Query 004019
Match_columns 779
No_of_seqs 166 out of 237
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 16:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 1.2E-44 2.7E-49 410.0 63.5 586 152-779 3-600 (698)
2 KOG0161 Myosin class II heavy 99.8 2.2E-13 4.8E-18 171.2 73.7 445 304-778 1298-1820(1930)
3 PF01576 Myosin_tail_1: Myosin 99.5 6.5E-16 1.4E-20 187.3 0.0 447 305-778 241-762 (859)
4 KOG0161 Myosin class II heavy 99.4 7.2E-06 1.6E-10 104.8 76.7 383 208-643 951-1346(1930)
5 KOG0978 E3 ubiquitin ligase in 99.4 2.5E-06 5.4E-11 99.1 66.4 533 202-776 57-618 (698)
6 PF10174 Cast: RIM-binding pro 99.4 7.2E-07 1.6E-11 106.1 61.3 139 354-495 176-318 (775)
7 TIGR00606 rad50 rad50. This fa 99.3 3.4E-05 7.3E-10 99.5 81.0 38 447-484 695-732 (1311)
8 PRK02224 chromosome segregatio 99.3 2.3E-05 5E-10 97.5 67.8 48 597-644 508-555 (880)
9 PRK02224 chromosome segregatio 99.3 2.7E-05 5.9E-10 96.8 70.5 82 302-383 260-343 (880)
10 PRK03918 chromosome segregatio 99.2 7.5E-05 1.6E-09 92.9 65.5 29 237-265 202-230 (880)
11 PF10174 Cast: RIM-binding pro 99.2 5.8E-05 1.2E-09 90.2 71.1 300 205-540 106-423 (775)
12 TIGR02168 SMC_prok_B chromosom 99.2 0.00013 2.7E-09 93.5 75.7 18 159-176 173-190 (1179)
13 KOG4674 Uncharacterized conser 99.2 0.00012 2.6E-09 92.5 71.0 458 205-692 176-755 (1822)
14 KOG4674 Uncharacterized conser 99.1 0.00018 3.8E-09 91.1 76.6 160 592-751 1168-1341(1822)
15 TIGR02169 SMC_prok_A chromosom 99.0 0.00062 1.3E-08 87.2 77.5 52 45-99 191-242 (1164)
16 PRK03918 chromosome segregatio 99.0 0.00054 1.2E-08 85.3 68.1 20 321-340 231-250 (880)
17 COG1196 Smc Chromosome segrega 99.0 0.00071 1.5E-08 86.4 72.4 183 588-770 734-916 (1163)
18 TIGR00606 rad50 rad50. This fa 98.9 0.00084 1.8E-08 86.8 78.3 169 205-391 499-669 (1311)
19 PF07888 CALCOCO1: Calcium bin 98.8 0.0005 1.1E-08 78.4 45.2 172 602-776 280-455 (546)
20 KOG0996 Structural maintenance 98.6 0.0049 1.1E-07 74.6 65.2 126 302-438 386-511 (1293)
21 PF12128 DUF3584: Protein of u 98.5 0.014 3E-07 75.0 65.8 61 205-265 244-304 (1201)
22 KOG4643 Uncharacterized coiled 98.4 0.011 2.4E-07 70.4 57.2 126 600-729 417-556 (1195)
23 PF05701 WEMBL: Weak chloropla 98.3 0.018 4E-07 67.2 50.8 49 722-770 370-418 (522)
24 PF07888 CALCOCO1: Calcium bin 98.3 0.017 3.7E-07 66.2 41.9 55 321-387 143-197 (546)
25 PF05622 HOOK: HOOK protein; 98.3 1.2E-06 2.6E-11 105.8 7.3 27 34-61 59-86 (713)
26 KOG0996 Structural maintenance 98.3 0.03 6.4E-07 68.2 69.3 58 212-269 375-432 (1293)
27 PF01576 Myosin_tail_1: Myosin 98.2 2.6E-07 5.6E-12 113.0 0.0 157 589-755 375-535 (859)
28 PF05483 SCP-1: Synaptonemal c 98.2 0.031 6.7E-07 64.5 73.5 321 412-740 316-652 (786)
29 KOG0976 Rho/Rac1-interacting s 98.2 0.033 7.2E-07 64.8 53.3 385 357-775 102-513 (1265)
30 KOG0976 Rho/Rac1-interacting s 98.1 0.036 7.9E-07 64.5 47.5 356 363-744 36-406 (1265)
31 PF00261 Tropomyosin: Tropomyo 98.1 0.0043 9.3E-08 65.0 28.8 183 589-771 27-209 (237)
32 KOG4643 Uncharacterized coiled 98.1 0.059 1.3E-06 64.6 49.0 165 509-691 432-601 (1195)
33 COG1196 Smc Chromosome segrega 98.1 0.11 2.3E-06 66.9 79.7 18 57-74 170-187 (1163)
34 KOG4673 Transcription factor T 98.0 0.056 1.2E-06 62.2 49.0 404 301-739 347-761 (961)
35 PF08647 BRE1: BRE1 E3 ubiquit 98.0 0.00011 2.4E-09 65.7 12.7 95 631-725 1-95 (96)
36 PF00038 Filament: Intermediat 98.0 0.041 8.8E-07 60.0 36.2 11 512-522 141-151 (312)
37 PF05622 HOOK: HOOK protein; 98.0 1.4E-05 3.1E-10 96.6 9.0 165 321-494 200-379 (713)
38 PF00261 Tropomyosin: Tropomyo 97.9 0.018 4E-07 60.3 29.5 195 558-775 33-227 (237)
39 PRK04778 septation ring format 97.9 0.1 2.2E-06 61.8 45.3 131 625-755 288-428 (569)
40 KOG0994 Extracellular matrix g 97.9 0.13 2.8E-06 62.3 53.5 68 202-269 1227-1294(1758)
41 PF12128 DUF3584: Protein of u 97.9 0.2 4.4E-06 64.5 74.4 38 60-97 240-277 (1201)
42 PRK01156 chromosome segregatio 97.9 0.18 3.8E-06 63.2 59.0 28 511-538 421-448 (895)
43 PF15070 GOLGA2L5: Putative go 97.9 0.13 2.7E-06 61.0 39.7 78 558-637 157-234 (617)
44 PF05701 WEMBL: Weak chloropla 97.9 0.12 2.6E-06 60.6 61.3 153 593-745 318-477 (522)
45 KOG0971 Microtubule-associated 97.8 0.1 2.2E-06 61.8 35.5 86 618-703 338-438 (1243)
46 KOG0250 DNA repair protein RAD 97.8 0.14 2.9E-06 62.6 36.6 45 412-476 206-250 (1074)
47 KOG0933 Structural maintenance 97.7 0.22 4.7E-06 60.1 56.8 221 241-474 257-499 (1174)
48 KOG0971 Microtubule-associated 97.7 0.2 4.4E-06 59.5 43.8 93 679-775 508-600 (1243)
49 PF09755 DUF2046: Uncharacteri 97.7 0.11 2.4E-06 55.4 38.7 256 303-626 23-296 (310)
50 PRK01156 chromosome segregatio 97.7 0.35 7.6E-06 60.6 68.3 22 453-474 468-489 (895)
51 KOG0612 Rho-associated, coiled 97.6 0.37 8E-06 59.4 46.3 61 594-654 752-818 (1317)
52 PF05557 MAD: Mitotic checkpoi 97.6 4.7E-05 1E-09 92.4 4.2 276 456-762 259-534 (722)
53 KOG4673 Transcription factor T 97.5 0.33 7.1E-06 56.2 46.5 58 717-774 704-761 (961)
54 KOG0994 Extracellular matrix g 97.4 0.56 1.2E-05 57.2 49.7 153 301-470 1202-1375(1758)
55 KOG0977 Nuclear envelope prote 97.4 0.22 4.8E-06 57.4 30.4 108 203-347 88-195 (546)
56 PF09726 Macoilin: Transmembra 97.4 0.076 1.7E-06 63.7 28.0 114 588-708 542-655 (697)
57 KOG0977 Nuclear envelope prote 97.4 0.5 1.1E-05 54.6 38.1 26 413-438 106-131 (546)
58 PRK11637 AmiB activator; Provi 97.3 0.23 5E-06 56.8 29.4 35 590-624 88-122 (428)
59 PRK04863 mukB cell division pr 97.2 1.6 3.4E-05 57.1 66.3 43 303-345 438-480 (1486)
60 PF00038 Filament: Intermediat 97.1 0.56 1.2E-05 51.1 38.5 98 320-431 17-114 (312)
61 PRK04778 septation ring format 97.1 0.94 2E-05 53.7 49.4 71 301-391 65-135 (569)
62 PF05557 MAD: Mitotic checkpoi 97.1 0.0027 5.8E-08 77.2 12.2 133 239-387 189-324 (722)
63 KOG0963 Transcription factor/C 97.1 0.86 1.9E-05 52.8 39.2 77 582-658 187-267 (629)
64 PF13514 AAA_27: AAA domain 97.1 1.7 3.8E-05 55.7 72.2 137 301-444 453-649 (1111)
65 PF09726 Macoilin: Transmembra 97.0 0.73 1.6E-05 55.5 30.9 50 510-572 422-471 (697)
66 PF06160 EzrA: Septation ring 96.9 1.4 3E-05 52.2 45.3 23 620-642 314-336 (560)
67 KOG0612 Rho-associated, coiled 96.9 1.9 4.2E-05 53.5 46.3 87 592-692 694-780 (1317)
68 PF06160 EzrA: Septation ring 96.9 1.5 3.3E-05 51.9 47.6 38 354-391 94-131 (560)
69 KOG0018 Structural maintenance 96.9 2 4.3E-05 52.7 35.6 157 594-755 306-475 (1141)
70 PF15070 GOLGA2L5: Putative go 96.9 1.7 3.6E-05 51.8 46.8 156 241-436 35-190 (617)
71 PHA02562 46 endonuclease subun 96.8 1 2.3E-05 53.2 29.9 98 627-728 307-404 (562)
72 PHA02562 46 endonuclease subun 96.7 1.1 2.5E-05 52.8 29.1 6 522-527 176-181 (562)
73 KOG0963 Transcription factor/C 96.5 2.6 5.5E-05 49.0 39.5 106 666-775 240-353 (629)
74 COG1579 Zn-ribbon protein, pos 96.4 0.98 2.1E-05 47.0 22.4 115 624-739 36-153 (239)
75 PF13870 DUF4201: Domain of un 96.4 1 2.2E-05 45.0 22.0 160 595-760 3-174 (177)
76 KOG0933 Structural maintenance 96.3 4 8.7E-05 49.8 62.0 109 620-739 914-1023(1174)
77 KOG0995 Centromere-associated 96.3 3 6.6E-05 48.0 37.1 15 558-572 312-326 (581)
78 PF14662 CCDC155: Coiled-coil 96.2 1.5 3.2E-05 43.8 23.6 34 739-772 152-185 (193)
79 PF09755 DUF2046: Uncharacteri 96.2 2.3 4.9E-05 45.7 26.0 123 417-571 153-278 (310)
80 PF12718 Tropomyosin_1: Tropom 96.2 1.3 2.9E-05 42.6 20.6 28 715-742 78-105 (143)
81 PF05667 DUF812: Protein of un 96.0 5 0.00011 47.6 34.6 139 605-748 447-588 (594)
82 PF09730 BicD: Microtubule-ass 95.9 5.7 0.00012 47.9 62.4 127 594-747 586-712 (717)
83 KOG0250 DNA repair protein RAD 95.9 6.8 0.00015 48.6 61.6 146 302-475 318-464 (1074)
84 KOG1029 Endocytic adaptor prot 95.7 6.4 0.00014 46.7 33.2 84 578-661 431-514 (1118)
85 COG1340 Uncharacterized archae 95.6 3.8 8.3E-05 43.8 32.4 54 416-482 30-83 (294)
86 PF09730 BicD: Microtubule-ass 95.6 7.5 0.00016 46.9 43.6 98 675-775 359-456 (717)
87 PRK09039 hypothetical protein; 95.5 3.9 8.5E-05 45.3 23.7 67 554-622 39-105 (343)
88 PF12718 Tropomyosin_1: Tropom 95.5 2.6 5.6E-05 40.6 20.5 64 700-763 77-140 (143)
89 PRK09039 hypothetical protein; 95.4 2.7 5.8E-05 46.6 21.8 56 602-657 50-105 (343)
90 COG1340 Uncharacterized archae 95.0 6.1 0.00013 42.3 32.5 81 682-762 165-245 (294)
91 KOG0995 Centromere-associated 95.0 9.2 0.0002 44.2 45.6 129 353-495 212-349 (581)
92 PF09728 Taxilin: Myosin-like 94.4 9.2 0.0002 41.8 37.7 103 592-694 203-305 (309)
93 PF14662 CCDC155: Coiled-coil 94.3 6.3 0.00014 39.5 27.0 132 625-763 59-190 (193)
94 TIGR03185 DNA_S_dndD DNA sulfu 94.3 16 0.00035 44.1 39.2 31 414-444 263-293 (650)
95 PF13851 GAS: Growth-arrest sp 94.2 7.3 0.00016 39.8 22.9 102 592-693 63-168 (201)
96 KOG0946 ER-Golgi vesicle-tethe 94.1 18 0.00038 43.6 27.8 56 598-653 792-847 (970)
97 PF09304 Cortex-I_coil: Cortex 93.8 5 0.00011 36.3 15.5 99 673-772 7-106 (107)
98 COG4942 Membrane-bound metallo 93.7 15 0.00033 41.4 29.6 77 677-753 170-246 (420)
99 PF04849 HAP1_N: HAP1 N-termin 93.6 5.8 0.00013 42.8 18.4 49 620-668 207-255 (306)
100 KOG0946 ER-Golgi vesicle-tethe 93.4 23 0.0005 42.7 32.0 92 679-770 845-936 (970)
101 KOG0980 Actin-binding protein 93.3 25 0.00054 42.8 30.1 120 592-725 390-509 (980)
102 KOG1029 Endocytic adaptor prot 93.2 24 0.00051 42.2 29.8 147 600-753 439-585 (1118)
103 PF05667 DUF812: Protein of un 93.1 24 0.00052 42.1 31.1 40 689-728 491-530 (594)
104 KOG4593 Mitotic checkpoint pro 92.9 25 0.00055 41.7 49.4 49 516-571 244-292 (716)
105 KOG1853 LIS1-interacting prote 92.4 15 0.00033 38.1 19.4 116 625-754 65-180 (333)
106 TIGR03007 pepcterm_ChnLen poly 92.4 21 0.00045 41.6 22.7 31 241-271 160-190 (498)
107 PF10473 CENP-F_leu_zip: Leuci 92.4 11 0.00023 36.2 18.8 88 673-760 22-116 (140)
108 PF15619 Lebercilin: Ciliary p 92.4 14 0.0003 37.5 24.7 68 694-764 123-190 (194)
109 TIGR01005 eps_transp_fam exopo 92.0 31 0.00067 42.5 24.7 34 239-272 191-224 (754)
110 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.9 12 0.00025 35.6 18.1 36 623-658 95-130 (132)
111 PF09789 DUF2353: Uncharacteri 91.7 21 0.00046 38.9 19.7 150 620-776 73-227 (319)
112 KOG4593 Mitotic checkpoint pro 91.6 35 0.00076 40.6 60.0 59 210-268 108-166 (716)
113 KOG0980 Actin-binding protein 91.4 41 0.0009 41.0 29.4 54 686-739 463-516 (980)
114 KOG1003 Actin filament-coating 91.2 18 0.00039 36.3 25.9 36 738-773 165-200 (205)
115 KOG0804 Cytoplasmic Zn-finger 91.1 13 0.00029 41.7 17.5 86 673-758 366-455 (493)
116 TIGR01005 eps_transp_fam exopo 90.8 44 0.00095 41.2 24.2 34 742-775 373-406 (754)
117 KOG4807 F-actin binding protei 90.3 33 0.00071 37.8 26.9 255 43-371 296-564 (593)
118 PF09789 DUF2353: Uncharacteri 90.1 32 0.0007 37.5 23.0 136 590-734 92-227 (319)
119 PF05483 SCP-1: Synaptonemal c 90.0 48 0.001 39.4 65.4 123 301-439 191-322 (786)
120 KOG2129 Uncharacterized conser 89.8 37 0.0008 37.8 26.2 62 513-574 201-273 (552)
121 PLN02939 transferase, transfer 89.2 60 0.0013 40.8 22.9 168 320-494 155-340 (977)
122 TIGR03017 EpsF chain length de 89.2 46 0.001 38.0 25.4 33 240-272 169-201 (444)
123 KOG4360 Uncharacterized coiled 89.1 35 0.00077 39.0 18.9 23 588-610 163-185 (596)
124 PF08317 Spc7: Spc7 kinetochor 88.2 45 0.00098 36.7 29.3 79 678-759 212-290 (325)
125 PF04156 IncA: IncA protein; 88.2 30 0.00066 34.6 17.3 35 738-772 151-185 (191)
126 PF06818 Fez1: Fez1; InterPro 88.0 33 0.00072 34.9 22.6 176 560-747 9-200 (202)
127 PF15294 Leu_zip: Leucine zipp 87.9 41 0.0009 35.9 21.1 61 316-376 210-275 (278)
128 PF12325 TMF_TATA_bd: TATA ele 87.9 23 0.0005 33.0 14.6 43 353-395 15-57 (120)
129 PF15294 Leu_zip: Leucine zipp 86.8 48 0.001 35.5 22.6 25 446-470 252-276 (278)
130 COG4942 Membrane-bound metallo 86.6 62 0.0014 36.6 31.7 11 597-607 72-82 (420)
131 COG4372 Uncharacterized protei 86.5 57 0.0012 36.1 30.9 65 590-654 129-193 (499)
132 PF08317 Spc7: Spc7 kinetochor 86.4 56 0.0012 35.9 26.4 142 377-541 130-272 (325)
133 KOG1003 Actin filament-coating 86.1 40 0.00088 33.9 23.8 68 707-774 127-194 (205)
134 COG0419 SbcC ATPase involved i 86.0 1.1E+02 0.0023 38.7 67.6 20 152-171 145-164 (908)
135 PF14915 CCDC144C: CCDC144C pr 85.9 54 0.0012 35.2 36.2 37 458-494 3-47 (305)
136 PF10481 CENP-F_N: Cenp-F N-te 85.8 50 0.0011 34.9 16.6 60 205-271 65-124 (307)
137 PF05911 DUF869: Plant protein 85.7 99 0.0021 38.0 57.0 99 669-767 590-688 (769)
138 smart00787 Spc7 Spc7 kinetocho 84.9 64 0.0014 35.3 18.1 33 636-668 147-179 (312)
139 PF10168 Nup88: Nuclear pore c 84.5 35 0.00075 41.7 17.4 125 624-761 591-715 (717)
140 TIGR00634 recN DNA repair prot 84.2 98 0.0021 36.8 22.0 14 559-572 166-179 (563)
141 PF07111 HCR: Alpha helical co 84.2 1E+02 0.0022 36.9 53.6 176 595-774 384-586 (739)
142 KOG2129 Uncharacterized conser 84.1 77 0.0017 35.4 24.7 40 421-472 180-219 (552)
143 PF05911 DUF869: Plant protein 83.8 1.2E+02 0.0026 37.4 58.9 44 301-344 266-309 (769)
144 KOG3850 Predicted membrane pro 83.6 24 0.00052 38.9 13.6 107 317-470 263-369 (455)
145 PF05010 TACC: Transforming ac 83.6 57 0.0012 33.5 28.2 24 621-644 71-94 (207)
146 PF09304 Cortex-I_coil: Cortex 83.2 36 0.00077 30.9 14.9 96 680-775 7-102 (107)
147 KOG4360 Uncharacterized coiled 83.2 94 0.002 35.8 19.3 66 663-728 235-300 (596)
148 PF04849 HAP1_N: HAP1 N-termin 83.2 74 0.0016 34.5 29.9 135 620-771 168-302 (306)
149 KOG0804 Cytoplasmic Zn-finger 83.1 62 0.0014 36.6 16.9 101 673-776 352-452 (493)
150 COG3883 Uncharacterized protei 82.9 69 0.0015 34.0 27.2 59 679-737 152-210 (265)
151 PF09787 Golgin_A5: Golgin sub 82.8 1.1E+02 0.0023 36.1 31.2 31 457-490 105-135 (511)
152 TIGR03007 pepcterm_ChnLen poly 82.7 1E+02 0.0022 35.8 25.4 64 711-774 318-384 (498)
153 COG2433 Uncharacterized conser 82.1 76 0.0016 37.4 17.6 25 604-628 344-368 (652)
154 COG5185 HEC1 Protein involved 81.9 1E+02 0.0022 35.2 36.6 82 625-712 525-606 (622)
155 TIGR01843 type_I_hlyD type I s 81.8 96 0.0021 34.9 22.5 26 681-706 202-227 (423)
156 PF08614 ATG16: Autophagy prot 81.5 14 0.0003 37.5 10.7 67 683-749 110-176 (194)
157 PF11559 ADIP: Afadin- and alp 81.5 53 0.0011 31.7 18.4 100 651-753 49-148 (151)
158 PF14915 CCDC144C: CCDC144C pr 81.1 84 0.0018 33.8 32.8 49 588-636 60-108 (305)
159 PLN03188 kinesin-12 family pro 81.1 1.8E+02 0.0038 37.5 26.1 104 364-475 1068-1176(1320)
160 PF10146 zf-C4H2: Zinc finger- 80.9 76 0.0016 33.2 16.0 21 680-700 44-64 (230)
161 PF12795 MscS_porin: Mechanose 80.5 79 0.0017 33.1 23.6 180 580-773 34-220 (240)
162 PF04111 APG6: Autophagy prote 80.4 38 0.00083 37.1 14.4 29 734-762 102-130 (314)
163 PF10473 CENP-F_leu_zip: Leuci 79.6 60 0.0013 31.2 20.0 93 617-723 8-100 (140)
164 PF12329 TMF_DNA_bd: TATA elem 79.4 19 0.00041 30.6 9.1 65 653-717 4-68 (74)
165 PF14197 Cep57_CLD_2: Centroso 79.2 24 0.00052 29.6 9.5 64 205-268 3-66 (69)
166 PF08614 ATG16: Autophagy prot 78.0 25 0.00055 35.5 11.4 88 647-734 88-175 (194)
167 PF06008 Laminin_I: Laminin Do 78.0 99 0.0022 32.8 29.1 28 730-757 219-246 (264)
168 PF13863 DUF4200: Domain of un 78.0 59 0.0013 30.2 15.8 99 616-717 11-109 (126)
169 PF15619 Lebercilin: Ciliary p 77.9 85 0.0018 31.9 24.7 10 600-609 21-30 (194)
170 COG4372 Uncharacterized protei 77.8 1.2E+02 0.0026 33.7 31.1 154 581-738 127-287 (499)
171 PF15254 CCDC14: Coiled-coil d 77.7 1.7E+02 0.0038 35.5 24.9 42 620-661 442-483 (861)
172 PF06548 Kinesin-related: Kine 77.6 1.3E+02 0.0029 34.1 22.4 17 329-345 223-239 (488)
173 PF12329 TMF_DNA_bd: TATA elem 77.3 42 0.00091 28.5 10.6 66 703-768 5-70 (74)
174 PF07889 DUF1664: Protein of u 76.1 47 0.001 31.3 11.5 69 675-743 54-122 (126)
175 KOG0288 WD40 repeat protein Ti 76.0 1.4E+02 0.0031 33.5 17.2 58 596-653 11-68 (459)
176 PRK10361 DNA recombination pro 75.9 1.4E+02 0.0031 34.5 17.5 139 361-505 53-192 (475)
177 COG4477 EzrA Negative regulato 75.6 1.7E+02 0.0036 34.2 42.0 156 616-771 313-487 (570)
178 PF10498 IFT57: Intra-flagella 75.6 66 0.0014 35.9 14.6 69 483-551 264-332 (359)
179 PF09728 Taxilin: Myosin-like 74.8 1.4E+02 0.0029 32.8 37.4 60 705-764 218-277 (309)
180 PF09486 HrpB7: Bacterial type 74.6 86 0.0019 30.8 13.3 112 152-269 16-134 (158)
181 PF13870 DUF4201: Domain of un 74.3 96 0.0021 30.8 18.9 126 631-758 4-132 (177)
182 PRK10929 putative mechanosensi 74.3 2.7E+02 0.0058 35.9 39.6 45 647-691 265-309 (1109)
183 PF12325 TMF_TATA_bd: TATA ele 74.1 77 0.0017 29.6 14.6 26 592-617 24-49 (120)
184 COG5185 HEC1 Protein involved 74.0 1.7E+02 0.0036 33.5 30.1 55 412-476 263-317 (622)
185 PRK04863 mukB cell division pr 73.5 3.2E+02 0.007 36.5 67.1 193 302-498 444-665 (1486)
186 KOG2991 Splicing regulator [RN 73.2 1.3E+02 0.0027 31.7 18.8 123 306-437 117-260 (330)
187 PF04156 IncA: IncA protein; 72.8 1.1E+02 0.0023 30.7 16.9 22 743-764 163-184 (191)
188 KOG2751 Beclin-like protein [S 72.1 1.7E+02 0.0037 33.1 16.3 83 683-765 184-266 (447)
189 PF10146 zf-C4H2: Zinc finger- 71.5 1.4E+02 0.0029 31.3 16.3 52 694-745 37-88 (230)
190 TIGR02977 phageshock_pspA phag 70.7 1.3E+02 0.0029 30.9 22.1 22 598-619 52-73 (219)
191 PF05010 TACC: Transforming ac 70.6 1.3E+02 0.0029 30.8 27.4 30 512-541 22-51 (207)
192 KOG0964 Structural maintenance 70.1 2.9E+02 0.0063 34.6 62.1 61 205-265 437-497 (1200)
193 PF07926 TPR_MLP1_2: TPR/MLP1/ 70.0 1E+02 0.0022 29.2 18.3 34 714-747 95-128 (132)
194 PF09738 DUF2051: Double stran 69.7 1.7E+02 0.0038 31.8 16.5 47 301-347 78-124 (302)
195 PF09738 DUF2051: Double stran 69.5 1.2E+02 0.0026 33.0 14.4 22 323-344 221-242 (302)
196 PRK10698 phage shock protein P 69.4 1.5E+02 0.0032 30.8 22.5 26 594-619 48-73 (222)
197 TIGR03017 EpsF chain length de 69.2 2.1E+02 0.0046 32.6 22.9 33 743-775 340-372 (444)
198 PF05278 PEARLI-4: Arabidopsis 68.9 1.7E+02 0.0036 31.3 17.1 66 699-764 196-261 (269)
199 PF10498 IFT57: Intra-flagella 68.6 2E+02 0.0044 32.1 16.7 82 686-767 263-350 (359)
200 TIGR03185 DNA_S_dndD DNA sulfu 66.8 3E+02 0.0064 33.4 40.8 18 416-434 179-196 (650)
201 COG3883 Uncharacterized protei 66.6 1.8E+02 0.004 30.9 24.4 53 588-640 42-94 (265)
202 KOG2991 Splicing regulator [RN 66.2 1.8E+02 0.0038 30.6 21.5 43 708-750 262-304 (330)
203 COG2433 Uncharacterized conser 66.2 1.3E+02 0.0029 35.4 14.4 39 680-718 427-465 (652)
204 PF12795 MscS_porin: Mechanose 66.0 1.7E+02 0.0038 30.5 19.2 64 711-774 151-214 (240)
205 PF11559 ADIP: Afadin- and alp 65.7 1.3E+02 0.0028 28.9 17.6 61 679-739 56-116 (151)
206 PF15254 CCDC14: Coiled-coil d 65.3 3.2E+02 0.007 33.3 19.3 51 717-767 494-544 (861)
207 PF10186 Atg14: UV radiation r 64.7 2E+02 0.0043 30.6 19.0 14 625-638 33-46 (302)
208 PRK10884 SH3 domain-containing 64.5 1.3E+02 0.0028 30.9 12.8 15 679-693 97-111 (206)
209 KOG0018 Structural maintenance 64.3 3.9E+02 0.0084 33.9 52.7 31 409-439 405-435 (1141)
210 PF11932 DUF3450: Protein of u 63.6 2E+02 0.0043 30.3 17.5 51 669-719 50-100 (251)
211 PF05384 DegS: Sensor protein 62.2 1.6E+02 0.0036 28.9 19.5 51 700-750 102-152 (159)
212 PF08647 BRE1: BRE1 E3 ubiquit 62.1 1.2E+02 0.0025 27.1 13.2 85 690-774 4-88 (96)
213 PF13851 GAS: Growth-arrest sp 61.9 1.9E+02 0.0041 29.5 27.2 46 593-638 29-74 (201)
214 PF06785 UPF0242: Uncharacteri 60.7 2.6E+02 0.0056 30.6 16.0 119 316-472 94-212 (401)
215 PF07106 TBPIP: Tat binding pr 60.4 1E+02 0.0022 30.4 11.0 60 412-475 78-137 (169)
216 PF10212 TTKRSYEDQ: Predicted 60.2 2.5E+02 0.0054 32.8 15.2 56 707-765 459-514 (518)
217 PF00769 ERM: Ezrin/radixin/mo 60.1 2.3E+02 0.005 29.9 17.9 30 701-730 73-102 (246)
218 KOG1937 Uncharacterized conser 60.1 3.1E+02 0.0067 31.3 36.3 31 446-476 292-322 (521)
219 PF08172 CASP_C: CASP C termin 60.0 95 0.0021 32.8 11.2 29 241-269 5-33 (248)
220 PF06008 Laminin_I: Laminin Do 59.9 2.4E+02 0.0051 29.9 30.5 65 706-770 188-252 (264)
221 PF14197 Cep57_CLD_2: Centroso 59.6 1.1E+02 0.0023 25.8 9.9 39 687-725 3-41 (69)
222 PF07111 HCR: Alpha helical co 58.1 4.1E+02 0.0089 32.1 57.4 54 620-673 550-608 (739)
223 PF08581 Tup_N: Tup N-terminal 57.8 1.3E+02 0.0027 26.1 11.8 69 685-756 7-75 (79)
224 PF03962 Mnd1: Mnd1 family; I 56.9 1.8E+02 0.004 29.3 12.3 86 412-497 68-154 (188)
225 PF07106 TBPIP: Tat binding pr 56.6 1.3E+02 0.0028 29.6 11.1 92 202-320 74-165 (169)
226 COG2882 FliJ Flagellar biosynt 56.3 2E+02 0.0043 27.9 15.6 90 687-776 14-109 (148)
227 PF11180 DUF2968: Protein of u 56.3 2.3E+02 0.005 28.6 13.8 71 699-769 115-185 (192)
228 PF00769 ERM: Ezrin/radixin/mo 55.9 2.7E+02 0.0059 29.4 17.7 48 588-635 9-56 (246)
229 PF10186 Atg14: UV radiation r 55.9 2.8E+02 0.006 29.5 19.4 7 748-754 129-135 (302)
230 COG0419 SbcC ATPase involved i 55.4 5.3E+02 0.012 32.6 68.3 21 151-171 171-191 (908)
231 PF10481 CENP-F_N: Cenp-F N-te 55.4 2.9E+02 0.0062 29.5 16.2 128 614-761 5-132 (307)
232 PF06705 SF-assemblin: SF-asse 55.3 2.7E+02 0.0059 29.2 19.7 132 635-779 7-141 (247)
233 KOG1962 B-cell receptor-associ 55.0 1.7E+02 0.0037 30.2 11.6 60 708-767 149-208 (216)
234 PF15066 CAGE1: Cancer-associa 54.7 3.8E+02 0.0083 30.7 25.9 28 731-758 478-505 (527)
235 COG0216 PrfA Protein chain rel 54.0 1.6E+02 0.0034 32.4 11.6 48 329-376 8-55 (363)
236 COG4026 Uncharacterized protei 53.4 1.6E+02 0.0034 30.3 10.8 35 710-744 170-204 (290)
237 smart00787 Spc7 Spc7 kinetocho 53.4 3.4E+02 0.0074 29.7 28.2 78 679-759 208-285 (312)
238 PRK00409 recombination and DNA 52.7 4.4E+02 0.0096 32.8 17.0 21 79-99 37-57 (782)
239 PF04728 LPP: Lipoprotein leuc 52.6 93 0.002 25.0 7.2 28 241-268 23-50 (56)
240 PRK11281 hypothetical protein; 52.2 6.5E+02 0.014 32.7 36.2 46 647-692 285-330 (1113)
241 PF15397 DUF4618: Domain of un 52.0 3.2E+02 0.007 29.1 29.7 75 454-528 56-135 (258)
242 PF14988 DUF4515: Domain of un 51.6 2.9E+02 0.0062 28.4 24.6 60 451-524 37-96 (206)
243 PRK03947 prefoldin subunit alp 51.5 2.2E+02 0.0047 27.0 13.7 44 729-772 92-135 (140)
244 PF10458 Val_tRNA-synt_C: Valy 51.1 99 0.0021 25.4 7.7 34 321-354 4-37 (66)
245 PF10212 TTKRSYEDQ: Predicted 50.6 3.1E+02 0.0067 32.1 13.9 53 592-644 435-487 (518)
246 TIGR02231 conserved hypothetic 50.5 1.7E+02 0.0036 34.4 12.6 28 741-768 141-168 (525)
247 PF02403 Seryl_tRNA_N: Seryl-t 49.2 1.4E+02 0.003 27.0 9.2 71 701-771 27-100 (108)
248 TIGR02338 gimC_beta prefoldin, 48.8 2.1E+02 0.0046 26.0 12.2 92 677-769 12-105 (110)
249 PRK10869 recombination and rep 48.8 5.3E+02 0.011 30.6 22.8 14 559-572 162-175 (553)
250 PF06548 Kinesin-related: Kine 48.3 4.7E+02 0.01 29.9 30.5 53 560-612 409-469 (488)
251 COG5283 Phage-related tail pro 48.3 7.2E+02 0.016 32.1 25.1 77 644-724 93-169 (1213)
252 PF05335 DUF745: Protein of un 48.3 3.1E+02 0.0067 27.8 16.9 32 726-757 139-170 (188)
253 PRK03947 prefoldin subunit alp 47.5 2.5E+02 0.0055 26.5 14.4 47 721-767 91-137 (140)
254 PF06785 UPF0242: Uncharacteri 46.6 4.3E+02 0.0094 29.0 21.5 23 639-661 98-120 (401)
255 TIGR02449 conserved hypothetic 46.1 1.7E+02 0.0038 24.3 8.2 20 241-260 34-53 (65)
256 PF05266 DUF724: Protein of un 45.6 3.4E+02 0.0074 27.5 15.9 82 673-761 101-182 (190)
257 TIGR02231 conserved hypothetic 45.6 2.1E+02 0.0046 33.6 12.4 39 726-764 133-171 (525)
258 PF02183 HALZ: Homeobox associ 45.0 82 0.0018 24.1 5.7 33 355-387 6-38 (45)
259 PRK15422 septal ring assembly 43.7 2.1E+02 0.0046 24.6 9.3 62 591-666 11-72 (79)
260 PF15066 CAGE1: Cancer-associa 43.4 5.7E+02 0.012 29.4 27.5 27 625-651 410-436 (527)
261 cd00632 Prefoldin_beta Prefold 43.3 2.5E+02 0.0054 25.3 13.1 38 733-770 65-102 (105)
262 PF08826 DMPK_coil: DMPK coile 42.8 1.9E+02 0.0041 23.7 9.9 43 721-763 15-57 (61)
263 PRK09841 cryptic autophosphory 42.6 7.3E+02 0.016 30.5 17.1 50 588-637 264-315 (726)
264 TIGR02894 DNA_bind_RsfA transc 42.5 1.3E+02 0.0028 29.5 8.1 52 204-269 101-152 (161)
265 PF10205 KLRAQ: Predicted coil 42.5 2.6E+02 0.0057 25.3 10.7 59 208-273 13-71 (102)
266 PF07058 Myosin_HC-like: Myosi 42.2 4.8E+02 0.01 28.3 17.6 64 632-706 34-97 (351)
267 KOG1962 B-cell receptor-associ 41.9 3.3E+02 0.0072 28.1 11.3 60 558-623 131-190 (216)
268 PF10267 Tmemb_cc2: Predicted 41.5 5.8E+02 0.012 29.0 16.9 42 682-723 276-318 (395)
269 KOG0964 Structural maintenance 41.2 8.5E+02 0.018 30.8 65.5 25 412-436 445-469 (1200)
270 PRK11281 hypothetical protein; 41.1 9.3E+02 0.02 31.3 41.6 131 238-376 76-214 (1113)
271 TIGR02894 DNA_bind_RsfA transc 40.5 3.3E+02 0.0072 26.7 10.5 54 687-740 102-155 (161)
272 KOG4807 F-actin binding protei 40.3 5.7E+02 0.012 28.6 34.4 42 598-639 481-532 (593)
273 PRK09841 cryptic autophosphory 40.3 7.9E+02 0.017 30.2 18.1 33 742-774 367-399 (726)
274 PF09763 Sec3_C: Exocyst compl 40.1 6.8E+02 0.015 30.6 16.0 79 590-668 22-100 (701)
275 PF04880 NUDE_C: NUDE protein, 40.0 50 0.0011 32.7 4.9 52 705-761 2-53 (166)
276 cd00632 Prefoldin_beta Prefold 39.5 2.9E+02 0.0062 24.9 12.5 36 632-667 5-40 (105)
277 TIGR01000 bacteriocin_acc bact 39.3 6.5E+02 0.014 28.9 23.3 25 743-767 289-313 (457)
278 PF08826 DMPK_coil: DMPK coile 39.1 2.2E+02 0.0047 23.4 9.1 44 211-254 15-58 (61)
279 COG4026 Uncharacterized protei 38.8 4.6E+02 0.01 27.1 13.4 69 681-749 134-202 (290)
280 COG3074 Uncharacterized protei 38.7 2.3E+02 0.0051 23.7 8.1 70 415-490 6-76 (79)
281 PRK15396 murein lipoprotein; P 38.6 1.9E+02 0.0041 24.9 7.6 48 207-268 25-72 (78)
282 PF15290 Syntaphilin: Golgi-lo 37.8 3.7E+02 0.0079 28.8 11.0 23 724-746 124-146 (305)
283 PF04012 PspA_IM30: PspA/IM30 37.1 4.7E+02 0.01 26.7 22.0 14 732-745 166-179 (221)
284 PRK10698 phage shock protein P 37.0 5E+02 0.011 26.9 21.1 19 703-721 166-184 (222)
285 PF11932 DUF3450: Protein of u 36.9 5.2E+02 0.011 27.1 17.5 56 673-728 40-95 (251)
286 PF06156 DUF972: Protein of un 36.7 2.3E+02 0.0049 26.0 8.3 51 714-764 5-55 (107)
287 PRK13729 conjugal transfer pil 36.6 2E+02 0.0044 33.2 9.7 10 210-219 79-88 (475)
288 TIGR01069 mutS2 MutS2 family p 36.4 9.1E+02 0.02 30.0 16.1 20 80-99 38-57 (771)
289 PRK10722 hypothetical protein; 36.2 2.6E+02 0.0057 29.3 9.6 88 212-299 143-234 (247)
290 PF02183 HALZ: Homeobox associ 36.1 1.5E+02 0.0033 22.6 6.0 25 320-344 18-42 (45)
291 COG1842 PspA Phage shock prote 35.9 5.2E+02 0.011 26.9 20.0 36 720-755 102-137 (225)
292 PF07058 Myosin_HC-like: Myosi 35.8 4.8E+02 0.01 28.3 11.5 22 642-663 2-23 (351)
293 PF08172 CASP_C: CASP C termin 35.5 5.6E+02 0.012 27.1 15.0 24 241-264 12-35 (248)
294 COG5509 Uncharacterized small 35.0 72 0.0016 25.8 4.1 25 448-472 26-50 (65)
295 KOG4302 Microtubule-associated 34.9 9.1E+02 0.02 29.3 38.1 144 156-337 52-197 (660)
296 TIGR03545 conserved hypothetic 34.3 3.2E+02 0.007 32.5 11.4 90 301-394 165-256 (555)
297 PF07851 TMPIT: TMPIT-like pro 34.0 5.8E+02 0.013 28.2 12.4 55 682-736 4-58 (330)
298 PF06818 Fez1: Fez1; InterPro 33.7 5.4E+02 0.012 26.4 22.1 67 711-777 132-198 (202)
299 PRK09973 putative outer membra 33.5 2.1E+02 0.0045 25.1 7.1 46 207-266 24-69 (85)
300 KOG4603 TBP-1 interacting prot 33.4 4E+02 0.0088 26.4 9.7 66 673-738 68-137 (201)
301 PF04859 DUF641: Plant protein 33.4 4.3E+02 0.0093 25.1 10.5 42 228-269 80-121 (131)
302 PRK10246 exonuclease subunit S 33.3 1.2E+03 0.025 30.2 62.9 30 737-766 716-745 (1047)
303 KOG0249 LAR-interacting protei 33.2 9.8E+02 0.021 29.2 19.6 34 620-653 147-180 (916)
304 PF05276 SH3BP5: SH3 domain-bi 33.2 6E+02 0.013 26.7 28.7 71 701-771 154-224 (239)
305 PRK11519 tyrosine kinase; Prov 33.2 1E+03 0.022 29.3 17.3 35 588-622 264-298 (719)
306 KOG1899 LAR transmembrane tyro 33.1 9.2E+02 0.02 28.9 19.7 45 577-638 125-169 (861)
307 KOG3433 Protein involved in me 33.1 2.7E+02 0.0059 27.9 8.6 71 412-482 80-151 (203)
308 PF13942 Lipoprotein_20: YfhG 32.9 4.4E+02 0.0095 26.2 10.0 73 647-719 95-167 (179)
309 TIGR00414 serS seryl-tRNA synt 32.8 5E+02 0.011 29.7 12.3 71 703-773 30-104 (418)
310 PF15188 CCDC-167: Coiled-coil 32.6 3E+02 0.0065 24.1 8.0 64 242-332 5-68 (85)
311 KOG0962 DNA repair protein RAD 32.5 1.3E+03 0.028 30.4 71.6 149 587-737 874-1035(1294)
312 PF10805 DUF2730: Protein of u 32.4 3.6E+02 0.0078 24.5 9.0 63 206-268 34-98 (106)
313 PF07889 DUF1664: Protein of u 32.4 4.4E+02 0.0095 24.9 13.6 83 679-771 40-122 (126)
314 PF10458 Val_tRNA-synt_C: Valy 32.3 1.8E+02 0.004 23.9 6.5 59 412-472 3-64 (66)
315 PF05615 THOC7: Tho complex su 32.2 4.4E+02 0.0095 24.9 11.8 102 354-458 16-126 (139)
316 COG0497 RecN ATPase involved i 31.9 9.4E+02 0.02 28.6 23.0 36 704-739 336-371 (557)
317 KOG3091 Nuclear pore complex, 31.8 8.7E+02 0.019 28.2 14.4 8 600-607 378-385 (508)
318 PF13094 CENP-Q: CENP-Q, a CEN 31.8 3.5E+02 0.0076 26.3 9.6 61 678-738 23-83 (160)
319 PRK15178 Vi polysaccharide exp 31.7 8E+02 0.017 28.2 13.5 99 358-470 239-337 (434)
320 PF04728 LPP: Lipoprotein leuc 31.6 2.8E+02 0.006 22.4 7.6 46 209-254 5-50 (56)
321 PRK13729 conjugal transfer pil 31.1 1.5E+02 0.0033 34.1 7.7 47 589-635 74-120 (475)
322 PF05384 DegS: Sensor protein 31.0 5.2E+02 0.011 25.4 21.5 61 709-769 76-136 (159)
323 PF12777 MT: Microtubule-bindi 31.0 3.2E+02 0.0069 30.3 10.2 91 656-750 220-310 (344)
324 KOG4603 TBP-1 interacting prot 30.9 4.3E+02 0.0093 26.2 9.5 27 714-740 120-146 (201)
325 PF13094 CENP-Q: CENP-Q, a CEN 30.9 4.1E+02 0.0089 25.8 9.9 42 677-718 43-84 (160)
326 PF15188 CCDC-167: Coiled-coil 30.8 3.1E+02 0.0067 24.1 7.7 60 413-472 5-68 (85)
327 PF13514 AAA_27: AAA domain 30.8 1.3E+03 0.028 29.9 81.6 40 302-341 348-387 (1111)
328 PF09787 Golgin_A5: Golgin sub 30.7 9.4E+02 0.02 28.2 35.3 43 721-763 389-431 (511)
329 KOG4005 Transcription factor X 30.4 2.1E+02 0.0045 29.8 7.6 69 204-286 101-172 (292)
330 PF06409 NPIP: Nuclear pore co 30.2 4.9E+02 0.011 27.1 10.2 83 552-652 89-174 (265)
331 PF05335 DUF745: Protein of un 30.1 5.9E+02 0.013 25.7 17.6 83 691-773 90-172 (188)
332 PF15290 Syntaphilin: Golgi-lo 29.6 7.3E+02 0.016 26.6 13.8 32 579-610 70-101 (305)
333 PF09744 Jnk-SapK_ap_N: JNK_SA 29.6 5.5E+02 0.012 25.2 18.7 51 714-764 93-143 (158)
334 PF12004 DUF3498: Domain of un 29.5 18 0.00039 41.9 0.0 109 594-711 372-480 (495)
335 PLN02678 seryl-tRNA synthetase 29.3 7.5E+02 0.016 28.6 13.0 111 146-289 12-125 (448)
336 TIGR03752 conj_TIGR03752 integ 28.9 7E+02 0.015 28.9 12.3 18 593-610 61-78 (472)
337 TIGR03752 conj_TIGR03752 integ 28.9 6.9E+02 0.015 29.0 12.2 43 677-719 61-103 (472)
338 KOG1853 LIS1-interacting prote 28.6 7.2E+02 0.016 26.2 21.4 124 631-764 50-180 (333)
339 PF07851 TMPIT: TMPIT-like pro 28.3 8.3E+02 0.018 27.0 12.4 55 696-750 4-58 (330)
340 KOG2264 Exostosin EXT1L [Signa 28.3 4.4E+02 0.0095 31.0 10.4 52 713-764 96-147 (907)
341 COG1730 GIM5 Predicted prefold 27.7 5.7E+02 0.012 24.8 12.9 17 310-326 93-109 (145)
342 PF13166 AAA_13: AAA domain 27.7 1.2E+03 0.025 28.4 25.6 31 680-710 368-398 (712)
343 PF15456 Uds1: Up-regulated Du 27.6 5.2E+02 0.011 24.3 12.0 39 682-721 22-60 (124)
344 PF03915 AIP3: Actin interacti 27.5 9.8E+02 0.021 27.4 15.9 18 510-527 296-313 (424)
345 PRK13169 DNA replication intia 27.5 3.8E+02 0.0083 24.7 8.2 48 715-762 6-53 (110)
346 PRK14011 prefoldin subunit alp 27.4 97 0.0021 29.9 4.6 118 48-189 6-126 (144)
347 PF15035 Rootletin: Ciliary ro 27.4 6.5E+02 0.014 25.3 17.4 175 234-425 1-178 (182)
348 PF06120 Phage_HK97_TLTM: Tail 27.3 8.4E+02 0.018 26.6 17.5 22 625-646 47-68 (301)
349 PF07303 Occludin_ELL: Occludi 27.2 4.7E+02 0.01 23.6 10.7 87 614-701 10-99 (101)
350 PF06005 DUF904: Protein of un 26.9 3.9E+02 0.0084 22.6 11.4 55 685-739 7-61 (72)
351 COG0172 SerS Seryl-tRNA synthe 26.7 5.9E+02 0.013 29.2 11.3 76 206-281 35-114 (429)
352 KOG0999 Microtubule-associated 26.7 1.1E+03 0.024 27.8 57.6 195 241-438 42-254 (772)
353 PF04871 Uso1_p115_C: Uso1 / p 26.1 5.8E+02 0.013 24.3 14.9 26 694-719 82-107 (136)
354 PLN03188 kinesin-12 family pro 26.0 1.6E+03 0.035 29.4 34.8 55 559-613 1178-1240(1320)
355 PF10046 BLOC1_2: Biogenesis o 25.6 4.9E+02 0.011 23.3 12.6 32 682-713 66-97 (99)
356 PF07798 DUF1640: Protein of u 25.5 6.7E+02 0.014 24.8 17.2 139 313-473 18-157 (177)
357 KOG1937 Uncharacterized conser 24.9 1.1E+03 0.024 27.1 34.6 150 617-771 357-514 (521)
358 KOG3809 Microtubule-binding pr 24.6 1E+03 0.022 27.1 12.2 81 683-763 480-571 (583)
359 cd07661 BAR_ICA69 The Bin/Amph 24.6 7.7E+02 0.017 25.2 12.8 32 62-93 2-33 (204)
360 PF06005 DUF904: Protein of un 24.5 4.3E+02 0.0094 22.3 11.1 13 741-753 42-54 (72)
361 PF09403 FadA: Adhesion protei 24.3 3.3E+02 0.0072 25.7 7.4 22 302-323 29-50 (126)
362 PRK10803 tol-pal system protei 24.2 4.1E+02 0.0089 28.3 9.1 32 715-746 59-90 (263)
363 PF03245 Phage_lysis: Bacterio 23.9 6E+02 0.013 23.8 10.5 29 237-265 37-65 (125)
364 TIGR01000 bacteriocin_acc bact 23.7 1.1E+03 0.025 26.9 21.6 27 595-621 94-120 (457)
365 KOG2391 Vacuolar sorting prote 23.6 6.5E+02 0.014 27.8 10.3 74 597-715 213-286 (365)
366 PF13863 DUF4200: Domain of un 23.6 5.7E+02 0.012 23.4 16.4 26 743-768 79-104 (126)
367 PF06156 DUF972: Protein of un 23.3 4.2E+02 0.0091 24.2 7.7 38 616-653 5-42 (107)
368 PF10243 MIP-T3: Microtubule-b 23.0 28 0.0006 41.2 0.0 95 677-774 430-524 (539)
369 PF10393 Matrilin_ccoil: Trime 22.9 2.7E+02 0.0059 21.6 5.3 34 41-75 13-46 (47)
370 PF04582 Reo_sigmaC: Reovirus 22.8 1.7E+02 0.0036 32.2 5.8 125 625-770 27-151 (326)
371 KOG4809 Rab6 GTPase-interactin 22.8 1.3E+03 0.028 27.2 32.2 68 668-737 488-555 (654)
372 PRK11546 zraP zinc resistance 22.5 7.1E+02 0.015 24.1 9.9 46 595-640 58-103 (143)
373 PF04949 Transcrip_act: Transc 22.4 7.2E+02 0.016 24.1 14.0 41 731-771 84-124 (159)
