l~lg~~ls-~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~ 230 (779)
..++|..+++.+.+.. .++ .|.. +.+.|.-.. ..-+..+... ++. + ..+.-+....|+++.-+.+.+.
T Consensus 94 g~viG~~va~~l~~~~l~~~--~wk~ag~l~gsyiGGs~N~~Av~~a---l~~--~--~~~~~a~~aaDnv~~~~~~~~l 164 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGPE--GWKIAGMLAGSYIGGSVNFVAVAEA---LGV--S--DSLFAAALAADNVVMALWFAFL 164 (378)
T ss_pred HHHHHHHHHHHHHhhcccch--HHHHHHHHHhcccCchhHHHHHHHH---HCC--C--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665443 222 2221 122221111 1123333332 332 1 2333333444445554444444
Q ss_pred HHHHhhcc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCchhHHHHHHHHHHHHHH----H
Q 004016 231 IYASENAL-----VGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRK--TPEGKPLKQDHLVALNVIVLVVAL----V 299 (779)
Q Consensus 231 ~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~--~~~~~~~~e~~~~~il~~~l~~~~----~ 299 (779)
..+.... ............ -....+. .++.++.. ......+...+.... +
T Consensus 165 -~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~l 225 (378)
T PF05684_consen 165 -LALPPFARKFDRWTKADTSSIEAL-----------------EEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHAL 225 (378)
T ss_pred -HHHhhhhHHhhhccCCCccccchh-----------------hhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHH
Confidence 3322100 000000000000 0000000 00001111 122222333332222 2
Q ss_pred HHHh-----cch----hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHH
Q 004016 300 GELT-----GQN----SYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVIL 370 (779)
Q Consensus 300 se~l-----g~~----~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv 370 (779)
++.+ +.+ .++-....|++..- +|..+.+ .--+.+ ..+++-+||+.+|++.|+..+....+ .+++.+
T Consensus 226 a~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap~--~~l~~~ 300 (378)
T PF05684_consen 226 AAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDAPS--LFLFGF 300 (378)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHhHH--HHHHHH
Confidence 2222 111 12223334444432 2334333 222333 67888899999999999988765222 233444
Q ss_pred HHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhc
Q 004016 371 IAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQR 418 (779)
Q Consensus 371 ~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~ 418 (779)
+.+....+..+..+|++|+|..+...-+- =|.-|..+......+++.
T Consensus 301 i~l~iH~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~ 347 (378)
T PF05684_consen 301 IILAIHLLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGP 347 (378)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCC
Confidence 44567888888999999999977554443 455565555554444443
No 50
>PRK15456 universal stress protein UspG; Provisional
Probab=97.62 E-value=0.0005 Score=65.42 Aligned_cols=124 Identities=10% Similarity=0.084 Sum_probs=77.4
Q ss_pred eEEEeecCC--ccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCC------C--Cccc---hhhHHHHHHHhhhhcCCCCC
Q 004016 629 RVCVLFIGG--ADDREALALGARMGRNPSIHLTVTRFVVTNPTM------S--DFID---EDRDQAMINDFRFVNLDSKN 695 (779)
Q Consensus 629 ~i~v~f~GG--~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~------~--~~~e---~~~d~~~i~~~~~~~~~~~~ 695 (779)
+|+++.=|. +....|+++|.++|+.. .+++++|++++.... . ++.+ ++.-++.++++.++.. ...
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFT-IDP 81 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 899998887 47899999999999875 589999998753210 0 0011 1122234555554322 122
Q ss_pred EEEEEEeecChHHHHHHHHhhh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 696 VEYVEEGVEEGFETLRIINAIA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 696 v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
+.+. ..+..|. ..+.|.+.+ .+.||+|+|.++. + +. + .-+|-..+-++.. ++++||||.
T Consensus 82 ~~v~-~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~--~-~~----~----~llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 82 SRIK-QHVRFGS-VRDEVNELAEELGADVVVIGSRNP--S-IS----T----HLLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred cceE-EEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCC--C-cc----c----eecCccHHHHHHc---CCCCEEEeC
Confidence 3332 2233343 223333333 3799999999752 2 21 1 2389999999999 999999984
No 51
>PRK11175 universal stress protein UspE; Provisional
Probab=97.50 E-value=0.00033 Score=75.73 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=83.4
Q ss_pred ceEEEeecCCCCh-------HHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHH
Q 004016 471 LRILVCIPENDHV-------PTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFF 543 (779)
Q Consensus 471 ~riLv~i~~~~~v-------~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 543 (779)
-+||+++...+.. ...++.+..++.......++++|+.+............... ........++..+.++
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~ 229 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDP---SVYNDAIRGQHLLAMK 229 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccch---hhHHHHHHHHHHHHHH
Confidence 4799998865432 35677776665431145789999986543211000000000 0000001122233444
Q ss_pred HHHHhcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEEEecCCC
Q 004016 544 RYQQTNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGLLYDRSL 618 (779)
Q Consensus 544 ~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgIlvdrg~ 618 (779)
++.+.. +++........ .+..+.|++.|+++++|+|+||.|+ + .+..+|++.++|++++||+|-++..+|+
T Consensus 230 ~~~~~~--~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~~ 303 (305)
T PRK11175 230 ALRQKF--GIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDGY 303 (305)
T ss_pred HHHHHh--CCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCCC
Confidence 444332 33322222222 4678999999999999999999987 2 3567899999999999999888755554
No 52
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.47 E-value=0.024 Score=60.08 Aligned_cols=170 Identities=16% Similarity=0.076 Sum_probs=103.8
Q ss_pred HHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccch-hhhhhHHHHHHHHhhhhHHHHHHHH
Q 004016 120 LIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDD-ELRSTLPMVATLEATISFHVILANL 198 (779)
Q Consensus 120 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~-~~~~~~l~lg~~ls~Ts~~vv~~iL 198 (779)
+..++|-.|-++|++...+..||...+-+.-+++..++|.+++.+++..--.+. -.....+.+-.+++.+-...=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 455788999999999999999999888888888888888888887764310000 0135566666667777766666777
Q ss_pred HHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004016 199 TELKLLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEG 278 (779)
Q Consensus 199 ~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~ 278 (779)
.|++ -++|.|- .+...++|.=.+.++++- .+ + ..
T Consensus 131 ~~yG-d~~D~gA--~~i~sl~~GPf~tMl~LG-~s---G--~a------------------------------------- 164 (314)
T PF03812_consen 131 GQYG-DEEDVGA--FSILSLNDGPFFTMLALG-AS---G--LA------------------------------------- 164 (314)
T ss_pred HHhC-CHHHhHH--HHHHHhhhhHHHHHHHHh-hc---c--cc-------------------------------------
Confidence 7877 2444442 222223332222111111 00 0 00
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccc
Q 004016 279 KPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQ 358 (779)
Q Consensus 279 ~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~ 358 (779)
..+ ...+ -..+=+++.|+++.|.. +++.+.+.+ ....++|+|-...|..+|+..+.
T Consensus 165 -~ip-~~~l------------------v~~llP~iiG~iLGNLD---~~~r~fl~~-~~~~lIPF~~f~lGa~inl~~i~ 220 (314)
T PF03812_consen 165 -NIP-WMSL------------------VAALLPIIIGMILGNLD---PDFRKFLAP-GVPILIPFFGFALGAGINLSNII 220 (314)
T ss_pred -CCC-HHHH------------------HHHHHHHHHHHHHhcCC---HHHHHHHhc-CCCeeeehhhhhhcCCCCHHHHH
Confidence 000 0000 01233677888887753 455555555 46889999999999999998875
Q ss_pred h
Q 004016 359 F 359 (779)
Q Consensus 359 ~ 359 (779)
.
T Consensus 221 ~ 221 (314)
T PF03812_consen 221 K 221 (314)
T ss_pred H
Confidence 4
No 53
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.44 E-value=0.18 Score=55.04 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=57.6
Q ss_pred HhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHH
Q 004016 70 LKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVG 149 (779)
Q Consensus 70 l~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 149 (779)
+++.+++..+--|+.|+++|+......++ ..-| ...-.-+.+-.+|+++ .|.+++++++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHH
Confidence 35568999999999999999754222211 1111 1122445677888884 89999999999999988877666
Q ss_pred HHHHHHHHHHHHH
Q 004016 150 AFIIPLIVSILTT 162 (779)
Q Consensus 150 ~~l~p~~~g~~~~ 162 (779)
.+...+.++..++
T Consensus 98 ~v~~~~~~~~~~g 110 (335)
T TIGR00698 98 ILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555444
No 54
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.34 E-value=0.14 Score=54.86 Aligned_cols=147 Identities=14% Similarity=0.214 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHhcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHH--
Q 004016 112 INVIECVGLIFMFFTLSARIDKGIVKKSGKL---AIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLE-- 186 (779)
Q Consensus 112 l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~---~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l-- 186 (779)
++..-...+.++||..|+.+..+++++..++ .+....+++++--+++++++..+. . ..-+..|..+
T Consensus 36 ~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l-------~~~l~~Gl~ll~ 106 (319)
T COG0385 36 LGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--L-------PPELAVGLLLLG 106 (319)
T ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--C-------CHHHHHhHHhee
Confidence 3334477889999999999999998765543 344444444444445555555543 2 2234444443
Q ss_pred ---hhhhHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhHHHHHHHHHHHHHHHHHH
Q 004016 187 ---ATISFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENAL-VGITRRTVFLMNVSVIVMVIIIVF 262 (779)
Q Consensus 187 ---s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ 262 (779)
+.|++ .+...+.. .+. -++++.+.++.+++.++.-+. ..+.-++ ...+.+..++.++..++.-++.+.
T Consensus 107 ~~Pggv~S-~~~t~lAk-----GnV-alsV~~tsvStll~~f~tPll-v~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~ 178 (319)
T COG0385 107 CCPGGVAS-NAMTYLAK-----GNV-ALSVCSTSVSTLLGPFLTPLL-VGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQ 178 (319)
T ss_pred eCCCchhH-HHHHHHhc-----CcH-HHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33333 33333322 222 356677778888888777655 3333221 112445567777777777778888
Q ss_pred HHHHHHHHHHHhc
Q 004016 263 VVRPIIFWMMRKT 275 (779)
Q Consensus 263 v~r~~~~~l~~~~ 275 (779)
+.|+......++.
T Consensus 179 ~~r~~~~~~~~~~ 191 (319)
T COG0385 179 LLRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665553
No 55
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.19 Score=53.94 Aligned_cols=181 Identities=14% Similarity=0.097 Sum_probs=92.4
Q ss_pred chhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHH
Q 004016 76 AAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPL 155 (779)
Q Consensus 76 P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~ 155 (779)
+-+.-.+++|+.+|-..-+......+ -+...++.--.+|+++.|+=.=+++|.+++++..|+.-.+.+ +...-+
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~-----~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~l-sL~~Nw 91 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGK-----LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLIL-SLFVNW 91 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhccc-----ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHH-HHHHHH
Confidence 34666778888888443221110000 012233444568888888888889999999887765433322 233334
Q ss_pred HHH----HHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004016 156 IVS----ILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFYI 231 (779)
Q Consensus 156 ~~g----~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~~ 231 (779)
+++ +++++++... .+ .+..|.++-.-+ |.++.++.=-++.+.+. ..++..-.+||++.+++++..
T Consensus 92 ii~P~lm~~la~~fl~~----~p----ey~~GlILlglA-pC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~- 160 (342)
T COG0798 92 IIGPLLMFALAWFFLPD----EP----EYRAGLILLGLA-PCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPL- 160 (342)
T ss_pred HHHHHHHHHHHHHHhCC----CH----HHHHHHHHHHhh-hhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHH-
Confidence 333 3334444322 11 223333322211 22222222223333333 345555679999999888765
Q ss_pred HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004016 232 YASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKT 275 (779)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~ 275 (779)
....-+ ..+....++.++..++..+.+-++.+...+++..|.
T Consensus 161 ~~~~l~--v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 161 GKFFLG--VISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHHHh--hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433322 111222345566665555555666666666666554
No 56
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.19 E-value=0.046 Score=59.52 Aligned_cols=126 Identities=8% Similarity=0.040 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhc-----chhhHHHHHHHhhcCCCCCc--hhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhh
Q 004016 289 LNVIVLVVALVGELTG-----QNSYLGPFILGITTPVTPPM--GSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNH 361 (779)
Q Consensus 289 il~~~l~~~~~se~lg-----~~~~lGaflaGL~l~~~~p~--~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~ 361 (779)
+...+.+..++.++++ +....++++.|.++.+.-+. ..++.++.-+.+.++-+-+|.+..=|++.+..+.+..
T Consensus 227 i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~ 306 (404)
T COG0786 227 IAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLA 306 (404)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444556777766 45678999999999875321 1224444444557888889988888899988876543
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhh-hhhhHHHHHHh
Q 004016 362 FLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNC-RGIYDIQVFTR 414 (779)
Q Consensus 362 ~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~-kG~~~l~~~~~ 414 (779)
..+.+++.+-..+--+.+.+...|..+-+...+..-+.-++. -|...-++++.
T Consensus 307 lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 307 LPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 443444444444445566667777777776655543333332 23444444444
No 57
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.11 E-value=0.26 Score=54.74 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=53.8
Q ss_pred chhhHHHHHHHhhcCCCCCc--hhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHH
Q 004016 305 QNSYLGPFILGITTPVTPPM--GSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVI 382 (779)
Q Consensus 305 ~~~~lGaflaGL~l~~~~p~--~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l 382 (779)
++...++++.|+++.+.... ..++..+.-+...++.+-+|.+..=+.+++..+.+......+++++-.++.=+...++
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv 326 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFV 326 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999764210 0112222222345666666667777778887776543333333333333334445566
Q ss_pred HHHhcCCChHHHHHHHHHh
Q 004016 383 PCLYSKIPFMDALALGLLL 401 (779)
Q Consensus 383 ~~~~~~~~~~~~l~lg~~l 401 (779)
..|..+-++ |+..++...
T Consensus 327 ~fr~~gkdy-daavm~~G~ 344 (368)
T PF03616_consen 327 TFRVMGKDY-DAAVMSAGF 344 (368)
T ss_pred hhhhhCCCh-hHHHHhhhh
Confidence 667777675 666654443
No 58
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.79 E-value=0.23 Score=53.64 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=61.0
Q ss_pred hhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchH-HHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHH
Q 004016 71 KPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVM-AINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVG 149 (779)
Q Consensus 71 ~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~-~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 149 (779)
+..+++..+--|+.|+++|+..++..+.+. +..+ .-+.+-.+|+++ .|.++++.++.+.+.+.+.+...
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~------~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARFK------PGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHHH------hHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHH
Confidence 346789999999999999973344322211 1222 235777888884 89999999999999988888777
Q ss_pred HHHHHHHHHHHHH-HHHh
Q 004016 150 AFIIPLIVSILTT-LFIR 166 (779)
Q Consensus 150 ~~l~p~~~g~~~~-~~l~ 166 (779)
.+...+.++..++ ..++
T Consensus 92 ~v~~~~~~~~~lg~r~~~ 109 (305)
T PF03601_consen 92 VVILTFLLTYWLGRRLFG 109 (305)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 7777777666555 4443
No 59
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.66 E-value=1.3 Score=48.08 Aligned_cols=299 Identities=17% Similarity=0.174 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCch--hHH-HHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHh
Q 004016 52 VFLPMLLVTILTYAIQLLLKPFGEAA--FAS-QLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLS 128 (779)
Q Consensus 52 ~l~~l~lil~~~~l~~~ll~rl~~P~--iv~-~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~G 128 (779)
...|.++.++++.+.++++..+++|. ..| -+++|++.+-.... ++ .| ..+...|.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-l~------~P-------~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-LP------LP-------RGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-cc------CC-------hHHHHHHHHHHHHHHh
Confidence 35677788888888999999988764 556 66777776622111 11 12 3344556666666789
Q ss_pred hccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChh
Q 004016 129 ARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEI 208 (779)
Q Consensus 129 le~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~ 208 (779)
..+..+.+... ++-+.+.....+++...+...+|++......+ ..++++-..--..+..+.+ -+|.|. |.+.
T Consensus 73 ~~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~---~~Ta~~gs~PGgas~m~~i---A~d~gA-d~~~ 144 (352)
T COG3180 73 ASLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFSILP---GNTAFLGSSPGGASAMVSI---AQDYGA-DLRL 144 (352)
T ss_pred hhcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhcCCC---cchhhHhcCCchHHHHHHH---HHHhCC-ChhH
Confidence 99888876433 23333334444455555555666655432111 1222222111112222222 145441 2221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCCc
Q 004016 209 GRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFVVRPIIFWMMRKTPEG------KPLK 282 (779)
Q Consensus 209 g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~------~~~~ 282 (779)
--+. ...-.+.+...+-++.+.... .++..++ .+..
T Consensus 145 VAl~------------------------------------Q~lRvl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~ 186 (352)
T COG3180 145 VALM------------------------------------QYLRVLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVD 186 (352)
T ss_pred HHHH------------------------------------HHHHHHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhh
Confidence 1110 111111111112222221110 1111111 0111
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccch-
Q 004016 283 QDHLVALNVIVLVVALVGELTGQN--SYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF- 359 (779)
Q Consensus 283 e~~~~~il~~~l~~~~~se~lg~~--~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~- 359 (779)
...+.+.+...++.+.+...+++. ..+|+++.|..+.-+....-++-+-+ ..+-.-+.-..+|.++|-..+..
T Consensus 187 ~~~~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl----~~va~~~iG~~IG~~f~~~~l~~~ 262 (352)
T COG3180 187 WLILLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL----LAVAQALIGALIGSRFDRSILREA 262 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH----HHHHHHHHHHHHcccccHHHHHHh
Confidence 111445555566666777777774 47888888888876532222222211 12222344567899988655532
Q ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhh
Q 004016 360 -NHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQ 417 (779)
Q Consensus 360 -~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~ 417 (779)
......++.++..++.-...+++..++.+.++.++.. ..+|-|.-+++....+.+
T Consensus 263 ~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 263 KRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALG 318 (352)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcC
Confidence 2222234444444555666777888888999887643 368888888877666544
No 60
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.63 E-value=1.3 Score=48.20 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhHHHH---HHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhh
Q 004016 113 NVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVI---GVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATI 189 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 189 (779)
+.....++..+.|..|+.++.+++++..++.-.. -...+++.-++++++...+.... ...+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence 4567778888889999999999998765543322 22223222233444444443222 1224444333222
Q ss_pred -----hHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhHHHHHHHHHHHHHHHHHHH
Q 004016 190 -----SFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENA-LVGITRRTVFLMNVSVIVMVIIIVFV 263 (779)
Q Consensus 190 -----s~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~v 263 (779)
+..++ +.+.- +.+ -..++..+.++.+++.++.-+.+....++ +.+.+....+..+...++.-.+++-+
T Consensus 103 lPtTv~S~v~---~T~~A--gGN-~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~ 176 (313)
T PF13593_consen 103 LPTTVSSSVV---LTRLA--GGN-VALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQL 176 (313)
T ss_pred CCchhhHHHH---HHHHc--CCC-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22332 22222 222 24677778899999998876652222312 01122233444555555566666667
Q ss_pred HHHHHHHHHHh
Q 004016 264 VRPIIFWMMRK 274 (779)
Q Consensus 264 ~r~~~~~l~~~ 274 (779)
.|+...+..+|
T Consensus 177 ~r~~~~~~~~~ 187 (313)
T PF13593_consen 177 LRRWVPKWVAR 187 (313)
T ss_pred HHHHHHHHHHH
Confidence 77665555444
No 61
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.50 E-value=0.75 Score=50.34 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhccChhHHHhcchhHHHH---HHHHHH-HHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHH
Q 004016 117 CVGLIFMFFTLSARIDKGIVKKSGKLAIVI---GVGAFI-IPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFH 192 (779)
Q Consensus 117 ~lGl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~l-~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~ 192 (779)
.++++++||-.|++++++++++..|+...+ -..+++ .|+ ++++++..+... ...+.+|..+-...+.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~--------~p~l~~GliLv~~~Pg 116 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRD--------LFEYIAGLILLGLARC 116 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCC--------CHHHHHHHHHHHhcch
Confidence 356678999999999999988766554332 222332 333 455555544221 1224555443322222
Q ss_pred -HHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004016 193 -VILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFY 230 (779)
Q Consensus 193 -vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~ 230 (779)
+.+.+.+.+- +.+.. ++++.+.++.+++.++.-..
T Consensus 117 g~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 117 IAMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2233334433 34333 56666677888777666444
No 62
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.49 E-value=0.15 Score=53.95 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=58.7
Q ss_pred HHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccch-hhhhhHHHHHHHHhhhhHHHHHHHH
Q 004016 120 LIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDD-ELRSTLPMVATLEATISFHVILANL 198 (779)
Q Consensus 120 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~-~~~~~~l~lg~~ls~Ts~~vv~~iL 198 (779)
+..++|-.|-++|++...+..||...+-..-++++.+++.+++.+++..--... -.....+.+-.+++.|--..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 345788999999999988888888777777888888888888877764210000 1124455555556666655555666
Q ss_pred HHcCccCChhH
Q 004016 199 TELKLLNSEIG 209 (779)
Q Consensus 199 ~el~l~~s~~g 209 (779)
.|++ -++|.|
T Consensus 131 ~qyG-d~~D~g 140 (314)
T TIGR00793 131 QQYG-TKEEAG 140 (314)
T ss_pred HHcC-CHhhhh
Confidence 7777 244444
No 63
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.45 E-value=1.8 Score=48.57 Aligned_cols=94 Identities=11% Similarity=0.109 Sum_probs=55.9
Q ss_pred cchhhHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhH-HHH
Q 004016 304 GQNSYLGPFILGITTPVTPPMG--SLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKT-FAI 380 (779)
Q Consensus 304 g~~~~lGaflaGL~l~~~~p~~--~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~-~~~ 380 (779)
.++...+|++.|+++.+..+.. .++.++.-+...++.+-+|.+..=|.++++.+.+.... .+++.+...+.-. ...
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~P-lliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGP-IALILLVQVMFMALYAI 322 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3677899999999998742211 12333343445777788888888888998887654333 2333333333333 444
Q ss_pred HHHHHhcCCChHHHHHHHH
Q 004016 381 VIPCLYSKIPFMDALALGL 399 (779)
Q Consensus 381 ~l~~~~~~~~~~~~l~lg~ 399 (779)
++.-|..+-+ .|+-.+..
T Consensus 323 fv~fr~mg~~-ydaaV~~a 340 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVLCA 340 (398)
T ss_pred HHhHHhccch-HHHHHHhc
Confidence 5566666655 67666443
No 64
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.42 E-value=0.022 Score=62.63 Aligned_cols=122 Identities=10% Similarity=0.038 Sum_probs=72.7
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCC--CeEEEEEEEEecCCCCCC-ccchhhHHHHHHHhhhhcC-----CCCCEEEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNP--SIHLTVTRFVVTNPTMSD-FIDEDRDQAMINDFRFVNL-----DSKNVEYVE 700 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltv~~~~~~~~~~~~-~~e~~~d~~~i~~~~~~~~-----~~~~v~y~e 700 (779)
||++++=|.+..+.|+++|..+|+.. +++++++|+++....... +...+..++.+++.++... ....+.+..
