Query 004019
Match_columns 779
No_of_seqs 166 out of 237
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 11:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004019.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004019hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 52.6 60 0.0044 26.9 18.0 45 720-764 133-177 (185)
2 d1seta1 a.2.7.1 (A:1-110) Sery 48.8 62 0.0045 25.9 11.8 65 205-269 33-98 (110)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 43.7 33 0.0024 25.1 6.9 32 321-352 4-35 (66)
4 d1seta1 a.2.7.1 (A:1-110) Sery 37.8 68 0.0049 25.7 8.8 26 745-770 71-96 (110)
5 d1lrza1 a.2.7.4 (A:245-309) Me 35.9 54 0.004 24.1 6.9 54 323-376 5-59 (65)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 34.8 1E+02 0.0075 24.4 11.2 21 679-699 12-32 (107)
7 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 34.1 1.3E+02 0.0098 25.6 11.7 64 202-265 44-107 (196)
8 d1gqea_ e.38.1.1 (A:) Polypept 24.7 2.9E+02 0.021 26.8 12.6 48 329-376 23-70 (362)
9 d1wu9a1 a.245.1.1 (A:191-249) 22.8 83 0.0061 22.6 5.6 34 362-395 2-35 (59)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 21.1 1.3E+02 0.0095 21.6 6.8 58 412-471 3-63 (66)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=52.61 E-value=60 Score=26.88 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019 720 QRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764 (779)
Q Consensus 720 ~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~ 764 (779)
..+...+......+..+...+..+...+..+...++.....+..+
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (185)
T d2ap3a1 133 KTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKV 177 (185)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444444333333
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=48.75 E-value=62 Score=25.95 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQ-DIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (779)
Q Consensus 205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~-d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk 269 (779)
|-.+...++..++.|+++...++.++.... +.......+.+.|..++..+...+..+..++..+-
T Consensus 33 ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 33 LDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888889999888888886543 22334456777777777777777777777665554
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=43.68 E-value=33 Score=25.14 Aligned_cols=32 Identities=13% Similarity=-0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Q 004019 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSS 352 (779)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~ 352 (779)
.|+.+|..+...+..++..++.+|.|+.||..
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~k 35 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKLASPGFREK 35 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCChHHHHh
Confidence 57889999999999999999999999977764
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=37.81 E-value=68 Score=25.69 Aligned_cols=26 Identities=4% Similarity=0.005 Sum_probs=11.8
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004019 745 KSSVQVRGSLEESQSKVYKSRLTLME 770 (779)
Q Consensus 745 ~~l~elr~~le~~e~~l~e~~~~l~E 770 (779)
.....++.++..++..+..+...+.+
T Consensus 71 ~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 71 ARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 5
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=35.89 E-value=54 Score=24.10 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 004019 323 LKGLHDGRIKVLQQLYNLQNTLK-SVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (779)
Q Consensus 323 Le~l~~e~~~l~~e~~~Lk~~l~-~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~ 376 (779)
|..|+.+...|..++..+..+|. +|+.=..-..+..|.+|+......++++..+
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~l 59 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRL 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888876 4532222235555556655555555444443
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.83 E-value=1e+02 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004019 679 ALLMDKHMMESEIQQANASLN 699 (779)
Q Consensus 679 ~l~~ek~~le~el~~~~~~ie 699 (779)
.+..+...+..++.++..++.
T Consensus 12 ~lq~el~~~~~q~~~le~q~~ 32 (107)
T d1fxka_ 12 QLQQQAQAISVQKQTVEMQIN 32 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 7
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.09 E-value=1.3e+02 Score=25.58 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=48.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (779)
Q Consensus 202 ~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl 265 (779)
...+..++..+...+..+..+.+.....+..-..........+..|...+-++..+|.....+.
T Consensus 44 ~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~ 107 (196)
T d1fioa_ 44 ASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNY 107 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888777776655556666778888888888888888876655
No 8
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=24.73 E-value=2.9e+02 Score=26.77 Aligned_cols=48 Identities=6% Similarity=0.021 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 004019 329 GRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (779)
Q Consensus 329 e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~ 376 (779)
+...+..++..|...+.++++......|+.+..+++.|+..++.+...
T Consensus 23 Dld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l 70 (362)
T d1gqea_ 23 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQM 70 (362)
T ss_dssp THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888999999988889999999999998888776554
No 9
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.80 E-value=83 Score=22.60 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004019 362 QLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (779)
Q Consensus 362 q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~ 395 (779)
++..|..++..++.-++.|+.||+-|-.++++.+
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888999999999988886663
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.07 E-value=1.3e+02 Score=21.55 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=38.7
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHH---HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHH
Q 004019 412 DSKIADLGIEIQKQIDEKNRIEMRLEE---ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471 (779)
Q Consensus 412 ~~~~~~lE~~l~rir~erd~L~~e~e~---~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~ 471 (779)
+..+..|.+.+.++..+.+.+...+.. ...++ ..++.+-+.....+..++..++..+.
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP--~~Vv~~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAP--KEVVEAEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSC--TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777754 22333 36777777777777777776666554
Done!