374 PF05082 Rop-like: Rop-like; 22.4 4.1E+02 0.0089 22.2 6.6 58 682-739 2-59 (66)
375 PF00170 bZIP_1: bZIP transcri 22.4 4.2E+02 0.0091 21.4 8.8 38 597-648 25-62 (64)
376 PF07139 DUF1387: Protein of u 22.3 9.1E+02 0.02 26.3 11.1 67 447-523 186-253 (302)
377 PF04582 Reo_sigmaC: Reovirus 22.1 54 0.0012 35.9 2.0 95 679-773 32-126 (326)
378 cd00011 BAR_Arfaptin_like The 21.6 8.9E+02 0.019 24.8 13.2 36 62-97 2-37 (203)
379 PF05700 BCAS2: Breast carcino 21.5 9E+02 0.02 24.9 17.6 16 638-653 106-121 (221)
380 PF14073 Cep57_CLD: Centrosome 21.4 8.4E+02 0.018 24.5 22.2 53 718-777 121-173 (178)
381 COG4985 ABC-type phosphate tra 21.4 7.7E+02 0.017 25.7 9.7 14 149-162 159-172 (289)
382 PF10205 KLRAQ: Predicted coil 21.3 6.3E+02 0.014 23.0 11.0 62 694-755 10-71 (102)
383 KOG0249 LAR-interacting protei 21.3 1.6E+03 0.034 27.6 24.6 42 669-710 210-251 (916)
384 KOG3564 GTPase-activating prot 21.2 8.1E+02 0.018 28.4 10.7 74 632-719 27-100 (604)
385 PF04880 NUDE_C: NUDE protein, 21.1 1.4E+02 0.0031 29.5 4.5 42 302-347 2-43 (166)
386 PF05529 Bap31: B-cell recepto 20.9 7.8E+02 0.017 24.5 10.1 20 679-698 122-141 (192)
387 PRK05431 seryl-tRNA synthetase 20.8 7.3E+02 0.016 28.4 10.9 29 743-771 71-99 (425)
388 PF04899 MbeD_MobD: MbeD/MobD 20.8 5.2E+02 0.011 21.8 8.6 41 581-621 11-51 (70)
389 PRK00409 recombination and DNA 20.7 1.7E+03 0.036 27.8 17.2 12 206-217 150-161 (782)
390 PF15456 Uds1: Up-regulated Du 20.6 7.1E+02 0.015 23.4 11.9 36 679-715 26-61 (124)
391 PF03962 Mnd1: Mnd1 family; I 20.6 8.8E+02 0.019 24.4 12.1 26 676-701 70-95 (188)
392 PF04508 Pox_A_type_inc: Viral 20.4 73 0.0016 20.8 1.5 17 60-76 2-18 (23)
393 PRK05431 seryl-tRNA synthetase 20.3 7.8E+02 0.017 28.2 11.0 74 208-281 36-112 (425)
394 KOG2264 Exostosin EXT1L [Signa 20.3 8.5E+02 0.019 28.7 10.8 18 687-704 98-115 (907)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=409.99 Aligned_cols=586 Identities=26% Similarity=0.324 Sum_probs=516.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCchh--hhhhhchHHHHHHHHHHHHHHHHHhHHHHHH
Q 004019 152 MEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSK--QKASSNLQSEVKNLRLALMDLHLKHKSLTRE 229 (779)
Q Consensus 152 ~e~~L~~r~~~tk~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~l~~E~~~L~~~~~~L~~k~k~l~~e 229 (779)
++..|..|+.+++..++.++..+|.+....++++..+.+. .. ....+.|..++..||..++.+|.+|+.++.+
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~-----~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~ 77 (698)
T KOG0978|consen 3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNRV-----EEALTVLFDELAEENEKLQNLADHLQEKHATLSEQ 77 (698)
T ss_pred chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999999999888888777652 11 1266779999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCccccCcCCCCCCCCCCccchhhhhhhHHHH
Q 004019 230 LQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERD-VTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESV 308 (779)
Q Consensus 230 ~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~-~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 308 (779)
+..+.|+++...+++.++..++|+++|++++++++.+.+..-.. +..+.++||. ||| .++|.++.+...+..+...
T Consensus 78 ~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~--~~~-~~~~~~t~~~t~~~~l~~~ 154 (698)
T KOG0978|consen 78 ISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGN--GNG-SLSGTITVNSTELEELRDE 154 (698)
T ss_pred HHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--ccc-ccCcccccchhhhhhhccc
Confidence 99999999999999999999999999999999999888864322 2223333322 222 2334445556679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 309 HKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDN 386 (779)
Q Consensus 309 ~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~--~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~ 386 (779)
+++++.+++.|+.+|+.++..+..+..++..+++.++.. +++..|..|.+++ +...+.. ..
T Consensus 155 iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-----~NE~l~~----------~~-- 217 (698)
T KOG0978|consen 155 IEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-----YNEELQR----------KT-- 217 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hhhhccc----------cc--
Confidence 999999999999999999999999999999999999533 5555556666665 2211111 11
Q ss_pred HHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHH
Q 004019 387 LAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSA 465 (779)
Q Consensus 387 ~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~ 465 (779)
+ +..+++- ...+..++..++.++.+++++..+++....+.+. .+++.||++|++++++++..
T Consensus 218 -------~----~~~e~~~------~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~ 280 (698)
T KOG0978|consen 218 -------M----ESDEAIN------SKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKL 280 (698)
T ss_pred -------c----hhhhhhc------cchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1 4444432 4458999999999999999999999998888885 89999999999999999999
Q ss_pred HHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHhhcCc
Q 004019 466 MQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQ-AMVQDLTDSNLELKLILDMYRREST 544 (779)
Q Consensus 466 L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr-~q~~~l~e~~~elk~~ld~~~~~~~ 544 (779)
|.+..++|+++.+++.+++....++...+..+..+.+.+.+++....+....+. .-+..+....++.+.+++++.+++.
T Consensus 281 l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 360 (698)
T KOG0978|consen 281 LKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQ 360 (698)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999888888877788888888888888888777 6677788888899999999999999
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh---hHHHHHH
Q 004019 545 DSRDVLAARDLEYK-AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMR-QKLEAFKR---DMVSLSD 619 (779)
Q Consensus 545 d~rd~~~~~~~E~k-~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~-~~l~~~~r---~~~~l~~ 619 (779)
+.+|+........+ .+..++.++..+.+...+++++...+.+..+|+.+.....++.+++ +.+++..| ++..+++
T Consensus 361 k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e 440 (698)
T KOG0978|consen 361 KERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSE 440 (698)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Confidence 99999998888888 8899999999999988888899999999999999999999999999 88899999 8888999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie 699 (779)
.|..+.....+|.+||+++|+||++||++|++|++++++.|++|++||+|++++++.++.|+.++..+..++.++...++
T Consensus 441 ~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~ 520 (698)
T KOG0978|consen 441 ELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVD 520 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004019 700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER 779 (779)
Q Consensus 700 ~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~le~e~ 779 (779)
.+...+.+++++++.++.....+.+++..+.+.++.+++.+.++.+.+.+|+..++++++++.+++..+++....++.++
T Consensus 521 ~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 521 KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998763
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.82 E-value=2.2e-13 Score=171.20 Aligned_cols=445 Identities=21% Similarity=0.289 Sum_probs=292.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-ccccc-ChhHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 004019 304 DMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSS-SKAFLSVKNQLEKSKSEVFKYQAL-FEKL 380 (779)
Q Consensus 304 ~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~-S~~yk~L~~q~~~l~~~~~~~r~~-~e~L 380 (779)
.+...+++++.....=...=..+......+..++..|+..+... +.... -..-+.+..++..|+..++..... .+.+
T Consensus 1298 ~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eel 1377 (1930)
T KOG0161|consen 1298 ALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEEL 1377 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333334444444444455555444432 11110 012222333444455544433222 4444
Q ss_pred HHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc--------hhHHHHH
Q 004019 381 QVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR--------KEIIAEF 452 (779)
Q Consensus 381 q~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~--------~~~~~E~ 452 (779)
...+..+..++.+.. +..+. +...+..+|....+++.+-+++..+++...+.... ...+.+|
T Consensus 1378 ee~kk~l~~~lq~~q---e~~e~-------~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~ 1447 (1930)
T KOG0161|consen 1378 EELKKKLQQRLQELE---EQIEA-------ANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEW 1447 (1930)
T ss_pred HHHHHHHHHhHHHHH---HHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444443333 23332 26677888888888888888888888664322221 5777888
Q ss_pred HHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhh--------------------------------
Q 004019 453 RALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKE-------------------------------- 500 (779)
Q Consensus 453 k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e-------------------------------- 500 (779)
+...+-+..++.+.+.+.+. ..+++.++...+..+...+.....+
T Consensus 1448 k~~~e~l~~Eld~aq~e~r~---~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1448 KKKLEKLQAELDAAQRELRQ---LSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777766655 3333444444444443333222211
Q ss_pred ---hHHHhhhh-----hhHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHhhcCcChHHHH---HHHHHHHHH
Q 004019 501 ---CETLLASS-----ADQVAEIHKLQAMVQ----------DLTDSNLELKLILDMYRRESTDSRDVL---AARDLEYKA 559 (779)
Q Consensus 501 ---~~~l~~~~-----~~~~~eik~Lr~q~~----------~l~e~~~elk~~ld~~~~~~~d~rd~~---~~~~~E~k~ 559 (779)
+.+|...+ ..+..+.+.++.++. .+.+++.++ ++.++ ..++.+. ..+.+|.+.
T Consensus 1525 e~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~----E~~rk--~~~~~i~~~q~~Le~E~r~ 1598 (1930)
T KOG0161|consen 1525 EQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEI----EELRK--NLQRQLESLQAELEAETRS 1598 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHH--HHHHHHHHHHHhhhHHHHH
Confidence 11121111 123445555554433 244444444 33333 2233222 267799999
Q ss_pred HHHHHHHHhhhHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 004019 560 WAHVHSLKSSLDE--QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET 637 (779)
Q Consensus 560 ~~e~~~Lk~~L~e--~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~ 637 (779)
+.++..+|++|+. ..++..+.++|.+..++++.++...+.+.+|+..++++.+..+++.+++...+....++.+|++.
T Consensus 1599 k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~ee 1678 (1930)
T KOG0161|consen 1599 KSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEE 1678 (1930)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999976 55677788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 638 IGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ-DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCL 716 (779)
Q Consensus 638 l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~-~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~ 716 (779)
+....+....-+..+ ..++++ ..|++...... .++...+..++.+|..++.+++......+.+++..+...
T Consensus 1679 L~~~l~~~~Rarr~a---E~e~~E-----~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~ 1750 (1930)
T KOG0161|consen 1679 LREKLEALERARRQA---ELELEE-----LAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQ 1750 (1930)
T ss_pred HHHHHHHHHHHHHhh---HHHHHH-----HHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999998855444444 444445 44455554444 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHhhc
Q 004019 717 DQAQRLAEDRSQ---NSANLENTQKRLSDVRKSSVQVRGSLEESQS--------KVYKSRLTLMELQIELVKE 778 (779)
Q Consensus 717 ~~~~~leeel~~---~~~~le~~r~~~~e~e~~l~elr~~le~~e~--------~l~e~~~~l~E~~~~le~e 778 (779)
.++..+.+++.. +...+++.+.. ++..+++|+.+++.++. ++.-+..++.++..+|+.|
T Consensus 1751 ~~a~~~~~el~~Eq~~~~~le~~k~~---LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E 1820 (1930)
T KOG0161|consen 1751 ADAAKLAEELRKEQETSQKLERLKKS---LERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGE 1820 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHh
Confidence 999999999987 66667777776 99999999999998875 3666677777777777655
No 3
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.55 E-value=6.5e-16 Score=187.35 Aligned_cols=447 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc--cChhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 004019 305 MESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLS--SSKAFLSVKNQLEKSKSEVFK-YQALFEKLQ 381 (779)
Q Consensus 305 l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~--~S~~yk~L~~q~~~l~~~~~~-~r~~~e~Lq 381 (779)
|...+++++.....=...-..|...+..+..++..|+..+.+..-.. -...|..++.++.+|+..++. ....++.|.
T Consensus 241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelE 320 (859)
T PF01576_consen 241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELE 320 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHH
Confidence 33444444443333333444455555555566666666655431111 124777888888889888885 444477788
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc--------hhHHHHHH
Q 004019 382 VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR--------KEIIAEFR 453 (779)
Q Consensus 382 ~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~--------~~~~~E~k 453 (779)
..+..+...+.++. +..+. +...+..++....|+..+.+++..+++........ ...+.+|+
T Consensus 321 eaKKkL~~~L~el~---e~le~-------~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k 390 (859)
T PF01576_consen 321 EAKKKLERKLQELQ---EQLEE-------ANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWK 390 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88878877776665 33333 36788999999999999999999999885554432 57788888
Q ss_pred HHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHh-------hhHHHhhhh------------------
Q 004019 454 ALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVK-------ECETLLASS------------------ 508 (779)
Q Consensus 454 ~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~-------e~~~l~~~~------------------ 508 (779)
.-+..+..+...++.+++. ..++++.|+.++..+...+..... ++.++.+++
T Consensus 391 ~~~~~~~~e~d~~q~e~r~---~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE 467 (859)
T PF01576_consen 391 AKVEELQAERDAAQREARE---LETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLE 467 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHH
Confidence 8887777777777777665 455566666666555544432221 222222211
Q ss_pred ---------------hhHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHhh-cCcChHHHHHHHHHHHHHHHH
Q 004019 509 ---------------ADQVAEIHKLQAMVQ----------DLTDSNLELKLILDMYRR-ESTDSRDVLAARDLEYKAWAH 562 (779)
Q Consensus 509 ---------------~~~~~eik~Lr~q~~----------~l~e~~~elk~~ld~~~~-~~~d~rd~~~~~~~E~k~~~e 562 (779)
+....+-+.+|.++. .+.+++.++ +..++ ....-+.+-..+..|++.++.
T Consensus 468 ~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~----E~~Rr~~qr~l~~le~~LE~E~k~r~~ 543 (859)
T PF01576_consen 468 QEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEF----EETRRNHQRQLESLEAELEEERKERAE 543 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence 111223333333322 366666666 33332 122333444477889999999
Q ss_pred HHHHHhhhHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004019 563 VHSLKSSLDE--QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQ 640 (779)
Q Consensus 563 ~~~Lk~~L~e--~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~ 640 (779)
+...|+.|+. ..++..+.+++.+...+++.++.+..+|.+|+..++...+...++..++...+.....|.+|++.+..
T Consensus 544 ~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~ 623 (859)
T PF01576_consen 544 ALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELRE 623 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999976 45566788898888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 641 SYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQ 720 (779)
Q Consensus 641 A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~ 720 (779)
+.+.. ...+.. ...+++++...+.. ......++...+..++.++..+...++.....+..+.++.+....++.
T Consensus 624 ~~~~a--~r~rk~-aE~el~e~~~~~~~----l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~ 696 (859)
T PF01576_consen 624 ALEQA--ERARKQ-AESELDELQERLNE----LTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAA 696 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH--HHHHHH-HHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 99984 444444 66677775555544 445566889999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHhhc
Q 004019 721 RLAEDRSQ---NSANLENTQKRLSDVRKSSVQVRGSLEESQSKV--------YKSRLTLMELQIELVKE 778 (779)
Q Consensus 721 ~leeel~~---~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l--------~e~~~~l~E~~~~le~e 778 (779)
.+..++.. ....++..|.. ++.++++|+.+++.++... .-+..+|.++..+|+.|
T Consensus 697 ~l~~eL~~Eq~~~~~le~~k~~---LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E 762 (859)
T PF01576_consen 697 QLAEELRQEQDHNQHLEKEKKA---LERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESE 762 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHH
Confidence 99999988 66667777777 9999999999999887643 34555566666666554
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.41 E-value=7.2e-06 Score=104.83 Aligned_cols=383 Identities=17% Similarity=0.178 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCC
Q 004019 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGN 287 (779)
Q Consensus 208 E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~ 287 (779)
...+++.....+..+.+.+..++..+.+..++.-.+.+.++..+.++..++...+.+...+.--....
T Consensus 951 ~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kl------------ 1018 (1930)
T KOG0161|consen 951 TLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKL------------ 1018 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34455555555555555666666666666666666666666666666666666655554333110000
Q ss_pred CCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHH
Q 004019 288 KHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSK 367 (779)
Q Consensus 288 ~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~ 367 (779)
-..+++++..++.-+...........++.-++..+...+..++.....++ ..-+....+++.+.
T Consensus 1019 -----------e~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~-----~~l~kke~El~~l~ 1082 (1930)
T KOG0161|consen 1019 -----------EQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELD-----NQLKKKESELSQLQ 1082 (1930)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 00123333333332222222222222333333333333333222221110 12223334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-c-
Q 004019 368 SEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG-R- 445 (779)
Q Consensus 368 ~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~-~- 445 (779)
..++....++..++.....+..++.++. +..++- ....+.++.....+..+.++|.-+++....... +
T Consensus 1083 ~k~e~e~~~~~~l~k~i~eL~~~i~el~---e~le~e-------r~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~ 1152 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKELEARIKELE---EELEAE-------RASRAKAERQRRDLSEELEELKEELEEQGGTTAAQL 1152 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5666666666666666666666665554 323322 223355555555555566666555554311111 0
Q ss_pred ---hhHHHHHHHHHhccHHHHHHHHHHHHHhHHHh-HHHHHHHHhHHhHHHHHHh-------hHhhhHHHhhhhhhHHHH
Q 004019 446 ---KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA-LDIHILRADVLSLTNVLER-------KVKECETLLASSADQVAE 514 (779)
Q Consensus 446 ---~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~-~e~~~l~~e~~~l~~~~~~-------~~~e~~~l~~~~~~~~~e 514 (779)
..-..|+..|=..+..++...+.++..++... ..+..+...+..+...=.. ...++.++...+......
T Consensus 1153 e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~ 1232 (1930)
T KOG0161|consen 1153 ELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSE 1232 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666776677777766666665554221 1122222222222111100 001222222221111000
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHH
Q 004019 515 IHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLA 594 (779)
Q Consensus 515 ik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~ 594 (779)
-..+..--+.+.....+++..++.+.. .+..+..-..+++.++..+.+++.+.... +. .+.+...
T Consensus 1233 k~~~e~~~k~~E~~l~elq~k~~~~~~------~~~~l~~q~~~l~~E~~~l~~~lee~e~~--~~-------~~~r~~~ 1297 (1930)
T KOG0161|consen 1233 KKDLEKKDKKLEAQLSELQLKLDEQER------LRNDLTAKRSRLQNENEELSRQLEEAEAK--LS-------ALSRDKQ 1297 (1930)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHhhHhHHHHHH--HH-------HHHHHHH
Confidence 000000012223334445555555533 22234455667888888888877654431 22 2344566
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004019 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYD 643 (779)
Q Consensus 595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e 643 (779)
....+|.+++.+++.-.|....+...+.....+.+.|...+|.=..+..
T Consensus 1298 ~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~ 1346 (1930)
T KOG0161|consen 1298 ALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKN 1346 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888888888888888877765544444
No 5
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.5e-06 Score=99.07 Aligned_cols=533 Identities=16% Similarity=0.160 Sum_probs=293.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCcc
Q 004019 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV-TKGAFF 280 (779)
Q Consensus 202 ~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~-~~g~~~ 280 (779)
+..|+..+..|+.....++.+...+...+........-.+..+..+...++...-.....++.++.+-..... ..|+..
T Consensus 57 ~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~~~~~ 136 (698)
T KOG0978|consen 57 NEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGNGNGS 136 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Confidence 4557888888888888899999999999988888888999999999999999999999999999888644332 112222
Q ss_pred ccCcCC-CCC-CC--CCCccc-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhh
Q 004019 281 PVLNLG-NKH-VA--GDRVRD-------EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLY------NLQNT 343 (779)
Q Consensus 281 ~~~~~~-~~~-~~--~g~~~~-------~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~------~Lk~~ 343 (779)
+|+.++ +.+ .+ .+.... ...+++.+...+.+..........+|..+-........++. .+...
T Consensus 137 ~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l~~~ 216 (698)
T KOG0978|consen 137 LSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEELQRK 216 (698)
T ss_pred cCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhcccc
Confidence 222211 111 11 001011 01134556667777777777777777777777777777733 33333
Q ss_pred ccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhchHHHHhhhhhhhhhHHHhhHHHH
Q 004019 344 LKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE-TELNMKIDLVDVFRRSSAVTDSKIADLGIEI 422 (779)
Q Consensus 344 l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~-~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l 422 (779)
---.+-+.++..|..+.+-+.....+++..+.+++......+.+ ..+ .++. .... .+......+......+
T Consensus 217 ~~~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~-~~in~e~~---~L~S----sl~e~~~~l~~~~~~~ 288 (698)
T KOG0978|consen 217 TMESDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLF-SSINREMR---HLIS----SLQEHEKLLKEYEREL 288 (698)
T ss_pred cchhhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhh-hhHHHHHH---HHHH----HHHHHHHHHHHHHHHH
Confidence 21123333455688888888888888888888887777777662 222 3332 1000 0000011222222222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhH
Q 004019 423 QKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECE 502 (779)
Q Consensus 423 ~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~ 502 (779)
-....+...|+..+.-+....+ ........+....+..+..+.+--..+ +..+.+..+.+...+..+
T Consensus 289 k~t~~~~~~lr~~~~s~~~~~~--~~~~~~e~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----- 355 (698)
T KOG0978|consen 289 KDTESDNLKLRKQHSSAADSLE--SKSRDLESLLDKIQDLISQEAELSKKL------RSKLLESAKKLKILLREK----- 355 (698)
T ss_pred hcccchHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHH-----
Confidence 2333333444444433322222 122233333333333222222211100 000111011111111111
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHH
Q 004019 503 TLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTA 582 (779)
Q Consensus 503 ~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a 582 (779)
++-......|...+.++.. .++++++||+..++++++.++ .+++++++.+.+++-......+-+.-
T Consensus 356 ---~~e~~k~~di~~~k~el~~------~~~~~le~~k~~~ke~~~~~~-----~ka~~E~e~l~q~l~~~~k~e~~e~~ 421 (698)
T KOG0978|consen 356 ---DRESQKERDILVAKSELLK------TNELRLEMLKSLLKEQRDKLQ-----VKARAETESLLQRLKALDKEERSEIR 421 (698)
T ss_pred ---HHHhhhhHhHHHHHHHHHH------HHHHHHHHHhCCCHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112333444443322 278899999999999998766 78999999999998765543222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----
Q 004019 583 IEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQT---QNQQLLQ----- 654 (779)
Q Consensus 583 ~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqe---qn~rl~q----- 654 (779)
.-+...+.++++....+++.|+..+...+ .-+.....-..|+-.--+.+...+.++.+ .|..++.
T Consensus 422 k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k-------~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~ 494 (698)
T KOG0978|consen 422 KQALDDAERQIRQVEELSEELQKKEKNFK-------CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKA 494 (698)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12333677888889999999999888875 11222222222222222233333333322 2322222
Q ss_pred --HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 655 --QITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN 732 (779)
Q Consensus 655 --q~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~ 732 (779)
....+..-...|+..-.........+.-.+..++.+...+..........+..+...+......+..+...+..+...
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~ 574 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIE 574 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222444444566666666666666666666666666666666666677777777777777777
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 004019 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELV 776 (779)
Q Consensus 733 le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~le 776 (779)
++..-..+.++.....++...++....+...++..+..++..++
T Consensus 575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766666666666666666554
No 6
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.40 E-value=7.2e-07 Score=106.11 Aligned_cols=139 Identities=16% Similarity=0.232 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhc--hHHHHhhhhhhhhhHHHhhHHHHHHHHHHHH
Q 004019 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE-TELNMKID--LVDVFRRSSAVTDSKIADLGIEIQKQIDEKN 430 (779)
Q Consensus 354 ~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~-~E~~~~~E--~~e~~~~~~~~~~~~~~~lE~~l~rir~erd 430 (779)
........++..+.+..-++...++....+...++..+ .-+.+.-+ .-++.+.++...++++..+|.++..+..+..
T Consensus 176 ~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~ 255 (775)
T PF10174_consen 176 EEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIY 255 (775)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888888888888888888876665544 22221111 2234566667778999999999999888888
Q ss_pred HHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHH
Q 004019 431 RIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLE 495 (779)
Q Consensus 431 ~L~~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~ 495 (779)
.|...+..+.++-.. ...+...+.-.......|..+..++.+ .-+++..+.+++..+...+.
T Consensus 256 ~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~r---k~~E~~~~qt~l~~~~~~~~ 318 (775)
T PF10174_consen 256 RLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSR---KKSELEALQTRLETLEEQDS 318 (775)
T ss_pred HHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHH
Confidence 888777655553222 233444444444555667777777766 44455555555555444443
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=3.4e-05 Score=99.48 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHH
Q 004019 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILR 484 (779)
Q Consensus 447 ~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~ 484 (779)
..+.++...+.+++..+..+...+..++.....+..++
T Consensus 695 ~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~ 732 (1311)
T TIGR00606 695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA 732 (1311)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777778888888888888888877665544444443
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=99.28 E-value=2.3e-05 Score=97.46 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004019 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDD 644 (779)
Q Consensus 597 e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~ 644 (779)
..++..|+.+++...+.+....+.+.......+.|..+++.+...+++
T Consensus 508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~ 555 (880)
T PRK02224 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE 555 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555444433
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=99.28 E-value=2.7e-05 Score=96.81 Aligned_cols=82 Identities=9% Similarity=0.039 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc--ccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVK--CLSSSKAFLSVKNQLEKSKSEVFKYQALFEK 379 (779)
Q Consensus 302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~--~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~ 379 (779)
+..+...+.++......-..++..+......+..++..|...+.... +..-+..+..|......++..++..+..+..
T Consensus 260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~ 339 (880)
T PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444555555555555555555555555543221 1110123344445555555555555444444
Q ss_pred HHHH
Q 004019 380 LQVE 383 (779)
Q Consensus 380 Lq~e 383 (779)
+...
T Consensus 340 ~~~~ 343 (880)
T PRK02224 340 HNEE 343 (880)
T ss_pred HHHH
Confidence 4333
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=99.18 E-value=7.5e-05 Score=92.94 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 237 DAKDKAKLNRLKGELESAVKELEECNCKL 265 (779)
Q Consensus 237 ~~~~~~e~~~L~~~Le~~~~el~~~~kkl 265 (779)
++....++..+..++..+...+..+...+
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.17 E-value=5.8e-05 Score=90.22 Aligned_cols=300 Identities=16% Similarity=0.193 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCc
Q 004019 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLN 284 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~ 284 (779)
+.+ +...+..+..|++.+-.+..++..+++.+...+.++..+...|+.+..++.++--.| ...|+++.++
T Consensus 106 l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L--------~~~g~~~~~~- 175 (775)
T PF10174_consen 106 LQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML--------QSKGLSAEAE- 175 (775)
T ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhcCCcccch-
Confidence 344 777788888888888888889999877777777777777777777777777764444 1223322111
Q ss_pred CCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-------C--hh
Q 004019 285 LGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSS-------S--KA 355 (779)
Q Consensus 285 ~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~-------S--~~ 355 (779)
+ +...... .+.+++..+..+..+...+-.+...++.. +-+.+ ++.- |+ .... . .-
T Consensus 176 ----~---~~~~~~~-~~~~~e~~~~~le~lle~~e~~~~~~r~~---l~~~~---~~~~-~~-a~t~alq~~ie~Kd~k 239 (775)
T PF10174_consen 176 ----E---EDNEALR-RIREAEARIMRLESLLERKEKEHMEAREQ---LHRRL---QMER-DD-AETEALQTVIEEKDTK 239 (775)
T ss_pred ----h---hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHh---hcCC-Cc-hhHHHHHHHHHHHHHH
Confidence 0 0111111 35566666666665555555555444321 11111 1110 10 0000 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 004019 356 FLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMR 435 (779)
Q Consensus 356 yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e 435 (779)
+..|..-+..++.++..++..+....++|+.....+ +.. .+... -++.++..++-.|.|--.+...+..+
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~l-e~~---~s~~~------~mK~k~d~~~~eL~rk~~E~~~~qt~ 309 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQL-EVY---KSHSL------AMKSKMDRLKLELSRKKSELEALQTR 309 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH-HHH---HhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433344444443333 111 11111 12556777777777777777777777
Q ss_pred HHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHHH----hHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhh
Q 004019 436 LEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA----ALDIHILRADVLSLTNVLERKVKECETLLASSAD 510 (779)
Q Consensus 436 ~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~----~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~ 510 (779)
++.+.....- ...++=++.=+.+.+.+...|+++|.+++-. ...+.+....+..+..-......++.++.+.+..
