Query 004016
Match_columns 779
No_of_seqs 285 out of 1965
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 11:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004016.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004016hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mjha_ c.26.2.4 (A:) "Hypothe 98.4 8.1E-07 5.9E-11 82.6 12.4 140 472-615 5-157 (160)
2 d1jmva_ c.26.2.4 (A:) Universa 98.4 2.5E-07 1.8E-11 84.0 8.0 133 472-613 4-136 (140)
3 d2z3va1 c.26.2.4 (A:2-136) Hyp 98.3 1.9E-07 1.4E-11 84.4 4.3 129 472-612 3-134 (135)
4 d2z3va1 c.26.2.4 (A:2-136) Hyp 98.1 3.3E-06 2.4E-10 75.9 8.3 123 629-769 3-135 (135)
5 d2gm3a1 c.26.2.4 (A:5-175) Put 98.0 8.4E-06 6.1E-10 76.6 9.8 139 471-614 2-158 (171)
6 d1tq8a_ c.26.2.4 (A:) Hypothet 98.0 1.5E-05 1.1E-09 72.4 11.0 134 472-613 7-144 (147)
7 d1mjha_ c.26.2.4 (A:) "Hypothe 98.0 9.2E-06 6.7E-10 75.1 9.7 129 629-773 5-159 (160)
8 d1jmva_ c.26.2.4 (A:) Universa 97.9 2.9E-05 2.1E-09 69.7 10.9 122 629-771 4-138 (140)
9 d1tq8a_ c.26.2.4 (A:) Hypothet 97.8 2.1E-05 1.5E-09 71.4 8.3 129 629-771 7-146 (147)
10 d1q77a_ c.26.2.4 (A:) Hypothet 97.6 7.9E-05 5.8E-09 66.4 9.6 37 629-665 6-42 (138)
11 d1q77a_ c.26.2.4 (A:) Hypothet 97.2 9.7E-05 7.1E-09 65.8 3.7 131 471-612 5-136 (138)
12 d2gm3a1 c.26.2.4 (A:5-175) Put 96.6 0.004 2.9E-07 57.4 10.0 128 629-772 3-160 (171)
13 d3clsc1 c.26.2.3 (C:1-262) Sma 64.9 1.3 9.2E-05 43.0 2.3 102 636-753 35-148 (262)
14 d1efpb_ c.26.2.3 (B:) Small, b 64.8 3.2 0.00023 39.5 5.2 30 637-666 36-66 (246)
15 d1efvb_ c.26.2.3 (B:) Small, b 53.4 4 0.00029 38.9 3.7 105 637-754 36-150 (252)
16 d1ni5a1 c.26.2.5 (A:0-226) tRN 41.0 24 0.0017 32.3 7.1 57 629-690 15-72 (227)
17 d1wy5a1 c.26.2.5 (A:1-216) Til 39.0 27 0.002 31.7 7.0 57 629-690 26-83 (216)
18 d2nqra3 c.57.1.2 (A:178-326) M 30.0 72 0.0053 26.9 7.9 51 676-728 25-75 (149)
19 d1zuna1 c.26.2.2 (A:1-211) Sul 28.1 22 0.0016 31.0 4.3 55 629-690 28-82 (211)
20 d2c5sa1 c.26.2.6 (A:174-391) T 25.9 25 0.0018 31.5 4.2 34 629-666 6-39 (218)
21 d1gsoa2 c.30.1.1 (A:-2-103) Gl 20.2 11 0.00082 30.5 0.3 34 704-743 53-86 (105)
No 1
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.41 E-value=8.1e-07 Score=82.57 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=88.3
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCC-CCCCCCc--------chhHHHHH
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNP-SSSKPAK--------IDPLLHAF 542 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~-~~~~~~~--------~~~i~~af 542 (779)
|||+|+...+.....++.+..++.. ....++++|+++.................. ....... .++.-+.+
T Consensus 5 ~ILvavD~s~~s~~al~~a~~la~~-~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (160)
T d1mjha_ 5 KILYPTDFSETAEIALKHVKAFKTL-KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKM 83 (160)
T ss_dssp EEEEECCSCHHHHHHHHHHHHTCCS-SCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh-cCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888888899888887765 445899999998764432211111000000 0000000 01111222
Q ss_pred HHHHHh-cCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEEEec
Q 004016 543 FRYQQT-NKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGLLYD 615 (779)
Q Consensus 543 ~~~~~~-~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgIlvd 615 (779)
+.+.+. ...++.++...... +..+.||+.|++.++|+|+||.|+ + .+..+|++.++|++++||+|-|.-.
