Query 004020
Match_columns 779
No_of_seqs 783 out of 5287
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 11:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-46 7.8E-51 445.7 28.7 93 368-462 654-749 (768)
2 4eco_A Uncharacterized protein 100.0 3E-44 1E-48 417.9 22.8 417 24-454 26-603 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2.3E-43 7.8E-48 417.0 25.6 412 22-450 263-818 (876)
4 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-42 3.9E-47 368.6 21.8 293 24-433 2-307 (313)
5 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.8E-42 349.1 26.6 341 50-455 4-412 (455)
6 4aw0_A HPDK1, 3-phosphoinositi 100.0 2.6E-38 9E-43 328.4 15.4 177 590-774 32-210 (311)
7 4b9d_A Serine/threonine-protei 100.0 2.7E-38 9.1E-43 334.0 15.3 177 590-774 24-201 (350)
8 3omv_A RAF proto-oncogene seri 100.0 2.7E-37 9.3E-42 321.8 16.8 176 589-774 35-210 (307)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.1E-36 2.1E-40 347.6 28.1 373 65-456 32-563 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-36 1.1E-40 362.0 26.4 397 53-456 13-565 (844)
11 2id5_A Lingo-1, leucine rich r 100.0 2.5E-36 8.7E-41 340.1 23.7 334 55-456 12-361 (477)
12 4aoj_A High affinity nerve gro 100.0 1.9E-37 6.6E-42 327.6 13.5 180 590-774 41-236 (329)
13 4fih_A Serine/threonine-protei 100.0 4E-37 1.4E-41 324.5 15.5 173 589-774 73-246 (346)
14 3rgz_A Protein brassinosteroid 100.0 1.4E-36 4.7E-41 361.5 21.9 324 65-433 343-743 (768)
15 4asz_A BDNF/NT-3 growth factor 100.0 2.6E-37 8.8E-42 322.1 13.4 180 590-774 13-206 (299)
16 3fpq_A Serine/threonine-protei 100.0 2.2E-36 7.6E-41 312.6 18.4 169 593-773 29-205 (290)
17 3hyh_A Carbon catabolite-derep 100.0 1.3E-36 4.3E-41 311.6 16.3 176 590-777 13-190 (275)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-35 3.9E-40 341.1 25.4 376 53-455 3-514 (549)
19 4fie_A Serine/threonine-protei 100.0 2.1E-36 7.3E-41 326.9 17.0 173 589-774 150-323 (423)
20 3ubd_A Ribosomal protein S6 ki 100.0 3.1E-37 1E-41 320.6 9.4 175 590-774 24-202 (304)
21 4gt4_A Tyrosine-protein kinase 100.0 1.2E-36 4.3E-41 318.3 13.9 181 590-774 26-223 (308)
22 4g31_A Eukaryotic translation 100.0 4.5E-36 1.5E-40 313.3 16.5 180 589-774 4-206 (299)
23 4g3f_A NF-kappa-beta-inducing 100.0 4.3E-36 1.5E-40 315.7 15.1 170 590-774 58-232 (336)
24 3t6q_A CD180 antigen; protein- 100.0 2.1E-34 7.1E-39 334.7 30.1 244 56-303 14-320 (606)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-34 7.5E-39 331.0 27.5 351 56-455 43-514 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 9.5E-35 3.2E-39 325.3 22.3 310 65-437 54-414 (455)
27 4g8a_A TOLL-like receptor 4; l 100.0 4.3E-34 1.5E-38 333.9 28.2 363 52-455 25-584 (635)
28 2id5_A Lingo-1, leucine rich r 100.0 1.9E-34 6.5E-39 324.8 23.2 317 68-455 14-337 (477)
29 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-34 6.6E-39 328.5 23.2 127 65-199 21-150 (520)
30 1ziw_A TOLL-like receptor 3; i 100.0 6.8E-34 2.3E-38 334.9 27.8 372 54-436 4-448 (680)
31 4ecn_A Leucine-rich repeat pro 100.0 3.9E-34 1.3E-38 338.3 24.8 356 54-453 435-842 (876)
32 3hmm_A TGF-beta receptor type- 100.0 7E-35 2.4E-39 305.9 16.3 175 589-773 2-187 (303)
33 2z63_A TOLL-like receptor 4, v 100.0 1E-33 3.5E-38 326.4 26.7 372 66-455 29-535 (570)
34 3oja_B Anopheles plasmodium-re 100.0 3.9E-34 1.3E-38 330.7 21.9 308 66-433 52-360 (597)
35 3o6n_A APL1; leucine-rich repe 100.0 1E-33 3.4E-38 310.2 23.6 308 65-432 45-353 (390)
36 4ase_A Vascular endothelial gr 100.0 1.4E-34 4.6E-39 308.3 14.8 190 581-774 55-263 (353)
37 3t6q_A CD180 antigen; protein- 100.0 1.9E-33 6.6E-38 326.5 25.0 300 66-454 255-563 (606)
38 4b99_A Mitogen-activated prote 100.0 3E-34 1E-38 311.0 16.7 180 589-777 53-241 (398)
39 4eco_A Uncharacterized protein 100.0 1.7E-33 5.8E-38 327.3 23.9 358 53-432 192-601 (636)
40 4fcg_A Uncharacterized protein 100.0 8.7E-34 3E-38 302.2 15.7 274 25-431 24-314 (328)
41 4f9c_A Cell division cycle 7-r 100.0 1.5E-33 5.3E-38 302.3 17.1 181 583-778 14-226 (361)
42 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-32 1.4E-36 319.6 29.7 356 66-455 223-626 (680)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-33 5.2E-38 298.5 15.4 233 131-456 71-309 (313)
44 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-32 1.2E-36 315.9 28.1 154 68-227 14-170 (606)
45 3v5w_A G-protein coupled recep 100.0 3E-33 1E-37 315.5 18.1 177 589-777 188-369 (689)
46 3oja_B Anopheles plasmodium-re 100.0 1E-32 3.5E-37 318.9 22.9 286 65-410 75-361 (597)
47 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-32 5.4E-37 312.7 21.5 356 68-453 3-483 (520)
48 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.8E-32 2E-36 310.8 25.9 336 67-450 33-485 (562)
49 3bz5_A Internalin-J, INLJ; leu 100.0 5.6E-31 1.9E-35 293.1 29.7 212 65-305 42-254 (457)
50 2z63_A TOLL-like receptor 4, v 100.0 2.4E-31 8.1E-36 306.6 27.2 375 68-451 10-507 (570)
51 2z80_A TOLL-like receptor 2, v 100.0 2E-32 7E-37 295.5 17.0 284 50-436 26-319 (353)
52 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-32 5.7E-37 314.7 17.3 344 64-436 49-515 (549)
53 2ft3_A Biglycan; proteoglycan, 100.0 3.2E-31 1.1E-35 283.5 22.8 284 68-429 36-331 (332)
54 1xku_A Decorin; proteoglycan, 100.0 6.9E-31 2.4E-35 280.7 24.9 105 90-200 53-158 (330)
55 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-31 2.5E-35 315.5 27.9 335 68-449 7-392 (844)
56 3uto_A Twitchin; kinase, muscl 100.0 1.1E-31 3.7E-36 305.6 17.7 174 589-774 156-332 (573)
57 4g8a_A TOLL-like receptor 4; l 100.0 8.3E-30 2.8E-34 297.5 32.4 172 47-226 15-189 (635)
58 1o6v_A Internalin A; bacterial 100.0 1E-30 3.6E-35 293.0 23.6 318 65-451 68-388 (466)
59 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-30 5.9E-35 277.9 24.2 283 54-405 33-331 (332)
60 3o6n_A APL1; leucine-rich repe 100.0 4.2E-31 1.4E-35 289.3 19.9 310 86-453 42-354 (390)
61 4fmz_A Internalin; leucine ric 100.0 1.6E-30 5.4E-35 280.1 22.7 213 65-298 44-257 (347)
62 1xku_A Decorin; proteoglycan, 100.0 3E-30 1E-34 275.7 24.6 280 52-429 29-330 (330)
63 4fmz_A Internalin; leucine ric 100.0 2E-30 6.7E-35 279.3 22.4 281 64-431 65-346 (347)
64 1o6v_A Internalin A; bacterial 100.0 1.1E-29 3.7E-34 284.7 22.9 301 65-434 90-391 (466)
65 3fe3_A MAP/microtubule affinit 100.0 2.7E-30 9.2E-35 275.1 16.6 178 588-776 13-191 (328)
66 1jl5_A Outer protein YOPM; leu 100.0 9.5E-30 3.3E-34 282.9 19.1 330 65-436 11-377 (454)
67 3bz5_A Internalin-J, INLJ; leu 100.0 5E-29 1.7E-33 277.3 23.7 312 76-450 29-351 (457)
68 2z66_A Variable lymphocyte rec 100.0 7.5E-30 2.6E-34 269.6 15.2 277 54-436 7-292 (306)
69 3zyi_A Leucine-rich repeat-con 100.0 6.3E-29 2.2E-33 277.4 23.3 201 69-301 58-259 (452)
70 3zyj_A Leucine-rich repeat-con 100.0 8.3E-29 2.9E-33 275.4 23.7 203 67-301 45-248 (440)
71 3g06_A SSPH2 (leucine-rich rep 100.0 3.7E-29 1.3E-33 286.5 20.5 281 47-436 14-302 (622)
72 3zgw_A Maternal embryonic leuc 100.0 1.4E-29 4.7E-34 271.1 15.4 179 587-775 7-186 (347)
73 4aw2_A Serine/threonine-protei 100.0 8.6E-30 2.9E-34 280.7 13.9 183 581-771 65-249 (437)
74 2z66_A Variable lymphocyte rec 100.0 9.7E-29 3.3E-33 261.1 21.4 251 92-435 10-265 (306)
75 1o6l_A RAC-beta serine/threoni 100.0 3E-29 1E-33 267.8 17.3 175 589-773 4-180 (337)
76 3niz_A Rhodanese family protei 100.0 2.6E-29 8.8E-34 266.0 16.2 180 588-777 19-198 (311)
77 2qkw_B Protein kinase; three-h 100.0 9.8E-30 3.3E-34 270.7 12.7 187 581-773 30-216 (321)
78 3v8s_A RHO-associated protein 100.0 1E-29 3.5E-34 278.0 13.1 183 582-774 61-245 (410)
79 3e7e_A HBUB1, BUB1A, mitotic c 100.0 2.2E-29 7.4E-34 273.0 14.8 178 589-774 64-261 (365)
80 3txo_A PKC-L, NPKC-ETA, protei 100.0 3E-29 1E-33 269.5 15.5 175 589-773 22-199 (353)
81 2psq_A Fibroblast growth facto 100.0 5.6E-29 1.9E-33 269.8 17.6 181 589-773 80-280 (370)
82 3fxz_A Serine/threonine-protei 100.0 8.3E-29 2.8E-33 260.3 18.4 174 588-774 18-192 (297)
83 3tki_A Serine/threonine-protei 100.0 3E-29 1E-33 266.8 15.1 179 588-775 5-184 (323)
84 4fr4_A YANK1, serine/threonine 100.0 4.6E-29 1.6E-33 270.3 16.5 174 589-773 14-189 (384)
85 2vd5_A DMPK protein; serine/th 100.0 2.2E-29 7.4E-34 275.5 13.8 184 581-772 52-237 (412)
86 3s95_A LIMK-1, LIM domain kina 100.0 1.5E-28 5E-33 260.3 19.5 176 589-773 9-197 (310)
87 4dc2_A Protein kinase C IOTA t 100.0 6.6E-29 2.2E-33 270.0 16.7 176 589-774 51-229 (396)
88 3o0g_A Cell division protein k 100.0 9.1E-29 3.1E-33 259.4 17.0 178 590-777 2-180 (292)
89 3uim_A Brassinosteroid insensi 100.0 3.6E-29 1.2E-33 267.0 14.0 193 578-773 18-210 (326)
90 2yab_A Death-associated protei 100.0 1.3E-28 4.4E-33 265.3 18.3 175 588-773 10-193 (361)
91 1ob3_A PFPK5, cell division co 100.0 3.7E-29 1.3E-33 261.9 13.4 178 590-777 2-179 (288)
92 2bdw_A Hypothetical protein K1 100.0 1.3E-28 4.4E-33 266.0 17.9 176 587-773 26-205 (362)
93 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-28 4.8E-33 257.0 17.5 201 67-299 13-216 (285)
94 3p86_A Serine/threonine-protei 100.0 7.2E-29 2.5E-33 262.1 15.3 180 587-774 34-215 (309)
95 3qd2_B Eukaryotic translation 100.0 1.2E-28 4E-33 263.6 17.0 180 588-773 4-251 (332)
96 3soa_A Calcium/calmodulin-depe 100.0 1E-28 3.4E-33 273.2 17.0 177 587-773 8-188 (444)
97 3a8x_A Protein kinase C IOTA t 100.0 1.5E-28 5.1E-33 263.6 17.8 174 590-773 9-185 (345)
98 4eqm_A Protein kinase; transfe 100.0 1.1E-28 3.8E-33 259.0 16.4 178 588-774 9-188 (294)
99 1fot_A TPK1 delta, CAMP-depend 100.0 1.1E-28 3.8E-33 261.4 16.3 172 589-773 5-178 (318)
100 3c0i_A Peripheral plasma membr 100.0 1.1E-28 3.8E-33 265.6 16.2 180 588-773 22-208 (351)
101 1xjd_A Protein kinase C, theta 100.0 9.8E-29 3.3E-33 264.5 15.7 176 588-773 15-193 (345)
102 2o6q_A Variable lymphocyte rec 100.0 6.4E-28 2.2E-32 249.7 20.8 219 51-301 2-222 (270)
103 3soc_A Activin receptor type-2 100.0 1.4E-28 4.8E-33 261.7 15.9 172 589-773 23-208 (322)
104 2i0e_A Protein kinase C-beta I 100.0 1.4E-28 4.9E-33 264.1 15.7 176 588-773 18-196 (353)
105 1tki_A Titin; serine kinase, m 100.0 2.1E-28 7.3E-33 259.9 16.8 173 588-773 3-178 (321)
106 3n9x_A Phosphotransferase; mal 100.0 2E-28 6.8E-33 271.3 17.0 181 588-777 24-230 (432)
107 2nru_A Interleukin-1 receptor- 100.0 6.6E-28 2.3E-32 254.8 20.2 190 578-773 13-210 (307)