T Consensus 310 l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~ 389 (775)
T PF10174_consen 310 LETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDK 389 (775)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7664433331 2333333334455556666666666543321 1122222222222222223333356666667777
Q ss_pred HHHHHHHHHHHHHh----hhhhHHHHHHHHHHHh
Q 004019 511 QVAEIHKLQAMVQD----LTDSNLELKLILDMYR 540 (779)
Q Consensus 511 ~~~eik~Lr~q~~~----l~e~~~elk~~ld~~~ 540 (779)
....|..|...+.. +.+++..+....+-+.
T Consensus 390 ~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 390 KERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777643 4566666655555554
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.16 E-value=0.00013 Score=93.50 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 004019 159 GIPRTKNIVSNILAAVDN 176 (779)
Q Consensus 159 r~~~tk~~l~~l~~~~~~ 176 (779)
+...|..-+.++-+.+..
T Consensus 173 ~~~~t~~nL~r~~d~l~e 190 (1179)
T TIGR02168 173 RRKETERKLERTRENLDR 190 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444433333
No 13
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.15 E-value=0.00012 Score=92.50 Aligned_cols=458 Identities=16% Similarity=0.168 Sum_probs=238.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cC
Q 004019 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAK----LNRLKGELESAVKELEECNCKLAALRAERDVT---KG 277 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e----~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~---~g 277 (779)
+.....+|-+..+.||...+-++.++...-|.+...+.+ +.+|+..|.++...|.....++.-++....-. .+
T Consensus 176 ~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie 255 (1822)
T KOG4674|consen 176 SQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIE 255 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777777777887 89999999999999999888887776321100 00
Q ss_pred CccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHH
Q 004019 278 AFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357 (779)
Q Consensus 278 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk 357 (779)
... ++-+...+ +... .-..+..++...+.+.+-=...++++..+...|.+.|..++.-+.|. +..|.
T Consensus 256 ~~~-----~~ls~~k~--t~~s-~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~-----~~~~~ 322 (1822)
T KOG4674|consen 256 SLN-----LELSKLKD--TAES-SEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA-----SERNK 322 (1822)
T ss_pred HHH-----HHHHHHHh--hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhH
Confidence 000 00000000 1111 14667888888999999999999999999999999999999888766 23444
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHH
Q 004019 358 SVKNQLEK----SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIE 433 (779)
Q Consensus 358 ~L~~q~~~----l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~ 433 (779)
...+++.- +...+..+-..+..|+.+...-....... .....+... +.+-+.+......|+.+++.|-.+.
T Consensus 323 e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~-~~~~~~s~~----~a~~s~~~~~~~sLtk~ys~~~~~q 397 (1822)
T KOG4674|consen 323 ENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSAT-GESSMVSEK----AALASSLIRPGSSLTKLYSKYSKLQ 397 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh-cccchhhhH----HHHHHhhcccchhHHHHHHHHHHHH
Confidence 44444333 33333344444445554443333322110 000111100 0012344455555555555555555
Q ss_pred HHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhH-----------HHhHHHHHHHHhHHhHHHHHHhhHh--
Q 004019 434 MRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYK-----------EAALDIHILRADVLSLTNVLERKVK-- 499 (779)
Q Consensus 434 ~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k-----------~~~~e~~~l~~e~~~l~~~~~~~~~-- 499 (779)
-+++...-+..+ .+++..+...+..+.-.+..-.++..+.. .....+..+.++++++...+...-+
T Consensus 398 qqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~ren 477 (1822)
T KOG4674|consen 398 QQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLEREN 477 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443333332 23333333333332222222222222211 1112222233333333333321111
Q ss_pred -----hhHHHhhh-------------------------------------------------------------------
Q 004019 500 -----ECETLLAS------------------------------------------------------------------- 507 (779)
Q Consensus 500 -----e~~~l~~~------------------------------------------------------------------- 507 (779)
.+.++..+
T Consensus 478 k~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~ 557 (1822)
T KOG4674|consen 478 KLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEA 557 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111100
Q ss_pred ----------------hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHH---------HHHHHHHHHHHHH
Q 004019 508 ----------------SADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDV---------LAARDLEYKAWAH 562 (779)
Q Consensus 508 ----------------~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~---------~~~~~~E~k~~~e 562 (779)
+....+.|..|...+.........+---+|||+.-..+..|. .+.......+...
T Consensus 558 ~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~ 637 (1822)
T KOG4674|consen 558 AEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKR 637 (1822)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHH
Confidence 011223333333333333333333444446663222222221 1111111111112
Q ss_pred HHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004019 563 VHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSY 642 (779)
Q Consensus 563 ~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~ 642 (779)
+..|...+.-.. + +....+..++.++..|+..+.+.+-+..+++..+.=++...++|...|+.+....
T Consensus 638 l~qLe~~le~~~-----~-------E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~ 705 (1822)
T KOG4674|consen 638 LRQLENELESYK-----K-------EKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEV 705 (1822)
T ss_pred HHHHHHHHHHHH-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222100 0 2223456677777777777777777777777777777888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 643 DDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQ 692 (779)
Q Consensus 643 e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~ 692 (779)
+.+.++|.-|...+...+.....+-.|-+.++..+..+..+...+..+-.
T Consensus 706 ~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ 755 (1822)
T KOG4674|consen 706 ETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKL 755 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887777666666666666655555555444433
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.11 E-value=0.00018 Score=91.06 Aligned_cols=160 Identities=16% Similarity=0.249 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHH----------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEI----------EAYLSEIETIG---QSYDDMQTQNQQLLQQITE 658 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~----------eaL~~Eie~l~---~A~e~lqeqn~rl~qq~~e 658 (779)
++..+..+...|+.+++...+.++++...|-...... ..++..+..+. ...-.|.+.|-+...-+.+
T Consensus 1168 k~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qE 1247 (1822)
T KOG4674|consen 1168 KLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQE 1247 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888888888877665554444 33333333333 4444566777777888888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 004019 659 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFC-LDQAQRLAEDRSQNSANLENTQ 737 (779)
Q Consensus 659 ~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l-~~~~~~leeel~~~~~~le~~r 737 (779)
+.+.-.++.++-+.....+..+..++.....++.-+...++.|+.+...+..+.+.. .....++..++..+...+....
T Consensus 1248 l~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke 1327 (1822)
T KOG4674|consen 1248 LRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKE 1327 (1822)
T ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888889999999999999999999999999999999999998883333 2334444445555555555566
Q ss_pred HHHHHHHHhHHHHH
Q 004019 738 KRLSDVRKSSVQVR 751 (779)
Q Consensus 738 ~~~~e~e~~l~elr 751 (779)
+.+.++...+..++
T Consensus 1328 ~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665555
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.98 E-value=0.00062 Score=87.25 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 004019 45 FQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESC 99 (779)
Q Consensus 45 fQn~aL~rql~~~kre~~~Le~ri~~Le~rq~~~d~~L~~v~~~W~QL~~~i~~l 99 (779)
-+-..|..|+...++... +-.++..++.....++ +......|..+...+..+
T Consensus 191 ~~~~~L~~q~~~l~~~~e-~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 242 (1164)
T TIGR02169 191 LIIDEKRQQLERLRRERE-KAERYQALLKEKREYE--GYELLKEKEALERQKEAI 242 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 344466666655544333 3334444444433322 233344555665555544
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=98.96 E-value=0.00054 Score=85.31 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004019 321 LELKGLHDGRIKVLQQLYNL 340 (779)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~L 340 (779)
..|+....+...+..++..+
T Consensus 231 ~~l~~~~~~~~~l~~~~~~l 250 (880)
T PRK03918 231 KELEELKEEIEELEKELESL 250 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.96 E-value=0.00071 Score=86.43 Aligned_cols=183 Identities=19% Similarity=0.279 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004019 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV 667 (779)
Q Consensus 588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~ 667 (779)
..+.++...+.++..+...++..+..+..++..+.........|..+++.+.......++....+..++.........+.
T Consensus 734 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1163)
T COG1196 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALE 813 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666666666666666666666666666666655444444444444444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004019 668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS 747 (779)
Q Consensus 668 ~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l 747 (779)
.+.-........+..++..+..++..+...+......+..++..+..+..++..+..+...+...+..++....+++..+
T Consensus 814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l 893 (1163)
T COG1196 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445666666666666666666666666667677777777777777777777777777777777777777777
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 004019 748 VQVRGSLEESQSKVYKSRLTLME 770 (779)
Q Consensus 748 ~elr~~le~~e~~l~e~~~~l~E 770 (779)
..+...+..+...+......+..
T Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 894 RELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666666665554
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=0.00084 Score=86.80 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccccCCccccC
Q 004019 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL-AALRAERDVTKGAFFPVL 283 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl-~~lk~e~~~~~g~~~~~~ 283 (779)
+..++...+..+..|..+...+..++..+ ...+..++++.-+..++.+....+.....+. +.+.. ..| ++|.
T Consensus 499 ~~~~i~~~~~~~~~le~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~----~~~-~~~~- 571 (1311)
T TIGR00606 499 LKKEVKSLQNEKADLDRKLRKLDQEMEQL-NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTS----LLG-YFPN- 571 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcC-CCCC-
Confidence 44455555555666655555555555554 3344445555555555555555555444333 11211 223 2211
Q ss_pred cCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cccccChhHHHHHHH
Q 004019 284 NLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQ 362 (779)
Q Consensus 284 ~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~S~~yk~L~~q 362 (779)
+ ..-...+..+..++.++..-.+..-.++..+......+..++..++..+... ..|.....+..+..-
T Consensus 572 ----------~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~ 640 (1311)
T TIGR00606 572 ----------K-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD 640 (1311)
T ss_pred ----------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 1 1123345667777777887777778888888888888888888887777644 334432234444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 363 LEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (779)
Q Consensus 363 ~~~l~~~~~~~r~~~e~Lq~er~~~~~~~ 391 (779)
+..++..++..+.....+.+...-|..-+
T Consensus 641 L~~~~~~l~~~~~~~~~~~~~~~~~~k~i 669 (1311)
T TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVYSQFI 669 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777766666666665555554
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.78 E-value=0.0005 Score=78.40 Aligned_cols=172 Identities=16% Similarity=0.193 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 004019 602 DMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALL 681 (779)
Q Consensus 602 ~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~ 681 (779)
.+...++..+..+..+.+++.++.++...|..|+-.++..-+. .-+.|++.--+.+.++.+|....+..........
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDr---t~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~ 356 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDR---TMAELHQARLEAAQLKLQLADASLELKEGRSQWA 356 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566777777788888888888776665433 4444554444455555555543333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ----NSANLENTQKRLSDVRKSSVQVRGSLEES 757 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~----~~~~le~~r~~~~e~e~~l~elr~~le~~ 757 (779)
.++..+...+......|..+...+..+++-++.=..+...++.++.. ....+-..++.+.|+...++-++...++.
T Consensus 357 qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql 436 (546)
T PF07888_consen 357 QEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQL 436 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555667777777777777777666677777776654 23467777888888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004019 758 QSKVYKSRLTLMELQIELV 776 (779)
Q Consensus 758 e~~l~e~~~~l~E~~~~le 776 (779)
...-.++...+-.+...|+
T Consensus 437 ~~EkQeL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 437 QEEKQELLEYIERLEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777776666665554
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=0.0049 Score=74.63 Aligned_cols=126 Identities=13% Similarity=0.142 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (779)
Q Consensus 302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq 381 (779)
+..+..++.++-.--..+.+.|..+.....+|..++....-+..+..-+.+ .....+.....+++++....++++
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe-----~~~~~i~~~~~ei~~L~~~~~~~~ 460 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPE-----KARIEIQKCQTEIEQLEELLEKEE 460 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCch-----hhHhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666667777777777777777777777766655433322 122223333344444444444444
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004019 382 VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (779)
Q Consensus 382 ~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~ 438 (779)
.+.+..+..+ .-. .+..-.. +...+..+..+...+.+.|++.+....++..
T Consensus 461 ~~l~e~~~~l-~~~--t~~~~~e---~~~~ekel~~~~~~~n~~~~e~~vaesel~~ 511 (1293)
T KOG0996|consen 461 RELDEILDSL-KQE--TEGIREE---IEKLEKELMPLLKQVNEARSELDVAESELDI 511 (1293)
T ss_pred HHHHHHHHHH-hhh--hhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333332 110 0111111 1112445555666666666666666666655
No 21
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.50 E-value=0.014 Score=74.99 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl 265 (779)
+.+++..|......+.+-+..+..=...+.........++..+...+.++..++.+....+
T Consensus 244 ~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (1201)
T PF12128_consen 244 VRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEI 304 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444443444444444445555555555555555555554444
No 22
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.43 E-value=0.011 Score=70.44 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hhHH
Q 004019 600 IADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDD--------------YNIK 665 (779)
Q Consensus 600 i~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd--------------~~~k 665 (779)
++.|.-.+........++...-+....|-+.|..|+++...+++.....|..+-+.+.-.+- .+.-
T Consensus 417 ~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~ 496 (1195)
T KOG4643|consen 417 HEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKS 496 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444555555666666666666666666543334333322222222 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 666 LVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQN 729 (779)
Q Consensus 666 l~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~ 729 (779)
|.. ....+..+...+..+..++++.....+...+++..++..+-.+...-..+-+.+..+
T Consensus 497 L~~----r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 497 LNN----RDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222 344455677777777788887777777777777777777666666666555555543
No 23
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.30 E-value=0.018 Score=67.24 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004019 722 LAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLME 770 (779)
Q Consensus 722 leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E 770 (779)
+...+..+....+.++..+..+...+..++...+.+...+...+.++.-
T Consensus 370 l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 370 LPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555444444444444433
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.28 E-value=0.017 Score=66.19 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (779)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~ 387 (779)
.+|++.+.++..|.+.+..|+... ..|+.++..+++++...+...+.|+.....+
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~------------~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEV------------EQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555442 3455555555555555555544444444333
No 25
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.27 E-value=1.2e-06 Score=105.79 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=19.3
Q ss_pred CchhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 004019 34 EEKKIDTAVLQFQNQ-KLVQKLETQKVEY 61 (779)
Q Consensus 34 ~~~~~d~~vl~fQn~-aL~rql~~~kre~ 61 (779)
.+..-+| ++.++|= +||+.|..|=++.
T Consensus 59 ~~~~~nw-~lr~~NLk~l~~~i~~yy~e~ 86 (713)
T PF05622_consen 59 EDVGDNW-RLRVSNLKKLLRNIKSYYQEE 86 (713)
T ss_dssp SGGGG-S-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3433456 7799996 9999999995543
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=0.03 Score=68.20 Aligned_cols=58 Identities=28% Similarity=0.391 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (779)
Q Consensus 212 L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk 269 (779)
++.....+..++..+..+++.+.....+.+...+.+...+..+..++++++++...+.
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e 432 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELE 432 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4444444555666667777777777777777888888888888888888877775554
No 27
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.21 E-value=2.6e-07 Score=113.01 Aligned_cols=157 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (779)
Q Consensus 589 ~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~ 668 (779)
.-++.+.++.++.+++..++...-..+.+.........+.-.|..+++.+....+.+...|..|... ++++...+..
T Consensus 375 LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~E---l~dl~~q~~~ 451 (859)
T PF01576_consen 375 LEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDE---LEDLTSQLDD 451 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---hccchhhhhh
Confidence 3345555666666666665544333333333333333333333344444434444444444444332 2332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 004019 669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAED----RSQNSANLENTQKRLSDVR 744 (779)
Q Consensus 669 E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leee----l~~~~~~le~~r~~~~e~e 744 (779)
.......|...+..|+.++..+...++.+...+...+....-+...+..+..+ +......++..|+. +.
T Consensus 452 ----~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~---~q 524 (859)
T PF01576_consen 452 ----AGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRN---HQ 524 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---hH
Confidence 33334455555555655555555555555555555555544444444443333 23334444555444 44
Q ss_pred HhHHHHHHhHH
Q 004019 745 KSSVQVRGSLE 755 (779)
Q Consensus 745 ~~l~elr~~le 755 (779)
..+..|...|+
T Consensus 525 r~l~~le~~LE 535 (859)
T PF01576_consen 525 RQLESLEAELE 535 (859)
T ss_dssp -----------
T ss_pred HHHHHHHhHHH
Confidence 44444444443
No 28
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.16 E-value=0.031 Score=64.49 Aligned_cols=321 Identities=13% Similarity=0.205 Sum_probs=182.4
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~ 491 (779)
+..+...-..+.++..+.+--.-++..++.... ..+.+|+..+.+|++- |..+..|++..-..+..+..++..-.
T Consensus 316 e~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s--~~v~e~qtti~~L~~l---L~~Eqqr~~~~ed~lk~l~~eLqkks 390 (786)
T PF05483_consen 316 EEDLQQATKTLIQLTEEKEAQMEELNKAKAQHS--FVVTELQTTICNLKEL---LTTEQQRLKKNEDQLKILTMELQKKS 390 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 344555566666777777666666655544443 4555666666555532 34444444433333333333333222
Q ss_pred HHH-------HhhHhhhHHHhhhhhhHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHH-HHHHHHHHH
Q 004019 492 NVL-------ERKVKECETLLASSADQV---AEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLA-ARDLEYKAW 560 (779)
Q Consensus 492 ~~~-------~~~~~e~~~l~~~~~~~~---~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~-~~~~E~k~~ 560 (779)
+-+ ..+.-++..|..-++... .+-+.+..-...++....++..+|-...+...|-..-+. ...++..-.
T Consensus 391 ~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ys 470 (786)
T PF05483_consen 391 SELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYS 470 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHH
Confidence 222 111113333433332221 222333333455777777777777766654444433332 667788888
Q ss_pred HHHHHHHhhhHHhcH--HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 004019 561 AHVHSLKSSLDEQSL--ELRVKTAIE---AEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635 (779)
Q Consensus 561 ~e~~~Lk~~L~e~~~--e~~vk~a~e---~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Ei 635 (779)
.+|..||..|....+ .......+. ......+.....-.++..++..+..+++.-..+-.++.+.+.....|+.|+
T Consensus 471 kQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnel 550 (786)
T PF05483_consen 471 KQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNEL 550 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999875322 111111111 111222223333456666777777777777777778888888888898888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 636 ETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFC 715 (779)
Q Consensus 636 e~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l 715 (779)
+.+. +++...+-.+.--+.+.++-...+..|-.+.......+...+..+..++..-...++.+.+.-..+-.+...-
T Consensus 551 es~~---eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE 627 (786)
T PF05483_consen 551 ESVK---EELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAE 627 (786)
T ss_pred HHHH---HHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8664 4555555566555666666666677777777777777777777777776666666666666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 716 LDQAQRLAEDRSQNSANLENTQKRL 740 (779)
Q Consensus 716 ~~~~~~leeel~~~~~~le~~r~~~ 740 (779)
+.+...++-.+..+...+++.++..
T Consensus 628 ~kq~~~~eikVn~L~~E~e~~kk~~ 652 (786)
T PF05483_consen 628 SKQSNVYEIKVNKLQEELENLKKKH 652 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5555555555555555566555553
No 29
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.16 E-value=0.033 Score=64.84 Aligned_cols=385 Identities=15% Similarity=0.193 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 004019 357 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL 436 (779)
Q Consensus 357 k~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~ 436 (779)
+.++.|+--|..-.-++-.+..+||..+..+....++.+.+.| + +.+++..+++.| -+-++++...+
T Consensus 102 k~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE--~--------~~srlh~le~eL---sAk~~eIf~~~ 168 (1265)
T KOG0976|consen 102 KHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIE--N--------LNSRLHKLEDEL---SAKAHDIFMIG 168 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--------hHHHHHHHHHHH---hhhhHHHHHHH
Confidence 3344444444444444455555556666555555544432221 1 134444444444 45555666666
Q ss_pred HHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhh--------
Q 004019 437 EEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLAS-------- 507 (779)
Q Consensus 437 e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~-------- 507 (779)
+...-.... .....++..+.+.-..++.++.--+.+|++..-+.+..--+++.....-.....+..-|+++
T Consensus 169 ~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~r 248 (1265)
T KOG0976|consen 169 EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLR 248 (1265)
T ss_pred HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh
Confidence 554444443 35556666776666666666666667777655443332111111110000000111111111
Q ss_pred --hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhH--------------
Q 004019 508 --SADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD-------------- 571 (779)
Q Consensus 508 --~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~-------------- 571 (779)
+..-.+..-.|..--+.+.++..+++..-+.+..+.++....+.. +..+++.+|+...
T Consensus 249 k~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~------~qeeLd~lkqt~t~a~gdseqatkylh 322 (1265)
T KOG0976|consen 249 KTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKE------LQEELDTLKQTRTRADGDSEQATKYLH 322 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH------HHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 111122222333333334444444444444444433333222221 1112222222211
Q ss_pred HhcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 572 EQSLEL--RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN 649 (779)
Q Consensus 572 e~~~e~--~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn 649 (779)
.-+++. .+....-+..++..+......-..+|.++-+++.-++..+.+.+.+.+.+...|..++....+-.+.+-.--
T Consensus 323 ~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 323 LENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000 011111122234445555566666777777777777777777777778888888887777755444433333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 650 QQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQN 729 (779)
Q Consensus 650 ~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~ 729 (779)
-++.+--...+...+.| ....+....+...+..+.-+....+......+-..+..+.+-..+..-++.+
T Consensus 403 f~~e~~~~dhe~~kneL-----------~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l 471 (1265)
T KOG0976|consen 403 FRLEQGKKDHEAAKNEL-----------QEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRAL 471 (1265)
T ss_pred hhhhhccchhHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 33333323333322222 2233333333333333333333333333333334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019 730 SANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775 (779)
Q Consensus 730 ~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l 775 (779)
.-.++.-|+ ++.++..|+...+.--+++..++..+.++.+.+
T Consensus 472 ~~sle~qrK----Veqe~emlKaen~rqakkiefmkEeiQethldy 513 (1265)
T KOG0976|consen 472 MDSLEKQRK----VEQEYEMLKAENERQAKKIEFMKEEIQETHLDY 513 (1265)
T ss_pred hhChhhhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332 344444444444444445555555555544443
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.14 E-value=0.036 Score=64.54 Aligned_cols=356 Identities=12% Similarity=0.114 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 004019 363 LEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASRE 442 (779)
Q Consensus 363 ~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~ 442 (779)
.++++..+-+...-+..|+++|+++...+-+--..++++-..+ .+....+.+.-+.|.-...++-....
T Consensus 36 ~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~-----sk~vstqetriyRrdv~llEddlk~~------ 104 (1265)
T KOG0976|consen 36 HEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQ-----SKKVSTQETRIYRRDVNLLEDDLKHH------ 104 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhh-----cchhhHHHHHHHHHHHHHhHHHHHHH------
Confidence 4445555555666677889999998777522212222222111 12222333333333333322222221
Q ss_pred CCchhHHHHHHHHHhccHHHHHHHHHHHHHh----HHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHH
Q 004019 443 PGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKL 518 (779)
Q Consensus 443 ~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~----k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~L 518 (779)
...+.+++.-+..+..+...||.-+.+| |+.-.++..++.+++.+...+..+..+|-..-+.+.....+|.++
T Consensus 105 ---~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~ 181 (1265)
T KOG0976|consen 105 ---ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEF 181 (1265)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHH
Confidence 2344555555555555555555555433 456677888888888888888777776543333333444455555
Q ss_pred HHHHHh----hhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHH
Q 004019 519 QAMVQD----LTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLA 594 (779)
Q Consensus 519 r~q~~~----l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~ 594 (779)
..|... +....+.+-+.+..|+..+.....++. .+.+.+.+.+.+-+-... +..--+......+.+.
T Consensus 182 ~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sl-------e~~~~q~~tq~vl~ev~Q--Lss~~q~ltp~rk~~s 252 (1265)
T KOG0976|consen 182 NMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSL-------ELHKDQENTQKVLKEVMQ--LSSQKQTLTPLRKTCS 252 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-------HHHHHHHHHHHHHHHHHH--HHHhHhhhhhHhhhhH
Confidence 555332 233333444555555544443333333 222333333322110000 0000011111112223
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004019 595 AAEAEIADMRQKLEAFKRDMVSLSD-------ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV 667 (779)
Q Consensus 595 ~~e~ei~~L~~~l~~~~r~~~~l~~-------~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~ 667 (779)
..++...+|+...+.....+.+|+. .+..++.-...+..|++++.+.-..... +-.+.-.-+...|.++-
T Consensus 253 ~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~g---dseqatkylh~enmklt 329 (1265)
T KOG0976|consen 253 MIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADG---DSEQATKYLHLENMKLT 329 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHH
Confidence 3344444444444444433444433 4444455555566666665543322110 01111111223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVR 744 (779)
Q Consensus 668 ~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e 744 (779)
.+++-..+.+...+...+.+...+..+...-+.....++.+.++.+.....+..+-..-..+.++++..+..+..++
T Consensus 330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55554555555555555555555555555555555555555555555555555555554445555555555444443
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.10 E-value=0.0043 Score=65.03 Aligned_cols=183 Identities=14% Similarity=0.223 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (779)
Q Consensus 589 ~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~ 668 (779)
+..++..+++++..|..++......++.....|.......+......+....++..|......--..+..++.....+..
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~ 106 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKR 106 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666665555555555555555544444444444444433333222222222222211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004019 669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV 748 (779)
Q Consensus 669 E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~ 748 (779)
---.+.+.|....+....++..+..+...++.....+..++..+..+..++..++.-....+...+.+..++..+...+.
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 11113444444444444444444444444444444444444444444444444444333333333444444444444444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 004019 749 QVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 749 elr~~le~~e~~l~e~~~~l~E~ 771 (779)
+.-.+.+.++..+..++..+..+
T Consensus 187 eaE~Rae~aE~~v~~Le~~id~l 209 (237)
T PF00261_consen 187 EAENRAEFAERRVKKLEKEIDRL 209 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 32
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.08 E-value=0.059 Score=64.58 Aligned_cols=165 Identities=20% Similarity=0.206 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHH----HHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHH
Q 004019 509 ADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLA----ARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIE 584 (779)
Q Consensus 509 ~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~----~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e 584 (779)
+...+.-|.|..+..++.+...-....++.+......-+-++. +.+--..+++++..+++.|.....++ ..
T Consensus 432 ~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~el--sr--- 506 (1195)
T KOG4643|consen 432 AELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLEL--SR--- 506 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---
Confidence 4445556667777666666655555555555332222211111 11111123333344444443222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhh
Q 004019 585 AEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE-RDDYN 663 (779)
Q Consensus 585 ~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e-~dd~~ 663 (779)
....+.....++.....++......+..|...+.+-+.|..-|+.+|-.+..- .||+-++-+... ++-++
T Consensus 507 ----l~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-----~qn~~~LEq~~n~lE~~~ 577 (1195)
T KOG4643|consen 507 ----LHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-----SQNGALLEQNNNDLELIH 577 (1195)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----hHHHHHHHHhhhHHHHHH
Confidence 11123445556666677777777777888888899999999999999888653 355554444333 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 664 IKLVLEGVRARQLQDALLMDKHMMESEI 691 (779)
Q Consensus 664 ~kl~~E~~k~~q~~~~l~~ek~~le~el 691 (779)
.++.- .-..+.+++..++.++.++
T Consensus 578 ~elkk----~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 578 NELKK----YIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 32222 3334446777777777665
No 33
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.06 E-value=0.11 Score=66.93 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004019 57 QKVEYSALENKFAQLKER 74 (779)
Q Consensus 57 ~kre~~~Le~ri~~Le~r 74 (779)
|+......+.+++.....
T Consensus 170 y~~r~~ea~~~L~~~~~n 187 (1163)
T COG1196 170 YKERKEEAERKLERTEEN 187 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 34
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.02 E-value=0.056 Score=62.18 Aligned_cols=404 Identities=16% Similarity=0.142 Sum_probs=187.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL 380 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~L 380 (779)
.++.+...++.+-.....|-.+|-.....+.-|..+..++..+ +..+-.++.....|...|.+--++++ ..+..+
T Consensus 347 eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e--~~~~k~~~s~~ssl~~e~~QRva~lE---kKvqa~ 421 (961)
T KOG4673|consen 347 ELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTE--DLKRKSNESEVSSLREEYHQRVATLE---KKVQAL 421 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHhhcccccchHHHHHHHHHHHH---HHHHHH
Confidence 4666777777777777788888776666666555543333322 22111222233345555444333333 233345
Q ss_pred HHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhcc
Q 004019 381 QVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSF 459 (779)
Q Consensus 381 q~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~-~~~~~E~k~l~~sl 459 (779)
-.|||++++.++.+. .+++-+. ....+....-.+..++.+=+.|--++-.-..-.-+ ..-+.+-..|+..+
T Consensus 422 ~kERDalr~e~kslk-----~ela~~l---~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ 493 (961)
T KOG4673|consen 422 TKERDALRREQKSLK-----KELAAAL---LKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKK 493 (961)
T ss_pred HHhHHHHHHHHHHHH-----HHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 788999988875553 2222221 13455566666667777666665554221111111 12222333455556
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 004019 460 PEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMY 539 (779)
Q Consensus 460 ~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~ 539 (779)
-+.|.-|+++..++|-...+ +.+++- .+ .+.|..+......+..+...+++.+..+......++..+|-.
T Consensus 494 ge~i~~L~sE~~~lk~il~~----Kee~Ek---~~---~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a 563 (961)
T KOG4673|consen 494 GELITKLQSEENKLKSILRD----KEETEK---LL---QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEA 563 (961)
T ss_pred hhHHHHHHHHHHHHHHHhhh----HHHHHH---HH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 66777777777666532110 111110 00 011222222223333444444444444444444444444444
Q ss_pred hh-cCcChHHHH-HHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004019 540 RR-ESTDSRDVL-AARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSL 617 (779)
Q Consensus 540 ~~-~~~d~rd~~-~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l 617 (779)
++ .-+..|-.- +.++.+--+-.+|..|+..|.... -.+-++=.-.-.||.+|+..|..+.+..+++
T Consensus 564 ~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E------------q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 564 RSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE------------QQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred hhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 001111110 111222223333555555443211 1222233445679999999999999999988
Q ss_pred HHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-H---HHHHHHHHHHHHHHHHHHHHH
Q 004019 618 SDALKSKN----EEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV-L---EGVRARQLQDALLMDKHMMES 689 (779)
Q Consensus 618 ~~~l~~~~----~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~-~---E~~k~~q~~~~l~~ek~~le~ 689 (779)
--++.+.. ...++|..=+..-..||+....+-...+..-.-+-..+.... - |-+..+-.+-+..-..-.|..
T Consensus 632 ~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllra 711 (961)
T KOG4673|consen 632 IQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRA 711 (961)
T ss_pred HhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHH
Confidence 88776655 455666666666667777743322222211000000000000 0 000000000011122223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 690 EIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 690 el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
+-..+...++.-.++.......+..++..+..++.....+.+.....|++
T Consensus 712 E~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 712 EQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555444444443
No 35
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=98.01 E-value=0.00011 Score=65.71 Aligned_cols=95 Identities=15% Similarity=0.259 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 631 YLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIEN 710 (779)
Q Consensus 631 L~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee 710 (779)
|++||..+.+||++...+...++..+..+++...++..|+.|+++.||++++.++.+..++..++..+......+..+.+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004019 711 QLRFCLDQAQRLAED 725 (779)
Q Consensus 711 ~lk~l~~~~~~leee 725 (779)
-...+...+..++++
T Consensus 81 ~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 81 TEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHhhcc
Confidence 888888777777654
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.00 E-value=0.041 Score=60.03 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 004019 512 VAEIHKLQAMV 522 (779)
Q Consensus 512 ~~eik~Lr~q~ 522 (779)
..+|+.|+.++
T Consensus 141 eeEi~~L~~~~ 151 (312)
T PF00038_consen 141 EEEIEELREQI 151 (312)
T ss_dssp HHHHHTTSTT-
T ss_pred hhhhhhhhhcc
Confidence 34555555544
No 37
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.00 E-value=1.4e-05 Score=96.63 Aligned_cols=165 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcc-ccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004019 321 LELKGLHDGRIKVLQQLYNLQNTLKSVK-CLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID 399 (779)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~-~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E 399 (779)
.++..|+.++..|..++..|+..+...+ .+. .+...+..++.++++.+++++.++.++...++.++..+.++. .+
T Consensus 200 ~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le--~e 275 (713)
T PF05622_consen 200 KQISDLQEEKESLQSENEELQERLSQLEGSSE--EPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELE--KE 275 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 3455677777888888877777765443 121 233445555666777777777776666666666655542221 12
Q ss_pred hHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH----------HhcCCCc----hhHHHHHHHHHhccHHHHHH
Q 004019 400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE----------ASREPGR----KEIIAEFRALVSSFPEDMSA 465 (779)
Q Consensus 400 ~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~----------~~~~~~~----~~~~~E~k~l~~sl~~~i~~ 465 (779)
..++.++. ..+...-.....+|.+.|.|+-.-.. .+..-+- +.-+.+++.-...+...+..
T Consensus 276 i~~L~q~~-----~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~ 350 (713)
T PF05622_consen 276 IDELRQEN-----EELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAM 350 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 11222223344455555555444333 1111111 23333333334444445566
Q ss_pred HHHHHHHhHHHhHHHHHHHHhHHhHHHHH
Q 004019 466 MQRQLSKYKEAALDIHILRADVLSLTNVL 494 (779)
Q Consensus 466 L~~e~~r~k~~~~e~~~l~~e~~~l~~~~ 494 (779)
|+.++.++......+..++.++.++...+
T Consensus 351 LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 351 LEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 67777766666666666666666655554
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.92 E-value=0.018 Score=60.28 Aligned_cols=195 Identities=16% Similarity=0.198 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 004019 558 KAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET 637 (779)
Q Consensus 558 k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~ 637 (779)
++-+++..|..+|.-... .+..+.+ +|..+...+..+....+...|.+..+...........+.|-..+..
T Consensus 33 ~aE~e~~~l~rri~~lE~--~le~~ee-------rL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~e 103 (237)
T PF00261_consen 33 KAEAEVASLQRRIQLLEE--ELERAEE-------RLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKE 103 (237)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCHHHHC-------CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356667777777654332 1222222 4445555556666677777777777776666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 638 IGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD 717 (779)
Q Consensus 638 l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~ 717 (779)
.....++.. ...++...++.. ....+..........+..+..+...+......+..++.....+..
T Consensus 104 a~~~~ee~e----------~k~~E~~rkl~~----~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~ 169 (237)
T PF00261_consen 104 AKRRAEEAE----------RKYEEVERKLKV----LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASE 169 (237)
T ss_dssp HHHHHHHHH----------HHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHHHHHHHH----HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 655555532 333333344443 444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019 718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775 (779)
Q Consensus 718 ~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l 775 (779)
....++..+..+...+...-..+...+..+..|...++.++..|...+.++..++-.|
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444555555555555555444444444443
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.92 E-value=0.1 Score=61.80 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQL----------QDALLMDKHMMESEIQQA 694 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~----------~~~l~~ek~~le~el~~~ 694 (779)
....+.||.=|+.=..|+.....-...+...+.....-+..+..|--..++. ...+..++..+...+..+
T Consensus 288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~ 367 (569)
T PRK04778 288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI 367 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555554444444444 445666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 004019 695 NASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLE 755 (779)
Q Consensus 695 ~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le 755 (779)
...+.........+.+.+..+..++..+.++.......+..++..-.++...+..++..+.
T Consensus 368 ~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 368 TERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555554444444444444444444433
No 40
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.89 E-value=0.13 Score=62.33 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=39.2
Q ss_pred hhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (779)
Q Consensus 202 ~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk 269 (779)
...|......|+.++..++.+.-.....|....+.+..+..++.-|..+.+.+..-+...+-++..++
T Consensus 1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666677777777766666665555555555555555555555555555555555544444444
No 41
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.89 E-value=0.2 Score=64.51 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 004019 60 EYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE 97 (779)
Q Consensus 60 e~~~Le~ri~~Le~rq~~~d~~L~~v~~~W~QL~~~i~ 97 (779)
.+..++.+|..|......+.+...-+..+|..|..+..
T Consensus 240 ~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~ 277 (1201)
T PF12128_consen 240 GFEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQ 277 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555655555555666666666666655554
No 42
>PRK01156 chromosome segregation protein; Provisional
Probab=97.88 E-value=0.18 Score=63.23 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004019 511 QVAEIHKLQAMVQDLTDSNLELKLILDM 538 (779)
Q Consensus 511 ~~~eik~Lr~q~~~l~e~~~elk~~ld~ 538 (779)
-..++..|+.++..+.....+++-..++
T Consensus 421 l~~~i~~l~~~i~~l~~~~~el~~~~~~ 448 (895)
T PRK01156 421 ISSKVSSLNQRIRALRENLDELSRNMEM 448 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666555566655554
No 43
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.86 E-value=0.13 Score=61.02 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 004019 558 KAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET 637 (779)
Q Consensus 558 k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~ 637 (779)
|+-+++..||.+|.+...- .|+--|+ ..+...+|...+--..+|..+|...+-.+..|++.++.+.++...|...-+.
T Consensus 157 RAlsQN~eLK~QL~Elq~~-Fv~ltne-~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq 234 (617)
T PF15070_consen 157 RALSQNRELKEQLAELQDA-FVKLTNE-NMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ 234 (617)
T ss_pred HHHHhHHHHHHHHHHHHHH-HHHHHHh-hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6788899999999886653 2332222 3334444555454556888888888888888888888888877777665443
No 44
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.86 E-value=0.12 Score=60.55 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004019 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR 672 (779)
Q Consensus 593 l~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k 672 (779)
|.....++..|+.+.....-.+..|...|.....+.++...+.......+.+|...-.++................|-.+
T Consensus 318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~ 397 (522)
T PF05701_consen 318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEK 397 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444555555555555444444444333333333222222222223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAE-------DRSQNSANLENTQKRLSDVRK 745 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~lee-------el~~~~~~le~~r~~~~e~e~ 745 (779)
........+..+..++.++..+...++..+.--...-..++.++........ .++.--..|+.+.+++.+.+.
T Consensus 398 ~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee 477 (522)
T PF05701_consen 398 AKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEE 477 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHH
Confidence 5555555555555566666666666666555555555556655554332221 133344667777777666544
No 45
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.83 E-value=0.1 Score=61.85 Aligned_cols=86 Identities=15% Similarity=0.270 Sum_probs=54.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHH
Q 004019 618 SDALKSKNEEIEAYLSEIETIGQS--------YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQD-------ALLM 682 (779)
Q Consensus 618 ~~~l~~~~~e~eaL~~Eie~l~~A--------~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~-------~l~~ 682 (779)
++.+...+.+.+-|.+||+.-|.. |-++..||.||.-.+-++-|.+..-..++.|...... .|.+
T Consensus 338 kEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r 417 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRR 417 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444467778888888875532 5678889999999999999888766665555544443 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004019 683 DKHMMESEIQQANASLNFFDM 703 (779)
Q Consensus 683 ek~~le~el~~~~~~ie~~~~ 703 (779)
.++.|..++..+...|..++.
T Consensus 418 ~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 418 QKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.78 E-value=0.14 Score=62.63 Aligned_cols=45 Identities=9% Similarity=0.273 Sum_probs=28.2
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~ 476 (779)
-..+.++...+.+|. .++..++.++.-..++|..++.++.++++.