T Consensus 84 ~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~pVlvV~~ 157 (160)
T d1mjha_ 84 ENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKR 157 (160)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEEec---cHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCCCEEEEcC
Confidence 222211 12356777665554 789999999999999999999987 2 3556799999999999999888743
No 2
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}
Probab=98.39 E-value=2.5e-07 Score=84.01 Aligned_cols=133 Identities=7% Similarity=0.036 Sum_probs=89.9
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcCc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNKA 551 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 551 (779)
|||+|+...+.-...+..+..+... ....++++|+++......+-..+....+ ......++..+.++...+..
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~~a~~-~~~~v~~lhv~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-- 76 (140)
T d1jmva_ 4 HILVAVDLSEESPILLKKAVGIAKR-HDAKLSIIHVDVNFSDLYTGLIDVNMSS----MQDRISTETQKALLDLAESV-- 76 (140)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHH-HTCEEEEEEEEECCGGGCCCCEEHHHHH----HTTCCCCHHHHHHHHHHHHS--
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHH-cCCeEEEEEEeeecccccccccccchHH----HHHHHHHHHHHHHHHHHHhc--
Confidence 8999999999999999988777654 3457999999876543222111100000 01122244555555554432
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCCChhhHHHHHHhhhcCCCceEEE
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTEPTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~~~~~n~~vl~~apCsVgIl 613 (779)
+.......... .+..+.|++.|++.++|+||+|.|+.....++++.+.+++++||+|-|.
T Consensus 77 ~~~~~~~~~~~--~~~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~li~~~~~pVliV 136 (140)
T d1jmva_ 77 DYPISEKLSGS--GDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVV 136 (140)
T ss_dssp SSCCCCEEEEE--ECHHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCceEEEEEEe--cCHHHHHHHhhhhchhhEEEeccCCCCCCCcccHHHHHHhccCCCEEEE
Confidence 22223333333 5789999999999999999999887555568899999999999998876
No 3
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Probab=98.28 E-value=1.9e-07 Score=84.38 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=83.2
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcCc
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNKA 551 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 551 (779)
|||+|+...++....++.+..++.. ...+++++|+++...... .+...++ ......++..+.++++.+.+
T Consensus 3 ~Ilv~~D~s~~s~~a~~~a~~~a~~-~~~~l~ll~V~~~~~~~~----~~~~~~~---~~~~~~~~~~~~l~~~~~~~-- 72 (135)
T d2z3va1 3 TILLAYDGSEHARRAAEVAKAEAEA-HGARLIVVHAYEPVPDYL----GEPFFEE---ALRRRLERAEGVLEEARALT-- 72 (135)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHH-HTCEEEEEEEECCCCTTC----CTTHHHH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH-cCCEEEEEEEecCCcccc----ccchhHH---HHHHHHHHHHHHHHHHHHhc--
Confidence 7999999888888888888777654 445789999987432221 1110000 00011223333344443321
Q ss_pred ceEEEEEEEeccCCChHHHHHHHHhhcCccEEEecccc-C--CChhhHHHHHHhhhcCCCceEE
Q 004016 552 YVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLK-T--EPTLTKKVINNVLSMSPCSIGL 612 (779)
Q Consensus 552 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~-~--~~~~~~~~n~~vl~~apCsVgI 612 (779)
+.........+ .+..+.||+.|+++++|+||||.|+ + .+-.+|++.+++++++||+|-|
T Consensus 73 ~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~ll~~~~~pVlv 134 (135)
T d2z3va1 73 GVPKEDALLLE--GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLL 134 (135)
T ss_dssp CCCGGGEEEEE--SCHHHHHHHHHHHTTCSEEEEESSCSSSCBCSSCBHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEEEc--CChHHHHHHHhhhhheeeEEeccCCCCcccccccCcHHHHHHHhCCCCEEe
Confidence 12222222223 5789999999999999999999998 3 2457889999999999999866
No 4
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Probab=98.09 E-value=3.3e-06 Score=75.86 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=78.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCC--Cc------cchhhHHHHHHHhhhhcCCCCCEEEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMS--DF------IDEDRDQAMINDFRFVNLDSKNVEYVE 700 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~--~~------~e~~~d~~~i~~~~~~~~~~~~v~y~e 700 (779)
+|++++-|.+..+.|+.+|..+|++.+.+++++|++++..... .. ++.+.-++.++++.+..... .. +
T Consensus 3 ~Ilv~~D~s~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---~ 78 (135)
T d2z3va1 3 TILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVP-KE---D 78 (135)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCC-GG---G
