Query 004016
Match_columns 779
No_of_seqs 285 out of 1965
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 7.1E-24 2.4E-28 230.1 12.2 302 111-448 59-384 (388)
2 3mt0_A Uncharacterized protein 99.5 5.6E-13 1.9E-17 141.4 20.4 251 471-772 8-277 (290)
3 3loq_A Universal stress protei 99.4 1.3E-12 4.6E-17 138.7 15.8 264 471-773 23-292 (294)
4 3cis_A Uncharacterized protein 99.4 1.3E-12 4.5E-17 139.9 14.0 273 470-772 19-307 (309)
5 3olq_A Universal stress protei 99.4 1.2E-12 4.2E-17 140.5 12.7 274 471-773 8-307 (319)
6 3ab8_A Putative uncharacterize 99.3 6.5E-12 2.2E-16 131.3 13.8 255 472-770 2-268 (268)
7 3fdx_A Putative filament prote 98.2 1.8E-06 6.2E-11 80.4 7.9 136 471-613 2-142 (143)
8 3s3t_A Nucleotide-binding prot 98.2 1.1E-06 3.6E-11 82.3 5.2 133 471-613 6-145 (146)
9 3s3t_A Nucleotide-binding prot 98.2 1.4E-05 4.7E-10 74.6 12.2 126 629-770 7-146 (146)
10 3dlo_A Universal stress protei 98.1 3.9E-06 1.3E-10 79.9 8.1 126 471-613 25-154 (155)
11 3hgm_A Universal stress protei 98.1 1.5E-06 5.2E-11 81.3 4.8 135 472-612 4-146 (147)
12 1mjh_A Protein (ATP-binding do 98.1 8.7E-06 3E-10 77.6 9.8 136 471-613 6-157 (162)
13 1tq8_A Hypothetical protein RV 98.1 8E-06 2.7E-10 78.4 9.6 133 470-613 17-156 (163)
14 3idf_A USP-like protein; unive 98.1 2.1E-05 7.3E-10 72.6 11.5 124 629-769 3-137 (138)
15 2dum_A Hypothetical protein PH 98.1 6.9E-06 2.4E-10 79.1 8.3 139 471-615 6-156 (170)
16 3tnj_A Universal stress protei 98.1 4.2E-06 1.4E-10 78.7 6.3 125 629-772 8-148 (150)
17 3fg9_A Protein of universal st 98.1 1.8E-06 6.2E-11 81.9 3.6 134 471-613 16-155 (156)
18 3fdx_A Putative filament prote 98.0 1.1E-05 3.9E-10 74.9 8.7 124 629-770 3-143 (143)
19 2dum_A Hypothetical protein PH 98.0 1.6E-05 5.6E-10 76.4 10.0 130 629-773 7-158 (170)
20 3dlo_A Universal stress protei 98.0 5.7E-06 1.9E-10 78.8 6.6 126 629-770 26-155 (155)
21 3hgm_A Universal stress protei 98.0 7E-06 2.4E-10 76.7 6.7 124 629-769 4-147 (147)
22 2z08_A Universal stress protei 98.0 6.9E-06 2.4E-10 76.0 6.4 129 472-613 4-136 (137)
23 2z08_A Universal stress protei 98.0 2.1E-05 7.2E-10 72.7 9.7 124 629-770 4-137 (137)
24 3tnj_A Universal stress protei 98.0 8.2E-06 2.8E-10 76.6 6.8 136 471-613 7-145 (150)
25 1jmv_A USPA, universal stress 98.0 1.8E-05 6.2E-10 73.4 9.1 131 472-615 4-138 (141)
26 1mjh_A Protein (ATP-binding do 97.9 3.1E-05 1E-09 73.7 9.8 128 629-772 7-160 (162)
27 2gm3_A Unknown protein; AT3G01 97.9 3.7E-05 1.3E-09 74.3 10.1 140 471-616 6-164 (175)
28 1jmv_A USPA, universal stress 97.9 2.4E-05 8.2E-10 72.5 8.0 123 629-772 4-139 (141)
29 3fg9_A Protein of universal st 97.9 2.4E-05 8.2E-10 74.0 8.0 125 629-770 17-156 (156)
30 3idf_A USP-like protein; unive 97.8 2.5E-05 8.6E-10 72.1 7.0 129 472-613 3-137 (138)
31 1tq8_A Hypothetical protein RV 97.8 3.9E-05 1.3E-09 73.5 8.1 128 627-773 18-160 (163)
32 3zux_A Transporter, ASBTNM; tr 97.7 0.039 1.4E-06 58.9 30.4 69 375-446 240-309 (332)
33 1q77_A Hypothetical protein AQ 97.6 0.00015 5E-09 66.9 8.3 95 629-729 6-119 (138)
34 1q77_A Hypothetical protein AQ 97.4 0.00027 9.4E-09 65.0 7.8 129 471-613 5-137 (138)
35 2gm3_A Unknown protein; AT3G01 97.4 0.00062 2.1E-08 65.5 10.7 129 629-773 7-165 (175)
36 3ab8_A Putative uncharacterize 97.4 0.00014 4.7E-09 75.3 5.4 129 629-773 2-151 (268)
37 3cis_A Uncharacterized protein 97.3 0.00016 5.4E-09 76.7 5.6 131 627-773 20-163 (309)
38 3mt0_A Uncharacterized protein 97.3 0.00033 1.1E-08 73.5 7.7 118 629-771 9-128 (290)
39 3olq_A Universal stress protei 97.2 0.00065 2.2E-08 72.0 8.7 133 629-775 9-154 (319)
40 3loq_A Universal stress protei 97.1 0.001 3.5E-08 69.8 9.3 116 470-613 170-288 (294)
41 3g40_A Na-K-CL cotransporter; 94.5 0.32 1.1E-05 50.1 12.6 220 469-731 19-256 (294)
42 1efp_B ETF, protein (electron 69.5 9.1 0.00031 38.8 7.3 92 637-742 36-141 (252)
43 1efv_B Electron transfer flavo 67.8 11 0.00036 38.3 7.4 93 637-743 39-145 (255)
44 1o97_C Electron transferring f 66.4 6.6 0.00022 40.1 5.6 93 637-742 36-140 (264)
45 3zux_A Transporter, ASBTNM; tr 61.8 1E+02 0.0034 32.3 14.0 73 338-410 46-121 (332)
46 1zun_A Sulfate adenylyltransfe 60.6 9.3 0.00032 40.3 5.6 56 629-691 48-103 (325)
47 2l0e_A Sodium/hydrogen exchang 56.1 2.8 9.7E-05 28.3 0.4 28 176-203 3-30 (33)
48 2wsi_A FAD synthetase; transfe 51.1 55 0.0019 33.9 9.6 92 629-731 55-169 (306)
49 1ni5_A Putative cell cycle pro 38.8 44 0.0015 36.5 6.7 92 629-729 15-118 (433)
50 2q5c_A NTRC family transcripti 38.2 2.7E+02 0.0091 26.5 12.0 139 557-727 6-149 (196)
51 1wy5_A TILS, hypothetical UPF0 35.4 48 0.0016 34.4 6.1 57 629-690 26-83 (317)
52 3a2k_A TRNA(Ile)-lysidine synt 34.8 39 0.0013 37.3 5.5 58 629-690 20-77 (464)
53 3fwk_A FMN adenylyltransferase 34.5 34 0.0012 35.5 4.7 91 629-730 60-171 (308)
54 2k3c_A TMIX peptide; membrane 32.6 1.9 6.3E-05 29.2 -3.5 27 295-321 5-31 (33)
55 2oq2_A Phosphoadenosine phosph 28.7 60 0.002 32.7 5.3 55 629-691 43-97 (261)
56 1sur_A PAPS reductase; assimil 27.7 72 0.0024 30.8 5.6 51 629-690 46-96 (215)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.90 E-value=7.1e-24 Score=230.12 Aligned_cols=302 Identities=11% Similarity=0.121 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHH----Hhcch--hHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhHHHHHH
Q 004016 111 AINVIECVGLIFMFFTLSARIDKGIV----KKSGK--LAIVIGVGAFIIPLIVSILTTLFIRDGLELDDELRSTLPMVAT 184 (779)
Q Consensus 111 ~l~~l~~lGl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~l~p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~ 184 (779)
....+.+-.+.++||.+|+|+|.+.+ ++.+| .+...++.|+++|++++. .+.. . ...+.....
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~-~------~~~~~~gw~ 127 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNY-A------DPITREGWA 127 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCC-S------STTHHHHTS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhc-C------ChhhhhhhH
Confidence 45567788899999999999999877 55544 478889999999998732 2221 1 133455556
Q ss_pred HHhhhhHHHHHHHHHHcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Q 004016 185 LEATISFHVILANLTELKL-LNSEIGRLALSSSLLSSLIGWFAPTFYIYASENALVGITRRTVFLMNVSVIVMVIIIVFV 263 (779)
Q Consensus 185 ~ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v 263 (779)
+.+.|+.+....++..++. .++..++.+++.|++||+.+|+++++. .. + +.+ ..+ +...+++++..
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvf-yt---~--~~~---~~~-l~~~~~~~~~~--- 194 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALF-YT---N--DLS---MAS-LGVAAVAIAVL--- 194 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHH-SC---C--CCC---HHH-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHH-Hc---C--Ccc---HHH-HHHHHHHHHHH---
Confidence 6777999999999999865 456677999999999999999999887 42 2 221 111 11111121111
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhcCCCC----CchhHHHHHHHHHHHHh
Q 004016 264 VRPIIFWMMRKTPEGKPLKQDHLVALNVIVLVVALVGELTGQNSYLGPFILGITTPVTP----PMGSLLADKIQYFVWVA 339 (779)
Q Consensus 264 ~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~se~lg~~~~lGaflaGL~l~~~~----p~~~~l~~kl~~~~~~l 339 (779)
.++.|+. +++...+.++ .+ ++.+.++..|+|+++|+|++|+++|..+ +..+++++++++++..+
T Consensus 195 -----~~l~r~~-----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ 262 (388)
T 1zcd_A 195 -----AVLNLCG-----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYL 262 (388)
T ss_dssp -----HHHHHTT-----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHhc-----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHH
Confidence 1222221 1223334433 22 4457779999999999999999999853 34788999999999999
Q ss_pred hHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHhhHHH----HHHHHHhc------CCChHHHHHHHHHhhhhhhhH
Q 004016 340 FIPCF-IINTGRRVDLYSIQFNHFLAVEMVILIAGTVKTFA----IVIPCLYS------KIPFMDALALGLLLNCRGIYD 408 (779)
Q Consensus 340 flPlF-F~~~G~~~d~~~l~~~~~~~~~~iiv~~~~~K~~~----~~l~~~~~------~~~~~~~l~lg~~l~~kG~~~ 408 (779)
++|+| |+..|+++|...+....-.....+++..+++|++| +++..|+. +++|+|...+|++++.+++++
T Consensus 263 ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftms 342 (388)
T 1zcd_A 263 ILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMS 342 (388)
T ss_dssp HHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHH
T ss_pred HHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHH
Confidence 99999 99999999975332110011123344557899988 44444444 899999999999999999999
Q ss_pred HHHHHhhhhcCC--CChhHHHHHHHHHHHHHHhHHHHHHHhh
Q 004016 409 IQVFTRAKQRLQ--ITDESFAIMVITAMFQSAIIIPLVKLVY 448 (779)
Q Consensus 409 l~~~~~~~~~~~--i~~~~f~~lv~~~ll~t~i~~plv~~l~ 448 (779)
+++++.+++.+. +.++.+..+++++++++.+++.++++.+
T Consensus 343 L~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 343 IFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998876 3567799999999998887777776544
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.51 E-value=5.6e-13 Score=141.44 Aligned_cols=251 Identities=16% Similarity=0.104 Sum_probs=169.4
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcC
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNK 550 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 550 (779)
-|||+|+...++....++.+..++.. ....++++|+++ + + ..++.++.+.+..+.
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~-~~a~l~ll~v~~-~------------~---------~~~~~l~~~~~~~~~-- 62 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV-TQSHLHLLVCEK-R------------R---------DHSAALNDLAQELRE-- 62 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH-HCCEEEEEEECS-S------------S---------CCHHHHHHHHHHHHH--
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHh-cCCeEEEEEeeC-c------------H---------HHHHHHHHHHHHHhh--
Confidence 47999999999999988888887765 334789999986 1 0 013333333332222
Q ss_pred cceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceEEEecCCCccccccccc
Q 004016 551 AYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIGLLYDRSLAIDYRSFQC 627 (779)
Q Consensus 551 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVgIlvdrg~~~~~~~~~~ 627 (779)
.++.++...... .+..+.|++.|+++++|+||+|.|+. .+..++++.+++++++||+|-+.-. +. +. .. .