108 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.9E-28 6.5E-33 263.1 16.2 172 589-773 40-213 (350)
109 3rp9_A Mitogen-activated prote 100.0 1.1E-28 3.7E-33 276.0 14.8 181 588-777 51-262 (458)
110 2c30_A Serine/threonine-protei 100.0 3.9E-28 1.3E-32 258.0 18.4 182 579-773 24-216 (321)
111 3a62_A Ribosomal protein S6 ki 100.0 1.9E-28 6.6E-33 261.1 15.9 175 589-773 16-196 (327)
112 3h4j_B AMPK kdaid, SNF1-like p 100.0 1.9E-28 6.4E-33 261.3 15.3 175 589-775 8-184 (336)
113 3oz6_A Mitogen-activated prote 100.0 2.9E-28 1E-32 266.4 17.2 182 586-777 5-209 (388)
114 3gni_B Strad alpha; kinase fol 100.0 3.8E-28 1.3E-32 265.7 18.0 179 589-773 24-210 (389)
115 3p1a_A MYT1 kinase, membrane-a 100.0 4.9E-28 1.7E-32 256.2 17.6 174 589-773 56-231 (311)
116 2pmi_A Negative RE, cyclin-dep 100.0 3E-28 1E-32 258.6 15.8 182 589-777 4-187 (317)
117 2zv2_A Calcium/calmodulin-depe 100.0 3.8E-28 1.3E-32 255.5 16.3 175 589-774 12-213 (298)
118 3kul_A Ephrin type-A receptor 100.0 4E-28 1.4E-32 258.5 16.4 177 589-773 48-229 (325)
119 2y0a_A Death-associated protei 100.0 5.9E-28 2E-32 257.2 17.6 175 588-773 9-192 (326)
120 4agu_A Cyclin-dependent kinase 100.0 5.5E-28 1.9E-32 255.9 16.8 179 589-777 2-181 (311)
121 2vuw_A Serine/threonine-protei 100.0 2.5E-29 8.7E-34 269.3 6.3 169 589-774 19-253 (336)
122 2r5t_A Serine/threonine-protei 100.0 2.5E-28 8.4E-33 264.1 14.1 176 589-774 37-215 (373)
123 3sxs_A Cytoplasmic tyrosine-pr 100.0 7.8E-28 2.7E-32 248.9 17.3 174 589-773 7-180 (268)
124 3c4z_A Rhodopsin kinase; Ser/T 100.0 4.9E-28 1.7E-32 272.4 16.8 179 589-773 184-364 (543)
125 2y94_A 5'-AMP-activated protei 100.0 5.3E-28 1.8E-32 269.2 16.6 176 589-775 15-192 (476)
126 3lb7_A RAF proto-oncogene seri 100.0 7.2E-28 2.5E-32 254.3 16.8 174 589-772 35-208 (307)
127 4hcu_A Tyrosine-protein kinase 100.0 3.1E-28 1.1E-32 252.1 13.7 173 590-773 10-182 (269)
128 2acx_A G protein-coupled recep 100.0 5E-28 1.7E-32 272.9 16.4 176 589-773 183-360 (576)
129 1luf_A Muscle-specific tyrosin 100.0 2.4E-28 8E-33 262.6 13.2 186 584-773 41-251 (343)
130 3tt0_A Basic fibroblast growth 100.0 6.5E-28 2.2E-32 262.9 16.7 181 589-773 68-268 (382)
131 3cbl_A C-FES, proto-oncogene t 100.0 2.5E-28 8.6E-33 265.6 13.4 177 589-773 113-290 (377)
132 1wwl_A Monocyte differentiatio 100.0 5E-30 1.7E-34 271.5 -0.2 204 134-433 93-311 (312)
133 1x8b_A WEE1HU, WEE1-like prote 100.0 9.7E-28 3.3E-32 250.8 17.2 179 588-776 9-208 (289)
134 1kob_A Twitchin; kinase, intra 100.0 1.4E-27 4.8E-32 259.6 18.6 174 588-773 49-225 (387)
135 3vhe_A Vascular endothelial gr 99.9 2.4E-28 8.3E-33 264.2 12.6 190 580-773 12-270 (359)
136 1ozn_A Reticulon 4 receptor; N 99.9 5.9E-28 2E-32 252.3 14.8 207 65-300 32-241 (285)
137 3qup_A Tyrosine-protein kinase 99.9 4.7E-28 1.6E-32 257.9 14.4 183 588-773 21-214 (323)
138 3dbq_A Dual specificity protei 99.9 4.6E-28 1.6E-32 260.2 14.2 174 589-772 8-183 (343)
139 3l9p_A Anaplastic lymphoma kin 99.9 2.5E-28 8.6E-33 264.5 11.9 181 589-773 70-261 (367)
140 3kk8_A Calcium/calmodulin depe 99.9 2.2E-27 7.5E-32 247.8 18.4 175 588-773 4-182 (284)
141 4euu_A Serine/threonine-protei 99.9 1.7E-27 5.7E-32 253.2 17.7 175 589-772 8-189 (319)
142 2ivs_A Proto-oncogene tyrosine 99.9 8.4E-28 2.9E-32 254.8 15.3 181 589-773 22-227 (314)
143 3ork_A Serine/threonine protei 99.9 3.3E-28 1.1E-32 257.6 11.9 178 588-773 10-194 (311)
144 4ejn_A RAC-alpha serine/threon 99.9 2.2E-28 7.4E-33 272.4 11.0 177 588-773 146-324 (446)
145 1jl5_A Outer protein YOPM; leu 99.9 7.3E-27 2.5E-31 259.7 23.3 289 65-437 111-417 (454)
146 2zmd_A Dual specificity protei 99.9 8.1E-28 2.8E-32 262.5 15.3 173 590-772 56-230 (390)
147 2qol_A Ephrin receptor; recept 99.9 5.6E-28 1.9E-32 262.1 13.9 177 589-773 44-225 (373)
148 3uc3_A Serine/threonine-protei 99.9 9.1E-28 3.1E-32 259.4 15.0 173 589-775 19-194 (361)
149 3gbz_A Kinase, CMGC CDK; ssgci 99.9 5E-28 1.7E-32 258.3 12.8 180 587-777 31-216 (329)
150 3gen_A Tyrosine-protein kinase 99.9 8.3E-28 2.8E-32 250.9 14.0 174 589-773 23-196 (283)
151 2z80_A TOLL-like receptor 2, v 99.9 2.9E-28 9.8E-33 262.9 10.8 274 65-434 52-334 (353)
152 3dls_A PAS domain-containing s 99.9 5E-28 1.7E-32 258.7 12.5 178 587-775 21-206 (335)
153 3f3z_A Calcium/calmodulin-depe 99.9 2.5E-27 8.6E-32 246.4 17.4 174 587-773 6-183 (277)
154 1cm8_A Phosphorylated MAP kina 99.9 1.1E-27 3.7E-32 259.4 15.1 175 588-777 23-204 (367)
155 3ugc_A Tyrosine-protein kinase 99.9 7.1E-28 2.4E-32 253.0 13.2 177 589-774 9-193 (295)
156 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-29 1E-33 266.1 2.5 218 109-431 31-250 (317)
157 3ttj_A Mitogen-activated prote 99.9 1.1E-27 3.7E-32 267.1 15.1 172 588-773 60-238 (464)
158 2yex_A Serine/threonine-protei 99.9 2.4E-27 8.1E-32 246.4 16.6 178 588-774 5-183 (276)
159 2pvf_A Fibroblast growth facto 99.9 2.4E-27 8.2E-32 253.7 16.9 181 589-773 34-234 (334)
160 3q4u_A Activin receptor type-1 99.9 2.9E-27 1E-31 249.0 17.1 175 588-774 6-193 (301)
161 3zyj_A Leucine-rich repeat-con 99.9 1.1E-26 3.7E-31 258.3 22.6 237 56-299 45-294 (440)
162 3og7_A AKAP9-BRAF fusion prote 99.9 7.5E-28 2.6E-32 252.0 12.3 175 588-772 22-196 (289)
163 1u5q_A Serine/threonine protei 99.9 2E-27 6.8E-32 255.2 15.9 170 589-772 53-224 (348)
164 3zyi_A Leucine-rich repeat-con 99.9 1.2E-26 4.1E-31 258.9 22.7 237 56-299 56-305 (452)
165 1t46_A HOMO sapiens V-KIT hard 99.9 1.6E-27 5.4E-32 252.6 14.7 181 589-773 22-222 (313)
166 1vzo_A Ribosomal protein S6 ki 99.9 5.7E-28 1.9E-32 260.5 11.3 175 589-772 53-234 (355)
167 1rjb_A FL cytokine receptor; k 99.9 1.3E-27 4.6E-32 256.8 14.2 182 588-773 43-249 (344)
168 2x4f_A Myosin light chain kina 99.9 3E-27 1E-31 256.2 16.9 168 594-773 93-263 (373)
169 3mwu_A Calmodulin-domain prote 99.9 1.7E-27 5.9E-32 268.2 15.2 175 588-773 20-198 (486)
170 3hko_A Calcium/calmodulin-depe 99.9 1.5E-27 5.1E-32 256.5 14.1 185 585-772 21-248 (345)
171 4aaa_A Cyclin-dependent kinase 99.9 2E-27 6.8E-32 253.9 14.9 179 589-777 24-203 (331)
172 3lij_A Calcium/calmodulin depe 99.9 2.6E-27 8.8E-32 267.2 16.5 175 588-773 35-213 (494)
173 4fvq_A Tyrosine-protein kinase 99.9 1.1E-27 3.6E-32 250.9 12.3 174 589-777 7-196 (289)
174 3mi9_A Cell division protein k 99.9 2E-27 6.9E-32 256.1 14.8 181 589-777 16-207 (351)
175 2eue_A Carbon catabolite derep 99.9 2.4E-27 8.1E-32 246.3 14.8 175 589-775 12-188 (275)
176 3is5_A Calcium-dependent prote 99.9 2.3E-27 7.7E-32 247.8 14.7 177 588-772 20-200 (285)
177 2w4o_A Calcium/calmodulin-depe 99.9 2E-27 6.8E-32 255.6 14.5 171 588-773 51-225 (349)
178 1wwl_A Monocyte differentiatio 99.9 2.6E-29 9E-34 266.0 -0.3 263 47-408 23-310 (312)
179 3poz_A Epidermal growth factor 99.9 1.6E-27 5.5E-32 254.1 13.5 175 590-773 15-194 (327)
180 3kn6_A Ribosomal protein S6 ki 99.9 3.6E-27 1.2E-31 251.0 15.9 164 595-773 16-184 (325)
181 2izr_A Casein kinase I isoform 99.9 1.9E-27 6.4E-32 254.0 13.6 174 589-774 8-193 (330)
182 3pfq_A PKC-B, PKC-beta, protei 99.9 3E-27 1E-31 275.1 16.4 176 588-773 339-517 (674)
183 4e5w_A Tyrosine-protein kinase 99.9 3.7E-27 1.3E-31 248.4 15.6 176 590-773 21-204 (302)
184 2a2a_A Death-associated protei 99.9 4.3E-27 1.5E-31 250.2 16.1 175 588-773 10-193 (321)
185 3llt_A Serine/threonine kinase 99.9 3.6E-27 1.2E-31 255.1 15.7 180 580-774 25-235 (360)
186 3mtl_A Cell division protein k 99.9 9.9E-28 3.4E-32 255.4 11.0 177 590-777 2-179 (324)
187 2rku_A Serine/threonine-protei 99.9 1.2E-26 4.2E-31 243.4 19.2 175 589-773 14-190 (294)
188 3cok_A Serine/threonine-protei 99.9 3.8E-27 1.3E-31 245.2 15.1 177 588-773 9-187 (278)
189 3kmu_A ILK, integrin-linked ki 99.9 2.7E-27 9.3E-32 245.1 13.9 172 589-774 9-184 (271)
190 3q5i_A Protein kinase; CDPK, m 99.9 7.8E-27 2.7E-31 263.9 18.8 175 588-773 34-223 (504)
191 3brb_A Proto-oncogene tyrosine 99.9 1.8E-27 6.2E-32 252.2 12.7 186 585-773 29-224 (313)
192 2y7j_A Phosphorylase B kinase 99.9 8.8E-27 3E-31 252.1 18.2 182 581-773 85-274 (365)
193 3i6u_A CDS1, serine/threonine- 99.9 4.7E-27 1.6E-31 259.0 16.3 174 587-772 132-315 (419)
194 2owb_A Serine/threonine-protei 99.9 1E-26 3.4E-31 248.9 18.3 175 589-773 40-216 (335)
195 1ua2_A CAK, cell division prot 99.9 3.2E-27 1.1E-31 254.0 14.4 181 587-777 7-191 (346)
196 2qr7_A Ribosomal protein S6 ki 99.9 2.2E-27 7.5E-32 254.1 13.0 171 587-773 19-195 (342)
197 3fdn_A Serine/threonine-protei 99.9 5.3E-27 1.8E-31 244.2 15.6 174 589-774 8-183 (279)
198 1mp8_A Focal adhesion kinase 1 99.9 1.8E-27 6.1E-32 248.1 11.8 175 589-773 14-192 (281)
199 1p4o_A Insulin-like growth fac 99.9 3E-27 1E-31 251.5 13.7 183 587-773 22-215 (322)
200 1t4h_A Serine/threonine-protei 99.9 1.4E-26 4.9E-31 242.4 18.5 171 591-773 27-205 (290)
201 3oja_A Leucine-rich immune mol 99.9 7.7E-28 2.6E-32 270.2 9.3 171 90-301 35-208 (487)
202 3kex_A Receptor tyrosine-prote 99.9 1.4E-27 4.9E-32 254.3 10.9 175 590-773 13-192 (325)
203 1zy4_A Serine/threonine-protei 99.9 6.5E-27 2.2E-31 246.5 15.6 180 588-777 4-209 (303)
204 1qcf_A Haematopoetic cell kina 99.9 2.4E-27 8.2E-32 264.3 13.0 175 588-773 186-360 (454)
205 3lm5_A Serine/threonine-protei 99.9 4E-27 1.4E-31 251.0 14.1 183 582-773 20-208 (327)
206 3pg1_A Mitogen-activated prote 99.9 3.8E-27 1.3E-31 255.1 14.1 187 580-777 12-212 (362)
207 3mdy_A Bone morphogenetic prot 99.9 1.1E-26 3.8E-31 248.8 17.5 181 582-774 29-222 (337)
208 1opk_A P150, C-ABL, proto-onco 99.9 3.6E-27 1.2E-31 265.5 14.2 175 589-773 219-394 (495)
209 2xir_A Vascular endothelial gr 99.9 3.2E-27 1.1E-31 250.5 13.0 190 580-773 17-225 (316)
210 2fst_X Mitogen-activated prote 99.9 3.1E-27 1.1E-31 255.5 13.1 175 588-777 27-208 (367)
211 2r3i_A Cell division protein k 99.9 5.5E-27 1.9E-31 246.7 14.5 178 590-776 3-181 (299)
212 3t9t_A Tyrosine-protein kinase 99.9 3.8E-27 1.3E-31 243.6 13.0 173 590-773 8-180 (267)
213 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-27 7.7E-32 251.7 11.5 267 65-436 10-281 (317)
214 2h34_A Serine/threonine-protei 99.9 1.1E-26 3.8E-31 245.6 16.8 177 588-773 32-210 (309)
215 3bhy_A Death-associated protei 99.9 1.1E-26 3.9E-31 242.2 16.6 174 589-773 4-186 (283)
216 4eut_A Serine/threonine-protei 99.9 5.7E-27 1.9E-31 256.7 15.0 175 589-772 8-189 (396)
217 3lxl_A Tyrosine-protein kinase 99.9 1E-26 3.6E-31 248.0 16.6 175 590-773 23-205 (327)