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC-eE---E
Confidence 8999999999999999999999999999999999997532211 10 01111124455555433221 11 1
Q ss_pred EeecChHHHHHHHHhh--hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEE
Q 004016 701 EGVEEGFETLRIINAI--ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVI 769 (779)
Q Consensus 701 ~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVv 769 (779)
.++..|. ..+.|.+. ..+.||+|+|+++.. ++.+| -+|-..+-+... ++++||||
T Consensus 79 ~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~ll~~---~~~pVlvV 135 (135)
T d2z3va1 79 ALLLEGV-PAEAILQAARAEKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE---APCPVLLV 135 (135)
T ss_dssp EEEEESC-HHHHHHHHHHHTTCSEEEEESSCSS------SCBCS----SCBHHHHHHHHH---CSSCEEEE
T ss_pred EEEEcCC-hHHHHHHHhhhhheeeEEeccCCCC------ccccc----ccCcHHHHHHHh---CCCCEEeC
Confidence 2222222 22333333 248999999987632 22222 389999999988 88999997
No 5
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.00 E-value=8.4e-06 Score=76.55 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=77.0
Q ss_pred ceEEEeecCCC---------ChHHHHHHH-HhcCCC-CCCceEEEEEeeeccCCCCccccccccC----CCCCCCCCCcc
Q 004016 471 LRILVCIPEND---------HVPTAINLL-KASNPP-QSHVGVYVMNLEEYIGRSMPVVIPHRLD----KNPSSSKPAKI 535 (779)
Q Consensus 471 ~riLv~i~~~~---------~v~~li~L~-~~~~~~-~~p~~v~~lhlvel~~r~~~~~~~~~~~----~~~~~~~~~~~ 535 (779)
-||++|+.+.+ .-...++-+ +.+... .+...++++|+.+......+........ .........+.
T Consensus 2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (171)
T d2gm3a1 2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 81 (171)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred CEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHHH
Confidence 38999998643 122233332 333333 5667899999887544322111110000 00000011123
Q ss_pred hhHHHHHHHHHHhcCcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccC---CChhhHHHHHHhhhcCCCceEE
Q 004016 536 DPLLHAFFRYQQTNKAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKT---EPTLTKKVINNVLSMSPCSIGL 612 (779)
Q Consensus 536 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~---~~~~~~~~n~~vl~~apCsVgI 612 (779)
+++++.+..-.. ..++.++....- .+..+.||+.|++.++|+|+||.|+. .+..+|++.+.|++++||+|-|
T Consensus 82 ~~~l~~~~~~~~--~~~~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~lGSv~~~vi~~~~cpVlv 156 (171)
T d2gm3a1 82 LHLLEFFVNKCH--EIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMT 156 (171)
T ss_dssp HHHHHHHHHHHH--HHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHH--hcCCceEEEEEe---CChHHHHHHHHhhcCCcEEEeccCCccccccCccCcHHHHHHhCCCCCEEE
Confidence 344444443332 234677765544 37799999999999999999999982 2457899999999999999988
Q ss_pred Ee
Q 004016 613 LY 614 (779)
Q Consensus 613 lv 614 (779)
+-
T Consensus 157 V~ 158 (171)
T d2gm3a1 157 IK 158 (171)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 6
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.00 E-value=1.5e-05 Score=72.44 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=82.6
Q ss_pred eEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeec-cCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHhcC
Q 004016 472 RILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEY-IGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQTNK 550 (779)
Q Consensus 472 riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel-~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 550 (779)
|||+|+...+.....++.+..+... .. ....+|.+.. ....... ........ ........++.++.++..... .
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la~~-~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~ 81 (147)
T d1tq8a_ 7 TVVVGTDGSDSSMRAVDRAAQIAGA-DA-KLIIASAYLPQHEDARAA-DILKDESY-KVTGTAPIYEILHDAKERAHN-A 81 (147)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTT-TS-EEEEEEECCC----------------------CCTHHHHHHHHHHHHHT-T
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhc-CC-CEEEEEEEeccccccccc-ccchhhhH-HHHHHHHHHHHHHHHHHHHHH-c
Confidence 7999999888888888888776643 22 3344444432 2222111 11100000 112334556777777766543 2
Q ss_pred cceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCC---ChhhHHHHHHhhhcCCCceEEE
Q 004016 551 AYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTE---PTLTKKVINNVLSMSPCSIGLL 613 (779)
Q Consensus 551 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~---~~~~~~~n~~vl~~apCsVgIl 613 (779)
+...++..... .+..+.|++.|++.++|+|++|.|+.. +..+|++.++|++++||+|-|.