T Consensus 63 ~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~-~~-~~--~~-~ 135 (290)
T 3mt0_A 63 EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKT-AR-PW--TG-G 135 (290)
T ss_dssp TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECC-CS-CS--TT-C
T ss_pred CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecC-CC-CC--CC-C
Confidence 346666655543 47899999999999999999999983 2456899999999999999777632 21 11 23 5
Q ss_pred ceEEEeecCCcc-------HHHHHHHHHHHhcCCCeEEEEEEEEecCCCCC-------CccchhhHHHHHHHhhhhcCCC
Q 004016 628 RRVCVLFIGGAD-------DREALALGARMGRNPSIHLTVTRFVVTNPTMS-------DFIDEDRDQAMINDFRFVNLDS 693 (779)
Q Consensus 628 ~~i~v~f~GG~d-------dreAL~~a~rma~~~~v~ltv~~~~~~~~~~~-------~~~e~~~d~~~i~~~~~~~~~~ 693 (779)
+|++++-|.++ .+.|+++|.++|+..+.+++++|+.+...... .+..++..++.++++.++....
T Consensus 136 -~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (290)
T 3mt0_A 136 -KILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFS 214 (290)
T ss_dssp -EEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -eEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999887 79999999999999999999999987532110 0111222345566666654321
Q ss_pred CCEEEEEEeecChHHHHHHHHhhh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEee
Q 004016 694 KNVEYVEEGVEEGFETLRIINAIA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQ 771 (779)
Q Consensus 694 ~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq 771 (779)
.+.+ .+..| +..+.|.+.+ .++||+++|+++.. |+.+| -+|-..+-+... ++++||||..
T Consensus 215 -~~~~---~v~~g-~~~~~I~~~a~~~~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~~---~~~pVLvv~~ 276 (290)
T 3mt0_A 215 -DEQL---HIEEG-PADVLIPRTAQKLDAVVTVIGTVART------GLSGA----LIGNTAEVVLDT---LESDVLVLKP 276 (290)
T ss_dssp -TTTE---EEEES-CHHHHHHHHHHHHTCSEEEEECCSSC------CGGGC----CSCHHHHHHHTT---CSSEEEEECC
T ss_pred -cceE---EEecc-CHHHHHHHHHHhcCCCEEEECCCCCc------CCcce----ecchHHHHHHhc---CCCCEEEECC
Confidence 1111 11122 2333443333 36999999988632 22222 389999999988 8899999976
Q ss_pred e
Q 004016 772 Q 772 (779)
Q Consensus 772 ~ 772 (779)
+
T Consensus 277 ~ 277 (290)
T 3mt0_A 277 D 277 (290)
T ss_dssp H
T ss_pred C
Confidence 5
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.42 E-value=1.3e-12 Score=138.68 Aligned_cols=264 Identities=14% Similarity=0.058 Sum_probs=170.5
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcC
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNK 550 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 550 (779)
-|||+|+...++....++.+..++.. ....++++|+++........ ..............+.++.++.+.+..+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKV-GVEEIGVLFVINLTKLSTVS--GGIDIDHYIDEMSEKAEEVLPEVAQKIEA-- 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHT-TCCEEEEECCEECTTC-------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEecCccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 38999999999988888888777654 45689999998865322100 00000000000112234455555544332
Q ss_pred cceEEEE-EEEeccCCChHHHHHHHHhhcCccEEEeccccCC---ChhhHHHHHHhhhcCCCceEEEecCCCcccccccc
Q 004016 551 AYVSVQC-FTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE---PTLTKKVINNVLSMSPCSIGLLYDRSLAIDYRSFQ 626 (779)
Q Consensus 551 ~~v~v~~-~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~---~~~~~~~n~~vl~~apCsVgIlvdrg~~~~~~~~~ 626 (779)
.+++++. ..... .+..+.| .|+++++|+||+|.|+.. +..++++.++|++++||+|-|.-+... .....
T Consensus 98 ~g~~~~~~~v~~~--g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~--~~~~~- 170 (294)
T 3loq_A 98 AGIKAEVIKPFPA--GDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDMV--VNSLF- 170 (294)
T ss_dssp TTCEEEECSSCCE--ECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCTT--TTCTT-
T ss_pred cCCCcceeEeecc--CChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCccc--cCccC-
Confidence 4567765 32202 4678888 999999999999998732 345688899999999999877633321 11223
Q ss_pred cceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeecCh
Q 004016 627 CRRVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEG 706 (779)
Q Consensus 627 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~ 706 (779)
. +|++++-|.+++++|+++|.++++..+.+++++|+.+... .++.+ +++.+.+... +.++.+ .+..+
T Consensus 171 ~-~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----~~~~l-~~~~~~l~~~---~~~~~~---~~~~g 237 (294)
T 3loq_A 171 D-RVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----KTADL-RVMEEVIGAE---GIEVHV---HIESG 237 (294)
T ss_dssp S-EEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----CHHHH-HHHHHHHHHT---TCCEEE---EEECS
T ss_pred C-EEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----HHHHH-HHHHHHHHHc---CCcEEE---EEecC
Confidence 5 9999999999999999999999999999999999986532 12222 2333333332 123333 22334
Q ss_pred HHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeeec
Q 004016 707 FETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQA 773 (779)
Q Consensus 707 ~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~~ 773 (779)
+..+.|.+.++ +.||+++|+++.. ++.+| -+|-..+-+... ++++||||.+..
T Consensus 238 -~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pvLvv~~~~ 292 (294)
T 3loq_A 238 -TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIRR---SPVPVFVCKRGD 292 (294)
T ss_dssp -CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHHH---CSSCEEEECSCT
T ss_pred -CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHhc---CCCCEEEECCCC
Confidence 44445544443 7999999998642 12222 378888888887 788999998764
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.40 E-value=1.3e-12 Score=139.87 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=169.9
Q ss_pred cceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCC-cc-ccccccCCCCCCCCCCcchhHHHHHHHHHH
Q 004016 470 ELRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSM-PV-VIPHRLDKNPSSSKPAKIDPLLHAFFRYQQ 547 (779)
Q Consensus 470 e~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~-~~-~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 547 (779)
--|||+|+...++....++.+..++.. ....++++|+++ +.... +. ....+..+ ......++.++.+.+..+
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAEL-RKIPLTLVHAVS-PEVATWLEVPLPPGVLR----WQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHH-HTCCEEEEEECC-CCCCCTTCCCCCHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHh-cCCcEEEEEEec-CcccccccCCCCchhhH----HHHHHHHHHHHHHHHHHH
Confidence 358999999988888888887777654 234689999987 22111 00 00000000 001122344444333222
Q ss_pred hc---CcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceEEEecCCCccc
Q 004016 548 TN---KAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIGLLYDRSLAID 621 (779)
Q Consensus 548 ~~---~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVgIlvdrg~~~~ 621 (779)
.. ..++.++..... .+..+.|++.|+ ++|+||||.|+. .+..++++.++|++++||+|-+.-.+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~~~ 167 (309)
T 3cis_A 93 QASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVMP 167 (309)
T ss_dssp HHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTTCCCSC
T ss_pred HhcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCCcccCC
Confidence 11 014666655443 478999999996 899999999872 2456899999999999999877643322110
Q ss_pred ccccccceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCC---CCccc--hhhHHHHHHHhhhhcC---CC
Q 004016 622 YRSFQCRRVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTM---SDFID--EDRDQAMINDFRFVNL---DS 693 (779)
Q Consensus 622 ~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~---~~~~e--~~~d~~~i~~~~~~~~---~~ 693 (779)
.... . +|++++-|.+.++.|+++|.++|+..+.+++++|+..+.... ..+.+ ++..++.++++..+.. ..
T Consensus 168 ~~~~-~-~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 245 (309)
T 3cis_A 168 HPQQ-A-PVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERYPN 245 (309)
T ss_dssp SSCC-C-CEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTT
T ss_pred CCCC-C-eEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 1123 5 899999999999999999999999999999999998653211 10111 1112233444333211 12
Q ss_pred CCEEEEEEeecChHHHHHHHHhhhcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeee
Q 004016 694 KNVEYVEEGVEEGFETLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQ 772 (779)
Q Consensus 694 ~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~ 772 (779)
.++++ . +..| +..+.|.+.+++.||+++|+++.. ++.+| -+|-..+-+... ++++||||..+
T Consensus 246 ~~~~~--~-~~~g-~~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~vl~~---~~~pVlvv~~~ 307 (309)
T 3cis_A 246 VAITR--V-VVRD-QPARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGETVAQL---ARTPVIVARES 307 (309)
T ss_dssp SCEEE--E-EESS-CHHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHHHHHH---CSSCEEEECC-
T ss_pred CcEEE--E-EEcC-CHHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHHHHhc---CCCCEEEeCCC
Confidence 23443 2 2344 445566666669999999998532 12222 378888888887 78899999754
No 5
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.39 E-value=1.2e-12 Score=140.47 Aligned_cols=274 Identities=11% Similarity=0.072 Sum_probs=171.9
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcC
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNK 550 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 550 (779)
-|||+|+...++....++.+..++.. ....++++|+++......+-................+.++.++.+..... .
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 84 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQR-NGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYL--E 84 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHH-HCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHH-cCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 47999999999998988888777765 33578999997632110000000000000000000112233333332222 2
Q ss_pred cceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceEEEecCCCccccccccc
Q 004016 551 AYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIGLLYDRSLAIDYRSFQC 627 (779)
Q Consensus 551 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVgIlvdrg~~~~~~~~~~ 627 (779)
.+++++...... .+..+.|++.|+++++|+||+|.|+. .+..++++.++|++++||+|.+.-.+.. . .. .
T Consensus 85 ~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~---~-~~-~ 157 (319)
T 3olq_A 85 AGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKEW---P-EY-G 157 (319)
T ss_dssp TTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSCC---C-TT-C
T ss_pred cCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCccc---c-cC-C
Confidence 457777665533 57899999999999999999999982 2455899999999999999887643321 1 23 5
Q ss_pred ceEEEeecCCcc-------HHHHHHHHHHHhcCC--CeEEEEEEEEecCCCC------CCc------cchhhHHHHHHHh
Q 004016 628 RRVCVLFIGGAD-------DREALALGARMGRNP--SIHLTVTRFVVTNPTM------SDF------IDEDRDQAMINDF 686 (779)
Q Consensus 628 ~~i~v~f~GG~d-------dreAL~~a~rma~~~--~v~ltv~~~~~~~~~~------~~~------~e~~~d~~~i~~~ 686 (779)
+|++++-|.++ .+.|+++|.++++.. +.+++++|+.+..... +.+ +.++.-++.++++
T Consensus 158 -~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (319)
T 3olq_A 158 -TIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKEL 236 (319)
T ss_dssp -EEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -eEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 89999999884 499999999999887 9999999998753221 000 0111124556666
Q ss_pred hhhcCCCCCEEEEEEeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCce
Q 004016 687 RFVNLDSKNVEYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRA 764 (779)
Q Consensus 687 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~ 764 (779)
.+++... .+.+. +..| +..+.|.+.++ +.||+++|+++.. |+.+| -+|-..+-+... +++
T Consensus 237 ~~~~~~~-~~~~~---v~~g-~~~~~I~~~a~~~~~dLiV~G~~g~~------~~~~~----~~Gsv~~~vl~~---~~~ 298 (319)
T 3olq_A 237 RQKFSIP-EEKTH---VKEG-LPEQVIPQVCEELNAGIVVLGILGRT------GLSAA----FLGNTAEQLIDH---IKC 298 (319)
T ss_dssp HHHTTCC-GGGEE---EEES-CHHHHHHHHHHHTTEEEEEEECCSCC------STHHH----HHHHHHHHHHTT---CCS
T ss_pred HHHhCCC-cccEE---EecC-CcHHHHHHHHHHhCCCEEEEeccCcc------CCccc----cccHHHHHHHhh---CCC
Confidence 6554322 22221 1122 22334444433 7899999997532 12222 388889999888 889
Q ss_pred eEEEEeeec
Q 004016 765 SVLVIQQQA 773 (779)
Q Consensus 765 SvLVvqq~~ 773 (779)
+||||..+.
