Query 004019
Match_columns 779
No_of_seqs 166 out of 237
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.8 0.00022 7.5E-09 73.3 41.5 91 685-775 184-274 (284)
2 1c1g_A Tropomyosin; contractIl 98.6 0.00098 3.4E-08 68.3 43.1 83 682-764 195-277 (284)
3 1i84_S Smooth muscle myosin he 97.9 1.7E-05 5.9E-10 99.5 10.3 21 744-764 1143-1163(1184)
4 1i84_S Smooth muscle myosin he 97.8 4.1E-05 1.4E-09 96.1 11.7 83 678-760 1084-1166(1184)
5 2v71_A Nuclear distribution pr 97.1 0.059 2E-06 52.5 20.1 115 353-482 2-116 (189)
6 3na7_A HP0958; flagellar bioge 96.5 0.34 1.2E-05 49.9 21.9 62 671-732 86-147 (256)
7 2v71_A Nuclear distribution pr 96.4 0.6 2.1E-05 45.4 21.3 48 719-766 90-137 (189)
8 3vkg_A Dynein heavy chain, cyt 94.4 8.7 0.0003 52.5 29.0 167 589-765 1925-2097(3245)
9 3vkg_A Dynein heavy chain, cyt 94.0 11 0.00039 51.3 28.8 17 559-575 1932-1948(3245)
10 2dfs_A Myosin-5A; myosin-V, in 93.7 1.8 6.1E-05 53.5 19.2 51 594-647 924-974 (1080)
11 3u59_A Tropomyosin beta chain; 93.6 2.9 9.8E-05 36.5 15.2 78 679-756 20-97 (101)
12 3u1c_A Tropomyosin alpha-1 cha 93.3 3.8 0.00013 35.7 15.7 38 717-754 58-95 (101)
13 3u59_A Tropomyosin beta chain; 92.2 5.4 0.00018 34.7 15.4 86 685-770 5-90 (101)
14 3i00_A HIP-I, huntingtin-inter 92.2 1.1 3.7E-05 40.5 10.6 104 321-432 15-118 (120)
15 3u1c_A Tropomyosin alpha-1 cha 92.1 5.6 0.00019 34.7 15.4 74 689-762 9-82 (101)
16 2dfs_A Myosin-5A; myosin-V, in 91.8 2.6 8.8E-05 52.1 17.0 19 153-171 394-412 (1080)
17 3ol1_A Vimentin; structural ge 90.7 9.1 0.00031 34.3 15.2 37 595-645 17-53 (119)
18 2fxo_A Myosin heavy chain, car 89.8 11 0.00039 34.1 18.4 46 592-637 14-59 (129)
19 4gkw_A Spindle assembly abnorm 89.4 11 0.00039 33.7 17.6 102 412-529 10-111 (167)
20 2v66_B Nuclear distribution pr 89.0 5.5 0.00019 35.2 11.9 97 412-520 2-98 (111)
21 2efr_A General control protein 88.6 16 0.00055 34.3 24.7 52 717-768 98-149 (155)
22 3o0z_A RHO-associated protein 87.1 21 0.00071 33.9 21.6 45 686-730 94-138 (168)
23 3ol1_A Vimentin; structural ge 86.7 8.8 0.0003 34.4 12.2 93 353-468 12-104 (119)
24 3oja_B Anopheles plasmodium-re 86.2 4.4 0.00015 46.5 12.7 49 708-756 528-576 (597)
25 3oja_B Anopheles plasmodium-re 84.8 10 0.00036 43.2 15.0 63 704-766 517-579 (597)
26 2b9c_A Striated-muscle alpha t 84.6 10 0.00034 35.4 11.9 68 673-740 71-138 (147)
27 1ic2_A Tropomyosin alpha chain 83.2 17 0.00057 30.2 11.6 29 691-719 8-36 (81)
28 3q8t_A Beclin-1; autophagy, AT 83.0 22 0.00074 30.6 14.2 41 592-632 12-52 (96)
29 3swk_A Vimentin; cytoskeleton, 82.6 19 0.00064 30.3 11.7 20 625-644 13-32 (86)
30 2b9c_A Striated-muscle alpha t 82.1 27 0.00091 32.5 13.7 88 682-769 52-139 (147)
31 3iox_A AGI/II, PA; alpha helix 82.1 39 0.0013 37.3 16.9 26 585-610 3-28 (497)
32 2v4h_A NF-kappa-B essential mo 81.5 19 0.00065 31.5 11.4 26 580-605 34-59 (110)
33 3q8t_A Beclin-1; autophagy, AT 81.5 25 0.00085 30.2 15.3 82 684-765 6-94 (96)
34 2ocy_A RAB guanine nucleotide 81.0 36 0.0012 31.8 18.8 43 733-775 103-145 (154)
35 1deq_A Fibrinogen (alpha chain 80.5 55 0.0019 34.9 16.7 49 679-727 110-158 (390)
36 1ic2_A Tropomyosin alpha chain 79.8 15 0.00052 30.4 10.1 50 679-728 10-59 (81)
37 2v66_B Nuclear distribution pr 79.0 34 0.0011 30.2 14.0 55 715-769 33-87 (111)
38 3ghg_A Fibrinogen alpha chain; 77.0 36 0.0012 37.8 14.5 41 686-726 114-154 (562)
39 3o0z_A RHO-associated protein 76.5 53 0.0018 31.1 21.9 45 679-723 94-138 (168)
40 3tnu_B Keratin, type II cytosk 73.1 53 0.0018 29.6 13.0 43 732-778 76-118 (129)
41 3tnu_A Keratin, type I cytoske 72.4 47 0.0016 30.1 12.2 43 732-778 78-120 (131)
42 2w83_C C-JUN-amino-terminal ki 70.5 41 0.0014 27.4 9.7 69 637-712 6-74 (77)
43 3bas_A Myosin heavy chain, str 69.9 49 0.0017 27.8 11.9 73 682-768 14-86 (89)
44 2e7s_A RAB guanine nucleotide 68.8 16 0.00056 33.3 8.0 42 582-623 87-128 (135)
45 3oja_A Leucine-rich immune mol 68.8 89 0.003 34.5 16.1 38 730-767 441-478 (487)
46 1uii_A Geminin; human, DNA rep 65.6 37 0.0013 28.2 8.7 51 312-381 30-80 (83)
47 3tnu_A Keratin, type I cytoske 65.6 66 0.0023 29.1 11.6 25 672-696 102-126 (131)
48 3s4r_A Vimentin; alpha-helix, 62.5 72 0.0025 27.1 13.1 74 578-660 10-83 (93)
49 2lw1_A ABC transporter ATP-bin 61.8 51 0.0017 27.7 9.4 61 320-380 21-82 (89)
50 3tnu_B Keratin, type II cytosk 61.6 91 0.0031 28.0 13.1 25 672-696 100-124 (129)
51 3nmd_A CGMP dependent protein 60.8 22 0.00076 28.8 6.4 47 712-758 21-67 (72)
52 1wt6_A Myotonin-protein kinase 60.7 60 0.0021 26.8 9.0 33 239-271 42-74 (81)
53 3cvf_A Homer-3, homer protein 59.1 75 0.0026 26.2 9.9 66 667-732 5-70 (79)
54 2fxo_A Myosin heavy chain, car 57.3 1.1E+02 0.0037 27.5 19.4 37 703-739 62-98 (129)
55 2jee_A YIIU; FTSZ, septum, coi 57.3 82 0.0028 26.1 10.1 56 592-661 14-69 (81)
56 1go4_E MAD1 (mitotic arrest de 57.3 14 0.00049 31.9 5.1 27 320-346 18-44 (100)
57 2e7s_A RAB guanine nucleotide 56.6 55 0.0019 29.8 9.1 38 737-774 95-132 (135)
58 2k48_A Nucleoprotein; viral pr 56.5 93 0.0032 26.9 9.9 29 717-745 35-63 (107)
59 3swk_A Vimentin; cytoskeleton, 56.2 88 0.003 26.1 11.7 75 679-753 4-78 (86)
60 1m1j_B Fibrinogen beta chain; 54.5 2.5E+02 0.0087 30.9 16.8 24 746-769 169-192 (464)
61 3s4r_A Vimentin; alpha-helix, 54.4 1E+02 0.0034 26.2 12.9 30 743-772 61-90 (93)
62 3ghg_A Fibrinogen alpha chain; 54.3 1.3E+02 0.0045 33.4 13.2 47 679-725 114-160 (562)
63 2efr_A General control protein 51.4 1.6E+02 0.0053 27.5 22.3 51 673-723 40-90 (155)
64 2v4h_A NF-kappa-B essential mo 51.4 1.2E+02 0.0043 26.4 12.2 28 582-609 29-56 (110)
65 2ocy_A RAB guanine nucleotide 50.8 1.6E+02 0.0054 27.5 19.8 15 594-608 16-30 (154)
66 1wlq_A Geminin; coiled-coil; 2 50.4 70 0.0024 26.6 7.9 48 312-378 22-69 (83)
67 3m91_A Proteasome-associated A 50.1 47 0.0016 25.1 6.3 40 208-254 10-49 (51)
68 1xaw_A Occludin; coiled-coil, 49.1 1.6E+02 0.0054 27.0 12.6 86 307-394 45-135 (140)
69 3cvf_A Homer-3, homer protein 48.0 1.2E+02 0.004 25.1 9.2 42 688-729 12-53 (79)
70 2wvr_A Geminin; DNA replicatio 46.7 68 0.0023 31.1 8.4 52 312-382 99-150 (209)
71 2zxx_A Geminin; coiled-coil, c 45.3 1.2E+02 0.0041 25.0 8.5 33 312-344 18-50 (79)
72 1deq_A Fibrinogen (alpha chain 45.2 3.1E+02 0.011 29.2 16.6 36 603-648 54-89 (390)
73 1jcd_A Major outer membrane li 44.8 82 0.0028 23.8 6.9 27 241-267 24-50 (52)
74 3m91_A Proteasome-associated A 43.1 65 0.0022 24.3 6.1 37 603-639 14-50 (51)
75 2eqb_B RAB guanine nucleotide 42.9 1.6E+02 0.0055 25.2 14.8 55 678-732 8-62 (97)
76 2w83_C C-JUN-amino-terminal ki 41.5 1.4E+02 0.0049 24.3 9.6 67 682-748 9-75 (77)
77 3a7p_A Autophagy protein 16; c 39.4 2.4E+02 0.0081 26.2 12.6 53 676-728 69-121 (152)
78 1m1j_A Fibrinogen alpha subuni 38.2 3.6E+02 0.012 29.4 13.3 46 683-728 112-157 (491)
79 3i00_A HIP-I, huntingtin-inter 37.8 2.2E+02 0.0075 25.3 11.4 19 676-694 16-34 (120)