T Consensus 82 ~~~~~~~~~~~---G~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l~Gs~~~~ll~~~~~pVlvV 144 (147)
T d1tq8a_ 82 GAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 144 (147)
T ss_dssp TCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEEEe---cChHHHHHHhhhccceeEEEecCCCCCcccccccccHHHHHHHhCCCCEEEE
Confidence 33345554443 478999999999999999999998732 4567889999999999998664
No 7
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=97.99 E-value=9.2e-06 Score=75.11 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=83.7
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCC-------------CC----ccchhhH-------HHHHH
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTM-------------SD----FIDEDRD-------QAMIN 684 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~-------------~~----~~e~~~d-------~~~i~ 684 (779)
||+++.=|.+.++.|+.+|..+|+..+.+|+++|++++.... .+ +.+++.. ++.++
T Consensus 5 ~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (160)
T d1mjha_ 5 KILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKME 84 (160)
T ss_dssp EEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998653210 00 0111111 23344
Q ss_pred HhhhhcCCCCCEEEEEEeecChHHHHHHHHhh--hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCC
Q 004016 685 DFRFVNLDSKNVEYVEEGVEEGFETLRIINAI--ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKS 762 (779)
Q Consensus 685 ~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~ 762 (779)
++..+.. ...+.+..++. .| +..+.|-+. ..+.||+|+|+++.. ++.+| -+|-..+-++.+ +
T Consensus 85 ~~~~~~~-~~gv~~~~~~~-~G-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~GS~a~~vl~~---s 148 (160)
T d1mjha_ 85 NIKKELE-DVGFKVKDIIV-VG-IPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK---S 148 (160)
T ss_dssp HHHHHHH-HTTCEEEEEEE-EE-CHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH---C
T ss_pred HHHHHHH-hcCCeEEEEEE-ec-cHHHHHhhhhhccccceEEeccCCCC------ccccc----ccCcHHHHHHhc---C
Confidence 4443321 23455544433 34 333444333 347999999987532 11111 378899999988 8
Q ss_pred ceeEEEEeeec
Q 004016 763 RASVLVIQQQA 773 (779)
Q Consensus 763 ~~SvLVvqq~~ 773 (779)
+++||||+.+.
T Consensus 149 ~~pVlvV~~~~ 159 (160)
T d1mjha_ 149 NKPVLVVKRKN 159 (160)
T ss_dssp CSCEEEECCCC
T ss_pred CCCEEEEcCCC
Confidence 89999998763
No 8
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}
Probab=97.89 E-value=2.9e-05 Score=69.75 Aligned_cols=122 Identities=15% Similarity=0.102 Sum_probs=78.3
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCC--C----------CCccchhhHHHHHHHhhhhcCCCCCE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPT--M----------SDFIDEDRDQAMINDFRFVNLDSKNV 696 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~--~----------~~~~e~~~d~~~i~~~~~~~~~~~~v 696 (779)
||+++.=|.+.++.|+++|.++|++.+.+++++|+++.... . .+..+++. ++.+++...+.... ..
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 81 (140)
T d1jmva_ 4 HILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTET-QKALLDLAESVDYP-IS 81 (140)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHH-HHHHHHHHHHSSSC-CC
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEEEeeecccccccccccchHHHHHHHHHHH-HHHHHHHHHhcCCc-eE
Confidence 89999999999999999999999999999999999865321 0 01111222 33444444443221 12
Q ss_pred EEEEEeecChHH-HHHHHHhhhcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEee
Q 004016 697 EYVEEGVEEGFE-TLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQ 771 (779)
Q Consensus 697 ~y~e~~v~~~~e-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq 771 (779)
.... ...+..+ +.+..++ .+.||+|+|+++.. |+ .||..-|.++.. ++++||||..
T Consensus 82 ~~~~-~~~~~~~~I~~~a~~--~~~dliV~G~~~~~------~~-------~lgs~~~~li~~---~~~pVliVp~ 138 (140)
T d1jmva_ 82 EKLS-GSGDLGQVLSDAIEQ--YDVDLLVTGHHQDF------WS-------KLMSSTRQVMNT---IKIDMLVVPL 138 (140)
T ss_dssp CEEE-EEECHHHHHHHHHHH--TTCCEEEEEECCCC------HH-------HHHHHHHHHHTT---CCSEEEEEEC
T ss_pred EEEE-EecCHHHHHHHhhhh--chhhEEEeccCCCC------CC-------CcccHHHHHHhc---cCCCEEEEec
Confidence 2211 1123332 2223332 37899999976531 11 288899999999 8899999974
No 9
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.80 E-value=2.1e-05 Score=71.38 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=78.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCC----------CCCccchhhHHHHHHHhhhhcCCCCCEEE
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPT----------MSDFIDEDRDQAMINDFRFVNLDSKNVEY 698 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~----------~~~~~e~~~d~~~i~~~~~~~~~~~~v~y 698 (779)
+|+++.-|.++.+.|+++|.++|+..+..+++.++.++... ...+.+++..++.++++++..... .+..