T Consensus 7 kILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~ 86 (357)
T PRK12652 7 RLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTIET 86 (357)
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCceEE
Confidence 89999999999999999999999985 699999999975321111 1111222334444444321 113566655
Q ss_pred EeecC------hHHHHHHHHhhh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCC
Q 004016 701 EGVEE------GFETLRIINAIA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDF 760 (779)
Q Consensus 701 ~~v~~------~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~ 760 (779)
.++.. ..+..+.|.+.+ ++.||+|+|..-.... ..|-|-+++-.|+..+.
T Consensus 87 ~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~----------~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 87 ALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGG----------TAPMLQPLERELARAGI 144 (357)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCC----------CCcccchHHHHHHhcCC
Confidence 55431 123333443333 3799999999853221 12345555555555543
No 65
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.29 E-value=0.055 Score=51.22 Aligned_cols=138 Identities=16% Similarity=0.171 Sum_probs=81.4
Q ss_pred ceEEEeec-CCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCC--CCCCCCcchhHHHHHHHHHH
Q 004016 471 LRILVCIP-ENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNP--SSSKPAKIDPLLHAFFRYQQ 547 (779)
Q Consensus 471 ~riLv~i~-~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~--~~~~~~~~~~i~~af~~~~~ 547 (779)
.++++.+. +.+........+...... ....++.+++++..+............... ........++.++..+...+
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKR-LGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHh-cCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46778877 666666666666665554 333455777776654432211111000000 00011223556666665544
Q ss_pred hcCcceE-EEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-CC--ChhhHHHHHHhhhcCCCceEEE
Q 004016 548 TNKAYVS-VQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-TE--PTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 548 ~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~~--~~~~~~~n~~vl~~apCsVgIl 613 (779)
. ..+. ++....-. ..-.+.|+..|.+.++|+|++|-++ +. +-.+|++-++|++++||+|-+.
T Consensus 85 ~--~~~~~~~~~~~~g--~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 85 A--AGVPVVETEVVEG--SPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred H--cCCCeeEEEEecC--CCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEE
Confidence 3 2222 23332222 2336999999999999999999976 22 3479999999999999997665
No 66
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.09 E-value=0.2 Score=53.30 Aligned_cols=128 Identities=14% Similarity=0.085 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCch-hHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHH
Q 004016 292 IVLVVALVGELTGQNSYLGPFILGITTPVTPPMG-SLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVIL 370 (779)
Q Consensus 292 ~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~-~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv 370 (779)
.....+.+++.++++.++|-.++|+++.... ++ -.-.+.++.+ ..+-+.++....|+++|++.+... +.....+..
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~-~~~~~~~~~ 79 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL-RKAAFGVGV 79 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHH
Confidence 3455678889999999999999999996431 11 0111234444 456666777889999999887532 111222222
Q ss_pred HHHHhh-HHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChh
Q 004016 371 IAGTVK-TFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDE 424 (779)
Q Consensus 371 ~~~~~K-~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~ 424 (779)
..++.- ++.++...++.+.++.+++.+|..+++-. .-++..+..|.+..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~ 132 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTP 132 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccCh
Confidence 222223 33444556778999999999999887553 23344445556655544
No 67
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.05 E-value=0.18 Score=60.06 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHH
Q 004016 286 LVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTP-PMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLA 364 (779)
Q Consensus 286 ~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~-p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~ 364 (779)
+.+.++.+.+...++..+|+++++|=.++|+++.... ..-. -.+.++.+ ..+-+.++...+|+++|+..+... ...
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~-~~~ 86 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHF-AEFGVVLMLFVIGLELDPQRLWKL-RRS 86 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH-HHH
Confidence 4455666667788888999999999999999995421 1111 12334444 566666777888999999887531 111
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCC
Q 004016 365 VEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQIT 422 (779)
Q Consensus 365 ~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~ 422 (779)
++.+-...++.-++..+..+++++.++..++.+|..++.-.. .+ ...+-.+.+.++
T Consensus 87 ~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-ai-v~~~L~e~~~l~ 142 (621)
T PRK03562 87 IFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AI-AMQAMNERNLMV 142 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HH-HHHHHHHhcccc
Confidence 111111111112233344556778999999999987765432 22 244444444433
No 68
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=95.96 E-value=3.3 Score=46.20 Aligned_cols=257 Identities=9% Similarity=0.029 Sum_probs=134.5
Q ss_pred hccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHH-----hhhhHHHHHHHHHHcCc
Q 004016 129 ARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLE-----ATISFHVILANLTELKL 203 (779)
Q Consensus 129 le~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l-----s~Ts~~vv~~iL~el~l 203 (779)
+.||.+.+.|...|-+..-+.+.+..++++.+++.+++... ....+.++.-. ..-+.|...-.-+-++.
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~------~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~ 182 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF------KDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQ 182 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHHHhhhcCCCccccHhHHHHHHHHHhCC
Confidence 48999999999999888888888888888888888887543 12222222211 11112222111122343
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cc--------c---h-------hHHHHHHHHHHHHHHHHHHH
Q 004016 204 LNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALV--GI--------T---R-------RTVFLMNVSVIVMVIIIVFV 263 (779)
Q Consensus 204 ~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~--~~--------~---~-------~~~~~~~~~~i~~~~~~~~v 263 (779)
-.++.=..++.+.++.++++++.-++. .-+..... ++ + . ......+... ++..+.+|.
T Consensus 183 ~~~~~~s~~ipa~~lgNi~AIi~aglL-~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~G-llla~~~y~ 260 (414)
T PF03390_consen 183 DAEEYFSQLIPALTLGNIFAIIFAGLL-NKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAG-LLLACSFYI 260 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHH-HHHHHHHHH
Confidence 344555556677778888887776665 44432100 00 0 0 0001112221 122233344
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHH
Q 004016 264 VRPIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPC 343 (779)
Q Consensus 264 ~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPl 343 (779)
+..++..++ .++ .+.+.++..++ ...+|+ +| +.-++=.++...|...-+.+-
T Consensus 261 ~G~ll~~~i-------~ih-~~a~mIi~~~i-----~K~~~l------------vP---~~~e~~a~~~~~f~~~~lt~~ 312 (414)
T PF03390_consen 261 LGVLLSKLI-------GIH-AYAWMIILVAI-----VKAFGL------------VP---ESLEEGAKQWYKFFSKNLTWP 312 (414)
T ss_pred HHHHHHHhc-------CCc-HHHHHHHHHHH-----HHHhCc------------CC---HHHHHHHHHHHHHHHHHHHHH
Confidence 433333333 111 12222211111 111111 11 112222334445555555666
Q ss_pred HHHHhccc-ccccccch-hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHH-HHHHHHHhhhh-hhhHHHHHHhhhhcC
Q 004016 344 FIINTGRR-VDLYSIQF-NHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMD-ALALGLLLNCR-GIYDIQVFTRAKQRL 419 (779)
Q Consensus 344 FF~~~G~~-~d~~~l~~-~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~-~l~lg~~l~~k-G~~~l~~~~~~~~~~ 419 (779)
..+-+|+. +|++++.. -++. -+++++..+++-.+++++.+++.|+-+-| ++.-|+.|+.+ |.=|+++.+.+.+.+
T Consensus 313 lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 313 LLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred HHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 66677887 88877643 2343 34444555667778889999999875555 56666566666 455688888887777
Q ss_pred CCC
Q 004016 420 QIT 422 (779)
Q Consensus 420 ~i~ 422 (779)
++.
T Consensus 392 Lmp 394 (414)
T PF03390_consen 392 LMP 394 (414)
T ss_pred ccc
Confidence 664
No 69
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=95.89 E-value=1.8 Score=47.10 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=52.6
Q ss_pred HHHhhHHHHHHHhccc-ccccccch-hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHH-HHHHHHhhhhhh-hHHHH
Q 004016 336 VWVAFIPCFIINTGRR-VDLYSIQF-NHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDA-LALGLLLNCRGI-YDIQV 411 (779)
Q Consensus 336 ~~~lflPlFF~~~G~~-~d~~~l~~-~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~-l~lg~~l~~kG~-~~l~~ 411 (779)
.+.+.-|+.+. +|.. +|+..+.. -+|.. +++.+...++-..+.++.+|+.++-+-|+ ..-|+.|+.+|. =|+++
T Consensus 325 sk~~t~~Lm~g-iGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaV 402 (438)
T COG3493 325 SKNLTWPLMAG-IGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAV 402 (438)
T ss_pred HHhhHHHHHHh-hhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHH
Confidence 34555566544 4555 78766643 23432 22333344566778888999988755554 455588888755 45888
Q ss_pred HHhhhhcCCCC
Q 004016 412 FTRAKQRLQIT 422 (779)
Q Consensus 412 ~~~~~~~~~i~ 422 (779)
.+.+-+.++++
T Consensus 403 LsAa~RM~Lmp 413 (438)
T COG3493 403 LSAADRMELMP 413 (438)
T ss_pred hhhcchhcccc
Confidence 77776666665
No 70
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.86 E-value=0.22 Score=53.80 Aligned_cols=164 Identities=11% Similarity=0.038 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHH----HhcchhhHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHH
Q 004016 289 LNVIVLVVALVGE----LTGQNSYLGPFILGITTPV-TPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFL 363 (779)
Q Consensus 289 il~~~l~~~~~se----~lg~~~~lGaflaGL~l~~-~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~ 363 (779)
.+++..+..++++ ..++++.+=|.+.|+++.| .....+....-++. ....++.+=.+..|.++++.++....+.
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~-~~k~~Lr~gIVLlG~~l~~~~i~~~G~~ 84 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKF-SSKKLLRLGIVLLGFRLSFSDILALGWK 84 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHH-HHHHHHHHHHHHHCccccHHHHHHhCcc
Confidence 3444444444444 3577788889999999998 54445555555554 3567888889999999999887654343
Q ss_pred HHHHHHHHHHHhhHHHHHHHH-HhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCCh-hHHHHHHHHHHHHHHhHH
Q 004016 364 AVEMVILIAGTVKTFAIVIPC-LYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITD-ESFAIMVITAMFQSAIII 441 (779)
Q Consensus 364 ~~~~iiv~~~~~K~~~~~l~~-~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~-~~f~~lv~~~ll~t~i~~ 441 (779)
.....++ ....=+..++..+ |.+|++.+.+..++...+.=|.-.++...-..+.+--+. ...+.+.+.-++..++.|
T Consensus 85 ~~~~~~~-~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P 163 (305)
T PF03601_consen 85 GLLIIII-VVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYP 163 (305)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHH
Confidence 2222222 2233344444445 999999999999999988878777666655444431110 112222233333344455
Q ss_pred HHHHHhhcccchh
Q 004016 442 PLVKLVYDSSRKY 454 (779)
Q Consensus 442 plv~~l~~p~~~~ 454 (779)
.+.+.+.-+...+
T Consensus 164 ~l~~~l~l~~~~~ 176 (305)
T PF03601_consen 164 LLGHALGLSPQQF 176 (305)
T ss_pred HHHHHhCCCHHHH
Confidence 5566655443333
No 71
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.65 E-value=0.36 Score=57.01 Aligned_cols=132 Identities=10% Similarity=0.063 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHH
Q 004016 288 ALNVIVLVVALVGELTGQNSYLGPFILGITTPVTP-PMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVE 366 (779)
Q Consensus 288 ~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~-p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~ 366 (779)
.+++..++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|++.+... .....
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~-~~~~~ 89 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV-KSIAI 89 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH-hhHHH
Confidence 34556667778888899999999999999996532 11111 1233433 455556667778999999877431 11111
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChh
Q 004016 367 MVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDE 424 (779)
Q Consensus 367 ~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~ 424 (779)
...+..++.-++.+++....++.++.+++.+|..++.-.. .++.....+.|.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~ 145 (558)
T PRK10669 90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQ 145 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCc
Confidence 1111111222333444556678999999999987776332 4455556667766653
No 72
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.60 E-value=0.36 Score=52.48 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004016 122 FMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIR 166 (779)
Q Consensus 122 ~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~ 166 (779)
.++|-.|-++|++...+..||...+.+.-+.+..+++...+.++.
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 678899999999998888888887777777777777766665554
No 73
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=95.45 E-value=0.17 Score=47.77 Aligned_cols=130 Identities=19% Similarity=0.237 Sum_probs=79.5
Q ss_pred eEEEeec-CCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCC-------C-------ccchhhHHHHHHHhhhhcCCC
Q 004016 629 RVCVLFI-GGADDREALALGARMGRNPSIHLTVTRFVVTNPTMS-------D-------FIDEDRDQAMINDFRFVNLDS 693 (779)
Q Consensus 629 ~i~v~f~-GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~-------~-------~~e~~~d~~~i~~~~~~~~~~ 693 (779)
+|++.+- |.+..+.|+..|...++..+..++++++.+...... . ...+...++.+++.+.....
T Consensus 7 ~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 85 (154)
T COG0589 7 KILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAEA- 85 (154)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 7888888 888999999999999999999999888876532110 0 01122234555555443221
Q ss_pred CCEEEEEEeecChHHH-HHHHHhh-hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEee
Q 004016 694 KNVEYVEEGVEEGFET-LRIINAI-ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQ 771 (779)
Q Consensus 694 ~~v~y~e~~v~~~~e~-~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq 771 (779)
..+...+..+..|+.. ...+... .++.||+++|.++. + .|.+ =-||-.-+.++.. ++++||||..
T Consensus 86 ~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~--~-------~l~~-~llGsvs~~v~~~---~~~pVlvv~~ 152 (154)
T COG0589 86 AGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGR--S-------GLSR-LLLGSVAEKVLRH---APCPVLVVRS 152 (154)
T ss_pred cCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCC--c-------cccc-eeeehhHHHHHhc---CCCCEEEEcc
Confidence 1222112222223221 1122111 23799999999732 1 2222 3589999999999 8999999975
Q ss_pred e
Q 004016 772 Q 772 (779)
Q Consensus 772 ~ 772 (779)
.
T Consensus 153 ~ 153 (154)
T COG0589 153 E 153 (154)
T ss_pred C
Confidence 3
No 74
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.43 E-value=0.4 Score=47.10 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=78.0
Q ss_pred hhhCCchhHHHHHHHHhcCccccCC-cchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhH---HHhcchhHHHH
Q 004016 71 KPFGEAAFASQLLGGIALGPSLLSR-NQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGI---VKKSGKLAIVI 146 (779)
Q Consensus 71 ~rl~~P~iv~~IlaGiilGP~~lg~-~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~---l~~~~~~~~~i 146 (779)
+++++-...|-+++|+++|-. +. .|.+ -.....+.+.++|+.++++.+|++--++. +|+.+.+...+
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~~~-------~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~ 89 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGPIF-------LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL 89 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccCCC-------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 556667777999999999842 21 1111 13455677899999999999999988865 56677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHH-HHHhhhhHHHHHHHHHH
Q 004016 147 GVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVA-TLEATISFHVILANLTE 200 (779)
Q Consensus 147 a~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 200 (779)
++.-.++|.+++...++++.+. ......| .+=+.|++|.+....+.
T Consensus 90 ~~~i~~~~~~~~~~~~~~~~~l--------~~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 90 GVIITLVPLLIALVIGRYLFKL--------NPGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC--------CHHHHHHHHHccccCcHHHHHHHHh
Confidence 8888888888888777754432 2233333 34567888888776655
No 75
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.33 E-value=0.27 Score=57.99 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHH-HHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHH
Q 004016 288 ALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLL-ADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVE 366 (779)
Q Consensus 288 ~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l-~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~ 366 (779)
+++++..+++.+++.+|++.+++-.++|+++.....-.-.. ...+-.....+.+++.....|+++|+..+... +..+.
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~-~~~~~ 91 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPA-LGPAL 91 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHH-HHHHH
Confidence 34444555667788888888999999999887642110000 11222334678888888899999999887542 22222
Q ss_pred HHHHHHHHhhH-HHHHHHHHhcCCChHHHHHHHHHhhhhhhh
Q 004016 367 MVILIAGTVKT-FAIVIPCLYSKIPFMDALALGLLLNCRGIY 407 (779)
Q Consensus 367 ~iiv~~~~~K~-~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~ 407 (779)
.+....++.-+ +.++...+++++++.+++.+|..+++-...
T Consensus 92 ~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 92 SLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 22222222222 224445567799999999999987766543
No 76
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.6 Score=52.54 Aligned_cols=144 Identities=14% Similarity=0.077 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCC-CC---CchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchh
Q 004016 285 HLVALNVIVLVVALVGELTGQNSYLGPFILGITTPV-TP---PMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFN 360 (779)
Q Consensus 285 ~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~-~~---p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~ 360 (779)
.+..++..+...+.+.+.+|+++++|-.++|+++.+ +. ...++..+-+.++ =.-++...+|+++|+..+...
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHh
Confidence 345566666677799999999999999999999987 21 1233444444444 233445578999999888642
Q ss_pred hHHHHHHHHHHHHHhhHHHH--HHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHH
Q 004016 361 HFLAVEMVILIAGTVKTFAI--VIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMF 435 (779)
Q Consensus 361 ~~~~~~~iiv~~~~~K~~~~--~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll 435 (779)
..........+.+..-++.+ +... +++.++.+++.+|..+..-.. -+.+.+..|.|...++.-..++-..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~ 159 (397)
T COG0475 86 GRSVGLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVF 159 (397)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHH
Confidence 11102222222222222222 2223 579999999999988765432 234444556666665544444444433
No 77
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.28 E-value=0.7 Score=54.97 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=63.4
Q ss_pred HHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHH
Q 004016 65 AIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAI 144 (779)
Q Consensus 65 l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~ 144 (779)
...++.+.+|+..++|-.++|++++.+-... +-...++.+..+=+.++...+|+++|++.+...+...+
T Consensus 227 ~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~-----------~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il 295 (601)
T PRK03659 227 GSALFMDALGLSMALGTFIAGVLLAESEYRH-----------ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVL 295 (601)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcCCchHH-----------HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHH
Confidence 3345667889999999999999998532111 12334555666666777788999999998877654333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhh
Q 004016 145 VIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATI 189 (779)
Q Consensus 145 ~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 189 (779)
.+.+..++.=++.+++.+.+++. .+..++.+|..++.-
T Consensus 296 ~~~~~~l~~K~~~~~~~~~~~g~-------~~~~al~~g~~L~~~ 333 (601)
T PRK03659 296 ISVVVLVAVKGLVLYLLARLYGL-------RSSERMQFAGVLSQG 333 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhcc
Confidence 32222222222333333333321 246667777666543
No 78
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.16 E-value=0.23 Score=49.76 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChh-----HHHhcchhHHHHHHHHHHH
Q 004016 79 ASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKG-----IVKKSGKLAIVIGVGAFII 153 (779)
Q Consensus 79 v~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~-----~l~~~~~~~~~ia~~~~l~ 153 (779)
++.+++|+++|-..... ....+...+..+..++|.+|+++--+ .+|+.+++++.+.+..++-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888888432111 11225677888999999999988544 5677889999999999988
Q ss_pred HHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004016 154 PLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFY 230 (779)
Q Consensus 154 p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~ 230 (779)
+++.+.+++.++... ..+++.++.-+.= +.....+++|++ +.+.|.++.=+=++-+++++++.-++
T Consensus 69 Sllgg~l~~~ll~~~-------~~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 69 SLLGGLLASLLLGLS-------LKESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred HHHHHHHHHHHhcCC-------HHHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777422 3555555543321 111122335543 56788888777777777777666544
No 79
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.14 E-value=3.9 Score=44.58 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHhcch--hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccch--hh
Q 004016 286 LVALNVIVLVVALVGELTGQN--SYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF--NH 361 (779)
Q Consensus 286 ~~~il~~~l~~~~~se~lg~~--~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~--~~ 361 (779)
....+....+.+++.+.+++. .++|+++.+.++.-.....-.+-+.+. .+-.-+.-..+|.+++...+.. ..
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHHHHHH
Confidence 345556666778888888885 578888887777543211111212222 2222334567899998776643 23
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHH
Q 004016 362 FLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIII 441 (779)
Q Consensus 362 ~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~ 441 (779)
+...+...++.+..-.+.+++..++.++++.+++. .+.|-|.-|+.+.....+.+.---..+.++=+..+ ..+.|
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~~v--~~~~p 307 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQVVRLLFV--LLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HHHHH
Confidence 43445555555666778888889999999887643 46899999888877655533211122222212221 23456
Q ss_pred HHHHHhhc
Q 004016 442 PLVKLVYD 449 (779)
Q Consensus 442 plv~~l~~ 449 (779)
++.+++.|
T Consensus 308 ~~~r~~~r 315 (318)
T PF05145_consen 308 FIARWLRR 315 (318)
T ss_pred HHHHHHHH
Confidence 77776654
No 80
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.94 E-value=0.23 Score=53.46 Aligned_cols=116 Identities=15% Similarity=0.037 Sum_probs=82.7
Q ss_pred HHHHHhcchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhH
Q 004016 298 LVGELTGQNSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKT 377 (779)
Q Consensus 298 ~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~ 377 (779)
...+..|+++.+=|.+.|+++...++.+.+...-++. ....++.+=.++.|++++++++..-.+. .+.+.+..+..-+
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~~G~~-~v~~~~~~l~~t~ 107 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIADVGGS-GVLIIAITLSSTF 107 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHHcCcc-HHHHHHHHHHHHH
Confidence 3445566678888999999998665555455555554 3667788888899999999888653332 2333344455667
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhh
Q 004016 378 FAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRA 415 (779)
Q Consensus 378 ~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~ 415 (779)
+.+++.++++|+|++.+..+|..-+-=|.-.++...-.
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pv 145 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPV 145 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCc
Confidence 77888888999999999999998777777666655443
No 81
>PRK03818 putative transporter; Validated
Probab=94.92 E-value=0.65 Score=54.51 Aligned_cols=125 Identities=20% Similarity=0.266 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHH-HhhhCCchhHHHHHHHHhcCccc--cCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccCh
Q 004016 57 LLVTILTYAIQLL-LKPFGEAAFASQLLGGIALGPSL--LSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDK 133 (779)
Q Consensus 57 ~lil~~~~l~~~l-l~rl~~P~iv~~IlaGiilGP~~--lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~ 133 (779)
++.+.+..+++.+ ++.+++- ..|-+++|+++|-.. +|. + -.......+.++|+.+|+|.+|++.-+
T Consensus 12 ~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~~~~---------~-~~~~~~~~~~~~gl~lFv~~vGl~~Gp 80 (552)
T PRK03818 12 ALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQFGL---------T-LDSDMLHFIQEFGLILFVYTIGIQVGP 80 (552)
T ss_pred HHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccccCc---------c-cChHHHHHHHHHHHHHHHHHHhhcccH
Confidence 3333444444432 2223344 478889999988421 111 0 123456678999999999999999998
Q ss_pred hH---HHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHH-HHHhhhhHHHHHHHHHHc
Q 004016 134 GI---VKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVA-TLEATISFHVILANLTEL 201 (779)
Q Consensus 134 ~~---l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el 201 (779)
+. +|+.+.+...+++.-.++|.++++.+.+++.. ......| .+-+.|++|.+....+..