T Consensus 299 pVLvv~~~~ 307 (319)
T 3olq_A 299 DLLAIKPDG 307 (319)
T ss_dssp EEEEECCTT
T ss_pred CEEEECCCC
Confidence 999998764
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.33 E-value=6.5e-12 Score=131.34 Aligned_cols=255 Identities=13% Similarity=0.073 Sum_probs=163.3
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccc-cCCCCC------C-CCCCcchhHHHHHH
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHR-LDKNPS------S-SKPAKIDPLLHAFF 543 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~-~~~~~~------~-~~~~~~~~i~~af~ 543 (779)
|||+|+...++....++.+..++.. ....++++|+++......+-..... ..+... . ......++.++.+.
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK-LSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH-HTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHH-hCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999988888888777654 3346899999875421100000000 000000 0 00012234455444
Q ss_pred HHHHhcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C-C--ChhhHHHHHHhhhcCCCceEEEecCCCc
Q 004016 544 RYQQTNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T-E--PTLTKKVINNVLSMSPCSIGLLYDRSLA 619 (779)
Q Consensus 544 ~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~-~--~~~~~~~n~~vl~~apCsVgIlvdrg~~ 619 (779)
...+. .+++++..... .+..+.|++. ++++|+||||.|+ + . +..+|++.++|++++||+|-+.-.+.
T Consensus 81 ~~~~~--~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~-- 151 (268)
T 3ab8_A 81 QSALA--AGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP-- 151 (268)
T ss_dssp HHHHH--TTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC--
T ss_pred HHHHh--CCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC--
Confidence 43332 34566665443 3779999998 8899999999987 3 3 34689999999999999987753221
Q ss_pred ccccccccceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEE
Q 004016 620 IDYRSFQCRRVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYV 699 (779)
Q Consensus 620 ~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~ 699 (779)
+ .. . +|++++-|.++++.|+++|.++++..+.+++++|+.++.. +.++.+ +++.+.+... +-++++
T Consensus 152 ~---~~-~-~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~----~~~~~l-~~~~~~l~~~---~~~~~~- 217 (268)
T 3ab8_A 152 V---EL-E-GALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA----RAEAWA-LEAEAYLRDH---GVEASA- 217 (268)
T ss_dssp C---CC-C-EEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH----HHHHHH-HHHHHHHHHT---TCCEEE-
T ss_pred C---CC-C-EEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH----HHHHHH-HHHHHHHHHc---CCceEE-
Confidence 1 23 5 8999999999999999999999999999999999975420 111111 2233333221 223433
Q ss_pred EEeecChHHHHHHHHhhhcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 700 EEGVEEGFETLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 700 e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
.+ .+| +..+.|.+.++++||+++|+ |+.+| -+|-..+-+... ++++||||.
T Consensus 218 -~~-~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~pvlvv~ 268 (268)
T 3ab8_A 218 -LV-LGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN---AQGPVLTAR 268 (268)
T ss_dssp -EE-ECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSSCEEEEC
T ss_pred -EE-eCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc---CCCCEEEeC
Confidence 22 234 45566666667679999998 22222 378888888887 788999983
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.24 E-value=1.8e-06 Score=80.39 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=87.4
Q ss_pred ceEEEeecCCCC--hHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHh
Q 004016 471 LRILVCIPENDH--VPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQT 548 (779)
Q Consensus 471 ~riLv~i~~~~~--v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 548 (779)
-|||+|+...++ ....++.+..++.. ....++++|+++............... ........++..+.++++.+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 77 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI-DDAEVHFLTVIPSLPYYASLGMAYTAE---LPGMDELREGSETQLKEIAKK 77 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH-HTCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh-cCCeEEEEEEecCCcccccccccccch---hhhHHHHHHHHHHHHHHHHHH
Confidence 379999998888 77777777666543 335789999988643221110000000 000112234566666666554
Q ss_pred cC-cceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC--CChhhHHHHHHhhhcCCCceEEE
Q 004016 549 NK-AYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT--EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 549 ~~-~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~--~~~~~~~~n~~vl~~apCsVgIl 613 (779)
.. .++.++...... +..+.|++.|+++++|+|+||.|++ .+..+|++.++|++++||+|-|.
T Consensus 78 ~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 78 FSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp SCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred cCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 22 234455555444 7899999999999999999999973 24568999999999999998764
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.20 E-value=1.1e-06 Score=82.33 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=89.4
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccc--cccccCCCCCCCCCCcchhHHHHHHHHHHh
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVV--IPHRLDKNPSSSKPAKIDPLLHAFFRYQQT 548 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~--~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 548 (779)
-|||+|+...++....++.+..++.. ....++++|+++......... ...+..+ ......++.++.+....+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~ 80 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR-HQANLTALYVVDDSAYHTPALDPVLSELLD----AEAAHAKDAMRQRQQFVAT 80 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH-HTCEEEEEEEEECCCCCCGGGHHHHHHHHH----HHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEecCccccccccccccHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 37999999888888888887777654 345789999998754332110 0000000 0112234455555543332
Q ss_pred cCcce-EEEEEEEeccCCChHHHHHH-HHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceEEE
Q 004016 549 NKAYV-SVQCFTAVAPYASMHDDICS-MAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 549 ~~~~v-~v~~~t~vs~~~~m~~dI~~-~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVgIl 613 (779)
.++ .++...... +..+.|++ .|++.++|+||||.|+. .+..++++.++|++++||+|-|.
T Consensus 81 --~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 81 --TSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp --SSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred --cCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEe
Confidence 345 566555544 67999999 99999999999999872 24568999999999999998764
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.16 E-value=1.4e-05 Score=74.59 Aligned_cols=126 Identities=12% Similarity=0.153 Sum_probs=82.6
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCC----------ccchhhHHHHHHHhhhhcCCCCCE-E
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSD----------FIDEDRDQAMINDFRFVNLDSKNV-E 697 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~----------~~e~~~d~~~i~~~~~~~~~~~~v-~ 697 (779)
+|++++-|.++.+.|+++|.++|++.+.+++++|+.+....... +..++..++.++++.+.... ..+ .
T Consensus 7 ~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g~~~ 85 (146)
T 3s3t_A 7 NILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVAT-TSAPN 85 (146)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCCC
T ss_pred eEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-cCCcc
Confidence 89999999999999999999999999999999999976432110 11122234556666554322 123 2
Q ss_pred EEEEeecChHHHHHHHHh-hh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 698 YVEEGVEEGFETLRIINA-IA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 698 y~e~~v~~~~e~~~~i~~-~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
+... +..|. ..+.|.+ .+ .++||+|+|+++.. ++.+| -+|...+-+... ++++||||.
T Consensus 86 ~~~~-~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pVlvV~ 146 (146)
T 3s3t_A 86 LKTE-ISYGI-PKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVDH---APCNVIVIR 146 (146)
T ss_dssp CEEE-EEEEC-HHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred eEEE-EecCC-hHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhcc---CCCCEEEeC
Confidence 2222 22332 3333433 33 58999999987532 11121 389998899888 789999984
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.15 E-value=3.9e-06 Score=79.88 Aligned_cols=126 Identities=15% Similarity=0.101 Sum_probs=87.7
Q ss_pred ceEEEeecC-CCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhc
Q 004016 471 LRILVCIPE-NDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTN 549 (779)
Q Consensus 471 ~riLv~i~~-~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 549 (779)
-|||+|+.. .++....++.+..++.. ....++++|+++..+... .+ .....++.++.+.+..+.
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~-~~a~l~llhV~~~~~~~~-----~~--------~~~~~~~~l~~~~~~~~~- 89 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARL-RGVPVYVVHSLPGGGRTK-----DE--------DIIEAKETLSWAVSIIRK- 89 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHH-HTCCEEEEEEECCSTTSC-----HH--------HHHHHHHHHHHHHHHHHH-
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEEcCCCccc-----HH--------HHHHHHHHHHHHHHHHHh-
Confidence 489999998 88888888888777654 234689999987543211 00 012234555555544333
Q ss_pred CcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEEE
Q 004016 550 KAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 550 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgIl 613 (779)
.++.++..+.+. ..+..+.|++.|++.++|+||||.|+ + .+..++++.++|++++||+|-|.
T Consensus 90 -~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 -EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp -TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred -cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEe
Confidence 234455444442 24789999999999999999999987 2 24568999999999999998764
No 11
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.13 E-value=1.5e-06 Score=81.29 Aligned_cols=135 Identities=11% Similarity=0.072 Sum_probs=86.8
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCcc--ccccccCCCCCCCCCCcchhHHHHHHHHHHhc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPV--VIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTN 549 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~--~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 549 (779)
|||+|+...++....++.+..++.. ....++++|+++........ .......+..........++.++.+.+..+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQL-TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE- 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHH-HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 7999999888888888887776654 34578999998754200000 0000000000000112344555555554432
Q ss_pred CcceEE---EEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEE
Q 004016 550 KAYVSV---QCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGL 612 (779)
Q Consensus 550 ~~~v~v---~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgI 612 (779)
.++++ +..... .+..+.|++.|++.++|+|+||.|+ + .+..++++.++|++++||+|-|
T Consensus 82 -~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 82 -LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp -TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEE
T ss_pred -cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEE
Confidence 23444 544443 3789999999999999999999987 2 2456899999999999999865
No 12
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.11 E-value=8.7e-06 Score=77.60 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=88.0
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccC----CCCccc-----c-ccc---cCCCCCCCCCCcchh
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIG----RSMPVV-----I-PHR---LDKNPSSSKPAKIDP 537 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~----r~~~~~-----~-~~~---~~~~~~~~~~~~~~~ 537 (779)
-|||+|+...++....++.+..++.. ....++++|+++... .....- . +.. ..+. ........++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTL-KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENEL-KNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCS-SCCEEEEEEEEEGGGTC-----------------CHHHHHHH-HHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh-cCCeEEEEEEecCccccccccccccccccccccchhhhHHHH-HHHHHHHHHH
Confidence 37999999888888899998888765 456899999987531 000000 0 000 0000 0000012233
Q ss_pred HHHHHHHHHHhcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEEE
Q 004016 538 LLHAFFRYQQTNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 538 i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgIl 613 (779)
.++.+....+. .++.++...... +..+.|++.|+++++|+||||.|+ + .+..+|++.++|++++||+|-|.
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv 157 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVV 157 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHH--cCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEE
Confidence 44444332222 346666654443 789999999999999999999997 2 24578999999999999998876
No 13
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.11 E-value=8e-06 Score=78.41 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=85.8
Q ss_pred cceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEE--EeeeccCCCCcccc-ccccCCCCCCCCCCcchhHHHHHHHHH
Q 004016 470 ELRILVCIPENDHVPTAINLLKASNPPQSHVGVYVM--NLEEYIGRSMPVVI-PHRLDKNPSSSKPAKIDPLLHAFFRYQ 546 (779)
Q Consensus 470 e~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~l--hlvel~~r~~~~~~-~~~~~~~~~~~~~~~~~~i~~af~~~~ 546 (779)
--|||+|+...++....++.+..++. ....++++ |+++......+... ..+.. .......++.++.+.+..
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~--~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 90 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG--ADAKLIIASAYLPQHEDARAADILKDESYK----VTGTAPIYEILHDAKERA 90 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT--TTSEEEEEEECCC------------------------CCTHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC--CCCEEEEEEeeeccCcccccccccccHHHH----HHHHHHHHHHHHHHHHHH
Confidence 35899999988888888888766664 34578999 88765432011000 00000 012234566666655543
Q ss_pred HhcCcceE-EEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCC---ChhhHHHHHHhhhcCCCceEEE
Q 004016 547 QTNKAYVS-VQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE---PTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 547 ~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~---~~~~~~~n~~vl~~apCsVgIl 613 (779)
+. .++. ++..... .+..+.|++.|++.++|+||||.|+.. +..++++.++|++++||+|-|.