80 3lbx_A Spectrin alpha chain, e 37.4 2.5E+02 0.0085 25.8 14.6 82 301-384 30-118 (161)
81 2b5u_A Colicin E3; high resolu 37.2 4.6E+02 0.016 28.9 20.1 42 594-635 317-358 (551)
82 4gkw_A Spindle assembly abnorm 37.1 2.3E+02 0.0079 25.4 22.2 62 559-643 16-77 (167)
83 3mq9_A Bone marrow stromal ant 36.7 4.4E+02 0.015 28.5 17.8 69 694-765 402-470 (471)
84 2no2_A HIP-I, huntingtin-inter 35.7 2.2E+02 0.0075 24.8 16.0 39 653-695 4-42 (107)
85 3a7p_A Autophagy protein 16; c 35.4 2.7E+02 0.0093 25.7 12.3 49 599-647 69-117 (152)
86 2ic9_A Nucleocapsid protein; h 35.2 2.1E+02 0.0072 24.4 9.2 21 722-742 10-30 (96)
87 4fi5_A Nucleoprotein; structur 34.6 2.3E+02 0.008 24.7 9.5 24 721-744 26-49 (113)
88 2ic6_A Nucleocapsid protein; h 33.1 2E+02 0.0069 23.6 9.7 27 719-745 7-33 (78)
89 3twe_A Alpha4H; unknown functi 33.0 57 0.0019 20.3 3.5 21 245-265 4-24 (27)
90 1wt6_A Myotonin-protein kinase 32.9 2.1E+02 0.0071 23.6 10.2 42 722-763 29-70 (81)
91 3jsv_C NF-kappa-B essential mo 32.3 2.3E+02 0.008 24.0 9.8 15 593-607 18-32 (94)
92 1ci6_A Transcription factor AT 31.7 1.2E+02 0.0042 23.6 6.5 34 357-390 26-59 (63)
93 1l8d_A DNA double-strand break 30.0 2.6E+02 0.009 23.9 12.0 37 733-769 66-102 (112)
94 2jee_A YIIU; FTSZ, septum, coi 29.7 2.4E+02 0.0082 23.3 11.9 43 713-755 23-65 (81)
95 3mq7_A Bone marrow stromal ant 28.7 3E+02 0.01 24.2 13.5 81 692-775 28-108 (121)
96 2yy0_A C-MYC-binding protein; 28.2 88 0.003 23.7 4.8 22 205-226 24-45 (53)
97 2zqm_A Prefoldin beta subunit 28.0 2.9E+02 0.0098 23.7 11.7 26 743-768 82-107 (117)
98 4emc_A Monopolin complex subun 27.1 2E+02 0.0069 27.6 8.1 59 41-100 23-82 (190)
99 2b5u_A Colicin E3; high resolu 26.5 6.8E+02 0.023 27.6 21.4 46 602-647 295-342 (551)
100 1go4_E MAD1 (mitotic arrest de 26.0 2.1E+02 0.0073 24.6 7.4 61 412-476 18-90 (100)
101 2yy0_A C-MYC-binding protein; 25.5 1.2E+02 0.004 23.0 5.0 32 625-656 18-49 (53)
102 1fxk_A Prefoldin; archaeal pro 25.2 3.1E+02 0.01 23.1 11.2 26 677-702 10-35 (107)
103 3qh9_A Liprin-beta-2; coiled-c 25.1 2.9E+02 0.0099 22.7 9.6 48 651-698 23-70 (81)
104 3ra3_A P1C; coiled coil domain 24.9 81 0.0028 19.8 3.2 24 41-64 3-26 (28)
105 2i1j_A Moesin; FERM, coiled-co 24.5 1.6E+02 0.0053 33.6 8.3 6 562-567 301-306 (575)
106 4g1a_A AQ-C16C19 peptide; heli 24.1 57 0.002 21.1 2.5 26 61-86 2-27 (32)
107 2xu6_A MDV1 coiled coil; prote 23.3 2.1E+02 0.0072 23.1 6.3 52 597-648 20-71 (72)
108 1g6u_A Domain swapped dimer; d 23.0 1.8E+02 0.0063 20.4 5.1 27 249-275 20-46 (48)
109 3jsv_C NF-kappa-B essential mo 22.9 3.5E+02 0.012 22.9 10.4 16 711-726 41-56 (94)
110 2eqb_B RAB guanine nucleotide 22.7 3.6E+02 0.012 23.0 14.6 19 640-658 5-23 (97)
111 3uux_B Mitochondrial division 22.3 4.4E+02 0.015 26.2 9.8 58 673-730 147-204 (242)
112 2lw1_A ABC transporter ATP-bin 22.2 3.4E+02 0.011 22.5 8.4 52 592-647 30-84 (89)
113 1gd2_E Transcription factor PA 22.1 3.1E+02 0.01 22.0 8.0 55 584-652 14-69 (70)
114 4h22_A Leucine-rich repeat fli 21.6 3.9E+02 0.013 23.0 10.3 65 692-756 19-83 (103)
115 2xdj_A Uncharacterized protein 21.5 3.5E+02 0.012 22.4 10.3 28 715-742 25-52 (83)
116 1wle_A Seryl-tRNA synthetase; 21.4 4.6E+02 0.016 29.1 11.2 23 747-769 125-147 (501)
117 2dq0_A Seryl-tRNA synthetase; 20.7 3.4E+02 0.012 29.7 9.9 29 743-771 74-102 (455)
118 3qne_A Seryl-tRNA synthetase, 20.6 3.7E+02 0.013 29.8 10.1 65 707-771 37-104 (485)
119 2i1j_A Moesin; FERM, coiled-co 20.4 1.2E+02 0.0041 34.5 6.3 50 586-635 337-386 (575)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.77 E-value=0.00022 Score=73.31 Aligned_cols=91 Identities=14% Similarity=0.240 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 685 HMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 685 ~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
..+..++..+...+......+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (284)
T 1c1g_A 184 ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444444444444444444444444444444445555555555555555555
Q ss_pred HHHHHHHHHHH
Q 004019 765 RLTLMELQIEL 775 (779)
Q Consensus 765 ~~~l~E~~~~l 775 (779)
...+..+...+
T Consensus 264 ~~~~~~~~~~~ 274 (284)
T 1c1g_A 264 KLKYKAISEEL 274 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.59 E-value=0.00098 Score=68.32 Aligned_cols=83 Identities=7% Similarity=0.152 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV 761 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l 761 (779)
..+..+...+..+...+..+...+..++..+..+...+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
T 1c1g_A 195 EEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHH
Q 004019 762 YKS 764 (779)
Q Consensus 762 ~e~ 764 (779)
..+
T Consensus 275 ~~~ 277 (284)
T 1c1g_A 275 DHA 277 (284)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.93 E-value=1.7e-05 Score=99.54 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHhHHHHHHhHHHHHHHHHHH
Q 004019 744 RKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 744 e~~l~elr~~le~~e~~l~e~ 764 (779)
+....++...++.+...+.++
T Consensus 1143 e~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1143 EKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.85 E-value=4.1e-05 Score=96.11 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004019 678 DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEES 757 (779)
Q Consensus 678 ~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~ 757 (779)
..+..++..++.++..+...++.....+..++..+..+..++..+.+++......+........++...+.+++.+++.+
T Consensus 1084 ~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444445555555555555555555555444444444555555666666666666655
Q ss_pred HHH
Q 004019 758 QSK 760 (779)
Q Consensus 758 e~~ 760 (779)
...
T Consensus 1164 ~~v 1166 (1184)
T 1i84_S 1164 LDT 1166 (1184)
T ss_dssp ---
T ss_pred hhH
Confidence 443
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.09 E-value=0.059 Score=52.51 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 004019 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (779)
Q Consensus 353 S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L 432 (779)
.|.|......+.+|+..+.++...+..++.+.+.|...=+++++..|..- ..++.++..|...+.++..+.+.+
T Consensus 2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL------~~~Ek~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 2 AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQL------VQAEQRNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999999999999999999999777556654333111 123778888888888888888888
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHH
Q 004019 433 EMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI 482 (779)
Q Consensus 433 ~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~ 482 (779)
..++... ..+.-..+++|+.+|..|......++...-++.-