T Consensus 81 ~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 81 GFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGI---------PLPVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHhhccccccHHHHHHHHHH
Confidence 76 45666667777777777777776666444432 2223333 345778888887766543
No 82
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.72 E-value=1.8 Score=43.19 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhHHHHH--H-HHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhh-hhHHH
Q 004016 118 VGLIFMFFTLSARIDKGIVKKSGKLAIVIG--V-GAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEAT-ISFHV 193 (779)
Q Consensus 118 lGl~~llF~~Gle~d~~~l~~~~~~~~~ia--~-~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~-Ts~~v 193 (779)
+.+.+.||..|+++|++++++..|+...+. + .++++.=++++++++.+.+. ......|..+.. +.-+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~--------~~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL--------SPALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHhcCCcHH
Confidence 457789999999999999988776544332 2 23333333444444233221 122333333221 11122
Q ss_pred HHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004016 194 ILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFY 230 (779)
Q Consensus 194 v~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~ 230 (779)
.+...+.+. +.+.. ++.+...++.+.+.++.-+.
T Consensus 74 ~s~~~t~l~--~Gd~~-ls~~lt~istll~~~~~P~~ 107 (187)
T PF01758_consen 74 ASNVFTYLA--GGDVA-LSVSLTLISTLLAPFLMPLL 107 (187)
T ss_dssp HHHHHHHHT--T--HH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcc-cccceeeHHHHHHHHHHHHH
Confidence 233334432 33332 66666777887777776555
No 83
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.65 E-value=7.6 Score=41.65 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhhccChhHHHhcchh--HHHHHHH-HH-HHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHH-hhhhH
Q 004016 117 CVGLIFMFFTLSARIDKGIVKKSGKL--AIVIGVG-AF-IIPLIVSILTTLFIRDGLELDDELRSTLPMVATLE-ATISF 191 (779)
Q Consensus 117 ~lGl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l-s~Ts~ 191 (779)
-..+.+.||..|+.++.+++++..++ ....+.. .+ +.|.+. +.++..++. ......|.++ +.+..
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l---------~~~~~~glvL~~~~P~ 80 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKL---------PPELAVGVLIVGCCPG 80 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCC---------CHHHHHHHHheeeCCC
Confidence 33488899999999999999887663 3333333 33 445543 445544431 1122333332 22222
Q ss_pred HHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc----cchhHHHHHHHHHHHHHHHHHHHHHH
Q 004016 192 HVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAPTFYIYASENAL-VG----ITRRTVFLMNVSVIVMVIIIVFVVRP 266 (779)
Q Consensus 192 ~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~-~~----~~~~~~~~~~~~~i~~~~~~~~v~r~ 266 (779)
+..+.++.++---| ..++.+...++-+++.+.+-+. ..+..+. .+ .+....... +..++.-+..+.+.|.
T Consensus 81 ~~~s~v~t~~~~gn---~~la~~~~~~stlls~vt~Pl~-l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~ 155 (286)
T TIGR00841 81 GTASNVFTYLLKGD---MALSISMTTCSTLLALGMMPLL-LYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKH 155 (286)
T ss_pred chHHHHHHHHhCCC---HhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 22223344432122 3456666667777777766554 3222210 01 112223334 4444444555566665
Q ss_pred HHHHHHHh
Q 004016 267 IIFWMMRK 274 (779)
Q Consensus 267 ~~~~l~~~ 274 (779)
...+..++
T Consensus 156 ~~p~~~~~ 163 (286)
T TIGR00841 156 KLPQIAKI 163 (286)
T ss_pred HhHHHHHH
Confidence 55444433
No 84
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.45 E-value=2.6 Score=45.96 Aligned_cols=118 Identities=11% Similarity=0.100 Sum_probs=74.9
Q ss_pred cchhhHHHHHHHhhcCCCCCchhHHHHHHHHH---HHHhhHHHHHHHhccc-ccccccchh-hHHHHHHHHHHHHHhhHH
Q 004016 304 GQNSYLGPFILGITTPVTPPMGSLLADKIQYF---VWVAFIPCFIINTGRR-VDLYSIQFN-HFLAVEMVILIAGTVKTF 378 (779)
Q Consensus 304 g~~~~lGaflaGL~l~~~~p~~~~l~~kl~~~---~~~lflPlFF~~~G~~-~d~~~l~~~-~~~~~~~iiv~~~~~K~~ 378 (779)
++|+..-..++|.++....-..+++.++...+ ...-+.+..++-+|+. +|++.+... ++. .+++++...++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHH
Confidence 56777778888888776654556666655443 2333334444445665 777666432 233 34555566667788
Q ss_pred HHHHHHHhcCCChHH-HHHHHHHhhhhh-hhHHHHHHhhhhcCCCC
Q 004016 379 AIVIPCLYSKIPFMD-ALALGLLLNCRG-IYDIQVFTRAKQRLQIT 422 (779)
Q Consensus 379 ~~~l~~~~~~~~~~~-~l~lg~~l~~kG-~~~l~~~~~~~~~~~i~ 422 (779)
++++.+++.|+=+-| ++.-|+.|+.+| .=|+++.+.+.+.+++.
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 888999999875555 555566777664 55688888777777664
No 85
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=94.43 E-value=0.3 Score=53.81 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=81.0
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCC-CCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHh-
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPP-QSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQT- 548 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~-~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~- 548 (779)
-|||+|+...++....++-+-.++.. +...+++++|+++...... . .+ ......+++++..++..+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~----~--~~-----~~~~~~eelle~~~~~~~~~ 74 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP----E--GQ-----DELAAAEELLERVEVWATED 74 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc----c--hh-----HHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999988888777654 2356899999987432110 0 00 0112345566666655432
Q ss_pred ---cCcceEEEEEEEec-----cCCChHHHHHHHHhhcCccEEEecccc---CCChhhHHHHHHhhhcCCCc
Q 004016 549 ---NKAYVSVQCFTAVA-----PYASMHDDICSMAFQKATSLIIFPFLK---TEPTLTKKVINNVLSMSPCS 609 (779)
Q Consensus 549 ---~~~~v~v~~~t~vs-----~~~~m~~dI~~~A~e~~~~lIilp~h~---~~~~~~~~~n~~vl~~apCs 609 (779)
...+++++...... ..-+.++.|++.|+|.++|+|||+=.. ....+++.+-.. |.++-|+
T Consensus 75 l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~~~~-~~~~~~~ 145 (357)
T PRK12652 75 LGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPLERE-LARAGIT 145 (357)
T ss_pred hhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchHHHH-HHhcCCc
Confidence 11367777655442 114789999999999999999999655 223455555544 4555555
No 86
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.15 E-value=1.2 Score=48.61 Aligned_cols=114 Identities=12% Similarity=-0.001 Sum_probs=71.9
Q ss_pred hcchhhHHHHHHHhhcCCCC--CchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHH-
Q 004016 303 TGQNSYLGPFILGITTPVTP--PMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFA- 379 (779)
Q Consensus 303 lg~~~~lGaflaGL~l~~~~--p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~- 379 (779)
.++++.+=|.+.|+++.|.. +..+....-++ +....++-+=.+..|.++++.++....+.. +.+.+.....-+..
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~-l~~~~~~v~~~~~~~ 106 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADVGPNE-IVADTLILTSTFFLT 106 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHhhHHH-HHHHHHHHHHHHHHH
Confidence 46777778889999998842 12222222222 345566667788899999998885433332 22222222333444
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhc
Q 004016 380 IVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQR 418 (779)
Q Consensus 380 ~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~ 418 (779)
.++..|.+|++++.+..+|...+-=|.-.++...-..+.
T Consensus 107 ~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A 145 (335)
T TIGR00698 107 VFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKA 145 (335)
T ss_pred HHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCC
Confidence 444457899999999999998887777766655544433
No 87
>PRK04972 putative transporter; Provisional
Probab=93.54 E-value=0.52 Score=55.39 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHH-HhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChh
Q 004016 56 MLLVTILTYAIQLL-LKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKG 134 (779)
Q Consensus 56 l~lil~~~~l~~~l-l~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~ 134 (779)
+++.+.+..+++.+ ++++++-...|-+++|+++|-.... . | ..+.++|+.+|+|.+|++.-++
T Consensus 17 lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~-~--------~-------~~~~~~gl~lF~~~vG~~~Gp~ 80 (558)
T PRK04972 17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS-I--------N-------TDALNLGFMLFIFCVGVEAGPN 80 (558)
T ss_pred HHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC-C--------C-------hHHHHHHHHHHHHHHhhhhhHH
Confidence 33334444444443 4556677778999999999953221 1 1 1245899999999999999987
Q ss_pred H---HHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHH-HHHhhhhHHHHHHHHHH
Q 004016 135 I---VKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVA-TLEATISFHVILANLTE 200 (779)
Q Consensus 135 ~---l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 200 (779)
. +|+.+.+...+++...+++++++..++++++. ......| .+-+.|++|.+......
T Consensus 81 F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~G~~aGa~T~tp~l~~a~~~ 141 (558)
T PRK04972 81 FFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGW---------DIGLTAGMLAGSMTSTPVLVGAGDT 141 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHhhccccCcHHHHHHHHH
Confidence 6 46666677777777777777776666655432 1223333 34466777777766543
No 88
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.14 E-value=0.78 Score=53.99 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=55.6
Q ss_pred HHHHHHHHHHH-HhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 004016 59 VTILTYAIQLL-LKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVK 137 (779)
Q Consensus 59 il~~~~l~~~l-l~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~ 137 (779)
++.+.++++.+ .+.+++-.+.|-+++|+++|-.... +| +.+.++|+++|+|.+|++.-++.++
T Consensus 18 ~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i~---------------~~v~~~gl~lFvy~vG~~~Gp~Ff~ 81 (562)
T TIGR03802 18 SLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-ID---------------PGVKAVFFALFIFAIGYEVGPQFFA 81 (562)
T ss_pred HHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-CC---------------hHHHHHHHHHHHHHhhhccCHHHHH
Confidence 33334444433 3446677788999999999954221 11 1367799999999999999998765
Q ss_pred hc---chhHHHHHHHHHHHHHHHHHHHHHHH
Q 004016 138 KS---GKLAIVIGVGAFIIPLIVSILTTLFI 165 (779)
Q Consensus 138 ~~---~~~~~~ia~~~~l~p~~~g~~~~~~l 165 (779)
.- +.+-...++.-.+..+++.+++++++
T Consensus 82 ~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~ 112 (562)
T TIGR03802 82 SLKKDGLREIILALVFAVSGLITVYALAKIF 112 (562)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 44444444444443444444444433
No 89
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.94 E-value=0.91 Score=53.43 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=77.8
Q ss_pred hhCCchhHHHHHHHHhcCccccCCc-chhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhH---HHhcchhHHHHH
Q 004016 72 PFGEAAFASQLLGGIALGPSLLSRN-QELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGI---VKKSGKLAIVIG 147 (779)
Q Consensus 72 rl~~P~iv~~IlaGiilGP~~lg~~-~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~---l~~~~~~~~~ia 147 (779)
++.+-...|-+++|+++|- ++.. |.+ +-.| ......+.++|+.+|++.+|++--++. +++.+.+...+|
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~--~~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTF--GNIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcc--eecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 4445567789999999984 2221 110 0012 345667899999999999999988865 566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHH-HHHhhhhHHHHHHHHHHcC
Q 004016 148 VGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVA-TLEATISFHVILANLTELK 202 (779)
Q Consensus 148 ~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el~ 202 (779)
..-.++|.++++.+++++.+. ......| .+-+.|++|.+.......+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~t~~l~~a~~~~~ 532 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVLKY--------DPALLLGALAGARTATPALGAVLERAG 532 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--------CHHHHHHHhhccCCCcHHHHHHHHhcC
Confidence 777778888877777554432 2234444 4467889888877665443
No 90
>PRK10490 sensor protein KdpD; Provisional
Probab=92.78 E-value=0.59 Score=58.30 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=83.5
Q ss_pred cccceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHH
Q 004016 468 HAELRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQ 547 (779)
Q Consensus 468 ~~e~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 547 (779)
....|||||+....+...+|+-+..++.. .....+++|+.....+.. .....+++.+.++ .++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~-~~a~~~~l~V~~~~~~~~---------------~~~~~~~l~~~~~-lA~ 310 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAAR-LGSVWHAVYVETPRLHRL---------------PEKKRRAILSALR-LAQ 310 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHh-cCCCEEEEEEecCCcCcC---------------CHHHHHHHHHHHH-HHH
Confidence 35678999999999999999988877765 344679999853211110 1122345566664 554
Q ss_pred hcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCCChh-hHHHHHHhhhcCC-CceEEEe
Q 004016 548 TNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTEPTL-TKKVINNVLSMSP-CSIGLLY 614 (779)
Q Consensus 548 ~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~-~~~~n~~vl~~ap-CsVgIlv 614 (779)
...+. +.. .. .+++.+.|.+.|++++++.||||=.+..... -+++.+++++.+| -+|=|.-
T Consensus 311 ~lGa~--~~~--~~--~~dva~~i~~~A~~~~vt~IViG~s~~~~~~~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 311 ELGAE--TAT--LS--DPAEEKAVLRYAREHNLGKIIIGRRASRRWWRRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred HcCCE--EEE--Ee--CCCHHHHHHHHHHHhCCCEEEECCCCCCCCccCCCHHHHHHHhCCCCCEEEEe
Confidence 32333 332 22 3689999999999999999999975522222 2479999999999 5666653
No 91
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.63 E-value=0.61 Score=45.06 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHH---Hhcc-hhHHHHHHH
Q 004016 74 GEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIV---KKSG-KLAIVIGVG 149 (779)
Q Consensus 74 ~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l---~~~~-~~~~~ia~~ 149 (779)
++-...|-+++|+++|-. +....+. +-. .......+.++|+.+|++.+|++--.+.+ |+.+ -....++..
T Consensus 20 ~LG~~~G~L~vgL~~G~~--~~~~p~~-~~~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~ 93 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHF--GATGPLT-WYI---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGAL 93 (154)
T ss_pred EecccHHHHHHHHHHHhc--cccCCcc-eec---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence 333477899999999852 3211000 001 13456778899999999999999988765 4433 123334444
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHH-HHHhhhhHHHHHHHHHHcC
Q 004016 150 AFIIPLIVSILTTLFIRDGLELDDELRSTLPMVA-TLEATISFHVILANLTELK 202 (779)
Q Consensus 150 ~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el~ 202 (779)
-.++|.+++..+...+.+. ......| .+=+.|++|.+....+..+
T Consensus 94 v~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 94 ITVVPTLLVAVALIKLLRI--------NYALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHHHhCC--------CHHHHHHHHhccccChHHHHHHHHHhc
Confidence 4455555555555444332 2233444 3457888888877666543
No 92
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=92.53 E-value=2.4 Score=51.19 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHH-h-cCCChHHHHHHHHHhhhhhhh
Q 004016 336 VWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCL-Y-SKIPFMDALALGLLLNCRGIY 407 (779)
Q Consensus 336 ~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~-~-~~~~~~~~l~lg~~l~~kG~~ 407 (779)
+..+.+++-....|++++...+... |..+..+++.++..-++.+.+.++ + .++++..++.+|.++.+-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~-wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKH-WVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 3566777777788999998877532 433333333333444444444444 3 499999999999999987754
No 93
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.51 E-value=1.4 Score=51.45 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCch-hHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHH
Q 004016 289 LNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMG-SLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEM 367 (779)
Q Consensus 289 il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~-~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~ 367 (779)
.++.+.+...+++.+++++.++-+++|+++...+... -.+.. +....+++|......|+++|...+... +..+..
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~-~~~i~~ 81 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELREN-FRPIAL 81 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Confidence 3444444556677777777777777777775321111 01111 122457888888899999999887543 222222
Q ss_pred HHHHHHH-hhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHH
Q 004016 368 VILIAGT-VKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDI 409 (779)
Q Consensus 368 iiv~~~~-~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l 409 (779)
+.+...+ .-.+.++...+..++|+..++.+|.++++...+..
T Consensus 82 la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 82 IAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 2222222 22233333334678999999999999998876553
No 94
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=92.08 E-value=4.2 Score=50.27 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=30.3
Q ss_pred CCcccceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeec
Q 004016 466 ESHAELRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEY 510 (779)
Q Consensus 466 ~~~~e~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel 510 (779)
+.+...||.+..-+-.+=+..+.++..++.. ..+.+.++|.+..
T Consensus 626 ~~~~~~~v~~~F~GG~DDREALa~a~rma~~-p~v~lTVirf~~~ 669 (832)
T PLN03159 626 SNQVSHHVAVLFFGGPDDREALAYAWRMSEH-PGITLTVMRFIPG 669 (832)
T ss_pred ccccceeEEEEecCCcchHHHHHHHHHHhcC-CCeEEEEEEEEcc
Confidence 3445678888886555566667777666643 4578899999854
No 95
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.00 E-value=5.9 Score=38.38 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhcch--hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccch--hhHHHH
Q 004016 290 NVIVLVVALVGELTGQN--SYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF--NHFLAV 365 (779)
Q Consensus 290 l~~~l~~~~~se~lg~~--~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~--~~~~~~ 365 (779)
+....+.+++.+.+|+. .++|+++++.++.-.....-.+-+.+. .+-.-+.-..+|.+++...+.. ..+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44555666677888886 788998888877643211112222222 2223344567899999877754 234434
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhh
Q 004016 366 EMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRA 415 (779)
Q Consensus 366 ~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~ 415 (779)
+...+..+..-++.+++..+..+++..+++ ++ ..|-|.-++......
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~ 126 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAE 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHH
Confidence 555555666677888889999999998885 33 578888887776553
No 96
>COG2855 Predicted membrane protein [Function unknown]
Probab=90.87 E-value=27 Score=37.90 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=70.2
Q ss_pred HHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHH
Q 004016 69 LLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGV 148 (779)
Q Consensus 69 ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~ 148 (779)
.....++|..+--|+.|+++|.. ...++ ...+ .-.-.-+.+-++|+++ .|.+++++++...+.+.+.+-.
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l--~~~~~---~~~~-GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~ 100 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGIL--PQIPA---QTSA-GITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIA 100 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhcc--ccchh---hhcc-chhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHH
Confidence 34557799999999999999932 22221 0010 1122345566778874 7999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhh
Q 004016 149 GAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEAT 188 (779)
Q Consensus 149 ~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 188 (779)
..+..++++++.++.+++.. +..++++|.--|+
T Consensus 101 ~~l~~t~~~~~~lg~~lgld-------~~~a~Lia~GssI 133 (334)
T COG2855 101 ITLSSTFLFAYFLGKLLGLD-------KKLALLIAAGSSI 133 (334)
T ss_pred HHHHHHHHHHHHHHHHhCCC-------HHHHHHHHccchh
Confidence 88888888777777755422 4566666654444
No 97
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=89.90 E-value=4.2 Score=39.43 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhhCCc--hhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHH
Q 004016 59 VTILTYAIQLLLKPFGEA--AFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIV 136 (779)
Q Consensus 59 il~~~~l~~~ll~rl~~P--~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l 136 (779)
.+.++.+.+.+++++|+| ..+|-++++.++.- .|..+ .-+| ..+.+++.+++--.+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~----~~~P-------~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE----ITLP-------PWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc----CCCC-------HHHHHHHHHHHHHHHHccCCHHHH
Confidence 455677788999999998 66777777766652 22111 0122 245566777777899999999998
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004016 137 KKSGKLAIVIGVGAFIIPLIVSILTTLFIRDG 168 (779)
Q Consensus 137 ~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~ 168 (779)
++..+... .++...+....++...++++.+.
T Consensus 70 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 70 AELKRLWP-AALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665443 34445555556666666666553
No 98
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=89.59 E-value=22 Score=36.39 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhh
Q 004016 325 GSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCR 404 (779)
Q Consensus 325 ~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~k 404 (779)
++.+..-+++-+-.+-.|+| =+.+.+. ..|.....-++++.+.-++.+++.++.++.+.. +. ..+.||
T Consensus 61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik-~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~--~Sl~Pk 128 (230)
T COG1346 61 GQWINFLLGPATVALAVPLY-------KQRHLIK-RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LI--LSLLPK 128 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HH--HHhccc
Confidence 34455555655556666766 2222232 356666666677777788889999999998854 22 346899
Q ss_pred hhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHh
Q 004016 405 GIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLV 447 (779)
Q Consensus 405 G~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l 447 (779)
....=+...+..+.|-+.+-+-..++++-++.+.+.+++.|.+
T Consensus 129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 129 SVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999989988887777777777777777777888775
No 99
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.01 E-value=20 Score=40.24 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHhh--hCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhcc
Q 004016 54 LPMLLVTILTYAIQLLLKP--FGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARI 131 (779)
Q Consensus 54 ~~l~lil~~~~l~~~ll~r--l~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~ 131 (779)
..+.+...+++.+...++. +.+|..++.+++|+++.... ... .. . .-.++.++.++++++-+++-.+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~---~~--~-~~~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFK---KF--P-WVAERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHh---Cc--c-ccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455555566666666665 77999999999999998532 111 00 0 01244899999999999998888899
Q ss_pred ChhHHHhcchhHHHHHHHHHHHHHHHHHHHHH-HHhhcCccchhhhhhHHHHHHHHhhhhHHH--HHHHHHHcCccCChh
Q 004016 132 DKGIVKKSGKLAIVIGVGAFIIPLIVSILTTL-FIRDGLELDDELRSTLPMVATLEATISFHV--ILANLTELKLLNSEI 208 (779)
Q Consensus 132 d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~-~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~v--v~~iL~el~l~~s~~ 208 (779)
++..+....-....+.+.+.+...+....+.+ .+++.++ . .-..+-..|..+..|+.++ ...+-+++|-.+.-.
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd--a-aV~~ag~~G~~lGatptaianm~av~~~yg~s~~af 371 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD--A-AVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAF 371 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH--H-HHHhcccccccccchHHHHHHHHHHHhccCCCCcce
Confidence 99999999999999988888887765543333 2333221 0 0122234444554444333 334445666544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004016 209 GRLALSSSLLSSLIGWFAPTF 229 (779)
Q Consensus 209 g~l~ls~a~i~D~~~~ill~~ 229 (779)
=-.=+-.+.+-|+....++..