T Consensus 91 ~~--~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 91 HN--AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp HT--TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred HH--cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEE
Confidence 32 3455 6655443 478999999999999999999998732 3467889999999999998876
No 14
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.08 E-value=2.1e-05 Score=72.60 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=81.5
Q ss_pred eEEEeecCCccHHHHHHHHHHHh-cCCCeEEEEEEEEecCCCCC-------C--ccch-hhHHHHHHHhhhhcCCCCCEE
Q 004016 629 RVCVLFIGGADDREALALGARMG-RNPSIHLTVTRFVVTNPTMS-------D--FIDE-DRDQAMINDFRFVNLDSKNVE 697 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltv~~~~~~~~~~~-------~--~~e~-~~d~~~i~~~~~~~~~~~~v~ 697 (779)
+|++++-|.++.+.|+++|.++| ++.+.+++++|+.+...... + +..+ +..++.++++.+.... ..+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g~~ 81 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE-KGIN 81 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCC
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
Confidence 89999999999999999999999 99999999999997643210 0 0011 2234555555554322 2233
Q ss_pred EEEEeecChHHHHHHHHhhhcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEE
Q 004016 698 YVEEGVEEGFETLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVI 769 (779)
Q Consensus 698 y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVv 769 (779)
+... +..| +..+.|.+.++++||+++|+++.. .|.+.- |...+-+... ++++||||
T Consensus 82 ~~~~-v~~g-~~~~~I~~~a~~~dliV~G~~~~~---------~~~~~~--Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 82 PFVV-IKEG-EPVEMVLEEAKDYNLLIIGSSENS---------FLNKIF--ASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp CEEE-EEES-CHHHHHHHHHTTCSEEEEECCTTS---------TTSSCC--CCTTCHHHHH---CSSCEEEE
T ss_pred eEEE-EecC-ChHHHHHHHHhcCCEEEEeCCCcc---------hHHHHh--CcHHHHHHhc---CCCCEEEe
Confidence 3222 2234 344455555559999999997532 222222 7777888887 78899998
No 15
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.08 E-value=6.9e-06 Score=79.05 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=87.2
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCcc-cccc-----ccCC-CCCCCCCCcchhHHHHHH
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPV-VIPH-----RLDK-NPSSSKPAKIDPLLHAFF 543 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~-~~~~-----~~~~-~~~~~~~~~~~~i~~af~ 543 (779)
-|||+|+...++....++.+..++.. ....++++|+++........ -... .... ..........++.++.+.
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKM-EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCS-CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHh-cCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 37999999888888889998888865 45689999998753211000 0000 0000 000000011233444443
Q ss_pred HHHHhcCcceEEEE--EEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceEEEec
Q 004016 544 RYQQTNKAYVSVQC--FTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIGLLYD 615 (779)
Q Consensus 544 ~~~~~~~~~v~v~~--~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVgIlvd 615 (779)
...+. .++.++. .... .+..+.|++.|+++++|+||||.|+. .+..++++.++|++++||+|-|.-.
T Consensus 85 ~~~~~--~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~ 156 (170)
T 2dum_A 85 EEVKR--AFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKE 156 (170)
T ss_dssp HHHHH--HTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECC
T ss_pred HHHHH--cCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEcc
Confidence 33222 2344444 3333 37899999999999999999999972 2457899999999999999888743
No 16
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.06 E-value=4.2e-06 Score=78.68 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=79.6
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCC-----------CCC---ccchhhHHHHHHHhhhhcCCCC
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPT-----------MSD---FIDEDRDQAMINDFRFVNLDSK 694 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~-----------~~~---~~e~~~d~~~i~~~~~~~~~~~ 694 (779)
+|++++-|.++.+.|+++|.++|++.+.+++++|+.+.... ..+ +..++..++.++++.++....
T Consensus 8 ~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 86 (150)
T 3tnj_A 8 HILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGID- 86 (150)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 89999999999999999999999999999999999865211 001 111223345566666554222
Q ss_pred CEEEEEEeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeee
Q 004016 695 NVEYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQ 772 (779)
Q Consensus 695 ~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~ 772 (779)
.+.. .+..| +..+.|.+.++ ++||+|+|+++.. .|. --+|-..+-+... ++++||||...
T Consensus 87 ~~~~---~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~---------~~~--~~~Gs~~~~vl~~---~~~pVlvv~~~ 148 (150)
T 3tnj_A 87 PAHR---WLVWG-EPREEIIRIAEQENVDLIVVGSHGRH---------GLA--LLLGSTANSVLHY---AKCDVLAVRLR 148 (150)
T ss_dssp GGGE---EEEES-CHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEECC
T ss_pred cceE---EEecC-CHHHHHHHHHHHcCCCEEEEecCCCC---------CcC--eEecchHHHHHHh---CCCCEEEEeCC
Confidence 1222 22223 23334444444 8999999987632 122 3489888898888 78999999764
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.05 E-value=1.8e-06 Score=81.93 Aligned_cols=134 Identities=11% Similarity=0.091 Sum_probs=87.1
Q ss_pred ceEEEeec--CCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHh
Q 004016 471 LRILVCIP--ENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQT 548 (779)
Q Consensus 471 ~riLv~i~--~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 548 (779)
-|||+|+. ..++....++.+..++.. ....++++|+++............+..+ ......++.++.+.+..+.
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~ 90 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHD-YDVPLGICSVLESEDINIFDSLTPSKIQ----AKRKHVEDVVAEYVQLAEQ 90 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHH-HTCCEEEEEEECCCCTTCCCSSHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEEeCCCccccccCCHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 48999999 888888888887777654 3346899999886532110000000000 0112234455554443332
Q ss_pred cCcce-EEEEEEEeccCCChHHHHHHH-HhhcCccEEEecccc-CC-ChhhHHHHHHhhhcCCCceEEE
Q 004016 549 NKAYV-SVQCFTAVAPYASMHDDICSM-AFQKATSLIIFPFLK-TE-PTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 549 ~~~~v-~v~~~t~vs~~~~m~~dI~~~-A~e~~~~lIilp~h~-~~-~~~~~~~n~~vl~~apCsVgIl 613 (779)
.++ .++.....+ .+..+.|++. |++.++|+|++|.|+ +. +..+|++.++|++++||+|-|.
T Consensus 91 --~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 91 --RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp --HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEE
T ss_pred --cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEe
Confidence 234 355555552 3789999999 999999999999997 21 3478999999999999998764
No 18
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.04 E-value=1.1e-05 Score=74.90 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=78.6
Q ss_pred eEEEeecCCcc--HHHHHHHHHHHhcCCCeEEEEEEEEecCCCC---------CCccchhhHHHH---HHHhhhhcCC-C
Q 004016 629 RVCVLFIGGAD--DREALALGARMGRNPSIHLTVTRFVVTNPTM---------SDFIDEDRDQAM---INDFRFVNLD-S 693 (779)
Q Consensus 629 ~i~v~f~GG~d--dreAL~~a~rma~~~~v~ltv~~~~~~~~~~---------~~~~e~~~d~~~---i~~~~~~~~~-~ 693 (779)
+|++++-|.++ .+.|+++|.++|++.+.+++++|+.+..... +.+..++..++. ++++.++... .
T Consensus 3 ~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (143)
T 3fdx_A 3 AILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPE 82 (143)
T ss_dssp EEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCG
T ss_pred EEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 89999999999 9999999999999999999999998753210 001111222233 3334333221 1
Q ss_pred CCEEEEEEeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 694 KNVEYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 694 ~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
.++.+. +..| +..+.|.+.++ ++||+++|++ + +. +.+ --+|-..+-+... ++++||||.
T Consensus 83 ~~v~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~-~--~~----~~~----~~~Gs~~~~v~~~---~~~pVlvv~ 143 (143)
T 3fdx_A 83 DRMHFH---VAEG-SPKDKILALAKSLPADLVIIASH-R--PD----ITT----YLLGSNAAAVVRH---AECSVLVVR 143 (143)
T ss_dssp GGEEEE---EEES-CHHHHHHHHHHHTTCSEEEEESS-C--TT----CCS----CSSCHHHHHHHHH---CSSEEEEEC
T ss_pred CceEEE---EEec-ChHHHHHHHHHHhCCCEEEEeCC-C--CC----Cee----eeeccHHHHHHHh---CCCCEEEeC
Confidence 233332 2233 33444444444 8999999998 3 21 112 2489999999988 889999983
No 19
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.03 E-value=1.6e-05 Score=76.39 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=83.7
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCC----------------CCCcc---chhhHHHHHHHhhhh
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPT----------------MSDFI---DEDRDQAMINDFRFV 689 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~----------------~~~~~---e~~~d~~~i~~~~~~ 689 (779)
+|++++-|.++.+.|+++|.++|++.+.+++++|+++.... +.++. .++..++.++++.+.
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (170)
T 2dum_A 7 KVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEE 86 (170)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999875311 00011 112234556665543
Q ss_pred cC-CCCCEEEEEEeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeE
Q 004016 690 NL-DSKNVEYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASV 766 (779)
Q Consensus 690 ~~-~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~Sv 766 (779)
.. ...+++. +..+..| +..+.|.+.++ ++||+|+|+++.. ++.+ --+|-..+-+... ++++|
T Consensus 87 ~~~~g~~~~~-~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~------~~~~----~~~Gsv~~~vl~~---~~~PV 151 (170)
T 2dum_A 87 VKRAFRAKNV-RTIIRFG-IPWDEIVKVAEEENVSLIILPSRGKL------SLSH----EFLGSTVMRVLRK---TKKPV 151 (170)
T ss_dssp HHHHTTCSEE-EEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCC------C--T----TCCCHHHHHHHHH---CSSCE
T ss_pred HHHcCCceee-eeEEecC-ChHHHHHHHHHHcCCCEEEECCCCCC------cccc----ceechHHHHHHHh---CCCCE
Confidence 21 1223443 1122233 23344444444 8999999988532 1111 1389999999888 78999
Q ss_pred EEEeeec
Q 004016 767 LVIQQQA 773 (779)
Q Consensus 767 LVvqq~~ 773 (779)
|||....
T Consensus 152 lvv~~~~ 158 (170)
T 2dum_A 152 LIIKEVD 158 (170)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998654
No 20
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.03 E-value=5.7e-06 Score=78.76 Aligned_cols=126 Identities=14% Similarity=0.028 Sum_probs=83.2
Q ss_pred eEEEeecC-CccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcC-CCCCEEEEEEeecCh
Q 004016 629 RVCVLFIG-GADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNL-DSKNVEYVEEGVEEG 706 (779)
Q Consensus 629 ~i~v~f~G-G~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~-~~~~v~y~e~~v~~~ 706 (779)
+|++++-| .+..+.|+++|.++|+..+.+++++|+.+...... +..++..++.++++.+... ...++... ..+..|
T Consensus 26 ~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~~-~~v~~G 103 (155)
T 3dlo_A 26 PIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEEH-LLVRGK 103 (155)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEEE-EEESSS
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceEE-EEecCC
Confidence 89999999 99999999999999999999999999997543221 1222333455555554321 12234332 223333
Q ss_pred HHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 707 FETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 707 ~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
. ..+.|.+.++ +.||+|+|+++.. ++.+ --+|...+-+... ++++||||+
T Consensus 104 ~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~----~~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 104 E-PPDDIVDFADEVDAIAIVIGIRKRS------PTGK----LIFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp C-HHHHHHHHHHHTTCSEEEEECCEEC------TTSC----EECCHHHHHHHHH---CSSCEEEEC
T ss_pred C-HHHHHHHHHHHcCCCEEEECCCCCC------CCCC----EEeccHHHHHHHh---CCCCEEEeC
Confidence 2 3334444444 8999999987531 1111 1389999999988 889999984
No 21
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.00 E-value=7e-06 Score=76.66 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=80.5
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCC-----------CC---CCccchhhHHHHHHHhhhhcC-CC
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNP-----------TM---SDFIDEDRDQAMINDFRFVNL-DS 693 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~-----------~~---~~~~e~~~d~~~i~~~~~~~~-~~ 693 (779)
+|++++-|.++.+.|+++|.++|++.+.+++++|+.+... .. ..+..++..++.++++.+... .+
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 83 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELG 83 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999986421 00 011122333455666554421 11
Q ss_pred CCE---EEEEEeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEE
Q 004016 694 KNV---EYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLV 768 (779)
Q Consensus 694 ~~v---~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLV 768 (779)
-++ +. .+..| +..+.|.+.++ ++||+|+|+++.. . +.+ --+|...+-+... ++++|||
T Consensus 84 ~~~~~~~~---~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~--~----~~~----~~~Gs~~~~vl~~---~~~pVlv 146 (147)
T 3hgm_A 84 VPADKVRA---FVKGG-RPSRTIVRFARKRECDLVVIGAQGTN--G----DKS----LLLGSVAQRVAGS---AHCPVLV 146 (147)
T ss_dssp CCGGGEEE---EEEES-CHHHHHHHHHHHTTCSEEEECSSCTT--C----CSC----CCCCHHHHHHHHH---CSSCEEE
T ss_pred CCccceEE---EEecC-CHHHHHHHHHHHhCCCEEEEeCCCCc--c----ccc----eeeccHHHHHHhh---CCCCEEE
Confidence 122 32 22223 23334444444 8999999987632 1 111 2378888888888 7889998
Q ss_pred E
Q 004016 769 I 769 (779)
Q Consensus 769 v 769 (779)
|
T Consensus 147 V 147 (147)
T 3hgm_A 147 V 147 (147)
T ss_dssp C
T ss_pred C
Confidence 6
No 22
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.00 E-value=6.9e-06 Score=75.98 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=80.9
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcCc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNKA 551 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 551 (779)
|||+|+...++....++.+..++.. ....++++|+++.......-..+.+. .....++.-+.++.+.+. .