T Consensus 206 aT~L~qi~~~~~~~~--------------------~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~ 250 (1074)
T KOG0250|consen 206 ATQLEQITESYSEIM--------------------ESLDHAKELIDLKEEEIKNLKKKIKEEEEK 250 (1074)
T ss_pred HhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345666666666664 444556667777777777777776665444
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.22 Score=60.11 Aligned_cols=221 Identities=15% Similarity=0.210 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCC-----------CCCC--CCCCccchhhhhhhHHH
Q 004019 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLG-----------NKHV--AGDRVRDEQRDLRDMES 307 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~-----------~~~~--~~g~~~~~~~~~~~l~~ 307 (779)
...+..|...+.....++...++++..+..++++..|..+...+.. .++. -.++......+.+.+..
T Consensus 257 ~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~ 336 (1174)
T KOG0933|consen 257 KDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRK 336 (1174)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5666666666666677777777766666555555555442111100 0000 00001111224566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------c-cccccC-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 308 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS-------V-KCLSSS-KAFLSVKNQLEKSKSEVFKYQALFE 378 (779)
Q Consensus 308 ~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~-------~-~~i~~S-~~yk~L~~q~~~l~~~~~~~r~~~e 378 (779)
.+.+.+.....+...+.+....+..+.+..+.+...+.. + .-+.++ ..-..|.+|+...+.++-.++..+.
T Consensus 337 ~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k 416 (1174)
T KOG0933|consen 337 NIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIK 416 (1174)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777555555555555544444332 2 111111 2467888888888888877777765
Q ss_pred HHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 004019 379 KLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSS 458 (779)
Q Consensus 379 ~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~s 458 (779)
...-...-.+..++..+ .++ +++.+..-.....+..+..+.|.|...+....-..++ ...++.-...
T Consensus 417 ~a~~k~e~~~~elk~~e-----~e~-----~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~---~e~l~q~~~~ 483 (1174)
T KOG0933|consen 417 QAKLKLEHLRKELKLRE-----GEL-----ATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ---EEALKQRRAK 483 (1174)
T ss_pred HHHHHHHHHHHHHHhhh-----hHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch---HHHHHHHHHH
Confidence 55444433333332221 111 1123455555566667778888888888776666664 3345555566
Q ss_pred cHHHHHHHHHHHHHhH
Q 004019 459 FPEDMSAMQRQLSKYK 474 (779)
Q Consensus 459 l~~~i~~L~~e~~r~k 474 (779)
|+..+..|+.++.++.
T Consensus 484 l~~~~~~lk~~~~~l~ 499 (1174)
T KOG0933|consen 484 LHEDIGRLKDELDRLL 499 (1174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776554
No 48
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.73 E-value=0.2 Score=59.49 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ 758 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e 758 (779)
.+..++.+...-+-.....|-++...+..+.+++..+..+-...+++....-+ ......+.......-+.--..++
T Consensus 508 el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s----~~~et~dyk~~fa~skayaraie 583 (1243)
T KOG0971|consen 508 ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPS----VDPETFDYKIKFAESKAYARAIE 583 (1243)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCC----CchhhhHHHHHHHHhHHHHHHHH
Confidence 33344444333333445555666666666666666666666666666544210 01333344444555566666677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004019 759 SKVYKSRLTLMELQIEL 775 (779)
Q Consensus 759 ~~l~e~~~~l~E~~~~l 775 (779)
.+++.+....+..++.+
T Consensus 584 ~QlrqiEv~~a~rh~~~ 600 (1243)
T KOG0971|consen 584 MQLRQIEVAQANRHMSL 600 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666554
No 49
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.69 E-value=0.11 Score=55.41 Aligned_cols=256 Identities=19% Similarity=0.200 Sum_probs=142.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------ccccccChhHHHHHHHHHHHHHHHHHHH
Q 004019 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS--------VKCLSSSKAFLSVKNQLEKSKSEVFKYQ 374 (779)
Q Consensus 303 ~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~--------~~~i~~S~~yk~L~~q~~~l~~~~~~~r 374 (779)
+.+...+..+..-...-..+|...+.....|..++..|+..--. .+||.+ .+-
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN-------------------~Ll 83 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISN-------------------TLL 83 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHH
Confidence 55666666666555555566666666666666666666544211 133332 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 004019 375 ALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRA 454 (779)
Q Consensus 375 ~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~ 454 (779)
..+..|..++..+.... +- .| +.-...|-..|.+||.+..+|...++. |-.-
T Consensus 84 Kkl~~l~keKe~L~~~~-e~------EE---------E~ltn~L~rkl~qLr~EK~~lE~~Le~------------EqE~ 135 (310)
T PF09755_consen 84 KKLQQLKKEKETLALKY-EQ------EE---------EFLTNDLSRKLNQLRQEKVELENQLEQ------------EQEY 135 (310)
T ss_pred HHHHHHHHHHHHHHHHH-HH------HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH------------hHHH
Confidence 22333455555554333 11 11 223366777888899988888776643 2234
Q ss_pred HHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHH
Q 004019 455 LVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKL 534 (779)
Q Consensus 455 l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~ 534 (779)
+++.|...|..|..+...+. ..+..|+.+--++..++.. .+...|..|-.++.++.....-|+.
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q---~~le~Lr~EKVdlEn~LE~-------------EQE~lvN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQ---EELERLRREKVDLENTLEQ-------------EQEALVNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666655553322 2233455554445544422 3445566677777666666666666
Q ss_pred HHHHHhhcCcChHHHH---------HHHHHHH-HHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 535 ILDMYRRESTDSRDVL---------AARDLEY-KAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMR 604 (779)
Q Consensus 535 ~ld~~~~~~~d~rd~~---------~~~~~E~-k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~ 604 (779)
-|+.--+.|.+|+|++ +.+.++. .++.+|.+|+.+|.....+.-.+ .+.+.+..+..-++...|+
T Consensus 200 ~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k-----~~~~~~eek~ireEN~rLq 274 (310)
T PF09755_consen 200 KLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEK-----MAQYLQEEKEIREENRRLQ 274 (310)
T ss_pred HHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 6776556678888876 3334443 56778888888887544431111 1133334455666777888
Q ss_pred HHHHHHHhhHHHHHHHHhhhHH
Q 004019 605 QKLEAFKRDMVSLSDALKSKNE 626 (779)
Q Consensus 605 ~~l~~~~r~~~~l~~~l~~~~~ 626 (779)
.+|..---....|...+..++.
T Consensus 275 r~L~~E~erreal~R~lsesEs 296 (310)
T PF09755_consen 275 RKLQREVERREALCRHLSESES 296 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765555555555554443
No 50
>PRK01156 chromosome segregation protein; Provisional
Probab=97.67 E-value=0.35 Score=60.61 Aligned_cols=22 Identities=9% Similarity=0.384 Sum_probs=11.7
Q ss_pred HHHHhccHHHHHHHHHHHHHhH
Q 004019 453 RALVSSFPEDMSAMQRQLSKYK 474 (779)
Q Consensus 453 k~l~~sl~~~i~~L~~e~~r~k 474 (779)
..++..+..++..+..++..++
T Consensus 468 ~e~i~~~~~~i~~l~~~i~~l~ 489 (895)
T PRK01156 468 NHIINHYNEKKSRLEEKIREIE 489 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555655555554433
No 51
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.62 E-value=0.37 Score=59.42 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEA------YLSEIETIGQSYDDMQTQNQQLLQ 654 (779)
Q Consensus 594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~ea------L~~Eie~l~~A~e~lqeqn~rl~q 654 (779)
.....+...|+..|+..-.....+...|++.+++.+. +..+++.+..+...|...|.++..
T Consensus 752 ~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~ 818 (1317)
T KOG0612|consen 752 DQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRG 818 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445667778888877777777777777766665544 666777777777777777776654
No 52
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.58 E-value=4.7e-05 Score=92.37 Aligned_cols=276 Identities=18% Similarity=0.213 Sum_probs=22.4
Q ss_pred HhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004019 456 VSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI 535 (779)
Q Consensus 456 ~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ 535 (779)
+..|+..+..+..++..|+.....+.-|+.++.++...+... ..-..++..|+.++..|...-.....+
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~-----------E~~~~el~~lq~e~~~Le~el~sW~sl 327 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERL-----------EELEEELAELQLENEKLEDELNSWESL 327 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777776666666777777666555433 111233344444444444433333322
Q ss_pred HHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004019 536 LDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMV 615 (779)
Q Consensus 536 ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~ 615 (779)
+.-.......|.++...+. .++.+...|..++..... .++.+..........+..+..++..++..+...+....
T Consensus 328 ~~~~~~~~~sPe~l~~~l~---~lq~~~~~L~ek~g~~~~--~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~ 402 (722)
T PF05557_consen 328 LQDIGLEFDSPEDLARALV---QLQQENASLTEKLGSLQS--ELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIR 402 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221100112333333111 122233333333332222 12222222222233334444555555555555544444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 616 SLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQAN 695 (779)
Q Consensus 616 ~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~ 695 (779)
.+..+..-...|.+.|.+=++.+..-...++..+. ..+......+. ...+..-+..++..+..+.
T Consensus 403 RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~-~~~~~~~~~~l--------------~~~~~~~~~ele~~l~~l~ 467 (722)
T PF05557_consen 403 RLERQKALATKERDYLRAQLKSYDKEETTMNPSEQ-DTQRIKEIEDL--------------EQLVDEYKAELEAQLEELE 467 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchh-HHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555444332211111100 00011111111 1111222223333445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 004019 696 ASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY 762 (779)
Q Consensus 696 ~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~ 762 (779)
..+..+.......+..+..+..........+......+..++.++.+++..+..|+..+..++.++.
T Consensus 468 ~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 468 EELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp --------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544444443333323334455555666666666666666666665555554
No 53
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.51 E-value=0.33 Score=56.19 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019 717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE 774 (779)
Q Consensus 717 ~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~ 774 (779)
-+...+..+-..+++.++.-+.++.+.++++.-++..++..+..+..+.....+.+..
T Consensus 704 ~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 704 IQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777777777777777777777777777766666655555443
No 54
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.44 E-value=0.56 Score=57.22 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=79.9
Q ss_pred hhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccC----ccccccC-----hhHHHHHHHHHHHHH
Q 004019 301 DLRDMESVHKELMDQASH---QLLELKGLHDGRIKVLQQLYNLQNTLKS----VKCLSSS-----KAFLSVKNQLEKSKS 368 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~---Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~----~~~i~~S-----~~yk~L~~q~~~l~~ 368 (779)
.|.+|+..+.+.+.+... -...+++|-.....|.+++..+...|.- ++.|.++ .....|+..+..|..
T Consensus 1202 ~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~ 1281 (1758)
T KOG0994|consen 1202 RFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLT 1281 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHH
Confidence 478888889988888733 3455555555555555555555554442 1222222 345566777777777
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004019 369 EVFKYQALFEKLQVE---------KDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (779)
Q Consensus 369 ~~~~~r~~~e~Lq~e---------r~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~ 439 (779)
.+.++++.+++|+.. |.+|.+ +.++.+++-+ +-..+......- |+-.-.+....+|..
T Consensus 1282 ~~keL~e~~~~ik~sdi~GA~~~~r~a~~~----------s~ea~~r~~~-s~~~l~s~~~~s-R~e~l~~k~k~~f~~- 1348 (1758)
T KOG0994|consen 1282 TYKELREQLEKIKESDILGAFNSTRHAYEQ----------SAEAERRVDA-SSRELASLVDQS-RVEELLVKQKGDFGG- 1348 (1758)
T ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHH----------HHHHHHhhhh-hhhcccchhhhh-HHHHHHHHhhhcccc-
Confidence 777777777776543 333322 2333333311 111222222222 332222333333322
Q ss_pred hcCCCchhHHHHHHHHHhccHHHHHHHHHHH
Q 004019 440 SREPGRKEIIAEFRALVSSFPEDMSAMQRQL 470 (779)
Q Consensus 440 ~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~ 470 (779)
..+..+.+.+++..+.+|. +..+-.+|
T Consensus 1349 --~~~n~~~L~el~~~l~sL~--L~~lne~v 1375 (1758)
T KOG0994|consen 1349 --LAENSRLLVELRAELSSLP--LTPLNEQV 1375 (1758)
T ss_pred --cccccHHHHHHHHHhcCCC--CchhhHHh
Confidence 2222578888888888877 55555444
No 55
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.42 E-value=0.22 Score=57.39 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=71.1
Q ss_pred hchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccc
Q 004019 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (779)
Q Consensus 203 ~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~ 282 (779)
.....|+..++..++........+ +.++..|..+++++...|.++.+.....+....-
T Consensus 88 ~~ye~El~~ar~~l~e~~~~ra~~--------------e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~-------- 145 (546)
T KOG0977|consen 88 AKYEAELATARKLLDETARERAKL--------------EIEITKLREELKELRKKLEKAEKERRGAREKLDD-------- 145 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH--------
Confidence 335667777777777776666666 5555555666666666666665544322211100
Q ss_pred CcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 004019 283 LNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (779)
Q Consensus 283 ~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~ 347 (779)
....+.++++++.-++..-..=..++..|..+|..|..++..++..+.+.
T Consensus 146 ---------------~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 146 ---------------YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred ---------------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 00125667777777777777777888888899999999999888887765
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.41 E-value=0.076 Score=63.75 Aligned_cols=114 Identities=15% Similarity=0.235 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004019 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV 667 (779)
Q Consensus 588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~ 667 (779)
.|.++.+..|.|+..||..|...+..+..|+..+.....-...=..|+|.|-.|...||+.|.+|-.-+.-=..+...|+
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 47778889999999999999888887777777662111110001347888888888999999999877776666555565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARI 708 (779)
Q Consensus 668 ~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ 708 (779)
+ .+-..+++++.+...+..=..+|..++++|..+
T Consensus 622 s-------aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 622 S-------ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 222444555555555555555555555554443
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.35 E-value=0.5 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=14.5
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004019 413 SKIADLGIEIQKQIDEKNRIEMRLEE 438 (779)
Q Consensus 413 ~~~~~lE~~l~rir~erd~L~~e~e~ 438 (779)
...+.++.++.+++.+.++|+..++.
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455555555555555555555554
No 58
>PRK11637 AmiB activator; Provisional
Probab=97.30 E-value=0.23 Score=56.79 Aligned_cols=35 Identities=6% Similarity=0.340 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 004019 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSK 624 (779)
Q Consensus 590 ~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~ 624 (779)
+.+|...+.+|..+..+++..+..+..++..+...
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444443333333333333333333
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.19 E-value=1.6 Score=57.11 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004019 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (779)
Q Consensus 303 ~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (779)
++|...++...+-......++..+.++...+...+..+.....
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666665566666666666666666666666665544
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.15 E-value=0.56 Score=51.13 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004019 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID 399 (779)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E 399 (779)
+.-...|..+|..|..++..++...... .+..+..+..++..++..++.+..+-..|+.+.+.+...+.++..+.+
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~~~~----~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e 92 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKKGEE----VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYE 92 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhccccc----CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence 3455667788888888888888775322 134667778888888888888888888888888888777777764443
Q ss_pred hHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHH
Q 004019 400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNR 431 (779)
Q Consensus 400 ~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~ 431 (779)
.. ......++.++..+|.+.|.
T Consensus 93 ~e----------~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 93 EE----------LAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHhhhhhhhhh
Confidence 22 23445555666665544443
No 61
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.15 E-value=0.94 Score=53.74 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL 380 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~L 380 (779)
.|+.++... ..+...++..++.+-.+-... +. .-.|...+..+..+...++.+...+..+
T Consensus 65 ~f~~w~~~~---~~i~~~~~~~ie~~l~~ae~~----------------~~-~~~f~~a~~~~~~~~~~l~~~e~~~~~i 124 (569)
T PRK04778 65 KFEEWRQKW---DEIVTNSLPDIEEQLFEAEEL----------------ND-KFRFRKAKHEINEIESLLDLIEEDIEQI 124 (569)
T ss_pred HHHHHHHHH---HHHHHhhhhhHHHHHHHHHHH----------------Hh-cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356665544 444566666666543222221 11 2345566666777777777777776666
Q ss_pred HHHHHHHHHHH
Q 004019 381 QVEKDNLAWRE 391 (779)
Q Consensus 381 q~er~~~~~~~ 391 (779)
..+.+.+..+.
T Consensus 125 ~~~l~~l~~~e 135 (569)
T PRK04778 125 LEELQELLESE 135 (569)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 62
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.14 E-value=0.0027 Score=77.24 Aligned_cols=133 Identities=26% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHH
Q 004019 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASH 318 (779)
Q Consensus 239 ~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~ 318 (779)
..+.++..+..+++..+.++...+.++..|+........... ..+.... .+....... .+......
T Consensus 189 ~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~-----~i~~Le~--------el~~~~~~~-~i~k~l~~ 254 (722)
T PF05557_consen 189 SLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQ-----KIKELEA--------ELKDQESDA-EINKELKE 254 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHH--------HHHhHhhHH-HHHHHHHH
Confidence 336777777777777777777777777666532111111000 0000000 000000000 11112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 004019 319 QLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKS---KSEVFKYQALFEKLQVEKDNL 387 (779)
Q Consensus 319 Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l---~~~~~~~r~~~e~Lq~er~~~ 387 (779)
++..+..|..+|..+..++..|+.-..+..++.+ ....|+.++..+ +.++..++.....|+.++..|
T Consensus 255 ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeE--e~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW 324 (722)
T PF05557_consen 255 QLAHIRELEKENRRLREELKHLRQSQENVELLEE--EKRSLQRKLERLEELEEELAELQLENEKLEDELNSW 324 (722)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888877777666663 555666665543 333334444444444444443
No 63
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.12 E-value=0.86 Score=52.77 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 582 AIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDA----LKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657 (779)
Q Consensus 582 a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~----l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~ 657 (779)
+-+.+-..+.++..++.-|..|+..+.++.....+++.. ...+..+.++.+.|++.-.+-..+++..+..|..|+.
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566677888888888888888888888777775 7777777788888777777777777777666666554
Q ss_pred H
Q 004019 658 E 658 (779)
Q Consensus 658 e 658 (779)
.
T Consensus 267 ~ 267 (629)
T KOG0963|consen 267 K 267 (629)
T ss_pred h
Confidence 4
No 64
>PF13514 AAA_27: AAA domain
Probab=97.09 E-value=1.7 Score=55.74 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=74.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCccc---cc------------------------
Q 004019 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL--KSVKC---LS------------------------ 351 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l--~~~~~---i~------------------------ 351 (779)
.+..+...+.++..-...--..+..+..+...+..++..|...- -+++- .+
T Consensus 453 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a~ 532 (1111)
T PF13514_consen 453 TVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAAV 532 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHHH
Confidence 45555556655555555555566666666666666666665431 01000 00
Q ss_pred -cC--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhhhch
Q 004019 352 -SS--------------KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETE----------------LNMKIDL 400 (779)
Q Consensus 352 -~S--------------~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E----------------~~~~~E~ 400 (779)
.. ..+..+..++......+.+....+..+......+...-.. |....+
T Consensus 533 ~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~~p~~~~~Wl~~~~- 611 (1111)
T PF13514_consen 533 READELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPLSPAEMRDWLARRE- 611 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH-
Confidence 00 1455555666666666666666666666666665433211 211111
Q ss_pred HHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004019 401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (779)
Q Consensus 401 ~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~ 444 (779)
.....-..+...+..+.+++..+..+...+.......+
T Consensus 612 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 649 (1111)
T PF13514_consen 612 ------AALEAAEELRAARAELEALRARRAAARAALAAALAALG 649 (1111)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11112345566777777788888888888877655554
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.04 E-value=0.73 Score=55.54 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004019 510 DQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDE 572 (779)
Q Consensus 510 ~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e 572 (779)
.-+.+|+.||+.+....+.+.+|+.-+.++.. .|..++.++..++...+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~-------------~Er~lk~eL~qlr~ene~ 471 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTN-------------NERSLKSELSQLRQENEQ 471 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc-------------cchHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999888854 334466666666665554
No 66
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.94 E-value=1.4 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=11.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSY 642 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~ 642 (779)
.+.........|..|++.+.+.|
T Consensus 314 ~l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 314 YLEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455555555555555544
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.92 E-value=1.9 Score=53.47 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV 671 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~ 671 (779)
+|...++++..+...|...+--...+...+--.+.++++|.+-. -..+ .-..+.......++.+..
T Consensus 694 ~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~-------~~~~-------~~~~~l~r~~~~~~~~vl 759 (1317)
T KOG0612|consen 694 RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDY-------KQSQ-------EKLNELRRSKDQLITEVL 759 (1317)
T ss_pred HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhh-------hhhc-------cchhhhhhhHHHHHHHHH
Confidence 44444666666666665554333333333333333333333322 1111 233344444455555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004019 672 RARQLQDALLMDKHMMESEIQ 692 (779)
Q Consensus 672 k~~q~~~~l~~ek~~le~el~ 692 (779)
+....+......+..+..++.
T Consensus 760 ~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 760 KLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred HHHHHHHHHHHHhhhhHHHhh
Confidence 666666666666666666665
No 68
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.90 E-value=1.5 Score=51.91 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (779)
Q Consensus 354 ~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~ 391 (779)
-.|...+..+..+...++.+...+..+..+.+.+....
T Consensus 94 ~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e 131 (560)
T PF06160_consen 94 YRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESE 131 (560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777777776665554
No 69
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=2 Score=52.72 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH-----HHHhh
Q 004019 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYD--------DMQTQNQQLLQQ-----ITERD 660 (779)
Q Consensus 594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e--------~lqeqn~rl~qq-----~~e~d 660 (779)
...+..|+..+.........++.++.++.+.+.-.+++..||+...+-|. +.++.+ +|..+ +.+++
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~-rlk~ea~~~~~~el~ 384 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYE-RLKEEACKEALEELE 384 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHH-HHHHHHhhhhHHHHH
Confidence 33333334444444444444444555555557788888888888877554 111111 11100 33344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 661 DYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRL 740 (779)
Q Consensus 661 d~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~ 740 (779)
-.|..+.. ....+....+....++..+..+...++........+...+..+......+..++..+...+...+.+.
T Consensus 385 ~ln~~~r~----~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~ 460 (1141)
T KOG0018|consen 385 VLNRNMRS----DQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEP 460 (1141)
T ss_pred HHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence 44444444 33333344445555566666666665555555555555555555555555555555555555555555
Q ss_pred HHHHHhHHHHHHhHH
Q 004019 741 SDVRKSSVQVRGSLE 755 (779)
Q Consensus 741 ~e~e~~l~elr~~le 755 (779)
-++...+.+...++.
T Consensus 461 ~e~n~eL~~~~~ql~ 475 (1141)
T KOG0018|consen 461 YELNEELVEVLDQLL 475 (1141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444443
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.85 E-value=1.7 Score=51.75 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 004019 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL 320 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl 320 (779)
-.++..|..+.+.....+...++.|..|+.+-.... . |.+ + ...+..-..|..+++.++
T Consensus 35 seev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~-~--~~~-------p----a~pse~E~~Lq~E~~~L~------- 93 (617)
T PF15070_consen 35 SEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP-P--PEP-------P----AGPSEVEQQLQAEAEHLR------- 93 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C--ccc-------c----ccchHHHHHHHHHHHHHH-------
Confidence 455555566777777777777777777765432221 1 111 0 001111123444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 004019 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDL 400 (779)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~ 400 (779)
.+++.|...+......+..|-.....-+ .....|...+..+.........+++.++.++....+.+....
T Consensus 94 kElE~L~~qlqaqv~~ne~Ls~L~~EqE-----erL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~----- 163 (617)
T PF15070_consen 94 KELESLEEQLQAQVENNEQLSRLNQEQE-----ERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR----- 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH-----
Confidence 2444444444444443333311100000 011122233333444444444555666666666655542221
Q ss_pred HHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 004019 401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL 436 (779)
Q Consensus 401 ~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~ 436 (779)
.++.++..++.-|..+-++.-+|...+
T Consensus 164 ---------eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 164 ---------ELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 236788888888888888875554444
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.81 E-value=1 Score=53.17 Aligned_cols=98 Identities=11% Similarity=0.185 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 627 EIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA 706 (779)
Q Consensus 627 e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~ 706 (779)
....|.++++.+..+..+++....++.....+..+....+.. ....+.++......++.++..++.........+.
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~----~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST----NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 444444444444444444444444444344444443333333 4444445555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004019 707 RIENQLRFCLDQAQRLAEDRSQ 728 (779)
Q Consensus 707 ~~ee~lk~l~~~~~~leeel~~ 728 (779)
.+.+++..+...+..+.++...
T Consensus 383 ~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 383 KLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555433
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.70 E-value=1.1 Score=52.84 Aligned_cols=6 Identities=17% Similarity=0.706 Sum_probs=2.2
Q ss_pred HHhhhh
Q 004019 522 VQDLTD 527 (779)
Q Consensus 522 ~~~l~e 527 (779)
+..++.
T Consensus 176 ~~e~~~ 181 (562)
T PHA02562 176 IRELNQ 181 (562)
T ss_pred HHHHHH
Confidence 333333
No 73
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.48 E-value=2.6 Score=49.03 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 666 LVLEGVRARQLQDALLMDKHMMESEIQQANAS--------LNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQ 737 (779)
Q Consensus 666 l~~E~~k~~q~~~~l~~ek~~le~el~~~~~~--------ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r 737 (779)
+|+|=..+++.+..+.+++..+..++...+.. ++.....+-..+..+..|...+..++.- +...++.|.
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S---~~~e~e~~~ 316 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEAS---LVEEREKHK 316 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34444457777777888888888888776654 3444555555566666666666665544 667788999
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019 738 KRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775 (779)
Q Consensus 738 ~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l 775 (779)
..+..++.++..+...+++...+++.. -.+.+++.+|
T Consensus 317 ~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~EL 353 (629)
T KOG0963|consen 317 AQISALEKELKAKISELEELKEKLNSR-SDYEEIKKEL 353 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHH
Confidence 999999999999999999988888765 4566666554
No 74
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.41 E-value=0.98 Score=47.02 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 624 KNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNI---KLVLEGVRARQLQDALLMDKHMMESEIQQANASLNF 700 (779)
Q Consensus 624 ~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~---kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~ 700 (779)
...+-+++...++.+..++++|..|-.++-..+.+...... ..+ -.++....+..|..++..+..++.++...+..
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666665555544443332221 112 33445566666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 701 FDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 701 ~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
....+..+++.+..+...+..++..+......++.--..
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~ 153 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666655554444443333
No 75
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.37 E-value=1 Score=44.99 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 004019 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRAR 674 (779)
Q Consensus 595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~ 674 (779)
....+|..+|..+...+.....+..+|..++.=.+.|.- .-|++++-.|..+...+.+++.-..+|-.=-.+.-
T Consensus 3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~------iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v 76 (177)
T PF13870_consen 3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL------IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTV 76 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999988888888888888877776666432 24889999999999888888776666554333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Q 004019 675 QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSA------------NLENTQKRLSD 742 (779)
Q Consensus 675 q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~------------~le~~r~~~~e 742 (779)
+.+.-.++....+..+...+...+......+..+.+.+..+..+...+......+.. .|......+.+
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~ 156 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEE 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 555566666666666777777777777777777777777776666666666555332 34444444455
Q ss_pred HHHhHHHHHHhHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSK 760 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~ 760 (779)
+...+..++..++.++..
T Consensus 157 l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 157 LRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555554444443
No 76
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=4 Score=49.80 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=61.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie 699 (779)
.+...+++......+|+.+..-|+=+..+...+..+=...|- ...=++ ...++...|......+...++
T Consensus 914 e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf-~~~~p~----------~are~l~~Lq~k~~~l~k~vn 982 (1174)
T KOG0933|consen 914 EVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDF-ESYDPH----------EAREELKKLQEKKEKLEKTVN 982 (1174)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCcccc-ccCCHh----------HHHHHHHHhhHHHHHHHhhcC
Confidence 344446666777777777777777666665555532222221 111111 233344444444444444444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 700 FF-DMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 700 ~~-~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
-. ...+.+.|+....+...+..++.+.......++.+-.+
T Consensus 983 ~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~ 1023 (1174)
T KOG0933|consen 983 PKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEK 1023 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33 35667778888888888888887776666666655443
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=3 Score=48.01 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhHH
Q 004019 558 KAWAHVHSLKSSLDE 572 (779)
Q Consensus 558 k~~~e~~~Lk~~L~e 572 (779)
+++.++++||++|+.
T Consensus 312 ~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 312 KLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHh
Confidence 355556677776654
No 78
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.23 E-value=1.5 Score=43.79 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=15.3
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004019 739 RLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ 772 (779)
Q Consensus 739 ~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~ 772 (779)
.+.+....+.++..-++.+.....+++..+..+.
T Consensus 152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 79
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.22 E-value=2.3 Score=45.74 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHh
Q 004019 417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLER 496 (779)
Q Consensus 417 ~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~ 496 (779)
.....|-++|.+.=+|...++ .|-..||+.|.++|..|.++.+.+.... ...+.....
T Consensus 153 ~~q~~le~Lr~EKVdlEn~LE------------~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l------~~~~s~~~s---- 210 (310)
T PF09755_consen 153 AKQEELERLRREKVDLENTLE------------QEQEALVNRLWKQMDKLEAEKRRLQEKL------EQPVSAPPS---- 210 (310)
T ss_pred HhHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccccCCCCC----
Confidence 344445566665555544443 3556899999999999999988755431 110000000
Q ss_pred hHhhhHHH---hhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004019 497 KVKECETL---LASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD 571 (779)
Q Consensus 497 ~~~e~~~l---~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~ 571 (779)
..++... .+-...-...|+.|+.+|..++.. |..... ...-....+..-|+.++.++.+|+..|.
T Consensus 211 -~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~q-------L~~sq~--e~~~k~~~~~~eek~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 211 -PRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQ-------LAASQQ--EHSEKMAQYLQEEKEIREENRRLQRKLQ 278 (310)
T ss_pred -cchHHhhcccCCchhHHHHHHHHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011000 001112234566666665554441 111111 1223344466678889999999999875
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.16 E-value=1.3 Score=42.61 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 715 CLDQAQRLAEDRSQNSANLENTQKRLSD 742 (779)
Q Consensus 715 l~~~~~~leeel~~~~~~le~~r~~~~e 742 (779)
+...+..+++++-.....+.....++.+
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLRE 105 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333333333333
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.98 E-value=5 Score=47.61 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=80.4
Q ss_pred HHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004019 605 QKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDK 684 (779)
Q Consensus 605 ~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek 684 (779)
..+...+..+..+...+..+++...-|..|++.+.... -+..+++-+-+.-.-..|...|=-|.-..-+.+..++
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~-----~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV-----NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556667777777777778877776542 2333333333333333333334344445555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHH
Q 004019 685 HMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENT---QKRLSDVRKSSV 748 (779)
Q Consensus 685 ~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~---r~~~~e~e~~l~ 748 (779)
..+...+...=..++...-.-.+.++..+.++..+..+-+.+..+-..++.+ .+++.+++.+|.
T Consensus 522 N~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~ 588 (594)
T PF05667_consen 522 NSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQID 588 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666665555555555555566778888888888887777766655544 445555555444
No 82
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.93 E-value=5.7 Score=47.86 Aligned_cols=127 Identities=12% Similarity=0.133 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004019 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA 673 (779)
Q Consensus 594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~ 673 (779)
..+..+|=.|+.-|.....++..|...|++-++-++.-++ ....|...|++-.
T Consensus 586 e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALa---------------------------nLKsKYE~EK~~v 638 (717)
T PF09730_consen 586 EELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALA---------------------------NLKSKYENEKAMV 638 (717)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHhhhhhhH
Confidence 3445566667777766666666666666655554442221 1111222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004019 674 RQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS 747 (779)
Q Consensus 674 ~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l 747 (779)
.-+...|+.+...+.....++..--.-+..+....--++..++.++...++|...+.+-+...=.+--.+.+.+
T Consensus 639 ~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLTQRL 712 (717)
T PF09730_consen 639 SETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRL 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445777788888888888888888888888888888888999999999888887776655433333333333
No 83
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.91 E-value=6.8 Score=48.56 Aligned_cols=146 Identities=14% Similarity=0.244 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 004019 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALF-EKL 380 (779)
Q Consensus 302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~-e~L 380 (779)
+.+.++.+.++++-...+..|++.+++....+..+...++.+..+. ...+..++..+..++.++..+...+ ..+
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~-----~n~i~~~k~~~d~l~k~I~~~~~~~~~~~ 392 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREI-----ENSIRKLKKEVDRLEKQIADLEKQTNNEL 392 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556777788888888889999999999999999998888876643 0122233333333333333333333 333
Q ss_pred HHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccH
Q 004019 381 QVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFP 460 (779)
Q Consensus 381 q~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~ 460 (779)
+.++......+ ++ +..++..++..+.+|+.+++++.-++..-..+.+ .++..+.++.
T Consensus 393 ~~~~~e~e~k~-~~----------------L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~------~i~~~i~~l~ 449 (1074)
T KOG0250|consen 393 GSELEERENKL-EQ----------------LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE------HIEGEILQLR 449 (1074)
T ss_pred hhhHHHHHHHH-HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHH
Confidence 33333332222 11 2456677777777888887777776644322222 2334444455
Q ss_pred HHHHHHHHHHHHhHH
Q 004019 461 EDMSAMQRQLSKYKE 475 (779)
Q Consensus 461 ~~i~~L~~e~~r~k~ 475 (779)
..|.....+++.++.
T Consensus 450 k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 450 KKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555543
No 84
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=6.4 Score=46.73 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 578 RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657 (779)
Q Consensus 578 ~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~ 657 (779)
++-..+.-.+..+..+.++...+..|-.+|.+.+-++...+..+.......+..++||+.+.+-.-++|+.+.+++..-.
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq 510 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQ 510 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45556666666777777888888888888888888888888888888999999999999988777777777777765555
Q ss_pred Hhhh
Q 004019 658 ERDD 661 (779)
Q Consensus 658 e~dd 661 (779)
++.+
T Consensus 511 ~l~~ 514 (1118)
T KOG1029|consen 511 ELNH 514 (1118)
T ss_pred HHHH
Confidence 5544
No 85
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.65 E-value=3.8 Score=43.77 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=33.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHH
Q 004019 416 ADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI 482 (779)
Q Consensus 416 ~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~ 482 (779)
..+.+.+..++..||+|..++ .||+..+.++..+-..+-.+|..||+-..+++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kv-------------rE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 30 DELRKEASELAEKRDELNAKV-------------RELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666677666555 456666666666666777777777665544444
No 86
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.61 E-value=7.5 Score=46.86 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004019 675 QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL 754 (779)
Q Consensus 675 q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~l 754 (779)
..|.....++..+..++..+......... ...+....+......+...+..+.+....-+..+.+++.++..+....
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A 435 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA 435 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444 222233344445555555555555555555556666777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004019 755 EESQSKVYKSRLTLMELQIEL 775 (779)
Q Consensus 755 e~~e~~l~e~~~~l~E~~~~l 775 (779)
...+..|...++.+....-.|
T Consensus 436 ~E~q~~LnsAQDELvtfSEeL 456 (717)
T PF09730_consen 436 GESQGSLNSAQDELVTFSEEL 456 (717)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665554433
No 87
>PRK09039 hypothetical protein; Validated
Probab=95.50 E-value=3.9 Score=45.29 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 004019 554 DLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALK 622 (779)
Q Consensus 554 ~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~ 622 (779)
-...=+..++......|+.++.+ |..+.+...--..+...++..+..|+.++..++.....++..++
T Consensus 39 ~~q~fLs~~i~~~~~eL~~L~~q--Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 39 VAQFFLSREISGKDSALDRLNSQ--IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555888888888888887774 66677777777777778888888888888776665555444443
No 88
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.46 E-value=2.6 Score=40.60 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 004019 700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK 763 (779)
Q Consensus 700 ~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e 763 (779)
.+..+|.-+++.+......+....+.++......+.+.+++..++......-.+++....++..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555555555544444
No 89
>PRK09039 hypothetical protein; Validated
Probab=95.36 E-value=2.7 Score=46.62 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 602 DMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657 (779)
Q Consensus 602 ~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~ 657 (779)
.+...|+....++..+.+.|.--......|..+|..+...|+.....+.++..+..
T Consensus 50 ~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 50 GKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333344445545556666666666666666666565555554433
No 90
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.01 E-value=6.1 Score=42.29 Aligned_cols=81 Identities=9% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV 761 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l 761 (779)
.++..+......++..|..+.+.+.....++..+...+..+.++....-..+.....++.++...+..++..+-.++..+
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444333333333333333333333333333333333333
Q ss_pred H
Q 004019 762 Y 762 (779)
Q Consensus 762 ~ 762 (779)
.
T Consensus 245 k 245 (294)
T COG1340 245 K 245 (294)
T ss_pred H
Confidence 3
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.98 E-value=9.2 Score=44.23 Aligned_cols=129 Identities=12% Similarity=0.149 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHH
Q 004019 353 SKAFLSVKNQLEK-SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNR 431 (779)
Q Consensus 353 S~~yk~L~~q~~~-l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~ 431 (779)
.+.|..+.+++.+ +++.+.-.-..++.|+.....+-.++.+.+ . ...++..++...++++++...
T Consensus 212 ~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~e----k----------~~~~~eslre~~~~L~~D~nK 277 (581)
T KOG0995|consen 212 EDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINERE----K----------DPGKEESLREKKARLQDDVNK 277 (581)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c----------CcchHHHHHHHHHHHHhHHHH
Confidence 3344444444444 444454455566666777766666653331 0 156788888888888888888
Q ss_pred HHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHH-------HhHHHHHHHHhHHhHHHHHH
Q 004019 432 IEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKE-------AALDIHILRADVLSLTNVLE 495 (779)
Q Consensus 432 L~~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~-------~~~e~~~l~~e~~~l~~~~~ 495 (779)
.++=+.+....... ...+..++.=+..-..++..++.++..+|. ..+++..++.|...+...+.
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~ 349 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN 349 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 88877775555543 244444444444455555555555555442 22445555555444444443
No 92
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.45 E-value=9.2 Score=41.75 Aligned_cols=103 Identities=15% Similarity=0.264 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV 671 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~ 671 (779)
++.....+=..|+.+|...-....+....|..+..-...+..|||.++...-.+...|..+..--..-+.....++.|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45555556667777777776677777777777788888888888888888777777777777666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004019 672 RARQLQDALLMDKHMMESEIQQA 694 (779)
Q Consensus 672 k~~q~~~~l~~ek~~le~el~~~ 694 (779)
.....+..+...+..|+.=+.++
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444433
No 93
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.34 E-value=6.3 Score=39.45 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK 704 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~ 704 (779)
-+.+.++-.|++.+..-.-.+.++|.++.-+-...+.-++.|..+=- +|.++...+..+..-++.....+...
T Consensus 59 l~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~-------~Lqeen~kl~~e~~~lk~~~~eL~~~ 131 (193)
T PF14662_consen 59 LQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIE-------TLQEENGKLLAERDGLKKRSKELATE 131 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHhhhhHHHHHHHHHHh
Confidence 34667778888888888888888888888777666665555554222 23333333333333222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 004019 705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK 763 (779)
Q Consensus 705 i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e 763 (779)
...+--++=.+..=+......+.......+.+..-+.+...-..+||..+.+.+.++-+
T Consensus 132 ~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 132 KATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222222222222333344455555556666666666666666666666666543
No 94
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.32 E-value=16 Score=44.12 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004019 414 KIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (779)
Q Consensus 414 ~~~~lE~~l~rir~erd~L~~e~e~~~~~~~ 444 (779)
+...++..+..++.+++.....+........