T Consensus 372 ~ivPlvgaf~id~~n~~~i~~ 392 (398)
T TIGR00210 372 IVVPLVGAFFIDIINALVIKQ 392 (398)
T ss_pred ehhhhHHHHHHHHhhHHHHHH
Confidence 333445577777777655443
No 100
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.33 E-value=8 Score=41.56 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=54.8
Q ss_pred hHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHH
Q 004016 78 FASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIV 157 (779)
Q Consensus 78 iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~ 157 (779)
.+--|+.|+++|+. .+++.+.+-| =-.+++.|..|..|.++|++.+.+.+.+.+.+++..+.+++.+
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~---------Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTK---------GGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhc---------cceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 55667778888762 1122222212 1223788899999999999999999999999999988888888
Q ss_pred HHHHHHHH
Q 004016 158 SILTTLFI 165 (779)
Q Consensus 158 g~~~~~~l 165 (779)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 87777666
No 101
>PRK10490 sensor protein KdpD; Provisional
Probab=86.75 E-value=2.7 Score=52.53 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=76.8
Q ss_pred cceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCC-ccchhhHHHHHHHhhhhcCCCCCEEEEEEeecC
Q 004016 627 CRRVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSD-FIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEE 705 (779)
Q Consensus 627 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~-~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~ 705 (779)
. ||+|..-|+|..+..+..|+|||+..++.++++++..++....+ +.++.+.+ .+ ++.++-.. . +.+. .
T Consensus 251 e-riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~-~~-~lA~~lGa--~--~~~~---~ 320 (895)
T PRK10490 251 D-AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILS-AL-RLAQELGA--E--TATL---S 320 (895)
T ss_pred C-eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHH-HH-HHHHHcCC--E--EEEE---e
Confidence 5 89999999999999999999999999999999999865322111 11222222 22 23333221 1 2222 3
Q ss_pred hHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEE
Q 004016 706 GFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVI 769 (779)
Q Consensus 706 ~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVv 769 (779)
+.|+.+.|-+.++ +-+-+|+|++.+. -| + --|-+-|.|.... .+.-|.||
T Consensus 321 ~~dva~~i~~~A~~~~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~~--~~idi~iv 372 (895)
T PRK10490 321 DPAEEKAVLRYAREHNLGKIIIGRRASR---------RW--W-RRESFADRLARLG--PDLDLVIV 372 (895)
T ss_pred CCCHHHHHHHHHHHhCCCEEEECCCCCC---------CC--c-cCCCHHHHHHHhC--CCCCEEEE
Confidence 4566666666655 6788999998753 25 2 1356777777763 44577777
No 102
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=86.17 E-value=3.7 Score=44.08 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=72.2
Q ss_pred HHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhh
Q 004016 336 VWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRA 415 (779)
Q Consensus 336 ~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~ 415 (779)
-++++=|+-|.-+|.-+|++-+-...+. .++-..+-++ +..+++.+...+++.+|+-.+|.+=..-|-.++.+.+.-
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANPKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCHHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 3678888889999999999887543332 1122222222 345666677779999999999998888888887776653
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhcccch
Q 004016 416 KQRLQITDESFAIMVITAMFQSAIIIPLVKLVYDSSRK 453 (779)
Q Consensus 416 ~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~p~~~ 453 (779)
- -.++.+-.-..-.-++++ =.+.||++|.+-.+++|
T Consensus 144 A-p~LlgpIaVaAYsYMaLv-PiiqPpimklLttkkeR 179 (360)
T PF03977_consen 144 A-PHLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKER 179 (360)
T ss_pred h-HHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHHH
Confidence 1 122222222222233333 56789999998755444
No 103
>PRK04972 putative transporter; Provisional
Probab=85.95 E-value=6.2 Score=46.49 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=77.7
Q ss_pred hCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhH---HHhcchhHHHHHHH
Q 004016 73 FGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGI---VKKSGKLAIVIGVG 149 (779)
Q Consensus 73 l~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~ 149 (779)
+++-.--|.+++|+++|- ++...... +-.| ......+.++|+.+|+..+|+.--.+. +++.+.+.+.+|..
T Consensus 408 ~~LG~agG~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~ 481 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGF--LRANHPTF-GYIP---QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLI 481 (558)
T ss_pred eeccccHHHHHHHHHHHh--ccccCCCc-eeeC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 344456689999999984 23321110 0112 455678999999999999999877754 46667777778888
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHH-HHHhhhhHHHHHHHHHHcC
Q 004016 150 AFIIPLIVSILTTLFIRDGLELDDELRSTLPMVA-TLEATISFHVILANLTELK 202 (779)
Q Consensus 150 ~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el~ 202 (779)
-.++|.++++.+++++.+. .....+| .+-+.|++|.+.......+
T Consensus 482 ~t~~~~~~~~~~~~~~~k~--------~~~~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 482 VSLVPVVICFLFGAYVLRM--------NRALLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHHHHHHHHHHHHHcC--------CHHHHHHHHhCCCCCcHHHHHHHhhcC
Confidence 8888888888888666543 2234444 5567888888876654433
No 104
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=85.21 E-value=49 Score=34.22 Aligned_cols=109 Identities=8% Similarity=0.027 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhh
Q 004016 327 LLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGI 406 (779)
Q Consensus 327 ~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~ 406 (779)
.+..-+.+-+-.+-+|+| -+.+.+. ..|..+.+-++++.+.-+++++..+++++.+.. +-..|.+|..
T Consensus 66 ~l~~lLgPAtVALAvPLY-------~q~~~lk-~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSV 133 (232)
T PRK04288 66 IISFFLEPATIAFAIPLY-------KKRDVLK-KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAA 133 (232)
T ss_pred HHHHHHHHHHHHHHHHHH-------HhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhh
Confidence 344444555555566665 2222232 345555556666677778888888999888864 3344789999
Q ss_pred hHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHh
Q 004016 407 YDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLV 447 (779)
Q Consensus 407 ~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l 447 (779)
-.=+...+..+.|-+..-+-...+++-++-..+.++++|++
T Consensus 134 TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 134 TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888887666666666666677667777777775
No 105
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=83.97 E-value=22 Score=38.92 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=72.2
Q ss_pred HHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHh
Q 004016 335 FVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTR 414 (779)
Q Consensus 335 ~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~ 414 (779)
+-++++=|+-|.-+|.-+|++-+-...+...+ .-..+-++ +..+++.+...+++.+|+-.+|.+=+.-|-.++.+.+.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll-~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~k 179 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASIT-VALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLI 179 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHH-HHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHh
Confidence 45678888899999999999887543232111 01222222 23455566677999999999999888888888777665
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhcccch
Q 004016 415 AKQRLQITDESFAIMVITAMFQSAIIIPLVKLVYDSSRK 453 (779)
Q Consensus 415 ~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~p~~~ 453 (779)
-- -+++..-.-..-.-++++ =.+.||++|.+-.+++|
T Consensus 180 LA-p~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER 216 (399)
T TIGR03136 180 LA-KDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYR 216 (399)
T ss_pred hh-hHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHH
Confidence 22 223333222222233333 56789999998755444
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=83.91 E-value=7.4 Score=43.92 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhccChhH---HHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHH-HHhhhhHH
Q 004016 117 CVGLIFMFFTLSARIDKGI---VKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVAT-LEATISFH 192 (779)
Q Consensus 117 ~lGl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~ 192 (779)
++|+++|.+.+|+|--+.. +|+.+++-..+++.- ++.+..+++.+++.+. +...+..|. .-+.||+|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~-----~~~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG-----IDLGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC-----CCHHHhhhhhcccccCCc
Confidence 8999999999999999875 678888877665554 3444455556655443 223333332 33556666
Q ss_pred HHH---HHHHHcCc
Q 004016 193 VIL---ANLTELKL 203 (779)
Q Consensus 193 vv~---~iL~el~l 203 (779)
... .+++|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 655 46666664
No 107
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=83.70 E-value=11 Score=37.59 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHH-------HHHH
Q 004016 53 FLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLI-------FMFF 125 (779)
Q Consensus 53 l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~-------~llF 125 (779)
+..+.++..++..+..-+.+=|++.----|+.|+++.-.+ |.... -++....+..++-+|++ |-.-
T Consensus 18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIv 90 (254)
T TIGR00808 18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAIV 90 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHHH
Confidence 3334444444444444444445666666777787775211 11100 01223334444444433 2233
Q ss_pred HHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004016 126 TLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGL 169 (779)
Q Consensus 126 ~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~ 169 (779)
.-..|.|.+++||.+.....--+.+.++||+.|..+++.++...
T Consensus 91 aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 91 ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56779999999999998887778899999999999999987643
No 108
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=83.59 E-value=5.2 Score=47.96 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=79.5
Q ss_pred cccceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHH
Q 004016 468 HAELRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQ 547 (779)
Q Consensus 468 ~~e~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 547 (779)
....|||+|+.....-..+++-+..++.. .....+++|+..-..+.. ...+.+++-..++ .++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~-~~a~~~av~v~~~~~~~~---------------~~~~~~~l~~~~~-Lae 308 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR-LHAKWTAVYVETPELHRL---------------SEKEARRLHENLR-LAE 308 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH-hCCCeEEEEEeccccccc---------------cHHHHHHHHHHHH-HHH
Confidence 44579999999888888888887777765 223468888864321111 0112234444444 343
Q ss_pred hcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCC---ChhhHHHHHHhhhcCC-CceEEE
Q 004016 548 TNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE---PTLTKKVINNVLSMSP-CSIGLL 613 (779)
Q Consensus 548 ~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~---~~~~~~~n~~vl~~ap-CsVgIl 613 (779)
+-.+ +..+..+ .++.+.|.+.|++.+++-||+|=++.. ....+++.+++++++| -+|-|.
T Consensus 309 ~lGa----e~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 309 ELGA----EIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred HhCC----eEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEe
Confidence 3222 3334455 699999999999999999999976522 2234788899998888 444443
No 109
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=81.87 E-value=36 Score=36.95 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=77.8
Q ss_pred hCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHH-
Q 004016 73 FGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAF- 151 (779)
Q Consensus 73 l~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~- 151 (779)
++-|.+++.++ |+++... |.. .|.--.+.++.+++...-+-||..|+.++.+.+++..+........-.
T Consensus 180 ~~nP~iia~i~-Gl~~~~~--~i~-------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPLL-SVILSLV--GFK-------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHHH-HHHHHHH--hhc-------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 57888887654 5666543 221 243457789999999999999999999999888777666665555544
Q ss_pred HHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHH-cCccCChhHHHHHHHHHHHHHHHHHHHHH
Q 004016 152 IIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTE-LKLLNSEIGRLALSSSLLSSLIGWFAPTF 229 (779)
Q Consensus 152 l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~e-l~l~~s~~g~l~ls~a~i~D~~~~ill~~ 229 (779)
+.|.+. +.+...+. .+ ....-.....+...+++...++.+ +| .+. +.+-+...++-+++.+.+.+
T Consensus 250 l~P~i~-~~~~~~~~--l~------~~~~~~~vl~aa~P~a~~~~i~A~~y~-~~~---~~aa~~v~~sT~ls~~tlp~ 315 (321)
T TIGR00946 250 VQPAVM-AGISKLIG--LR------GLELSVAILQAALPGGAVAAVLATEYE-VDV---ELASTAVTLSTVLSLISLPL 315 (321)
T ss_pred HHHHHH-HHHHHHhC--CC------hHHHHHHHHHHcCChhhHHHHHHHHhC-CCH---HHHHHHHHHHHHHHHHHHHH
Confidence 455544 33333332 11 122233344444455555555544 44 232 44444444555555544433
No 110
>PRK03818 putative transporter; Validated
Probab=81.76 E-value=29 Score=40.95 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=71.0
Q ss_pred hHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHh----cchhHHHHHHHHHHH
Q 004016 78 FASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKK----SGKLAIVIGVGAFII 153 (779)
Q Consensus 78 iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~l~ 153 (779)
--|-+++|+++|- ++...... +-.| ......+.++|+.+|+..+|++--.+.+.. .+.+...+|..-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLY-WFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCce-eecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4679999999984 23211000 1122 345667889999999999999888776533 456667777777788
Q ss_pred HHHHHHHHHHHHhhcCccchhhhhhHHHHH-HHHhhhhHHHHHHHH
Q 004016 154 PLIVSILTTLFIRDGLELDDELRSTLPMVA-TLEATISFHVILANL 198 (779)
Q Consensus 154 p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL 198 (779)
|.+++..+++++.+. ......| .+-+.|++|.+....
T Consensus 477 ~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 477 PLLIVGILARMLAKM--------NYLTLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHhccCCCcHHHHHHh
Confidence 888888777655443 2234444 456788888886653
No 111
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=80.82 E-value=28 Score=39.61 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=48.2
Q ss_pred HhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhc--CCChHHHHHHHHHhhhhhhhHHHHH
Q 004016 338 VAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYS--KIPFMDALALGLLLNCRGIYDIQVF 412 (779)
Q Consensus 338 ~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~--~~~~~~~l~lg~~l~~kG~~~l~~~ 412 (779)
.+++|+-....|+++|...+... +..+..+.....+...++.....++. ++|+..++.+|.++++-.-+.+.-.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~-~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i 139 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRV-WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPI 139 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHH
Confidence 67777777788999999888643 22223333333333444444444444 8999999999999998776655443
No 112
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=79.82 E-value=3.8 Score=41.10 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHH
Q 004016 365 VEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFT 413 (779)
Q Consensus 365 ~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~ 413 (779)
.+.+-+..+++-++++++.+++.++|++|++.++..++=-..-...+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4556666778899999999999999999999999887665555555544
No 113
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=78.27 E-value=5 Score=42.20 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=58.4
Q ss_pred CccHHHHHHHHHHHhcCCC-eEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEE-E--eecChHHHHHH
Q 004016 637 GADDREALALGARMGRNPS-IHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVE-E--GVEEGFETLRI 712 (779)
Q Consensus 637 G~ddreAL~~a~rma~~~~-v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e-~--~v~~~~e~~~~ 712 (779)
.|.|+-|++.|.|+.++.+ .++|++.+-+++. -+++.+++.... +-++....+ . .-.|...|..+
T Consensus 35 N~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a---------~~~~~lr~aLAm--GaD~avli~d~~~~g~D~~~tA~~ 103 (256)
T PRK03359 35 SQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL---------TNAKGRKDVLSR--GPDELIVVIDDQFEQALPQQTASA 103 (256)
T ss_pred ChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch---------hhHHHHHHHHHc--CCCEEEEEecCcccCcCHHHHHHH
Confidence 5899999999999998754 8999998865421 012344443332 222222211 1 11233344444
Q ss_pred HHhhh--cCCcEEEEcccCC-CCcccc-cccccccCCCccchhhhh
Q 004016 713 INAIA--NDFDLFLAGRRHE-GCLHVL-QGLGEWIEIEELGVVGDL 754 (779)
Q Consensus 713 i~~~~--~~~dL~iVGr~~~-~~s~~~-~gl~~w~e~~eLG~iGd~ 754 (779)
|.+.- .+|||++-|+... ..+-++ .-+.+|-..|-+..+-++
T Consensus 104 La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 104 LAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred HHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 43321 2699999999862 222221 122344455655555543
No 114
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=78.17 E-value=44 Score=36.44 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCc--hhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhcc
Q 004016 54 LPMLLVTILTYAIQLLLKPFGEA--AFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARI 131 (779)
Q Consensus 54 ~~l~lil~~~~l~~~ll~rl~~P--~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~ 131 (779)
.++.+++.++.+.+++++|+|+| .++|-++++.++.-...... -+| .. +..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~------~~P----~~---l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSF------SLP----PW---LVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCC------CCC----HH---HHHHHHHHHHHHHHccc
Confidence 44566667788889999999986 46666766666653311111 112 23 34455556666899999
Q ss_pred ChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004016 132 DKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRD 167 (779)
Q Consensus 132 d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~ 167 (779)
|.+.+|+..| .+..++...+.-+.++.+.++.+..
T Consensus 222 ~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~ 256 (318)
T PF05145_consen 222 TRETLRELRR-LLPPALLSTLLLLALCALFAWLLSR 256 (318)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877654 4444455555555555555555554
No 115
>PRK12342 hypothetical protein; Provisional
Probab=78.14 E-value=5.7 Score=41.76 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=52.3
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHH-HHHHhhhhcCCCCCEEEEEEee--cChHHHHHHH
Q 004016 637 GADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQA-MINDFRFVNLDSKNVEYVEEGV--EEGFETLRII 713 (779)
Q Consensus 637 G~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~-~i~~~~~~~~~~~~v~y~e~~v--~~~~e~~~~i 713 (779)
.|.|+-|++.|.|+. +.+.++|++.+-++. .+++ ++++....- ...-+....... .|.-.|..++
T Consensus 34 Np~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~----------a~~~~l~r~alamG-aD~avli~d~~~~g~D~~ata~~L 101 (254)
T PRK12342 34 SQFDLNAIEAASQLA-TDGDEIAALTVGGSL----------LQNSKVRKDVLSRG-PHSLYLVQDAQLEHALPLDTAKAL 101 (254)
T ss_pred ChhhHHHHHHHHHHh-hcCCEEEEEEeCCCh----------HhHHHHHHHHHHcC-CCEEEEEecCccCCCCHHHHHHHH
Confidence 589999999999999 468899999886541 1122 334333321 111222221111 1332233333
Q ss_pred Hhhh--cCCcEEEEcccCCCC-----cccccccccc
Q 004016 714 NAIA--NDFDLFLAGRRHEGC-----LHVLQGLGEW 742 (779)
Q Consensus 714 ~~~~--~~~dL~iVGr~~~~~-----s~~~~gl~~w 742 (779)
...- .+|||++-|+..... .|+++++.+|
T Consensus 102 a~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 102 AAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred HHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 2221 269999999986433 3555555555
No 116
>COG3329 Predicted permease [General function prediction only]
Probab=77.86 E-value=61 Score=34.63 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=73.8
Q ss_pred hhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHH
Q 004016 306 NSYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCL 385 (779)
Q Consensus 306 ~~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~ 385 (779)
+|.+.-|+.|++.+-... .-++-+.+-...+-.++--.-..-|+.+.-+.+... +..++.-+.+.++.-+++.++..+
T Consensus 17 sP~llFf~~Gmlia~~ks-dl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~-v~~~~~~~aL~~li~~ia~f~l~k 94 (372)
T COG3329 17 SPTLLFFILGMLIAAFKS-DLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAM-VLPVALGVALGFLIVFIAYFLLRK 94 (372)
T ss_pred cchHHHHHHHHHHHHHhc-cccCchHHHHHHHHHHHHHHhcccceeeecCCcchh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888887764321 111122222211111221112233444444434322 333444555666677788888899
Q ss_pred hcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHH
Q 004016 386 YSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVI 431 (779)
Q Consensus 386 ~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~ 431 (779)
+.|++..|+...+..-+.-..+..+.+..-++..-+..+.|...++
T Consensus 95 l~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~l 140 (372)
T COG3329 95 LPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAML 140 (372)
T ss_pred ccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 9999999999999988888888888888877776676666554433
No 117
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=77.33 E-value=28 Score=38.76 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHh--hhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccC
Q 004016 55 PMLLVTILTYAIQLLLK--PFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARID 132 (779)
Q Consensus 55 ~l~lil~~~~l~~~ll~--rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d 132 (779)
.+.+...++..+..+++ .+.+|..++.+++|+++.... .... . ..-..+.++.++++++-+++..+=..++
T Consensus 225 ~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~-~~~~---~---~~id~~~i~~I~~~sL~~fl~~almsl~ 297 (368)
T PF03616_consen 225 LILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL-DKTG---K---YKIDRKTIDRISGISLDLFLAMALMSLK 297 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH-HHhC---c---ccCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455555555555 366899999999999997432 1110 0 0024567889999999999988888999
Q ss_pred hhHHHhcchhHHHHHHHHHHHHHHHH
Q 004016 133 KGIVKKSGKLAIVIGVGAFIIPLIVS 158 (779)
Q Consensus 133 ~~~l~~~~~~~~~ia~~~~l~p~~~g 158 (779)
+..+.+..-..+.+-+.+.++..+..
T Consensus 298 l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 298 LWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988777766666666655543
No 118
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=75.97 E-value=26 Score=39.24 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=64.1
Q ss_pred HHHHHhcchhhHHHHHHHhhcCCCCCch-hHH-HHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHh
Q 004016 298 LVGELTGQNSYLGPFILGITTPVTPPMG-SLL-ADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTV 375 (779)
Q Consensus 298 ~~se~lg~~~~lGaflaGL~l~~~~p~~-~~l-~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~ 375 (779)
.++..+|....+=-...|++..... .+ -+. ...+..++..+-+.+...-.|++++++.+....+....+..+-..+.
T Consensus 24 ~~ssrfGvP~LllFl~iGm~aG~dG-lg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~T 102 (574)
T COG3263 24 LISSRFGVPLLLLFLSIGMLAGVDG-LGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLIT 102 (574)
T ss_pred HHHHHcCchHHHHHHHHHHHcCCCc-ccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344445444444444555555432 11 111 12344455666666666778999998776543343333333333444
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhH
Q 004016 376 KTFAIVIPCLYSKIPFMDALALGLLLNCRGIYD 408 (779)
Q Consensus 376 K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~ 408 (779)
..+....+.+.++++|-|++.+|.+.+..-..+
T Consensus 103 s~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAA 135 (574)
T COG3263 103 SGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAA 135 (574)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhhccccHHH
Confidence 555666778889999999999999876654443
No 119
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=75.91 E-value=0.93 Score=50.52 Aligned_cols=112 Identities=14% Similarity=0.218 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHH
Q 004016 291 VIVLVVALVGELTGQNSYLGPFILGITTPVTPPMG--SLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMV 368 (779)
Q Consensus 291 ~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~--~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~i 368 (779)
+..+....+.+.++++.++|-.++|+++.... .. +.-.+..+. ...+.+++.....|+++|...+... +......
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~-l~~i~l~~llF~~G~~~d~~~l~~~-~~~~~~~ 82 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFEL-LAEIGLAFLLFEAGLELDIKELRRN-WRRALAL 82 (380)
T ss_dssp -------------------------------------------S-S-SHHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHH-HHHHHHHHHHHHHHHhhcccccccc-ccccccc
Confidence 33444455788999999999999999998763 22 001223333 4677788888889999999887543 2222222
Q ss_pred HHHHHHhhHHH-HHHHHH---hcCCChHHHHHHHHHhhhhh
Q 004016 369 ILIAGTVKTFA-IVIPCL---YSKIPFMDALALGLLLNCRG 405 (779)
Q Consensus 369 iv~~~~~K~~~-~~l~~~---~~~~~~~~~l~lg~~l~~kG 405 (779)
.+..++.-++. ++.... ..+.++.+++.+|..+++-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp -------------------------------TTHHHHTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 23333333333 333442 46889999999999877543
No 120
>PRK10711 hypothetical protein; Provisional
Probab=75.91 E-value=1e+02 Score=31.92 Aligned_cols=83 Identities=7% Similarity=0.007 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhH
Q 004016 361 HFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAII 440 (779)
Q Consensus 361 ~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~ 440 (779)
.|..+.+-+.++.+.-++++++.++.++.+..- -..|.+|..-.=+...+..+.|-+..-+-...+++-++-..+.