T Consensus 76 k~K~~~~---------~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 76 KEKLEHQ---------YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888544 4455577888888888888887776655433333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.48 E-value=0.34 Score=49.88 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 671 VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN 732 (779)
Q Consensus 671 ~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~ 732 (779)
++....|.++..+++.++.++..+...+-.....+..+...+..+...+..+..++......
T Consensus 86 v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 86 IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777776666666666666666666666655444433
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.38 E-value=0.6 Score=45.40 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 004019 719 AQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRL 766 (779)
Q Consensus 719 ~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~ 766 (779)
...+.+++..+......++..+++++....+|-+..=.+..-+.+++.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~ 137 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQ 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence 444444444444444444444444444444444443333333333333
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.43 E-value=8.7 Score=52.48 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (779)
Q Consensus 589 ~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~ 668 (779)
...||..+..++++|+..|.. .+..|..+..+.+.++.+|..-.+.-+.-...-.. ...+......++..
T Consensus 1925 GL~KL~et~~~V~~l~~~L~~-------~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~---~~~~~~~~~~ei~~ 1994 (3245)
T 3vkg_A 1925 GLKKLRDTEAQVKDLQVSLAQ-------KNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARE---LQVQLDVRNKEIAV 1994 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 334555566666666665544 45577778888888888886654433321111110 11111111111111
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 669 EGVRARQLQ------DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSD 742 (779)
Q Consensus 669 E~~k~~q~~------~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e 742 (779)
.+..+...+ .-++.+...++.++...+..+......+..+++++..|..+...+..+...+...++....++..
T Consensus 1995 ~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 1995 QKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 12344555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKSR 765 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~~ 765 (779)
.++-+..|-.+...=...+.+++
T Consensus 2075 A~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2075 SIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccHHHHHHHHH
Confidence 55555555444443333333333
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.97 E-value=11 Score=51.35 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhHHhcH
Q 004019 559 AWAHVHSLKSSLDEQSL 575 (779)
Q Consensus 559 ~~~e~~~Lk~~L~e~~~ 575 (779)
+..+|+.|+..|.....
T Consensus 1932 t~~~V~~l~~~L~~~~~ 1948 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNR 1948 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666655443
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.66 E-value=1.8 Score=53.53 Aligned_cols=51 Identities=16% Similarity=0.344 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQT 647 (779)
Q Consensus 594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqe 647 (779)
...+..+.+|+.+|+...+....+.+.+...+ ..+..|+..+....++|..
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ---------------------------CHHHH---HHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766665555555443322 4455566665555555444
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.55 E-value=2.9 Score=36.50 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEE 756 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~ 756 (779)
.+....+.++.++..+..........+..+..+++.+..++..+...+......++...+.+.+.+..+..|.+++.-
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444445555555555555555555555555555555566666666555543
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.32 E-value=3.8 Score=35.74 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004019 717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL 754 (779)
Q Consensus 717 ~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~l 754 (779)
.++..+...+......++...+.+.+.+..+..|.+++
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444443
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.23 E-value=5.4 Score=34.72 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 685 HMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 685 ~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
+++...++.+....+.+...+..++.+++.+......++.++..+...+......+..+...+.+.+..++..+......
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666666666666665555555555555555555555555555555555544
Q ss_pred HHHHHH
Q 004019 765 RLTLME 770 (779)
Q Consensus 765 ~~~l~E 770 (779)
.-.++-
T Consensus 85 E~evas 90 (101)
T 3u59_A 85 EAEVAS 90 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 14
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.20 E-value=1.1 Score=40.47 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 004019 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDL 400 (779)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~ 400 (779)
..++.|..++..|..++..|+++-. +.-..|+.++..|+++++..+....+...+.+.++..+.........
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q--------~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~ 86 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ--------RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRED 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777777777777777776632 45568999999999999999988777788887777776544433333
Q ss_pred HHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 004019 401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (779)
Q Consensus 401 ~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L 432 (779)
.+-+.+...+.+.+....|..+.++..-|-+|
T Consensus 87 ~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 87 TEKAQRSLSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp --------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344344445666666677776666665554
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.14 E-value=5.6 Score=34.67 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 004019 689 SEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY 762 (779)
Q Consensus 689 ~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~ 762 (779)
..++.+..+.+.+...+..++..++.+.......+.++..+...+......+..+...+.+.+..++..++...