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~--~ 73 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEA-HGARLIVVHAYEPVPDYLGEPFFEEA-------LRRRLERAEGVLEEARAL--T 73 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHH-HTCEEEEEEEECC---------------------CHHHHHHHHHHHHHHHH--H
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEecCCCccccccchHHH-------HHHHHHHHHHHHHHHHHH--c
Confidence 7999999888888888887776654 34578999998732110000000000 001112222334444332 1
Q ss_pred ce-EEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEEE
Q 004016 552 YV-SVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 552 ~v-~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgIl 613 (779)
++ .++..... .+..+.|++.|+++++|+|+||.|+ + .+..+|++.++|++++||+|-|.
T Consensus 74 g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 74 GVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred CCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEe
Confidence 23 33333332 4789999999999999999999997 2 24568999999999999998764
No 23
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.99 E-value=2.1e-05 Score=72.66 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=80.5
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCC--C---CC---ccchhhHHHHHHHhhhhcCCCCCEEEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPT--M---SD---FIDEDRDQAMINDFRFVNLDSKNVEYVE 700 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~--~---~~---~~e~~~d~~~i~~~~~~~~~~~~v~y~e 700 (779)
+|++++-|.++++.|+++|.++|+..+.+++++|+.++... . .+ +..++..++.++++.++... .++++.
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~~- 81 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGV-PKEDAL- 81 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCC-CGGGEE-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCC-CccEEE-
Confidence 89999999999999999999999999999999999864210 0 01 11122334566666654211 033332
Q ss_pred EeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 701 EGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 701 ~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
+..| +..+.|.+.++ ++||+++|+++.. ++.+ --+|-..+-+... ++++||||.
T Consensus 82 --~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 82 --LLEG-VPAEAILQAARAEKADLIVMGTRGLG------ALGS----LFLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp --EEES-SHHHHHHHHHHHTTCSEEEEESSCTT------CCSC----SSSCHHHHHHHHH---CSSCEEEEC
T ss_pred --EEec-CHHHHHHHHHHHcCCCEEEECCCCCc------hhhh----hhhccHHHHHHhc---CCCCEEEeC
Confidence 1223 23334444444 8999999988632 1111 1389999999988 789999983
No 24
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.99 E-value=8.2e-06 Score=76.63 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=80.6
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcC
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNK 550 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 550 (779)
-|||+|+...++....++.+..++.. ....++++|+++......+.......... ........++..+.++.+.+..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~- 83 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ-IGARLSLIHVLDNIPMPDTPYGTAIPLDT-ETTYDAMLDVEKQKLSQIGNTL- 83 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH-HTCEEEEEEEEC--------CTTCCCSSS-CCCHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEEcCccccccccccccCcCH-HHHHHHHHHHHHHHHHHHHHHc-
Confidence 37999999999998888888777754 34578999998754221000000000000 0000011123334444444332
Q ss_pred cceE-EEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCC--ChhhHHHHHHhhhcCCCceEEE
Q 004016 551 AYVS-VQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE--PTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 551 ~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~--~~~~~~~n~~vl~~apCsVgIl 613 (779)
++. ++..... .+..+.|++.|+++++|+|+||.|+.. ...++++.++|++++||+|-|.
T Consensus 84 -~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 84 -GIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp -TCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEE
T ss_pred -CCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEE
Confidence 222 2222222 478999999999999999999998721 2567889999999999998776
No 25
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.99 E-value=1.8e-05 Score=73.38 Aligned_cols=131 Identities=6% Similarity=0.026 Sum_probs=82.2
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeec-cCCCCcccc--ccccCCCCCCCCCCcchhHHHHHHHHHHh
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEY-IGRSMPVVI--PHRLDKNPSSSKPAKIDPLLHAFFRYQQT 548 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel-~~r~~~~~~--~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 548 (779)
|||+|+...++....++.+..++.. ....++++|+++. +........ ..+..+ ...++..+.++++.+.
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~ 75 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKR-HDAKLSIIHVDVNFSDLYTGLIDVNMSSMQD-------RISTETQKALLDLAES 75 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHH-HTCEEEEEEEEECCGGGCCCCEEHHHHHHTT-------CCCCHHHHHHHHHHHH
T ss_pred eEEEEecCchhhHHHHHHHHHHHHh-cCCEEEEEEEecCchhhhccccccchHHHHH-------HHHHHHHHHHHHHHHH
Confidence 7999999988888888888777654 3457899999843 211111000 000000 1112233344444333
Q ss_pred cCcceEE-EEEEEeccCCChHHHHHHHHhhcCccEEEeccccCCChhhHHHHHHhhhcCCCceEEEec
Q 004016 549 NKAYVSV-QCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTEPTLTKKVINNVLSMSPCSIGLLYD 615 (779)
Q Consensus 549 ~~~~v~v-~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~~~~~n~~vl~~apCsVgIlvd 615 (779)
. ++.+ +..... .+..+.|++.|++.++|+|+||.|++.-..++++.++|++++||+|-|.-.
T Consensus 76 ~--~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 76 V--DYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp S--SSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred c--CCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCCCchhhhhcchHHHHHhcCCCCEEEeeC
Confidence 2 2333 222222 367999999999999999999998322223689999999999999888643
No 26
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.93 E-value=3.1e-05 Score=73.73 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=82.5
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecC-----C--CC--------CCc------cc---hhhHHHHHH
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTN-----P--TM--------SDF------ID---EDRDQAMIN 684 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~-----~--~~--------~~~------~e---~~~d~~~i~ 684 (779)
+|++++-|.++.+.|+++|.++|+..+.+++++|++++. . .. .++ .+ ++..++.++
T Consensus 7 ~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (162)
T 1mjh_A 7 KILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKME 86 (162)
T ss_dssp EEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998753 1 10 100 00 112234555
Q ss_pred HhhhhcCCCCCEEEEEEeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCC
Q 004016 685 DFRFVNLDSKNVEYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKS 762 (779)
Q Consensus 685 ~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~ 762 (779)
++.++.. ...+.+...+ ..| +..+.|.+.++ ++||+|+|+++.. ++.+| -+|-+.+-+... +
T Consensus 87 ~~~~~~~-~~g~~~~~~v-~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~---~ 150 (162)
T 1mjh_A 87 NIKKELE-DVGFKVKDII-VVG-IPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK---S 150 (162)
T ss_dssp HHHHHHH-HTTCEEEEEE-EEE-CHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH---C
T ss_pred HHHHHHH-HcCCceEEEE-cCC-CHHHHHHHHHHHcCCCEEEEcCCCCC------Cccce----EecchHHHHHHh---C
Confidence 5554421 1223332222 233 33344444433 8999999988532 12222 389999999988 7
Q ss_pred ceeEEEEeee
Q 004016 763 RASVLVIQQQ 772 (779)
Q Consensus 763 ~~SvLVvqq~ 772 (779)
+++||||...
T Consensus 151 ~~pVlvv~~~ 160 (162)
T 1mjh_A 151 NKPVLVVKRK 160 (162)
T ss_dssp CSCEEEECCC
T ss_pred CCCEEEEeCC
Confidence 8999999753
No 27
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.91 E-value=3.7e-05 Score=74.25 Aligned_cols=140 Identities=11% Similarity=0.143 Sum_probs=82.2
Q ss_pred ceEEEeecCCC---------ChHHHHHHHHhcCCC--CCCceEEEEEeeeccCCCCc----ccc-ccccCCCCCCCCCCc
Q 004016 471 LRILVCIPEND---------HVPTAINLLKASNPP--QSHVGVYVMNLEEYIGRSMP----VVI-PHRLDKNPSSSKPAK 534 (779)
Q Consensus 471 ~riLv~i~~~~---------~v~~li~L~~~~~~~--~~p~~v~~lhlvel~~r~~~----~~~-~~~~~~~~~~~~~~~ 534 (779)
-|||+|+...+ .....++.+..+... .....++++|+++....... ... ....++- .......
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDM-RQSNKAK 84 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHH-TTSHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHH-HHHHHHH
Confidence 47999999887 777788887765422 14568999999864321100 000 0000000 0000011
Q ss_pred chhHHHHHHHHHHhcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceE
Q 004016 535 IDPLLHAFFRYQQTNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIG 611 (779)
Q Consensus 535 ~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVg 611 (779)
.++.++.+....+. .++.++..... .+..+.|++.|+++++|+||||.|+. .+..+|++.++|++++||+|-
T Consensus 85 ~~~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVl 159 (175)
T 2gm3_A 85 GLHLLEFFVNKCHE--IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVM 159 (175)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHH--CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEE
Confidence 23444444432221 34666655443 37899999999999999999999872 245689999999999999988
Q ss_pred EEecC
Q 004016 612 LLYDR 616 (779)
Q Consensus 612 Ilvdr 616 (779)
|+-.+
T Consensus 160 vv~~~ 164 (175)
T 2gm3_A 160 TIKRN 164 (175)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 87443
No 28
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.89 E-value=2.4e-05 Score=72.54 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=78.7
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEec-CC-CCC---------CccchhhHHHHHHHhhhhcCCCCCEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVT-NP-TMS---------DFIDEDRDQAMINDFRFVNLDSKNVE 697 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~-~~-~~~---------~~~e~~~d~~~i~~~~~~~~~~~~v~ 697 (779)
+|++++-|.++++.|+++|.++|+..+.+++++|+.++ .. ... .+..++.-++.++++.++.... +
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~- 80 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYP--I- 80 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSC--C-
T ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCC--c-
Confidence 89999999999999999999999999999999999843 11 000 0111122245566666553221 1
Q ss_pred EEEEeecChHHHHHHHHhhh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeee
Q 004016 698 YVEEGVEEGFETLRIINAIA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQ 772 (779)
Q Consensus 698 y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~ 772 (779)
.+..+..|. ..+.|.+.+ .++||+|+|++ .. . |. .+|-..+-+... ++++||||...
T Consensus 81 -~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~-~~--~-------~~---~lgs~~~~vl~~---~~~pVlvv~~~ 139 (141)
T 1jmv_A 81 -SEKLSGSGD-LGQVLSDAIEQYDVDLLVTGHH-QD--F-------WS---KLMSSTRQVMNT---IKIDMLVVPLR 139 (141)
T ss_dssp -CCEEEEEEC-HHHHHHHHHHHTTCCEEEEEEC-CC--C-------HH---HHHHHHHHHHTT---CCSEEEEEECC
T ss_pred -eEEEEecCC-HHHHHHHHHHhcCCCEEEEeCC-Cc--h-------hh---hhcchHHHHHhc---CCCCEEEeeCC
Confidence 111222232 222333332 47999999987 32 1 11 268888888887 78999999754
No 29
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.88 E-value=2.4e-05 Score=74.04 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=81.3
Q ss_pred eEEEeec--CCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCC-C-------ccchhhHHHHHHHhhhhcCC-C-CCE
Q 004016 629 RVCVLFI--GGADDREALALGARMGRNPSIHLTVTRFVVTNPTMS-D-------FIDEDRDQAMINDFRFVNLD-S-KNV 696 (779)
Q Consensus 629 ~i~v~f~--GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~-~-------~~e~~~d~~~i~~~~~~~~~-~-~~v 696 (779)
+|++++- |.++.+.|+++|.++|++.+.+++++|+++...... . +..++..++.++++.+.... + .++
T Consensus 17 ~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~ 96 (156)
T 3fg9_A 17 RILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQV 96 (156)
T ss_dssp -EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 8999999 999999999999999999999999999997532110 0 11122234555655443211 1 123
Q ss_pred EEEEEeecChHHHHHHHHhh---hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEe
Q 004016 697 EYVEEGVEEGFETLRIINAI---ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQ 770 (779)
Q Consensus 697 ~y~e~~v~~~~e~~~~i~~~---~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvq 770 (779)
.+ .+..+|. ..+.|.+. ..++||+++|+++.. .+. . -+|...+-+... ++++||||.