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~----~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPEI----AASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 354455555666667778888889998887542 3447899998888888887777665555555566666666667
Q ss_pred HHHHHHh
Q 004016 441 IPLVKLV 447 (779)
Q Consensus 441 ~plv~~l 447 (779)
++++|++
T Consensus 163 ~~llk~~ 169 (231)
T PRK10711 163 HTLLNAM 169 (231)
T ss_pred HHHHHHc
Confidence 7777775
No 121
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=74.86 E-value=20 Score=39.97 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=68.7
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhccc-ccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhcC
Q 004016 310 GPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRR-VDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYSK 388 (779)
Q Consensus 310 GaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~-~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~~ 388 (779)
...++|....+..-+..+-.+.+..++..+++|.+....=.+ .+...+. .++.+.+..++..+.-++.+++..++++
T Consensus 11 ~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (385)
T PF03547_consen 11 LIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL--SLWFIPVFAFIIFILGLLLGFLLSRLFR 88 (385)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334455555554446667778888889999999985544334 3333222 2333333333333334555666677777
Q ss_pred CChHHHHH--HHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhc
Q 004016 389 IPFMDALA--LGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLVYD 449 (779)
Q Consensus 389 ~~~~~~l~--lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~ 449 (779)
.+.++.-. ++...+.-|.+.+-+....... +.....++..++..++.-++...+..
T Consensus 89 ~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 89 LPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred CCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 77655432 3333444555555555543332 33333334444444444444444443
No 122
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=72.53 E-value=19 Score=43.40 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=74.2
Q ss_pred cceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeecCh
Q 004016 627 CRRVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEG 706 (779)
Q Consensus 627 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~ 706 (779)
. ||+|---|+|....-+..|.|+|+..++..|++++..++.....+.+++.=++.+ +..+.-.. |.++-.+
T Consensus 249 e-~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~-~Lae~lGa-------e~~~l~~ 319 (890)
T COG2205 249 E-RILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENL-RLAEELGA-------EIVTLYG 319 (890)
T ss_pred c-eEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHH-HHHHHhCC-------eEEEEeC
Confidence 5 8999999999999999999999999999999999987643322212222111222 12222111 2222345
Q ss_pred HHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCC
Q 004016 707 FETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDD 759 (779)
Q Consensus 707 ~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d 759 (779)
.|+..+|-+.++ +..-+|+|+++.. -|.+.-+ |.+.|-|+..-
T Consensus 320 ~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~~ 364 (890)
T COG2205 320 GDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLAREA 364 (890)
T ss_pred CcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhcC
Confidence 667777766655 5678999999864 4644433 77777777763
No 123
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=70.88 E-value=26 Score=34.70 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=32.1
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEe
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVV 665 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~ 665 (779)
||++.+.||.|.--++.++.+.+++.+.++.++++-.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999998877777888888753
No 124
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=70.66 E-value=1.3e+02 Score=30.93 Aligned_cols=83 Identities=5% Similarity=0.036 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhH
Q 004016 361 HFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAII 440 (779)
Q Consensus 361 ~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~ 440 (779)
.|..+.+.+.++.+.-+..+++.++.++.+.. +. ..+.+|..-.=+...+..+.|-...-+-...+++-++-..+.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~--~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--II--ASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566667778888898888743 33 347899988888888877777655555555566666666667
Q ss_pred HHHHHHh
Q 004016 441 IPLVKLV 447 (779)
Q Consensus 441 ~plv~~l 447 (779)
++++|++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 7777775
No 125
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=69.63 E-value=7.5 Score=44.31 Aligned_cols=72 Identities=15% Similarity=0.294 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCccEEEec---ccc---CC---ChhhHHHHHHhhhcCCCceEEEecCCCccccc--------ccccceE
Q 004016 568 HDDICSMAFQKATSLIIFP---FLK---TE---PTLTKKVINNVLSMSPCSIGLLYDRSLAIDYR--------SFQCRRV 630 (779)
Q Consensus 568 ~~dI~~~A~e~~~~lIilp---~h~---~~---~~~~~~~n~~vl~~apCsVgIlvdrg~~~~~~--------~~~~~~i 630 (779)
.++||.+|.++++|+|++| ||. |. ...++.+-+.-+..-||..=++-|.+.-..+. ..+. +|
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNl-NI 119 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNL-NI 119 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCc-ce
Confidence 6799999999999999999 676 22 34455566677888999999998887531111 0114 78
Q ss_pred EEeecC--CccH
Q 004016 631 CVLFIG--GADD 640 (779)
Q Consensus 631 ~v~f~G--G~dd 640 (779)
.+|.++ |.||
T Consensus 120 sIPVFsIHGNHD 131 (646)
T KOG2310|consen 120 SIPVFSIHGNHD 131 (646)
T ss_pred eeeeEEeecCCC
Confidence 888876 6544
No 126
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=69.57 E-value=15 Score=35.68 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEe-ec--ChHHHHHHHH
Q 004016 638 ADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEG-VE--EGFETLRIIN 714 (779)
Q Consensus 638 ~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~-v~--~~~e~~~~i~ 714 (779)
+.|+|+|+.|+++++..+.+++++-+-+. ++. ++.+++...++. -+++-..+-- -. +.+....++.
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~---------~~~-~~~l~~~l~~~G-~d~v~~~~~~~~~~~~~~~~a~~l~ 83 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPA---------EEA-AEALRKALAKYG-ADKVYHIDDPALAEYDPEAYADALA 83 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETC---------CCH-HHHHHHHHHSTT-ESEEEEEE-GGGTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecc---------hhh-HHHHhhhhhhcC-CcEEEEecCccccccCHHHHHHHHH
Confidence 78999999999999999999998876521 112 222333332221 2233332211 11 3445666666
Q ss_pred hhhc--CCcEEEEcccCC
Q 004016 715 AIAN--DFDLFLAGRRHE 730 (779)
Q Consensus 715 ~~~~--~~dL~iVGr~~~ 730 (779)
++.+ ++|+++.|.+..
T Consensus 84 ~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 84 ELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp HHHHHHT-SEEEEESSHH
T ss_pred HHHHhcCCCEEEEcCcCC
Confidence 6544 699999998753
No 127
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=68.71 E-value=20 Score=38.68 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=29.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEe
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVV 665 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~ 665 (779)
++++.|.||+|+--.|.+|++.-...+..+.++++-.
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDT 65 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDT 65 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeC
Confidence 7999999999999999999887654456677776643
No 128
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=67.20 E-value=70 Score=35.19 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=55.3
Q ss_pred HHHHhhh-CCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHH-HHHHHHHHHHHHHHhhc-cChhHHHhcc-hh
Q 004016 67 QLLLKPF-GEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAIN-VIECVGLIFMFFTLSAR-IDKGIVKKSG-KL 142 (779)
Q Consensus 67 ~~ll~rl-~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~-~l~~lGl~~llF~~Gle-~d~~~l~~~~-~~ 142 (779)
+.+++.+ ++|..+-+++.|+++- .+|..|+-.+ +...... .+..--...+|+-+|+. +|++++-+.. ..
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k--~~gllp~~i~-----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~ 267 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALK--AFGLVPKEIE-----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ 267 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHH--HhCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh
Confidence 3444444 6899999999999986 4666653111 1122233 33332333344447886 8999998877 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 004016 143 AIVIGVGAFIIPLIVSILTTLFIRD 167 (779)
Q Consensus 143 ~~~ia~~~~l~p~~~g~~~~~~l~~ 167 (779)
.+.+.+.+++.-.+.++.++.+++.
T Consensus 268 ~vviiv~~Vlg~ii~s~lvGKllG~ 292 (347)
T TIGR00783 268 FVVICLSVVVAMILGGAFLGKLMGM 292 (347)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 4555555555445555667776654
No 129
>PRK09903 putative transporter YfdV; Provisional
Probab=65.33 E-value=1.8e+02 Score=31.43 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=62.2
Q ss_pred hCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHH-HH
Q 004016 73 FGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVG-AF 151 (779)
Q Consensus 73 l~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~-~~ 151 (779)
++-|.+++.+++ +++. .+|.. .|..-.+.++.+++...-+-||..|..++...++.. ++.+..... -+
T Consensus 171 ~~nP~iia~~~g-l~~~--l~~i~-------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVLA-TILV--LVGVK-------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHHH-HHHH--HcCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 556888887654 5543 23431 244457889999999999999999999877665443 333333333 33
Q ss_pred HHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHH
Q 004016 152 IIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTE 200 (779)
Q Consensus 152 l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~e 200 (779)
+.|++. ....+.++ .+ ....-...+++....++.+.++.+
T Consensus 240 ~~P~i~-~~~~~~~~--l~------~~~~~v~vl~aa~P~a~~~~i~A~ 279 (314)
T PRK09903 240 LMPLAL-LLVGMACH--LN------SEHLQMMVLAGALPPAFSGIIIAS 279 (314)
T ss_pred HHHHHH-HHHHHHcC--CC------cHHHHHHHHHHcccHHHHHHHHHH
Confidence 456654 22222222 11 223334455555555666666654
No 130
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=65.10 E-value=3.1e+02 Score=32.99 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=63.7
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcC
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNK 550 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 550 (779)
-+||+-+.||+..-+++++...++.. .+|++--|.+.+..+.. .. ...+.++.--.|..+++
T Consensus 561 PQILLlV~nPrss~~Lirf~N~LKKg----gLYilGHV~~gd~~~~~--~d---------~l~~q~~~W~s~vd~~~--- 622 (945)
T KOG1288|consen 561 PQILLLVSNPRSSCNLIRFCNDLKKG----GLYILGHVIVGDDFSAS--MD---------ELQQQQRAWLSFVDDAG--- 622 (945)
T ss_pred ceEEEEecCCcccchHHHHHHhhccc----ceEEEEEEEeccccccc--cc---------hhhHHHHHHHHHHHHhh---
Confidence 37999999999999999999988865 67888777776544311 01 11112233334444433
Q ss_pred cceEEEEEEEeccCCChHHHHHHHHhhc-----CccEEEecccc
Q 004016 551 AYVSVQCFTAVAPYASMHDDICSMAFQK-----ATSLIIFPFLK 589 (779)
Q Consensus 551 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~~~lIilp~h~ 589 (779)
++.|+.+.--.++..+|-++.+-- +.+.+++||+.
T Consensus 623 ----iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d 662 (945)
T KOG1288|consen 623 ----IKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYD 662 (945)
T ss_pred ----hhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeec
Confidence 344444443358888888887753 68999999987
No 131
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=64.46 E-value=1.7e+02 Score=29.94 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhH
Q 004016 361 HFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAII 440 (779)
Q Consensus 361 ~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~ 440 (779)
.|...+.-++++.+.-+..+++.++.++.+..- ...+.+|..-.=+...+..+.|-...-+-...+++-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~----~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPEI----ILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 455455555666667778888888998887543 2346889988877777777777665555555556666666667
Q ss_pred HHHHHHh
Q 004016 441 IPLVKLV 447 (779)
Q Consensus 441 ~plv~~l 447 (779)
++++|++
T Consensus 152 ~~llk~~ 158 (215)
T PF04172_consen 152 PPLLKLL 158 (215)
T ss_pred HHHHhHc
Confidence 7777774
No 132
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=64.41 E-value=24 Score=38.00 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=29.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEe
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVV 665 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~ 665 (779)
+.++.|.||+|+--.|.++++.-...+.++.++|+-.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDT 57 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDT 57 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEec
Confidence 5678899999999999999998754456777787744
No 133
>COG2431 Predicted membrane protein [Function unknown]
Probab=64.27 E-value=29 Score=36.51 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccC---hhH-HHhcchhHHHHHHHHHH
Q 004016 77 AFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARID---KGI-VKKSGKLAIVIGVGAFI 152 (779)
Q Consensus 77 ~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d---~~~-l~~~~~~~~~ia~~~~l 152 (779)
.+.+..+.|+++|-..-...+ ..+...+..+.+++|.+|.++. ... -+.-.|+....++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~~-------------~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFLN-------------FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhccccc-------------CchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 567788888888843222211 1345678889999999999887 221 11223777777777666
Q ss_pred HHHHHHHHHHHHHh
Q 004016 153 IPLIVSILTTLFIR 166 (779)
Q Consensus 153 ~p~~~g~~~~~~l~ 166 (779)
-..+.|...++++.
T Consensus 175 ssliGG~iaa~~l~ 188 (297)
T COG2431 175 SSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666655555444
No 134
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=64.03 E-value=18 Score=30.62 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=27.1
Q ss_pred EEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEE
Q 004016 630 VCVLFIGGADDREALALGARMGRNPSIHLTVTRFV 664 (779)
Q Consensus 630 i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~ 664 (779)
|++++-||+|+-.++.++.+.+ ..+..++++++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5789999999999999999987 345566766663
No 135
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=63.50 E-value=1.9e+02 Score=29.88 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=68.1
Q ss_pred HHHHHHhhhC----CchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcc
Q 004016 65 AIQLLLKPFG----EAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSG 140 (779)
Q Consensus 65 l~~~ll~rl~----~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~ 140 (779)
+.-++.||.+ .|-.++.++...++=. +| +| +.++. ++.+++..+ +|-.-.-|.+-+--+.+.+||++
T Consensus 20 ~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~-i~-Y~~Y~---~g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~w 90 (230)
T COG1346 20 AAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FG-IS-YEDYM---KGGQWINFL--LGPATVALAVPLYKQRHLIKRHW 90 (230)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHH--cC-CC-HHHHh---cccHHHHHH--HHHHHHHHhhHHHHHHHHHHHHH
Confidence 3355666666 4666665555444421 22 22 11111 344555554 33344455666667888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHH-HhhhhHHHHHHHHHHcCc
Q 004016 141 KLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATL-EATISFHVILANLTELKL 203 (779)
Q Consensus 141 ~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~el~l 203 (779)
+........|....++.+..++.+++... .+..+.. -|+|. |+...+-+++|=
T Consensus 91 ~~I~~g~~vGs~~ai~s~~llak~~g~~~---------~~~~Sl~PkSvTT-piAm~vs~~iGG 144 (230)
T COG1346 91 KPILAGVLVGSVVAIISGVLLAKLFGLSP---------ELILSLLPKSVTT-PIAMEVSESIGG 144 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHhccccccc-HHHHHHHHhcCC
Confidence 99888777788777777777777765321 1222222 23343 666666666663
No 136
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=63.46 E-value=17 Score=39.62 Aligned_cols=114 Identities=14% Similarity=0.057 Sum_probs=66.8
Q ss_pred HHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHh------cCCChHHHHHHHHHhhhhhhhH
Q 004016 335 FVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLY------SKIPFMDALALGLLLNCRGIYD 408 (779)
Q Consensus 335 ~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~------~~~~~~~~l~lg~~l~~kG~~~ 408 (779)
+.++++=|+.|.-+|.-+|++-+-..... .++-..+-++-+. +++.+.. .+++.+|+-.+|.+=..-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~--~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT--LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH--HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 34677888899999999999887532211 1111222222222 2222222 3789999999999878888887
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhcccch
Q 004016 409 IQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLVYDSSRK 453 (779)
Q Consensus 409 l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~p~~~ 453 (779)
+.+.+.-- -+++..-.-..---+.++ =.+.||++|.+-.+++|
T Consensus 208 IfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15475 208 IYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETER 250 (433)
T ss_pred HHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 77766421 122332222222233333 56789999998754444
No 137
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=63.30 E-value=17 Score=39.60 Aligned_cols=113 Identities=14% Similarity=0.051 Sum_probs=66.4
Q ss_pred HHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHh------cCCChHHHHHHHHHhhhhhhhHH
Q 004016 336 VWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLY------SKIPFMDALALGLLLNCRGIYDI 409 (779)
Q Consensus 336 ~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~------~~~~~~~~l~lg~~l~~kG~~~l 409 (779)
.++++=|+.|.-+|.-+|++-+-..... .++-..+-++-+. +++.+.. .+++.+|+-.+|.+=..-|-.++
T Consensus 132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~--~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15476 132 GSGVAPLVIFMGVGAMTDFGPLLANPRT--LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred hcchHHHHHHHhccHHhcchHHhhCHHH--HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Confidence 4677888899999999999887532211 1111222222222 2222222 37899999999998788888877
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhcccch
Q 004016 410 QVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLVYDSSRK 453 (779)
Q Consensus 410 ~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~p~~~ 453 (779)
.+.+.-- -+++..-.-..---+.++ =.+.||++|.+-.+++|
T Consensus 209 fvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15476 209 YLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKER 250 (433)
T ss_pred HhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 7766421 123332222222233333 56789999988754443
No 138
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=63.29 E-value=17 Score=39.60 Aligned_cols=113 Identities=14% Similarity=0.051 Sum_probs=66.3
Q ss_pred HHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHh------cCCChHHHHHHHHHhhhhhhhHH
Q 004016 336 VWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLY------SKIPFMDALALGLLLNCRGIYDI 409 (779)
Q Consensus 336 ~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~------~~~~~~~~l~lg~~l~~kG~~~l 409 (779)
.++++=|+.|.-+|.-+|++-+-..... .++-..+-++-+. +++.+.. .+++.+|+-.+|.+=+.-|-.++
T Consensus 132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~--~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15477 132 GSGVAPLVIFMGVGAMTDFGPLLANPRT--LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred hcchHHHHHHHhccHHhcchHHhhCHHH--HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Confidence 4677888899999999999887532211 1111222222222 2222222 37899999999998788888877
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhcccch
Q 004016 410 QVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLVYDSSRK 453 (779)
Q Consensus 410 ~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~p~~~ 453 (779)
.+.+.-- -+++..-.-..---+.++ =.+.||++|.+-.+++|
T Consensus 209 fvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15477 209 YLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKER 250 (433)
T ss_pred HhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 7766421 123332222222233333 56789999988754443
No 139
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=62.09 E-value=2.8e+02 Score=31.53 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHH
Q 004016 190 SFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFAP 227 (779)
Q Consensus 190 s~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~ill 227 (779)
-+|++..+.+.+|+.+.+.=-.+++++.+.|..+..+-
T Consensus 116 lTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 116 LTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred hHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 36888888899997655555678899999999888653
No 140
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=61.86 E-value=65 Score=36.28 Aligned_cols=108 Identities=22% Similarity=0.310 Sum_probs=66.6
Q ss_pred hhHHHHHHhhhcCC--CceEEEecCCCcccccccccceEEEeecCCccHHHHHHHHHHHh-cCCCeEEEEEEEEecCCCC
Q 004016 594 LTKKVINNVLSMSP--CSIGLLYDRSLAIDYRSFQCRRVCVLFIGGADDREALALGARMG-RNPSIHLTVTRFVVTNPTM 670 (779)
Q Consensus 594 ~~~~~n~~vl~~ap--CsVgIlvdrg~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltv~~~~~~~~~~ 670 (779)
..-++|++|+--+| |.= |+-+ .... . +|||+|.||-|.---..++.+.. .|+.+.|-=+-|-.++...
T Consensus 224 l~ds~k~rvl~i~~rl~~~-i~~~------c~~~-s-~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~ 294 (520)
T KOG0573|consen 224 LRDSLKDRVLVIPPRLCAN-ILLR------CIHE-S-NVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSK 294 (520)
T ss_pred HHHHHhhhhhccChhHhhh-cccc------cccc-C-cEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCccc
Confidence 34557777777666 221 1111 1111 3 89999999999999999999887 5556655544554332222
Q ss_pred C-CccchhhHHHHHHHhhhhcCCCCCEEEEEEeecChHHHHHH
Q 004016 671 S-DFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEGFETLRI 712 (779)
Q Consensus 671 ~-~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~e~~~~ 712 (779)
+ +-.+++....-++|++.... +....+.|.-| +.+|..+.
T Consensus 295 ~~~~PDRktgr~g~~eL~s~~P-~R~~nlV~vnV-~~~El~~~ 335 (520)
T KOG0573|consen 295 EQNVPDRKTGRRGLEELQSLYP-KRSWNLVEVNV-TYEELQKA 335 (520)
T ss_pred ccCCccHHHHHHHHHHHHHhCC-cceEEEEeccC-CHHHHHHH
Confidence 2 33778888888999987653 33566666655 34444433
No 141
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=60.77 E-value=25 Score=34.74 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=55.1
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeec----
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVE---- 704 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~---- 704 (779)
+|+|-+.||+|.--.|.+..++.++.+.+++++++-..-. .+...+.+.++++.++.. +.|.-+.++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~-----~~s~~~~~~v~~~~~~~~----i~~~~~~~~~~~~ 71 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR-----EESDEEAEFVEEICEQLG----IPLYIVRIDEDRK 71 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS-----CCHHHHHHHHHHHHHHTT-----EEEEEE--CHCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----cccchhHHHHHHHHHhcC----CceEEEEeeeeec
Confidence 5789999999999999999999999999999999975421 134445677888887653 333222222
Q ss_pred ---ChHHHH-----HHHHhhhc--CCcEEEEcccC
Q 004016 705 ---EGFETL-----RIINAIAN--DFDLFLAGRRH 729 (779)
Q Consensus 705 ---~~~e~~-----~~i~~~~~--~~dL~iVGr~~ 729 (779)
+-++.. ..+.+.+. ++|.+..|-+.
T Consensus 72 ~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 72 KGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp TTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred ccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 122222 23445543 57888888663
No 142
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=60.09 E-value=43 Score=36.15 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=67.9
Q ss_pred HHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhcCC------ChHHHHHHHHHhhhhhhhH
Q 004016 335 FVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYSKI------PFMDALALGLLLNCRGIYD 408 (779)
Q Consensus 335 ~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~------~~~~~l~lg~~l~~kG~~~ 408 (779)
+-++++=|+-|.-+|.-+|++-+-..... .++-..+-++ +..+++.+...++ +.+|+-.+|.+=..-|-.+
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllanP~~--~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~ 136 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLANPRT--LLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA 136 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhChHH--HHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchh
Confidence 34678888999999999999877543221 1121222222 2234455556677 7799999998877778777
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHHhhcccch
Q 004016 409 IQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKLVYDSSRK 453 (779)
Q Consensus 409 l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~l~~p~~~ 453 (779)
+.+.+.-- -+++..-.-..-.-+.++ =.+.||++|.+-.+++|
T Consensus 137 If~s~~la-p~Llg~IaVAAYsYMaLv-PiiqPpimklLttkkeR 179 (354)
T TIGR01109 137 IYLSGKLA-PELLAAIAVAAYSYMALV-PIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhHhhhh-hHHHHHHHHHHHHHHHHH-hcccchHHHhhcChHHh
Confidence 77665421 122222222222233333 56689999998754444
No 143
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=59.60 E-value=1.2e+02 Score=33.67 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHH
Q 004016 49 IMVVFLPMLLVTILTYAIQLLLKP--FGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFT 126 (779)
Q Consensus 49 l~~~l~~l~lil~~~~l~~~ll~r--l~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~ 126 (779)
+...+.-+++.+.++..+..+++. +.+|..++.+.+|+++.... +.. .++.-..+..+.++++++.+++=.
T Consensus 220 l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~----~~~---~~~~v~~~~v~~ig~vsL~lflam 292 (404)
T COG0786 220 LIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL----DLL---KKYRVFRRAVDVIGNVSLSLFLAM 292 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH----HHh---ccccccHHHHHHHhhhHHHHHHHH
Confidence 333344445555556666666664 55899999999999987421 111 111124677889999999998877
Q ss_pred HhhccChhHHHhcchhHHHHHHHHHHHHHHHH
Q 004016 127 LSARIDKGIVKKSGKLAIVIGVGAFIIPLIVS 158 (779)
Q Consensus 127 ~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g 158 (779)
+=+.+.+-++-..+-..+++-..+.+.-.+..