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444333333333333333344444444444433333
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.82 E-value=2.6 Score=52.12 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=8.3
Q ss_pred HHHhhhhhhHHHHHHHHHH
Q 004019 153 EEDRETGIPRTKNIVSNIL 171 (779)
Q Consensus 153 e~~L~~r~~~tk~~l~~l~ 171 (779)
+++...|-.-+|.+-++||
T Consensus 394 ~qa~~~rdalak~lY~~LF 412 (1080)
T 2dfs_A 394 LHAINARDALAKHIYANLF 412 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.66 E-value=9.1 Score=34.34 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004019 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDM 645 (779)
Q Consensus 595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~l 645 (779)
.++++|.+||.+++.. ..+-..|..||+.+..+.++|
T Consensus 17 ~ye~~I~~LR~qid~~--------------~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQL--------------TNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888887 445666666666666655554
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.78 E-value=11 Score=34.14 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET 637 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~ 637 (779)
.++..+.++..|+..+........++........++-+.|...+..
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777666555555555555445555444444433
No 19
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=89.45 E-value=11 Score=33.68 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~ 491 (779)
+..|++|+.|+--+..+.++...+++.. +..+.|-+-.+..+++++..-+.++.+ ||++++.+.
T Consensus 10 ~~~ia~L~~D~~s~~~eleEnqeEL~iV------gkML~EEqgKVDQlqKRn~~HQKEi~~----------Lrae~~~~Q 73 (167)
T 4gkw_A 10 EDEVADLKQDTESLQKQLEENQEELEIV------GNMLREEQGKVDQLQKRNVAHQKEIGK----------LRAELGTAQ 73 (167)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHhccHHHHHHHH----------HHHHHHHHH
Confidence 5678899999988888888888888663 456666677777777777776666655 677777776
Q ss_pred HHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhH
Q 004019 492 NVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSN 529 (779)
Q Consensus 492 ~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~ 529 (779)
.-|......++.-+.+-.-+.-.|++|+.-...+++++
T Consensus 74 Rn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKD 111 (167)
T 4gkw_A 74 RNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKD 111 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHH
T ss_pred HhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhh
Confidence 66655433333332233344556677766666666543
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.04 E-value=5.5 Score=35.23 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=60.8
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~ 491 (779)
+.+..+|.....|+..++|.+..++........ ..+++|+.++..|....+.++...-++.--+- ++.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~---------~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ND---DLE 69 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---------KQVSVLEDDLSQTRAIKEQLHKYVRELEQAND---DLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch---HHH
Confidence 567788999999999999999999977655544 77888888888888887776655333333222 333
Q ss_pred HHHHhhHhhhHHHhhhhhhHHHHHHHHHH
Q 004019 492 NVLERKVKECETLLASSADQVAEIHKLQA 520 (779)
Q Consensus 492 ~~~~~~~~e~~~l~~~~~~~~~eik~Lr~ 520 (779)
.+--.....+.+++.+|...-+.+.-|..
T Consensus 70 R~~R~t~~SLeD~E~k~n~aiErnalLE~ 98 (111)
T 2v66_B 70 RAKRATIVSLEDFEQRLNQAIERNAFLES 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22222222345555555544343333333
No 21
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=88.59 E-value=16 Score=34.27 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 004019 717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTL 768 (779)
Q Consensus 717 ~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l 768 (779)
..+..+++++-.+.-.++..+.+...+...+...-..+..+...+..+...+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3333334444444444444444433333333333333333333333333333
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.06 E-value=21 Score=33.85 Aligned_cols=45 Identities=7% Similarity=0.182 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 686 MMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNS 730 (779)
Q Consensus 686 ~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~ 730 (779)
.++.++..+..+++............-+.|...+..++++.....
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455566666666666777777777777777777777777665544
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.71 E-value=8.8 Score=34.45 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=59.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 004019 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (779)
Q Consensus 353 S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L 432 (779)
|..|..+..++..|+..++.+...-..|+.+.++++..+.+|..+-|. +.. .-..+|.++..+|...|+.
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~-E~~---------~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE-EML---------QREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHH---------HHHHHHHHHHHhhhcccHH
Confidence 345667777888888888877777777888888887777777655542 222 2255678888888887765
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHH
Q 004019 433 EMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQR 468 (779)
Q Consensus 433 ~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~ 468 (779)
..- ..++..-+.+|.++|..|+.
T Consensus 82 ~l~-------------r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 82 SLA-------------RLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 332 12344455556666655543
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.19 E-value=4.4 Score=46.45 Aligned_cols=49 Identities=10% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019 708 IENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEE 756 (779)
Q Consensus 708 ~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~ 756 (779)
+.........+...++++...+...++..+..+.++.+++..++.++.+
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444444443333
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.78 E-value=10 Score=43.25 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 004019 704 KAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRL 766 (779)
Q Consensus 704 ~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~ 766 (779)
....++........+.....+++..+....+.+++.+.+..+.+.+++.+.....++++++..
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444444433
No 26
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=84.62 E-value=10 Score=35.41 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRL 740 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~ 740 (779)
++..|....+.+..++..+......++..-..+..+++.++.+..++-.++---...++.-+.+..+|
T Consensus 71 adrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 71 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 66667777777777777777777777777777777777777777777776655555555555554444
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.25 E-value=17 Score=30.17 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 691 IQQANASLNFFDMKAARIENQLRFCLDQA 719 (779)
Q Consensus 691 l~~~~~~ie~~~~~i~~~ee~lk~l~~~~ 719 (779)
++.+..+.+.....+..++.+++......
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~ 36 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERS 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333333
No 28
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.04 E-value=22 Score=30.60 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYL 632 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~ 632 (779)
.|..+..+=+.|...|....+....+-..|...+.+...|-
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 44444444445555555544433333333333333333333
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.58 E-value=19 Score=30.33 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDD 644 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~ 644 (779)
..+-..+..||+.+..+.++
T Consensus 13 ~~e~~~l~~e~dn~~~~~ed 32 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMR 32 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 45555566666655444444
No 30
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=82.15 E-value=27 Score=32.52 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV 761 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l 761 (779)
..+..++.++..+....+....+......++..+...+...++..-.....+..+...+.-+...++.|...-+.+.++-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE 131 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKN 131 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence 34445555555555555555555555555555555555555555545555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 004019 762 YKSRLTLM 769 (779)
Q Consensus 762 ~e~~~~l~ 769 (779)
..+..++.
T Consensus 132 ~~yee~I~ 139 (147)
T 2b9c_A 132 YHLENEVA 139 (147)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 44444443
No 31
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=82.08 E-value=39 Score=37.30 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 585 AEAISQQRLAAAEAEIADMRQKLEAF 610 (779)
Q Consensus 585 ~~a~~~~kl~~~e~ei~~L~~~l~~~ 610 (779)
.++++|.+|+..+.|+++.++...++
T Consensus 3 ~~a~yq~~la~yq~elarvqkana~a 28 (497)
T 3iox_A 3 NEADYQAKLTAYQTELARVQKANADA 28 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999888776
No 32
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.53 E-value=19 Score=31.52 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 580 KTAIEAEAISQQRLAAAEAEIADMRQ 605 (779)
Q Consensus 580 k~a~e~~a~~~~kl~~~e~ei~~L~~ 605 (779)
..|.++.+.-+..|.....+|+.++.
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444434444444444444444444
No 33
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.46 E-value=25 Score=30.21 Aligned_cols=82 Identities=6% Similarity=0.142 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019 684 KHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSA-------NLENTQKRLSDVRKSSVQVRGSLEE 756 (779)
Q Consensus 684 k~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~-------~le~~r~~~~e~e~~l~elr~~le~ 756 (779)
+..+..++..+...-..+...+..++..-..+..++..++.+...+.. .+-.+++.+.++...+..+..++..