218 1nxk_A MAP kinase-activated pr 99.9 1.1E-26 3.9E-31 254.2 17.3 169 589-773 60-238 (400)
219 3g33_A Cell division protein k 99.9 9.3E-27 3.2E-31 246.1 15.7 177 588-774 7-195 (308)
220 3eb0_A Putative uncharacterize 99.9 5.6E-27 1.9E-31 255.7 14.4 177 587-777 4-220 (383)
221 3nyv_A Calmodulin-domain prote 99.9 4.2E-27 1.4E-31 265.0 13.7 175 588-773 24-203 (484)
222 2w5a_A Serine/threonine-protei 99.9 5E-27 1.7E-31 244.3 13.0 179 589-773 5-191 (279)
223 2ac3_A MAP kinase-interacting 99.9 1.1E-26 3.7E-31 246.6 15.7 175 588-772 10-195 (316)
224 1qpc_A LCK kinase; alpha beta 99.9 1.1E-26 3.7E-31 241.9 15.4 173 589-772 12-184 (279)
225 2h6d_A 5'-AMP-activated protei 99.9 1.2E-26 4.1E-31 241.1 15.6 175 589-774 10-186 (276)
226 4fcg_A Uncharacterized protein 99.9 1.8E-26 6.1E-31 245.6 17.2 217 87-436 79-295 (328)
227 3lxp_A Non-receptor tyrosine-p 99.9 2.2E-26 7.6E-31 244.3 17.8 174 590-773 30-212 (318)
228 2i1m_A Macrophage colony-stimu 99.9 4.3E-27 1.5E-31 251.6 12.2 182 588-773 44-241 (333)
229 1k9a_A Carboxyl-terminal SRC k 99.9 1.5E-26 5.1E-31 257.5 16.7 169 589-773 192-361 (450)
230 3fme_A Dual specificity mitoge 99.9 9.3E-27 3.2E-31 243.7 14.2 175 589-771 6-182 (290)
231 2a19_B Interferon-induced, dou 99.9 8.6E-27 2.9E-31 243.2 13.8 172 587-773 8-196 (284)
232 3gxj_A TGF-beta receptor type- 99.9 1.2E-27 4.1E-32 252.2 7.2 174 589-774 2-188 (303)
233 3eqc_A Dual specificity mitoge 99.9 7.2E-27 2.5E-31 252.7 13.5 173 589-773 32-205 (360)
234 2vgo_A Serine/threonine-protei 99.9 1.8E-26 6.2E-31 240.9 16.0 173 589-773 13-187 (284)
235 3qyz_A Mitogen-activated prote 99.9 1.5E-26 5.1E-31 250.5 15.9 179 588-777 25-210 (364)
236 2wtk_C Serine/threonine-protei 99.9 2.1E-26 7.3E-31 242.9 16.7 179 588-773 3-186 (305)
237 4f0f_A Serine/threonine-protei 99.9 2.3E-26 7.9E-31 240.4 16.8 170 589-772 18-200 (287)
238 2wqm_A Serine/threonine-protei 99.9 2.3E-26 8E-31 243.3 17.0 180 588-773 30-211 (310)
239 1fmk_A C-SRC, P60-SRC, tyrosin 99.9 6E-27 2.1E-31 260.8 12.9 174 589-773 183-356 (452)
240 3kfa_A Tyrosine-protein kinase 99.9 6.7E-27 2.3E-31 244.6 12.4 176 588-773 11-187 (288)
241 3dtc_A Mitogen-activated prote 99.9 1.2E-26 4E-31 240.4 14.0 171 589-773 6-189 (271)
242 3f66_A Hepatocyte growth facto 99.9 1.3E-26 4.4E-31 243.7 14.4 177 589-773 24-207 (298)
243 1b6c_B TGF-B superfamily recep 99.9 3.6E-26 1.2E-30 245.4 18.1 180 582-773 34-226 (342)
244 1csn_A Casein kinase-1; phosph 99.9 2.4E-26 8.3E-31 241.6 16.3 175 588-774 8-194 (298)
245 3a7i_A MST3 kinase, serine/thr 99.9 3.7E-26 1.3E-30 240.9 17.6 173 589-773 21-194 (303)
246 2xrw_A Mitogen-activated prote 99.9 2.2E-26 7.6E-31 249.7 16.2 172 588-773 23-201 (371)
247 2ycf_A Serine/threonine-protei 99.9 1.5E-26 5.1E-31 246.2 14.5 173 588-772 8-190 (322)
248 3op5_A Serine/threonine-protei 99.9 6.8E-27 2.3E-31 253.3 12.0 179 588-774 33-237 (364)
249 1u59_A Tyrosine-protein kinase 99.9 2.9E-26 1E-30 239.7 16.3 175 590-773 9-188 (287)
250 3lzb_A Epidermal growth factor 99.9 9.4E-27 3.2E-31 248.1 12.8 176 589-773 14-194 (327)
251 3oja_A Leucine-rich immune mol 99.9 1.1E-26 3.8E-31 260.7 14.0 223 109-436 31-256 (487)
252 4e7w_A Glycogen synthase kinas 99.9 9.6E-27 3.3E-31 254.5 13.1 175 589-777 39-220 (394)
253 2buj_A Serine/threonine-protei 99.9 1.4E-26 4.7E-31 245.9 14.0 180 589-774 28-219 (317)
254 1phk_A Phosphorylase kinase; g 99.9 4.2E-26 1.4E-30 239.8 17.4 175 587-772 14-197 (298)
255 1mqb_A Ephrin type-A receptor 99.9 2.2E-26 7.5E-31 246.0 15.3 177 589-773 43-225 (333)
256 3byv_A Rhoptry kinase; malaria 99.9 2.9E-27 1E-31 257.4 8.6 175 589-773 72-277 (377)
257 2jam_A Calcium/calmodulin-depe 99.9 2.1E-26 7.3E-31 242.9 15.0 172 588-773 7-182 (304)
258 1xbb_A Tyrosine-protein kinase 99.9 2.5E-26 8.6E-31 240.7 15.4 176 589-773 15-195 (291)
259 2pml_X PFPK7, Ser/Thr protein 99.9 1.1E-26 3.7E-31 250.1 12.8 176 589-774 30-226 (348)
260 2eva_A TAK1 kinase - TAB1 chim 99.9 1.3E-26 4.4E-31 244.8 13.1 170 590-773 8-178 (307)
261 4exu_A Mitogen-activated prote 99.9 2.1E-26 7.1E-31 249.9 15.1 174 588-777 40-220 (371)
262 2yfx_A Tyrosine-protein kinase 99.9 1.3E-26 4.6E-31 247.1 13.2 181 589-773 29-220 (327)
263 1j1b_A Glycogen synthase kinas 99.9 1.4E-26 4.7E-31 255.4 13.5 174 590-777 54-235 (420)
264 3nsz_A CK II alpha, casein kin 99.9 3.8E-26 1.3E-30 243.9 16.3 170 589-777 35-209 (330)
265 3an0_A Dual specificity mitoge 99.9 2.2E-26 7.5E-31 246.9 14.3 178 588-773 49-228 (340)
266 3g2f_A Bone morphogenetic prot 99.9 1.8E-26 6.3E-31 247.0 13.7 170 589-773 12-203 (336)
267 4azs_A Methyltransferase WBDD; 99.9 5.1E-27 1.7E-31 267.1 9.9 165 597-774 241-415 (569)
268 2vwi_A Serine/threonine-protei 99.9 5.4E-27 1.9E-31 247.2 9.2 183 588-774 13-202 (303)
269 3com_A Serine/threonine-protei 99.9 4.9E-26 1.7E-30 241.2 16.4 174 587-773 26-200 (314)
270 3c1x_A Hepatocyte growth facto 99.9 1.3E-26 4.3E-31 251.2 11.9 175 591-773 90-271 (373)
271 2j7t_A Serine/threonine-protei 99.9 1.3E-26 4.4E-31 244.3 11.6 173 588-771 17-190 (302)
272 2w1i_A JAK2; chromosomal rearr 99.9 3.8E-26 1.3E-30 243.5 15.0 176 589-773 40-223 (326)
273 2wei_A Calmodulin-domain prote 99.9 3.5E-26 1.2E-30 239.0 14.5 178 585-773 17-198 (287)
274 2h8h_A Proto-oncogene tyrosine 99.9 1.1E-26 3.8E-31 263.9 11.4 175 588-773 265-439 (535)
275 3cc6_A Protein tyrosine kinase 99.9 3.4E-26 1.2E-30 238.4 14.1 175 589-773 11-189 (281)
276 3pls_A Macrophage-stimulating 99.9 3.3E-26 1.1E-30 240.6 14.0 175 591-773 22-203 (298)
277 1fvr_A Tyrosine-protein kinase 99.9 4.1E-26 1.4E-30 243.3 14.6 177 590-773 25-216 (327)
278 2x7f_A TRAF2 and NCK-interacti 99.9 2.3E-26 7.8E-31 245.2 12.6 177 585-772 19-203 (326)
279 3cek_A Dual specificity protei 99.9 3.2E-26 1.1E-30 242.6 13.5 175 588-772 26-202 (313)
280 2clq_A Mitogen-activated prote 99.9 8.8E-26 3E-30 236.9 16.7 174 591-773 23-198 (295)
281 2b9h_A MAP kinase FUS3, mitoge 99.9 6.5E-26 2.2E-30 244.5 16.0 178 588-776 9-200 (353)
282 3rgf_A Cyclin-dependent kinase 99.9 1.7E-26 5.8E-31 253.9 11.3 182 588-777 18-214 (405)
283 3coi_A Mitogen-activated prote 99.9 4.8E-26 1.6E-30 245.5 14.6 174 588-777 22-202 (353)
284 4fl3_A Tyrosine-protein kinase 99.9 3.3E-26 1.1E-30 264.4 14.0 169 596-773 375-547 (635)
285 2v62_A Serine/threonine-protei 99.9 2.3E-26 8E-31 247.1 11.6 176 589-773 36-235 (345)
286 2z62_A TOLL-like receptor 4, v 99.9 2E-25 6.8E-30 231.9 17.7 210 67-302 30-242 (276)
287 2ozo_A Tyrosine-protein kinase 99.9 4.4E-26 1.5E-30 262.7 13.9 174 591-773 336-514 (613)
288 3g06_A SSPH2 (leucine-rich rep 99.9 3.7E-25 1.3E-29 253.4 21.2 248 65-418 61-308 (622)
289 3ll6_A Cyclin G-associated kin 99.9 8.3E-26 2.8E-30 241.9 14.8 174 590-771 28-223 (337)
290 3kvw_A DYRK2, dual specificity 99.9 1.5E-25 5.2E-30 247.6 17.4 172 588-774 95-275 (429)
291 1blx_A Cyclin-dependent kinase 99.9 8.2E-26 2.8E-30 240.9 14.3 177 588-774 9-195 (326)
292 2i6l_A Mitogen-activated prote 99.9 1.2E-25 4.2E-30 238.7 15.3 178 588-777 9-203 (320)
293 2pzi_A Probable serine/threoni 99.9 8.1E-26 2.8E-30 264.8 15.0 167 589-773 79-252 (681)
294 3e3p_A Protein kinase, putativ 99.9 8.2E-26 2.8E-30 244.5 13.6 186 583-777 16-210 (360)
295 3q60_A ROP5B; pseudokinase, tr 99.9 7.7E-26 2.6E-30 245.6 13.4 170 590-772 62-265 (371)
296 1byg_A CSK, protein (C-termina 99.9 5.2E-26 1.8E-30 236.6 11.5 169 589-773 20-189 (278)
297 2jii_A Serine/threonine-protei 99.9 3.7E-26 1.3E-30 246.3 10.6 171 589-773 41-243 (352)
298 1u46_A ACK-1, activated CDC42 99.9 9.4E-26 3.2E-30 236.2 13.1 177 589-773 17-199 (291)
299 3aln_A Dual specificity mitoge 99.9 1.3E-25 4.3E-30 239.6 13.9 175 589-771 21-198 (327)
300 2z62_A TOLL-like receptor 4, v 99.9 7E-25 2.4E-29 227.7 19.1 174 70-299 12-192 (276)
301 2iwi_A Serine/threonine-protei 99.9 4.6E-26 1.6E-30 241.2 10.3 179 585-775 26-215 (312)
302 3a99_A Proto-oncogene serine/t 99.9 5.3E-26 1.8E-30 241.6 10.8 179 585-775 38-225 (320)
303 3rfs_A Internalin B, repeat mo 99.9 1.7E-25 5.8E-30 231.7 13.9 181 85-297 37-218 (272)
304 4hgt_A Casein kinase I isoform 99.9 2.2E-25 7.5E-30 234.0 14.9 176 587-774 6-191 (296)
305 1z57_A Dual specificity protei 99.9 3.8E-25 1.3E-29 236.9 16.5 171 588-773 12-209 (339)
306 3uzp_A CKI-delta, CKID, casein 99.9 3.5E-25 1.2E-29 232.5 15.8 175 588-774 7-191 (296)
307 2j0j_A Focal adhesion kinase 1 99.9 2E-25 6.7E-30 258.9 14.5 176 588-773 388-567 (656)
308 1wak_A Serine/threonine-protei 99.9 2.5E-25 8.6E-30 244.0 14.6 172 588-774 35-269 (397)
309 3sv0_A Casein kinase I-like; t 99.9 3.8E-25 1.3E-29 246.6 15.6 175 588-774 5-189 (483)
310 1z7x_W Ribonuclease inhibitor; 99.9 5.9E-28 2E-32 270.5 -7.9 231 66-299 29-299 (461)
311 3fhr_A MAP kinase-activated pr 99.9 6.1E-25 2.1E-29 235.0 15.8 169 588-772 26-203 (336)
312 2y4i_B KSR2, HKSR2, kinase sup 99.9 5.1E-26 1.7E-30 241.7 6.5 176 588-773 31-209 (319)
313 2dyl_A Dual specificity mitoge 99.9 4.4E-25 1.5E-29 234.3 13.2 174 589-772 24-198 (318)
314 3p23_A Serine/threonine-protei 99.9 3.8E-25 1.3E-29 244.2 12.8 170 590-772 24-200 (432)
315 2vx3_A Dual specificity tyrosi 99.9 1.7E-24 5.8E-29 236.0 16.8 174 588-774 52-234 (382)
316 2rio_A Serine/threonine-protei 99.9 3.6E-25 1.2E-29 245.1 11.6 174 590-772 15-206 (434)
317 1z7x_W Ribonuclease inhibitor; 99.9 7.2E-28 2.5E-32 269.8 -10.6 311 65-433 56-413 (461)
318 2eu9_A Dual specificity protei 99.9 2E-24 6.7E-29 233.0 16.4 171 588-773 17-214 (355)
319 1p9a_G Platelet glycoprotein I 99.9 7.5E-24 2.5E-28 221.1 18.9 203 61-299 6-210 (290)
320 3rfs_A Internalin B, repeat mo 99.9 5.3E-24 1.8E-28 220.4 17.5 204 65-307 41-245 (272)
321 3qa8_A MGC80376 protein; kinas 99.9 4.5E-25 1.5E-29 251.1 10.0 176 589-773 13-198 (676)
322 1q8y_A SR protein kinase; tran 99.9 1.3E-24 4.4E-29 236.2 12.7 171 589-774 18-211 (373)
323 3m19_A Variable lymphocyte rec 99.9 8.4E-24 2.9E-28 216.2 17.7 190 52-299 3-194 (251)
324 3en9_A Glycoprotease, O-sialog 99.9 4.5E-25 1.5E-29 249.7 7.9 161 593-772 339-510 (540)
325 2o6q_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 212.9 22.4 178 90-298 17-195 (270)
326 1p9a_G Platelet glycoprotein I 99.9 3.3E-23 1.1E-27 216.2 20.1 204 107-432 5-209 (290)
327 2xwt_C Thyrotropin receptor; s 99.9 2.2E-23 7.4E-28 211.5 16.7 194 66-294 32-236 (239)