T Consensus 97 ~~--~v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~~---a~~PVlvV~ 156 (156)
T 3fg9_A 97 EP--LVYEGGD-VDDVILEQVIPEFKPDLLVTGADTEF---------PHS-K-IAGAIGPRLARK---APISVIVVR 156 (156)
T ss_dssp EE--EEEECSC-HHHHHHHTHHHHHCCSEEEEETTCCC---------TTS-S-SCSCHHHHHHHH---CSSEEEEEC
T ss_pred EE--EEEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCC---------ccc-e-eecchHHHHHHh---CCCCEEEeC
Confidence 33 2222132 33344443 358999999998642 222 2 489999999988 889999984
No 30
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.83 E-value=2.5e-05 Score=72.09 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=86.8
Q ss_pred eEEEeecCCCChHHHHHHHHhcC-CCCCCceEEEEEeeeccCCCCccc-cccccCCCCCCCCC-CcchhHHHHHHHHHHh
Q 004016 472 RILVCIPENDHVPTAINLLKASN-PPQSHVGVYVMNLEEYIGRSMPVV-IPHRLDKNPSSSKP-AKIDPLLHAFFRYQQT 548 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~-~~~~p~~v~~lhlvel~~r~~~~~-~~~~~~~~~~~~~~-~~~~~i~~af~~~~~~ 548 (779)
|||+|+...++....++.+..+. .. ....++++|+++......... ...+..+ ... ...++.++.+.+..+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~ 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD-ADCTLTLIHVKPEFMLYGEAVLAAYDEIE----MKEEEKAKLLTQKFSTFFTE 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC-TTEEEEEEEEECCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC-CCCEEEEEEEecCCCcccccccCcHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 79999999888888999988887 54 556899999988653221100 0000000 001 2234555555544332
Q ss_pred cCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEEE
Q 004016 549 NKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 549 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgIl 613 (779)
.++.++...... +..+.|++.|+ ++|+|+||.|+ + .+.. +++.++|++++||+|-|.
T Consensus 78 --~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 --KGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp --TTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEE
T ss_pred --CCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEe
Confidence 456666555544 78999999999 99999999987 2 2334 889999999999998764
No 31
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.80 E-value=3.9e-05 Score=73.50 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=80.0
Q ss_pred cceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEE--EEEecCCC--C-----C--CccchhhHHHHHHHhhhhcCC-CC
Q 004016 627 CRRVCVLFIGGADDREALALGARMGRNPSIHLTVT--RFVVTNPT--M-----S--DFIDEDRDQAMINDFRFVNLD-SK 694 (779)
Q Consensus 627 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~--~~~~~~~~--~-----~--~~~e~~~d~~~i~~~~~~~~~-~~ 694 (779)
. +|++++-|.+..+.|+++|.++|+ .+.+++++ ++++.... . + .+..++..++.++++.+.... ..
T Consensus 18 ~-~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv 95 (163)
T 1tq8_A 18 K-TVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA 95 (163)
T ss_dssp C-EEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred C-EEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5 899999999999999999999999 99999999 87653211 0 0 011122234556666554221 12
Q ss_pred C-EEEEEEeecChHHHHHHHHhhh--cCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEee
Q 004016 695 N-VEYVEEGVEEGFETLRIINAIA--NDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQ 771 (779)
Q Consensus 695 ~-v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq 771 (779)
+ +++ .+ ..|. ..+.|.+.+ .++||+|+|+++.. ++.+| -+|-+.+-++.. ++++||||..
T Consensus 96 ~~v~~--~v-~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~---a~~PVlvV~~ 158 (163)
T 1tq8_A 96 KNVEE--RP-IVGA-PVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSRR---AKVDVLIVHT 158 (163)
T ss_dssp CEEEE--EE-ECSS-HHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH---TTCEEEEECC
T ss_pred CeEEE--EE-ecCC-HHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHHh---CCCCEEEEeC
Confidence 2 333 22 2342 333443333 58999999998542 11121 388898999888 7899999986
Q ss_pred ec
Q 004016 772 QA 773 (779)
Q Consensus 772 ~~ 773 (779)
..
T Consensus 159 ~~ 160 (163)
T 1tq8_A 159 TE 160 (163)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 32
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.70 E-value=0.039 Score=58.94 Aligned_cols=69 Identities=6% Similarity=-0.004 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHhhhh-hhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhHHHHHHH
Q 004016 375 VKTFAIVIPCLYSKIPFMDALALGLLLNCR-GIYDIQVFTRAKQRLQITDESFAIMVITAMFQSAIIIPLVKL 446 (779)
Q Consensus 375 ~K~~~~~l~~~~~~~~~~~~l~lg~~l~~k-G~~~l~~~~~~~~~~~i~~~~f~~lv~~~ll~t~i~~plv~~ 446 (779)
.-+..++..++.+|.+.+|+..+++-.+.| ....+.++...+.. ++..--..++..+....+.+.+..+
T Consensus 240 ~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~ 309 (332)
T 3zux_A 240 IGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATY 309 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888999999999998854444 55666666554421 2333334445555655554444443
No 33
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.59 E-value=0.00015 Score=66.92 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=61.3
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEE-ec-C--------CCC-CCcc---chhhHHHHHHHhhhh---cC
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFV-VT-N--------PTM-SDFI---DEDRDQAMINDFRFV---NL 691 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~-~~-~--------~~~-~~~~---e~~~d~~~i~~~~~~---~~ 691 (779)
+|++++-|.++.+.|+++|.++|+..+.+++++|+. +. . ... +++. .++..++.++++ ++ ..
T Consensus 6 ~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 84 (138)
T 1q77_A 6 VLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLTGS 84 (138)
T ss_dssp EEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHHSC
T ss_pred EEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhhcc
Confidence 899999999999999999999999999999999998 52 0 011 1111 112234556666 43 12
Q ss_pred CCCCEEEEEEeecChHHHHHHHHhhhc--CCcEEEEcccC
Q 004016 692 DSKNVEYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRH 729 (779)
Q Consensus 692 ~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~ 729 (779)
.+ ++++. +..| +..+.|.+.++ ++||+++|+++
T Consensus 85 ~~-~~~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~g 119 (138)
T 1q77_A 85 TE-IPGVE---YRIG-PLSEEVKKFVEGKGYELVVWACYP 119 (138)
T ss_dssp CC-CCCEE---EECS-CHHHHHHHHHTTSCCSEEEECSCC
T ss_pred CC-cceEE---EEcC-CHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22 44442 2234 23344444444 79999999874
No 34
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.43 E-value=0.00027 Score=65.04 Aligned_cols=129 Identities=8% Similarity=0.055 Sum_probs=78.6
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEee-ec-cCCCC-cc-ccccccCCCCCCCCCCcchhHHHHHHHHH
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLE-EY-IGRSM-PV-VIPHRLDKNPSSSKPAKIDPLLHAFFRYQ 546 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlv-el-~~r~~-~~-~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 546 (779)
-|||+|+...++....++.+..+... ....++++|++ +. +.... .. -.+.... . ........++.++.++.++
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~ 81 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK-LGAELDILAVLEDVYNLERANVTFGLPFPPE-I-KEESKKRIERRLREVWEKL 81 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT-TCCEEEEEEECHHHHHHHHHHHHHCCCCCTH-H-HHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH-cCCeEEEEEEecccccccccccccCCCCChH-H-HHHHHHHHHHHHHHHHHHh
Confidence 37999999988888888888777754 45688999998 63 10000 00 0000000 0 0000011233444332210
Q ss_pred HhcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCCChhhHHHHHHhhhcCCCceEEE
Q 004016 547 QTNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTEPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 547 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~~~~~n~~vl~~apCsVgIl 613 (779)
. ...+ .++..... .+..+.|++.|++.++|+|+||.|+. ++.++|++++||+|-|.
T Consensus 82 ~-~~~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~g~------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 82 T-GSTE-IPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp H-SCCC-CCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG------GGTHHHHHHSSSEEEEC
T ss_pred h-ccCC-cceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCCCC------chHHHHHHhCCCceEee
Confidence 1 1222 44443332 47899999999999999999998853 67889999999997663
No 35
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.43 E-value=0.00062 Score=65.50 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=76.6
Q ss_pred eEEEeecCCc---------cHHHHHHHHHHHh-cC--CCeEEEEEEEEecCCCC--------CC--------ccchhhHH
Q 004016 629 RVCVLFIGGA---------DDREALALGARMG-RN--PSIHLTVTRFVVTNPTM--------SD--------FIDEDRDQ 680 (779)
Q Consensus 629 ~i~v~f~GG~---------ddreAL~~a~rma-~~--~~v~ltv~~~~~~~~~~--------~~--------~~e~~~d~ 680 (779)
+|++++-|.+ ..+.|+++|.+++ +. .+.+++++|+....... .. +..++..+
T Consensus 7 ~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (175)
T 2gm3_A 7 KVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGL 86 (175)
T ss_dssp EEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHH
T ss_pred EEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHHH
Confidence 8999999988 8899999999986 54 69999999998532110 00 01111234
Q ss_pred HHHHHhhhhcCCCCCEEEEEEeecChHHHHHHHHhhhc--CCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcC
Q 004016 681 AMINDFRFVNLDSKNVEYVEEGVEEGFETLRIINAIAN--DFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASD 758 (779)
Q Consensus 681 ~~i~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~ 758 (779)
+.++++.+... ...+.+...+ ..|. ..+.|.+.++ ++||+|+|+++.. ++.+| -+|-+.+-+...
T Consensus 87 ~~l~~~~~~~~-~~g~~~~~~v-~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~------~~~~~----~~Gsva~~vl~~ 153 (175)
T 2gm3_A 87 HLLEFFVNKCH-EIGVGCEAWI-KTGD-PKDVICQEVKRVRPDFLVVGSRGLG------RFQKV----FVGTVSAFCVKH 153 (175)
T ss_dssp HHHHHHHHHHH-HHTCEEEEEE-EESC-HHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCceEEEE-ecCC-HHHHHHHHHHHhCCCEEEEeCCCCC------hhhhh----hcCchHHHHHhC
Confidence 55666654421 1123332222 2332 3334443333 7999999987532 12121 378888889888
Q ss_pred CCCCceeEEEEeeec
Q 004016 759 DFKSRASVLVIQQQA 773 (779)
Q Consensus 759 d~~~~~SvLVvqq~~ 773 (779)
++++||||....
T Consensus 154 ---a~~pVlvv~~~~ 165 (175)
T 2gm3_A 154 ---AECPVMTIKRNA 165 (175)
T ss_dssp ---CSSCEEEEECCG
T ss_pred ---CCCCEEEEcCCc
Confidence 789999998653
No 36
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.36 E-value=0.00014 Score=75.27 Aligned_cols=129 Identities=29% Similarity=0.232 Sum_probs=83.1
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCC--------C--CCc----------cchhhHHHHHHHhhh
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPT--------M--SDF----------IDEDRDQAMINDFRF 688 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~--------~--~~~----------~e~~~d~~~i~~~~~ 688 (779)
+|++++-|.+.++.|+++|.++|++.+.+++++|+++.... . .++ ..++..++.++++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQ 81 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999864210 0 001 011222345555554
Q ss_pred hcC-CCCCEEEEEEeecChHHHHHHHHhhhcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEE
Q 004016 689 VNL-DSKNVEYVEEGVEEGFETLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVL 767 (779)
Q Consensus 689 ~~~-~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvL 767 (779)
... .+-++++. + ..|. ..+.|.+.+.++||+|+|+++... ++.+ --+|-.-+-++.. ++++||
T Consensus 82 ~~~~~g~~~~~~--~-~~g~-~~~~I~~~~~~~dliV~G~~g~~~-----~~~~----~~~Gs~~~~v~~~---a~~PVl 145 (268)
T 3ab8_A 82 SALAAGVAVEAV--L-EEGV-PHEAILRRARAADLLVLGRSGEAH-----GDGF----GGLGSTADRVLRA---SPVPVL 145 (268)
T ss_dssp HHHHTTCCEEEE--E-EEEC-HHHHHHHHHTTCSEEEEESSCTTS-----CTTC----CSCCHHHHHHHHH---CSSCEE
T ss_pred HHHhCCCCeEEE--E-ecCC-HHHHHHhhccCCCEEEEeccCCCc-----cccc----cccchhHHHHHHh---CCCCEE
Confidence 321 12233332 2 2332 333444447899999999875310 1111 2389888999988 889999
Q ss_pred EEeeec
Q 004016 768 VIQQQA 773 (779)
Q Consensus 768 Vvqq~~ 773 (779)
||....
T Consensus 146 vv~~~~ 151 (268)
T 3ab8_A 146 LAPGEP 151 (268)
T ss_dssp EECSSC
T ss_pred EECCCC
Confidence 998653
No 37
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.33 E-value=0.00016 Score=76.66 Aligned_cols=131 Identities=19% Similarity=0.182 Sum_probs=85.1
Q ss_pred cceEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCC------CCc---cchhhHHHHHHHhhhhcCC----C
Q 004016 627 CRRVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTM------SDF---IDEDRDQAMINDFRFVNLD----S 693 (779)
Q Consensus 627 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~------~~~---~e~~~d~~~i~~~~~~~~~----~ 693 (779)
+ +|+++.-|.++++.|+++|.++|++.+.+++++|++++.... ..+ ..++..++.++++.+.... .