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 85 (147)
T d1tq8a_ 7 TVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNA-GAKN 85 (147)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTT-TCCE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcCCCEEEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHc-CCCc
Confidence 89999999999999999999999988887777665543110 111222333345566555543221 1222
Q ss_pred EEEeecChHHHHHHHHhh-hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcCCCCCceeEEEEee
Q 004016 699 VEEGVEEGFETLRIINAI-ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASDDFKSRASVLVIQQ 771 (779)
Q Consensus 699 ~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvqq 771 (779)
.+..+..|.-...+++.. ..+.||+|+|+++.. . + +..-+|-..+-++.. ++++||||..
T Consensus 86 ~~~~~~~G~~~~~i~~~a~~~~~dlIv~g~~~~~--~----~----~~~l~Gs~~~~ll~~---~~~pVlvV~~ 146 (147)
T d1tq8a_ 86 VEERPIVGAPVDALVNLADEEKADLLVVGNVGLS--T----I----AGRLLGSVPANVSRR---AKVDVLIVHT 146 (147)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCC--S----H----HHHHTBBHHHHHHHH---TTCEEEEECC
T ss_pred EEEEEEecChHHHHHHhhhccceeEEEecCCCCC--c----c----cccccccHHHHHHHh---CCCCEEEEec
Confidence 233444554333333332 247999999998632 1 1 112488888988888 8899999963
No 10
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}
Probab=97.65 E-value=7.9e-05 Score=66.42 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=35.7
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEe
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVV 665 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~ 665 (779)
+|+++.=+.++.+.|+++|.++|++.+++++++|++.
T Consensus 6 ~ILv~~D~S~~s~~al~~A~~~a~~~~a~l~llhv~~ 42 (138)
T d1q77a_ 6 VLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLE 42 (138)
T ss_dssp EEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhhhhccceEEEEEEcc
Confidence 8999999999999999999999999999999999986
No 11
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}
Probab=97.16 E-value=9.7e-05 Score=65.81 Aligned_cols=131 Identities=8% Similarity=0.007 Sum_probs=78.8
Q ss_pred ceEEEeecCCCChHHHHHHHHhcCCCCCCceEEEEEeeeccCCCCccccccccCCCCCCCCCCcchhHHHHHHHHHHh-c
Q 004016 471 LRILVCIPENDHVPTAINLLKASNPPQSHVGVYVMNLEEYIGRSMPVVIPHRLDKNPSSSKPAKIDPLLHAFFRYQQT-N 549 (779)
Q Consensus 471 ~riLv~i~~~~~v~~li~L~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~ 549 (779)
-+||+|+...++....++.+..++.. ....++++|++|................. ........++..+.++.+.+. .
T Consensus 5 k~ILv~~D~S~~s~~al~~A~~~a~~-~~a~l~llhv~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~l~~~~~~~~ 82 (138)
T d1q77a_ 5 KVLLVLTDAYSDCEKAITYAVNFSEK-LGAELDILAVLEDVYNLERANVTFGLPFP-PEIKEESKKRIERRLREVWEKLT 82 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT-TCCEEEEEEECHHHHHHHHHHHHHCCCCC-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHhhhh-ccceEEEEEEccCcccccccccccccchh-hhhhhhhhhhccccchhhccccc
Confidence 37999999999999999999888876 45689999999854322211111111000 000000112222222222211 1
Q ss_pred CcceEEEEEEEeccCCChHHHHHHHHhhcCccEEEeccccCCChhhHHHHHHhhhcCCCceEE
Q 004016 550 KAYVSVQCFTAVAPYASMHDDICSMAFQKATSLIIFPFLKTEPTLTKKVINNVLSMSPCSIGL 612 (779)