328 3uqc_A Probable conserved tran 99.9 2.5E-23 8.7E-28 216.8 15.8 146 588-743 29-176 (286)
329 4glp_A Monocyte differentiatio 99.9 3.9E-24 1.3E-28 226.1 8.6 202 137-432 92-308 (310)
330 3goz_A Leucine-rich repeat-con 99.9 2.1E-25 7.3E-30 241.1 -1.8 105 70-175 3-123 (362)
331 1h6u_A Internalin H; cell adhe 99.9 5.7E-23 1.9E-27 216.6 16.4 190 66-298 42-231 (308)
332 4glp_A Monocyte differentiatio 99.9 1.6E-23 5.6E-28 221.2 10.0 204 89-298 91-308 (310)
333 2xwt_C Thyrotropin receptor; s 99.9 1.2E-22 4.1E-27 206.1 15.8 197 113-429 32-237 (239)
334 3m19_A Variable lymphocyte rec 99.9 6.2E-22 2.1E-26 202.3 19.6 159 115-305 17-176 (251)
335 4ay9_X Follicle-stimulating ho 99.9 1.6E-22 5.4E-27 217.4 15.9 201 70-301 14-219 (350)
336 3m2w_A MAP kinase-activated pr 99.9 2E-22 6.7E-27 211.9 16.2 148 588-748 15-172 (299)
337 1h6u_A Internalin H; cell adhe 99.9 2.6E-22 9E-27 211.5 16.6 176 85-301 37-212 (308)
338 2ast_B S-phase kinase-associat 99.9 8E-25 2.7E-29 234.3 -2.9 211 52-295 35-258 (336)
339 2ca6_A RAN GTPase-activating p 99.9 3E-25 1E-29 242.4 -7.5 251 80-435 23-320 (386)
340 3cvr_A Invasion plasmid antige 99.9 1.5E-22 5.2E-27 228.8 14.4 197 50-302 39-248 (571)
341 1zar_A RIO2 kinase; serine kin 99.9 1.2E-22 4.2E-27 210.6 11.9 156 582-772 82-253 (282)
342 3dzo_A Rhoptry kinase domain; 99.9 5.6E-23 1.9E-27 225.9 9.2 172 590-771 78-280 (413)
343 2o6s_A Variable lymphocyte rec 99.9 3.6E-22 1.2E-26 197.8 13.8 183 54-285 7-190 (208)
344 4ay9_X Follicle-stimulating ho 99.9 1.9E-21 6.6E-26 209.0 15.5 242 92-430 12-258 (350)
345 3cvr_A Invasion plasmid antige 99.8 5.6E-21 1.9E-25 216.0 16.3 195 113-418 60-254 (571)
346 2o6s_A Variable lymphocyte rec 99.8 6.4E-21 2.2E-25 188.8 14.8 80 92-174 10-89 (208)
347 2ast_B S-phase kinase-associat 99.8 3.1E-23 1.1E-27 221.9 -2.7 251 89-437 47-312 (336)
348 3goz_A Leucine-rich repeat-con 99.8 7.2E-23 2.5E-27 221.3 -0.5 263 93-435 2-301 (362)
349 4b8c_D Glucose-repressible alc 99.8 7.1E-22 2.4E-26 231.8 5.8 224 26-302 130-359 (727)
350 2ca6_A RAN GTPase-activating p 99.8 1.5E-22 5.2E-27 220.9 -0.8 206 65-298 32-288 (386)
351 1m9s_A Internalin B; cell inva 99.8 5.3E-20 1.8E-24 210.5 15.9 189 71-302 27-215 (605)
352 3e6j_A Variable lymphocyte rec 99.8 8.3E-20 2.8E-24 183.5 14.3 151 47-201 12-173 (229)
353 1h6t_A Internalin B; cell adhe 99.8 8.6E-20 3E-24 190.5 14.1 174 86-300 43-216 (291)
354 3ogk_B Coronatine-insensitive 99.8 7.3E-22 2.5E-26 228.3 -5.3 323 65-433 164-528 (592)
355 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-19 8.9E-24 178.6 13.5 156 189-435 13-170 (220)
356 2xot_A Amphoterin-induced prot 99.8 2.4E-19 8E-24 193.5 13.5 174 69-298 22-203 (361)
357 2v70_A SLIT-2, SLIT homolog 2 99.8 7.1E-19 2.4E-23 175.5 15.5 155 116-301 15-170 (220)
358 2v9t_B SLIT homolog 2 protein 99.8 9E-19 3.1E-23 174.7 15.0 151 69-251 15-166 (220)
359 2v9t_B SLIT homolog 2 protein 99.8 5.7E-19 1.9E-23 176.2 12.9 145 54-201 11-166 (220)
360 1h6t_A Internalin B; cell adhe 99.8 3.5E-19 1.2E-23 185.9 11.7 170 65-275 46-215 (291)
361 3ogk_B Coronatine-insensitive 99.8 1E-21 3.5E-26 227.1 -8.5 344 66-449 139-524 (592)
362 1m9s_A Internalin B; cell inva 99.8 4.2E-19 1.4E-23 203.1 12.9 176 64-280 42-217 (605)
363 2xot_A Amphoterin-induced prot 99.8 3.6E-19 1.2E-23 192.0 11.7 146 54-200 18-176 (361)
364 1zth_A RIO1 serine protein kin 99.8 3.2E-19 1.1E-23 182.6 10.0 141 591-748 48-221 (258)
365 1dce_A Protein (RAB geranylger 99.8 4E-21 1.4E-25 218.5 -6.9 182 86-301 346-550 (567)
366 3e6j_A Variable lymphocyte rec 99.8 5.4E-18 1.9E-22 170.2 16.2 154 92-300 22-175 (229)
367 1xeu_A Internalin C; cellular 99.7 7.5E-19 2.6E-23 180.4 7.5 173 88-302 18-190 (263)
368 4ezg_A Putative uncharacterize 99.7 3.1E-18 1.1E-22 167.8 10.1 155 109-298 41-195 (197)
369 2p1m_B Transport inhibitor res 99.7 1.9E-20 6.5E-25 216.5 -7.0 228 65-298 105-386 (594)
370 4b8c_D Glucose-repressible alc 99.7 2.3E-19 7.9E-24 210.5 1.1 228 89-435 173-408 (727)
371 1dce_A Protein (RAB geranylger 99.7 1.2E-20 4.2E-25 214.5 -10.3 122 238-425 442-567 (567)
372 4ezg_A Putative uncharacterize 99.7 5E-18 1.7E-22 166.3 8.9 103 66-172 45-147 (197)
373 1xeu_A Internalin C; cellular 99.7 6.1E-18 2.1E-22 173.6 9.8 168 66-275 20-187 (263)
374 2p1m_B Transport inhibitor res 99.7 1.6E-19 5.4E-24 208.8 -7.2 328 65-432 130-520 (594)
375 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.9E-21 155.8 13.0 133 240-436 11-144 (192)
376 1w8a_A SLIT protein; signaling 99.7 8E-17 2.7E-21 156.9 11.5 131 68-204 11-143 (192)
377 4gyi_A RIO2 kinase; protein ki 99.7 1.6E-16 5.5E-21 168.5 12.0 148 584-747 89-266 (397)
378 2o6r_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 149.5 12.3 134 54-204 7-141 (177)
379 2ell_A Acidic leucine-rich nuc 99.6 1.2E-16 4.1E-21 152.1 7.6 138 65-206 24-165 (168)
380 2wfh_A SLIT homolog 2 protein 99.6 1.2E-15 3.9E-20 148.6 11.6 127 69-201 14-140 (193)
381 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.4E-20 144.9 11.8 86 186-298 23-109 (168)
382 2je0_A Acidic leucine-rich nuc 99.6 2.6E-16 8.9E-21 146.5 5.2 129 65-196 17-149 (149)
383 2o6r_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 143.1 12.9 135 238-436 8-142 (177)
384 3sb4_A Hypothetical leucine ri 99.6 1.8E-16 6.2E-21 168.6 3.6 283 66-425 26-328 (329)
385 2wfh_A SLIT homolog 2 protein 99.6 5.6E-15 1.9E-19 143.7 13.6 130 239-433 12-141 (193)
386 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.2E-20 140.7 9.6 85 186-297 16-101 (149)
387 3sb4_A Hypothetical leucine ri 99.6 9.3E-16 3.2E-20 163.1 7.2 257 64-401 48-328 (329)
388 1a9n_A U2A', U2A'; complex (nu 99.5 6.2E-15 2.1E-19 141.3 6.5 128 65-200 19-153 (176)
389 3g39_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 135.0 9.9 104 68-175 12-116 (170)
390 4fdw_A Leucine rich hypothetic 99.5 9.1E-13 3.1E-17 143.1 21.4 110 88-207 112-222 (401)
391 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 135.8 9.0 134 107-297 14-153 (176)
392 2r9u_A Variable lymphocyte rec 99.5 1.4E-13 4.6E-18 131.5 10.8 103 68-174 15-118 (174)
393 1ds9_A Outer arm dynein; leuci 99.5 7.6E-16 2.6E-20 150.8 -5.9 161 85-298 14-186 (198)
394 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.5E-21 155.7 -11.0 134 65-205 18-158 (198)
395 3g39_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 127.5 11.4 108 91-203 11-118 (170)
396 2r9u_A Variable lymphocyte rec 99.4 8.5E-13 2.9E-17 125.9 11.3 106 91-201 14-119 (174)
397 4fdw_A Leucine rich hypothetic 99.4 6.2E-12 2.1E-16 136.5 19.5 260 67-430 115-382 (401)
398 2ifg_A High affinity nerve gro 99.3 2.2E-12 7.6E-17 138.0 9.8 106 54-174 8-116 (347)
399 3tm0_A Aminoglycoside 3'-phosp 99.3 8.4E-12 2.9E-16 127.8 12.1 149 585-746 9-214 (263)
400 3un9_A NLR family member X1; l 99.2 1.7E-13 5.8E-18 147.4 -6.9 67 233-299 179-254 (372)
401 2ifg_A High affinity nerve gro 99.2 2.1E-11 7E-16 130.4 9.3 105 92-201 11-117 (347)
402 3un9_A NLR family member X1; l 99.2 1.8E-13 6.2E-18 147.2 -7.3 46 387-432 204-253 (372)
403 1nd4_A Aminoglycoside 3'-phosp 99.1 3.9E-11 1.3E-15 122.6 7.4 140 589-746 19-215 (264)
404 4fs7_A Uncharacterized protein 99.1 1.9E-09 6.4E-14 117.3 20.5 290 82-428 64-376 (394)
405 3dxp_A Putative acyl-COA dehyd 99.0 1.5E-09 5.2E-14 116.4 11.9 145 593-746 41-249 (359)
406 4gt6_A Cell surface protein; l 99.0 3.2E-08 1.1E-12 107.5 22.4 122 67-196 66-191 (394)
407 4fs7_A Uncharacterized protein 99.0 1.8E-08 6.1E-13 109.5 19.4 271 101-428 59-353 (394)
408 2ra8_A Uncharacterized protein 98.8 3.3E-10 1.1E-14 120.7 -1.2 82 64-148 106-205 (362)
409 2ra8_A Uncharacterized protein 98.8 1.3E-09 4.4E-14 116.1 2.5 57 371-429 280-341 (362)
410 4gt6_A Cell surface protein; l 98.8 2.7E-07 9.3E-12 100.1 20.7 158 80-248 54-216 (394)
411 3rw6_A Nuclear RNA export fact 98.6 7.3E-10 2.5E-14 111.9 -5.6 22 53-74 77-99 (267)
412 3r70_A Aminoglycoside phosphot 98.6 2.4E-07 8.3E-12 97.3 13.1 137 591-746 38-238 (320)
413 4h09_A Hypothetical leucine ri 98.5 7.1E-06 2.4E-10 88.3 21.8 59 369-428 285-343 (379)
414 3sg8_A APH(2'')-ID; antibiotic 98.5 2.6E-07 8.9E-12 96.4 10.0 137 595-746 25-224 (304)
415 4gkh_A Aminoglycoside 3'-phosp 98.4 1.2E-06 4.2E-11 89.5 12.7 137 596-746 30-224 (272)
416 3tdw_A Gentamicin resistance p 98.4 1.9E-06 6.6E-11 89.7 13.9 137 595-746 24-225 (306)
417 3d1u_A Putative fructosamine-3 98.3 1.6E-06 5.5E-11 89.2 10.6 78 592-675 17-97 (288)
418 3ovc_A Hygromycin-B 4-O-kinase 98.3 4.5E-06 1.5E-10 89.1 13.6 79 590-676 41-122 (362)
419 1io0_A Tropomodulin; LRR prote 98.3 7.5E-08 2.5E-12 92.4 -1.4 66 232-297 31-106 (185)
420 3ats_A Putative uncharacterize 98.2 3.2E-06 1.1E-10 90.2 8.7 83 595-677 25-122 (357)
421 1io0_A Tropomodulin; LRR prote 98.2 1.7E-07 5.8E-12 89.9 -1.3 64 234-297 90-164 (185)
422 4h09_A Hypothetical leucine ri 98.1 0.00022 7.6E-09 76.5 22.0 57 371-428 264-320 (379)
423 3rw6_A Nuclear RNA export fact 98.1 1.9E-06 6.4E-11 86.9 4.4 66 369-436 169-238 (267)
424 2q83_A YTAA protein; 2635576, 98.0 7.4E-05 2.5E-09 78.9 14.6 144 595-745 37-252 (346)
425 2olc_A MTR kinase, methylthior 97.9 4.5E-05 1.5E-09 82.5 10.8 77 595-673 35-120 (397)
426 3jr1_A Putative fructosamine-3 97.7 0.00021 7.2E-09 74.0 12.0 142 593-741 39-232 (312)
427 3f7w_A Putative fructosamine-3 97.6 0.00014 4.7E-09 74.8 9.9 79 591-675 16-97 (288)
428 2pyw_A Uncharacterized protein 97.5 0.00031 1.1E-08 76.5 11.3 76 594-672 38-122 (420)
429 2ppq_A HSK, HK, homoserine kin 97.5 0.00058 2E-08 71.3 12.0 160 581-745 8-217 (322)
430 3e4g_A ATP synthase subunit S, 97.3 6.2E-05 2.1E-09 70.2 1.3 82 66-147 62-150 (176)
431 3e4g_A ATP synthase subunit S, 97.2 6.5E-05 2.2E-09 70.0 1.1 67 81-147 53-125 (176)
432 3rfe_A Platelet glycoprotein I 97.2 0.00048 1.7E-08 61.2 6.4 37 113-149 32-68 (130)
433 3dxq_A Choline/ethanolamine ki 97.2 0.00092 3.1E-08 69.1 9.0 74 592-675 20-95 (301)
434 1zyl_A Hypothetical protein YI 97.1 0.0041 1.4E-07 65.0 13.7 145 596-746 32-224 (328)
435 1nw1_A Choline kinase (49.2 KD 97.0 0.001 3.5E-08 72.4 8.3 73 595-675 78-159 (429)
436 2qg7_A Ethanolamine kinase PV0 97.0 0.0039 1.3E-07 68.1 12.0 74 595-675 113-188 (458)
437 3csv_A Aminoglycoside phosphot 96.9 0.0035 1.2E-07 65.6 11.2 145 596-747 24-219 (333)
438 3feg_A Choline/ethanolamine ki 96.9 0.0026 9E-08 67.6 9.9 144 595-745 55-254 (379)