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555444 4555566666666666666666666
Q ss_pred HHHHHHHHH
Q 004019 757 SQSKVYKSR 765 (779)
Q Consensus 757 ~e~~l~e~~ 765 (779)
+..++..++
T Consensus 86 ~~~qLdkL~ 94 (96)
T 3q8t_A 86 AQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 666665544
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.02 E-value=36 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775 (779)
Q Consensus 733 le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l 775 (779)
+-..++....++.....|+.++...+..+..++..+.+++.-+
T Consensus 103 Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 103 VADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666677777777777777777777766543
No 35
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.48 E-value=55 Score=34.92 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRS 727 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~ 727 (779)
...+--..|+.++..++..|+.+...|+.+...++.+..++.+|+..+.
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677778888888888888888888888888888887777763
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.79 E-value=15 Score=30.41 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~ 728 (779)
.+..+++....++..++..+.........++..+..|...+..++.++-.
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333333333333333333333333333
No 37
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.04 E-value=34 Score=30.22 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 004019 715 CLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLM 769 (779)
Q Consensus 715 l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~ 769 (779)
.......+.+++..+....+.+...+.++|....+|-+..=.+-.-+.++..+++
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 3445666777777777777777777777777777777766655555666655554
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.05 E-value=36 Score=37.75 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 686 MMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDR 726 (779)
Q Consensus 686 ~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel 726 (779)
.|+..++.++..|+.+.+.|+.|...++.+..++.+|+-.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555555443
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=76.48 E-value=53 Score=31.11 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLA 723 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~le 723 (779)
.+...+..+..++..+.............+-+.+..+......++
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333333333333333333333333333333333333
No 40
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.07 E-value=53 Score=29.58 Aligned_cols=43 Identities=14% Similarity=0.324 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004019 732 NLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778 (779)
Q Consensus 732 ~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~le~e 778 (779)
.+..+...+..++.++..++..+. .++.+.+ .+..+++.|+.|
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~---~ql~EYq-~LlnvKl~Ld~E 118 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMA---RLLREYQ-ELMNTKLALDVE 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHH-HHHHHHHHHHHH
Confidence 445556666667776666665543 3444444 344555555543
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.43 E-value=47 Score=30.06 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004019 732 NLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778 (779)
Q Consensus 732 ~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~le~e 778 (779)
.+..++..+..++.++..++..+. .++.+.+ .+..+++.|+.|
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~---~ql~EYq-~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEME---QQNQEYK-ILLDVKTRLEQE 120 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHH
Confidence 445566666667777666665543 3344443 344555555543
No 42
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=70.54 E-value=41 Score=27.42 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 637 TIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQL 712 (779)
Q Consensus 637 ~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~l 712 (779)
.+|..++.+-.+|.+|+.-.+.++=....|.. ....|..++..+..++..+......+..++..+++.+
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~-------rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIA-------KVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777776555544444444433 2334444444444444444444444444444444443
No 43
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=69.85 E-value=49 Score=27.85 Aligned_cols=73 Identities=10% Similarity=0.071 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV 761 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l 761 (779)
.++..++.++..+...+.........++.....+......+... +.+++.....|..+....+.++
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--------------l~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--------------MKQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444555555544444444444443 4445555555555555555555
Q ss_pred HHHHHHH
Q 004019 762 YKSRLTL 768 (779)
Q Consensus 762 ~e~~~~l 768 (779)
+++...+
T Consensus 80 ~el~~rl 86 (89)
T 3bas_A 80 ARLKKLV 86 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554443
No 44
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.84 E-value=16 Score=33.30 Aligned_cols=42 Identities=19% Similarity=0.037 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 004019 582 AIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKS 623 (779)
Q Consensus 582 a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~ 623 (779)
||.+-+.+.+.-..++..+..|+.++.+...-+..+..+|..
T Consensus 87 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~ 128 (135)
T 2e7s_A 87 ANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKN 128 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555666665555555555554443
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.81 E-value=89 Score=34.47 Aligned_cols=38 Identities=5% Similarity=0.031 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 004019 730 SANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLT 767 (779)
Q Consensus 730 ~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~ 767 (779)
......++.+-..+++.+.++...++.+.+.+.++-..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 33333333333344444444444444444444444333
No 46
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=65.58 E-value=37 Score=28.23 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (779)
Q Consensus 312 ~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq 381 (779)
.+.+|..|-.=|.+.-.+|..|-..+..|+.+ +..++.+++.++.+++..|
T Consensus 30 Wk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eE-------------------i~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 30 WKEVAEKRRKALYEALKENEKLHKEIEQKDNE-------------------IARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999998887765544 4566777777877766554
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.55 E-value=66 Score=29.05 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 672 RARQLQDALLMDKHMMESEIQQANA 696 (779)
Q Consensus 672 k~~q~~~~l~~ek~~le~el~~~~~ 696 (779)
...+.|..|+.-|-.|+.+|.+...
T Consensus 102 ~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 102 QQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777776543
No 48
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=62.48 E-value=72 Score=27.10 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 578 RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657 (779)
Q Consensus 578 ~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~ 657 (779)
.++.+|...|.+.-|.+..|.+...|..++...+.. ....-..+|.++|..+....+++...+.++.-++.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~---------~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ---------GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888889999999999999998887655321 12234566778888888777777777777775554
Q ss_pred Hhh
Q 004019 658 ERD 660 (779)
Q Consensus 658 e~d 660 (779)
.+.
T Consensus 81 nl~ 83 (93)
T 3s4r_A 81 NLA 83 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 49
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.80 E-value=51 Score=27.66 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCL-SSSKAFLSVKNQLEKSKSEVFKYQALFEKL 380 (779)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i-~~S~~yk~L~~q~~~l~~~~~~~r~~~e~L 380 (779)
..+|+.|...+..|-.++..|...+.|+++- .....+..+..++..++..++.+-..-+.|
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999754 333456667777777777777665555444
No 50
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.57 E-value=91 Score=27.99 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 672 RARQLQDALLMDKHMMESEIQQANA 696 (779)
Q Consensus 672 k~~q~~~~l~~ek~~le~el~~~~~ 696 (779)
...+.|..|+.-|-.|+.+|.+...
T Consensus 100 ~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 100 RLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777776543
No 51
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.77 E-value=22 Score=28.79 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019 712 LRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ 758 (779)
Q Consensus 712 lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e 758 (779)
+..|+.-+....++++.....+..+...+.+.+..+..|+..+++++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555556666666777777777777777888888888887777654
No 52
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.65 E-value=60 Score=26.78 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004019 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (779)
Q Consensus 239 ~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e 271 (779)
..++++++......++..++...+.++..++.+
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334555555555555556666666666556544
No 53
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.09 E-value=75 Score=26.21 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 667 VLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN 732 (779)
Q Consensus 667 ~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~ 732 (779)
++++-...+.+..+..+-..|+.++..++..++.....-.++...++.+...+..--.+++.+.+.
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333444444555555555555555555555555555555555555555555544444444433
No 54
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=57.31 E-value=1.1e+02 Score=27.51 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 703 MKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (779)
Q Consensus 703 ~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~ 739 (779)
..+...++....+......++..+..+...++.....
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555444444443333
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=57.28 E-value=82 Score=26.10 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004019 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDD 661 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd 661 (779)
|+..+-..|.-|++.++.. +.....|..|.+.+...-+.+..+|.++.+......+
T Consensus 14 KIq~avdtI~lLqmEieEL--------------KekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEEL--------------KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 5555556677777777766 4455555556655555555555666666554444333
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.27 E-value=14 Score=31.94 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q 004019 320 LLELKGLHDGRIKVLQQLYNLQNTLKS 346 (779)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~~ 346 (779)
..+++.|..++..|.+++..|.++|..