Q Consensus 550 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~~~~~n~~vl~~apCsVgI 612 (779)
.....++..... .+..+.|++.|++.++|+||+|.|+. + .-.+++..+.|++-|
T Consensus 83 ~~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIV~Gs~g~--~----~l~r~l~g~~~~~li 136 (138)
T d1q77a_ 83 GSTEIPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS--A----YLCKVIDGLNLASLI 136 (138)
T ss_dssp SCCCCCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG--G----GTHHHHHHSSSEEEE
T ss_pred ccceeEEEeeec---chhHHHHHHhhhhccCCEEEEecCCC--c----HHHHHhcCCCCCEEE
Confidence 223344443333 47899999999999999999999862 2 233677788888655
No 12
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=96.59 E-value=0.004 Score=57.38 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=71.5
Q ss_pred eEEEeecCC---------ccHHHHHHHHHHHhcCC---CeEEEEEEEEecCCCC---------C-------CccchhhHH
Q 004016 629 RVCVLFIGG---------ADDREALALGARMGRNP---SIHLTVTRFVVTNPTM---------S-------DFIDEDRDQ 680 (779)
Q Consensus 629 ~i~v~f~GG---------~ddreAL~~a~rma~~~---~v~ltv~~~~~~~~~~---------~-------~~~e~~~d~ 680 (779)
||+|..-|. ...+.|+++|...+.+. ...|+++|+....... . .+..++..+
T Consensus 3 ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (171)
T d2gm3a1 3 KVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGL 82 (171)
T ss_dssp EEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHH
T ss_pred EEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 566655553 24799999998887554 4579999987542210 0 112233345
Q ss_pred HHHHHhhhhcCCCCCEEEEEEeecChHHHHHHHHhh--hcCCcEEEEcccCCCCcccccccccccCCCccchhhhhhhcC
Q 004016 681 AMINDFRFVNLDSKNVEYVEEGVEEGFETLRIINAI--ANDFDLFLAGRRHEGCLHVLQGLGEWIEIEELGVVGDLLASD 758 (779)
Q Consensus 681 ~~i~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~ 758 (779)
+.+++++..... ..+.+...+ ..|. ..+.|-+. ..++||+|+|+++. +.+.. --+|-.-+.+...
T Consensus 83 ~~l~~~~~~~~~-~~~~~~~~v-~~G~-~~~~I~~~a~~~~~dlIV~G~~g~--~~~~~--------~~lGSv~~~vi~~ 149 (171)
T d2gm3a1 83 HLLEFFVNKCHE-IGVGCEAWI-KTGD-PKDVICQEVKRVRPDFLVVGSRGL--GRFQK--------VFVGTVSAFCVKH 149 (171)
T ss_dssp HHHHHHHHHHHH-HTCEEEEEE-EESC-HHHHHHHHHHHHCCSEEEEEECCC--C----------------CHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCceEEEE-EeCC-hHHHHHHHHhhcCCcEEEeccCCc--ccccc--------CccCcHHHHHHhC
Confidence 666666654321 123332232 2332 22333332 23799999998863 22111 1389999999999
Q ss_pred CCCCceeEEEEeee
Q 004016 759 DFKSRASVLVIQQQ 772 (779)
Q Consensus 759 d~~~~~SvLVvqq~ 772 (779)
++++||||.--
T Consensus 150 ---~~cpVlvV~~~ 160 (171)
T d2gm3a1 150 ---AECPVMTIKRN 160 (171)
T ss_dssp ---CSSCEEEEECC
T ss_pred ---CCCCEEEEeCC
Confidence 89999999754
No 13
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}
Probab=64.90 E-value=1.3 Score=42.99 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=55.0
Q ss_pred CCccHHHHHHHHHHHhcCC--CeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEE-Eee--cChHHHH
Q 004016 636 GGADDREALALGARMGRNP--SIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVE-EGV--EEGFETL 710 (779)
Q Consensus 636 GG~ddreAL~~a~rma~~~--~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e-~~v--~~~~e~~ 710 (779)
=.|.|+-||+.|.|+.++. ++++|++.+-++. . ++.+++-... .-++....+ .-. .|...|.