439 3rfe_A Platelet glycoprotein I 96.7 0.0024 8.1E-08 56.6 6.6 57 240-298 11-69 (130)
440 3c5i_A Choline kinase; choline 96.6 0.0028 9.6E-08 67.5 7.7 74 595-675 38-121 (369)
441 3i1a_A Spectinomycin phosphotr 96.4 0.015 5.2E-07 60.9 11.6 32 715-746 206-237 (339)
442 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0005 1.7E-08 65.3 0.1 117 157-297 37-170 (197)
443 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0006 2.1E-08 64.8 0.4 15 186-200 156-170 (197)
444 3f2s_A CK, chetk-alpha, cholin 96.0 0.018 6.2E-07 61.4 9.3 147 595-745 57-280 (401)
445 3mes_A Choline kinase; malaria 94.9 0.056 1.9E-06 58.1 8.7 74 595-675 75-157 (424)
446 3g15_A CK, chetk-alpha, cholin 92.8 0.24 8.2E-06 53.0 8.6 30 716-745 245-280 (401)
447 2ks1_B Epidermal growth factor 88.0 0.055 1.9E-06 36.8 -1.2 27 492-518 12-38 (44)
448 2l2t_A Receptor tyrosine-prote 87.6 0.049 1.7E-06 37.0 -1.6 29 490-518 9-37 (44)
449 2k1k_A Ephrin type-A receptor 86.3 0.064 2.2E-06 35.3 -1.6 25 488-512 8-32 (38)
450 3cxl_A N-chimerin; SH2, RHO-GA 83.0 0.14 4.7E-06 55.9 -1.9 63 594-659 146-215 (463)
451 4ano_A ESSB; membrane protein, 81.5 2.6 9.1E-05 40.2 6.6 87 646-747 48-135 (219)
452 2jwa_A Receptor tyrosine-prote 80.6 0.1 3.5E-06 35.3 -2.5 29 491-520 12-40 (44)
453 4ann_A ESSB; membrane protein, 79.8 2.2 7.4E-05 40.6 5.4 89 646-748 43-131 (215)
454 2lz0_A Uncharacterized protein 59.4 11 0.00036 31.0 4.5 37 107-144 15-51 (100)
455 3ls8_A Phosphatidylinositol 3- 49.3 1.9E+02 0.0066 31.9 13.8 86 651-744 402-501 (614)
456 2lz0_A Uncharacterized protein 48.6 21 0.0007 29.2 4.6 49 121-171 5-53 (100)
457 1iij_A ERBB-2 receptor protein 36.3 1.6 5.6E-05 27.8 -3.0 23 495-518 12-34 (35)
458 2klu_A T-cell surface glycopro 31.9 6.5 0.00022 28.9 -0.9 8 496-503 12-19 (70)
459 2l34_A TYRO protein tyrosine k 25.5 5.6 0.00019 25.1 -1.9 25 490-514 6-30 (33)
460 1cja_A Protein (actin-fragmin 25.2 1.8E+02 0.006 29.5 7.8 140 594-747 73-239 (342)
461 2x6h_A GH13170P, VPS34, phosph 23.8 36 0.0012 38.4 2.7 44 694-744 530-575 (696)
462 2yle_A Protein spire homolog 1 20.8 1.4E+02 0.0046 28.4 5.6 60 674-739 34-93 (229)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-46 Score=445.70 Aligned_cols=93 Identities=30% Similarity=0.405 Sum_probs=77.4
Q ss_pred CCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCCCCC---cceee
Q 004020 368 AGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPNFRQ---NVIVK 444 (779)
Q Consensus 368 ~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~---~~~~~ 444 (779)
..+.|+.|+|++|+++|.+|..|+++++|+.||||+|+|+|.||..+..+++|++|||++|+|+|.||...+ .....
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~ 733 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence 456788888888888888999999999999999999999999999999999999999999999999997443 33456
Q ss_pred eCCCCCCCCCCCCCCCCC
Q 004020 445 TDGNPDIGKDSSSFTPKS 462 (779)
Q Consensus 445 ~~~n~~~~~~~~~~~~~~ 462 (779)
+.||+.+|+.|.. +|.
T Consensus 734 ~~gN~~Lcg~~l~--~C~ 749 (768)
T 3rgz_A 734 FLNNPGLCGYPLP--RCD 749 (768)
T ss_dssp GCSCTEEESTTSC--CCC
T ss_pred hcCCchhcCCCCc--CCC
Confidence 8899999998753 554
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3e-44 Score=417.87 Aligned_cols=417 Identities=18% Similarity=0.244 Sum_probs=292.6
Q ss_pred CCChhHHHHHHHHHHHcCCCC----------CCCCC-CCCCCcc---eeeEeCCCCcEEEEEecCCCccccCCccccCCC
Q 004020 24 SQSSSDAAAMQALKTSLGNPA----------SLGWT-DPDPCKW---KHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLS 89 (779)
Q Consensus 24 ~~~~~~~~~l~~~k~~~~~~~----------~~~w~-~~~~C~w---~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~ 89 (779)
+....|..||.++++++..+. ..+|. +.|||.| .||+|+..+||+.|+|+++++.|.+|++|++|+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCc
Confidence 345679999999999985432 12685 5689999 999998889999999999999999999999999
Q ss_pred CCcEEEcccC----------------------------------------------------------------------
Q 004020 90 SLTVLEVMKN---------------------------------------------------------------------- 99 (779)
Q Consensus 90 ~L~~L~Ls~N---------------------------------------------------------------------- 99 (779)
+|++|+|++|
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 9999999998
Q ss_pred --------ccccCCCCCCCCCCccEEecCCCCCCC------------------CCccccc--CCCCccEEEcccCCCCCC
Q 004020 100 --------KLTGQIPSLSGLSSLQEVLFDDNNFTS------------------VPSDFFK--GLTSLQTISLDYNSFDSW 151 (779)
Q Consensus 100 --------~l~~~~~~~~~l~~L~~L~l~~N~l~~------------------~~~~~~~--~l~~L~~L~Ls~N~l~~~ 151 (779)
+++++++.|+++++|++|+|++|++++ +|. .+. ++++|++|+|++|++.+
T Consensus 186 l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~- 263 (636)
T 4eco_A 186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLT- 263 (636)
T ss_dssp TTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCS-
T ss_pred hhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCc-
Confidence 444533379999999999999999999 555 467 99999999999999977
Q ss_pred CCcccccCCCCCceEeccCce-eEe-ecCCCccCCCC------CcccEEEccCCCCCCcCCC--cccc-CCcceeeccCC
Q 004020 152 VIPESLKDATGLQRFSANGAN-ITG-TIPDFLGGDTI------PGLMHLHLAFNFLQGPIPL--SFGK-SSIQTLWLNGQ 220 (779)
Q Consensus 152 ~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~-~~L~~l~l~~n 220 (779)
.+|..+.++++|+.|++++|+ ++| .+|..++ .+ ++|++|+|++|+++ .+|. .++. .+|+.|++++|
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~--~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQ--ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH--HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHH--hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 789999999999999999998 998 8898876 44 89999999999999 8888 7876 67999999999
Q ss_pred CCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCC-CcEEEccCCccccccChhhhCCC--CCCEEEccCcccc
Q 004020 221 KGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSS-LQDFSVRDNQLTGIVPSSLVNLH--SLAVVNLTNNLFQ 297 (779)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~-L~~L~l~~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~ 297 (779)
++...++ .+..+++|+.|+|++|+++..++.+..+++ |++|++++|+++ .+|..+..++ +|+.|+|++|+++
T Consensus 341 ~l~g~ip----~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 341 QLEGKLP----AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp CCEEECC----CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred cCccchh----hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 8874444 466788899999999999855556888888 999999999988 7888877655 8899999999998
Q ss_pred ccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCc---h----------------------hcccccC
Q 004020 298 GQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYP---A----------------------VLAESWK 352 (779)
Q Consensus 298 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------------~~~~~~~ 352 (779)
+.+|..+...........+...+....+............+..+... . .+.....
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEEC
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEEC
Confidence 88887555111111111111111111111111000000000111000 0 0001111
Q ss_pred CCCCCCCCCCcccc--CCCCCeEEEEccCccccccccccccccccCCeEec------cCccccccCCccCCCCCCCCcee
Q 004020 353 GNNPCNSDWKGVSC--DAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLML------SGNELTGTIPKELTTLPSLEMLD 424 (779)
Q Consensus 353 ~~~~~~~~~~~~~~--~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L------s~N~l~g~iP~~l~~l~~L~~L~ 424 (779)
..+... ... ... ...++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..+..+++|++||
T Consensus 496 s~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 496 RFNKLT-KLS-DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp CSSCCC-BCC-GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred cCCcCC-ccC-hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 111100 000 011 144566777777777776 6666667777777777 44666667777777777777777
Q ss_pred ccCCcccccCCC--CCCcceeeeCCCCCCCCC
Q 004020 425 VSNNHLFGKVPN--FRQNVIVKTDGNPDIGKD 454 (779)
Q Consensus 425 Ls~N~l~g~iP~--~~~~~~~~~~~n~~~~~~ 454 (779)
|++|++ +.||. +.....+.+.+|+..|.+
T Consensus 573 Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 573 IGSNDI-RKVNEKITPNISVLDIKDNPNISID 603 (636)
T ss_dssp CCSSCC-CBCCSCCCTTCCEEECCSCTTCEEE
T ss_pred CCCCcC-CccCHhHhCcCCEEECcCCCCcccc
Confidence 777777 56665 223335555666665543
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-43 Score=416.97 Aligned_cols=412 Identities=18% Similarity=0.260 Sum_probs=288.5
Q ss_pred cCCCChhHHHHHHHHHHHcCCCCCCCCC------CCCC--Ccc------------eeeEeCCCCcEEEEEecCCCccccC
Q 004020 22 VNSQSSSDAAAMQALKTSLGNPASLGWT------DPDP--CKW------------KHIQCSPSNRVTRIQIGGQNIEGTL 81 (779)
Q Consensus 22 ~~~~~~~~~~~l~~~k~~~~~~~~~~w~------~~~~--C~w------------~gv~c~~~~~v~~l~l~~~~l~~~~ 81 (779)
.++....|.+||++||+++.++ +|. ..+| |.| .||+|+..++|+.|+|+++++.|.+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred ccccchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 3445678999999999999776 563 2355 999 9999998899999999999999999
Q ss_pred CccccCCCCCcEEEc-ccCccccC--------------------------------------------------------
Q 004020 82 PKELNSLSSLTVLEV-MKNKLTGQ-------------------------------------------------------- 104 (779)
Q Consensus 82 p~~l~~l~~L~~L~L-s~N~l~~~-------------------------------------------------------- 104 (779)
|++|++|++|++|+| ++|.+.|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77765544
Q ss_pred --------------------CC-CCCCCCCccEEecCCCCCCC------------------CCccc-ccCCCCccEEEcc
Q 004020 105 --------------------IP-SLSGLSSLQEVLFDDNNFTS------------------VPSDF-FKGLTSLQTISLD 144 (779)
Q Consensus 105 --------------------~~-~~~~l~~L~~L~l~~N~l~~------------------~~~~~-~~~l~~L~~L~Ls 144 (779)
+| .|+++++|++|+|++|+|++ +|+.. |.++++|++|+|+
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 45 68899999999999999999 66653 4499999999999
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCce-eEe-ecCCCccC-----CCCCcccEEEccCCCCCCcCCC--cccc-CCcce
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGAN-ITG-TIPDFLGG-----DTIPGLMHLHLAFNFLQGPIPL--SFGK-SSIQT 214 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~-----~~l~~L~~L~L~~N~l~~~~p~--~~~~-~~L~~ 214 (779)
+|++.+ .+|..|.++++|+.|+|++|+ ++| .+|..++. ..+++|++|+|++|+++ .+|. .++. .+|+.