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888653
No 57
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.61 E-value=55 Score=29.83 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019 737 QKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE 774 (779)
Q Consensus 737 r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~ 774 (779)
++....++.....|+.++...+..+..++..+.+++.-
T Consensus 95 r~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 95 RMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555555555555555555554443
No 58
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=56.48 E-value=93 Score=26.89 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 717 DQAQRLAEDRSQNSANLENTQKRLSDVRK 745 (779)
Q Consensus 717 ~~~~~leeel~~~~~~le~~r~~~~e~e~ 745 (779)
+++..+++++..+++++-..+.++.+.+.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555444443
No 59
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.21 E-value=88 Score=26.13 Aligned_cols=75 Identities=8% Similarity=0.097 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGS 753 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~ 753 (779)
.|+.++..+..+-..+..+++.....+..+..++..=...+..++.++..+...+...--.-.+++..+..|+..
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555556666665555555555544445555555555443
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.49 E-value=2.5e+02 Score=30.90 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=10.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHH
Q 004019 746 SSVQVRGSLEESQSKVYKSRLTLM 769 (779)
Q Consensus 746 ~l~elr~~le~~e~~l~e~~~~l~ 769 (779)
.+..|+..++.+..++..+...+.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 61
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=54.39 E-value=1e+02 Score=26.20 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=11.2
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKSRLTLMELQ 772 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~~~~l~E~~ 772 (779)
+...+..+......++..+..+...+.+++
T Consensus 61 Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 61 LRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444333333
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.26 E-value=1.3e+02 Score=33.41 Aligned_cols=47 Identities=2% Similarity=-0.019 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAED 725 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leee 725 (779)
.|++.+..|+.+|...-..|..+...|+.+--+++.|...+......
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444433444444444444444444444444444333
No 63
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=51.44 E-value=1.6e+02 Score=27.55 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLA 723 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~le 723 (779)
+...+..|..++..+...+..+...-+...+....++++++.|..++-..+
T Consensus 40 aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 40 SEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555555555544444433
No 64
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=51.39 E-value=1.2e+02 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 582 AIEAEAISQQRLAAAEAEIADMRQKLEA 609 (779)
Q Consensus 582 a~e~~a~~~~kl~~~e~ei~~L~~~l~~ 609 (779)
+......|...|.....+|++|+..+..
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 65
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.78 E-value=1.6e+02 Score=27.45 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 004019 594 AAAEAEIADMRQKLE 608 (779)
Q Consensus 594 ~~~e~ei~~L~~~l~ 608 (779)
..++.++..+|..|.
T Consensus 16 s~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 344444444444444
No 66
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=50.43 E-value=70 Score=26.55 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFE 378 (779)
Q Consensus 312 ~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e 378 (779)
.+.+|+.|-.-|.+.-.+|..|-+.+..++.+ +..++.+|.+++.+++
T Consensus 22 Wk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eE-------------------i~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 22 WKEVAEQRRKALYEALKENEKLHKEIEQKDSE-------------------IARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Confidence 46788999999999999999888887766544 4455666666666643
No 67
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.06 E-value=47 Score=25.06 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 004019 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESA 254 (779)
Q Consensus 208 E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~ 254 (779)
....|+..+..|-+++..|..-++.. +.++..|.++++.+
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~A-------R~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEA-------RQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 34567888888888888887777776 55555555555543
No 68
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=49.15 E-value=1.6e+02 Score=26.98 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 004019 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSE-----VFKYQALFEKLQ 381 (779)
Q Consensus 307 ~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~-----~~~~r~~~e~Lq 381 (779)
......++.......|-..|+.++..+.+++..|-..|.+.. ..|+.|+.+-.++..++.. +-+-+..|+-|.
T Consensus 45 eqR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~--~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~ 122 (140)
T 1xaw_A 45 QQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYR--EESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLK 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--TTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 456677888888888888999999999999999998888653 5678898877777776542 234444555555
Q ss_pred HHHHHHHHHHHHh
Q 004019 382 VEKDNLAWRETEL 394 (779)
Q Consensus 382 ~er~~~~~~~~E~ 394 (779)
....-+.+.+.++
T Consensus 123 ~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 123 SKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5554444444444
No 69
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=47.97 E-value=1.2e+02 Score=25.08 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 688 ESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQN 729 (779)
Q Consensus 688 e~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~ 729 (779)
...++.+...-..+...|..++..+.....+...+..++..+
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444443333
No 70
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=46.71 E-value=68 Score=31.10 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQV 382 (779)
Q Consensus 312 ~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~ 382 (779)
++.+|+.|-.=|.+.-.||..|-.++..++. ++..|+.+|+.++.+++.+|.
T Consensus 99 Wk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~e-------------------Ei~~LkeEn~eLkeLae~~q~ 150 (209)
T 2wvr_A 99 WKEVAEKRRKALYEALKENEKLHKEIEQKDN-------------------EIARLKKENKELAEVAEHVQY 150 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999998888776544 455667777777777655544
No 71
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=45.29 E-value=1.2e+02 Score=24.95 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004019 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 344 (779)
Q Consensus 312 ~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l 344 (779)
.+.+|..|-.=|.+.-.+|..|-.++..++..+
T Consensus 18 Wk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 18 WKEVAEQRRKALYEALKENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888889999999999988888877764
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.20 E-value=3.1e+02 Score=29.22 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 603 MRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQ 648 (779)
Q Consensus 603 L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeq 648 (779)
|+..|+...+ ..+...+.|..+++.+.+.+.+....
T Consensus 54 Lqg~Ldk~er----------~~~~rIe~L~~~L~~~s~s~~~~~~y 89 (390)
T 1deq_A 54 MKGLIDEVDQ----------DFTSRINKLRDSLFNYQKNSKDSNTL 89 (390)
T ss_pred HHHHHHHhhh----------hHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 6666666532 23445556666666665555554443
No 73
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.82 E-value=82 Score=23.85 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 241 KAKLNRLKGELESAVKELEECNCKLAA 267 (779)
Q Consensus 241 ~~e~~~L~~~Le~~~~el~~~~kkl~~ 267 (779)
.+++..|...+..+..|-..+..|||.
T Consensus 24 ssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 24 SNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 555666666777788888888888763
No 74
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.10 E-value=65 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.411 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004019 603 MRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (779)
Q Consensus 603 L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~ 639 (779)
|+.++...-..-..|-+.|.....+...|..+||.++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333334444455555667777777777664
No 75
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.87 E-value=1.6e+02 Score=25.22 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 678 DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN 732 (779)
Q Consensus 678 ~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~ 732 (779)
..++.++..++.++......+..+...+..-...-......+..++.|+-.++..
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444333
No 76
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.48 E-value=1.4e+02 Score=24.26 Aligned_cols=67 Identities=6% Similarity=-0.033 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004019 682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV 748 (779)
Q Consensus 682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~ 748 (779)
++++.+-.+-..+-..-+++.-.-..+-.++..|..+...+..|+..+.+....+..++.+++.+++
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444445555555555666666677777777777777777777777777777776654
No 77
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.36 E-value=2.4e+02 Score=26.17 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 676 LQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728 (779)
Q Consensus 676 ~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~ 728 (779)
.+..|..+...+..++..+...+..-...+..+-+.+..+..++..+++.+..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444333
No 78
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.25 E-value=3.6e+02 Score=29.43 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 683 DKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728 (779)
Q Consensus 683 ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~ 728 (779)
--..|+.++..++..|+.+.+.|+-+...++.+...+.+|+..+..