T Consensus 35 iNp~D~~AlE~Al~lke~~gg~~~Vtvvt~Gp~~----------a-~~~Lr~alAm--GaD~avli~d~~~~~~d~~~tA 101 (262)
T d3clsc1 35 LNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR----------V-DESLRKCLAK--GADRAVRVWDDAAEGSDAIVVG 101 (262)
T ss_dssp ECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCTT----------H-HHHHHHHHHT--TCSEEEEECCGGGTTCCHHHHH
T ss_pred cCcccHHHHHHHHHHHhcCCCceEEEEEeccchh----------H-HHHHHHHHhc--CCCeeEEEeccccccchHHHHH
Confidence 3689999999999999764 4578877765431 1 3344444432 222322222 111 1222343
Q ss_pred HHHHhhh--cCCcEEEEcccCC-CCc----ccccccccccCCCccchhhh
Q 004016 711 RIINAIA--NDFDLFLAGRRHE-GCL----HVLQGLGEWIEIEELGVVGD 753 (779)
Q Consensus 711 ~~i~~~~--~~~dL~iVGr~~~-~~s----~~~~gl~~w~e~~eLG~iGd 753 (779)
.++.... .+|||++.|+... .++ ++++++.+| |-+..+-+
T Consensus 102 ~~lA~~i~~~~~DLIl~G~~s~D~~~gqvg~~lAe~Lg~---P~vt~v~~ 148 (262)
T d3clsc1 102 RILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW---PHAAVVAD 148 (262)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC---CEEEEEEE
T ss_pred HHHHHHhhccCCcEEEEeeeccCCCcchHHHHHHHHcCC---ceEEEEEE
Confidence 3333322 3799999999853 222 344444444 55544433
No 14
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}
Probab=64.78 E-value=3.2 Score=39.54 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=25.5
Q ss_pred CccHHHHHHHHHHHhcC-CCeEEEEEEEEec
Q 004016 637 GADDREALALGARMGRN-PSIHLTVTRFVVT 666 (779)
Q Consensus 637 G~ddreAL~~a~rma~~-~~v~ltv~~~~~~ 666 (779)
+|.|+-||+.|.|+.++ .+.++|++-+-++
T Consensus 36 Np~D~~AlE~Al~lke~~~g~~Vtvls~Gp~ 66 (246)
T d1efpb_ 36 NPFDEIAVEEAIRLKEKGQAEEIIAVSIGVK 66 (246)
T ss_dssp CHHHHHHHHHHHHHHTTTSCSEEEEEEEESG
T ss_pred CccCHHHHHHHHHHhhcCCCeEEEEEEecCc
Confidence 68999999999999987 4569998888654
No 15
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.44 E-value=4 Score=38.94 Aligned_cols=105 Identities=12% Similarity=0.063 Sum_probs=52.7
Q ss_pred CccHHHHHHHHHHHhcC-CCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhcCCCCCEEEEEEe--e---cChHHHH
Q 004016 637 GADDREALALGARMGRN-PSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVNLDSKNVEYVEEG--V---EEGFETL 710 (779)
Q Consensus 637 G~ddreAL~~a~rma~~-~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~v~y~e~~--v---~~~~e~~ 710 (779)
+|.|+-||+.|.|+.++ .+..++++-.-++. . ++.+++-... ..++....+.- - .+...+.
T Consensus 36 Np~D~~AlE~Al~lke~~gg~~v~v~~~gp~~----------a-~~~lr~ala~--Gad~avli~~~~~~~~~~~~~~~a 102 (252)
T d1efvb_ 36 NPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQ----------C-QETIRTALAM--GADRGIHVEVPPAEAERLGPLQVA 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHTTSCSEEEEEEEESTT----------H-HHHHHHHHHH--TCSEEEEEECCHHHHTTCCHHHHH
T ss_pred CcccHHHHHHHHHHhhhcCCceEEEEEecchh----------H-HHHHHHHHhc--CCcceEEEEecccccccccHHHHH
Confidence 68999999999999975 55566655443331 1 2333333322 11222211110 0 0111223
Q ss_pred HHHHhhh--cCCcEEEEcccC-CCCccc-ccccccccCCCccchhhhh
Q 004016 711 RIINAIA--NDFDLFLAGRRH-EGCLHV-LQGLGEWIEIEELGVVGDL 754 (779)
Q Consensus 711 ~~i~~~~--~~~dL~iVGr~~-~~~s~~-~~gl~~w~e~~eLG~iGd~ 754 (779)
.++.... .+|||++-|+.. +.++-+ =..+.+|-..|-+..+-++
T Consensus 103 ~~~a~~~~~~~~DLIl~G~~s~D~~tgqVg~~lAe~Lg~P~vt~v~~i 150 (252)
T d1efvb_ 103 RVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQV 150 (252)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHhccCCCEEEEeccchhccCCcHHHHHHHhcCCCceeEEEEE
Confidence 3333332 379999999986 222222 2223344555665555443
No 16
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.97 E-value=24 Score=32.26 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=41.4
Q ss_pred eEEEeecCCccHHHHHHHHHHHh-cCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMG-RNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
+|++-+.||+|.--.|.+..++. ++++.+++++|+-..-. .+...+.+.+.++..+.
T Consensus 15 kvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r-----~~s~~~~~~~~~~~~~~ 72 (227)
T d1ni5a1 15 QILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-----ANADAWVTHCENVCQQW 72 (227)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-----SSHHHHHHHHHHHHHHT
T ss_pred cEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCC-----cchhhhHHHHHHHHhhc
Confidence 89999999999999999888886 45799999999853311 12233455666666654
No 17
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}
Probab=38.97 E-value=27 Score=31.73 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=41.9
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCe-EEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSI-HLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v-~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
+|+|-+.||+|.--.|.+..++.+..+. .++++++-..-. .+...|.+.++++.++.