T Consensus 500 ~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 500 NCPNMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp SCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred CCCCCc-cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 999877 789999999999999999998 988 78876641 13459999999999999 8898 7876 67999
Q ss_pred eeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCC-CcEEEccCCccccccChhhhCCCC--CCEEEc
Q 004020 215 LWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSS-LQDFSVRDNQLTGIVPSSLVNLHS--LAVVNL 291 (779)
Q Consensus 215 l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~-L~~L~l~~N~l~~~~p~~l~~l~~--L~~L~L 291 (779)
|++++|.+. .++ .+..+++|+.|+|++|+++..++.+..+++ |+.|+|++|+|+ .+|..+..++. |+.|+|
T Consensus 578 L~Ls~N~l~-~lp----~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 578 LDCVHNKVR-HLE----AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp EECTTSCCC-BCC----CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred EECCCCCcc-cch----hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence 999999887 333 577899999999999999944446888998 999999999998 78988887754 999999
Q ss_pred cCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCcc--ccCCC
Q 004020 292 TNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGV--SCDAG 369 (779)
Q Consensus 292 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 369 (779)
++|+++|.+|.+..... .....++..+....+........+...+..+........ .....|.. .+.+. .|...
T Consensus 652 s~N~l~g~ip~l~~~l~--~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~-~~~~~~~~l~nl 727 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMD--DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPEN-SLKPKDGNYKNT 727 (876)
T ss_dssp CSSCTTTTSSSCSSCTT--TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTT-SSSCTTSCCTTG
T ss_pred cCCcCCCccccchhhhc--cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChH-Hhcccccccccc
Confidence 99999998876431100 000001111111111111111111111111110000000 00000000 00000 01122
Q ss_pred CCeEEEEccCcccccccccccc--ccccCCeEeccCccccccCCccCCCCCCCCceeccC------CcccccCCC----C
Q 004020 370 GNITVVNLKNLGLSGTISSNFS--RLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSN------NHLFGKVPN----F 437 (779)
Q Consensus 370 ~~L~~L~Ls~n~l~g~~p~~~~--~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~------N~l~g~iP~----~ 437 (779)
++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |++++.+|. +
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 36777777777777 5666665 67777777777777775 677777777777777755 666666664 2
Q ss_pred CCcceeeeCCCCC
Q 004020 438 RQNVIVKTDGNPD 450 (779)
Q Consensus 438 ~~~~~~~~~~n~~ 450 (779)
.....+.+.+|..
T Consensus 806 ~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 806 PSLIQLQIGSNDI 818 (876)
T ss_dssp SSCCEEECCSSCC
T ss_pred CCCCEEECCCCCC
Confidence 2333455555543
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-42 Score=368.64 Aligned_cols=293 Identities=26% Similarity=0.478 Sum_probs=216.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCC-CCCC-CCCCCc--ceeeEeCCC---CcEEEEEecCCCccc--cCCccccCCCCCcEE
Q 004020 24 SQSSSDAAAMQALKTSLGNPAS-LGWT-DPDPCK--WKHIQCSPS---NRVTRIQIGGQNIEG--TLPKELNSLSSLTVL 94 (779)
Q Consensus 24 ~~~~~~~~~l~~~k~~~~~~~~-~~w~-~~~~C~--w~gv~c~~~---~~v~~l~l~~~~l~~--~~p~~l~~l~~L~~L 94 (779)
.|.++|.+||++||+++.++.. .+|. +.|||. |.||+|+.. ++|++|+|++|+++| .+|+.|..+++|++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L 81 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence 4788999999999999987653 3785 468998 999999864 799999999999999 999999999999999
Q ss_pred Eccc-CccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCce
Q 004020 95 EVMK-NKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGAN 172 (779)
Q Consensus 95 ~Ls~-N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~ 172 (779)
+|++ |.+.+.+| .|.++++|++|+|++|++++..+..|.++++|++|+|++|++.+ .+|..+..+++|++|++++|+
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSC
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCc
Confidence 9995 99998877 78888888888888888886666667777777777777777654 455555555555555555555
Q ss_pred eEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCC
Q 004020 173 ITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGP 252 (779)
Q Consensus 173 l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 252 (779)
+++.+|..++ .++ ++|+.|+|++|++++.
T Consensus 161 l~~~~p~~l~--~l~-------------------------------------------------~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 161 ISGAIPDSYG--SFS-------------------------------------------------KLFTSMTISRNRLTGK 189 (313)
T ss_dssp CEEECCGGGG--CCC-------------------------------------------------TTCCEEECCSSEEEEE
T ss_pred ccCcCCHHHh--hhh-------------------------------------------------hcCcEEECcCCeeecc
Confidence 5555555544 333 1445555555555544
Q ss_pred CCC-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccc
Q 004020 253 LPD-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRV 331 (779)
Q Consensus 253 ~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (779)
+|. +..++ |++|++++|++++.+|..+..+++|+.|+|++|++++.+|.+
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------- 240 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV---------------------------- 240 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC----------------------------
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcc----------------------------
Confidence 442 44444 666666666666666677777777777777777776554431
Q ss_pred hhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCC
Q 004020 332 NVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIP 411 (779)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP 411 (779)
...++|++|+|++|+++|.+|..|..+++|++|+|++|+|+|.+|
T Consensus 241 -----------------------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 241 -----------------------------------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp -----------------------------------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred -----------------------------------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 011367777777778888888888999999999999999999999
Q ss_pred ccCCCCCCCCceeccCCc-cccc
Q 004020 412 KELTTLPSLEMLDVSNNH-LFGK 433 (779)
Q Consensus 412 ~~l~~l~~L~~L~Ls~N~-l~g~ 433 (779)
.. ..+++|+.|++++|+ +.|.
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEEST
T ss_pred CC-ccccccChHHhcCCCCccCC
Confidence 76 888899999998887 5553
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=349.12 Aligned_cols=341 Identities=20% Similarity=0.201 Sum_probs=257.3
Q ss_pred CCCCCccee--eEeCCC---------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCC-C-CCCCCCCccE
Q 004020 50 DPDPCKWKH--IQCSPS---------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQI-P-SLSGLSSLQE 116 (779)
Q Consensus 50 ~~~~C~w~g--v~c~~~---------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~-~~~~l~~L~~ 116 (779)
.++.|.|.+ |.|+.. .++++|+|++|++++..|..|..+++|++|+|++|.+.+.+ + .|.++++|++
T Consensus 4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCE
Confidence 346677766 888753 46999999999999998999999999999999999998655 3 7999999999
Q ss_pred EecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCccc--ccCCCCCceEeccCceeEeecCCC-ccCCCCCcccEEE
Q 004020 117 VLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPES--LKDATGLQRFSANGANITGTIPDF-LGGDTIPGLMHLH 193 (779)
Q Consensus 117 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~L~~L~ 193 (779)
|+|++|+++.+++..|.++++|++|+|++|++.+ .++.. |..+++|+.|++++|++++..|.. +. .+++|++|+
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~ 160 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL--NMRRFHVLD 160 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT-HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG--GCTTCCEEE
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCCCCc-cccCcccccCcccCCEEECCCCccCccCcccccC--CCCcccEEe
Confidence 9999999999999999999999999999999975 33444 899999999999999999888876 54 799999999
Q ss_pred ccCCCCCCcCCCcccc---CCcceeeccCCCCCCCCCCch-----hhhcCCCCccEEEeecCcccCCCCC----------
Q 004020 194 LAFNFLQGPIPLSFGK---SSIQTLWLNGQKGDSKLNGSV-----AVIQNMTSLTQLWLHGNSFTGPLPD---------- 255 (779)
Q Consensus 194 L~~N~l~~~~p~~~~~---~~L~~l~l~~n~~~~~~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~---------- 255 (779)
|++|++++..|..+.. ..++.|++++|.+........ ..+..+++|++|+|++|++++.+|.
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 9999999999988866 468888888887765543322 1233557788888888877653321
Q ss_pred ----------------------------CC--CCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCC
Q 004020 256 ----------------------------LS--GLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNS 305 (779)
Q Consensus 256 ----------------------------~~--~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 305 (779)
+. ..++|+.|++++|++.+.+|..+..+++|+.|+|++|++++.+|..+.
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 11 125788888888888888888888888888888888888877765432
Q ss_pred CcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcccccc
Q 004020 306 PVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGT 385 (779)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ 385 (779)
. .++|+.|+|++|.+++.
T Consensus 321 ~--------------------------------------------------------------l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 321 G--------------------------------------------------------------LTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp T--------------------------------------------------------------CTTCCEEECCSSCCCEE
T ss_pred C--------------------------------------------------------------cccCCEEECCCCccCCc
Confidence 2 12566666666666666
Q ss_pred ccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCC----CCCcceeeeCCCCCCCCCC
Q 004020 386 ISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN----FRQNVIVKTDGNPDIGKDS 455 (779)
Q Consensus 386 ~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~----~~~~~~~~~~~n~~~~~~~ 455 (779)
.|..|+++++|++|+|++|++++..|..+..+++|++|+|++|++++..|. +.....+.+.+|+..|..+
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 666666666666666666666666666666666666666666666654443 1233355566666665544
No 6
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=2.6e-38 Score=328.44 Aligned_cols=177 Identities=28% Similarity=0.459 Sum_probs=156.0
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
++|++.+.||+|+||+||+|+.. +++.||||++.+... .....+.+.+|++++++++|||||+++++|.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 57999999999999999999865 789999999976532 2334577999999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
|||++|+|.+++.+.. .+++..+..|+.||+.||+|||+ ++|+||||||+|||++.++++||+|||+|+.+.
T Consensus 112 Ey~~gG~L~~~i~~~~-----~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~ 183 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG-----SFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLS 183 (311)
T ss_dssp CCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred ecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcCCceecC
Confidence 9999999999996543 58999999999999999999997 899999999999999999999999999999876
Q ss_pred CCCCcccccccccCCcccccccccccC
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
...........+||+.|||||++.+..
T Consensus 184 ~~~~~~~~~~~~GTp~YmAPEvl~~~~ 210 (311)
T 4aw0_A 184 PESKQARANSFVGTAQYVSPELLTEKS 210 (311)
T ss_dssp TTTTCCCBCCCCSCGGGCCHHHHHHSC
T ss_pred CCCCcccccCcccCcccCCHHHHcCCC
Confidence 544333445678999999999998754
No 7
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=2.7e-38 Score=334.01 Aligned_cols=177 Identities=23% Similarity=0.399 Sum_probs=150.7
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
++|++.+.||+|+||.||+|+.. +|+.||||++..........+++.+|++++++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 68999999999999999999875 69999999998776666777889999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
||++|+|.+++..++. ..+++.+++.|+.||+.||+|||+ ++||||||||+|||++++|.+||+|||+|+....
T Consensus 104 y~~gg~L~~~i~~~~~---~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKG---VLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp CCTTCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred CCCCCcHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEcccccceeecC
Confidence 9999999999965432 257899999999999999999997 8999999999999999999999999999987643
Q ss_pred CCCcccccccccCCcccccccccccC
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
. .......+||+.|||||++.+..
T Consensus 178 ~--~~~~~~~~GT~~YmAPE~l~~~~ 201 (350)
T 4b9d_A 178 T--VELARACIGTPYYLSPEICENKP 201 (350)
T ss_dssp H--HHHHHHHHSCCTTCCHHHHTTCC
T ss_pred C--cccccccCCCccccCHHHHCCCC
Confidence 2 12234567999999999998753
No 8
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=321.81 Aligned_cols=176 Identities=30% Similarity=0.541 Sum_probs=146.5
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
.+++++.++||+|+||+||+|+++ ..||||+++....+....++|.+|++++++++|||||++++++.. +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEE
Confidence 357788999999999999999875 369999998666566677889999999999999999999998754 56899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
||++|+|.++++... ..+++.++..|+.||++||+|||+ ++||||||||+|||+++++++||+|||+|+....
T Consensus 112 y~~gGsL~~~l~~~~----~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 112 WCEGSSLYKHLHVQE----TKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp CCSSCBHHHHHHTSC----CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred cCCCCCHHHHHhhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCceeccc
Confidence 999999999996543 258999999999999999999997 8999999999999999999999999999987654
Q ss_pred CCCcccccccccCCcccccccccccC
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
..........+||+.|||||++.+..