T Consensus 293 ALmSlkLweL~~l~lpl~viL~vQ~i~m~lfa 324 (404)
T COG0786 293 ALMSLKLWELADLALPLLVILAVQTIVMALFA 324 (404)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 77788888887777666666556655544433
No 144
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=58.64 E-value=28 Score=36.73 Aligned_cols=106 Identities=14% Similarity=0.096 Sum_probs=61.7
Q ss_pred CccHHHHHHHHHHHhc-CCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEE---EeecChHHHHHH
Q 004016 637 GADDREALALGARMGR-NPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVE---EGVEEGFETLRI 712 (779)
Q Consensus 637 G~ddreAL~~a~rma~-~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e---~~v~~~~e~~~~ 712 (779)
.|.|+-|++.|.|+.+ ..+.++|++.+-++. . ++.+++... .+-++..-.+ .--.|...|..+
T Consensus 36 n~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~----------a-~~~lr~aLA--mGaDraili~d~~~~~~d~~~ta~~ 102 (260)
T COG2086 36 NPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ----------A-EEALREALA--MGADRAILITDRAFAGADPLATAKA 102 (260)
T ss_pred ChhhHHHHHHHHHhhccCCCceEEEEEecchh----------h-HHHHHHHHh--cCCCeEEEEecccccCccHHHHHHH
Confidence 4899999999999999 699999999987552 1 233333222 2222322222 111345556566
Q ss_pred HHhhh--cCCcEEEEcccCC-CCccc-ccccccccCCCccchhhhhh
Q 004016 713 INAIA--NDFDLFLAGRRHE-GCLHV-LQGLGEWIEIEELGVVGDLL 755 (779)
Q Consensus 713 i~~~~--~~~dL~iVGr~~~-~~s~~-~~gl~~w~e~~eLG~iGd~l 755 (779)
|.+.. .++||++.|.... ..+.+ =..+.+|--.|-++.+-++-
T Consensus 103 Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 103 LAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 65543 3689999999853 22222 22333555556655554443
No 145
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=57.29 E-value=26 Score=37.96 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=28.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFV 664 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~ 664 (779)
++++.|.||+|+--.|.+|.+.....+..+.++++-
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VD 74 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVD 74 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeC
Confidence 678899999999999999999875445566777663
No 146
>TIGR00930 2a30 K-Cl cotransporter.
Probab=56.78 E-value=5.1e+02 Score=32.85 Aligned_cols=99 Identities=8% Similarity=0.020 Sum_probs=62.5
Q ss_pred ccceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHh
Q 004016 469 AELRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQT 548 (779)
Q Consensus 469 ~e~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 548 (779)
-..++|+.+.+|++-+.+++++..+.+. ..-..+.|+++-+.+.. . ++.++..+..+.+-+.
T Consensus 574 wrPqiLvl~~~p~~~~~Ll~f~~~l~~~--~gl~i~~~v~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~ 635 (953)
T TIGR00930 574 WRPQCLVLTGPPVCRPALLDFASQFTKG--KGLMICGSVIQGPRLEC-----V-----------KEAQAAEAKIQTWLEK 635 (953)
T ss_pred cCCeEEEEeCCCcCcHHHHHHHHHhccC--CcEEEEEEEecCchhhh-----H-----------HHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999953 33455668876432111 0 1112222223333221
Q ss_pred cCcceEEEEEEEeccCCChHHHHHHHHhhc-----CccEEEecccc
Q 004016 549 NKAYVSVQCFTAVAPYASMHDDICSMAFQK-----ATSLIIFPFLK 589 (779)
Q Consensus 549 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~~~lIilp~h~ 589 (779)
-.++.|..+-.-+++.+++.++..-- +.+.++++|..
T Consensus 636 ----~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 636 ----NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred ----hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 12333443333469999999988865 68999999976
No 147
>COG2985 Predicted permease [General function prediction only]
Probab=55.38 E-value=49 Score=37.64 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=66.6
Q ss_pred chhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhH---HHhcchhHHHHHHHHHH
Q 004016 76 AAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGI---VKKSGKLAIVIGVGAFI 152 (779)
Q Consensus 76 P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~l 152 (779)
-..-|.+++|++|| .+|.+..+. |..| ......+.++|+.+||=-+|++---+. +-..+-.....|..-.+
T Consensus 396 G~aGGpLivaLiLG--~ig~iGpl~-w~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~ 469 (544)
T COG2985 396 GNAGGPLIVALILG--FIGAIGPLT-WFMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTL 469 (544)
T ss_pred cccccHHHHHHHHH--HhcccCceE-EEcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHH
Confidence 34567888888887 344432211 2223 355677899999976666666543332 33444455555555667
Q ss_pred HHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHc
Q 004016 153 IPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTEL 201 (779)
Q Consensus 153 ~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 201 (779)
+|.+.++.++.++.+.- | ..++=+.+-+.|++|.+.- ..|.
T Consensus 470 vp~i~~~llg~~v~kmn------~-~~l~G~laGs~T~ppaLa~-and~ 510 (544)
T COG2985 470 VPVIIVFLLGRYVLKMN------W-LLLCGALAGSMTDPPALAF-ANDA 510 (544)
T ss_pred HHHHHHHHHHHHHHhcc------H-HHHhhHHhcCCCChHHHHH-Hhhc
Confidence 78888888888877642 2 2233345567899887744 3443
No 148
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=54.19 E-value=1e+02 Score=30.04 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=31.4
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCC--CeEEEEEEEEec
Q 004016 629 RVCVLFIGGADDREALALGARMGRNP--SIHLTVTRFVVT 666 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltv~~~~~~ 666 (779)
||++.+-||.|.--.+.++.+..++. +.+++.+++-..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999999998887654 778888887644
No 149
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=54.06 E-value=3e+02 Score=30.33 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcch--hhHH-HHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccch--
Q 004016 285 HLVALNVIVLVVALVGELTGQN--SYLG-PFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF-- 359 (779)
Q Consensus 285 ~~~~il~~~l~~~~~se~lg~~--~~lG-aflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~-- 359 (779)
+....+.+.+..+++.+..|+. .++| +.++|.+..-.. ..-.+-..+...+ .-+.-..+|.++..+.+..
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~-~~l~~P~~l~~~~----q~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRG-LTLPLPRGLFKAG----QVILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc-ccccCChHHHHHH----HHHHHHHHhhhcCHHHHHHHH
Confidence 3455566666778888888885 4788 666666665321 1111222222222 2233456788887776653
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHh
Q 004016 360 NHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTR 414 (779)
Q Consensus 360 ~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~ 414 (779)
..|....++++..+..-++..++..|+.+.|..+++ +...|-|..++.....
T Consensus 85 ~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA~ 136 (352)
T COG3180 85 SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIAQ 136 (352)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHHH
Confidence 347666777777777888888999998878777664 3467777777666553
No 150
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=53.97 E-value=28 Score=37.70 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=39.6
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCe-EEEEEEEEecCCCCCCccchhhHHHHHHHhhhh
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSI-HLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFV 689 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v-~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~ 689 (779)
+|||-|.||+|.-..|+++.+.+++-+- .+.|++.--+ -+...-.++++|....
T Consensus 29 ~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E-------~QYs~TidyV~em~~~ 83 (407)
T COG3969 29 RVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWE-------AQYSCTIDYVQEMRES 83 (407)
T ss_pred eEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcch-------hhhhhHHHHHHHHHhc
Confidence 9999999999999999999999977655 7777766322 1233445566666654
No 151
>COG0679 Predicted permeases [General function prediction only]
Probab=53.32 E-value=2.1e+02 Score=31.02 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=61.0
Q ss_pred hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHh
Q 004016 307 SYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLY 386 (779)
Q Consensus 307 ~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~ 386 (779)
+++.-...|..+.+......+-.+-+.+++..+.+|..+...=.+.+.+.. ..+.......+..++.=++...+..+.
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL--ADLGLIVASLVATLLAFFLLALIGRFL 88 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666665556666667788899999999988877666666544 123333333333344445555666667
Q ss_pred cCCChHHH--HHHHHHhhhhhhhHHHHH
Q 004016 387 SKIPFMDA--LALGLLLNCRGIYDIQVF 412 (779)
Q Consensus 387 ~~~~~~~~--l~lg~~l~~kG~~~l~~~ 412 (779)
.+.+.++. ...+...+.-|-+.+-++
T Consensus 89 ~~~~~~~~~~~~~~~~~~N~g~lg~pi~ 116 (311)
T COG0679 89 FKLDKRETVIFALASAFPNIGFLGLPVA 116 (311)
T ss_pred hccchhhHHHHHHHHHhcccchhhHHHH
Confidence 77777755 333333444555543333
No 152
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=52.39 E-value=81 Score=34.02 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=51.8
Q ss_pred hHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHH
Q 004016 78 FASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIV 157 (779)
Q Consensus 78 iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~ 157 (779)
.+-.++.|+++|. ..+++.+.+-|.. .+-.-|+-|..|-.+|+..+.+.+-..+.+|+..+++....
T Consensus 174 ~llP~iiG~iLGN----LD~~~r~fl~~~~---------~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 174 ALLPIIIGMILGN----LDPDFRKFLAPGV---------PILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHhc----CCHHHHHHHhcCC---------CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 3445678888884 3555555544421 12245788999999999999999988888888877766655
Q ss_pred HHHHHHHHh
Q 004016 158 SILTTLFIR 166 (779)
Q Consensus 158 g~~~~~~l~ 166 (779)
.+.+-.++.
T Consensus 241 ~~~~dr~i~ 249 (314)
T PF03812_consen 241 LYLADRLIL 249 (314)
T ss_pred HHHHHHHHc
Confidence 554444443
No 153
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=49.52 E-value=96 Score=30.34 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=39.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
+|++.+.||.|+--++.++.+...+.+.++.++++-.... .+...+.+.++++.++.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~-----~~~~~~~~~~~~~~~~~ 57 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLR-----PESDEEAAFVADLCAKL 57 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC-----chHHHHHHHHHHHHHHc
Confidence 5889999999999999999998876667788887743311 11123345666666654
No 154
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=49.45 E-value=18 Score=30.62 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=35.6
Q ss_pred ChHHHHHHHHhhcCccEEEeccccCC---ChhhH-HHHHHhhhcCCCce
Q 004016 566 SMHDDICSMAFQKATSLIIFPFLKTE---PTLTK-KVINNVLSMSPCSI 610 (779)
Q Consensus 566 ~m~~dI~~~A~e~~~~lIilp~h~~~---~~~~~-~~n~~vl~~apCsV 610 (779)
.+++-+.+.|++.+++.|+.|.|.++ ....+ .....+.+.++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCce
Confidence 78999999999999999999999833 22333 45577888888884
No 155
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=48.40 E-value=2.1e+02 Score=32.11 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=54.1
Q ss_pred HHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHHhcCCC-hHHHHHHHHHhh---hhhhh
Q 004016 332 IQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCLYSKIP-FMDALALGLLLN---CRGIY 407 (779)
Q Consensus 332 l~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~-~~~~l~lg~~l~---~kG~~ 407 (779)
+.+.++..++|+-..+.=++.|++.+...+.. .+...+++.++-++++.++...++.. -.|...+.-.+. .-|.+
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~-~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~ 130 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRLGGR-LLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSV 130 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchh
Confidence 44556777788877777788999887654332 33344455556666666666665543 223333322222 24666
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHH
Q 004016 408 DIQVFTRAKQRLQITDESFAIMVIT 432 (779)
Q Consensus 408 ~l~~~~~~~~~~~i~~~~f~~lv~~ 432 (779)
..+....+++ .+++.|+..+.+
T Consensus 131 N~~Av~~al~---~~~~~~~a~~aa 152 (378)
T PF05684_consen 131 NFVAVAEALG---VSDSLFAAALAA 152 (378)
T ss_pred HHHHHHHHHC---CCHHHHHHHHHH
Confidence 6666655544 345556554443
No 156
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=48.34 E-value=1e+02 Score=33.46 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHH--
Q 004016 79 ASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLI-- 156 (779)
Q Consensus 79 v~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~-- 156 (779)
+|-++.|.+-||.....+..+...+|. =-+.++|...|++-- ++++.-.|..+.+...+++.|.+
T Consensus 184 lGgliIG~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A~-~rL~~l~~~g~~li~Fgi~~Pli~a 250 (327)
T PF05982_consen 184 LGGLIIGFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVAA-RRLRDLRKVGWFLIAFGILMPLINA 250 (327)
T ss_pred HHHHHHhheeCccchhhccchhhccHH------------HHHHHHHHHhhHHHH-HhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 444445555556554443333333331 124566667777542 22333334444455566677765
Q ss_pred -HHHHHHHHHhh
Q 004016 157 -VSILTTLFIRD 167 (779)
Q Consensus 157 -~g~~~~~~l~~ 167 (779)
+|..++++++.
T Consensus 251 ~ig~~lg~~~gl 262 (327)
T PF05982_consen 251 LIGIGLGWLLGL 262 (327)
T ss_pred HHHHHHHHHhCC
Confidence 45555655543
No 157
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=46.52 E-value=71 Score=30.92 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=55.0
Q ss_pred hhHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHhhHHHHHHHhcccccccccc---hhh-HHHHHHHHHHHHHhhHHH
Q 004016 307 SYLGPFILGITTPVTP---PMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQ---FNH-FLAVEMVILIAGTVKTFA 379 (779)
Q Consensus 307 ~~lGaflaGL~l~~~~---p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~---~~~-~~~~~~iiv~~~~~K~~~ 379 (779)
..-|++++|+++.+-. |..-.+......+.+++-+-+|...+|++.-...+. ... +.......++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3457788888776643 233344445556678888999999999998754442 222 222222233333444556
Q ss_pred HHHHHHhcCCChHHHHHHHHH
Q 004016 380 IVIPCLYSKIPFMDALALGLL 400 (779)
Q Consensus 380 ~~l~~~~~~~~~~~~l~lg~~ 400 (779)
.++..+++|++.. ...|..
T Consensus 103 ~~~~~~~~~~~~~--~~~G~~ 121 (154)
T TIGR01625 103 AVALIKLLRINYA--LTAGML 121 (154)
T ss_pred HHHHHHHhCCCHH--HHHHHH
Confidence 6666778899875 344543
No 158
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=46.45 E-value=1.2e+02 Score=28.81 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=25.5
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRF 663 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~ 663 (779)
+|++-|.||+|+--.|.++.+...+. -++.++++
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~ 34 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFL 34 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEe
Confidence 57899999999999999988876542 34455554
No 159
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=46.12 E-value=3.5e+02 Score=27.75 Aligned_cols=70 Identities=7% Similarity=0.080 Sum_probs=42.4
Q ss_pred HHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHHHHHHHHHcC
Q 004016 124 FFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHVILANLTELK 202 (779)
Q Consensus 124 lF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ 202 (779)
-+-.-+-=+.+.+||+++.....-..+.++.+..+..+++.++. ...+..+.+-=....|+...+-+++|
T Consensus 61 ALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl---------~~~~~~Sl~pkSVTtpiAi~is~~iG 130 (215)
T PF04172_consen 61 ALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGL---------SPEIILSLAPKSVTTPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc---------CHHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 33444445677788888888777677777777666666666653 22333333332233477777777776
No 160
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=43.95 E-value=2.3e+02 Score=27.82 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=53.0
Q ss_pred cchhhHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHhhHHHHHHHhcccccccccc---hhhHHHHHHHHHHHHHhhH
Q 004016 304 GQNSYLGPFILGITTPVTP---PMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQ---FNHFLAVEMVILIAGTVKT 377 (779)
Q Consensus 304 g~~~~lGaflaGL~l~~~~---p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~---~~~~~~~~~iiv~~~~~K~ 377 (779)
.+...-|+++.|+++..-. |.. +......+..++.+-+|...+|++.-..-+. ...+...+.- ++.++.-.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~-~~i~~~~~ 98 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG-VIITLVPL 98 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 3344456777777776542 111 3444555667888899999999998754432 2334333222 23333444
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHh
Q 004016 378 FAIVIPCL-YSKIPFMDALALGLLL 401 (779)
Q Consensus 378 ~~~~l~~~-~~~~~~~~~l~lg~~l 401 (779)
+.++..++ ++|++.-. ..|..-
T Consensus 99 ~~~~~~~~~~~~l~~~~--~~G~~a 121 (169)
T PF06826_consen 99 LIALVIGRYLFKLNPGI--AAGILA 121 (169)
T ss_pred HHHHHHHHHHcCCCHHH--HHHHHH
Confidence 55566666 88888554 445443
No 161
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=43.35 E-value=2.1e+02 Score=30.84 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=51.5
Q ss_pred hHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHH
Q 004016 78 FASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIV 157 (779)
Q Consensus 78 iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~ 157 (779)
.+-.++.|+++|. ..+++.+.+-|.. .+-.-|+-|..|-.+|++.+.+.+-..+.+|+..++++...
T Consensus 174 ~ilPlliG~ilGN----LD~~~r~fl~~~~---------~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 174 AVLPFLVGFALGN----LDPELRDFFSKAV---------QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHhc----CCHHHHHHhccCC---------CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 3445678888884 3555555444321 12245788999999999999999888888888777766666
Q ss_pred HHHHHHHHh
Q 004016 158 SILTTLFIR 166 (779)
Q Consensus 158 g~~~~~~l~ 166 (779)
.+....++.
T Consensus 241 ~~~~dr~~~ 249 (314)
T TIGR00793 241 LILADKFIG 249 (314)
T ss_pred HHHHHHHhc
Confidence 555555443
No 162
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=40.58 E-value=1.7e+02 Score=34.61 Aligned_cols=75 Identities=13% Similarity=0.268 Sum_probs=45.1
Q ss_pred HHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHHHH---------hcCCChHHHHHHHHHhhhhhh
Q 004016 336 VWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIPCL---------YSKIPFMDALALGLLLNCRGI 406 (779)
Q Consensus 336 ~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~~~---------~~~~~~~~~l~lg~~l~~kG~ 406 (779)
...+++|....-.|+.+|...+... +..++.+.+++.+.-.+.+....+ ..++++.+++.+|.++++..-
T Consensus 68 f~~~~LPpIlFe~g~~l~~~~f~~n-~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 68 FFLYLLPPIVLDAGYFMPQRNFFEN-LGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 3456788888888999998877542 222222222222222221111111 135699999999999999887
Q ss_pred hHHHH
Q 004016 407 YDIQV 411 (779)
Q Consensus 407 ~~l~~ 411 (779)
+...-
T Consensus 147 VAVla 151 (559)
T TIGR00840 147 VAVLA 151 (559)
T ss_pred HHHHH
Confidence 76553
No 163
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=40.24 E-value=11 Score=39.63 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=67.0
Q ss_pred HHHhhHHHHHHHhcccccccccch--hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHH
Q 004016 336 VWVAFIPCFIINTGRRVDLYSIQF--NHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFT 413 (779)
Q Consensus 336 ~~~lflPlFF~~~G~~~d~~~l~~--~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~ 413 (779)
.++++=++.|..+|..+|++.+.. .+.++. ..+-++ +..+++.+...++..+|+..+|.+=+.-|-.++.+.+
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPktllLG----aAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~ 156 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPKTLLLG----AAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN 156 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcHHHHhh----hHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc
Confidence 457777888999999999988743 233221 112222 2345556677789999999999887777776666544
Q ss_pred hhhhcCCCChhHHHHHH-----HHHHHHHHhHHHHHHHhhcccch
Q 004016 414 RAKQRLQITDESFAIMV-----ITAMFQSAIIIPLVKLVYDSSRK 453 (779)
Q Consensus 414 ~~~~~~~i~~~~f~~lv-----~~~ll~t~i~~plv~~l~~p~~~ 453 (779)
. +.++....+. -++++ -.+.||+.|.+-.+++|
T Consensus 157 ~------LAP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ER 194 (375)
T COG1883 157 K------LAPELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEER 194 (375)
T ss_pred c------cCHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHH
Confidence 3 3333322222 23333 56789999998766555
No 164
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=38.81 E-value=3.9e+02 Score=29.01 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=45.4
Q ss_pred hHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccch--hhHHHHHHHHHHHHHhhHHHHHHHHH
Q 004016 308 YLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF--NHFLAVEMVILIAGTVKTFAIVIPCL 385 (779)
Q Consensus 308 ~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~--~~~~~~~~iiv~~~~~K~~~~~l~~~ 385 (779)
++.+.++|...|.-...+..+.. |.. ..+.+.+.|...|++++.+++.. ..|..........++.=.+.++...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~~--~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIKP--EYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccch--hhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888875433333321 122 23336667778899999888753 34443333333333333333344444
Q ss_pred hcCCChHHHHHHHHH
Q 004016 386 YSKIPFMDALALGLL 400 (779)
Q Consensus 386 ~~~~~~~~~l~lg~~ 400 (779)
...-...+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 332112233555554
No 165
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=36.77 E-value=5.3e+02 Score=27.20 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcC
Q 004016 45 SHFPIMVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALG 89 (779)
Q Consensus 45 l~~~l~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilG 89 (779)
+.+=+|+.+-...-+++.++++.++++. .|..+-....|.++|
T Consensus 54 ~~fL~~l~~G~~~gi~~~s~~i~~ll~~--yp~~t~~fF~GLIlg 96 (257)
T PF04018_consen 54 LKFLLPLGIGILIGILLFSKVISYLLEN--YPIPTYSFFFGLILG 96 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Confidence 5666677777777788888888888875 457777778888887
No 166
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=35.69 E-value=7e+02 Score=28.26 Aligned_cols=90 Identities=13% Similarity=-0.038 Sum_probs=56.8
Q ss_pred hhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhhc-cChhHHHhcchhHHHHHHHH
Q 004016 72 PFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSAR-IDKGIVKKSGKLAIVIGVGA 150 (779)
Q Consensus 72 rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gle-~d~~~l~~~~~~~~~ia~~~ 150 (779)
-+++|..+.+|+.=+++- .+|..|+-.+. ...+..+++..-=.--+|+-+|+. +|++++.+.......+-...
T Consensus 268 ~i~ih~~a~mIi~~~i~K--~~~lvP~~~e~----~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~ 341 (414)
T PF03390_consen 268 LIGIHAYAWMIILVAIVK--AFGLVPESLEE----GAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLA 341 (414)
T ss_pred hcCCcHHHHHHHHHHHHH--HhCcCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHH
Confidence 369999999999877775 46666542211 124455556555566689999998 99999887775544443333
Q ss_pred HHHH-HHHHHHHHHHHhh
Q 004016 151 FIIP-LIVSILTTLFIRD 167 (779)
Q Consensus 151 ~l~p-~~~g~~~~~~l~~ 167 (779)
.++. .+.++.++++++.