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~ 293 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLRELAADPL 293 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4467788888888888887777776554444
No 95
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.23 E-value=7.3 Score=39.77 Aligned_cols=102 Identities=21% Similarity=0.343 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLS---DALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT-ERDDYNIKLV 667 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~---~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~-e~dd~~~kl~ 667 (779)
-|..++.++..|+..|....++...|. ..+...+.+...|.-|-+++.+-|+.+...+-.|..... -..++.++..
T Consensus 63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~ 142 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTG 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999988877777544 477777888888888888888888888777777663332 2334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 668 LEGVRARQLQDALLMDKHMMESEIQQ 693 (779)
Q Consensus 668 ~E~~k~~q~~~~l~~ek~~le~el~~ 693 (779)
+-.+-..+.+..+....+.-+.++..
T Consensus 143 ~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 143 LKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333444444444444444444444
No 96
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=18 Score=43.56 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (779)
Q Consensus 598 ~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~ 653 (779)
.++-++-..+.....+..++..++..-++...++.-++..+....+.|-.++.-+.
T Consensus 792 eqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la 847 (970)
T KOG0946|consen 792 EQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLA 847 (970)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchh
Confidence 34444444455555555555555555555555665555555555555555444443
No 97
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.77 E-value=5 Score=36.25 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV-QVR 751 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~-elr 751 (779)
.......+......++..+...+...+.+...-..+...+..|..+.......+..+...+...++.+.. ++..+ ++.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~ 85 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELE 85 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4444556666777777777777777777777777777777777777777777777777777777777666 44444 777
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 004019 752 GSLEESQSKVYKSRLTLMELQ 772 (779)
Q Consensus 752 ~~le~~e~~l~e~~~~l~E~~ 772 (779)
.++..++.-..-.+.+++|.+
T Consensus 86 ~r~~k~~~dka~lel~l~e~~ 106 (107)
T PF09304_consen 86 SRLLKAQKDKAILELKLAEAK 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHhhc
Confidence 788888877777777777754
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.66 E-value=15 Score=41.37 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 004019 677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGS 753 (779)
Q Consensus 677 ~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~ 753 (779)
+..+......++.+-..+...+..+.....++.-.+.+-......++.++....+.++.++.+...+...+..+..+
T Consensus 170 ~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 170 LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444555455555555555555555555555555555566666666666666666666666666555533
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.59 E-value=5.8 Score=42.76 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=24.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~ 668 (779)
+|.........|..|+..-...+...|++-.+|+.++.++...-..++.
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~ 255 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAA 255 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555555555444444433333333
No 100
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=23 Score=42.66 Aligned_cols=92 Identities=11% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ 758 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e 758 (779)
.+..+...++.++..++..+....+.+..+.+++..+..++..-.--.......-++...++..+.++-+++..-+...+
T Consensus 845 ~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~ 924 (970)
T KOG0946|consen 845 NLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQK 924 (970)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHH
Confidence 44556666666666666666666666777767666665444332111111222223444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 004019 759 SKVYKSRLTLME 770 (779)
Q Consensus 759 ~~l~e~~~~l~E 770 (779)
..+..++..+..
T Consensus 925 ~~i~alk~~l~d 936 (970)
T KOG0946|consen 925 EKIQALKEALED 936 (970)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 101
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.30 E-value=25 Score=42.78 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV 671 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~ 671 (779)
+|+.-.++...-|.+++.+...+++.....-..+...+.+..=+..+ .....-.+++.++...++..
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l----------~~~h~~lL~K~~di~kQle~--- 456 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTEL----------RQEHADLLRKYDDIQKQLES--- 456 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---
Confidence 56655555555666665555444444443333333333332222222 22222233444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 672 RARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAED 725 (779)
Q Consensus 672 k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leee 725 (779)
..+.+....+++..+...+..+......+..+.+...+.+..+..++..+..+
T Consensus 457 -~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e 509 (980)
T KOG0980|consen 457 -AEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIE 509 (980)
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444444444444444444444443333333
No 102
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=24 Score=42.24 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 004019 600 IADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDA 679 (779)
Q Consensus 600 i~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~ 679 (779)
...|+..|....-....|...|--..-....-..||+.+..--+-|-....+|.+.+.+....+.+|.-|+...+..+..
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33444444444333333333333333233333445555555555555566666666666666666666655554443331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 004019 680 LLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGS 753 (779)
Q Consensus 680 l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~ 753 (779)
....-.. -......+.....+-+...+.+..++..+++|....-+.++.+...+.++......++..
T Consensus 519 ~q~a~~~-------~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~la 585 (1118)
T KOG1029|consen 519 KQSAHKE-------TTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLA 585 (1118)
T ss_pred hhhhccC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1111100 011122223333333333444444444455554444444444444444444444443333
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.12 E-value=24 Score=42.06 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 689 SEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728 (779)
Q Consensus 689 ~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~ 728 (779)
..|-.+...|.+|+..|.++-..-+.++.++..+...+.+
T Consensus 491 ~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 491 RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666666666666666666666666555544
No 104
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.87 E-value=25 Score=41.70 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004019 516 HKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD 571 (779)
Q Consensus 516 k~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~ 571 (779)
+..+.+|.-+.+-+..+.-+.+.... +.+.++.+.+ +..|++.|..+|.
T Consensus 244 ~~~~dqlqel~~l~~a~~q~~ee~~~-~re~~~tv~~------LqeE~e~Lqskl~ 292 (716)
T KOG4593|consen 244 KNMKDQLQELEELERALSQLREELAT-LRENRETVGL------LQEELEGLQSKLG 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHH------HHHHHHHHHHHHH
Confidence 44445555555555555445554443 4456666665 4444555555553
No 105
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.44 E-value=15 Score=38.07 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK 704 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~ 704 (779)
..+..-|.-|.+++..-+++ |..++.+++.-+++-+..... .. ..++.-+..|+..-..+.+.--+...-
T Consensus 65 ~t~nqrl~~E~e~~Kek~e~---q~~q~y~q~s~Leddlsqt~a----ik---eql~kyiReLEQaNDdLErakRati~s 134 (333)
T KOG1853|consen 65 ETRNQRLTTEQERNKEKQED---QRVQFYQQESQLEDDLSQTHA----IK---EQLRKYIRELEQANDDLERAKRATIYS 134 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHhccHHHHhhhhhhhh
Confidence 66777788888888666665 888899899888886666655 22 233344444444444444444455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004019 705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL 754 (779)
Q Consensus 705 i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~l 754 (779)
+..++-.+...+...+.++.|+-..+..++.+.+- ..+..+|+..+
T Consensus 135 leDfeqrLnqAIErnAfLESELdEke~llesvqRL----kdEardlrqel 180 (333)
T KOG1853|consen 135 LEDFEQRLNQAIERNAFLESELDEKEVLLESVQRL----KDEARDLRQEL 180 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 78888889999999999999988877777766543 34444454444
No 106
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.37 E-value=21 Score=41.64 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004019 241 KAKLNRLKGELESAVKELEECNCKLAALRAE 271 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e 271 (779)
..-..-|..++..+..++..++.++...+.+
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888888888888888888777644
No 107
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.37 E-value=11 Score=36.20 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ-------NSANLENTQKRLSDVRK 745 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~-------~~~~le~~r~~~~e~e~ 745 (779)
....+.++.++.+........+..+.+..+..+..+...+..+...+..+..++.. +.+.+..++.++.+++.
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777778877777777777777777777777777777766666666666555 44445555555555555
Q ss_pred hHHHHHHhHHHHHHH
Q 004019 746 SSVQVRGSLEESQSK 760 (779)
Q Consensus 746 ~l~elr~~le~~e~~ 760 (779)
...++...+...++.
T Consensus 102 ~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 102 LNSSLENLLQEKEQE 116 (140)
T ss_pred HhHHHHHHHHHHHHH
Confidence 555555555544444
No 108
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.36 E-value=14 Score=37.51 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 694 ANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 694 ~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
+...++.....+...+..+..|..++.-.... +...+-..+++..++...+..+...+..+.+++++.
T Consensus 123 L~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~---~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 123 LQRKLSQLEQKLQEKEKKIQELEKQLELENKS---FRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333322 344445555555556666666665555555555543
No 109
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.02 E-value=31 Score=42.52 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004019 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAER 272 (779)
Q Consensus 239 ~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~ 272 (779)
....-..-|.+++.++..++..++.++...+.+.
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456677889999999999999999998888653
No 110
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.92 E-value=12 Score=35.57 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 623 SKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE 658 (779)
Q Consensus 623 ~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e 658 (779)
+-..+-..|..||..+..-++++..||.=|+.|+..
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678889999999999999999999999998864
No 111
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.70 E-value=21 Score=38.91 Aligned_cols=150 Identities=14% Similarity=0.161 Sum_probs=80.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRAR--QLQDALLMDKHMMESEIQQANAS 697 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~--q~~~~l~~ek~~le~el~~~~~~ 697 (779)
-|.........|..|++.+.+-+.+++..+.-|-.+++....-...+.. .. .....+-...+.+..++.+++.+
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~----~~~~~ere~lV~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGA----RHFPHEREDLVEQLEKLREQIEQLERD 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccc----cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777766666655554332221111 11 12223344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019 698 LNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRK---SSVQVRGSLEESQSKVYKSRLTLMELQIE 774 (779)
Q Consensus 698 ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~---~l~elr~~le~~e~~l~e~~~~l~E~~~~ 774 (779)
+.....+..++...-..+.....++..|+.. .+-.....++++.. +.+=|+.++..++....-++..++-++.-
T Consensus 149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~---~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 149 LQSLLDEKEELVTERDAYKCKAHRLNHELNY---ILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444445555444432 22333334444443 44556677777777777777777777777
Q ss_pred Hh
Q 004019 775 LV 776 (779)
Q Consensus 775 le 776 (779)
++
T Consensus 226 le 227 (319)
T PF09789_consen 226 LE 227 (319)
T ss_pred HH
Confidence 66
No 112
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.64 E-value=35 Score=40.57 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 210 KNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (779)
Q Consensus 210 ~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~l 268 (779)
..|...-..+...+..+..++.+.++...-....+-+|..+++...+++...+.+++..
T Consensus 108 ~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss 166 (716)
T KOG4593|consen 108 TRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSS 166 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666677777777777777777888888888888888888888887543
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.41 E-value=41 Score=40.97 Aligned_cols=54 Identities=20% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 686 MMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 686 ~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
.++.+...+.-.++........++.+.......+..++.|+..+...++...+.
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444444444444444444444433
No 114
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.16 E-value=18 Score=36.32 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=15.2
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004019 738 KRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQI 773 (779)
Q Consensus 738 ~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~ 773 (779)
+.+.-++..+.++...+......+..++..+.++-.
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~ 200 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQ 200 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433
No 115
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.05 E-value=13 Score=41.66 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQA----QRLAEDRSQNSANLENTQKRLSDVRKSSV 748 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~----~~leeel~~~~~~le~~r~~~~e~e~~l~ 748 (779)
..+....+..++..++..+++++..++....+.....+.-+.|.++. +.+++...........+..++.+++.+++
T Consensus 366 l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 366 LKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666677777777777777777766666666555544443 44455555556666677777888888888
Q ss_pred HHHHhHHHHH
Q 004019 749 QVRGSLEESQ 758 (779)
Q Consensus 749 elr~~le~~e 758 (779)
++..-++.-+
T Consensus 446 Dlmf~le~qq 455 (493)
T KOG0804|consen 446 DLMFFLEAQQ 455 (493)
T ss_pred hHheehhhhh
Confidence 8888776544
No 116
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.75 E-value=44 Score=41.20 Aligned_cols=34 Identities=0% Similarity=-0.148 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019 742 DVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775 (779)
Q Consensus 742 e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l 775 (779)
..+.++..|++..+..++.+..+-.++.+..+..
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467777888888888888888887777776653
No 117
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.30 E-value=33 Score=37.85 Aligned_cols=255 Identities=15% Similarity=0.131 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccc
Q 004019 43 LQFQNQKLVQKLETQKVEYSALENKFAQLKER--------QQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRC 114 (779)
Q Consensus 43 l~fQn~aL~rql~~~kre~~~Le~ri~~Le~r--------q~~~d~~L~~v~~~W~QL~~~i~~l~~~~~~~~~~~~~~~ 114 (779)
|.--=++|--||+..+-+-.+++.-+..++.. +++|+..|..+...-.+.++|+.-.-.|
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqR------------ 363 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQR------------ 363 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33444578888888888887777777666554 6688889999999999999888633221
Q ss_pred cccccCCCCCCCchHHHHHHhhccCCCCCCCCCCcchHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh-c-
Q 004019 115 LSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD-L- 192 (779)
Q Consensus 115 ~~~~~~~~~~~~~~~fl~~ll~~~~~~~s~~~~~~~~~e~~L~~r~~~tk~~l~~l~~~~~~~~~~~~~l~~~l~~~-~- 192 (779)
-|.+| -++-+--|.+-..+|.++|..+..+... ++...|... +
T Consensus 364 ---------------ELekL--------------reEKdrLLAEETAATiSAIEAMKnAhrE------EmeRELeKsqSv 408 (593)
T KOG4807|consen 364 ---------------ELEKL--------------REEKDRLLAEETAATISAIEAMKNAHRE------EMERELEKSQSV 408 (593)
T ss_pred ---------------HHHHH--------------HHHHHhhhhhhhhhhhHHHHHHHHHHHH------HHHHHHHhhhcc
Confidence 12233 2333333444444455555544444332 233333222 1
Q ss_pred cCCchhhhhhhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 004019 193 QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL----AAL 268 (779)
Q Consensus 193 ~~~~~~~~~~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl----~~l 268 (779)
..|+.. .......++..++..+.-|......--.+..++-..+..-+.-+.++..+--++-.--.....|| ++|
T Consensus 409 nsdvea--LRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrL 486 (593)
T KOG4807|consen 409 NSDVEA--LRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRL 486 (593)
T ss_pred ccChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 111111 11123445556666666555544444344444433333333333333333222222222222233 222
Q ss_pred HhccccccCCccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 004019 269 RAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVK 348 (779)
Q Consensus 269 k~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~ 348 (779)
+. ...| .++ ++|.|...++..-+|+ -|......||+=|.+++..|..+++.+ ++|-.
T Consensus 487 Rt---lltg-----dGg-----GtGsplaqgkdayELE-------VLLRVKEsEiQYLKqEissLkDELQta---lrDKk 543 (593)
T KOG4807|consen 487 RT---LLTG-----DGG-----GTGSPLAQGKDAYELE-------VLLRVKESEIQYLKQEISSLKDELQTA---LRDKK 543 (593)
T ss_pred HH---Hhcc-----CCC-----CCCCccccCcchhhHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHH---Hhhhh
Confidence 21 1111 101 1233444444444443 344445566777766666666655443 33434
Q ss_pred ccccChhHHHHHHHHHHHHHHHH
Q 004019 349 CLSSSKAFLSVKNQLEKSKSEVF 371 (779)
Q Consensus 349 ~i~~S~~yk~L~~q~~~l~~~~~ 371 (779)
|. |+-|+.++..+++.++..+
T Consensus 544 ya--SdKYkDiYtELSiaKakad 564 (593)
T KOG4807|consen 544 YA--SDKYKDIYTELSIAKAKAD 564 (593)
T ss_pred cc--ccchhHHHHHHHHHHHhhh
Confidence 43 5899999999999887655
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.10 E-value=32 Score=37.52 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004019 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLE 669 (779)
Q Consensus 590 ~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E 669 (779)
.+++..++.+|.-||.++...+-........ .--.+-+.|+..+|. ++.++.++...+.-.-|-..+++.|
T Consensus 92 rqkl~E~qGD~KlLR~~la~~r~~~~~~~~~--~~~~ere~lV~qLEk-------~~~q~~qLe~d~qs~lDEkeEl~~E 162 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLREKLARQRVGDEGIGAR--HFPHEREDLVEQLEK-------LREQIEQLERDLQSLLDEKEELVTE 162 (319)
T ss_pred HHHHHHHhchHHHHHHHHHhhhhhhcccccc--ccchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554432211111111 111455555555544 4455555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 670 GVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLE 734 (779)
Q Consensus 670 ~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le 734 (779)
|=--......|..++..+=..-..--.+|+.+..+-+-+.+.+..++.+...+..-+...-..++
T Consensus 163 RD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 163 RDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333333333322222111111246666666666666666666666666655555555555
No 119
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.00 E-value=48 Score=39.36 Aligned_cols=123 Identities=16% Similarity=0.173 Sum_probs=58.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCc-cccccChhHHHHHHH-------HHHHHHHHH
Q 004019 301 DLRDMESVHKELMDQASHQLLELK-GLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQ-------LEKSKSEVF 371 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~Rl~ELe-~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~S~~yk~L~~q-------~~~l~~~~~ 371 (779)
.++.|-.+.++++-.|.+--.++. ++.+.. .++.+|+.+..-. ...- .....|..+ +.++.-.+.
T Consensus 191 niekMi~aFEeLR~qAEn~r~EM~fKlKE~~----~k~~~leeey~~E~n~kE--kqvs~L~~q~~eKen~~kdl~~~l~ 264 (786)
T PF05483_consen 191 NIEKMIAAFEELRVQAENDRQEMHFKLKEDY----EKFEDLEEEYKKEVNDKE--KQVSLLQTQLKEKENKIKDLLLLLQ 264 (786)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 467788888888888887777665 444433 3344444443311 0000 122233332 223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004019 372 KYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (779)
Q Consensus 372 ~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~ 439 (779)
..+..+..|+....-.-..+.+.. +-.++ +.+.+.....-+++..+.-.-|..++..+
T Consensus 265 es~~~~~qLeE~~~~q~E~Lkes~---~~qe~-------L~~eL~~~K~slq~~~~tq~~le~~lq~~ 322 (786)
T PF05483_consen 265 ESQDKCNQLEEKTKEQHENLKESN---EEQEH-------LLQELEDIKQSLQESESTQKALEEDLQQA 322 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH---HhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433222222222 11111 13444555566666666666666666554
No 120
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.82 E-value=37 Score=37.79 Aligned_cols=62 Identities=24% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHH----------HHHHHH-HHHHHHHHHHhhhHHhc
Q 004019 513 AEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLA----------ARDLEY-KAWAHVHSLKSSLDEQS 574 (779)
Q Consensus 513 ~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~----------~~~~E~-k~~~e~~~Lk~~L~e~~ 574 (779)
..+..|=..+.+|.....-|+..+|.--..+.-+|||.. .+.... ++++||++|++.|....
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq 273 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ 273 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555544444444444555556777888872 333333 45888888888876533
No 121
>PLN02939 transferase, transferring glycosyl groups
Probab=89.24 E-value=60 Score=40.76 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCc-cccccCh----hHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 004019 320 LLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSK----AFLSVKNQLEKSKSEVFK-----------YQALFEKLQVE 383 (779)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~S~----~yk~L~~q~~~l~~~~~~-----------~r~~~e~Lq~e 383 (779)
+.+|++...|...|..++.-|.|+|..- ..+.-+. .-..+..|+..++.++-. +-.++..|..|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHH
Confidence 4566777788888999999999987742 1111111 122344454444443321 22333444444
Q ss_pred HHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhH-HHHHHHHHhccHH
Q 004019 384 KDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEI-IAEFRALVSSFPE 461 (779)
Q Consensus 384 r~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~-~~~-~~E~k~l~~sl~~ 461 (779)
.-.+...+ ++ ++.+..+. ++.+..+-.+|+.-+=+.+..-+|.++|-.+..+..+ .+. .+-|=..++.|+.
T Consensus 235 ~~~~~~~~-~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (977)
T PLN02939 235 NMLLKDDI-QF-LKAELIEV-----AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQD 307 (977)
T ss_pred hHHHHHHH-HH-HHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHH
Confidence 44444443 33 23333332 2235677888888888888888888888776666665 222 1224555666666
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHH
Q 004019 462 DMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (779)
Q Consensus 462 ~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~ 494 (779)
-+..+..++..+-........|+..+..+.+-+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (977)
T PLN02939 308 LLDRATNQVEKAALVLDQNQDLRDKVDKLEASL 340 (977)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 666666666655444444455566555555544
No 122
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.18 E-value=46 Score=38.02 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004019 240 DKAKLNRLKGELESAVKELEECNCKLAALRAER 272 (779)
Q Consensus 240 ~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~ 272 (779)
...-..-|..++..+..++..++.++...+.+.
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355677889999999999999999998888663
No 123
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.05 E-value=35 Score=39.02 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004019 588 ISQQRLAAAEAEIADMRQKLEAF 610 (779)
Q Consensus 588 ~~~~kl~~~e~ei~~L~~~l~~~ 610 (779)
..+.+|...+.++..||.+..-.
T Consensus 163 aL~ekLk~~~een~~lr~k~~ll 185 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLL 185 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHH
Confidence 45667888888888887776554
No 124
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.20 E-value=45 Score=36.67 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004019 678 DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEES 757 (779)
Q Consensus 678 ~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~ 757 (779)
..++.++..+..++......+......+..+...+..+..++..+..++..+....+..+.- -..++..++..++.+
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~---t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW---TRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666666666666666555554443 344555555555555
Q ss_pred HH
Q 004019 758 QS 759 (779)
Q Consensus 758 e~ 759 (779)
+.
T Consensus 289 e~ 290 (325)
T PF08317_consen 289 EK 290 (325)
T ss_pred HH
Confidence 44
No 125
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.17 E-value=30 Score=34.65 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=15.2
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004019 738 KRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ 772 (779)
Q Consensus 738 ~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~ 772 (779)
..+.+....+..++..+......+..+...+.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 151 KELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443
No 126
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.95 E-value=33 Score=34.86 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=87.2
Q ss_pred HHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004019 560 WAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (779)
Q Consensus 560 ~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~ 639 (779)
..++.-||++|-+...++-.| .++ |-.+.+.+.+++..+.........+...+..+..+.+...+|+....
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K-~~E--------iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~ 79 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQK-DSE--------IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK 79 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HhH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence 356777777776655542222 222 34445555566666666666666666655555666555555554443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHH-----------HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 640 QSYDDMQTQNQQLLQQITERDDYNIKL-----------VLEGVRARQ-----LQDALLMDKHMMESEIQQANASLNFFDM 703 (779)
Q Consensus 640 ~A~e~lqeqn~rl~qq~~e~dd~~~kl-----------~~E~~k~~q-----~~~~l~~ek~~le~el~~~~~~ie~~~~ 703 (779)
.--+-+.+.-..+-..+..+-+.-... ..+.++... ...+|..+.+.|..++.......+.+.
T Consensus 80 ~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~- 158 (202)
T PF06818_consen 80 NEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQR- 158 (202)
T ss_pred CHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 333333333222222222222211111 223333322 244666777777777666555554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004019 704 KAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS 747 (779)
Q Consensus 704 ~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l 747 (779)
..|+..-..+.....++-.==..+...|-.|-++...++..+
T Consensus 159 --~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 159 --SSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555544444444554555555555566554
No 127
>PF15294 Leu_zip: Leucine zipper
Probab=87.92 E-value=41 Score=35.92 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----c-cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 004019 316 ASHQLLELKGLHDGRIKVLQQLYNLQNTLKS----V-KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (779)
Q Consensus 316 a~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~----~-~~i~~S~~yk~L~~q~~~l~~~~~~~r~~ 376 (779)
+......+..|......-..++-..+..|.- + .-...|..|..++.-+..=+.++..+|..
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkr 275 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKR 275 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHH
Confidence 4445556677777777777777777766552 2 44566889999987776655555555544
No 128
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.92 E-value=23 Score=33.04 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=34.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004019 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (779)
Q Consensus 353 S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~ 395 (779)
+..+-.|.+++..+..++..++..+..|+.+|+.+...+-.+.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888889999999999999999988877764443
No 129
>PF15294 Leu_zip: Leucine zipper
Probab=86.81 E-value=48 Score=35.46 Aligned_cols=25 Identities=8% Similarity=0.332 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHH
Q 004019 446 KEIIAEFRALVSSFPEDMSAMQRQL 470 (779)
Q Consensus 446 ~~~~~E~k~l~~sl~~~i~~L~~e~ 470 (779)
.....-|+.++.+-..+|..|...+
T Consensus 252 T~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 252 TAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred cHHHHHhHHHHHhccHHHHHHHHHh
Confidence 3455668888888888887776644
No 130
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.63 E-value=62 Score=36.62 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 004019 597 EAEIADMRQKL 607 (779)
Q Consensus 597 e~ei~~L~~~l 607 (779)
+.+|..+..++
T Consensus 72 e~~i~~~~~ql 82 (420)
T COG4942 72 ETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 131
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=86.54 E-value=57 Score=36.10 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQ 654 (779)
Q Consensus 590 ~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~q 654 (779)
.+.+..+..+++.+..+-.+.+-.+..+.++-.-...+..+|+++--.+..+.+++..+..+|.-
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~ 193 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKL 193 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444455554555555556666666666666666665555543
No 132
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.43 E-value=56 Score=35.91 Aligned_cols=142 Identities=18% Similarity=0.295 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 004019 377 FEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALV 456 (779)
Q Consensus 377 ~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~ 456 (779)
+..|++...=|-|+. .+. +.=...++..+..+..++..|...++.. ..++..+...-
T Consensus 130 ~aRl~aK~~WYeWR~-~ll----------------~gl~~~L~~~~~~L~~D~~~L~~~~~~l------~~~~~~l~~~~ 186 (325)
T PF08317_consen 130 YARLEAKKMWYEWRM-QLL----------------EGLKEGLEENLELLQEDYAKLDKQLEQL------DELLPKLRERK 186 (325)
T ss_pred HHHHHHHHHHHHHHH-HHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 445677777777775 221 1122344444444444444444444332 23444455555
Q ss_pred hccHHHHHHHHHHHHHhH-HHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004019 457 SSFPEDMSAMQRQLSKYK-EAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI 535 (779)
Q Consensus 457 ~sl~~~i~~L~~e~~r~k-~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ 535 (779)
+.|..++..|+.-+...- ....++..++.++.+....+..+..++..+..++..-...|..+..++..+.....+++-+
T Consensus 187 ~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 187 AELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566655555443322 2335566677777777777777766777777777777777778888877777777777766
Q ss_pred HHHHhh
Q 004019 536 LDMYRR 541 (779)
Q Consensus 536 ld~~~~ 541 (779)
++..++
T Consensus 267 ~~~~r~ 272 (325)
T PF08317_consen 267 REECRG 272 (325)
T ss_pred HHHhcC
Confidence 665544
No 133
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=86.07 E-value=40 Score=33.91 Aligned_cols=68 Identities=9% Similarity=0.146 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019 707 RIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE 774 (779)
Q Consensus 707 ~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~ 774 (779)
.+......+..........++.++..+-.....+.-+++.+..|....+..+..+.....++-.++-.
T Consensus 127 ~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~e 194 (205)
T KOG1003|consen 127 SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKE 194 (205)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333344444444444444444444444444444433
No 134
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.00 E-value=1.1e+02 Score=38.75 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=7.7
Q ss_pred HHHHhhhhhhHHHHHHHHHH
Q 004019 152 MEEDRETGIPRTKNIVSNIL 171 (779)
Q Consensus 152 ~e~~L~~r~~~tk~~l~~l~ 171 (779)
|..-|......-+.++..|+
T Consensus 145 ~~~fl~~~~~er~~il~~l~ 164 (908)
T COG0419 145 FDAFLKSKPKERKEILDELF 164 (908)
T ss_pred HHHHHhcCcHHHHHHHHHHh
Confidence 33333333333333444444
No 135
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.90 E-value=54 Score=35.21 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHHHhHH--------HhHHHHHHHHhHHhHHHHH
Q 004019 458 SFPEDMSAMQRQLSKYKE--------AALDIHILRADVLSLTNVL 494 (779)
Q Consensus 458 sl~~~i~~L~~e~~r~k~--------~~~e~~~l~~e~~~l~~~~ 494 (779)
.|+.+|.+|..++...|- ...++..++....++...+
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~l 47 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSL 47 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888877766542 3344555555555555444
No 136
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.84 E-value=50 Score=34.91 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004019 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e 271 (779)
|+-|+..|...++.|......++-+++. .+..+.-|+|+|..+...++..+-.+-+++++
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~-------Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQV-------KESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544 58888889999998888888888888887753
No 137
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.68 E-value=99 Score=38.03 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004019 669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV 748 (779)
Q Consensus 669 E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~ 748 (779)
........+..+..++..++..+...+.+++.....+...+..+..+..++..+.+-......++..++.....++..+.
T Consensus 590 ~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 590 EKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445666778888888888888888888888888888888888888888888777777777777777666666666655
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 004019 749 QVRGSLEESQSKVYKSRLT 767 (779)
Q Consensus 749 elr~~le~~e~~l~e~~~~ 767 (779)
++...+..+..++..+...
T Consensus 670 ~~e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 670 DLEAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444433
No 138
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.94 E-value=64 Score=35.33 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019 636 ETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (779)
Q Consensus 636 e~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~ 668 (779)
+++....+.|+.-...|...++..+++.-.+..
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~ 179 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRD 179 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666666666666665554444443
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.52 E-value=35 Score=41.73 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 624 KNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDM 703 (779)
Q Consensus 624 ~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~ 703 (779)
..+..+.|..-|+.+..-.+.+...-..+++.+....-. +-. +. +....+.+.+..++..+...++..+.
T Consensus 591 l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~---LS~----AE---r~~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 591 LRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV---LSE----AE---REFKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666555444444444321110 100 11 13344555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019 704 KAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV 761 (779)
Q Consensus 704 ~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l 761 (779)
++.....++. .+..........-..+.+.++.-+.+....|.++..++..+...+
T Consensus 661 k~~~Q~~~i~---~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 661 KLDYQQRQIE---SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHh---ccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555433322 222222222334556667777777777777777766655555443
No 140
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.24 E-value=98 Score=36.78 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhhHH
Q 004019 559 AWAHVHSLKSSLDE 572 (779)
Q Consensus 559 ~~~e~~~Lk~~L~e 572 (779)
++.++..+++.|.+
T Consensus 166 ~~~~~~~~~~~L~~ 179 (563)
T TIGR00634 166 LYQAWLKARQQLKD 179 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 141
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=84.17 E-value=1e+02 Score=36.93 Aligned_cols=176 Identities=12% Similarity=0.142 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-
Q 004019 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA- 673 (779)
Q Consensus 595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~- 673 (779)
.+......++.+...+...+.-+.+.+.+... .|.+.|..+..|...+...+.++-+....+.-+.--++. ++-.
T Consensus 384 rAqea~~~lqqq~~~aee~Lk~v~eav~S~q~---~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ar-k~Ala 459 (739)
T PF07111_consen 384 RAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ---WLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMAR-KLALA 459 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHH-HHHHH
Confidence 33333334444444444443334443333332 577888888888888888888888776666554433222 1111
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 674 -----------------RQLQDALLMDKHMMESEIQQANASL--------NFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728 (779)
Q Consensus 674 -----------------~q~~~~l~~ek~~le~el~~~~~~i--------e~~~~~i~~~ee~lk~l~~~~~~leeel~~ 728 (779)
...+.-++++-..+..+++..-.-| +.....+..+.+....|...+....+.+..
T Consensus 460 qlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~ 539 (739)
T PF07111_consen 460 QLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAE 539 (739)
T ss_pred HHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111123444444444433211111 111222233333344444444444444555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH-HHHHHHHHHHHH
Q 004019 729 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY-KSRLTLMELQIE 774 (779)
Q Consensus 729 ~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~-e~~~~l~E~~~~ 774 (779)
+...++..+....+.......++..+..-+..+. .++.+++++-..
T Consensus 540 l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsr 586 (739)
T PF07111_consen 540 LEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESR 586 (739)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666555444 445555554443
No 142
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.09 E-value=77 Score=35.43 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHH
Q 004019 421 EIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK 472 (779)
Q Consensus 421 ~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r 472 (779)
+|-++|.+.=+|...+++ |-..|+++|=++|..|..+.+-
T Consensus 180 ~leQLRre~V~lentlEQ------------EqEalvN~LwKrmdkLe~ekr~ 219 (552)
T KOG2129|consen 180 TLEQLRREAVQLENTLEQ------------EQEALVNSLWKRMDKLEQEKRY 219 (552)
T ss_pred hHHHHHHHHHHHhhHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666555543 4558899999999999887754
No 143
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.77 E-value=1.2e+02 Score=37.37 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004019 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 344 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l 344 (779)
.+..|+.+..-++...++|-.||+--+--...-...+..+...+
T Consensus 266 ~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 266 RLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999888
No 144
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=83.57 E-value=24 Score=38.87 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004019 317 SHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNM 396 (779)
Q Consensus 317 ~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~ 396 (779)
+.-+.||++..+-...|..-.+.|+..+.- .|.=.++.||.||--+-+-...+.
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~kr-------------------------dy~fi~etLQEERyR~erLEEqLN- 316 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKR-------------------------DYKFIAETLQEERYRYERLEEQLN- 316 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 344667777777777777777777666431 222233457888877666654454
Q ss_pred hhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHH
Q 004019 397 KIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQL 470 (779)
Q Consensus 397 ~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~ 470 (779)
+..++++.-+++++..++..|...+=.-- +-..++..-+++++.||..|+.+.
T Consensus 317 --dlteLqQnEi~nLKqElasmeervaYQsy-------------------ERaRdIqEalEscqtrisKlEl~q 369 (455)
T KOG3850|consen 317 --DLTELQQNEIANLKQELASMEERVAYQSY-------------------ERARDIQEALESCQTRISKLELQQ 369 (455)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666666665554442222 222345556677777776665433
No 145
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.57 E-value=57 Score=33.50 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=10.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Q 004019 621 LKSKNEEIEAYLSEIETIGQSYDD 644 (779)
Q Consensus 621 l~~~~~e~eaL~~Eie~l~~A~e~ 644 (779)
+.....+-+.+++++..+..+|.+
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsd 94 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSD 94 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHH
Confidence 333334444444444444444444
No 146
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.24 E-value=36 Score=30.94 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Q 004019 680 LLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQS 759 (779)
Q Consensus 680 l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~ 759 (779)
|......+..++..++..++..+.....+..+-..|......+..+...+.+.+..++.++.++-..+.+-+......+.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777777777777777777777777777777777777777777777777777777777777777767777
Q ss_pred HHHHHHHHHHHHHHHH
Q 004019 760 KVYKSRLTLMELQIEL 775 (779)
Q Consensus 760 ~l~e~~~~l~E~~~~l 775 (779)
++-..+...+...+.|
T Consensus 87 r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 87 RLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHH
Confidence 7766666666555443
No 147
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.20 E-value=94 Score=35.77 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 663 NIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728 (779)
Q Consensus 663 ~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~ 728 (779)
+.+|+++-+-++..+..+.-+++.+..-++...-.-+....+.+.++++.-.+...+...++++.-
T Consensus 235 ~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 235 NSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455556666667777776666666666667777788888888888888888877654
No 148
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=83.16 E-value=74 Score=34.54 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=79.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie 699 (779)
.++..+.+...|+.|...+......+.++-..|+. |-...+.. ++..+..|..++..-..+...-+.+|.
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~------dcv~QL~~----An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVL------DCVKQLSE----ANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHH------HHHHHhhh----cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444778888888888877777776666665552 22333444 555555566665555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019 700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 700 ~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~ 771 (779)
.+...+-.+..+++.+...... +.+.+...+..=..+..++.+++.+...+..-+++.+..+..+
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEe-------L~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEE-------LQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555544333 3344444444444466667777777777777777766665544
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.07 E-value=62 Score=36.59 Aligned_cols=101 Identities=14% Similarity=0.226 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRG 752 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~ 752 (779)
.++.+..+..+...++.....+..........+..+..+++.+..++....++-..+......++.++.+++...++..
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~- 430 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL- 430 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Confidence 4444555666666666666666666666666777777777777777777776666677777777777666655554444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 004019 753 SLEESQSKVYKSRLTLMELQIELV 776 (779)
Q Consensus 753 ~le~~e~~l~e~~~~l~E~~~~le 776 (779)
...+.++.+++..+..+-..++
T Consensus 431 --~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 431 --GSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred --HHHHHHHHHHHHHHHhHheehh
Confidence 3445566666666666554443
No 150
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.89 E-value=69 Score=34.02 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQ 737 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r 737 (779)
....++..|+..-..++..++.+......++..+..|..+......-+..+......+.
T Consensus 152 ~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~ 210 (265)
T COG3883 152 QQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASAL 210 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444444444444444445555555555555555555555554444444333333333
No 151
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.78 E-value=1.1e+02 Score=36.06 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=20.0
Q ss_pred hccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhH
Q 004019 457 SSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490 (779)
Q Consensus 457 ~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l 490 (779)
.++..++..++-.+.. ..+++..++..+.++
T Consensus 105 ~sl~~e~a~lk~~l~e---~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQE---LDQELRRLRRQLEEL 135 (511)
T ss_pred ccccchhHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 5667777777665544 556677777766655
No 152
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.72 E-value=1e+02 Score=35.84 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019 711 QLRFCLDQAQRLAEDRSQNSANLENTQKR---LSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE 774 (779)
Q Consensus 711 ~lk~l~~~~~~leeel~~~~~~le~~r~~---~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~ 774 (779)
.+..+..++..+...+..+...++.++.. +...+.++..|++..+..+..+..+-.++.+.++.
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444443 33566677788888888888888888887776654
No 153
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.10 E-value=76 Score=37.39 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=13.1
Q ss_pred HHHHHHHHhhHHHHHHHHhhhHHHH
Q 004019 604 RQKLEAFKRDMVSLSDALKSKNEEI 628 (779)
Q Consensus 604 ~~~l~~~~r~~~~l~~~l~~~~~e~ 628 (779)
|--|.++.+....++..|...+...
T Consensus 344 RDALAAA~kAY~~yk~kl~~vEr~~ 368 (652)
T COG2433 344 RDALAAAYKAYLAYKPKLEKVERKL 368 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555444443
No 154
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=81.95 E-value=1e+02 Score=35.18 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK 704 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~ 704 (779)
+.+-.+...|||.+....-+++ .. --+.+-+..+++.+=+|++++...++++.+..+-.++-.+-..+-..+..
T Consensus 525 e~e~~a~~~E~eklE~el~~ln---L~---s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~ 598 (622)
T COG5185 525 ERELVAQRIEIEKLEKELNDLN---LL---SKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKIN 598 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---hh---ccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555666677777755333321 11 22334455666777788888888899999999988888876666666666
Q ss_pred HHHHHHHH
Q 004019 705 AARIENQL 712 (779)
Q Consensus 705 i~~~ee~l 712 (779)
|...-+.+
T Consensus 599 IQssledl 606 (622)
T COG5185 599 IQSSLEDL 606 (622)
T ss_pred HHhhHHHH
Confidence 65444333
No 155
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=81.79 E-value=96 Score=34.87 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 681 LMDKHMMESEIQQANASLNFFDMKAA 706 (779)
Q Consensus 681 ~~ek~~le~el~~~~~~ie~~~~~i~ 706 (779)
..+...+..++..+...+......+.
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 156
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.54 E-value=14 Score=37.50 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004019 683 DKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQ 749 (779)
Q Consensus 683 ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~e 749 (779)
........+..+...+..+...+..+++.++........+.+|+..+.-.+-....++..++.+..+
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444444333333333333333333333333
No 157
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.50 E-value=53 Score=31.69 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=48.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 651 QLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNS 730 (779)
Q Consensus 651 rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~ 730 (779)
+-......+.+....+.+|-......+..|......++.++..+......+...+..+...++....++.++..-+....