T Consensus 26 kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r-----~~s~~~~~~~~~~~~~l 83 (216)
T d1wy5a1 26 RVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----ESAERDEEFCKEFAKER 83 (216)
T ss_dssp EEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----THHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCcHHHHHHHHHHHHHHHhcCCCcEEEEEeecccc-----cchhhhhhHHHHHHHhh
Confidence 8999999999999999999999876554 688888743211 12344567778877764
No 18
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=30.05 E-value=72 Score=26.92 Aligned_cols=51 Identities=6% Similarity=-0.102 Sum_probs=35.8
Q ss_pred hhhHHHHHHHhhhhcCCCCCEEEEEEeecChHHHHHHHHhhhcCCcEEEEccc
Q 004016 676 EDRDQAMINDFRFVNLDSKNVEYVEEGVEEGFETLRIINAIANDFDLFLAGRR 728 (779)
Q Consensus 676 ~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~ 728 (779)
++-...++..+.++.. .++.+...+=+|.+++.+++++..+++|++|.--+
T Consensus 25 ~dsN~~~l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~~~DivittGG 75 (149)
T d2nqra3 25 YDTNRLAVHLMLEQLG--CEVINLGIIRDDPHALRAAFIEADSQADVVISSGG 75 (149)
T ss_dssp ECCHHHHHHHHHHHTT--CEEEEEEEECSSHHHHHHHHHHHHHHCSEEEECSS
T ss_pred eecchHHHHhhhhhcc--eEEEEccccCChHHHHHHHHHhcccccCEEEEcCC
Confidence 3445667777766542 45666666668888888899888778999987443
No 19
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=28.14 E-value=22 Score=31.02 Aligned_cols=55 Identities=11% Similarity=-0.019 Sum_probs=37.0
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCccchhhHHHHHHHhhhhc
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVTNPTMSDFIDEDRDQAMINDFRFVN 690 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 690 (779)
+|++-|.||+|.--.|.++.+..++.+...-++.+.... +-.-..++++++.++.
T Consensus 28 ~i~va~SGGKDS~vlL~L~~~~~~~~~~~~~~v~~d~~~-------~~~et~~~~~~~~~~~ 82 (211)
T d1zuna1 28 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW-------KFQEMYRFRDQMVEEM 82 (211)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSC-------CCHHHHHHHHHHHHTT
T ss_pred CEEEEeCCcHHHHHHHHHHHhhcccccCCeeEEEecCcc-------cchhhHHHHHHHHHHh
Confidence 899999999999999999988877655555555543331 1111245666666654
No 20
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=25.89 E-value=25 Score=31.50 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=28.0
Q ss_pred eEEEeecCCccHHHHHHHHHHHhcCCCeEEEEEEEEec
Q 004016 629 RVCVLFIGGADDREALALGARMGRNPSIHLTVTRFVVT 666 (779)
Q Consensus 629 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltv~~~~~~ 666 (779)
++++.|.||.|.--++.++.+ .+.+++.+||...
T Consensus 6 Kvvv~~SGG~DS~vla~ll~k----~g~~v~av~~~~~ 39 (218)
T d2c5sa1 6 KVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHSP 39 (218)
T ss_dssp EEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEECT
T ss_pred EEEEEecCcHHHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 899999999999888877765 2688998998643
No 21
>d1gsoa2 c.30.1.1 (A:-2-103) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Escherichia coli [TaxId: 562]}
Probab=20.22 E-value=11 Score=30.51 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.8
Q ss_pred cChHHHHHHHHhhhcCCcEEEEcccCCCCccccccccccc
Q 004016 704 EEGFETLRIINAIANDFDLFLAGRRHEGCLHVLQGLGEWI 743 (779)
Q Consensus 704 ~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~ 743 (779)
+|-+++.+..++ ++.||+|||- +.|+..|+.|+-
T Consensus 53 ~d~~~i~~~a~~--~~idlvviGP----E~pL~~Gl~D~l 86 (105)
T d1gsoa2 53 TDIPALLDFAQN--EKIDLTIVGP----EAPLVKGVVDTF 86 (105)
T ss_dssp TCHHHHHHHHHH--TTCSEEEECS----HHHHHTTHHHHH
T ss_pred CcHHHHHHHHHH--hCcCEEEECc----HHHHHhHHHHHH
Confidence 456666666664 6899999995 579999999874
Done!