T Consensus 342 ~Vl~~~~~a~~vG~l~g~ 359 (414)
T PF03390_consen 342 TVLGAVIGAFLVGKLVGF 359 (414)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 3333 3344555665553
No 167
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=34.93 E-value=3e+02 Score=29.39 Aligned_cols=102 Identities=8% Similarity=0.019 Sum_probs=68.1
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC----CChhhHHHHHHhhhcCCCceEEEecCCCcc------c
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT----EPTLTKKVINNVLSMSPCSIGLLYDRSLAI------D 621 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~----~~~~~~~~n~~vl~~apCsVgIlvdrg~~~------~ 621 (779)
.-.|=.|...+ ..+.+.|++.|++.++..||.-.... ....+.....+..++++++|++=-|+|.+. .
T Consensus 17 ~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al 94 (281)
T PRK06806 17 NYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEAL 94 (281)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 34566676776 47899999999999999999765441 123466677888999999999999998651 0
Q ss_pred ccccccceEEEeecCCccHHHHHHHHHHH---hcCCCeEE
Q 004016 622 YRSFQCRRVCVLFIGGADDREALALGARM---GRNPSIHL 658 (779)
Q Consensus 622 ~~~~~~~~i~v~f~GG~ddreAL~~a~rm---a~~~~v~l 658 (779)
..- . ..+++=--..+++|-++.++++ |+..++.+
T Consensus 95 ~~G--~-tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 95 EIG--F-TSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred HcC--C-CEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 000 1 2222222235778888777765 45555554
No 168
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=34.88 E-value=5.4e+02 Score=26.71 Aligned_cols=82 Identities=13% Similarity=0.070 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHH-Hh
Q 004016 109 VMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATL-EA 187 (779)
Q Consensus 109 ~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~-ls 187 (779)
.+.+..+ +|-.-.-|-.-+--+.+.+||+++....--..|.++.+..+..++.+++.. ..+..+.. -|
T Consensus 64 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~---------~~~~~Sl~pKS 132 (232)
T PRK04288 64 GDIISFF--LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLD---------NAVMASMLPQA 132 (232)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC---------HHHHHHHhhHh
Confidence 4444444 333334444555567888999988887776777777777776666666532 12222222 23
Q ss_pred hhhHHHHHHHHHHcC
Q 004016 188 TISFHVILANLTELK 202 (779)
Q Consensus 188 ~Ts~~vv~~iL~el~ 202 (779)
+| .|+...+-+++|
T Consensus 133 VT-tPIAm~is~~iG 146 (232)
T PRK04288 133 AT-TAIALPVSAGIG 146 (232)
T ss_pred hh-HHHHHHHHHHhC
Confidence 33 367767667766
No 169
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=34.83 E-value=2e+02 Score=32.08 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=31.4
Q ss_pred ccccccccceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEec
Q 004016 620 IDYRSFQCRRVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVT 666 (779)
Q Consensus 620 ~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~ 666 (779)
|-.+. . ++++.+.||.|.--|+.++.+- +.++..++|...
T Consensus 168 P~g~~--~-kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~~ 207 (371)
T TIGR00342 168 PVGTQ--G-KVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFNE 207 (371)
T ss_pred CcCcC--C-eEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 44443 5 9999999999999999888652 678888888744
No 170
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=34.61 E-value=3.2e+02 Score=27.58 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=26.2
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCC
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNP 668 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~ 668 (779)
++++++.||-|.-.|.-+ |.+ -++.+.-+||..+..
T Consensus 5 k~l~LlSGGiDSpVAa~l---m~k-rG~~V~~l~f~~~~~ 40 (197)
T PF02568_consen 5 KALALLSGGIDSPVAAWL---MMK-RGCEVIALHFDSPPF 40 (197)
T ss_dssp EEEEE-SSCCHHHHHHHH---HHC-BT-EEEEEEEE-TTT
T ss_pred eEEEEecCCccHHHHHHH---HHH-CCCEEEEEEEECCCC
Confidence 899999999999887643 333 499999999986543
No 171
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=34.33 E-value=3.7e+02 Score=29.35 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHH
Q 004016 365 VEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFTRAKQRLQITDESFAIMVITA 433 (779)
Q Consensus 365 ~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ 433 (779)
+...++++++.-+++-.+..++.|++..|+..++..-+.-..++++.+...++..-+.-+-|...++..
T Consensus 57 ~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~al 125 (327)
T PF05982_consen 57 LLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLAL 125 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHH
Confidence 344455555556666666666789999999999988888888888888888887777777666554443
No 172
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=34.14 E-value=2.6e+02 Score=31.90 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=42.7
Q ss_pred eEEEeecCCccHHHHHHHHHHHh-cCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcC
Q 004016 629 RVCVLFIGGADDREALALGARMG-RNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNL 691 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~ 691 (779)
+|++-+.||+|.--.|.+..++. ..++.+++++|+-.+-. .+.+.+.++.+++.++..
T Consensus 17 ~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr-----~~s~~~~~~~~~~~~~l~ 75 (436)
T PRK10660 17 QILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS-----PNADSWVKHCEQVCQQWQ 75 (436)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC-----cchHHHHHHHHHHHHHcC
Confidence 89999999999998888888776 45688999999964321 123334577888877653
No 173
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=32.33 E-value=85 Score=34.07 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=43.7
Q ss_pred eEEEeecC-CccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeecChH
Q 004016 629 RVCVLFIG-GADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEGF 707 (779)
Q Consensus 629 ~i~v~f~G-G~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~ 707 (779)
+|+|+... |+.-+.-+..+.+ +.|.+++++....-.. + +...
T Consensus 16 ~I~vITs~~gAa~~D~~~~~~~--r~~~~~~~~~p~~vQG--------~---------------------------~A~~ 58 (319)
T PF02601_consen 16 RIAVITSPTGAAIQDFLRTLKR--RNPIVEIILYPASVQG--------E---------------------------GAAA 58 (319)
T ss_pred EEEEEeCCchHHHHHHHHHHHH--hCCCcEEEEEeccccc--------c---------------------------chHH
Confidence 78888865 4566777777777 7777777755543211 0 1234
Q ss_pred HHHHHHHhhhc-----CCcEEEEcccCCC
Q 004016 708 ETLRIINAIAN-----DFDLFLAGRRHEG 731 (779)
Q Consensus 708 e~~~~i~~~~~-----~~dL~iVGr~~~~ 731 (779)
++.++|+.+.. +||++|++|++|.
T Consensus 59 ~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 59 SIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHhccccccccEEEEecCCCC
Confidence 56666666643 5999999999885
No 174
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=31.37 E-value=4.2e+02 Score=29.24 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=47.4
Q ss_pred hhhHHHHHHHhhcCCCCCch-----hHHHHHHHHHHHHhhHHHHHHHhcccccccccch-hhHHHHHHHHHHHHHhhHHH
Q 004016 306 NSYLGPFILGITTPVTPPMG-----SLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQF-NHFLAVEMVILIAGTVKTFA 379 (779)
Q Consensus 306 ~~~lGaflaGL~l~~~~p~~-----~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~-~~~~~~~~iiv~~~~~K~~~ 379 (779)
++.+=+.++|+++.-.++.. ..+.+-++.+ .+...|+-.+..|..+....... ..+......+++.++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 44444555555554433222 4455555554 67889999999998887543321 12222223344455555555
Q ss_pred HHHHHHhcCCChH
Q 004016 380 IVIPCLYSKIPFM 392 (779)
Q Consensus 380 ~~l~~~~~~~~~~ 392 (779)
++...+..+++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 6666666676544
No 175
>COG2035 Predicted membrane protein [Function unknown]
Probab=30.35 E-value=3.9e+02 Score=28.34 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=36.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHhcC--ccccCCc
Q 004016 45 SHFPIMVVFLPMLLVTILTYAIQLLLKPFGEAAFASQLLGGIALG--PSLLSRN 96 (779)
Q Consensus 45 l~~~l~~~l~~l~lil~~~~l~~~ll~rl~~P~iv~~IlaGiilG--P~~lg~~ 96 (779)
+.+=+|+..--+..++.+++++.++++. .|.++-...+|.++| |+.++.+
T Consensus 55 ~~fLi~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~i 106 (276)
T COG2035 55 VLFLIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKEI 106 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777788889999998887 566666667999998 5655554
No 176
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=29.50 E-value=1.4e+02 Score=28.70 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=32.3
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
++++-|.||+|+.-.|.++.+...+. .++++-.. .|-.--.++++++.++.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg-------~e~p~t~~~~~~~~~~~ 51 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTG-------YEFPETYEFVDELAKRY 51 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-S-------TB-HHHHHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecC-------ccCHHHHHHHHHHHhhh
Confidence 57899999999999999999998884 44444322 11111246666666654
No 177
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=29.39 E-value=8.9e+02 Score=27.56 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=24.1
Q ss_pred ChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004016 132 DKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDG 168 (779)
Q Consensus 132 d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~ 168 (779)
|.+++.|.+.|.+..-+...++..++|..++..+.+.
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~pg 102 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQPG 102 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6677777777776655555666666777666666543
No 178
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=29.35 E-value=2.2e+02 Score=27.39 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=47.3
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeecChHH
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEGFE 708 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~e 708 (779)
+|++.+.||.|.--++.++.+. +..+..+++..... ...|.+.++++.++.. .. .|... ++ ..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~g--~~-~~~~~--~~-~~ 63 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQR-------HAKEEEAAKLIAEKLG--PS-TYVPA--RN-LI 63 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCC-------ChhHHHHHHHHHHHHC--CC-EEEeC--cC-HH
Confidence 5789999999999999888763 23455566643211 0113355555555433 11 22111 11 12
Q ss_pred HHHHHHhh--hcCCcEEEEcccCC
Q 004016 709 TLRIINAI--ANDFDLFLAGRRHE 730 (779)
Q Consensus 709 ~~~~i~~~--~~~~dL~iVGr~~~ 730 (779)
..+.+.+. ..++|-++.|-..+
T Consensus 64 ~~~~l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 64 FLSIAAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccC
Confidence 22344443 24789999997764
No 179
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=28.40 E-value=1.1e+03 Score=28.47 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=33.4
Q ss_pred HHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHH
Q 004016 69 LLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFT 126 (779)
Q Consensus 69 ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~ 126 (779)
++..+|+|+++.-+++|..++-++.=. +...+.=+-+.+.--++.-+.+|..+.++.
T Consensus 392 i~~~~RlPR~l~a~l~G~~La~sG~~l-Q~~~rNpLa~P~ilGi~sgA~lg~~~~~~~ 448 (668)
T PRK10577 392 ALLPLRLPRLLAALLAGAMLAVAGTLL-QRLTRNPLASPEVLGISSGAGLGVVLALFL 448 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCccHhhHHHHHHHHHHHHHHH
Confidence 567889999999999999998554111 111111111123334455566776665554
No 180
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=28.17 E-value=8.2e+02 Score=26.75 Aligned_cols=57 Identities=9% Similarity=0.055 Sum_probs=34.1
Q ss_pred HHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHH
Q 004016 69 LLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFT 126 (779)
Q Consensus 69 ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~ 126 (779)
+...+|+|+++.-+++|..+|-++.=. +...+.=.-+.+.--++.-+.+|.++.+|.
T Consensus 48 ii~~~RlPRil~a~lvG~~La~sG~i~-Q~l~rNpLa~P~iLGissGA~l~~~l~~~~ 104 (325)
T TIGR03869 48 IVWDLRLPRVLTAAAVGAGLAIAGAVM-QSLTRNPLADPYLLGLSSGASLGAVAVLVL 104 (325)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999998543110 111000011123444556677777777765
No 181
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=27.84 E-value=6.9e+02 Score=25.81 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHH-HhhhhHHHHHHH
Q 004016 119 GLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATL-EATISFHVILAN 197 (779)
Q Consensus 119 Gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~i 197 (779)
|-.-.-|..-+--+.+.+||+++.....-..|.++.+..+..++..++.. ..+..+.+ -|+| .|+...+
T Consensus 66 gPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~---------~~i~~Sl~pkSvT-tpiAm~v 135 (226)
T TIGR00659 66 GPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLG---------PEIIASLLPKSVT-TPIAMHV 135 (226)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC---------HHHHHHhhhHHhh-HHHHHHH
Confidence 33333444555567788888888777766667776666666666666532 12222222 2333 3666666
Q ss_pred HHHcC
Q 004016 198 LTELK 202 (779)
Q Consensus 198 L~el~ 202 (779)
-+++|
T Consensus 136 s~~iG 140 (226)
T TIGR00659 136 SEMIG 140 (226)
T ss_pred HHHhC
Confidence 66665
No 182
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=27.72 E-value=8e+02 Score=30.33 Aligned_cols=82 Identities=18% Similarity=0.104 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhhhhHHH--HH
Q 004016 118 VGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEATISFHV--IL 195 (779)
Q Consensus 118 lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~v--v~ 195 (779)
+-+-++....|++.|+..+.+ +.............-++.+.+.+++. + . ++..++.+|.+++.=..-- +.
T Consensus 314 ~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~-k-~-----p~~~~l~l~~lm~~kgl~el~~~ 385 (769)
T KOG1650|consen 314 LLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYC-K-L-----PLRDSLALGLLMSTKGLVELIVL 385 (769)
T ss_pred HHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-c-C-----chhHHHHHHHHHHhhhHHHHHHH
Confidence 344556677899999999988 22222222222223334444444422 2 2 3577888888877544222 22
Q ss_pred HHHHHcCccCCh
Q 004016 196 ANLTELKLLNSE 207 (779)
Q Consensus 196 ~iL~el~l~~s~ 207 (779)
..-.|.|..+++
T Consensus 386 ~~~~~~~~~~~~ 397 (769)
T KOG1650|consen 386 NTGLDRKILSDE 397 (769)
T ss_pred HHHhhcCCcccc
Confidence 233455554444
No 183
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=27.19 E-value=1.1e+03 Score=28.24 Aligned_cols=56 Identities=14% Similarity=-0.070 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhcCccchhhhhhHHHHHHHHhhhhHHHHH-HHHHHcC
Q 004016 144 IVIGVGAFIIPLIVSILTTLFI-RDGLELDDELRSTLPMVATLEATISFHVIL-ANLTELK 202 (779)
Q Consensus 144 ~~ia~~~~l~p~~~g~~~~~~l-~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~-~iL~el~ 202 (779)
..++.++..+.+++.+++..++ +..+. . +...++.+++-+++=+..++. ++-+|++
T Consensus 465 glva~iAL~~~l~l~l~vmsll~G~tLt--L-pgIAGiILtIGmaVDanIVI~ERIrEel~ 522 (604)
T PRK12933 465 GWVANVALIANMVCLFGLLALIPGAVLT--L-PGIAGLVLTVGMAVDTNVLIFERIKDKLK 522 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccc--H-HHHHHHHHHHHhhccCcEEEehHHHHHHH
Confidence 3344445555555554444444 32221 1 134555555555555555555 4545554
No 184
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=26.88 E-value=5.3e+02 Score=28.66 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhc------CCCCCCch-hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHH
Q 004016 257 VIIIVFVVRPIIFWMMRKT------PEGKPLKQ-DHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLA 329 (779)
Q Consensus 257 ~~~~~~v~r~~~~~l~~~~------~~~~~~~e-~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~ 329 (779)
..++-.+-+|+++++..+. ...++++. -.+.+-+...++++.+. =.-.+.+|.+.+|-.+.+.. .-+++.
T Consensus 230 MaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsG-Vv~rLs 306 (433)
T PRK15475 230 MALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESG-VVERLS 306 (433)
T ss_pred HHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhc-cHHHHH
Confidence 3344445566777664321 12223322 23455555555555441 22357899999999998763 233343
Q ss_pred HHHHHHHHHhhHHHHHHHhcccccccccc
Q 004016 330 DKIQYFVWVAFIPCFIINTGRRVDLYSIQ 358 (779)
Q Consensus 330 ~kl~~~~~~lflPlFF~~~G~~~d~~~l~ 358 (779)
+..+.-..++..-+.-..+|.+.+-+.+-
T Consensus 307 ~taqn~L~nivTIfLGl~VGa~~~A~~FL 335 (433)
T PRK15475 307 DTVQNGLINIVTIFLGLSVGAKLVADKFL 335 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHhhC
Confidence 33333222333333345677777665553
No 185
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=26.69 E-value=3.5e+02 Score=26.46 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=53.7
Q ss_pred eecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeecChHHHHHH
Q 004016 633 LFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEGFETLRI 712 (779)
Q Consensus 633 ~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~e~~~~ 712 (779)
+..||. ..-...+|+.|+++...++.++. ... .++.-+++.+++++.. ..+|.|...-+.|.+++.++
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~---r~~-----~~~~~~~~~i~~l~~~---g~~v~~~~~Dv~d~~~v~~~ 71 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLG---RSG-----APSAEAEAAIRELESA---GARVEYVQCDVTDPEAVAAA 71 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEE---SSG-----GGSTTHHHHHHHHHHT---T-EEEEEE--TTSHHHHHHH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEec---cCC-----CccHHHHHHHHHHHhC---CCceeeeccCccCHHHHHHH
Confidence 445554 56888999999999987776333 211 1122234677777764 35899988889999999999
Q ss_pred HHhhhcCC---cEEEEcccCC
Q 004016 713 INAIANDF---DLFLAGRRHE 730 (779)
Q Consensus 713 i~~~~~~~---dL~iVGr~~~ 730 (779)
+.+...++ |-+|-+++..
T Consensus 72 ~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 72 LAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp HHTSHTTSS-EEEEEE-----
T ss_pred HHHHHhccCCcceeeeeeeee
Confidence 99887665 5677776643
No 186
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=25.82 E-value=3.7e+02 Score=26.21 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEE---eecChHHHHHHHH
Q 004016 638 ADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEE---GVEEGFETLRIIN 714 (779)
Q Consensus 638 ~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~---~v~~~~e~~~~i~ 714 (779)
+.|.|+++.|++|++ .+.+++++-+-.+ .++..+++... ..-+++-..+- .-.+.+...+++.
T Consensus 19 ~~~~e~l~~A~~l~~-~~~~v~~v~~G~~-----------~~~~~~~~~~~--~Gad~v~~~~~~~~~~~~~~~~a~~l~ 84 (181)
T cd01985 19 PLDLEAVEAALRLKE-YGGEVTALVIGPP-----------AAEVALREALA--MGADKVLLVEDPALAGYDPEATAKALA 84 (181)
T ss_pred HhhHHHHHHHHHHhh-cCCeEEEEEECCh-----------HHHHHHHHHHH--hCCCEEEEEecCcccCCChHHHHHHHH
Confidence 788999999999987 4456665554321 11122222211 12233433221 0112344445555
Q ss_pred hh--hcCCcEEEEcccCCCC--cccccccccc
Q 004016 715 AI--ANDFDLFLAGRRHEGC--LHVLQGLGEW 742 (779)
Q Consensus 715 ~~--~~~~dL~iVGr~~~~~--s~~~~gl~~w 742 (779)
++ +.++|+++.|.+.... .|.++...+|
T Consensus 85 ~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~ 116 (181)
T cd01985 85 ALIKKEKPDLILAGATSIGKQLAPRVAALLGV 116 (181)
T ss_pred HHHHHhCCCEEEECCcccccCHHHHHHHHhCC
Confidence 44 2379999999996532 3445544455
No 187
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=25.63 E-value=4.6e+02 Score=24.63 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=19.6
Q ss_pred eEEEeecCCccHHHHHHHHHHHh
Q 004016 629 RVCVLFIGGADDREALALGARMG 651 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma 651 (779)
.+++.+.||.|.--++.++.+.-
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~ 25 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY 25 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh
Confidence 68999999999999998887653
No 188
>COG2431 Predicted membrane protein [Function unknown]
Probab=25.62 E-value=8.4e+02 Score=26.03 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHHHHhhHHHHHHHHHhcCCChHHHHHHHHHhhhhhhhHHHHHH
Q 004016 370 LIAGTVKTFAIVIPCLYSKIPFMDALALGLLLNCRGIYDIQVFT 413 (779)
Q Consensus 370 v~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l~~kG~~~l~~~~ 413 (779)
++..++-.++..+++.+.++|+.++++++..++=-......+..
T Consensus 170 ~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 170 FITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 44455778888899999999999999998876665555555554
No 189
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=25.46 E-value=8.1e+02 Score=26.51 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHhhhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHH
Q 004016 67 QLLLKPFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFMFFTL 127 (779)
Q Consensus 67 ~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~ 127 (779)
..+...+|+|+++.-+++|..+|-++.=. +...+.=.-+.+.--++.-+.+|.+..++..
T Consensus 35 ~~ii~~~RlPR~l~a~l~G~~La~sG~~l-Q~~~rNpLA~P~iLGissgA~lg~~~~~~~~ 94 (311)
T PF01032_consen 35 QFIIWDLRLPRILAAILVGAALALSGALL-QTLTRNPLADPSILGISSGASLGAVLAILLF 94 (311)
T ss_dssp HHHHCCTCHHHHHHHHHHHHHHHHHHHHH-HHHTT-TT--TTTTTHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHhCCCccccccchHhHHHHHHHHHHHHHh
Confidence 45667889999999999999887443110 0000000111223334556677777666554
No 190
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=24.98 E-value=6e+02 Score=28.25 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHh------cCCCCCCchh-HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHH
Q 004016 257 VIIIVFVVRPIIFWMMRK------TPEGKPLKQD-HLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLA 329 (779)
Q Consensus 257 ~~~~~~v~r~~~~~l~~~------~~~~~~~~e~-~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~ 329 (779)
..++-.+-+|+++++..+ ....++++.. .+.+-+...++++.+. =.-.+.+|.+.+|-.+.+.. .-+++.
T Consensus 230 MaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsG-Vv~rLs 306 (433)
T PRK15477 230 MALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESG-VVERLS 306 (433)
T ss_pred HHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhc-cHHHHH
Confidence 333444555666665422 1122233222 3455555555555441 22358899999999998763 233343
Q ss_pred HHHHHHHHHhhHHHHHHHhcccccccccc
Q 004016 330 DKIQYFVWVAFIPCFIINTGRRVDLYSIQ 358 (779)
Q Consensus 330 ~kl~~~~~~lflPlFF~~~G~~~d~~~l~ 358 (779)
+..+.-..++..-+.-..+|.+.+-+.+-
T Consensus 307 ~taqn~L~nivTIfLGl~VGa~~~A~~FL 335 (433)
T PRK15477 307 DTVQNGLINIVTIFLGLSVGAKLVADKFL 335 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHhhC
Confidence 33333222333333345677777665553
No 191
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=24.95 E-value=6e+02 Score=28.25 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHh------cCCCCCCchh-HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCCCchhHHH
Q 004016 257 VIIIVFVVRPIIFWMMRK------TPEGKPLKQD-HLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTPPMGSLLA 329 (779)
Q Consensus 257 ~~~~~~v~r~~~~~l~~~------~~~~~~~~e~-~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~p~~~~l~ 329 (779)
..++-.+-+|+++++..+ ....++++.. .+.+-+...++++.+. =.-.+.+|.+.+|-.+.+.. .-+++.