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444445555555555555555555555555555555555555555555555555554444433
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHh
Q 004019 731 ANLENTQKRLSDVRKSSVQVRGS 753 (779)
Q Consensus 731 ~~le~~r~~~~e~e~~l~elr~~ 753 (779)
..+..-.++ .+.++..|+.+
T Consensus 129 tq~~~e~rk---ke~E~~kLk~r 148 (151)
T PF11559_consen 129 TQYEHELRK---KEREIEKLKER 148 (151)
T ss_pred HHHHHHHHH---HHHHHHHHHHH
Confidence 333332222 44444444433
No 158
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.15 E-value=84 Score=33.81 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHH
Q 004019 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIE 636 (779)
Q Consensus 588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie 636 (779)
.|...|....++..-|..+|+..+...+.|...+.+-.....+-+.+-+
T Consensus 60 qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d 108 (305)
T PF14915_consen 60 QYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD 108 (305)
T ss_pred HHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4666677777777777777777655555555544444444444444443
No 159
>PLN03188 kinesin-12 family protein; Provisional
Probab=81.09 E-value=1.8e+02 Score=37.51 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHhhhhhhhhhHHHhhHHHH----HHHHHHHHHHHHHHHH
Q 004019 364 EKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKI-DLVDVFRRSSAVTDSKIADLGIEI----QKQIDEKNRIEMRLEE 438 (779)
Q Consensus 364 ~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~-E~~e~~~~~~~~~~~~~~~lE~~l----~rir~erd~L~~e~e~ 438 (779)
..|+.+++..+.++++|+.|.+.-+.--.|+.-.. .+...+.|++. ++++|+-.- +|-|.-++ -..++..
T Consensus 1068 eelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e----~ya~l~ek~~~ll~~hr~i~e-gi~dvkk 1142 (1320)
T PLN03188 1068 EELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLE----QYADLEEKHIQLLARHRRIQE-GIDDVKK 1142 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 55777888889999999999877765544442000 02222223321 223332221 12222221 2234444
Q ss_pred HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHH
Q 004019 439 ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (779)
Q Consensus 439 ~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~ 475 (779)
+.+.+|.+.. + -..+++|..+|..|+.|-.+-+.
T Consensus 1143 aaakag~kg~--~-~~f~~alaae~s~l~~ereker~ 1176 (1320)
T PLN03188 1143 AAARAGVRGA--E-SKFINALAAEISALKVEREKERR 1176 (1320)
T ss_pred HHHHhccccc--h-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554211 1 25567777888888777655333
No 160
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.94 E-value=76 Score=33.15 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004019 680 LLMDKHMMESEIQQANASLNF 700 (779)
Q Consensus 680 l~~ek~~le~el~~~~~~ie~ 700 (779)
|..++.....+|..++.+|+.
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 161
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=80.50 E-value=79 Score=33.07 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 580 KTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSD-----ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQ 654 (779)
Q Consensus 580 k~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~-----~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~q 654 (779)
+..+...+.+++.+..+-.++..++..+...+........ .+...+.. |...-..+.....+++..|..+..
T Consensus 34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~---l~~~~~~L~~~q~~l~~~~~~l~~ 110 (240)
T PF12795_consen 34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQR---LSQEQAQLQELQEQLQQENSQLIE 110 (240)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445577788888888888888888877554111111 11111111 222222233334444444444444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 655 QITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANAS--LNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN 732 (779)
Q Consensus 655 q~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~--ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~ 732 (779)
....-+.+. +.+......+..+...+...... -.-.....-.+.-....+..+...++-++......
T Consensus 111 ~~~~p~~aq-----------~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~r 179 (240)
T PF12795_consen 111 IQTRPERAQ-----------QQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNR 179 (240)
T ss_pred HHccHHHHH-----------HHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence 444333322 22223333333333333321000 01112333344444555555666666666555555
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004019 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQI 773 (779)
Q Consensus 733 le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~ 773 (779)
.+-++.....+...+..+...+..++..++..+..-+|..+
T Consensus 180 q~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~ 220 (240)
T PF12795_consen 180 QELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAV 220 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666666666666666655555554443
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.36 E-value=38 Score=37.06 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 004019 734 ENTQKRLSDVRKSSVQVRGSLEESQSKVY 762 (779)
Q Consensus 734 e~~r~~~~e~e~~l~elr~~le~~e~~l~ 762 (779)
-.+...+.++..+...+..+++....++.
T Consensus 102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 102 NELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444333
No 163
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.56 E-value=60 Score=31.17 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=46.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 617 LSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANA 696 (779)
Q Consensus 617 l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~ 696 (779)
....|+....+...|..-|+.+..-.+..++....+.. ...+ +...+.+|..++..+...+..+..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~----------daEn----~k~eie~L~~el~~lt~el~~L~~ 73 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLIL----------DAEN----SKAEIETLEEELEELTSELNQLEL 73 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH----------HHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666777777776666555554443333321 1111 333444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 697 SLNFFDMKAARIENQLRFCLDQAQRLA 723 (779)
Q Consensus 697 ~ie~~~~~i~~~ee~lk~l~~~~~~le 723 (779)
+++........+...+...+.++..++
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444444444444443
No 164
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.36 E-value=19 Score=30.57 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=35.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 653 LQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD 717 (779)
Q Consensus 653 ~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~ 717 (779)
...+.++|+....||.|+=+.......+..-+..|...+..+...+..+...+...+..+..+..
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666655555555555555555555555555555555544444444444433
No 165
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.22 E-value=24 Score=29.58 Aligned_cols=64 Identities=22% Similarity=0.156 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~l 268 (779)
|..++..||..++.+--+...+...+..+......+...+...-.+..++..+++...+.|+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777777777776666666666666666555556666666666666666666666655544
No 166
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.05 E-value=25 Score=35.54 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 647 TQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDR 726 (779)
Q Consensus 647 eqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel 726 (779)
..++.+.+++........++..+-......+..+..+...+..++..+...+......+..+-+.+-.+.-+...+++.+
T Consensus 88 r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 88 RSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333333555555666666666666666666666666666666666666666666666555
Q ss_pred HHHHHHHH
Q 004019 727 SQNSANLE 734 (779)
Q Consensus 727 ~~~~~~le 734 (779)
..+.....
T Consensus 168 ~~l~~En~ 175 (194)
T PF08614_consen 168 RKLEEENR 175 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 167
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=78.02 E-value=99 Score=32.81 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004019 730 SANLENTQKRLSDVRKSSVQVRGSLEES 757 (779)
Q Consensus 730 ~~~le~~r~~~~e~e~~l~elr~~le~~ 757 (779)
...++.+..+..++...-......+..+
T Consensus 219 ~~~l~~~~~k~~~l~~~~~~~~~~L~~a 246 (264)
T PF06008_consen 219 QKNLEDLEKKKQELSEQQNEVSETLKEA 246 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 168
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.99 E-value=59 Score=30.16 Aligned_cols=99 Identities=22% Similarity=0.261 Sum_probs=64.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 616 SLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQAN 695 (779)
Q Consensus 616 ~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~ 695 (779)
.+...|..+..+...+ ++.+..-|+.+......+-......+.+...-...++++.+....-...+.....++..+.
T Consensus 11 ~~~~~l~~kr~e~~~~---~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 11 LVQLALDTKREEIERR---EEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333 3444555666666666666666666666666666777777777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004019 696 ASLNFFDMKAARIENQLRFCLD 717 (779)
Q Consensus 696 ~~ie~~~~~i~~~ee~lk~l~~ 717 (779)
..+..+...+..+++.+..+..
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777766543
No 169
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.85 E-value=85 Score=31.91 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 004019 600 IADMRQKLEA 609 (779)
Q Consensus 600 i~~L~~~l~~ 609 (779)
|.+++..++.
T Consensus 21 l~elq~~l~~ 30 (194)
T PF15619_consen 21 LAELQRKLQE 30 (194)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 170
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=77.78 E-value=1.2e+02 Score=33.68 Aligned_cols=154 Identities=15% Similarity=0.128 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 004019 581 TAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYL-------SEIETIGQSYDDMQTQNQQLL 653 (779)
Q Consensus 581 ~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~-------~Eie~l~~A~e~lqeqn~rl~ 653 (779)
.++.-.+.+++-++...++-.+|+..|...--....+.++..+.-.+-..|. ++.-.+..-.+.+..+-..+.
T Consensus 127 ~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la 206 (499)
T COG4372 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA 206 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666666666666665554444445444444333333333 344334333333333333333
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 654 QQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANL 733 (779)
Q Consensus 654 qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~l 733 (779)
...+-......++.. .......+..++......+.+....|..-...|..-+.+++.+......++.+...++..|
T Consensus 207 ~r~~a~q~r~~ela~----r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yy 282 (499)
T COG4372 207 TRANAAQARTEELAR----RAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYY 282 (499)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333 3333334455555566666665566666666666666666666666666666666655555
Q ss_pred HHHHH
Q 004019 734 ENTQK 738 (779)
Q Consensus 734 e~~r~ 738 (779)
..+.+
T Consensus 283 Q~y~~ 287 (499)
T COG4372 283 QAYVR 287 (499)
T ss_pred HHHHH
Confidence 54443
No 171
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=77.72 E-value=1.7e+02 Score=35.47 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=20.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDD 661 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd 661 (779)
+|..+-..-+.|.+=-|.+....+..-+.|.++...+.++|+
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~ 483 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQ 483 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444455545555555555544444
No 172
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=77.63 E-value=1.3e+02 Score=34.10 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhcc
Q 004019 329 GRIKVLQQLYNLQNTLK 345 (779)
Q Consensus 329 e~~~l~~e~~~Lk~~l~ 345 (779)
|.--|+++|++|+.+|.
T Consensus 223 EkE~Ll~EIq~Lk~qL~ 239 (488)
T PF06548_consen 223 EKEVLLEEIQDLKSQLQ 239 (488)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34456777777777766
No 173
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.25 E-value=42 Score=28.50 Aligned_cols=66 Identities=14% Similarity=0.271 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 004019 703 MKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTL 768 (779)
Q Consensus 703 ~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l 768 (779)
..+..-++++..|...-..+...-..+...+-.+|..+.+.+..+..++.+++..+..+..++..+
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666666666666666666666666666666666666666666666666666665554
No 174
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.13 E-value=47 Score=31.28 Aligned_cols=69 Identities=12% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 675 QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDV 743 (779)
Q Consensus 675 q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~ 743 (779)
+...++...|..+..+|..+-..++.+......+.++...+...+..+..++......+..+..++.++
T Consensus 54 ~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 54 QVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555555555555444444444444444333
No 175
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=75.99 E-value=1.4e+02 Score=33.53 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 596 AEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (779)
Q Consensus 596 ~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~ 653 (779)
-++-+.+|...+.+..+....|.+++.....+..++.+=+-....+..++++.|..+.
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888888888999888888888888888888777665
No 176
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.90 E-value=1.4e+02 Score=34.51 Aligned_cols=139 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 004019 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEAS 440 (779)
Q Consensus 361 ~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~ 440 (779)
.++..+..+...+...+..++...........++....+....+. ..++..++..-.++..+-.-|-.++-+.+
T Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~------~ek~~~l~~~~~~L~~~F~~LA~~ile~k 126 (475)
T PRK10361 53 TQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA------DDKIRQMINSEQRLSEQFENLANRIFEHS 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCchhHHHHHHHHHhccHHHHHHHHHHH-HHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHh
Q 004019 441 REPGRKEIIAEFRALVSSFPEDMSAMQRQL-SKYKEAALDIHILRADVLSLTNVLERKVKECETLL 505 (779)
Q Consensus 441 ~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~-~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~ 505 (779)
...=.......+..|+.=+.+.|...+..| .-+++...+...|+.++..|...-.+...+...|.
T Consensus 127 ~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt 192 (475)
T PRK10361 127 NRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLT 192 (475)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=75.62 E-value=1.7e+02 Score=34.16 Aligned_cols=156 Identities=14% Similarity=0.101 Sum_probs=88.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 616 SLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNI---KLVLEGVRARQLQDALLMDKHMMESEIQ 692 (779)
Q Consensus 616 ~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~---kl~~E~~k~~q~~~~l~~ek~~le~el~ 692 (779)
.+..-|.-.+.....|..||+.+.+.|==-...-+....-..+++.+.. .+-..--...+.|..+....+.+...+.
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~ 392 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALT 392 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 3444677778888899999999988873222222211112222222111 1111111144556677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019 693 QANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNS----------------ANLENTQKRLSDVRKSSVQVRGSLEE 756 (779)
Q Consensus 693 ~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~----------------~~le~~r~~~~e~e~~l~elr~~le~ 756 (779)
.++....+....+..+.+........+..+...+.... ..++.+-..+.++..++.+....++.
T Consensus 393 ~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~ 472 (570)
T COG4477 393 DIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEA 472 (570)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHH
Confidence 77777777777777777777777666666666655432 22334444555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 004019 757 SQSKVYKSRLTLMEL 771 (779)
Q Consensus 757 ~e~~l~e~~~~l~E~ 771 (779)
+...+......++.+
T Consensus 473 v~~~v~~a~~~m~~l 487 (570)
T COG4477 473 VSALVDIATEDMNTL 487 (570)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444433
No 178
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.61 E-value=66 Score=35.92 Aligned_cols=69 Identities=7% Similarity=0.098 Sum_probs=45.4
Q ss_pred HHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHH
Q 004019 483 LRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLA 551 (779)
Q Consensus 483 l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~ 551 (779)
|+..++.+..-+......+.....+|.....-|..+..++..+.+....+|.-++-.....+|.+.++.
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~ 332 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVK 332 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 444444554444444445555566666666677777777777777777777777777777888888777
No 179
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=74.79 E-value=1.4e+02 Score=32.76 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 705 i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
+.-..+++..++..+..-.+-.......++.+-+++..++++...++.+.+.+..-+-+.
T Consensus 218 L~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m 277 (309)
T PF09728_consen 218 LNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM 277 (309)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333333333333333333334445555555555556666666666666555544433
No 180
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=74.57 E-value=86 Score=30.76 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=80.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh-------ccCCchhhhhhhchHHHHHHHHHHHHHHHHHhH
Q 004019 152 MEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD-------LQDGGSKQKASSNLQSEVKNLRLALMDLHLKHK 224 (779)
Q Consensus 152 ~e~~L~~r~~~tk~~l~~l~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~l~~E~~~L~~~~~~L~~k~k 224 (779)
....|+.+.......+..+....+......+-....|.+. ..++.+ ..-.+...++...+.+..+|.
T Consensus 16 ~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~------f~i~~~~~~~~~r~~l~~~~~ 89 (158)
T PF09486_consen 16 RERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAP------FSIDEYLALRRYRDVLEERVR 89 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCC------ccHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566665555554444444444333322 011111 134577888899999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 225 SLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (779)
Q Consensus 225 ~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk 269 (779)
.+..++..+++.+.....++......|-...+.++.+..++++++
T Consensus 90 ~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~ 134 (158)
T PF09486_consen 90 AAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLR 134 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887
No 181
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=74.32 E-value=96 Score=30.78 Aligned_cols=126 Identities=13% Similarity=0.200 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 631 YLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIK---LVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAAR 707 (779)
Q Consensus 631 L~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~k---l~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~ 707 (779)
..++|+.+.--+--++.+...+..++..+++..-- ..||.++..+ ..+...++.-..++..+...+......+..
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien--~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIEN--QQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666654433 3344444333 255666666667777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019 708 IENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ 758 (779)
Q Consensus 708 ~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e 758 (779)
.-+++..+......+..++......+...+..+..+......++.....+.
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766666666666666665555555554444433
No 182
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=74.27 E-value=2.7e+02 Score=35.94 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 647 TQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEI 691 (779)
Q Consensus 647 eqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el 691 (779)
+.|..+-+.+...-.....+..+.....+.+..+......+.+++
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555444444444
No 183
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.06 E-value=77 Score=29.61 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSL 617 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l 617 (779)
.|+..+.|+..|+..+.......+.+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l 49 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDEL 49 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555553333333
No 184
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.99 E-value=1.7e+02 Score=33.46 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=33.0
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~ 476 (779)
...+..+=++.+++..+-|.|.-.+.++ .+|-.-+..+..+...|++....|-.+
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea----------~k~s~~i~~l~ek~r~l~~D~nk~~~~ 317 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLYEKIQEA----------MKISQKIKTLREKWRALKSDSNKYENY 317 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455666667777777777776666433 334445556666666666666555443
No 185
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.45 E-value=3.2e+02 Score=36.50 Aligned_cols=193 Identities=12% Similarity=0.144 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc----------cccccChhHHHHHHHHHHHHHHHH
Q 004019 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----------KCLSSSKAFLSVKNQLEKSKSEVF 371 (779)
Q Consensus 302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~----------~~i~~S~~yk~L~~q~~~l~~~~~ 371 (779)
++.....+++.......-..++..+......+.+....+......+ +.++.-+.++.+-.++..++..+.
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLS 523 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 4555566666666666666677777777777777777666654432 122222334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh----hchHHHHhhhhhhhhhHHHhhHHHHH-------HHHHHHHHHHHHHHHHh
Q 004019 372 KYQALFEKLQVEKDNLAWRETELNMK----IDLVDVFRRSSAVTDSKIADLGIEIQ-------KQIDEKNRIEMRLEEAS 440 (779)
Q Consensus 372 ~~r~~~e~Lq~er~~~~~~~~E~~~~----~E~~e~~~~~~~~~~~~~~~lE~~l~-------rir~erd~L~~e~e~~~ 440 (779)
.+...+ +..+.. .+.+.++... ....+.........+..+..++..+. .+|...++|...+.+..
T Consensus 524 ~l~~~~---~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~ 599 (1486)
T PRK04863 524 ELEQRL---RQQQRA-ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599 (1486)
T ss_pred HHHHHH---HHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443321 112211 1111333211 11112222222233445555555554 45555555666665544
Q ss_pred cCCCc----hhHHH----HHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhH
Q 004019 441 REPGR----KEIIA----EFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKV 498 (779)
Q Consensus 441 ~~~~~----~~~~~----E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~ 498 (779)
.-.+. .+.+. ..-....+-+.=+..|+..+.++++...+.+.+.+....+...+....
T Consensus 600 ~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~ 665 (1486)
T PRK04863 600 ARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLS 665 (1486)
T ss_pred HhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44443 12222 222234455566677777788888888888888888777777775443
No 186
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=73.17 E-value=1.3e+02 Score=31.66 Aligned_cols=123 Identities=17% Similarity=0.163 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccCc-cccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 306 ESVHKELMDQASHQ----LLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL 380 (779)
Q Consensus 306 ~~~~eE~~~la~~R----l~ELe~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~L 380 (779)
+..+.+..+.|..| ...|-.-.+|.+.++.++..|+..+.-- -.++++.+--.++--|..|+.++++....++.+
T Consensus 117 e~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~ 196 (330)
T KOG2991|consen 117 EEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEA 196 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554 3456666778888888888888775532 223333333344555677788888888888888
Q ss_pred HHHHHHHH----------------HHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 004019 381 QVEKDNLA----------------WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLE 437 (779)
Q Consensus 381 q~er~~~~----------------~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e 437 (779)
|.+..++. .-..|. .|+-++. ++.+|.+|+..|+=-.+..++|..-++
T Consensus 197 QnelsAwkFTPdS~tGK~LMAKCR~L~qEN------eElG~q~---s~Gria~Le~eLAmQKs~seElkssq~ 260 (330)
T KOG2991|consen 197 QNELSAWKFTPDSKTGKMLMAKCRTLQQEN------EELGHQA---SEGRIAELEIELAMQKSQSEELKSSQE 260 (330)
T ss_pred HhhhheeeecCCCcchHHHHHHHHHHHHHH------HHHHhhh---hcccHHHHHHHHHHHHhhHHHHHHhHH
Confidence 88876651 111233 2333222 378888888888876666666655443
No 187
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.76 E-value=1.1e+02 Score=30.65 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=8.3
Q ss_pred HHHhHHHHHHhHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~ 764 (779)
+...+..++..+..+...+.+.
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 188
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=72.09 E-value=1.7e+02 Score=33.11 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 004019 683 DKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY 762 (779)
Q Consensus 683 ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~ 762 (779)
+++.+..+=..+-..+......-..+...+..+......+.++.......+..+.+...+.+..+..+..+.+-.+.++.
T Consensus 184 e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qld 263 (447)
T KOG2751|consen 184 ELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLD 263 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 33333333334444455555555566667777777888888888888888999999999999999999888887777766
Q ss_pred HHH
Q 004019 763 KSR 765 (779)
Q Consensus 763 e~~ 765 (779)
-+.
T Consensus 264 kL~ 266 (447)
T KOG2751|consen 264 KLR 266 (447)
T ss_pred HHH
Confidence 554
No 189
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.47 E-value=1.4e+02 Score=31.30 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 694 ANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRK 745 (779)
Q Consensus 694 ~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~ 745 (779)
+..+++.+.++-....+.|+....++..|+..+..........+..+..+..
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444333333
No 190
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.70 E-value=1.3e+02 Score=30.93 Aligned_cols=22 Identities=5% Similarity=0.335 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 004019 598 AEIADMRQKLEAFKRDMVSLSD 619 (779)
Q Consensus 598 ~ei~~L~~~l~~~~r~~~~l~~ 619 (779)
+.-..+..+++.......+|..
T Consensus 52 a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 52 ADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 191
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=70.63 E-value=1.3e+02 Score=30.84 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 004019 512 VAEIHKLQAMVQDLTDSNLELKLILDMYRR 541 (779)
Q Consensus 512 ~~eik~Lr~q~~~l~e~~~elk~~ld~~~~ 541 (779)
..++..|+.....+.....+|..+++.|.+
T Consensus 22 E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek 51 (207)
T PF05010_consen 22 EEEEQELKKKYEELHKENQEMRKIMEEYEK 51 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 366778888888888888999999999976
No 192
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.13 E-value=2.9e+02 Score=34.59 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl 265 (779)
+...+......++.++++...+..+++.+++..-.+=-+=+.|...++.+..++..+++.|
T Consensus 437 l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 437 LESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666665555555666666666666666666655
No 193
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=70.00 E-value=1e+02 Score=29.17 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004019 714 FCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS 747 (779)
Q Consensus 714 ~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l 747 (779)
.|..+...+++++..+...+..+...-.=+..++
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444343333
No 194
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.67 E-value=1.7e+02 Score=31.81 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 004019 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~ 347 (779)
.+.+|...+.|+.+--.+=+..--.|-.+...|.-++..|+.+|.+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~ 124 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL 124 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 35667666666665555555555555566666666666666665544
No 195
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.51 E-value=1.2e+02 Score=33.03 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 004019 323 LKGLHDGRIKVLQQLYNLQNTL 344 (779)
Q Consensus 323 Le~l~~e~~~l~~e~~~Lk~~l 344 (779)
|.+|-.++..|..++..|+..|
T Consensus 221 LkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777666
No 196
>PRK10698 phage shock protein PspA; Provisional
Probab=69.37 E-value=1.5e+02 Score=30.83 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004019 594 AAAEAEIADMRQKLEAFKRDMVSLSD 619 (779)
Q Consensus 594 ~~~e~ei~~L~~~l~~~~r~~~~l~~ 619 (779)
..+-+.-..+..+++.......+|..
T Consensus 48 A~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 48 ARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555544
No 197
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.17 E-value=2.1e+02 Score=32.60 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=24.4
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l 775 (779)
.+.++..|++..+-.+..+..+-.++.+..+..
T Consensus 340 ~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~ 372 (444)
T TIGR03017 340 QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIEA 372 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677788888888888888888887776653
No 198
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.86 E-value=1.7e+02 Score=31.28 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 699 NFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 699 e~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
+.....+......+..+...+...++++..+...+..++.++.+++.....+...+..+..+++.+
T Consensus 196 e~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 196 EEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444445555555555555555555555555555555544444444433
No 199
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.58 E-value=2e+02 Score=32.14 Aligned_cols=82 Identities=6% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHhHHHHHH
Q 004019 686 MMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV------QVRGSLEESQS 759 (779)
Q Consensus 686 ~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~------elr~~le~~e~ 759 (779)
.+..++..+-..-......+..+.++.+..+..+..+..++..++..++..+.++.+.+..+. ..|..+..+..
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~ 342 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQ 342 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 334444444444555555566666666666666666666666666666666666666544433 34444444444
Q ss_pred HHHHHHHH
Q 004019 760 KVYKSRLT 767 (779)
Q Consensus 760 ~l~e~~~~ 767 (779)
.+.+...+
T Consensus 343 EI~qMdvr 350 (359)
T PF10498_consen 343 EIKQMDVR 350 (359)
T ss_pred HHHHhhhh
Confidence 44444433
No 200
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.82 E-value=3e+02 Score=33.40 Aligned_cols=18 Identities=11% Similarity=0.208 Sum_probs=8.0
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 004019 416 ADLGIEIQKQIDEKNRIEM 434 (779)
Q Consensus 416 ~~lE~~l~rir~erd~L~~ 434 (779)
-.++. +.+++.+.+.+..
T Consensus 179 lGl~~-~~~L~~dl~~~~~ 196 (650)
T TIGR03185 179 LGLDL-IDRLAGDLTNVLR 196 (650)
T ss_pred hCcHH-HHHHHHHHHHHHH
Confidence 33443 4445444444433
No 201
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.55 E-value=1.8e+02 Score=30.92 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004019 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQ 640 (779)
Q Consensus 588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~ 640 (779)
..+.....++.+|..|..+++.....++++++.+...+++...|..+|+.+..
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777888888888888887888888888888888888888888744
No 202
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.25 E-value=1.8e+02 Score=30.62 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004019 708 IENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQV 750 (779)
Q Consensus 708 ~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~el 750 (779)
+-+=+..|...+..+..-+-.+.+.+...++.|..+++.+..+
T Consensus 262 L~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 262 LYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455555555565555555544443
No 203
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.18 E-value=1.3e+02 Score=35.44 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 680 LLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQ 718 (779)
Q Consensus 680 l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~ 718 (779)
+....+.++.++..+...++.++..+..++.++..+...
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433
No 204
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=65.99 E-value=1.7e+02 Score=30.46 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019 711 QLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE 774 (779)
Q Consensus 711 ~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~ 774 (779)
..-.+..+...+..++..+...+...-....=......-+..++...+..+..++..++..+..
T Consensus 151 ~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 151 QRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444444444333333344455556666677777777777777766654
No 205
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.65 E-value=1.3e+02 Score=28.91 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
.+......+...+..+...+..+...+..++..+..+......+...+......+-..+..
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444333333333
No 206
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.27 E-value=3.2e+02 Score=33.31 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 004019 717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLT 767 (779)
Q Consensus 717 ~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~ 767 (779)
.+...+.-|+...-..+..++-++.+.+++..-|...+.+-+..+..++..
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eL 544 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLREL 544 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555555555444433
No 207
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.67 E-value=2e+02 Score=30.63 Aligned_cols=14 Identities=43% Similarity=0.437 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETI 638 (779)
Q Consensus 625 ~~e~eaL~~Eie~l 638 (779)
..+.+.|...|+.+
T Consensus 33 ~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 33 KEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445555444
No 208
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.53 E-value=1.3e+02 Score=30.92 Aligned_cols=15 Identities=7% Similarity=0.147 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQ 693 (779)
Q Consensus 679 ~l~~ek~~le~el~~ 693 (779)
.+..++..+..++..
T Consensus 97 ~le~el~~l~~~l~~ 111 (206)
T PRK10884 97 DLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 209
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.32 E-value=3.9e+02 Score=33.88 Aligned_cols=31 Identities=13% Similarity=0.317 Sum_probs=21.8
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004019 409 AVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (779)
Q Consensus 409 ~~~~~~~~~lE~~l~rir~erd~L~~e~e~~ 439 (779)
..++.++..++..+-|+...++.|...+...
T Consensus 405 ~elE~r~k~l~~sver~~~~~~~L~~~i~s~ 435 (1141)
T KOG0018|consen 405 AELEARIKQLKESVERLDKRRNKLAAKITSL 435 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777777777777777777777553
No 210
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.58 E-value=2e+02 Score=30.27 Aligned_cols=51 Identities=14% Similarity=0.024 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQA 719 (779)
Q Consensus 669 E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~ 719 (779)
|+-.....+..+..+++.++....++...++.+...+..++.++..+....
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555555555555555544444444333
No 211
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=62.20 E-value=1.6e+02 Score=28.86 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004019 700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQV 750 (779)
Q Consensus 700 ~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~el 750 (779)
.+...-..++..++.+...+...+.-..+....+.-+...+..+...+.++
T Consensus 102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444333
No 212
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=62.07 E-value=1.2e+02 Score=27.10 Aligned_cols=85 Identities=11% Similarity=0.134 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 004019 690 EIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLM 769 (779)
Q Consensus 690 el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~ 769 (779)
++..+...-+.+...+...-..+..+...+.++..++....+.|....+....+..+++-|+..+......+..++..-.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~ 83 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEK 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44445555555555566666666666677777777777777788888888888888888888888777777777766444
Q ss_pred HHHHH
Q 004019 770 ELQIE 774 (779)
Q Consensus 770 E~~~~ 774 (779)
++...
T Consensus 84 ~~~~~ 88 (96)
T PF08647_consen 84 EFVRK 88 (96)
T ss_pred HHHHH
Confidence 44433
No 213
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.93 E-value=1.9e+02 Score=29.50 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004019 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETI 638 (779)
Q Consensus 593 l~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l 638 (779)
|.....+|++++.+.....+.+.++.........-...+..|++.+
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL 74 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEEL 74 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445556666666666664444444433333333333333333333
No 214
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.68 E-value=2.6e+02 Score=30.62 Aligned_cols=119 Identities=13% Similarity=0.219 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004019 316 ASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (779)
Q Consensus 316 a~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~ 395 (779)
...|-.|-++|+-.|++|..++...+ ..|-..+...++|+..+-+.+++-.-||...+++.+...|.+
T Consensus 94 ~~e~q~e~~qL~~qnqkL~nqL~~~~------------~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 94 VEERQQESEQLQSQNQKLKNQLFHVR------------EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH------------HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Confidence 34455666666666666666665543 356667777778888888887777777777777776665553
Q ss_pred hhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHH
Q 004019 396 MKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK 472 (779)
Q Consensus 396 ~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r 472 (779)
| +.+.|-..|+.-++=--.|..+. .....|-+.++..++.-|+.|++-|+.
T Consensus 162 ---e--------------esq~LnrELaE~layqq~L~~ey---------Qatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 162 ---E--------------ESQTLNRELAEALAYQQELNDEY---------QATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred ---H--------------HHHHHHHHHHHHHHHHHHHHHHh---------hcccccchhhhHHHHHHHHHHHHHHHH
Confidence 1 11222222221111111222222 133344557788888888888887755
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.44 E-value=1e+02 Score=30.38 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=43.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~ 475 (779)
+.++.++...+..+..+.-.|.+++...... +++.++...+..+..++..|+..+..++.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~----~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSE----PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666666665543 55788889999999999999988887765
No 216
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=60.20 E-value=2.5e+02 Score=32.77 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 004019 707 RIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSR 765 (779)
Q Consensus 707 ~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~ 765 (779)
...+.++.+..++..+++|+.... .++..++..|..++..++.++..-...+..++
T Consensus 459 ~l~eeL~~a~~~i~~LqDEL~TTr---~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 459 SLEEELKEANQNISRLQDELETTR---RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555543333 23344555566666666666555555555444
No 217
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=60.08 E-value=2.3e+02 Score=29.87 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 701 FDMKAARIENQLRFCLDQAQRLAEDRSQNS 730 (779)
Q Consensus 701 ~~~~i~~~ee~lk~l~~~~~~leeel~~~~ 730 (779)
+...-..++..+..+...+..+..+.....
T Consensus 73 ~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke 102 (246)
T PF00769_consen 73 QEEEKEQLEQELREAEAEIARLEEESERKE 102 (246)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 218
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.08 E-value=3.1e+02 Score=31.31 Aligned_cols=31 Identities=10% Similarity=0.283 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHhHHH
Q 004019 446 KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (779)
Q Consensus 446 ~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~ 476 (779)
...++-+...+..+..+|.-|..+-..+|-+
T Consensus 292 eayLaKL~~~l~~~~~~~~~ltqqwed~R~p 322 (521)
T KOG1937|consen 292 EAYLAKLMGKLAELNKQMEELTQQWEDTRQP 322 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3777777788888888888888888777654
No 219
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.00 E-value=95 Score=32.81 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 241 KAKLNRLKGELESAVKELEECNCKLAALR 269 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~~~kkl~~lk 269 (779)
+.++..+..++++...=..+.+..|.++.
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555555555555554
No 220
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.88 E-value=2.4e+02 Score=29.92 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004019 706 ARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLME 770 (779)
Q Consensus 706 ~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E 770 (779)
..+..++..+..-+.....-.+....-....+..+.++......++.....+...|......+.+
T Consensus 188 ~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 188 NDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444444444444444444444444433
No 221
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.58 E-value=1.1e+02 Score=25.77 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 687 MESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAED 725 (779)
Q Consensus 687 le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leee 725 (779)
|+..+.++...++....++...+...+.|..........
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~ 41 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQ 41 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333
No 222
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=58.09 E-value=4.1e+02 Score=32.12 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSYD-DMQ----TQNQQLLQQITERDDYNIKLVLEGVRA 673 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~e-~lq----eqn~rl~qq~~e~dd~~~kl~~E~~k~ 673 (779)
.+..+..+...|..|+..-...|+ .++ +--.++..++.+++...+..-.|-.|+
T Consensus 550 ~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKa 608 (739)
T PF07111_consen 550 SLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKA 608 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777766666665 333 344556666666666555555555544
No 223
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.75 E-value=1.3e+02 Score=26.06 Aligned_cols=69 Identities=10% Similarity=0.218 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019 685 HMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEE 756 (779)
Q Consensus 685 ~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~ 756 (779)
+.+..+...+...+...+..-..++-++..-...+..+..-+..++...-.+|.. .|.+|..|+..++.
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~---YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ---YEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 3444444444444444555555555555555555555555555555555555555 56666666665544
No 224
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.89 E-value=1.8e+02 Score=29.29 Aligned_cols=86 Identities=20% Similarity=0.323 Sum_probs=44.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhH-HHHHHHHhHHhH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL-DIHILRADVLSL 490 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~-e~~~l~~e~~~l 490 (779)
...+..+...+..++.....|...++.+...-+...--..+-.-+..|..++..|+.++..|...-+ .+..++.++..+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455666666666666666666666665433332222223333445556677777777766554322 244455554444
Q ss_pred HHHHHhh
Q 004019 491 TNVLERK 497 (779)
Q Consensus 491 ~~~~~~~ 497 (779)
..+..+-
T Consensus 148 ~~~anrw 154 (188)
T PF03962_consen 148 KEAANRW 154 (188)
T ss_pred HHHHHHH
Confidence 4444443
No 225
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.58 E-value=1.3e+02 Score=29.58 Aligned_cols=92 Identities=27% Similarity=0.313 Sum_probs=62.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccc
Q 004019 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (779)
Q Consensus 202 ~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~ 281 (779)
...+..++..|+.++..|....+.+..++..+....+. .+|...+..+..++.....||..++... .
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~-----~--- 140 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGS-----K--- 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----C---
Confidence 34467788888888888888888888888887554433 4566677777777777777777776310 0
Q ss_pred cCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 004019 282 VLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL 320 (779)
Q Consensus 282 ~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl 320 (779)
+ .++.+...+...+..+......|.
T Consensus 141 -------------~-vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 141 -------------P-VSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred -------------C-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112356777777777777777665
No 226
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=56.30 E-value=2e+02 Score=27.94 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHH
Q 004019 687 MESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ------NSANLENTQKRLSDVRKSSVQVRGSLEESQSK 760 (779)
Q Consensus 687 le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~------~~~~le~~r~~~~e~e~~l~elr~~le~~e~~ 760 (779)
-..+...+...+..........+.+|..+..........+.. ....+-++...+.-++..+.+.+..+.....+
T Consensus 14 ~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ 93 (148)
T COG2882 14 AKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQ 93 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555556666665555555544322 22344677777777888888888888877777
Q ss_pred HHHHHHHHHHHHHHHh
Q 004019 761 VYKSRLTLMELQIELV 776 (779)
Q Consensus 761 l~e~~~~l~E~~~~le 776 (779)
+.+......+..+.+.
T Consensus 94 ve~~r~~w~ek~~~~k 109 (148)
T COG2882 94 VEQKREIWQEKQIELK 109 (148)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766653
No 227
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=56.30 E-value=2.3e+02 Score=28.65 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 004019 699 NFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLM 769 (779)
Q Consensus 699 e~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~ 769 (779)
......|...++.+..|..++......-......-...+.++..++.+-...+.+|..++.++..++...+
T Consensus 115 a~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 115 AQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444445555555555555555555555556666666667777777777777777777777666554
No 228
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=55.93 E-value=2.7e+02 Score=29.36 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 004019 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635 (779)
Q Consensus 588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Ei 635 (779)
.+..+|...+.+....+..|..+......|.+.+...+.+..-|-...
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~ 56 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKR 56 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999999888888888877788777777776666555544
No 229
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.90 E-value=2.8e+02 Score=29.49 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=2.5
Q ss_pred HHHHHhH
Q 004019 748 VQVRGSL 754 (779)
Q Consensus 748 ~elr~~l 754 (779)
...+..+
T Consensus 129 ~~~~~~l 135 (302)
T PF10186_consen 129 EERKQRL 135 (302)
T ss_pred HHHHHHH
Confidence 3333333
No 230
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.39 E-value=5.3e+02 Score=32.61 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=9.4
Q ss_pred hHHHHhhhhhhHHHHHHHHHH
Q 004019 151 QMEEDRETGIPRTKNIVSNIL 171 (779)
Q Consensus 151 ~~e~~L~~r~~~tk~~l~~l~ 171 (779)
.+...+...+...+..+..+-
T Consensus 171 ~~~~~l~e~~~~~~~~~e~l~ 191 (908)
T COG0419 171 KLSELLKEVIKEAKAKIEELE 191 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 231
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=55.37 E-value=2.9e+02 Score=29.49 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=70.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 614 MVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQ 693 (779)
Q Consensus 614 ~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~ 693 (779)
.++||+.|-.. + +.-|..|..-.+-|...+.+..+++.-++....|... ... .-..+...
T Consensus 5 ~eEWKeGL~~~-----a-LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKq-------K~e-------~ek~e~s~ 64 (307)
T PF10481_consen 5 VEEWKEGLPTR-----A-LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQ-------KVE-------EEKNEYSA 64 (307)
T ss_pred HhHHhccCCHH-----H-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHH-------HHhhhhhh
Confidence 35677665422 1 3456666667777777888887777777764333221 111 11122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019 694 ANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV 761 (779)
Q Consensus 694 ~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l 761 (779)
+.+....+......++..-..+...++.-+-.+.-+++.+...+..+.-++..+..++..++..+.-.
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444455555555555555555555666666666666666666666666666655443
No 232
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=55.33 E-value=2.7e+02 Score=29.19 Aligned_cols=132 Identities=11% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 004019 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQ-ANASLNFFDMKAARIENQLR 713 (779)
Q Consensus 635 ie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~-~~~~ie~~~~~i~~~ee~lk 713 (779)
+..++.-+..|...--.-..+-...++.....+. ..+..++..+.. ....++....--..++..+.