T Consensus 20 ~-~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 98 (309)
T 3cis_A 20 L-GIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLRA 98 (309)
T ss_dssp T-EEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred C-eEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5 899999999999999999999999999999999998642210 000 0112223444444432110 1
Q ss_pred CCEEEEEEeecChHHHHHHHHhhhcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeeec
Q 004016 694 KNVEYVEEGVEEGFETLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQA 773 (779)
Q Consensus 694 ~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~~ 773 (779)
..+.+..++. .| +..+.|.+.++++||+|+|+++.. .|. ..-+|-..+-++.. ++++||||....
T Consensus 99 ~~~~~~~~~~-~g-~~~~~I~~~a~~~DliV~G~~g~~---------~~~-~~~~Gs~~~~vl~~---~~~PVlvv~~~~ 163 (309)
T 3cis_A 99 GPPTVHSEIV-PA-AAVPTLVDMSKDAVLMVVGCLGSG---------RWP-GRLLGSVSSGLLRH---AHCPVVIIHDED 163 (309)
T ss_dssp CCSCEEEEEE-SS-CHHHHHHHHGGGEEEEEEESSCTT---------CCT-TCCSCHHHHHHHHH---CSSCEEEECTTC
T ss_pred CCceEEEEEe-cC-CHHHHHHHHhcCCCEEEECCCCCc---------ccc-ccccCcHHHHHHHh---CCCCEEEEcCCc
Confidence 1233322332 34 344556555679999999997532 111 12489999999988 789999998664
No 38
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.31 E-value=0.00033 Score=73.48 Aligned_cols=118 Identities=14% Similarity=0.007 Sum_probs=79.1
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeecChHH
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEGFE 708 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~e 708 (779)
+|++++-|.+.++.|+.+|.++|++.+.+++++|+..+ ++.++.+ +++.+++... .-++.+ .+...+ +
T Consensus 9 ~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-----~~~~~~l-~~~~~~~~~~---~~~~~~--~~~~~g-~ 76 (290)
T 3mt0_A 9 SILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-----RDHSAAL-NDLAQELREE---GYSVST--NQAWKD-S 76 (290)
T ss_dssp EEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-----SCCHHHH-HHHHHHHHHT---TCCEEE--EEECSS-S
T ss_pred eEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc-----HHHHHHH-HHHHHHHhhC---CCeEEE--EEEeCC-C
Confidence 89999999999999999999999999999999999863 2223333 2334444321 223333 333222 2
Q ss_pred HHHHHHhh--hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEee
Q 004016 709 TLRIINAI--ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQ 771 (779)
Q Consensus 709 ~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq 771 (779)
..+.|.+. +.++||+|+|+++.. ++. .--+|..-+-+... +++.||||..
T Consensus 77 ~~~~i~~~a~~~~~dliV~G~~~~~------~~~----~~~~gs~~~~vl~~---~~~PVlvv~~ 128 (290)
T 3mt0_A 77 LHQTIIAEQQAEGCGLIIKQHFPDN------PLK----KAILTPDDWKLLRF---APCPVLMTKT 128 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCSC------TTS----TTSCCHHHHHHHHH---CSSCEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEecccCC------chh----hcccCHHHHHHHhc---CCCCEEEecC
Confidence 23334333 458999999998532 111 12378888888887 7889999984
No 39
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.21 E-value=0.00065 Score=72.04 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=81.5
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCC--CC----Cccc---h---hhHHHHHHHhhhhcCCCCCE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPT--MS----DFID---E---DRDQAMINDFRFVNLDSKNV 696 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~--~~----~~~e---~---~~d~~~i~~~~~~~~~~~~v 696 (779)
+|+++.-|.++.+.|+.+|.++|++.+++|+++|++.+... .. +..+ + +.-++.++++.++.. ...+
T Consensus 9 ~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v 87 (319)
T 3olq_A 9 NLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYL-EAGI 87 (319)
T ss_dssp EEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 89999999999999999999999999999999999853110 00 0000 0 111244555544421 1223
Q ss_pred EEEEEeecChHHHHHHHHhh-hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEeeeccC
Q 004016 697 EYVEEGVEEGFETLRIINAI-ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQQAYA 775 (779)
Q Consensus 697 ~y~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq~~~~ 775 (779)
.+.-.++..+.-...+++.. +.++||+|+|+++.. . + +.--+|..-+-+... +++.||||.++...
T Consensus 88 ~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~--~----~----~~~~~Gs~~~~vl~~---~~~PVlvv~~~~~~ 154 (319)
T 3olq_A 88 QIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHD--K----L----GSLIFTPLDWQLLRK---CPAPVWMVKDKEWP 154 (319)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--------C----CSCBCCHHHHHHHHH---CSSCEEEEESSCCC
T ss_pred eEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCc--h----h----hcccccccHHHHHhc---CCCCEEEecCcccc
Confidence 33223321232222233332 247999999998632 1 1 122478888888877 78899999876543
No 40
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.14 E-value=0.001 Score=69.79 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=83.0
Q ss_pred cceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhc
Q 004016 470 ELRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTN 549 (779)
Q Consensus 470 e~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 549 (779)
.-||++|+...+.....++.+..+... ....++++|+.+... .++.++.+.++-+.
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~-~~~~l~ll~v~~~~~----------------------~~~~l~~~~~~l~~- 225 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKK-TGGELHIIHVSEDGD----------------------KTADLRVMEEVIGA- 225 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSC----------------------CHHHHHHHHHHHHH-
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhh-cCCEEEEEEEccCch----------------------HHHHHHHHHHHHHH-
Confidence 458999998887777777777766543 334689999976432 13334444444332
Q ss_pred CcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCC---ChhhHHHHHHhhhcCCCceEEE
Q 004016 550 KAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE---PTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 550 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~---~~~~~~~n~~vl~~apCsVgIl 613 (779)
.++.++.... . .+..+.|++.|++.++|+|+||.++.. +..++++.+++++++||+|-|+
T Consensus 226 -~~~~~~~~~~-~--g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 226 -EGIEVHVHIE-S--GTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp -TTCCEEEEEE-C--SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEE
T ss_pred -cCCcEEEEEe-c--CCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEE
Confidence 2344554333 2 488999999999999999999998732 4468999999999999998776
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=94.54 E-value=0.32 Score=50.07 Aligned_cols=220 Identities=11% Similarity=0.044 Sum_probs=135.9
Q ss_pred ccceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCc-chhHHHHHHHHHH
Q 004016 469 AELRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAK-IDPLLHAFFRYQQ 547 (779)
Q Consensus 469 ~e~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~-~~~i~~af~~~~~ 547 (779)
-.-.+|++..+|..-.+++.++..+..+ ...+.+.++. ++... .. .++ +.++++|-+
T Consensus 19 WrP~iLV~sg~p~~~~~li~la~~lt~~--~G~ltv~~i~--p~~~~-----------------~~l~~q-l~~l~~~l~ 76 (294)
T 3g40_A 19 WKANLLVPVEDPRELMGTFDFLRDITYP--KGSVKLLGLA--GNTDK-----------------ENLLSQ-LPSISEGFQ 76 (294)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHHTT--TCEEEEEECC-----CT-----------------TCHHHH-HHHHHHHHH
T ss_pred CCCcEEEecCCchhhhhHHHHHHHhccC--ceeEEEEEEc--cCCCc-----------------cHHHHH-HHHHHHHHH
Confidence 3457999999999999999999999864 4566777774 21111 11 122 355566644
Q ss_pred hcCcceEEEEEEEeccCCChHHHHHHHHhhc-----CccEEEecccc--CCChhhHHHHHHhhhcCCCceEEEecCCCcc
Q 004016 548 TNKAYVSVQCFTAVAPYASMHDDICSMAFQK-----ATSLIIFPFLK--TEPTLTKKVINNVLSMSPCSIGLLYDRSLAI 620 (779)
Q Consensus 548 ~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~~~lIilp~h~--~~~~~~~~~n~~vl~~apCsVgIlvdrg~~~ 620 (779)
.. + ++.+.++-.-.+.++++-.+.+.. +.+.|+|+|.. +....++.+.++..+. --.|-||-+.....
T Consensus 77 ~r--~--v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~~~i~~~~~~-~~nVlil~~~~~~~ 151 (294)
T 3g40_A 77 EE--G--VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRKASMY-RMGVLLFSKHPQAG 151 (294)
T ss_dssp HT--T--CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHHHHHHHHHHT-TCEEEEEECCTTTT
T ss_pred hC--C--ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHHHHHHHHHHh-CceEEEEecCCccC
Confidence 32 2 444444444457788988888776 57999999976 2345788888776544 55665654322111
Q ss_pred cccccccceEEEeec--------CC--ccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 621 DYRSFQCRRVCVLFI--------GG--ADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 621 ~~~~~~~~~i~v~f~--------GG--~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
... . + +|=+=.- || .+-..++-+|-.+.++.++++.++.++++ |.+++.-++.++++.+..
T Consensus 152 fg~-~-~-~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a~~~l~~Lv~~~ 222 (294)
T 3g40_A 152 LGR-Q-N-LINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAAENFLQSLAELA 222 (294)
T ss_dssp TTT-S-C-EEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHHHHHHHHHHHHH
T ss_pred CCC-C-c-eEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHHHHHHHHHHHHh
Confidence 111 1 3 4443322 22 35567999999999999999999999865 234555567788777764
Q ss_pred CCCCCEEEEEEeecChHHHHHHHHhhhcCCcEEEEcccCCC
Q 004016 691 LDSKNVEYVEEGVEEGFETLRIINAIANDFDLFLAGRRHEG 731 (779)
Q Consensus 691 ~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~ 731 (779)
--.... + +|. .+..+++++. .+-||+++|-....
T Consensus 223 Ri~a~~-~---vv~--~~F~~il~~s-~~ADL~flGl~~~~ 256 (294)
T 3g40_A 223 RIPNVK-M---QVL--RENPIKSSKL-PFASLHIFSLDPNP 256 (294)
T ss_dssp TCCSCE-E---EEE--SSCTTTSSSC-CCCSEEEEECCSSC
T ss_pred cCCceE-E---Eec--CchHHHHhhC-cCCCEEEEcCCCCC
Confidence 322222 2 222 4445567774 67899999987654
No 42
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=69.50 E-value=9.1 Score=38.77 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEE-Ee----ecChHHH
Q 004016 637 GADDREALALGARMGRNPSI--HLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVE-EG----VEEGFET 709 (779)
Q Consensus 637 G~ddreAL~~a~rma~~~~v--~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e-~~----v~~~~e~ 709 (779)
.|.|.+|++.|.|+++. +. +++++.+-++ + . ++.+++.... .-+++-..+ -- --+...+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~---------~-a-~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 101 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK---------Q-A-AETLRTALAM--GADRAILVVAADDVQQDIEPLAV 101 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG---------G-G-HHHHHHHHHH--TCSEEEEEECCSSTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh---------h-H-HHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 48999999999999987 55 8887766532 1 1 2333333222 233444333 11 1234455
Q ss_pred HHHHHhhh--cCCcEEEEcccCCC-----Ccccccccccc
Q 004016 710 LRIINAIA--NDFDLFLAGRRHEG-----CLHVLQGLGEW 742 (779)
Q Consensus 710 ~~~i~~~~--~~~dL~iVGr~~~~-----~s~~~~gl~~w 742 (779)
..++.+.. .+||+++.|++... -.|+++.+.+|
T Consensus 102 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 102 AKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 55555542 36999999998732 24666666666
No 43
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=67.84 E-value=11 Score=38.33 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEE-Ee----ecChHHH
Q 004016 637 GADDREALALGARMGRNPSI--HLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVE-EG----VEEGFET 709 (779)
Q Consensus 637 G~ddreAL~~a~rma~~~~v--~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e-~~----v~~~~e~ 709 (779)
.|.|.+|++.|.|+.+. +. +++++.+-++. .++.+++.... .-+++-..+ -- --+...+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 104 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------CQETIRTALAM--GADRGIHVEVPPAEAERLGPLQV 104 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------HHHHHHHHHHH--TCSEEEEEECCHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 48999999999999977 55 88877665321 12334433222 233444333 10 1134445
Q ss_pred HHHHHhhh--cCCcEEEEcccCCC-----Cccccccccccc
Q 004016 710 LRIINAIA--NDFDLFLAGRRHEG-----CLHVLQGLGEWI 743 (779)
Q Consensus 710 ~~~i~~~~--~~~dL~iVGr~~~~-----~s~~~~gl~~w~ 743 (779)
..+|.+.. .+||+++.|++... -.|.++.+.+|.