T Consensus 230 MaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsG-Vv~rLs 306 (433)
T PRK15476 230 MALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESG-VVERLS 306 (433)
T ss_pred HHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhc-cHHHHH
Confidence 333444555666665422 1122233222 3455555555555441 22358899999999998763 233343
Q ss_pred HHHHHHHHHhhHHHHHHHhcccccccccc
Q 004016 330 DKIQYFVWVAFIPCFIINTGRRVDLYSIQ 358 (779)
Q Consensus 330 ~kl~~~~~~lflPlFF~~~G~~~d~~~l~ 358 (779)
+..+.-..++..-+.-..+|.+.+-+.+-
T Consensus 307 ~taqn~L~nivTIfLGl~VGa~~~A~~FL 335 (433)
T PRK15476 307 DTVQNGLINIVTIFLGLSVGAKLVADKFL 335 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHhhC
Confidence 33333222333333345677777665553
No 192
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=24.93 E-value=7e+02 Score=24.87 Aligned_cols=25 Identities=28% Similarity=0.838 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004016 250 NVSVIVMVIIIVFVVRPIIFWMMRK 274 (779)
Q Consensus 250 ~~~~i~~~~~~~~v~r~~~~~l~~~ 274 (779)
+++.+.-....+++.+|+..|+.+|
T Consensus 165 ~iGvi~~~~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 165 IIGVIIGTYSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344444445677888888888764
No 193
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=24.78 E-value=1e+03 Score=26.63 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=15.8
Q ss_pred HHHHHHhhhCCchhHHHHHHHHhc
Q 004016 65 AIQLLLKPFGEAAFASQLLGGIAL 88 (779)
Q Consensus 65 l~~~ll~rl~~P~iv~~IlaGiil 88 (779)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 334566666788877777776554
No 194
>COG0679 Predicted permeases [General function prediction only]
Probab=23.88 E-value=9.3e+02 Score=25.93 Aligned_cols=135 Identities=9% Similarity=0.072 Sum_probs=78.2
Q ss_pred chhhHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhHHHHHHH
Q 004016 305 QNSYLGPFILGITTPVT-PPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFAIVIP 383 (779)
Q Consensus 305 ~~~~lGaflaGL~l~~~-~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~~~l~ 383 (779)
.+|.+=|+++|+++... -+....+.+-++.+ .+--.|+-.+..|+.++..................-.+...+.+++.
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777632 23344555555555 78889999999999999855543323322222232355667777788
Q ss_pred HHhcCCChHHHHHHHHH--hhhhhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHH
Q 004016 384 CLYSKIPFMDALALGLL--LNCRGIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLV 444 (779)
Q Consensus 384 ~~~~~~~~~~~l~lg~~--l~~kG~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv 444 (779)
++.++++..+.. ...+ ..|.+....+++. +.+.-.+..-+.+.++.+++-...|...
T Consensus 246 ~~~~~l~~~~~~-v~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist~ls~~t~p~~~ 304 (311)
T COG0679 246 AKLLGLSGLALQ-VLVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLSTLLSLLTLPLLI 304 (311)
T ss_pred HHHcCCChHHHH-HHHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888766552 2222 3455555444444 3444444555556666666443333333
No 195
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.85 E-value=1.3e+02 Score=34.10 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.3
Q ss_pred ChHHHHHHHHhhhc--CCcEEEEcccCCC
Q 004016 705 EGFETLRIINAIAN--DFDLFLAGRRHEG 731 (779)
Q Consensus 705 ~~~e~~~~i~~~~~--~~dL~iVGr~~~~ 731 (779)
.+.|++++|+.++. +.|++||||+.|.
T Consensus 177 A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 177 AAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred cHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 45578888888755 4999999999874
No 196
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=23.49 E-value=3.8e+02 Score=28.21 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=17.4
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcC
Q 004016 629 RVCVLFIGGADDREALALGARMGRN 653 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~ 653 (779)
.+++.|.||+|+-..|.++.+...+
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~ 65 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPD 65 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCC
Confidence 4567777777777777777766665
No 197
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=23.22 E-value=9.8e+02 Score=25.93 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCccCCh
Q 004016 191 FHVILANLTELKLLNSE 207 (779)
Q Consensus 191 ~~vv~~iL~el~l~~s~ 207 (779)
.|++.++.++.|+-+++
T Consensus 117 ~Pi~~~~~~~~~i~~~~ 133 (351)
T PF03600_consen 117 IPIVLSLARKLGIPPSP 133 (351)
T ss_pred HHHHHHHHHHcCCChHH
Confidence 38888888888865443
No 198
>COG4827 Predicted transporter [General function prediction only]
Probab=23.06 E-value=8.1e+02 Score=24.93 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhccChhHHHh--cchhHHHHHHH-HHHHHHHHH
Q 004016 116 ECVGLIFMFFTLSARIDKGIVKK--SGKLAIVIGVG-AFIIPLIVS 158 (779)
Q Consensus 116 ~~lGl~~llF~~Gle~d~~~l~~--~~~~~~~ia~~-~~l~p~~~g 158 (779)
-..|..+.+|..|+++-+..=.. ..|++..|+.. +++++++.+
T Consensus 11 ~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~g 56 (239)
T COG4827 11 YVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGG 56 (239)
T ss_pred HHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999887764211 12345555554 445555443
No 199
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.94 E-value=3.2e+02 Score=29.32 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=51.9
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc----CCChhhHHHHHHhhhcCCCceEEEecCCCc
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK----TEPTLTKKVINNVLSMSPCSIGLLYDRSLA 619 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~----~~~~~~~~~n~~vl~~apCsVgIlvdrg~~ 619 (779)
.-.|-.|...+ ..+.+.|++.|++.++..||.-... .....+....+...++++++|++=-|.|.+
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 17 GYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 34566676676 4789999999999999999965543 123456777889999999999999999975
No 200
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.86 E-value=2.3e+02 Score=25.31 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHhh
Q 004016 150 AFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATLEAT 188 (779)
Q Consensus 150 ~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 188 (779)
++++|.++|..++.++...++.........+++|++.+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 346788888888888877664322112334445555443
No 201
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.84 E-value=4.4e+02 Score=21.89 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q 004016 248 LMNVSVIVMVIIIVFVVRPIIFWMMRKTPEGKPLKQDH 285 (779)
Q Consensus 248 ~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~ 285 (779)
+..++.++.++..+|+.|..+....+.+| |+.|-.
T Consensus 9 ~ivl~ll~G~~~G~fiark~~~k~lk~NP---pine~~ 43 (71)
T COG3763 9 LIVLALLAGLIGGFFIARKQMKKQLKDNP---PINEEM 43 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCHHH
Confidence 33444445555567888888887888877 345443
No 202
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=22.75 E-value=6.7e+02 Score=23.89 Aligned_cols=109 Identities=6% Similarity=-0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcch---hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccccccccchhh
Q 004016 285 HLVALNVIVLVVALVGELTGQN---SYLGPFILGITTPVTPPMGSLLADKIQYFVWVAFIPCFIINTGRRVDLYSIQFNH 361 (779)
Q Consensus 285 ~~~~il~~~l~~~~~se~lg~~---~~lGaflaGL~l~~~~p~~~~l~~kl~~~~~~lflPlFF~~~G~~~d~~~l~~~~ 361 (779)
++.+++++.++.-.++..++++ +++|-++.=+.+--.....+.+.+--+.+...+-+=+.=+.+|.-..++.+....
T Consensus 12 ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPagVGim~~~~ll~~~~ 91 (141)
T PRK04125 12 QAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLCTKVVKLEQVESLGTALTNNIGFLFVPSGISVINSLGVMSQYP 91 (141)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhHhHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCChHH
Q 004016 362 FLAVEMVILIAGTVKTFAIVIPCLYSKIPFMD 393 (779)
Q Consensus 362 ~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~ 393 (779)
|.+.+.+++..+++=...++...++.+...+.
T Consensus 92 ~~Il~~ivvSTllvl~vtg~v~~~l~r~~~~~ 123 (141)
T PRK04125 92 VQIIGVIIVATILLLACTGLFSQFILGKTEKE 123 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
No 203
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=22.57 E-value=1e+03 Score=25.94 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=46.2
Q ss_pred Hhcccccccccch--hhHHHHHHHHHHHHHhhHHHHHHHHHh-cCCChHHHHHHHHHh---hhhhhhHHHHHHhhhhcCC
Q 004016 347 NTGRRVDLYSIQF--NHFLAVEMVILIAGTVKTFAIVIPCLY-SKIPFMDALALGLLL---NCRGIYDIQVFTRAKQRLQ 420 (779)
Q Consensus 347 ~~G~~~d~~~l~~--~~~~~~~~iiv~~~~~K~~~~~l~~~~-~~~~~~~~l~lg~~l---~~kG~~~l~~~~~~~~~~~ 420 (779)
..|++++++++.. ..+....+..+.-++...+.++..++. ++.+.. +.+|+.+ +|-|..+.+....+ .|-
T Consensus 55 ~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA--kGn 130 (328)
T TIGR00832 55 PPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA--KGD 130 (328)
T ss_pred HhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc--CCC
Confidence 3456666666643 233334444444555666667766664 365543 6666543 44454444444433 332
Q ss_pred CChhHHHHHHHHHHHHHHhHHHHHHHh
Q 004016 421 ITDESFAIMVITAMFQSAIIIPLVKLV 447 (779)
Q Consensus 421 i~~~~f~~lv~~~ll~t~i~~plv~~l 447 (779)
.. -.-+...++.+++..++||++..+
T Consensus 131 va-lsv~lt~~stLl~~~~~P~l~~ll 156 (328)
T TIGR00832 131 PE-YTLVLVAVNSLFQVFLYAPLAWLL 156 (328)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122223344444444455555544
No 204
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=22.49 E-value=5.6e+02 Score=28.61 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccch--hhhhhHHHHH--HHHhh
Q 004016 113 NVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDD--ELRSTLPMVA--TLEAT 188 (779)
Q Consensus 113 ~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~--~~~~~~l~lg--~~ls~ 188 (779)
-.++=+|+..++-..-.+.+.+.+.+.++-...+.....+.-++.-....+.+.+ ..+-. .....+++.+ ..-|.
T Consensus 181 ~~~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~-~np~~~~~~~~~~~l~Af~T~SS~ 259 (390)
T PF00375_consen 181 MKLAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTR-KNPFKFLKAMLPALLTAFSTSSSA 259 (390)
T ss_dssp TTTHHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT---HHHHHHHTHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcC-CCHHHHHHHHHHHHHHHhhccCCC
Confidence 3355677777777777788888888776554444333333222222222221221 11100 0112233333 23345
Q ss_pred hhHHHHHHHHHH-cCccCChhHHHH
Q 004016 189 ISFHVILANLTE-LKLLNSEIGRLA 212 (779)
Q Consensus 189 Ts~~vv~~iL~e-l~l~~s~~g~l~ 212 (779)
...|+..+.++| +| .+++..+.+
T Consensus 260 atlP~~~~~~~~~~g-v~~~i~~fv 283 (390)
T PF00375_consen 260 ATLPVTIECLEENLG-VSRSIASFV 283 (390)
T ss_dssp TSHHHHHHHHHT-TT---HHHHHHH
T ss_pred CCchhHHHHHHHhcC-CCcccceee
Confidence 568899888888 56 466666666
No 205
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=22.45 E-value=1.3e+02 Score=32.40 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=37.2
Q ss_pred EEEEEeecChHHHHHHHHhhhc-CCcEEEEcccCCCCcccccccccccCCCccchh
Q 004016 697 EYVEEGVEEGFETLRIINAIAN-DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVV 751 (779)
Q Consensus 697 ~y~e~~v~~~~e~~~~i~~~~~-~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~i 751 (779)
++.++..+...|..+..+++.. +||++|++-+-|.-+.+..||-+=...| ||+|
T Consensus 35 ~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-Lgil 89 (301)
T COG1597 35 ELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGIL 89 (301)
T ss_pred eEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEEe
Confidence 3444444444466666766655 6999999999887788888887665555 6654
No 206
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=21.83 E-value=2e+02 Score=30.09 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.0
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCC--CeEEEEEEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNP--SIHLTVTRFV 664 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltv~~~~ 664 (779)
+|+|.+.||+|.--.|.++.++.++. +.++..+|+-
T Consensus 31 kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 31 RVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 89999999999998888888887553 4577777764
No 207
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=21.75 E-value=2.1e+02 Score=30.46 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=42.5
Q ss_pred cceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 627 CRRVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 627 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
+ +|+|-+.||+|.--+|.+..++.++ ..+.++|+-..-.. +.+.+.+..+++.+..
T Consensus 22 ~-~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 22 Y-KILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----YSDQEAELVEKLCEKL 77 (298)
T ss_pred C-eEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----ccchHHHHHHHHHHHh
Confidence 5 8999999999999999999999988 88888888654211 1234456666776654
No 208
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=21.69 E-value=8.6e+02 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcchhh-HHHHHHHhh
Q 004016 293 VLVVALVGELTGQNSY-LGPFILGIT 317 (779)
Q Consensus 293 ~l~~~~~se~lg~~~~-lGaflaGL~ 317 (779)
.++..+..+++|-.++ ..+++.|++
T Consensus 139 ~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 139 LLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 3355667788887765 467777774
No 209
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=21.51 E-value=1.3e+03 Score=26.67 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHhhhhhhhHHHHHHhh
Q 004016 389 IPFMDALALGLLLNCRGIYDIQVFTRA 415 (779)
Q Consensus 389 ~~~~~~l~lg~~l~~kG~~~l~~~~~~ 415 (779)
+|..|+..-|+ ++.-|-+-.++....
T Consensus 389 yPv~E~tSsGl-l~~~gq~f~~~~~~~ 414 (480)
T KOG2563|consen 389 YPVAEGTSSGL-LNLSGQIFGVILVFI 414 (480)
T ss_pred cccCCccccee-EEeehhHHHHHHHHH
Confidence 67788888887 566666555554443
No 210
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=21.22 E-value=2.9e+02 Score=25.26 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=54.4
Q ss_pred ceEEEEEeeeccCCCCccccccccCC-CCCCCCCCcchhHHHHHHHHHHhcCcceEEEEEEEeccCCChHHHHHHHHhhc
Q 004016 500 VGVYVMNLEEYIGRSMPVVIPHRLDK-NPSSSKPAKIDPLLHAFFRYQQTNKAYVSVQCFTAVAPYASMHDDICSMAFQK 578 (779)
Q Consensus 500 ~~v~~lhlvel~~r~~~~~~~~~~~~-~~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~ 578 (779)
-.|.-+|++|.++-.. -+..++.-- .+..-.....+...+-++...+.+...+-++.-. .+..+.+++.+.|+++
T Consensus 23 r~V~~v~v~e~~d~~~-~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~---~~~~iP~~~i~~A~~~ 98 (123)
T PF07905_consen 23 RPVRWVHVMEAPDPSD-WLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGR---YLDEIPEEIIELADEL 98 (123)
T ss_pred CcEEEEEEeecCCHHH-hCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccC---ccccCCHHHHHHHHHc
Confidence 3577888888874322 222221100 0000011112335555666655544445554321 3348899999999999
Q ss_pred CccEEEeccccCCChhhHHHHHHhhh
Q 004016 579 ATSLIIFPFLKTEPTLTKKVINNVLS 604 (779)
Q Consensus 579 ~~~lIilp~h~~~~~~~~~~n~~vl~ 604 (779)
+-.++.+||+ ..|.++.+.|.+
T Consensus 99 ~lPli~ip~~----~~f~~I~~~v~~ 120 (123)
T PF07905_consen 99 GLPLIEIPWE----VPFSDITREVMR 120 (123)
T ss_pred CCCEEEeCCC----CCHHHHHHHHHH
Confidence 9999999995 345555555543
No 211
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=21.17 E-value=7.7e+02 Score=23.99 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=26.8
Q ss_pred hhHHHHHHHHhcCccc---cCCcchhhhhcCCccchHHHHHHHHHHHHHHHHHHhh
Q 004016 77 AFASQLLGGIALGPSL---LSRNQELKELVFPPKAVMAINVIECVGLIFMFFTLSA 129 (779)
Q Consensus 77 ~iv~~IlaGiilGP~~---lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~llF~~Gl 129 (779)
.-+..+++|+++||.. .+...+....+++.. ..++-.|.++--|.+|+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g-----~~~afpg~~~~a~laGl 84 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLG-----TVLAFPGGMPGALLAGL 84 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHHHH
Confidence 5788999999999953 122222222222210 11233366667777777
No 212
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.14 E-value=3.5e+02 Score=28.97 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=51.1
Q ss_pred eEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc----CCChhhHHHHHHhhhcCCCceEEEecCCCc
Q 004016 553 VSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK----TEPTLTKKVINNVLSMSPCSIGLLYDRSLA 619 (779)
Q Consensus 553 v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~----~~~~~~~~~n~~vl~~apCsVgIlvdrg~~ 619 (779)
-.|=.|...+ ..+.+.+++.|++.++..||.-... ..-..+....+...++++++|++=-|.|..
T Consensus 18 yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 18 YAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred CeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 3466666666 4789999999999999999876544 123456777888999999999999999975
No 213
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=20.96 E-value=1.1e+03 Score=25.68 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=20.0
Q ss_pred HHhhhCCchhHHHHHHHHhcCccc
Q 004016 69 LLKPFGEAAFASQLLGGIALGPSL 92 (779)
Q Consensus 69 ll~rl~~P~iv~~IlaGiilGP~~ 92 (779)
+...+|+|+++.-+++|..++=++
T Consensus 46 ii~~~RlPR~l~a~l~G~~La~sG 69 (323)
T PRK11228 46 LVQNLRLPRSLVAVLIGASLALAG 69 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999998543
No 214
>COG3371 Predicted membrane protein [Function unknown]
Probab=20.67 E-value=5.8e+02 Score=25.37 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=50.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh-hhCCchhHHHHHHHHhcCccccCCcchhhhhcCCccchHHHHHHHHHHHHHH
Q 004016 45 SHFPIMVVFLPMLLVTILTYAIQLLLK-PFGEAAFASQLLGGIALGPSLLSRNQELKELVFPPKAVMAINVIECVGLIFM 123 (779)
Q Consensus 45 l~~~l~~~l~~l~lil~~~~l~~~ll~-rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lGl~~l 123 (779)
+-+...+.+.-+..++.. ..+.| |.+-+.-.-++++|+.+. ..|..| ++. .-..+......++
T Consensus 49 ~ifN~glIl~Gll~i~~s----~~l~r~k~~~~g~~ll~is~lfLa--LVGVFp--------Egt--~pH~~vs~~ffll 112 (181)
T COG3371 49 WIFNTGLILLGLLVILFS----ILLIRNKIENYGGALLIISGLFLA--LVGVFP--------EGT--PPHVFVSILFFLL 112 (181)
T ss_pred eEEechHHHHHHHHHHHH----HHHHHHHhhhcchHHHHHHHHHHH--heeeCC--------CCC--CchHHHHHHHHHH
Confidence 444454444444433332 12222 566666667778888775 334433 222 2345667778888
Q ss_pred HHHHhhccChhHHHhcchhHHHH
Q 004016 124 FFTLSARIDKGIVKKSGKLAIVI 146 (779)
Q Consensus 124 lF~~Gle~d~~~l~~~~~~~~~i 146 (779)
+|.+.+-+.....+++.+....+
T Consensus 113 ~fi~~~i~si~~~~~~~~~~~~~ 135 (181)
T COG3371 113 SFIAMLIYSIGRLLRNRSGFGLI 135 (181)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999888877755544433
No 215
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=20.64 E-value=9.3e+02 Score=25.69 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=49.6
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHH-HHhh-hhHHHHHHHHHHcCccCChhHHHHH
Q 004016 136 VKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVAT-LEAT-ISFHVILANLTELKLLNSEIGRLAL 213 (779)
Q Consensus 136 l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~-Ts~~vv~~iL~el~l~~s~~g~l~l 213 (779)
+.+.....+.+++.+.++..+++...+|.+.....+... ....+++.. .+-. +..--...+++++|+.||..|-+..
T Consensus 71 f~~~~~NSliva~~~t~l~i~~~~laaYalar~~f~g~~-~~~~~~l~~lm~P~~v~~iPl~~~~~~lgl~nt~~glil~ 149 (281)
T COG0395 71 FLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRK-LLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILP 149 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 445666778888999999999998888888764222221 122222222 1111 1112234566789999997774443
Q ss_pred HHHHHHHHHHHHH
Q 004016 214 SSSLLSSLIGWFA 226 (779)
Q Consensus 214 s~a~i~D~~~~il 226 (779)
. ...+-.++..+
T Consensus 150 ~-~~~~~pf~ifl 161 (281)
T COG0395 150 Y-LAFGLPFAIFL 161 (281)
T ss_pred H-HHHHhHHHHHH
Confidence 3 33333444333
No 216
>PRK10711 hypothetical protein; Provisional
Probab=20.51 E-value=9.7e+02 Score=24.86 Aligned_cols=102 Identities=8% Similarity=0.071 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHHH-Hh
Q 004016 109 VMAINVIECVGLIFMFFTLSARIDKGIVKKSGKLAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVATL-EA 187 (779)
Q Consensus 109 ~~~l~~l~~lGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~-ls 187 (779)
.+.+..+ +|-.-.-|..-+--+.+.+||+++....--..|.++.++.+..++..++.. ..+..+.. -|
T Consensus 59 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~---------~~~~~Sl~pkS 127 (231)
T PRK10711 59 SEVLNDL--LQPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGAT---------PEIAASILPKS 127 (231)
T ss_pred cHHHHhh--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC---------HHHHHHHhhhh
Confidence 3444433 333334444555567788899888877666667777666666666666532 12222222 23
Q ss_pred hhhHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHH
Q 004016 188 TISFHVILANLTELKLLNSEIGRLALSSSLLSSLIGWFA 226 (779)
Q Consensus 188 ~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~il 226 (779)
+| .|+...+-+++|=. ..++....+++.+++.++
T Consensus 128 VT-tPIAm~is~~iGG~----~sLta~~ViitGi~Ga~~ 161 (231)
T PRK10711 128 VT-TPIAMAVGGSIGGI----PAISAVCVIFVGILGAVF 161 (231)
T ss_pred hh-HHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHH
Confidence 44 36776776776621 233333344444444433
No 217
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=20.22 E-value=8.7e+02 Score=24.19 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcC
Q 004016 365 VEMVILIAGTVKTFAIVIPCLYSK 388 (779)
Q Consensus 365 ~~~iiv~~~~~K~~~~~l~~~~~~ 388 (779)
..+.++...++=++|+++..+..|
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667888888877654
No 218
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=20.21 E-value=1.5e+02 Score=33.37 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=25.4
Q ss_pred ChHHHHHHHHhhhcCCcEEEEcccCCCCcccccccccccC
Q 004016 705 EGFETLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIE 744 (779)
Q Consensus 705 ~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e 744 (779)
|.+++++..++ ++.||+|||- +.||..|+.|+-+
T Consensus 51 ~~~~lv~fA~~--~~idl~vVGP----E~pL~~GvvD~l~ 84 (428)
T COG0151 51 DHEALVAFAKE--KNVDLVVVGP----EAPLVAGVVDALR 84 (428)
T ss_pred CHHHHHHHHHH--cCCCEEEECC----cHHHhhhhHHHHH
Confidence 45566665553 5789999985 5799999998843
Done!