T Consensus 7 L~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~-------------e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~ 73 (247)
T PF06705_consen 7 LASINERFSGFESDLENEKRQRREQEEQRFQDIK-------------EQIQKLEKALEAEVKRRVESNKKLQSKFEEQIN 73 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhhcC
Q 004019 714 FCLDQAQRLAEDRSQ-NSANLENTQKRLSDVRKSSVQVRGSLEE-SQSKVYKSRLTLMELQIELVKER 779 (779)
Q Consensus 714 ~l~~~~~~leeel~~-~~~~le~~r~~~~e~e~~l~elr~~le~-~e~~l~e~~~~l~E~~~~le~e~ 779 (779)
.++..+......... ++..+..+-.++..++..+.+-+..+.. .+.....+...+.++...++.||
T Consensus 74 ~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er 141 (247)
T PF06705_consen 74 NMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENER 141 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 233
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=55.05 E-value=1.7e+02 Score=30.17 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 004019 708 IENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLT 767 (779)
Q Consensus 708 ~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~ 767 (779)
+++......++...+++++......++........+.++++++....+.+-.....++..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666666665555444444444433
No 234
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=54.73 E-value=3.8e+02 Score=30.73 Aligned_cols=28 Identities=4% Similarity=0.172 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019 731 ANLENTQKRLSDVRKSSVQVRGSLEESQ 758 (779)
Q Consensus 731 ~~le~~r~~~~e~e~~l~elr~~le~~e 758 (779)
..++.++++-...+++.-.|+...+..+
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 235
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=54.00 E-value=1.6e+02 Score=32.42 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 004019 329 GRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (779)
Q Consensus 329 e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~ 376 (779)
.+..+......|...|.+++++.....|+.|..++..|...+..++.-
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~ 55 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREY 55 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677788888999999999999999999988887776665443
No 236
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.40 E-value=1.6e+02 Score=30.34 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 710 NQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVR 744 (779)
Q Consensus 710 e~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e 744 (779)
+.++.+......+++.+..+-..++.++.+..+++
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 33333444444444444444444444444444443
No 237
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.39 E-value=3.4e+02 Score=29.75 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ 758 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e 758 (779)
.++.++.....++......+......+..+...+.....+...+..++..+...++..+.- -..++..|+..+..++
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~---t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGF---TFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHH
Confidence 4444455555555555555556666666666666666666666666666666655555554 4445555555555554
Q ss_pred H
Q 004019 759 S 759 (779)
Q Consensus 759 ~ 759 (779)
.
T Consensus 285 ~ 285 (312)
T smart00787 285 S 285 (312)
T ss_pred H
Confidence 4
No 238
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.74 E-value=4.4e+02 Score=32.76 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 004019 79 DSTLKVVNKSWEELITDLESC 99 (779)
Q Consensus 79 d~~L~~v~~~W~QL~~~i~~l 99 (779)
-.+...|+++++++.+-+..+
T Consensus 37 ~~~~~~i~~~l~~~~e~~~~~ 57 (782)
T PRK00409 37 ETDFEEVEELLEETDEAAKLL 57 (782)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 456667788877766555444
No 239
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.60 E-value=93 Score=25.00 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 241 KAKLNRLKGELESAVKELEECNCKLAAL 268 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~~~kkl~~l 268 (779)
..++.-|...+..+..|...++.|||..
T Consensus 23 s~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 23 SSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555566666666666666543
No 240
>PRK11281 hypothetical protein; Provisional
Probab=52.15 E-value=6.5e+02 Score=32.66 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 647 TQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQ 692 (779)
Q Consensus 647 eqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~ 692 (779)
+.|..+-+.+...-.....+..+.....+.+..+......+.+++.
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~ 330 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQIS 330 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665555555555555555555555555555555555555444
No 241
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.04 E-value=3.2e+02 Score=29.06 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHhccHHHHHHHHHHHHHhHH-HhHHHHHHHHhHHhHHHHHHhhHhhhHHHhh----hhhhHHHHHHHHHHHHHhhhhh
Q 004019 454 ALVSSFPEDMSAMQRQLSKYKE-AALDIHILRADVLSLTNVLERKVKECETLLA----SSADQVAEIHKLQAMVQDLTDS 528 (779)
Q Consensus 454 ~l~~sl~~~i~~L~~e~~r~k~-~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~----~~~~~~~eik~Lr~q~~~l~e~ 528 (779)
.+-.+-+.++..+++++..|++ ....+..|..+++.+.+-+.....++..|+. .|-...=.|..|..++..+++.
T Consensus 56 ~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~ 135 (258)
T PF15397_consen 56 ILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS 135 (258)
T ss_pred HHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666653 3344555666666666555555555444432 3445555777788887776654
No 242
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=51.61 E-value=2.9e+02 Score=28.37 Aligned_cols=60 Identities=25% Similarity=0.326 Sum_probs=34.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHh
Q 004019 451 EFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQD 524 (779)
Q Consensus 451 E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~ 524 (779)
+-..+++.+..++..|+.++-. ....+..|+.++.+|..+-..+ ...+.+|..|+.++..
T Consensus 37 ~r~~l~s~y~~q~~~Lq~qLlq---~~k~~~~l~~eLq~l~~~~~~k-----------~~qe~eI~~Le~e~~~ 96 (206)
T PF14988_consen 37 ERQELVSRYAKQTSELQDQLLQ---KEKEQAKLQQELQALKEFRRLK-----------EQQEREIQTLEEELEK 96 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3445556666666666666644 3333555677777666655444 3445566666555443
No 243
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.46 E-value=2.2e+02 Score=26.97 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004019 729 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ 772 (779)
Q Consensus 729 ~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~ 772 (779)
.....+.+.+++..++..+..+...+.....++..+...+.++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555554443
No 244
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=51.07 E-value=99 Score=25.44 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccCh
Q 004019 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSK 354 (779)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~ 354 (779)
.|+.+|..+...+..++..+..+|.|+.|+..-|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP 37 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAP 37 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCC
Confidence 5788999999999999999999999998777544
No 245
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=50.61 E-value=3.1e+02 Score=32.05 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDD 644 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~ 644 (779)
|......|-..|..+|+.+++....+.+.|....+....|..|++++.--|++
T Consensus 435 Ka~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~ 487 (518)
T PF10212_consen 435 KAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE 487 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 56677888899999999999999999999999999999999999999988887
No 246
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.54 E-value=1.7e+02 Score=34.45 Aligned_cols=28 Identities=7% Similarity=0.106 Sum_probs=10.6
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 004019 741 SDVRKSSVQVRGSLEESQSKVYKSRLTL 768 (779)
Q Consensus 741 ~e~e~~l~elr~~le~~e~~l~e~~~~l 768 (779)
.++...+.++..++..++.++..++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 247
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.16 E-value=1.4e+02 Score=26.95 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019 701 FDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQK---RLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 701 ~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~---~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~ 771 (779)
....+-.+..+.+.+..++..+..+.+.++..+...++ .+.++-.+...++.++..++.++..+...+..+
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555554 244555555555555555555555555555443
No 248
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.83 E-value=2.1e+02 Score=26.02 Aligned_cols=92 Identities=9% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004019 677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQ--LRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL 754 (779)
Q Consensus 677 ~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~--lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~l 754 (779)
+..+..++..+..++..+...+......+..++.- -..++.-++.+-=+ +...........++..++..++.+..+.
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~-~~~~e~~~~l~~r~e~ie~~i~~lek~~ 90 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVK-TDKEEAIQELKEKKETLELRVKTLQRQE 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhhe-ecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554444444432 33344444432211 1123333333344444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 004019 755 EESQSKVYKSRLTLM 769 (779)
Q Consensus 755 e~~e~~l~e~~~~l~ 769 (779)
+.++.++.+++..+.
T Consensus 91 ~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 91 ERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 249
>PRK10869 recombination and repair protein; Provisional
Probab=48.79 E-value=5.3e+02 Score=30.64 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhHH
Q 004019 559 AWAHVHSLKSSLDE 572 (779)
Q Consensus 559 ~~~e~~~Lk~~L~e 572 (779)
++.+...+++.|++
T Consensus 162 ~y~~~~~~~~~l~~ 175 (553)
T PRK10869 162 AYQLWHQSCRDLAQ 175 (553)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 250
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=48.34 E-value=4.7e+02 Score=29.93 Aligned_cols=53 Identities=28% Similarity=0.397 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhHH--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004019 560 WAHVHSLKSSLDE--------QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKR 612 (779)
Q Consensus 560 ~~e~~~Lk~~L~e--------~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r 612 (779)
+-++.+|+.+|.. -.+..|++.|.++.+.++.+...++.+.+.+.++++..+|
T Consensus 409 ~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 409 KDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468888888842 3345678888888889999999998888888888888766
No 251
>COG5283 Phage-related tail protein [Function unknown]
Probab=48.32 E-value=7.2e+02 Score=32.08 Aligned_cols=77 Identities=14% Similarity=0.025 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 644 DMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLA 723 (779)
Q Consensus 644 ~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~le 723 (779)
.+++.|.+..+....+-...-++-. ....+..-+.+++.+..++.++.+-+-.|.......-.++-.+......+.
T Consensus 93 ay~e~~~q~tqae~~~~sas~q~~~----a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~ 168 (1213)
T COG5283 93 AYQEYNAQYTQAENKLRSLSGQFGV----ASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLR 168 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhch----hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHh
Confidence 3444555555444444444444444 444555566777777777777777665555555555555555555544444
Q ss_pred H
Q 004019 724 E 724 (779)
Q Consensus 724 e 724 (779)
+
T Consensus 169 e 169 (1213)
T COG5283 169 E 169 (1213)
T ss_pred H
Confidence 3
No 252
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=48.26 E-value=3.1e+02 Score=27.76 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004019 726 RSQNSANLENTQKRLSDVRKSSVQVRGSLEES 757 (779)
Q Consensus 726 l~~~~~~le~~r~~~~e~e~~l~elr~~le~~ 757 (779)
+....+.++..++.+..+...+...+..++.+
T Consensus 139 l~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 139 LAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 253
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=47.51 E-value=2.5e+02 Score=26.54 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 004019 721 RLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLT 767 (779)
Q Consensus 721 ~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~ 767 (779)
.+.+-+..+....+.....+..+...+..++.+++.+...+.++...
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666777777777777666665543
No 254
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.60 E-value=4.3e+02 Score=28.99 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 004019 639 GQSYDDMQTQNQQLLQQITERDD 661 (779)
Q Consensus 639 ~~A~e~lqeqn~rl~qq~~e~dd 661 (779)
....++++.+|..|+.++-...+
T Consensus 98 q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33445666777777777766666
No 255
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=46.08 E-value=1.7e+02 Score=24.25 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004019 241 KAKLNRLKGELESAVKELEE 260 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~ 260 (779)
..+-..|....+.+..+++.
T Consensus 34 ~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 34 REERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334433333333
No 256
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=45.58 E-value=3.4e+02 Score=27.48 Aligned_cols=82 Identities=15% Similarity=0.271 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRG 752 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~ 752 (779)
....+..+......++.++...... ..+++..+..+...+..+...........+.....+..+......++.
T Consensus 101 lk~~~~~~~e~~k~le~~~~~~~~~-------~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 101 LKDDQEKLLEERKKLEKKIEEKEAE-------LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666654333 333444444444444444444333334444444444444444444444
Q ss_pred hHHHHHHHH
Q 004019 753 SLEESQSKV 761 (779)
Q Consensus 753 ~le~~e~~l 761 (779)
.+..++.+.
T Consensus 174 ~~~~~e~~F 182 (190)
T PF05266_consen 174 EIENAELEF 182 (190)
T ss_pred HHHHHHHHH
Confidence 444444433
No 257
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.57 E-value=2.1e+02 Score=33.56 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 726 RSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 726 l~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
+.....++......+.+++..+++++.++..++.++..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 133 FDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555555555555555555555555443
No 258
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.96 E-value=82 Score=24.10 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (779)
Q Consensus 355 ~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~ 387 (779)
-|-.|+..+..|++.++.+..+.+.|+++...+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555555555555554433
No 259
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.71 E-value=2.1e+02 Score=24.60 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 004019 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL 666 (779)
Q Consensus 591 ~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl 666 (779)
.|+..+-..|.=|++.++.. ++....|..|++.+....+.+..+|.++.++..-=.+....|
T Consensus 11 ~KIqqAvdtI~LLqmEieEL--------------Kekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEEL--------------KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 260
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.44 E-value=5.7e+02 Score=29.43 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDDMQTQNQQ 651 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~lqeqn~r 651 (779)
..+-++|.-|+..+..-|--+|+.-..
T Consensus 410 r~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 410 RNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334555555555555555555544333
No 261
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.29 E-value=2.5e+02 Score=25.26 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004019 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLME 770 (779)
Q Consensus 733 le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E 770 (779)
.......+..++..+..+..+++..+.++.+++..+.+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444555555555555555554444
No 262
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.82 E-value=1.9e+02 Score=23.72 Aligned_cols=43 Identities=9% Similarity=0.188 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 004019 721 RLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK 763 (779)
Q Consensus 721 ~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e 763 (779)
.+.++++.....+-.+..++.+.+....+|...++....++.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 263
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.57 E-value=7.3e+02 Score=30.50 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--hhhHHHHHHHHHHHHH
Q 004019 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDAL--KSKNEEIEAYLSEIET 637 (779)
Q Consensus 588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l--~~~~~e~eaL~~Eie~ 637 (779)
.+.+.+.=.+.++..++.+|+.+++.+..++.+- -....+..+++..+..
T Consensus 264 ~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~ 315 (726)
T PRK09841 264 QDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVN 315 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4555667778888888999998888888888743 2334455555555533
No 264
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.54 E-value=1.3e+02 Score=29.50 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (779)
Q Consensus 204 ~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk 269 (779)
.+..|+..|+..+..|+.+++.| +.++..|..++..+..+|...-.=++|++
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~L--------------e~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEEL--------------EKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777 66666667777777777777666555554
No 265
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=42.51 E-value=2.6e+02 Score=25.34 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004019 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERD 273 (779)
Q Consensus 208 E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~ 273 (779)
.+.-|...+-.=+++...+..++.. .++.+..+..++|.+.++-....+|+..|.-+-.
T Consensus 13 Q~~vLKKaVieEQ~k~~~L~e~Lk~-------ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 13 QNQVLKKAVIEEQAKNAELKEQLKE-------KEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555544 3788888888888888888888888888875543
No 266
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=42.25 E-value=4.8e+02 Score=28.30 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 632 LSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA 706 (779)
Q Consensus 632 ~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~ 706 (779)
..|||.|++-.-+|.+--..=--.-+-.-| ..+.+..|.+++..|+.++..+...++.....+.
T Consensus 34 V~EVEKLsqTi~ELEEaiLagGaaaNavrd-----------Yqrq~~elneEkrtLeRELARaKV~aNRVA~vvA 97 (351)
T PF07058_consen 34 VLEVEKLSQTIRELEEAILAGGAAANAVRD-----------YQRQVQELNEEKRTLERELARAKVSANRVATVVA 97 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 678888877666654422111111112222 3344457888999999999888887776665544
No 267
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.94 E-value=3.3e+02 Score=28.15 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 004019 558 KAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKS 623 (779)
Q Consensus 558 k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~ 623 (779)
++..++..+++.+..+.. +.+-.+.....+..++++++.....|+..+.+...++.+...
T Consensus 131 ~~~~~~~~lk~~~~~~~~------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSK------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHhhhcccc------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777776665332 111111122244555666666666666664444444444333
No 268
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.49 E-value=5.8e+02 Score=28.97 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLN-FFDMKAARIENQLRFCLDQAQRLA 723 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie-~~~~~i~~~ee~lk~l~~~~~~le 723 (779)
.|+..|..++..+...++ ......+.+.|.+..++..+.+++
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 334566778888888888888888
No 269
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.17 E-value=8.5e+02 Score=30.83 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=15.5
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRL 436 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~ 436 (779)
..++.++...++-+..++|++.-.-
T Consensus 445 ~~r~~~~~~~~~~~k~~~del~~~R 469 (1200)
T KOG0964|consen 445 KGRMEEFDAENTELKRELDELQDKR 469 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665544
No 270
>PRK11281 hypothetical protein; Provisional
Probab=41.07 E-value=9.3e+02 Score=31.29 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCc----cchhhhhhhHHHHHHHHH
Q 004019 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRV----RDEQRDLRDMESVHKELM 313 (779)
Q Consensus 238 ~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~eE~~ 313 (779)
.....+...++.+++++-.++..+.+++++++....... + ....+.+-..- ..-...+.+.+..+..+.
T Consensus 76 ~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~----~---~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~N 148 (1113)
T PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET----R---ETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYN 148 (1113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccc----c---ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334778888899999999999999999988874211110 0 00000000000 000001223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc----cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 004019 314 DQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (779)
Q Consensus 314 ~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~----~~i~~S~~yk~L~~q~~~l~~~~~~~r~~ 376 (779)
......-.+.+..+.........++.++..+.+. ..+. -.....|+.+...++++++-.+.+
T Consensus 149 sqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~-~~~~~~l~ae~~~l~~~~~~~~~~ 214 (1113)
T PRK11281 149 SQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALR-PSQRVLLQAEQALLNAQNDLQRKS 214 (1113)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555666666666666542 1222 134555666666666665555544
No 271
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.53 E-value=3.3e+02 Score=26.74 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 687 MESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRL 740 (779)
Q Consensus 687 le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~ 740 (779)
+..+...+...+..+...+..++..+..+..+...++++...+-..|+..|+-+
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555666666666666666666777666666666666643
No 272
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=40.33 E-value=5.7e+02 Score=28.61 Aligned_cols=42 Identities=31% Similarity=0.386 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHH----------HHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004019 598 AEIADMRQKLEA----------FKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (779)
Q Consensus 598 ~ei~~L~~~l~~----------~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~ 639 (779)
++|..||.-|.. --++.-+|..-|.+++.+..-|..||-.+.
T Consensus 481 aEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk 532 (593)
T KOG4807|consen 481 AEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK 532 (593)
T ss_pred HHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456666655531 234555666677777888888888877663
No 273
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=40.28 E-value=7.9e+02 Score=30.22 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=17.6
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019 742 DVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE 774 (779)
Q Consensus 742 e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~ 774 (779)
+.+.++..|.+..+-.+..+..+-.+..|..+.
T Consensus 367 ~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444
No 274
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=40.07 E-value=6.8e+02 Score=30.62 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (779)
Q Consensus 590 ~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~ 668 (779)
-+.|-..+..+..|...++.+...++++...|..-......+...|+.|..-.-.+|-+.........+++.+...+.-
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i 100 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSI 100 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCC
Confidence 3345555666677777777777777777777777777777778888888777777777777666667777776555443
No 275
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=39.96 E-value=50 Score=32.65 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019 705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV 761 (779)
Q Consensus 705 i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l 761 (779)
+..+|.++...++.-..|+.|+ ...+.++-.++.+..++.|||..+ .++.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 5678888888888899999998 557777788888888888888887 444443
No 276
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.48 E-value=2.9e+02 Score=24.87 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004019 632 LSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV 667 (779)
Q Consensus 632 ~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~ 667 (779)
...+..+++-+..+..+...+..++++.+.....|.
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555444444
No 277
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=39.27 E-value=6.5e+02 Score=28.94 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=10.8
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKSRLT 767 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~~~~ 767 (779)
...++.+.+.++..++..+...+..
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 278
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.10 E-value=2.2e+02 Score=23.37 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 004019 211 NLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESA 254 (779)
Q Consensus 211 ~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~ 254 (779)
.++..++.++.-+..+..+++...........+|..|..+++++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666665333333344444444444443
No 279
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.81 E-value=4.6e+02 Score=27.10 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004019 681 LMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQ 749 (779)
Q Consensus 681 ~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~e 749 (779)
++....+...++.....-+.+...+.+++..+..++..+..++.+..++...+...-.++-.+.+.+.+
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 333444444455555555555555555666666666666666655555544444433343333333333
No 280
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.69 E-value=2.3e+02 Score=23.66 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhH
Q 004019 415 IADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490 (779)
Q Consensus 415 ~~~lE~~l~rir~erd~L~~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l 490 (779)
+.+||..++......--|..++++.+..... ..-..+.+.-.+.|..++.+|+.+-..|.+. |++=++-+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer------lrsLLGkm 76 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER------LRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhh
No 281
>PRK15396 murein lipoprotein; Provisional
Probab=38.61 E-value=1.9e+02 Score=24.94 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (779)
Q Consensus 207 ~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~l 268 (779)
+++..|+++++.|..+.-.+ .+.+..+......+..|-..++.|||..
T Consensus 25 ~kvd~LssqV~~L~~kvdql--------------~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQL--------------SNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777776666666 5555555666666777777777777654
No 282
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.76 E-value=3.7e+02 Score=28.82 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004019 724 EDRSQNSANLENTQKRLSDVRKS 746 (779)
Q Consensus 724 eel~~~~~~le~~r~~~~e~e~~ 746 (779)
+|+.++.+-++.+|..+.+..+.
T Consensus 124 kEIkQLkQvieTmrssL~ekDkG 146 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSLAEKDKG 146 (305)
T ss_pred HHHHHHHHHHHHHHhhhchhhhh
Confidence 44444444444444444444333
No 283
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.06 E-value=4.7e+02 Score=26.69 Aligned_cols=14 Identities=7% Similarity=0.456 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 004019 732 NLENTQKRLSDVRK 745 (779)
Q Consensus 732 ~le~~r~~~~e~e~ 745 (779)
.++.++.++..++.
T Consensus 166 ~~er~e~ki~~~ea 179 (221)
T PF04012_consen 166 SFERMEEKIEEMEA 179 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 284
>PRK10698 phage shock protein PspA; Provisional
Probab=36.96 E-value=5e+02 Score=26.91 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004019 703 MKAARIENQLRFCLDQAQR 721 (779)
Q Consensus 703 ~~i~~~ee~lk~l~~~~~~ 721 (779)
....++|+++..+..+...
T Consensus 166 ~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 166 ARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444443
No 285
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.89 E-value=5.2e+02 Score=27.11 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~ 728 (779)
....+..+..++..+..++..+..+++.+......++..+......+..++..+..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444333
No 286
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.72 E-value=2.3e+02 Score=25.97 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 714 FCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 714 ~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
.+...+..++..+..+...+..++..+.++-.+...|+..-+++...+.+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555554444444443
No 287
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.56 E-value=2e+02 Score=33.17 Aligned_cols=10 Identities=0% Similarity=0.195 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 004019 210 KNLRLALMDL 219 (779)
Q Consensus 210 ~~L~~~~~~L 219 (779)
..|+..++.|
T Consensus 79 sELEKqLaaL 88 (475)
T PRK13729 79 AQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 288
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.38 E-value=9.1e+02 Score=30.03 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 004019 80 STLKVVNKSWEELITDLESC 99 (779)
Q Consensus 80 ~~L~~v~~~W~QL~~~i~~l 99 (779)
.....|+++++.+.+-+.++
T Consensus 38 ~~~~~i~~~l~~~~e~~~~~ 57 (771)
T TIGR01069 38 KSVEESKEIIIKLTALGSIE 57 (771)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 45667777777766655544
No 289
>PRK10722 hypothetical protein; Provisional
Probab=36.19 E-value=2.6e+02 Score=29.31 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccCCccccCcCCC
Q 004019 212 LRLALMDLHLKHK---SLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR-AERDVTKGAFFPVLNLGN 287 (779)
Q Consensus 212 L~~~~~~L~~k~k---~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk-~e~~~~~g~~~~~~~~~~ 287 (779)
|+..+.......- .|+.+-.+++-......+++..|..+.-+++.+|....+||..|. .|++-+...+..+....+
T Consensus 143 lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsRk~~~~~~~~~ 222 (247)
T PRK10722 143 VRPLYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLSSRKQAGNFSPDT 222 (247)
T ss_pred hhHHHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCc
Q ss_pred CCCCCCCccchh
Q 004019 288 KHVAGDRVRDEQ 299 (779)
Q Consensus 288 ~~~~~g~~~~~~ 299 (779)
...++.++.+..
T Consensus 223 ~~~~~~~~~~~~ 234 (247)
T PRK10722 223 PEKPATSEESEA 234 (247)
T ss_pred cccccCCCcCCC
No 290
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.11 E-value=1.5e+02 Score=22.64 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 004019 320 LLELKGLHDGRIKVLQQLYNLQNTL 344 (779)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l 344 (779)
..+-+.|..++..|..++..|+.++
T Consensus 18 k~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 18 KAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555555555443
No 291
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.94 E-value=5.2e+02 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 004019 720 QRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLE 755 (779)
Q Consensus 720 ~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le 755 (779)
..+...+.......+.++..+..++..+.+++..++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444333
No 292
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=35.82 E-value=4.8e+02 Score=28.35 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 004019 642 YDDMQTQNQQLLQQITERDDYN 663 (779)
Q Consensus 642 ~e~lqeqn~rl~qq~~e~dd~~ 663 (779)
.+++|.+|..|..|+.-..+-|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEEN 23 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEEN 23 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHH
Confidence 3788999999998887766633
No 293
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.46 E-value=5.6e+02 Score=27.09 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 241 KAKLNRLKGELESAVKELEECNCK 264 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~~~kk 264 (779)
.+++.+.+.-++.+..+|..+..-
T Consensus 12 ~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 12 EAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555555555543
No 294
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.98 E-value=72 Score=25.77 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=16.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Q 004019 448 IIAEFRALVSSFPEDMSAMQRQLSK 472 (779)
Q Consensus 448 ~~~E~k~l~~sl~~~i~~L~~e~~r 472 (779)
++.|+...|..|+.+|..|+.|+.+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666654
No 295
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.92 E-value=9.1e+02 Score=29.34 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=81.0
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCchhhh-hhhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 004019 156 RETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQK-ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQ 234 (779)
Q Consensus 156 L~~r~~~tk~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~ 234 (779)
....+..+......|...+.........|+.+|...+.-+. ..+ ...-|......|...+..|.
T Consensus 52 y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-~~~k~e~tLke~l~~l~~~le~lr-------------- 116 (660)
T KOG4302|consen 52 YKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-ISDKIEGTLKEQLESLKPYLEGLR-------------- 116 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-cccccCccHHHHHHHHHHHHHHHH--------------
Confidence 33555566667777777777777778888887764421111 000 12223444444444433332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCccchh-hhhhhHHHHHHHHH
Q 004019 235 DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQ-RDLRDMESVHKELM 313 (779)
Q Consensus 235 d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~eE~~ 313 (779)
........++.++..+++.++.++ |++. + .+....+...+-+ +.++++...+.+++
T Consensus 117 ~qk~eR~~ef~el~~qie~l~~~l------------------~g~~-~----~~~~~~~D~~dlsl~kLeelr~~L~~L~ 173 (660)
T KOG4302|consen 117 KQKDERRAEFKELYHQIEKLCEEL------------------GGPE-D----LPSFLIADESDLSLEKLEELREHLNELQ 173 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------------------cCCc-c----CCcccccCcccccHHHHHHHHHHHHHHH
Confidence 222233666666666666655543 2210 0 0111111222222 56899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 314 DQASHQLLELKGLHDGRIKVLQQL 337 (779)
Q Consensus 314 ~la~~Rl~ELe~l~~e~~~l~~e~ 337 (779)
..=..|++.......++..|-..+
T Consensus 174 ~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 174 KEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998888887777776554
No 296
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.35 E-value=3.2e+02 Score=32.47 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=52.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCc-cccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT-LKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFE 378 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~-l~~~-~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e 378 (779)
..++++..+++....-..|..+|.. ..+...+.+.+..|+.. +.++ +.......|..|+.++...++. ++....
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~---i~~~~~ 240 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQK---IKSAKN 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4677888888888888888888863 66666777777777664 4444 3223223444444444333333 333333
Q ss_pred HHHHHHHHHHHHHHHh
Q 004019 379 KLQVEKDNLAWRETEL 394 (779)
Q Consensus 379 ~Lq~er~~~~~~~~E~ 394 (779)
.|+..+.+++.++.++
T Consensus 241 ~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 241 DLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3566666665555443
No 297
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.01 E-value=5.8e+02 Score=28.18 Aligned_cols=55 Identities=9% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENT 736 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~ 736 (779)
++-+.++.+.+.++.......++++....-...+...+..-.+.+..+...+...
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666666665555555555555555555555544444
No 298
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=33.70 E-value=5.4e+02 Score=26.35 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004019 711 QLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVK 777 (779)
Q Consensus 711 ~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~le~ 777 (779)
....+..++..+..++.......+........=...+.+=+.++=.++++|.-..+..-.....|++
T Consensus 132 ~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~ 198 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALER 198 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666665555555555444444444555555556666666665555555555554
No 299
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=33.51 E-value=2.1e+02 Score=25.11 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLA 266 (779)
Q Consensus 207 ~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~ 266 (779)
+.+..|+++++.|..+.-.++. .++.++...+.+..+-..++.|||
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~--------------dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQ--------------DMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677777777777777777744 444446666666666666666664
No 300
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.39 E-value=4e+02 Score=26.39 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=40.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 004019 673 ARQLQDAL--LMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQ--RLAEDRSQNSANLENTQK 738 (779)
Q Consensus 673 ~~q~~~~l--~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~--~leeel~~~~~~le~~r~ 738 (779)
++|.+|.. .++...|...+..++..+..+.+.++..+..++.|+..+. .+.+++..+......++.
T Consensus 68 a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~e 137 (201)
T KOG4603|consen 68 ADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRE 137 (201)
T ss_pred ecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 56666632 5677777777777777777777777777777777766543 233444433333333333
No 301
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=33.37 E-value=4.3e+02 Score=25.13 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=25.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (779)
Q Consensus 228 ~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk 269 (779)
.+++..+..+...+.-++.|+.++..-..++...+.+|+.+.
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555566666666666666666666666665554
No 302
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=33.33 E-value=1.2e+03 Score=30.18 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 004019 737 QKRLSDVRKSSVQVRGSLEESQSKVYKSRL 766 (779)
Q Consensus 737 r~~~~e~e~~l~elr~~le~~e~~l~e~~~ 766 (779)
+....+....+..+...+..+...+.....
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 745 (1047)
T PRK10246 716 LDNWRQVHEQCLSLHSQLQTLQQQDVLEAQ 745 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333333333333
No 303
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=33.19 E-value=9.8e+02 Score=29.20 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=21.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (779)
Q Consensus 620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~ 653 (779)
.++......+-.-.=+|++..-++++++.|+.|+
T Consensus 147 r~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 147 RNAALTKAEEHSGNIEERTRKLEEQLEELNAELQ 180 (916)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444456777777888888887776
No 304
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=33.17 E-value=6e+02 Score=26.74 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019 701 FDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 701 ~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~ 771 (779)
....+..++..++..+...-...+....+...++..+.++.+++..+..-+.....+=..|..|-..+-+-
T Consensus 154 ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~ 224 (239)
T PF05276_consen 154 AEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQ 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555556666666666666666666655555544455444444443
No 305
>PRK11519 tyrosine kinase; Provisional
Probab=33.16 E-value=1e+03 Score=29.31 Aligned_cols=35 Identities=11% Similarity=0.271 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 004019 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALK 622 (779)
Q Consensus 588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~ 622 (779)
.+.+.+.=.+.++..++.+|+.+++.+...+.+-.
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455667788888888888888888888777443
No 306
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=33.12 E-value=9.2e+02 Score=28.88 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004019 577 LRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETI 638 (779)
Q Consensus 577 ~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l 638 (779)
++|..+.+.--+--.||+..|.=|++-+.+|-. .+++|..|+=..
T Consensus 125 LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna-----------------tEEmLQqellsr 169 (861)
T KOG1899|consen 125 LQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA-----------------TEEMLQQELLSR 169 (861)
T ss_pred ehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch-----------------HHHHHHHHHHhh
Confidence 344444443333444788888888888888855 566777776555
No 307
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.07 E-value=2.7e+02 Score=27.88 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=51.1
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI 482 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~ 482 (779)
.+.+..|+.+|++.+...-.|.-.++.++...+. .....++....+++.+.+..|+.++.++++.-+.++.
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~ 151 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFE 151 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 4456666677766666555555556555554444 4677799999999999999999999998877666555
No 308
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=32.91 E-value=4.4e+02 Score=26.24 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 647 TQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQA 719 (779)
Q Consensus 647 eqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~ 719 (779)
....-|+|.=.+..-....|..||.+-...+.+.-.+++.|..+-..++.+++...-+++++.+..+.|+..+
T Consensus 95 ~~vRPL~QlWRe~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSRK 167 (179)
T PF13942_consen 95 ASVRPLLQLWREQQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSRK 167 (179)
T ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccC
Confidence 3444555555555555666777888888888888888999998888899999999999999998888887654
No 309
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.78 E-value=5e+02 Score=29.68 Aligned_cols=71 Identities=13% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004019 703 MKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR----LSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQI 773 (779)
Q Consensus 703 ~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~----~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~ 773 (779)
..+-.+....+.+..++..+..+.+..+..+-..++. ..++-..++.++.++...+.++..+...+.+.-.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555442211 3345555666666666666666666666665543
No 310
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.63 E-value=3e+02 Score=24.15 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHH
Q 004019 242 AKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLL 321 (779)
Q Consensus 242 ~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ 321 (779)
.+|..+++.+-....+++.+++||-+ . ..+ +.+=..++.++.+++..+..=-.
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~----------~----------eLs-------~e~R~~lE~E~~~l~~~l~~~E~ 57 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRR----------R----------ELS-------PEARRSLEKELNELKEKLENNEK 57 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcc----------c----------CCC-------hHHHHHHHHHHHHHHHHhhccHH
Confidence 45666677777777777777777610 0 001 12346788899999999999999
Q ss_pred HHHHHHHHHHH
Q 004019 322 ELKGLHDGRIK 332 (779)
Q Consensus 322 ELe~l~~e~~~ 332 (779)
+|..|+.+|.+
T Consensus 58 eL~~LrkENrK 68 (85)
T PF15188_consen 58 ELKLLRKENRK 68 (85)
T ss_pred HHHHHHHhhhh
Confidence 99999988865
No 311
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=32.54 E-value=1.3e+03 Score=30.37 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 004019 587 AISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSY-----------DDMQTQNQQLLQQ 655 (779)
Q Consensus 587 a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~-----------e~lqeqn~rl~qq 655 (779)
+...+++..++.++.+|+..+......+..+.+.+.....+.+..+++-+.+-.-- .++++-+..+++.
T Consensus 874 ~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~ 953 (1294)
T KOG0962|consen 874 ERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQI 953 (1294)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777889999999999999999999999988888888888887776665542 3333444444433
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 004019 656 ITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ--LRFCLDQAQRLAEDRSQNSANL 733 (779)
Q Consensus 656 ~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~--lk~l~~~~~~leeel~~~~~~l 733 (779)
......+... ++..++ .-....+...+..+..++..+...+..+.+.-+.+++. ++.+..++..+..++..+..++
T Consensus 954 ~~~~~~~~~~-~~~~~~-~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi 1031 (1294)
T KOG0962|consen 954 YKLNECFEQY-GFDDLR-IAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQI 1031 (1294)
T ss_pred HHhHHHHHHH-hhhhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222111 111111 11222344455555555555555555555544444444 3444555555555555544444
Q ss_pred HHHH
Q 004019 734 ENTQ 737 (779)
Q Consensus 734 e~~r 737 (779)
-..+
T Consensus 1032 ~~~~ 1035 (1294)
T KOG0962|consen 1032 LEAD 1035 (1294)
T ss_pred HHhH
Confidence 4333
No 312
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.40 E-value=3.6e+02 Score=24.47 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 206 QSEVKNLRLALMDLHLKHKSLTRELQSR--QDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (779)
Q Consensus 206 ~~E~~~L~~~~~~L~~k~k~l~~e~~~~--~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~l 268 (779)
..++..|...++....+-..+..+++++ ++-....+.++.+++|++..+...+.-..+.++.|
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 313
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.39 E-value=4.4e+02 Score=24.91 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ 758 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e 758 (779)
.+......+-.++.++-..+...+.+ |..++..+...+.........++.++.++...+...+..++.++
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555555554444444332 23334444444444444445555555555555555555566666
Q ss_pred HHHHHHHHHHHHH
Q 004019 759 SKVYKSRLTLMEL 771 (779)
Q Consensus 759 ~~l~e~~~~l~E~ 771 (779)
..+..+..++.++
T Consensus 110 ~~V~~Le~ki~~i 122 (126)
T PF07889_consen 110 QMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 314
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=32.26 E-value=1.8e+02 Score=23.86 Aligned_cols=59 Identities=22% Similarity=0.463 Sum_probs=37.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHH---HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEE---ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK 472 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~---~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r 472 (779)
+..+..|++.+.++..+.+.+...+.. ...++ ..++..-+.....+..++..|...+..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP--~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAP--EEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777743 22222 356777777777777777776665544
No 315
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=32.20 E-value=4.4e+02 Score=24.89 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHH
Q 004019 354 KAFLSVKNQLEKSKSEV---------FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQK 424 (779)
Q Consensus 354 ~~yk~L~~q~~~l~~~~---------~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~r 424 (779)
++|+.+-..+..|-... +......+.+..+...+.-.+.... -..++-.+-...++.....++..+..