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666666666666665443
No 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.77 E-value=2.2e+02 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004019 676 LQDALLMDKHMMESEIQQA 694 (779)
Q Consensus 676 ~~~~l~~ek~~le~el~~~ 694 (779)
.+..|..+++.+..++..+
T Consensus 16 ~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 16 LIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 80
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=37.42 E-value=2.5e+02 Score=25.84 Aligned_cols=82 Identities=7% Similarity=0.043 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CccccccChhHHHHHHHHHHHHHHHHHH
Q 004019 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK-------SVKCLSSSKAFLSVKNQLEKSKSEVFKY 373 (779)
Q Consensus 301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~-------~~~~i~~S~~yk~L~~q~~~l~~~~~~~ 373 (779)
....+....+.+...+..|...|+... ........+..+..=+. +.+| .....-..+..++..+.+++...
T Consensus 30 r~~~l~~rw~~L~~~a~~R~~~Le~s~-~lq~F~~d~~el~~Wi~ek~~~a~~~~~-~d~~~v~~ll~kH~afe~El~a~ 107 (161)
T 3lbx_A 30 RRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTK 107 (161)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCCc-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999887 66677777766653322 2333 33334444555555555555555
Q ss_pred HHHHHHHHHHH
Q 004019 374 QALFEKLQVEK 384 (779)
Q Consensus 374 r~~~e~Lq~er 384 (779)
...+..+...-
T Consensus 108 ~~~~~~l~~~g 118 (161)
T 3lbx_A 108 SRLMSELEKTR 118 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444333
No 81
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=37.23 E-value=4.6e+02 Score=28.93 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 004019 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635 (779)
Q Consensus 594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Ei 635 (779)
..++.+.+..+..|..+.+......+.+.....=.+.+.+++
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~ 358 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSEL 358 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444455555555555555555554443344444444444
No 82
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=37.08 E-value=2.3e+02 Score=25.38 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004019 559 AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETI 638 (779)
Q Consensus 559 ~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l 638 (779)
+.+.++.+.+.+++...++.|. -+.|+.-..-++.|++..... ..+...|++|++.+
T Consensus 16 L~~D~~s~~~eleEnqeEL~iV---------gkML~EEqgKVDQlqKRn~~H--------------QKEi~~Lrae~~~~ 72 (167)
T 4gkw_A 16 LKQDTESLQKQLEENQEELEIV---------GNMLREEQGKVDQLQKRNVAH--------------QKEIGKLRAELGTA 72 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHhccHH--------------HHHHHHHHHHHHHH
Confidence 5666778888887766654332 123444455556666665555 44666677777666
Q ss_pred HHHHH
Q 004019 639 GQSYD 643 (779)
Q Consensus 639 ~~A~e 643 (779)
.--|+
T Consensus 73 QRn~~ 77 (167)
T 4gkw_A 73 QRNLE 77 (167)
T ss_dssp HHHHH
T ss_pred HHhHH
Confidence 44333
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.74 E-value=4.4e+02 Score=28.52 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 004019 694 ANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSR 765 (779)
Q Consensus 694 ~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~ 765 (779)
++++++........++.+...|...+-.+.+-|..--.+ ..+++.|+|.++..+..+++..+.++++.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ---GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555566666666666666666666666555554332211 225778888888888888777777776653
No 84
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=35.71 E-value=2.2e+02 Score=24.75 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=29.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 653 LQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQAN 695 (779)
Q Consensus 653 ~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~ 695 (779)
+..+++.-+....|-. ..+....+.+.|..|+.++..++
T Consensus 4 i~LLRK~aE~~KqL~~----~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 4 ADLLRKNAEVTKQVSM----ARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777 78888888888888888888766
No 85
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.38 E-value=2.7e+02 Score=25.74 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 599 EIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQT 647 (779)
Q Consensus 599 ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqe 647 (779)
.|..|+..+...+..+.++.+.+..+....+.+..|+.++.-.+..+..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666676777777777666555554433
No 86
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=35.18 E-value=2.1e+02 Score=24.36 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004019 722 LAEDRSQNSANLENTQKRLSD 742 (779)
Q Consensus 722 leeel~~~~~~le~~r~~~~e 742 (779)
+++++..+++++-..+.++.+
T Consensus 10 Lq~e~~~~E~QL~~A~QKLkd 30 (96)
T 2ic9_A 10 VQDNITLHEQRLVTTRQKLKD 30 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444433333333
No 87
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=34.64 E-value=2.3e+02 Score=24.73 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 721 RLAEDRSQNSANLENTQKRLSDVR 744 (779)
Q Consensus 721 ~leeel~~~~~~le~~r~~~~e~e 744 (779)
.++++++.+++++-..+.++.+.+
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~ 49 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAE 49 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 88
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=33.13 E-value=2e+02 Score=23.55 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 719 AQRLAEDRSQNSANLENTQKRLSDVRK 745 (779)
Q Consensus 719 ~~~leeel~~~~~~le~~r~~~~e~e~ 745 (779)
+..+++++..+++++-..+.++.+.+.
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAER 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444433
No 89
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.01 E-value=57 Score=20.33 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004019 245 NRLKGELESAVKELEECNCKL 265 (779)
Q Consensus 245 ~~L~~~Le~~~~el~~~~kkl 265 (779)
.+|-.+|++++.++-+.++||
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356778899999999998887
No 90
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.87 E-value=2.1e+02 Score=23.61 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 004019 722 LAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK 763 (779)
Q Consensus 722 leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e 763 (779)
+.++++......-.+..++.+.+....+|...++..+.++.+
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555554444444444444
No 91
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.28 E-value=2.3e+02 Score=24.02 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 004019 593 LAAAEAEIADMRQKL 607 (779)
Q Consensus 593 l~~~e~ei~~L~~~l 607 (779)
|...+..|+.|+..+
T Consensus 18 L~~kq~~id~lke~~ 32 (94)
T 3jsv_C 18 LVAKQELIDKLKEEA 32 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 333444444444443
No 92
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.69 E-value=1.2e+02 Score=23.60 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 357 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR 390 (779)
Q Consensus 357 k~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~ 390 (779)
..|..++..|+..|..+...+..|+.|...++.-
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666666665444433
No 93
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.99 E-value=2.6e+02 Score=23.90 Aligned_cols=37 Identities=8% Similarity=0.171 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 004019 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLM 769 (779)
Q Consensus 733 le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~ 769 (779)
+..+...+.++...+..++..+..++..+..+...+.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555444444444443
No 94
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.67 E-value=2.4e+02 Score=23.32 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 004019 713 RFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLE 755 (779)
Q Consensus 713 k~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le 755 (779)
..++-.+..+..+...+....+..+.....+..++..|+....
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333334444444443333
No 95
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.65 E-value=3e+02 Score=24.20 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019 692 QQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 692 ~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~ 771 (779)
..++.++......+...+.+...+...+..+...|..-...- ..++.+++.+|..|+..|......+..++.....+
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q ss_pred HHHH
Q 004019 772 QIEL 775 (779)
Q Consensus 772 ~~~l 775 (779)
...+
T Consensus 105 ~~r~ 108 (121)
T 3mq7_A 105 SVRI 108 (121)
T ss_dssp HHHH
T ss_pred hhHh
No 96
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.16 E-value=88 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHH
Q 004019 205 LQSEVKNLRLALMDLHLKHKSL 226 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l 226 (779)
|..|+..|+..+..|...|..+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444444
No 97
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.04 E-value=2.9e+02 Score=23.71 Aligned_cols=26 Identities=4% Similarity=-0.010 Sum_probs=10.8
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKSRLTL 768 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~~~~l 768 (779)
++..+..+..+++.++..+.+++..+
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 98
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.14 E-value=2e+02 Score=27.57 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH-HHHhh
Q 004019 41 AVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITD-LESCS 100 (779)
Q Consensus 41 ~vl~fQn~aL~rql~~~kre~~~Le~ri~~Le~rq~~~d~~L~~v~~~W~QL~~~-i~~l~ 100 (779)
.-|+.+|..|.++++.+..++..|..++..++.....+++.+..-..- -+++.| +..|.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~-i~i~~DL~e~LT 82 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAEN-SEVIKDLYEYLC 82 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh-hhHHHHHHHHcc
Confidence 348899999999999999999999999999999998888777533332 334444 34443
No 99
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=26.54 E-value=6.8e+02 Score=27.61 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 602 DMRQKLEAFKRDMVSLSD--ALKSKNEEIEAYLSEIETIGQSYDDMQT 647 (779)
Q Consensus 602 ~L~~~l~~~~r~~~~l~~--~l~~~~~e~eaL~~Eie~l~~A~e~lqe 647 (779)
++.++.+..+|..++|-. -+...+.+++...+||+.-...++..++
T Consensus 295 elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~e 342 (551)
T 2b5u_A 295 QVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQE 342 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544 4455566777778888765555555444
No 100
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.02 E-value=2.1e+02 Score=24.58 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=38.5
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHh--cCCCc----------hhHHHHHHHHHhccHHHHHHHHHHHHHhHHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEEAS--REPGR----------KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~--~~~~~----------~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~ 476 (779)
..+|..|+..-.++|...+.|.++++... .+... -|....++. ....|..|+.|+.++|..