T Consensus 185 ~~~~~~~~~~~GT~~ymAPE~l~~~~ 210 (307)
T 3omv_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQD 210 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCS
T ss_pred CCcceeecccccCCCccCHHHhhccC
Confidence 33333334568999999999997653
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.1e-36 Score=347.59 Aligned_cols=373 Identities=17% Similarity=0.169 Sum_probs=255.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
.++++|+|++|++++..+..|.++++|++|+|++|++++.+| .|.++++|++|+|++|+++.++++.|.++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 468889999999988888788888999999999988888777 7888888999999988888888888888888888888
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEe-ecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-------------
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITG-TIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK------------- 209 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------------- 209 (779)
++|++.+ ..+..++++++|++|++++|.+++ .+|..++ .+++|++|+|++|++++..|..++.
T Consensus 112 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 112 VETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFS--NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp TTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG--TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred cCCcccc-ccccccCCCCCCCEEeCCCCcccceechHhHh--hcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 8888876 455678888888888888888875 5677776 6888888888888887766654432
Q ss_pred ---------------CCcceeeccCCCCCC--------------------------------------------------
Q 004020 210 ---------------SSIQTLWLNGQKGDS-------------------------------------------------- 224 (779)
Q Consensus 210 ---------------~~L~~l~l~~n~~~~-------------------------------------------------- 224 (779)
.+|+.|++++|.+..
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 134444444443210
Q ss_pred ----------------------------------------------------CCC-----------------CchhhhcC
Q 004020 225 ----------------------------------------------------KLN-----------------GSVAVIQN 235 (779)
Q Consensus 225 ----------------------------------------------------~~~-----------------~~~~~~~~ 235 (779)
.++ .....+..
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~ 348 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCC
T ss_pred cccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhcc
Confidence 000 00002234
Q ss_pred CCCccEEEeecCcccCCC--C-CCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCC-CCCCC-cccc
Q 004020 236 MTSLTQLWLHGNSFTGPL--P-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTP-KFNSP-VRFD 310 (779)
Q Consensus 236 l~~L~~L~L~~N~l~~~~--~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p-~~~~~-~~~~ 310 (779)
+++|++|+|++|.+++.. | .+..+++|++|++++|.+++ +|..+..+++|+.|+|++|++++.+| ..+.. ..+.
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 556666666666766652 3 36677888888888888874 66888888888888888888888776 33222 1111
Q ss_pred cccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccc
Q 004020 311 MAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNF 390 (779)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~ 390 (779)
....++ +......+........+. ......+..........+...++|+.|+|++|++++..|..|
T Consensus 428 ~L~l~~--------n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 428 YLDISY--------TNTKIDFDGIFLGLTSLN------TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp EEECTT--------SCCEECCTTTTTTCTTCC------EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred EEECcC--------CCCCccchhhhcCCCCCC------EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 111111 110000000000011110 000100000000000123345689999999999999999999
Q ss_pred cccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCC----CC-CcceeeeCCCCCCCCCCC
Q 004020 391 SRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN----FR-QNVIVKTDGNPDIGKDSS 456 (779)
Q Consensus 391 ~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~----~~-~~~~~~~~~n~~~~~~~~ 456 (779)
+++++|++|+|++|++++.+|..+..+++|++|||++|+|+ .+|. +. ....+.+.+|++.|..+.
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999999999999999999999999999999999 4554 22 245678899999997664
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=362.02 Aligned_cols=397 Identities=19% Similarity=0.231 Sum_probs=251.0
Q ss_pred CCcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCC-C-CCCCCCCccEEecCCCCCCCCCcc
Q 004020 53 PCKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQI-P-SLSGLSSLQEVLFDDNNFTSVPSD 130 (779)
Q Consensus 53 ~C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~-~~~~l~~L~~L~l~~N~l~~~~~~ 130 (779)
.|.|..|.+ -..++++|||++|.|++..|..|.++++|++|+|++|.+.+.+ | .|.++++|++|+|++|+++.++++
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 356777777 5578999999999999888889999999999999999665544 4 789999999999999999998888
Q ss_pred cccCCCCccEEEcccCCCCCCCCcc--cccCCCCCceEeccCceeEeecC-CCccCCCCCcccEEEccCCCCCCcCCCcc
Q 004020 131 FFKGLTSLQTISLDYNSFDSWVIPE--SLKDATGLQRFSANGANITGTIP-DFLGGDTIPGLMHLHLAFNFLQGPIPLSF 207 (779)
Q Consensus 131 ~~~~l~~L~~L~Ls~N~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 207 (779)
.|.++++|++|+|++|++.+ .+|. .|.++++|+.|+|++|.+++..+ ..++ .+++|++|+|++|.+++..|..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEESSCCCCCCSGGG
T ss_pred HccCCcccCEeeCcCCCCCc-ccccCccccccCCCCEEECCCCcccccccchhHh--hCCCCCEEECCCCcCCeeCHHHc
Confidence 89999999999999999876 3343 48889999999999998887655 3565 68888888888888877666554
Q ss_pred cc---CC------------------------------cceeeccCCCCCCCCCCc-------------------------
Q 004020 208 GK---SS------------------------------IQTLWLNGQKGDSKLNGS------------------------- 229 (779)
Q Consensus 208 ~~---~~------------------------------L~~l~l~~n~~~~~~~~~------------------------- 229 (779)
+. .+ |+.|++++|.+.......
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 32 12 566666666433211110
Q ss_pred ----------------------------------hhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCcccc
Q 004020 230 ----------------------------------VAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTG 274 (779)
Q Consensus 230 ----------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~ 274 (779)
...+..+++|+.|+|++|++++.+| .|.++++|++|+|++|++++
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 1123344555555555555555544 25555556666666665555
Q ss_pred ccChhhhCCCCCCEEEccCccccccCCCCCCCc-ccccc-cCCCCccc-C---------CCCcccCccch----------
Q 004020 275 IVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPV-RFDMA-KGSNSFCL-D---------DAGVACDGRVN---------- 332 (779)
Q Consensus 275 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~-~~~~~-~~~~~~~~-~---------~~~~~~~~~~~---------- 332 (779)
..|..|..+++|+.|+|++|++++..+..+... .+... ...|.+.. . ...+... .++
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIH 407 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCC-CCCCCCTTCCEEE
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcc-cccccccccceee
Confidence 555555566666666666666555544433211 11110 00111000 0 0000000 000
Q ss_pred ------------hhhhhcccCCCch-------------------hcccccCCCCCCCCCCC-c---cccCCCCCeEEEEc
Q 004020 333 ------------VLLSIVKSVGYPA-------------------VLAESWKGNNPCNSDWK-G---VSCDAGGNITVVNL 377 (779)
Q Consensus 333 ------------~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~-~---~~~~~~~~L~~L~L 377 (779)
......+.+.... .+.......+.....|. + ..+...++|+.|+|
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 0000000000000 00000000000000010 0 11234578899999
Q ss_pred cCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCC-CCCcceeeeCCCCCCCCCCC
Q 004020 378 KNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN-FRQNVIVKTDGNPDIGKDSS 456 (779)
Q Consensus 378 s~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~-~~~~~~~~~~~n~~~~~~~~ 456 (779)
++|+|++..|..|..+++|+.|+|++|+|++..|..+. ++|++|||++|+|+|.+|. +.....+.+.+||+.|..+.
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccccc
Confidence 99999988888899999999999999999976666665 7899999999999999987 44555788899999997653
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=340.10 Aligned_cols=334 Identities=17% Similarity=0.189 Sum_probs=279.7
Q ss_pred cceeeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCC
Q 004020 55 KWKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNN 123 (779)
Q Consensus 55 ~w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~ 123 (779)
.|..|.|+.. .+++.|+|++|++++..+..|..+++|++|+|++|.+++..| .|.++++|++|+|++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3678888742 368999999999998888999999999999999999999877 89999999999999999
Q ss_pred CCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcC
Q 004020 124 FTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPI 203 (779)
Q Consensus 124 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~ 203 (779)
++.+++..|.++++|++|+|++|++.+ ..|..|..+++|+.|++++|.+++..|..|. .+++|++|+|++|++++..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESCCCSSCC
T ss_pred CCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCCcCcccC
Confidence 999999999999999999999999976 6788899999999999999999998888886 7999999999999999766
Q ss_pred CCcccc-CCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccChhhh
Q 004020 204 PLSFGK-SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVPSSLV 281 (779)
Q Consensus 204 p~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~ 281 (779)
+..+.. .+|+.|++++|.+..... ..+..+++|+.|+|++|.+.+.+| ......+|+.|++++|++++..+..+.
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 666665 679999999998876543 346678999999999998877666 455566999999999999965557899
Q ss_pred CCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCC
Q 004020 282 NLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDW 361 (779)
Q Consensus 282 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (779)
.+++|+.|+|++|++++..+..+.
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~-------------------------------------------------------- 269 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLH-------------------------------------------------------- 269 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCT--------------------------------------------------------
T ss_pred CccccCeeECCCCcCCccChhhcc--------------------------------------------------------
Confidence 999999999999999877664322
Q ss_pred CccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCC---CC
Q 004020 362 KGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN---FR 438 (779)
Q Consensus 362 ~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~---~~ 438 (779)
..++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|++|+|++|++++..+. +.
T Consensus 270 ------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 270 ------ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343 (477)
T ss_dssp ------TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHT
T ss_pred ------ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHh
Confidence 123789999999999999999999999999999999999976677789999999999999999876542 11
Q ss_pred CcceeeeCCCCCCCCCCC
Q 004020 439 QNVIVKTDGNPDIGKDSS 456 (779)
Q Consensus 439 ~~~~~~~~~n~~~~~~~~ 456 (779)
......+.++...|..|.
T Consensus 344 ~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 344 RRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TTTSSCCTTCCCBEEESG
T ss_pred hhhccccCccCceeCCch
Confidence 111234556666676554
No 12
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=327.63 Aligned_cols=180 Identities=33% Similarity=0.563 Sum_probs=145.7
Q ss_pred cCCcccceecccccEEEEEEEEc------CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
++|.+.++||+|+||.||+|+++ +++.||||+++.. +....++|.+|++++++++|||||+++++|.+.+..
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 118 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL 118 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence 56788899999999999999864 4788999999754 355667899999999999999999999999999999
Q ss_pred EEEEEecCCCChhhHhhhcccC----------CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEE----------GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM 733 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~----------~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~ 733 (779)
|+|||||++|+|.++++..... ...+++|.+++.|+.||++||+|||+ ++||||||||+|||+++++
T Consensus 119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~ 195 (329)
T 4aoj_A 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGL 195 (329)
T ss_dssp EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTT
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHhhEEECCCC
Confidence 9999999999999999765321 12468999999999999999999997 8999999999999999999
Q ss_pred cEEEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 734 RAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 734 ~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
.+||+|||+|+..............+||+.|||||++.+..
T Consensus 196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~ 236 (329)
T 4aoj_A 196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRK 236 (329)
T ss_dssp EEEECCCC----------------CCCCGGGCCHHHHTTCC
T ss_pred cEEEcccccceeccCCCcceecCcccccccccChhhhcCCC
Confidence 99999999998765543333445567999999999987654
No 13
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=4e-37 Score=324.50 Aligned_cols=173 Identities=25% Similarity=0.405 Sum_probs=151.6
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.+.|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++|||||+++++|.+++..|+||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivm 150 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 150 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC--SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCch--hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 357999999999999999999875 799999999975432 23356889999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
|||++|+|.+++... .+++.++..|+.||+.||+|||+ ++||||||||+|||++.+|++||+|||+|+...
T Consensus 151 Ey~~gg~L~~~l~~~------~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 221 (346)
T 4fih_A 151 EFLEGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS 221 (346)
T ss_dssp CCCTTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred eCCCCCcHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCceecC
Confidence 999999999988542 48999999999999999999997 899999999999999999999999999999875
Q ss_pred CCCCcccccccccCCcccccccccccC
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
.... .....+||+.|||||++.+..
T Consensus 222 ~~~~--~~~~~~GTp~YmAPEvl~~~~ 246 (346)
T 4fih_A 222 KEVP--RRKSLVGTPYWMAPELISRLP 246 (346)
T ss_dssp SSSC--CBCCCCSCGGGCCHHHHTTCC
T ss_pred CCCC--cccccccCcCcCCHHHHCCCC
Confidence 4322 234568999999999987653
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-36 Score=361.55 Aligned_cols=324 Identities=26% Similarity=0.396 Sum_probs=198.6
Q ss_pred CcEEEEEecCCCccccCCccccCCC-CCcEEEcccCccccCCC-CCCC--CCCccEEecCCCCCCCCCcccccCCCCccE
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLS-SLTVLEVMKNKLTGQIP-SLSG--LSSLQEVLFDDNNFTSVPSDFFKGLTSLQT 140 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~-~~~~--l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 140 (779)
.+++.|++++|.+++.+|..+..++ +|++|+|++|++++.++ .+.. +++|++|++++|++++..+..|.++++|++
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 3566777777777766776666665 66666666666665444 3433 556666666666666555555666666666
Q ss_pred EEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccC
Q 004020 141 ISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNG 219 (779)
Q Consensus 141 L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~ 219 (779)
|+|++|++.+ .+|..+.++++|+.|++++|.+++.+|..+. .+++|++|+|++|++++.+|..++. .+|+.|++++
T Consensus 423 L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 423 LHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499 (768)
T ss_dssp EECCSSEEES-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred EECcCCcccC-cccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence 6666666654 4566666666666666666666666666554 4566666666666666666666554 4566666666
Q ss_pred CCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhh-----------------
Q 004020 220 QKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLV----------------- 281 (779)
Q Consensus 220 n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~----------------- 281 (779)
|++....+ ..++.+++|++|+|++|++++.+|. +..+++|++|++++|+++|.+|..+.
T Consensus 500 N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 500 NRLTGEIP---KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp SCCCSCCC---GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred CccCCcCC---hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 65554332 2344556666666666666655553 55566666666666666555554332
Q ss_pred -----------------------------------------------------CCCCCCEEEccCccccccCCCCCCCcc
Q 004020 282 -----------------------------------------------------NLHSLAVVNLTNNLFQGQTPKFNSPVR 308 (779)
Q Consensus 282 -----------------------------------------------------~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 308 (779)
.+++|+.|||++|+++|.+|..+....
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 234556666666666666664332211
Q ss_pred cccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccc
Q 004020 309 FDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISS 388 (779)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~ 388 (779)
+...+....+...+..+ ..+....+|+.|||++|+++|.+|.