T Consensus 16 r~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q---~~~~~n~~e~e~Y~~~~~~i~~~i~~ 92 (139)
T PF05615_consen 16 RPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQ---LILEMNKRERENYEQLNEEIEQEIEQ 92 (139)
T ss_pred hhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665555554433 2333444444444444433332221 11222222222234444555555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 004019 425 QIDEKNRIEMRLEEASREPGRKEIIAEFRALVSS 458 (779)
Q Consensus 425 ir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~s 458 (779)
++.+-..|..++..++.--..+.-.+.+-..|.+
T Consensus 93 ~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~ 126 (139)
T PF05615_consen 93 AKKEIEELKEELEEAKRVRQNKEEYDALAKKINS 126 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555555544433333333333333333
No 316
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.93 E-value=9.4e+02 Score=28.61 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 704 KAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 704 ~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
.+...++.+..|..++..+..++......+-..|++
T Consensus 336 ~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 336 QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555554444
No 317
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.77 E-value=8.7e+02 Score=28.21 Aligned_cols=8 Identities=13% Similarity=0.426 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 004019 600 IADMRQKL 607 (779)
Q Consensus 600 i~~L~~~l 607 (779)
|++++.++
T Consensus 378 I~~~k~r~ 385 (508)
T KOG3091|consen 378 IEEAKNRH 385 (508)
T ss_pred HHHHHHHH
Confidence 33333333
No 318
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.76 E-value=3.5e+02 Score=26.25 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 678 DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQK 738 (779)
Q Consensus 678 ~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~ 738 (779)
..+...+..++.++......++.+...+.+.+..+......+..+++.+......+....+
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666666666666666665555555555555555544444443333
No 319
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=31.74 E-value=8e+02 Score=28.24 Aligned_cols=99 Identities=11% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 004019 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLE 437 (779)
Q Consensus 358 ~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e 437 (779)
.-.+++...+.+++.....+.+-+.....|+.+-.-+--.. ..++. -.-|..|+.+|+..+.+.+.|+.-+
T Consensus 239 ar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~-~a~~~-------~~lI~~Le~qLa~~~aeL~~L~~~~- 309 (434)
T PRK15178 239 MQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKE-TITAI-------YQLIAGFETQLAEAKAEYAQLMVNG- 309 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH-HHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 34567777888888888888777888888877642221000 11111 2456777777777777777664432
Q ss_pred HHhcCCCchhHHHHHHHHHhccHHHHHHHHHHH
Q 004019 438 EASREPGRKEIIAEFRALVSSFPEDMSAMQRQL 470 (779)
Q Consensus 438 ~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~ 470 (779)
.+..|.+.-++.-|.+|..+|...++.+
T Consensus 310 -----~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 310 -----LDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 1224666777777777777777766665
No 320
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.62 E-value=2.8e+02 Score=22.38 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 004019 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESA 254 (779)
Q Consensus 209 ~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~ 254 (779)
+..|-+.+..|..+.-.|+.++..++.....+..|-.+-...|+..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555433333444444444444443
No 321
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.10 E-value=1.5e+02 Score=34.09 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 004019 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635 (779)
Q Consensus 589 ~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Ei 635 (779)
.|.+...+|.+++.|+..++...+...++...|...+.+...|...+
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566655555444444444444444444444444443
No 322
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.03 E-value=5.2e+02 Score=25.40 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 004019 709 ENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLM 769 (779)
Q Consensus 709 ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~ 769 (779)
++.++..+..+..+.-.+......-..++..-.+++..+..+..-++.++..+..+...++
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~ 136 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLN 136 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444445555555555555555555554444443
No 323
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.00 E-value=3.2e+02 Score=30.30 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 656 ITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLEN 735 (779)
Q Consensus 656 ~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~ 735 (779)
...+......+.. +...+...+.++..++..+..+....+........++.....+...+.....=+..++....+
T Consensus 220 ~~~l~~a~~~l~~----~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R 295 (344)
T PF12777_consen 220 RQKLEEAEAELEE----AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKER 295 (344)
T ss_dssp HHHHHHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhh
Q ss_pred HHHHHHHHHHhHHHH
Q 004019 736 TQKRLSDVRKSSVQV 750 (779)
Q Consensus 736 ~r~~~~e~e~~l~el 750 (779)
+...+..++..+.-+
T Consensus 296 W~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 296 WSEQIEELEEQLKNL 310 (344)
T ss_dssp CHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
No 324
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=30.95 E-value=4.3e+02 Score=26.21 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 714 FCLDQAQRLAEDRSQNSANLENTQKRL 740 (779)
Q Consensus 714 ~l~~~~~~leeel~~~~~~le~~r~~~ 740 (779)
.++.....+.+++.-.+..+.+++..+
T Consensus 120 emQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444444443
No 325
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.88 E-value=4.1e+02 Score=25.78 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQ 718 (779)
Q Consensus 677 ~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~ 718 (779)
+..|..++...+..++.....+..+...+......++....+
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555555555555555445544444444444444444444
No 326
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=30.83 E-value=3.1e+02 Score=24.08 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=42.4
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHhccHHHHHHHHHHHHH
Q 004019 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGR----KEIIAEFRALVSSFPEDMSAMQRQLSK 472 (779)
Q Consensus 413 ~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~----~~~~~E~k~l~~sl~~~i~~L~~e~~r 472 (779)
.+|..+|..+++||...+.+...+....-.++. -.-..+++..+....++...|..+.++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 588999999999999999999888664433332 244455556666677777777766655
No 327
>PF13514 AAA_27: AAA domain
Probab=30.83 E-value=1.3e+03 Score=29.94 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQ 341 (779)
Q Consensus 302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk 341 (779)
+..+......+..-...--.++.+...++..+..++..+.
T Consensus 348 i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 387 (1111)
T PF13514_consen 348 IRELLQEREQLEQALAQARRELEEAERELEQLQAELAALP 387 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4555555544444444444455555555555555554443
No 328
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=30.72 E-value=9.4e+02 Score=28.23 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 004019 721 RLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK 763 (779)
Q Consensus 721 ~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e 763 (779)
.++.-++.+...+-.....+..+..+-..+..+++.++.++++
T Consensus 389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 389 ELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 3444455555555555566666777777777788888777764
No 329
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=30.43 E-value=2.1e+02 Score=29.78 Aligned_cols=69 Identities=28% Similarity=0.224 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccccCCcc
Q 004019 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL---AALRAERDVTKGAFF 280 (779)
Q Consensus 204 ~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl---~~lk~e~~~~~g~~~ 280 (779)
+|..|+..|+..++.|+++++.| -.+..+|...|+....+|..+.... .+.-.+...+.|+++
T Consensus 101 dL~een~~L~~en~~Lr~~n~~L--------------~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~eee~~~~gaev 166 (292)
T KOG4005|consen 101 DLTEENEILQNENDSLRAINESL--------------LAKNHELDSELELLRQELAELKQQQQHNTRVIEEENASAGAEV 166 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHHhhhhhccCCce
Q ss_pred ccCcCC
Q 004019 281 PVLNLG 286 (779)
Q Consensus 281 ~~~~~~ 286 (779)
-..+++
T Consensus 167 ~~v~G~ 172 (292)
T KOG4005|consen 167 WYVTGG 172 (292)
T ss_pred EEecCC
No 330
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=30.16 E-value=4.9e+02 Score=27.13 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHH--HHHhhhHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHH
Q 004019 552 ARDLEYKAWAHVH--SLKSSLDEQSLELR-VKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEI 628 (779)
Q Consensus 552 ~~~~E~k~~~e~~--~Lk~~L~e~~~e~~-vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~ 628 (779)
..-.|++.++++. .+..++.-+....- .|.|- .-+++|.-.|-|-.+-..+|..+ ++..
T Consensus 89 ~r~~eakvraei~~mkVt~kvn~h~kI~g~rKtA~----~~~rKl~~ke~E~~EKErqlSeA--------------eEn~ 150 (265)
T PF06409_consen 89 WRHMEAKVRAEIRKMKVTTKVNSHYKINGKRKTAK----KHLRKLSMKECEHAEKERQLSEA--------------EENG 150 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHhhH----HHHHHHHHHHHHHHHHHhhhhhh--------------hhcc
Confidence 3446777888877 55555665544110 11111 11345555554444444444443 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 629 EAYLSEIETIGQSYDDMQTQNQQL 652 (779)
Q Consensus 629 eaL~~Eie~l~~A~e~lqeqn~rl 652 (779)
..-..||.++.+-|..||++..+-
T Consensus 151 kl~mkei~tY~~~fQ~~Qel~~Ra 174 (265)
T PF06409_consen 151 KLAMKEIHTYKQMFQRMQELQQRA 174 (265)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 556679999999998888875543
No 331
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=30.07 E-value=5.9e+02 Score=25.74 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004019 691 IQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLME 770 (779)
Q Consensus 691 l~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E 770 (779)
+...+..+.............+..|..-+......+.............+.+...-+..-+.+++.+..+|...+..|..
T Consensus 90 L~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 90 LQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444455445555555555555555666666666666666666666666666666666655
Q ss_pred HHH
Q 004019 771 LQI 773 (779)
Q Consensus 771 ~~~ 773 (779)
++.
T Consensus 170 tk~ 172 (188)
T PF05335_consen 170 TKK 172 (188)
T ss_pred HHH
Confidence 543
No 332
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.60 E-value=7.3e+02 Score=26.65 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 579 VKTAIEAEAISQQRLAAAEAEIADMRQKLEAF 610 (779)
Q Consensus 579 vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~ 610 (779)
|.++.....+...+|..-+.||.+|+.+|.-.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444455556666667777777766443
No 333
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.58 E-value=5.5e+02 Score=25.20 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 714 FCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 714 ~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
.|..++..++.+.+.+...+.++-.....++..-.+++........+..++
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~ 143 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHEREREL 143 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443433333334433444444444444444333
No 334
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=29.46 E-value=18 Score=41.86 Aligned_cols=109 Identities=14% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004019 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA 673 (779)
Q Consensus 594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~ 673 (779)
+.+|.||..|+.+|..+.|.++++...|..+++....|+-|--. .|..=..+|.++..++|.-..-++. |+
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~------RLedSE~RLr~QQ~eKd~qmksII~-RL-- 442 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQA------RLEDSEERLRRQQEEKDSQMKSIIS-RL-- 442 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------hhhhhHHHHHHHhhhhHHHHHHHHh-hh--
Confidence 34888999999999999999999999999999888877766532 2333344566666666654443333 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 674 RQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ 711 (779)
Q Consensus 674 ~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~ 711 (779)
-..-..|+++...+..-+..=++-|+++...|..++..
T Consensus 443 ~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaa 480 (495)
T PF12004_consen 443 MAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAA 480 (495)
T ss_dssp --------------------------------------
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHhhhhccccccc
Confidence 00111444444444444444444555555555444443
No 335
>PLN02678 seryl-tRNA synthetase
Probab=29.33 E-value=7.5e+02 Score=28.57 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCcchHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCchhhhhhhchHHHHHHHHHHHHHHHHHhHH
Q 004019 146 DNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKS 225 (779)
Q Consensus 146 ~~~~~~~e~~L~~r~~~tk~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~E~~~L~~~~~~L~~k~k~ 225 (779)
++..+.|...|..|... .+.|..|+. +-.+-..++..++.|.++...
T Consensus 12 ~~~~~~v~~~l~~R~~~-~~~id~il~--------------------------------ld~~~r~l~~~~e~lr~erN~ 58 (448)
T PLN02678 12 GGDPELIRESQRRRFAS-VELVDEVIA--------------------------------LDKEWRQRQFELDSLRKEFNK 58 (448)
T ss_pred ccCHHHHHHHHHhhCCC-HHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCC
Q 004019 226 LTRELQ---SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKH 289 (779)
Q Consensus 226 l~~e~~---~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~ 289 (779)
++.++. .-.+.......+.+.|+.++..+..++..+..++..+-..-.....+.+|.+...+..
T Consensus 59 ~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n 125 (448)
T PLN02678 59 LNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANN 125 (448)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcCCC
No 336
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.90 E-value=7e+02 Score=28.91 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004019 593 LAAAEAEIADMRQKLEAF 610 (779)
Q Consensus 593 l~~~e~ei~~L~~~l~~~ 610 (779)
++.+-+++.+++.++...
T Consensus 61 lrTlva~~k~~r~~~~~l 78 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKL 78 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555554444
No 337
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.88 E-value=6.9e+02 Score=28.96 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQA 719 (779)
Q Consensus 677 ~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~ 719 (779)
+++|-.+...+..+++.+..+-+.++.+-.++......+..++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3455555555555555555555555555555544444444443
No 338
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=28.57 E-value=7.2e+02 Score=26.23 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 631 YLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIEN 710 (779)
Q Consensus 631 L~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee 710 (779)
|-++++.+.+-.-+++..|.++...+....+ ++. ..+...-.....|+..+.+.....+.+..-|+++|.
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e-------~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKE---KQE-------DQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666644333222 111 112233344455555555555555555555554443
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 711 Q-------LRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 711 ~-------lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
. -+.-.--+..++..+.+.-.....+..++-|.+..+..+++-.+++...-.++
T Consensus 120 aNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 120 ANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred hccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23323333334444444433444444455555555555555444444443333
No 339
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.32 E-value=8.3e+02 Score=27.03 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004019 696 ASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQV 750 (779)
Q Consensus 696 ~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~el 750 (779)
.+.+.+.+....+++.-+.+...+..+.+-...+...+...++.+.++...++.+
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555665566555555555555
No 340
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.29 E-value=4.4e+02 Score=31.00 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 713 RFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 713 k~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
..+...++.+..++......+|..++.+-....++..|+..+++++.++.++
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444444444433
No 341
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=27.75 E-value=5.7e+02 Score=24.76 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004019 310 KELMDQASHQLLELKGL 326 (779)
Q Consensus 310 eE~~~la~~Rl~ELe~l 326 (779)
+++.+...+|..+|++.
T Consensus 93 ~eAie~l~k~~~~l~~~ 109 (145)
T COG1730 93 DEAIEFLKKRIEELEKA 109 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 342
>PF13166 AAA_13: AAA domain
Probab=27.72 E-value=1.2e+03 Score=28.39 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 680 LLMDKHMMESEIQQANASLNFFDMKAARIEN 710 (779)
Q Consensus 680 l~~ek~~le~el~~~~~~ie~~~~~i~~~ee 710 (779)
+...+..+...+...+..+.........+..
T Consensus 368 l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~ 398 (712)
T PF13166_consen 368 LNSIIDELNELIEEHNEKIDNLKKEQNELKD 398 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443333333
No 343
>PF15456 Uds1: Up-regulated During Septation
Probab=27.61 E-value=5.2e+02 Score=24.28 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQR 721 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~ 721 (779)
++.+.+..++..+...++.....+. ++-+++..-..+..
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~ 60 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSR 60 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444444444444444444444 44444444433333
No 344
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=27.55 E-value=9.8e+02 Score=27.45 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 004019 510 DQVAEIHKLQAMVQDLTD 527 (779)
Q Consensus 510 ~~~~eik~Lr~q~~~l~e 527 (779)
.+..-+.+|+.-++++.+
T Consensus 296 ~QedL~~DL~eDl~k~~e 313 (424)
T PF03915_consen 296 LQEDLLSDLKEDLKKASE 313 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544444
No 345
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.47 E-value=3.8e+02 Score=24.66 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 004019 715 CLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY 762 (779)
Q Consensus 715 l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~ 762 (779)
+...+..++..+..+...+..++..+.++-.+...|+..-+++...+.
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444443
No 346
>PRK14011 prefoldin subunit alpha; Provisional
Probab=27.43 E-value=97 Score=29.93 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccccccccCCCCCCCc
Q 004019 48 QKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSH 127 (779)
Q Consensus 48 ~aL~rql~~~kre~~~Le~ri~~Le~rq~~~d~~L~~v~~~W~QL~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (779)
+.+.-.|+.|+.++..|...|..|+.-+..++..+.+|+..| .+-.+|..=.++..-. ......
T Consensus 6 q~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~----~~~eiLVPLg~s~yV~------------g~i~d~ 69 (144)
T PRK14011 6 QNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK----TSEEILIPLGPGAFLK------------AKIVDP 69 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCeEEEEcCCCcEEe------------EEecCC
Q ss_pred hHHHHHHhhccCCCCCCC---CCCcchHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 004019 128 DAFLSRLMETGATESSSA---DNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVL 189 (779)
Q Consensus 128 ~~fl~~ll~~~~~~~s~~---~~~~~~~e~~L~~r~~~tk~~l~~l~~~~~~~~~~~~~l~~~l~ 189 (779)
+.++.++ -++ -.+.++.-..+..|.......+..|...+.......+.+...|.
T Consensus 70 dkVlVdI--------GtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~ 126 (144)
T PRK14011 70 DKAILGV--------GSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELE 126 (144)
T ss_pred CeEEEEc--------cCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 347
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.43 E-value=6.5e+02 Score=25.30 Aligned_cols=175 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHH
Q 004019 234 QDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELM 313 (779)
Q Consensus 234 ~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~ 313 (779)
+-++......-.....-+..++..+...+++++.+...-....+..+|.+..................+++=.--.+++.
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~ 80 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELA 80 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--cccccChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 314 DQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEK-SKSEVFKYQALFEKLQVEKDNLAWR 390 (779)
Q Consensus 314 ~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~--~~i~~S~~yk~L~~q~~~-l~~~~~~~r~~~e~Lq~er~~~~~~ 390 (779)
.+++.--.+|+.++..|..|..++..|..++.-. +.-..-..|+.-..-+.. +..+...+..+ =.+-..++++
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~L----Wr~v~~lRr~ 156 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSL----WREVVALRRQ 156 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHH----HHHHHHHHHH
Q ss_pred HHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHH
Q 004019 391 ETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQ 425 (779)
Q Consensus 391 ~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~ri 425 (779)
..|+.... +.-+..+..+++|+
T Consensus 157 f~elr~~T-------------erdL~~~r~e~~r~ 178 (182)
T PF15035_consen 157 FAELRTAT-------------ERDLSDMRAEFART 178 (182)
T ss_pred HHHHHHHH-------------HhhHHHHHHHHHHH
No 348
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=27.34 E-value=8.4e+02 Score=26.60 Aligned_cols=22 Identities=9% Similarity=0.354 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDDMQ 646 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~lq 646 (779)
+++.-.|=+-+|.+...+..|.
T Consensus 47 r~~A~~fA~~ld~~~~kl~~Ms 68 (301)
T PF06120_consen 47 RQEAIEFADSLDELKEKLKEMS 68 (301)
T ss_pred HHHHHHHHHhhHHHHHHHHhcC
Confidence 4455556666666666555553
No 349
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=27.20 E-value=4.7e+02 Score=23.61 Aligned_cols=87 Identities=5% Similarity=0.140 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHH-HHHHHHHHHHHHHHHHHHH
Q 004019 614 MVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL--VLEGV-RARQLQDALLMDKHMMESE 690 (779)
Q Consensus 614 ~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl--~~E~~-k~~q~~~~l~~ek~~le~e 690 (779)
...++......=.|.-.|.++|+.+..-|.+|..+..++..-..+-.++. ++ .+.++ +.+-.+........-|...
T Consensus 10 R~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~K 88 (101)
T PF07303_consen 10 RQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKKKRCEYLHNK 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 34556666666778889999999999999888888877776555555544 33 34455 3466777888888888888
Q ss_pred HHHHHHHHHHH
Q 004019 691 IQQANASLNFF 701 (779)
Q Consensus 691 l~~~~~~ie~~ 701 (779)
+.++...|...
T Consensus 89 L~HIK~~I~~y 99 (101)
T PF07303_consen 89 LSHIKQLIQDY 99 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88877777654
No 350
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.94 E-value=3.9e+02 Score=22.60 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 685 HMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 685 ~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
+.|+..++++-..|..+..++..+.++-..+......+..+...+......+...
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544444444444444433333333
No 351
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.74 E-value=5.9e+02 Score=29.22 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccc
Q 004019 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQD----IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (779)
Q Consensus 206 ~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d----~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~ 281 (779)
-.+-..+...++.|+++.+.++.++...-. ......++++.|..+++++...+..+...+..+-..-.......+|
T Consensus 35 d~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VP 114 (429)
T COG0172 35 DEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVP 114 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccC
Confidence 345566777778888888888888863222 2456788889999999999999888888887776554444444444
No 352
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.71 E-value=1.1e+03 Score=27.80 Aligned_cols=195 Identities=11% Similarity=0.131 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCc---cchhh------hhhhHHHHHHH
Q 004019 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRV---RDEQR------DLRDMESVHKE 311 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~---~~~~~------~~~~l~~~~eE 311 (779)
--++..|+-+++++..+|+.++.-++-++.-.......+..+.. .|- ....+ .+.++ .+-+|+.++..
T Consensus 42 LeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~--~g~-e~EesLLqESaakE~~yl~kI~eleneLKq 118 (772)
T KOG0999|consen 42 LEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVAR--DGE-EREESLLQESAAKEEYYLQKILELENELKQ 118 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cch-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999998887766210000000100000 000 00000 11111 25667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cccccC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSS--------KAFLSVKNQLEKSKSEVFKYQALFEKLQV 382 (779)
Q Consensus 312 ~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~S--------~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~ 382 (779)
++....+-..|.+.+...+..+..-+..+.....-. +-|++. ..|.-|..+.--|.+++..+|.---....
T Consensus 119 ~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEg 198 (772)
T KOG0999|consen 119 LRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEG 198 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhH
Confidence 777666666666666666666655444443331111 111111 14444444433344444433332111111
Q ss_pred HHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004019 383 EKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (779)
Q Consensus 383 er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~ 438 (779)
-+...++-..+.+.-+...+-+.+....++.++...=-+++.=|.++.-|.-++.+
T Consensus 199 lkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 199 LKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 12222222122211122222233444445777777777778888888888888865
No 353
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=26.09 E-value=5.8e+02 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 694 ANASLNFFDMKAARIENQLRFCLDQA 719 (779)
Q Consensus 694 ~~~~ie~~~~~i~~~ee~lk~l~~~~ 719 (779)
++..++.+.-.+..++.+...+...+
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rL 107 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERL 107 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444445444444444444444333
No 354
>PLN03188 kinesin-12 family protein; Provisional
Probab=25.95 E-value=1.6e+03 Score=29.43 Aligned_cols=55 Identities=31% Similarity=0.407 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhHH--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004019 559 AWAHVHSLKSSLDE--------QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRD 613 (779)
Q Consensus 559 ~~~e~~~Lk~~L~e--------~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~ 613 (779)
++-|+.+|+-||.. -++..|++.|.++.+-++++...++.|.+.+.++++..+|.
T Consensus 1178 ~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrk 1240 (1320)
T PLN03188 1178 LRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRK 1240 (1320)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888731 34457888999999999999999999999998888888774
No 355
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.58 E-value=4.9e+02 Score=23.25 Aligned_cols=32 Identities=9% Similarity=0.259 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLR 713 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk 713 (779)
..+..++.++..+...+..+..-..++|.+++
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444443
No 356
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.49 E-value=6.7e+02 Score=24.83 Aligned_cols=139 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEK-SKSEVFKYQALFEKLQVEKDNLAWRE 391 (779)
Q Consensus 313 ~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~-l~~~~~~~r~~~e~Lq~er~~~~~~~ 391 (779)
...|..-..=+..+..++.......--.+.++.+..|-. ...|..|+..+.. -+.+....+...++|+.+-+.+..++
T Consensus 18 ~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~-~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 18 EEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLF-KAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHH
Q 004019 392 TELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471 (779)
Q Consensus 392 ~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~ 471 (779)
++-..+.. ..-=-++.....|+|.+.-.+..++ ......+..-++.+..+|..++-++-
T Consensus 97 ~~ei~~l~------------a~~klD~n~eK~~~r~e~~~~~~ki---------~e~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 97 REEINKLR------------AEVKLDLNLEKGRIREEQAKQELKI---------QELNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred HHHHHHHH------------HHHHHHHHHhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 004019 472 KY 473 (779)
Q Consensus 472 r~ 473 (779)
+|
T Consensus 156 r~ 157 (177)
T PF07798_consen 156 RW 157 (177)
T ss_pred HH
No 357
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.93 E-value=1.1e+03 Score=27.13 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=85.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 617 LSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANA 696 (779)
Q Consensus 617 l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~ 696 (779)
+.++....+.....|++|.+++-.+. ++-.+.+-+.+.++-..|...+=.|..-.-..|..++..+...+..-=.
T Consensus 357 ~~eei~~~eel~~~Lrsele~lp~dv-----~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfa 431 (521)
T KOG1937|consen 357 VDEEIESNEELAEKLRSELEKLPDDV-----QRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFA 431 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCchh-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445555677788899998885532 3555666677777766666666666666666666666666666665434
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHh---HHHHHHHHHHHHHHH
Q 004019 697 SLNFFDMKAARIENQLRFCLD---QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQ--VRGS---LEESQSKVYKSRLTL 768 (779)
Q Consensus 697 ~ie~~~~~i~~~ee~lk~l~~---~~~~leeel~~~~~~le~~r~~~~e~e~~l~e--lr~~---le~~e~~l~e~~~~l 768 (779)
-++.+.-.-....+-.+..+. .+...-.++...-..-.++++.+.+++.++.. .+.. ++.++.-+..+....
T Consensus 432 vtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen 511 (521)
T KOG1937|consen 432 VTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQEN 511 (521)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444443333333333333333 33344444444445556778888888877765 4443 344444444444444
Q ss_pred HHH
Q 004019 769 MEL 771 (779)
Q Consensus 769 ~E~ 771 (779)
.++
T Consensus 512 ~~L 514 (521)
T KOG1937|consen 512 DQL 514 (521)
T ss_pred HHH
Confidence 443
No 358
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=24.63 E-value=1e+03 Score=27.14 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHH
Q 004019 683 DKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANL-----------ENTQKRLSDVRKSSVQVR 751 (779)
Q Consensus 683 ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~l-----------e~~r~~~~e~e~~l~elr 751 (779)
++..+..-++.+...+--+...+..+-+.+..++..+..--.+-+++++.+ +-+...+..+.+.+.+.+
T Consensus 480 ~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~ 559 (583)
T KOG3809|consen 480 KMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTK 559 (583)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666666666655555555554444 344555566666666666
Q ss_pred HhHHHHHHHHHH
Q 004019 752 GSLEESQSKVYK 763 (779)
Q Consensus 752 ~~le~~e~~l~e 763 (779)
..+..+...+-.
T Consensus 560 e~i~~~r~~IL~ 571 (583)
T KOG3809|consen 560 EEISKARGRILN 571 (583)
T ss_pred HHHHHHHHHHhh
Confidence 666555554433
No 359
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=24.56 E-value=7.7e+02 Score=25.20 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004019 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELI 93 (779)
Q Consensus 62 ~~Le~ri~~Le~rq~~~d~~L~~v~~~W~QL~ 93 (779)
.+|+.+|+-++.-|.+|..-|.+|..|-++|.
T Consensus 2 ~ELdakielfrsvq~t~~~Llk~i~~yq~~l~ 33 (204)
T cd07661 2 AELDAKLELFRSVQDTCLELLKIIDNYQERLC 33 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999988774
No 360
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.50 E-value=4.3e+02 Score=22.32 Aligned_cols=13 Identities=8% Similarity=0.366 Sum_probs=4.9
Q ss_pred HHHHHhHHHHHHh
Q 004019 741 SDVRKSSVQVRGS 753 (779)
Q Consensus 741 ~e~e~~l~elr~~ 753 (779)
..+......++..
T Consensus 42 ~~L~~en~~L~~e 54 (72)
T PF06005_consen 42 EELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 361
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=24.33 E-value=3.3e+02 Score=25.70 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 004019 302 LRDMESVHKELMDQASHQLLEL 323 (779)
Q Consensus 302 ~~~l~~~~eE~~~la~~Rl~EL 323 (779)
+..+++++..+...=+-|..+.
T Consensus 29 l~~LEae~q~L~~kE~~r~~~~ 50 (126)
T PF09403_consen 29 LNQLEAEYQQLEQKEEARYNEE 50 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444444333
No 362
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.18 E-value=4.1e+02 Score=28.27 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004019 715 CLDQAQRLAEDRSQNSANLENTQKRLSDVRKS 746 (779)
Q Consensus 715 l~~~~~~leeel~~~~~~le~~r~~~~e~e~~ 746 (779)
|+.++..+..|+..+.+.+|....++..+.+.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333333
No 363
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=23.89 E-value=6e+02 Score=23.76 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 237 DAKDKAKLNRLKGELESAVKELEECNCKL 265 (779)
Q Consensus 237 ~~~~~~e~~~L~~~Le~~~~el~~~~kkl 265 (779)
..+...++...+.+.+.+..++-.-.+||
T Consensus 37 d~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL 65 (125)
T PF03245_consen 37 DAKYTKELADAKAEIDRLRADLAAGNKRL 65 (125)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCCceE
Confidence 33334444444555555555554444444
No 364
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.74 E-value=1.1e+03 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004019 595 AAEAEIADMRQKLEAFKRDMVSLSDAL 621 (779)
Q Consensus 595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l 621 (779)
...+++..++.++...+.....|.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777766555555444
No 365
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.64 E-value=6.5e+02 Score=27.79 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 004019 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQL 676 (779)
Q Consensus 597 e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~ 676 (779)
.+-.+.+|-.. +++.+-+.+|++.|..-.|+ .+.-
T Consensus 213 sa~~eklR~r~-----------------eeeme~~~aeq~slkRt~Ee----------------------------L~~G 247 (365)
T KOG2391|consen 213 SAVREKLRRRR-----------------EEEMERLQAEQESLKRTEEE----------------------------LNIG 247 (365)
T ss_pred HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhHHH----------------------------HHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFC 715 (779)
Q Consensus 677 ~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l 715 (779)
+..|...++.|+.++..++..++-+...++..-++.+.+
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~ 286 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENL 286 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccC
No 366
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.59 E-value=5.7e+02 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=9.9
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKSRLTL 768 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~~~~l 768 (779)
....+..++..+..+...+..+...+
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 367
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.27 E-value=4.2e+02 Score=24.23 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=26.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 616 SLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (779)
Q Consensus 616 ~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~ 653 (779)
++-+.+...++....++.+|+.|...+..+-++|.+|.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777777777777777777777777766
No 368
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=23.02 E-value=28 Score=41.16 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019 677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEE 756 (779)
Q Consensus 677 ~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~ 756 (779)
......++..|...|+++.....-+...|.-+.+.+..+...+..-..+.+.+...|...++. -+..+.-|+.+|..
T Consensus 430 ~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~---t~~~~~pl~~~L~e 506 (539)
T PF10243_consen 430 RESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSI---TDEALEPLKAQLAE 506 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhHHHHHHHH
Confidence 336667888888888888888888888888888888888888888777777777777766666 55667778888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004019 757 SQSKVYKSRLTLMELQIE 774 (779)
Q Consensus 757 ~e~~l~e~~~~l~E~~~~ 774 (779)
++..|.+.+.++..++..
T Consensus 507 le~~I~~~~~~i~~~ka~ 524 (539)
T PF10243_consen 507 LEQQIKDQQDKICAVKAN 524 (539)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777766654
No 369
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=22.89 E-value=2.7e+02 Score=21.58 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004019 41 AVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQ 75 (779)
Q Consensus 41 ~vl~fQn~aL~rql~~~kre~~~Le~ri~~Le~rq 75 (779)
.++.||++... -++.--+..+.+..|++.|+.++
T Consensus 13 slv~FQ~~v~~-~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 13 SLVAFQNKVTS-ALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc
No 370
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=22.80 E-value=1.7e+02 Score=32.17 Aligned_cols=125 Identities=10% Similarity=0.182 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK 704 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~ 704 (779)
......++..+-.+..+.+.|+..-..+...+..+.. .+..+...+..+...+......
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss---------------------~L~~l~~sl~~~~s~L~sLsst 85 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSS---------------------DLQDLASSLADMTSELNSLSST 85 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777766665555544443333 3333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004019 705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLME 770 (779)
Q Consensus 705 i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E 770 (779)
|..+...+..+...+..+..-+..+...+-.++..+..+...+.-|+..+-...-.+.+++.+++.
T Consensus 86 V~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 86 VTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 444444444444444444444444444444444444445555555555444444444444444443
No 371
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.80 E-value=1.3e+03 Score=27.23 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQ 737 (779)
Q Consensus 668 ~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r 737 (779)
.|+=|+-+...+..++-+.+...-+++. ++.....+++.-..+...-+.++....-+.....++++++
T Consensus 488 ~Ekkk~aq~lee~rrred~~~d~sqhlq--~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr 555 (654)
T KOG4809|consen 488 LEKKKNAQLLEEVRRREDSMADNSQHLQ--IEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLR 555 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHH--HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555443 3333333333333333333333333333333344444433
No 372
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.49 E-value=7.1e+02 Score=24.06 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004019 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQ 640 (779)
Q Consensus 595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~ 640 (779)
.+..+...||.+|-..+-.+..+-..-..-.+...+|..||..|.+
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4445555555555554333333333333333445555555555544
No 373
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=22.43 E-value=7.2e+02 Score=24.12 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019 731 ANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 731 ~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~ 771 (779)
+.++..|++|.-+..+++-+...+...++.+.++...++|.
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEk 124 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEK 124 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 374
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=22.39 E-value=4.1e+02 Score=22.16 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
.+++.++.++..+++.....+..+..+-+.|=.=..++-.+.......-..+...+++
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~ 59 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAE 59 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666665555554444444444444443333344444443
No 375
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.36 E-value=4.2e+02 Score=21.38 Aligned_cols=38 Identities=18% Similarity=0.401 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQ 648 (779)
Q Consensus 597 e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeq 648 (779)
...+..|...+... +.+...|..++..+...+..|..+
T Consensus 25 k~~~~~Le~~~~~L--------------~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 25 KQYIEELEEKVEEL--------------ESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666555 445555555555555555554443
No 376
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=22.28 E-value=9.1e+02 Score=26.32 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhh-hHHHHHHHHHHHHH
Q 004019 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSA-DQVAEIHKLQAMVQ 523 (779)
Q Consensus 447 ~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~-~~~~eik~Lr~q~~ 523 (779)
.+-.-|..|..-|.+|=..|-.|+.+.|+.+.+|.. +-..+-.+++.+.+.-+ ..+.++-.||++|+
T Consensus 186 ~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~----------aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK 253 (302)
T PF07139_consen 186 KIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILD----------ARQKKAEELKRLTDRASQMSEEQLAELRADIK 253 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 444445555555566666666666665554444333 22233334555544432 44566677777654
No 377
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=22.14 E-value=54 Score=35.86 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ 758 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e 758 (779)
.+.++.-+++..+..+...+......+..+...+..+...+..+..++..++..+-.++..+..+...+.++...+...+
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ 111 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHS 111 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhh
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 004019 759 SKVYKSRLTLMELQI 773 (779)
Q Consensus 759 ~~l~e~~~~l~E~~~ 773 (779)
..+-.++..++.+..
T Consensus 112 ssIS~Lqs~v~~lsT 126 (326)
T PF04582_consen 112 SSISDLQSSVSALST 126 (326)
T ss_dssp ------HHHHHHHHH
T ss_pred hhHHHHHHhhhhhhh
Confidence 444444444444433
No 378
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=21.59 E-value=8.9e+02 Score=24.84 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 004019 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE 97 (779)
Q Consensus 62 ~~Le~ri~~Le~rq~~~d~~L~~v~~~W~QL~~~i~ 97 (779)
.+|+.+|+.|+.-+.+|..-+..+.+|-+.|-.-+.
T Consensus 2 ~eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q 37 (203)
T cd00011 2 LELELQLELLRETKRKYESVLQLGRALTAHLYSLSQ 37 (203)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999888755443
No 379
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=21.52 E-value=9e+02 Score=24.90 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 004019 638 IGQSYDDMQTQNQQLL 653 (779)
Q Consensus 638 l~~A~e~lqeqn~rl~ 653 (779)
+..|+..+.-+..|+.
T Consensus 106 l~na~a~lehq~~R~~ 121 (221)
T PF05700_consen 106 LDNAYAQLEHQRLRLE 121 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 380
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=21.39 E-value=8.4e+02 Score=24.47 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004019 718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVK 777 (779)
Q Consensus 718 ~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~le~ 777 (779)
.+..++.+...+....-. .+.-+..|-..+-.-+.+-+-++++.+++++.++.
T Consensus 121 kLe~LE~E~~rLt~~Q~~-------ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 121 KLEKLEKEYLRLTATQSL-------AETKIKELEEKLQEEEHQRKLVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344444444444433333 44455555566666677777788888888887765
No 381
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=21.35 E-value=7.7e+02 Score=25.72 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=10.9
Q ss_pred cchHHHHhhhhhhH
Q 004019 149 PNQMEEDRETGIPR 162 (779)
Q Consensus 149 ~~~~e~~L~~r~~~ 162 (779)
.+.++.+|+.|...
T Consensus 159 Gd~l~~eLqkr~~~ 172 (289)
T COG4985 159 GDPLERELQKRLLE 172 (289)
T ss_pred CcHHHHHHHHHHHH
Confidence 46788999988773
No 382
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.32 E-value=6.3e+02 Score=22.98 Aligned_cols=62 Identities=10% Similarity=0.006 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 004019 694 ANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLE 755 (779)
Q Consensus 694 ~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le 755 (779)
+.....-++..+-.-..+-..|..++-.-+..++.+.+.++.+.-.-..+.+.+..|+..++
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444444444443333334444444444433
No 383
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.32 E-value=1.6e+03 Score=27.59 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIEN 710 (779)
Q Consensus 669 E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee 710 (779)
|++.+......|-.+.+.+..++.++...-+.+...+..+--
T Consensus 210 ermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~ 251 (916)
T KOG0249|consen 210 ERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRG 251 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333355555555555555555555544444444443333333
No 384
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=21.23 E-value=8.1e+02 Score=28.38 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 632 LSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ 711 (779)
Q Consensus 632 ~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~ 711 (779)
..|+..+..-|+++.+.-.++--.+.+..+...|... +...++-.+.+....++...+.-+.++-.
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~t--------------k~~~ldvklkha~~~vda~ik~rr~ae~d 92 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAET--------------KRSALDVKLKHARNQVDAEIKRRRRAEAD 92 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------------hhhhccchHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777666666555544444443333333 33334444444444444444444444444
Q ss_pred HHHHHHHH
Q 004019 712 LRFCLDQA 719 (779)
Q Consensus 712 lk~l~~~~ 719 (779)
...+..+.
T Consensus 93 ~~~~E~~i 100 (604)
T KOG3564|consen 93 CEKLETQI 100 (604)
T ss_pred HHHHHHHH
Confidence 44443333
No 385
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.09 E-value=1.4e+02 Score=29.50 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 004019 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (779)
Q Consensus 302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~ 347 (779)
++|++..|+.+.+-.+--..|| .|...|..+++.|+.+++|+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777666666666 44555666666666665554
No 386
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.88 E-value=7.8e+02 Score=24.53 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASL 698 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~i 698 (779)
.+..+...++..+..+..+.
T Consensus 122 ~li~~l~~~~~~~~~~~kq~ 141 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQA 141 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333
No 387
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.83 E-value=7.3e+02 Score=28.40 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=14.8
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~~~~l~E~ 771 (779)
+-.+.+.++.++..++.++..+...+.+.
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555444
No 388
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.77 E-value=5.2e+02 Score=21.81 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004019 581 TAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDAL 621 (779)
Q Consensus 581 ~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l 621 (779)
+.......+.++...-+....+|+..+..+.+.-..|.++.
T Consensus 11 ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv 51 (70)
T PF04899_consen 11 ALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQV 51 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344445666666666666666666666644333333333
No 389
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.71 E-value=1.7e+03 Score=27.76 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 004019 206 QSEVKNLRLALM 217 (779)
Q Consensus 206 ~~E~~~L~~~~~ 217 (779)
+++...+|..+.
T Consensus 150 S~eL~~iR~~~~ 161 (782)
T PRK00409 150 SEKLRGIRRQLR 161 (782)
T ss_pred CHHHHHHHHHHH
Confidence 334444433333
No 390
>PF15456 Uds1: Up-regulated During Septation
Probab=20.62 E-value=7.1e+02 Score=23.38 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFC 715 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l 715 (779)
.|..+...|..++..+...+. ...+++.+-..+-.+
T Consensus 26 ~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 26 ELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 555555555555555555555 444444444444444
No 391
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.56 E-value=8.8e+02 Score=24.40 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 676 LQDALLMDKHMMESEIQQANASLNFF 701 (779)
Q Consensus 676 ~~~~l~~ek~~le~el~~~~~~ie~~ 701 (779)
.+..+..+++.+...+..+...++..
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 392
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.37 E-value=73 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhcc
Q 004019 60 EYSALENKFAQLKERQQ 76 (779)
Q Consensus 60 e~~~Le~ri~~Le~rq~ 76 (779)
++..+..||.+|+++..
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45555666666665543
No 393
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.30 E-value=7.8e+02 Score=28.16 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhh-h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccc
Q 004019 208 EVKNLRLALMDLHLKHKSLTRELQSRQ-D--IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (779)
Q Consensus 208 E~~~L~~~~~~L~~k~k~l~~e~~~~~-d--~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~ 281 (779)
+-..|+..++.|..+.+.++.++.... + .......+.+.|+.++..+...+..++.++..+-..-.......+|
T Consensus 36 ~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP 112 (425)
T PRK05431 36 ERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVP 112 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 445555666666666666666665421 1 2334667778888888888888888877776655443333344444
No 394
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.28 E-value=8.5e+02 Score=28.74 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004019 687 MESEIQQANASLNFFDMK 704 (779)
Q Consensus 687 le~el~~~~~~ie~~~~~ 704 (779)
++...+.++.+|++...+
T Consensus 98 le~krqel~seI~~~n~k 115 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTK 115 (907)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 333333333333333333
Done!