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~----~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR----LREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888887722 12211 234333333 347777777777776654
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.47 E-value=1.2e+02 Score=22.99 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQI 656 (779)
Q Consensus 625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~ 656 (779)
..+.++|..|++.+..-++.+..++..+...+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777766665544
No 102
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.24 E-value=3.1e+02 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 677 QDALLMDKHMMESEIQQANASLNFFD 702 (779)
Q Consensus 677 ~~~l~~ek~~le~el~~~~~~ie~~~ 702 (779)
+..+..+...+..++..+..++....
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 103
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=25.05 E-value=2.9e+02 Score=22.75 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 651 QLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASL 698 (779)
Q Consensus 651 rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~i 698 (779)
.|+|.++.+--....+..||......+.+...++..+..++..-...+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Confidence 455555555555555555666666666666655555555555433333
No 104
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.93 E-value=81 Score=19.81 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 41 AVLQFQNQKLVQKLETQKVEYSAL 64 (779)
Q Consensus 41 ~vl~fQn~aL~rql~~~kre~~~L 64 (779)
+.|.|-|++|-+.+-..|..++.|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 468899999887766555555443
No 105
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.52 E-value=1.6e+02 Score=33.61 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004019 562 HVHSLK 567 (779)
Q Consensus 562 e~~~Lk 567 (779)
++...|
T Consensus 301 e~qqm~ 306 (575)
T 2i1j_A 301 DVQQMK 306 (575)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 106
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=24.08 E-value=57 Score=21.08 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHH
Q 004019 61 YSALENKFAQLKERQQPYDSTLKVVN 86 (779)
Q Consensus 61 ~~~Le~ri~~Le~rq~~~d~~L~~v~ 86 (779)
++.||.+|..|+.+.+.++..+..+.
T Consensus 2 iaaleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999988876653
No 107
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=23.28 E-value=2.1e+02 Score=23.07 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQ 648 (779)
Q Consensus 597 e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeq 648 (779)
-.||.++-.+++....-...+-..++..++++-.|-.++-.+..-.+++++.
T Consensus 20 ~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~qey 71 (72)
T 2xu6_A 20 MSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEEY 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3578888888888888888888899999999999999988888877777664
No 108
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.02 E-value=1.8e+02 Score=20.40 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 004019 249 GELESAVKELEECNCKLAALRAERDVT 275 (779)
Q Consensus 249 ~~Le~~~~el~~~~kkl~~lk~e~~~~ 275 (779)
++|..+..++...+++|+.+++.-++.
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666777777888888887655544
No 109
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.88 E-value=3.5e+02 Score=22.94 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 004019 711 QLRFCLDQAQRLAEDR 726 (779)
Q Consensus 711 ~lk~l~~~~~~leeel 726 (779)
.+..|..++.-...+.
T Consensus 41 ~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 41 TVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 110
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.65 E-value=3.6e+02 Score=23.02 Aligned_cols=19 Identities=11% Similarity=0.501 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004019 640 QSYDDMQTQNQQLLQQITE 658 (779)
Q Consensus 640 ~A~e~lqeqn~rl~qq~~e 658 (779)
+.|+.+.++-.++..+...
T Consensus 5 ~~~e~lre~l~~le~~~~~ 23 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSD 23 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444333333
No 111
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.34 E-value=4.4e+02 Score=26.22 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNS 730 (779)
Q Consensus 673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~ 730 (779)
..-....|...+..+..++..+..+-.-...+|.++.-++..|...+..+.+.+..++
T Consensus 147 ~SYSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE 204 (242)
T 3uux_B 147 SSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIE 204 (242)
T ss_dssp GSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333335555555555555555555555555555555555555555555544444433
No 112
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.17 E-value=3.4e+02 Score=22.46 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 592 RLAAAEAEIADMRQKLEAFK---RDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQT 647 (779)
Q Consensus 592 kl~~~e~ei~~L~~~l~~~~---r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqe 647 (779)
+|..++++|+.|...|.+-. .+. ..+.....+...+..+++.+-.-|+.|.+
T Consensus 30 ~Ie~LE~~i~~le~~ladp~~y~~d~----~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQVADASFFSQPH----EQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777776665421 111 23444555666777777777777776644
No 113
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.06 E-value=3.1e+02 Score=21.96 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 584 EAEAISQQRLA-AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQL 652 (779)
Q Consensus 584 e~~a~~~~kl~-~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl 652 (779)
.....+|+..+ ..+..|.+|..++... +.....+..|++.+......|+..+..+
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~l--------------e~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTL--------------KELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 114
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.62 E-value=3.9e+02 Score=23.03 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019 692 QQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEE 756 (779)
Q Consensus 692 ~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~ 756 (779)
.++-.+-..+.-.|.-+-+.+..+......+..+.+.....++..++....+...+..++..+.+
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 115
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.54 E-value=3.5e+02 Score=22.38 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 715 CLDQAQRLAEDRSQNSANLENTQKRLSD 742 (779)
Q Consensus 715 l~~~~~~leeel~~~~~~le~~r~~~~e 742 (779)
+..++..+..++..+.+.+|.....+..
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~q 52 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQ 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444444444444444443333333
No 116
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.37 E-value=4.6e+02 Score=29.12 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=9.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 004019 747 SVQVRGSLEESQSKVYKSRLTLM 769 (779)
Q Consensus 747 l~elr~~le~~e~~l~e~~~~l~ 769 (779)
.+.++.++..++..+.+++..+.
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333
No 117
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.67 E-value=3.4e+02 Score=29.74 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=13.7
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019 743 VRKSSVQVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 743 ~e~~l~elr~~le~~e~~l~e~~~~l~E~ 771 (779)
+-.+.+.++.++..++..+.++...+.++
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555444443
No 118
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.63 E-value=3.7e+02 Score=29.77 Aligned_cols=65 Identities=8% Similarity=-0.064 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019 707 RIENQLRFCLDQAQRLAEDRSQNSANLENTQK---RLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL 771 (779)
Q Consensus 707 ~~ee~lk~l~~~~~~leeel~~~~~~le~~r~---~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~ 771 (779)
.+.+..+.+..++..+..+.+.++..+-..++ .+.++-.+.+.++.++..++..+.+++..+.++
T Consensus 37 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333222 122333444445555555555555555554443
No 119
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.40 E-value=1.2e+02 Score=34.51 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 004019 586 EAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635 (779)
Q Consensus 586 ~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Ei 635 (779)
..+...+|...+++....+..|..+......|.+.+...+++.+.|..+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~ 386 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQ 386 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888888888887777777777776666666555443
Done!