T Consensus 105 A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~ 145 (255)
T 1efv_B 105 ARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWP 145 (255)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCC
Confidence 55555542 36999999998732 246666666773
No 44
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=66.41 E-value=6.6 Score=40.12 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=54.1
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEee---cChHHHHH
Q 004016 637 GADDREALALGARMGRNPSI--HLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGV---EEGFETLR 711 (779)
Q Consensus 637 G~ddreAL~~a~rma~~~~v--~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v---~~~~e~~~ 711 (779)
.|.|.+|++.|.|+++..+. +++++.+-++ + . ++.+++.... .-+++-..+--- -+...+..
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G~~---------~-~-~~~lr~ala~--GaD~vi~v~d~~~~~~~~~~~a~ 102 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD---------R-V-DESLRKCLAK--GADRAVRVWDDAAEGSDAIVVGR 102 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG---------G-G-HHHHHHHHHT--TCSEEEEECCGGGTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeCch---------h-H-HHHHHHHHhc--CCCEEEEEcCcccccCCHHHHHH
Confidence 48999999999999876554 8887766432 1 1 2334443222 233443332110 13344555
Q ss_pred HHHhhh--cCCcEEEEcccCCC-----Ccccccccccc
Q 004016 712 IINAIA--NDFDLFLAGRRHEG-----CLHVLQGLGEW 742 (779)
Q Consensus 712 ~i~~~~--~~~dL~iVGr~~~~-----~s~~~~gl~~w 742 (779)
+|.+.. .+||+++.|++... -.|.++.+.+|
T Consensus 103 ~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 103 ILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 555542 27999999998732 24566666666
No 45
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=61.77 E-value=1e+02 Score=32.26 Aligned_cols=73 Identities=10% Similarity=-0.008 Sum_probs=42.7
Q ss_pred HhhHHHHHHHhcccccccccch--hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCChHHHHHHHHHh-hhhhhhHHH
Q 004016 338 VAFIPCFIINTGRRVDLYSIQF--NHFLAVEMVILIAGTVKTFAIVIPCLYSKIPFMDALALGLLL-NCRGIYDIQ 410 (779)
Q Consensus 338 ~lflPlFF~~~G~~~d~~~l~~--~~~~~~~~iiv~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~l-~~kG~~~l~ 410 (779)
...+++.+...|++++..++.. ..+.......+.-++...+.++..++.++.+......+-+.. .|-|..+.+
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v 121 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV 121 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHH
Confidence 3456677788899999988853 234433344445556667777777777777654333322222 334444444
No 46
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=60.61 E-value=9.3 Score=40.26 Aligned_cols=56 Identities=11% Similarity=-0.034 Sum_probs=39.6
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcC
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNL 691 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~ 691 (779)
++++.|.||+|+--.|.++.+.....+..+.++++-.. .+-.-+.++++++.++..
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg-------~~~~et~~~v~~~~~~~g 103 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR-------WKFQEMYRFRDQMVEEMG 103 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS-------CCCHHHHHHHHHHHHTTT
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC-------CCCHHHHHHHHHHHHHcC
Confidence 78999999999999999999987644555666666332 111224577888877653
No 47
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=56.13 E-value=2.8 Score=28.30 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHHcCc
Q 004016 176 RSTLPMVATLEATISFHVILANLTELKL 203 (779)
Q Consensus 176 ~~~~l~lg~~ls~Ts~~vv~~iL~el~l 203 (779)
|..++++|+++|.|++..+..++++++.
T Consensus 3 ~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 3 KKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 4667899999999999999999999885
No 48
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=51.06 E-value=55 Score=33.89 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=54.3
Q ss_pred eEEEeecCCccHHHHHHHHHHHhc------------------CCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMGR------------------NPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~------------------~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
++++-|.||+|+--.|.++.+... .++..+.++++... .+-.-..++++++.++.
T Consensus 55 ~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg-------~~fpet~~fv~~~~~~y 127 (306)
T 2wsi_A 55 EISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQE-------ETFPTLENFVLETSERY 127 (306)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCT-------TCCHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCC-------CCCHHHHHHHHHHHHHc
Confidence 799999999999999999888631 12455666666432 22333467788887765
Q ss_pred CCCCCEEEEEEeec-----ChHHHHHHHHhhhcCCcEEEEcccCCC
Q 004016 691 LDSKNVEYVEEGVE-----EGFETLRIINAIANDFDLFLAGRRHEG 731 (779)
Q Consensus 691 ~~~~~v~y~e~~v~-----~~~e~~~~i~~~~~~~dL~iVGr~~~~ 731 (779)
. +.......+ .-.+............+.+++|.|.+.
T Consensus 128 g----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 128 C----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp T----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred C----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 3 222111110 112222222222335789999998764
No 49
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=38.78 E-value=44 Score=36.49 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=60.5
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcC-CCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeec---
Q 004016 629 RVCVLFIGGADDREALALGARMGRN-PSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVE--- 704 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~-~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~--- 704 (779)
+|+|.+.||+|.--.|.++.++.++ .+.++.++|+...-. .+.+.|.+.++++.++..- .+....++
T Consensus 15 ~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-----~~s~~~~~~v~~~~~~lgi----~~~v~~~~~~~ 85 (433)
T 1ni5_A 15 QILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-----ANADAWVTHCENVCQQWQV----PLVVERVQLAQ 85 (433)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-----SSHHHHHHHHHHHHHHTTC----CEEEECCCCCC
T ss_pred EEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-----cccHHHHHHHHHHHHHcCC----cEEEEEecCCC
Confidence 8999999999999999999998877 889999999854311 1233456778888776532 22111111
Q ss_pred ---ChHHHH-----HHHHhhhcCCcEEEEcccC
Q 004016 705 ---EGFETL-----RIINAIANDFDLFLAGRRH 729 (779)
Q Consensus 705 ---~~~e~~-----~~i~~~~~~~dL~iVGr~~ 729 (779)
+.++.. ..+.+.+.++|.+..|-+.
T Consensus 86 ~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~ 118 (433)
T 1ni5_A 86 EGLGIEAQARQARYQAFARTLLPGEVLVTAQHL 118 (433)
T ss_dssp SSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccc
Confidence 122222 2344555668888888653
No 50
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=38.23 E-value=2.7e+02 Score=26.46 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=81.8
Q ss_pred EEEEeccCCChHHHHHHHHhhcCccEEEeccccCCChhhHHHHHHhhhcCCCceEEEecCCCc----ccccccccceEEE
Q 004016 557 CFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTEPTLTKKVINNVLSMSPCSIGLLYDRSLA----IDYRSFQCRRVCV 632 (779)
Q Consensus 557 ~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~~~~~n~~vl~~apCsVgIlvdrg~~----~~~~~~~~~~i~v 632 (779)
+...++||..|.+-+-+++.++..++-+.- ..-+... ...++. +.-|+ |++.||.. ..... . -|+-
T Consensus 6 ~I~~iapy~~l~~~~~~i~~e~~~~i~i~~--~~l~~~v-~~a~~~--~~~~d--VIISRGgta~~lr~~~~--i-PVV~ 75 (196)
T 2q5c_A 6 KIALISQNENLLNLFPKLALEKNFIPITKT--ASLTRAS-KIAFGL--QDEVD--AIISRGATSDYIKKSVS--I-PSIS 75 (196)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCEEEEEE--CCHHHHH-HHHHHH--TTTCS--EEEEEHHHHHHHHTTCS--S-CEEE
T ss_pred cEEEEEccHHHHHHHHHHHhhhCCceEEEE--CCHHHHH-HHHHHh--cCCCe--EEEECChHHHHHHHhCC--C-CEEE
Confidence 456778888888877777776655443321 1101111 122333 45577 88889854 21211 3 5777
Q ss_pred eecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEeecChHHHHHH
Q 004016 633 LFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEGVEEGFETLRI 712 (779)
Q Consensus 633 ~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~e~~~~ 712 (779)
+-..|-|=-.||..|++..+ ++.++-+-..- ..+ +.+.++-. +......+++.+|..+.
T Consensus 76 I~~s~~Dil~al~~a~~~~~----kIavvg~~~~~--------~~~--~~~~~ll~-------~~i~~~~~~~~~e~~~~ 134 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN----ELALIAYKHSI--------VDK--HEIEAMLG-------VKIKEFLFSSEDEITTL 134 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS----EEEEEEESSCS--------SCH--HHHHHHHT-------CEEEEEEECSGGGHHHH
T ss_pred EcCCHhHHHHHHHHHHhhCC----cEEEEeCcchh--------hHH--HHHHHHhC-------CceEEEEeCCHHHHHHH
Confidence 77777898999998887643 77766663210 111 22333322 23444566888999999
Q ss_pred HHhhhc-CCcEEEEcc
Q 004016 713 INAIAN-DFDLFLAGR 727 (779)
Q Consensus 713 i~~~~~-~~dL~iVGr 727 (779)
++++.+ ++|. |||.
T Consensus 135 i~~l~~~G~~v-vVG~ 149 (196)
T 2q5c_A 135 ISKVKTENIKI-VVSG 149 (196)
T ss_dssp HHHHHHTTCCE-EEEC
T ss_pred HHHHHHCCCeE-EECC
Confidence 988865 6887 5564
No 51
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=35.36 E-value=48 Score=34.44 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=43.4
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeE-EEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIH-LTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~-ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
+|++.+.||+|.--.|.++.+..+..+.+ +.++|+-.+-. .+...|.+.++++.++.
T Consensus 26 ~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r-----~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 26 RVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----ESAERDEEFCKEFAKER 83 (317)
T ss_dssp EEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----THHHHHHHHHHHHHHHH
T ss_pred EEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC-----cccHHHHHHHHHHHHHc
Confidence 89999999999999999999988777777 88888854311 12344567788887765
No 52
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=34.80 E-value=39 Score=37.30 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=45.5
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
+|+|.+.||+|.--.|.++.++.++.+.++.++|+...-. ..+.+.|.+.++++.++.
T Consensus 20 ~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr----g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 20 AVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR----GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp BEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC----THHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC----ccccHHHHHHHHHHHHHc
Confidence 8999999999999999999999888888999999964411 012345667888888765
No 53
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=34.49 E-value=34 Score=35.49 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=49.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHh-c-----------------CCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMG-R-----------------NPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
++++.|.||+|+--.|.++.+.- + .|...+.|+++-.... -.+. .++++++.++.
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~-----FpET--~ef~d~~~~~y 132 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDT-----FKTL--ENFIEETSLRY 132 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTC-----CHHH--HHHHHHHHHHT
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCC-----CHHH--HHHHHHHHHHh
Confidence 69999999999999999998752 1 1223555555532210 1122 46777777765
Q ss_pred CCCCCEEEEEEeecC---hHHHHHHHHhhhcCCcEEEEcccCC
Q 004016 691 LDSKNVEYVEEGVEE---GFETLRIINAIANDFDLFLAGRRHE 730 (779)
Q Consensus 691 ~~~~~v~y~e~~v~~---~~e~~~~i~~~~~~~dL~iVGr~~~ 730 (779)
.. .......+. -.+....+++....+|.+|.|.|++
T Consensus 133 gL----~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 133 SL----SLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp TE----EEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CC----cEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 32 211111111 1122233444444699999999987
No 54
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=32.63 E-value=1.9 Score=29.19 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHhcchhhHHHHHHHhhcCCC
Q 004016 295 VVALVGELTGQNSYLGPFILGITTPVT 321 (779)
Q Consensus 295 ~~~~~se~lg~~~~lGaflaGL~l~~~ 321 (779)
+++.++|.+|++++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 456788999999999999999998764
No 55
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=28.67 E-value=60 Score=32.66 Aligned_cols=55 Identities=4% Similarity=-0.083 Sum_probs=39.1
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcC
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNL 691 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~ 691 (779)
++++-|.||+|+--.|.++.+...+ +..+.++++-.. .+-.-+.++++++.++..
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg-------~~~~et~~~v~~~~~~~g 97 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTL-------HHFPQTLTLKNEIEKKYY 97 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCS-------CBCHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCC-------CCCHHHHHHHHHHHHHhC
Confidence 7899999999999999999998765 445566665322 112234677888877764
No 56
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=27.65 E-value=72 Score=30.80 Aligned_cols=51 Identities=12% Similarity=-0.011 Sum_probs=36.4
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
+|+|-|.||+|+--.|.++.+.. + ++.++++-.. .+..-+.++++++.++.
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g-------~~~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTG-------YLFPETYRFIDELTDKL 96 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECS-------CBCHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCC-------CCCHHHHHHHHHHHHHh
Confidence 89999999999999999998885 3 3556666433 11223467788887765
Done!