T Consensus 657 -------~L~~L~Ls~N~l~g~ip-------------------------------~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 657 -------YLFILNLGHNDISGSIP-------------------------------DEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp -------TCCEEECCSSCCCSCCC-------------------------------GGGGGCTTCCEEECCSSCCEECCCG
T ss_pred -------cCCEEeCcCCccCCCCC-------------------------------hHHhCCCCCCEEECCCCcccCcCCh
Confidence 00001111110000000 0122335899999999999999999
Q ss_pred cccccccCCeEeccCccccccCCccCCCCCCCCceeccCCc-cccc
Q 004020 389 NFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNH-LFGK 433 (779)
Q Consensus 389 ~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~-l~g~ 433 (779)
.+++++.|++||||+|+|+|.||.. ..+..+..+.+.+|. |.|.
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred HHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 9999999999999999999999965 456667777788885 6664
No 15
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=2.6e-37 Score=322.11 Aligned_cols=180 Identities=31% Similarity=0.540 Sum_probs=152.3
Q ss_pred cCCcccceecccccEEEEEEEEc------CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
++|.+.+.||+|+||.||+|++. ++..||||+++.. +....++|.+|++++++++|||||+++++|.+++..
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 90 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL 90 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC--ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence 57888999999999999999864 4788999999754 355667899999999999999999999999999999
Q ss_pred EEEEEecCCCChhhHhhhccc--------CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcE
Q 004020 664 LLVYEYMPQGTLSRHLFNRKE--------EGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRA 735 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~--------~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~ 735 (779)
++|||||++|+|.++++.... .....++|.+++.|+.||++||+|||+ ++||||||||+|||+++++.+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~ 167 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLV 167 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCE
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEECCCCcE
Confidence 999999999999999976431 223468999999999999999999997 899999999999999999999
Q ss_pred EEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 736 KVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 736 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
||+|||+|+...............||+.|||||++.+..
T Consensus 168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~ 206 (299)
T 4asz_A 168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK 206 (299)
T ss_dssp EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCC
T ss_pred EECCcccceecCCCCceeecCceecChhhcCHHHHcCCC
Confidence 999999998765443333334457999999999997653
No 16
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=2.2e-36 Score=312.63 Aligned_cols=169 Identities=28% Similarity=0.407 Sum_probs=146.3
Q ss_pred cccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe----CCeEEEEE
Q 004020 593 SEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD----GNERLLVY 667 (779)
Q Consensus 593 ~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~lv~ 667 (779)
++.++||+|+||.||+|++. +++.||+|++..........+++.+|++++++++|||||+++++|.+ ++..|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 56678999999999999875 68999999998776666677889999999999999999999999875 24579999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC--cEEcCCCCCCEEEc-CCCcEEEEeeccce
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQS--FIHRDLKPSNILLG-DDMRAKVADFGLVR 744 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~--ivHrDlkp~NIll~-~~~~~kl~DFG~a~ 744 (779)
|||++|+|.+++.+.. .+++..+..|+.||+.||+|||+ ++ ||||||||+|||++ .++.+||+|||+|+
T Consensus 109 Ey~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~ylH~---~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~ 180 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp ECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred eCCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence 9999999999996543 58999999999999999999996 55 99999999999998 47999999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... .....+||+.|||||++.+.
T Consensus 181 ~~~~~----~~~~~~GTp~YmAPE~~~~~ 205 (290)
T 3fpq_A 181 LKRAS----FAKAVIGTPEFMAPEMYEEK 205 (290)
T ss_dssp GCCTT----SBEESCSSCCCCCGGGGGTC
T ss_pred eCCCC----ccCCcccCccccCHHHcCCC
Confidence 64332 23456899999999998764
No 17
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.3e-36 Score=311.60 Aligned_cols=176 Identities=28% Similarity=0.454 Sum_probs=139.4
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh-hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE-KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
++|++.+.||+|+||+||+|+.. +++.||+|++.+..... ...+++.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999864 79999999997654332 34567999999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+ +|+|.+++.++. .+++.++..++.||+.||+|||+ ++|+||||||+|||+++++++||+|||+|+...
T Consensus 93 Ey~-~g~L~~~l~~~~-----~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~ 163 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT 163 (275)
T ss_dssp ECC-CEEHHHHHHHSC-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCSSCC----
T ss_pred eCC-CCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeecCCCeecC
Confidence 999 679999986542 58999999999999999999997 899999999999999999999999999998765
Q ss_pred CCCCcccccccccCCcccccccccccCCCC
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
... .....+||+.|||||++.+...++
T Consensus 164 ~~~---~~~~~~GT~~Y~APE~~~~~~y~~ 190 (275)
T 3hyh_A 164 DGN---FLKTSCGSPNYAAPEVISGKLYAG 190 (275)
T ss_dssp --------------CTTSCHHHHSSSSCCC
T ss_pred CCC---ccCCeeECcccCChhhhcCCCCCC
Confidence 432 224468999999999998876543
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-35 Score=341.07 Aligned_cols=376 Identities=17% Similarity=0.171 Sum_probs=247.7
Q ss_pred CCcceeeEeCCC------------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEec
Q 004020 53 PCKWKHIQCSPS------------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLF 119 (779)
Q Consensus 53 ~C~w~gv~c~~~------------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l 119 (779)
.|.|.|+ |+.. .++++|+|++|++++..|.+|..+++|++|+|++|++++.+| .|.++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4888887 7632 379999999999999999999999999999999999999887 7999999999999
Q ss_pred CCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecC-CCccCCCCCcccEEEccCCC
Q 004020 120 DDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIP-DFLGGDTIPGLMHLHLAFNF 198 (779)
Q Consensus 120 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~l~~L~~L~L~~N~ 198 (779)
++|+++++++..|.++++|++|+|++|++.+...|..+.++++|+.|++++|.+.+.+| ..+. .+++|++|+|++|+
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA--GLTSLNELEIKALS 159 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETT
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhh--cccccCeeeccCCc
Confidence 99999999999999999999999999999875567889999999999999999555555 5665 78999999999999
Q ss_pred CCCcCCCcccc-------------------------CCcceeeccCCCCCCCCCCch-----------------------
Q 004020 199 LQGPIPLSFGK-------------------------SSIQTLWLNGQKGDSKLNGSV----------------------- 230 (779)
Q Consensus 199 l~~~~p~~~~~-------------------------~~L~~l~l~~n~~~~~~~~~~----------------------- 230 (779)
+++.+|..++. .+|+.|++++|++........
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 99888877754 245556666665544210000
Q ss_pred -----hhh-----------------------------------------------------------cCCCCccEEEeec
Q 004020 231 -----AVI-----------------------------------------------------------QNMTSLTQLWLHG 246 (779)
Q Consensus 231 -----~~~-----------------------------------------------------------~~l~~L~~L~L~~ 246 (779)
..+ ..+++|+.|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 000 0012233333333
Q ss_pred CcccCCCCCC-CCCCCCcEEEccCCccccccCh---hhhCCCCCCEEEccCccccccCC--CCCCCcccccccCCCCccc
Q 004020 247 NSFTGPLPDL-SGLSSLQDFSVRDNQLTGIVPS---SLVNLHSLAVVNLTNNLFQGQTP--KFNSPVRFDMAKGSNSFCL 320 (779)
Q Consensus 247 N~l~~~~~~~-~~l~~L~~L~l~~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~g~~p--~~~~~~~~~~~~~~~~~~~ 320 (779)
|.++..+..+ ..+++|++|++++|++++.+|. .++.+++|++|+|++|++++..+ ..+.. ..++..+
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-------l~~L~~L 392 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT-------LKNLTSL 392 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG-------CTTCCEE
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc-------CCCCCEE
Confidence 3333211122 2456666666666666665532 25566666666666666654321 00000 0000000
Q ss_pred CCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEe
Q 004020 321 DDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLM 400 (779)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~ 400 (779)
....+... ..+ ..+.....+.......+ ....+....+.+|+.|+|++|++++.+ ..+++|++|+
T Consensus 393 ~Ls~N~l~-~lp------~~~~~~~~L~~L~Ls~N----~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~ 457 (549)
T 2z81_A 393 DISRNTFH-PMP------DSCQWPEKMRFLNLSST----GIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELY 457 (549)
T ss_dssp ECTTCCCC-CCC------SCCCCCTTCCEEECTTS----CCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEE
T ss_pred ECCCCCCc-cCC------hhhcccccccEEECCCC----CcccccchhcCCceEEECCCCChhhhc----ccCChhcEEE
Confidence 00000000 000 00000000000000000 011111112347889999999988753 4788999999
Q ss_pred ccCccccccCCccCCCCCCCCceeccCCcccccCCC----CCCcceeeeCCCCCCCCCC
Q 004020 401 LSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN----FRQNVIVKTDGNPDIGKDS 455 (779)
Q Consensus 401 Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~----~~~~~~~~~~~n~~~~~~~ 455 (779)
|++|+|+ .+|. ...+++|++|||++|++++.+|. +.....+.+.+|++.|..+
T Consensus 458 Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 458 ISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999998 7886 46788999999999999988875 3344567888898887654
No 19
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=326.85 Aligned_cols=173 Identities=25% Similarity=0.411 Sum_probs=151.9
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.+.|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+++|++++|||||+++++|.+++..|+||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVm 227 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK--QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 227 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT--CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccc--hhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEE
Confidence 467999999999999999999875 69999999997543 223356889999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
|||++|+|.+++... .+++.++..|+.||+.||+|||+ ++||||||||+|||++.+|++||+|||+|+.+.
T Consensus 228 Ey~~gG~L~~~i~~~------~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~ 298 (423)
T 4fie_A 228 EFLEGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS 298 (423)
T ss_dssp ECCTTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECC
T ss_pred eCCCCCcHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccceECC
Confidence 999999999998542 48999999999999999999997 899999999999999999999999999999875
Q ss_pred CCCCcccccccccCCcccccccccccC
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
.... .....+||+.|||||++.+..
T Consensus 299 ~~~~--~~~~~~GTp~YmAPEvl~~~~ 323 (423)
T 4fie_A 299 KEVP--RRKSLVGTPYWMAPELISRLP 323 (423)
T ss_dssp SSCC--CBCCCEECTTTCCHHHHTTCC
T ss_pred CCCc--cccccccCcCcCCHHHHCCCC
Confidence 4322 234568999999999987653
No 20
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=3.1e-37 Score=320.57 Aligned_cols=175 Identities=27% Similarity=0.373 Sum_probs=145.1
Q ss_pred cCCcccceecccccEEEEEEEEc----CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH----DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
++|++.+.||+|+||+||+|+.. +++.||+|++++.........++.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999763 47899999997655444444578899999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
|||||+||+|.+++.+.. .+++.++..++.||+.||+|||+ ++|+||||||+|||++.+|++||+|||+|+.
T Consensus 104 vmEy~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~ 175 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-----MFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKE 175 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred EEEcCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEeccccccee
Confidence 999999999999996543 58999999999999999999997 8999999999999999999999999999986
Q ss_pred cCCCCCcccccccccCCcccccccccccC
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
..... ......+||+.|||||++.+..
T Consensus 176 ~~~~~--~~~~~~~GT~~YmAPE~~~~~~ 202 (304)
T 3ubd_A 176 SIDHE--KKAYSFCGTVEYMAPEVVNRRG 202 (304)
T ss_dssp -------CCCCSCCCCGGGCCHHHHHTSC
T ss_pred ccCCC--ccccccccCcccCCHHHhccCC
Confidence 54432 1234568999999999997654
No 21
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.2e-36 Score=318.33 Aligned_cols=181 Identities=25% Similarity=0.403 Sum_probs=151.5
Q ss_pred cCCcccceecccccEEEEEEEEc------CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
.++++.+.||+|+||.||+|++. +++.||||+++... .....++|.+|+.++++++|||||+++++|.+++..
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~ 104 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL 104 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C-CC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc-ChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEE
Confidence 34667889999999999999863 46889999997543 334457899999999999999999999999999999
Q ss_pred EEEEEecCCCChhhHhhhcccCC-----------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEG-----------LKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD 732 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~-----------~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~ 732 (779)
++|||||++|+|.+++..+.... ...+++.++++|+.||++||+|||+ ++||||||||+|||++++
T Consensus 105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~ 181 (308)
T 4gt4_A 105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDK 181 (308)
T ss_dssp EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGG
T ss_pred EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCccccceEECCC
Confidence 99999999999999997543211 2358999999999999999999997 899999999999999999
Q ss_pred CcEEEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 733 MRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 733 ~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
+++||+|||+|+..............+||+.|||||++.+..
T Consensus 182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~ 223 (308)
T 4gt4_A 182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGK 223 (308)
T ss_dssp GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCC
T ss_pred CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCC
Confidence 999999999998765433333344567999999999987653
No 22
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=4.5e-36 Score=313.33 Aligned_cols=180 Identities=31% Similarity=0.463 Sum_probs=141.1
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC------
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN------ 661 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------ 661 (779)
.++|++.+.||+|+||.||+|+.. +++.||||+++... .+...+++.+|++++++++|||||+++++|.+.+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~ 82 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ 82 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence 456999999999999999999875 78999999997543 3445578999999999999999999999987654
Q ss_pred ------eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcE
Q 004020 662 ------ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRA 735 (779)
Q Consensus 662 ------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~ 735 (779)
..|+|||||++|+|.+++..+.. ....++..++.|+.||++||+|||+ ++||||||||+|||++.++.+
T Consensus 83 ~~~~~~~l~ivmE~~~gg~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl~~~~~v 157 (299)
T 4g31_A 83 PSSPKVYLYIQMQLCRKENLKDWMNGRCT--IEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVV 157 (299)
T ss_dssp ----CEEEEEEEECCCSCCHHHHHHTCCS--GGGSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCE
T ss_pred ccCCCcEEEEEEecCCCCcHHHHHHhcCC--CChhHHHHHHHHHHHHHHHHHHHHH---CcCccccCcHHHeEECCCCcE
Confidence 36899999999999999965432 2235677788999999999999997 899999999999999999999
Q ss_pred EEEeeccceecCCCCCcc----------cccccccCCcccccccccccC
Q 004020 736 KVADFGLVRLAPDNGKHS----------IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 736 kl~DFG~a~~~~~~~~~~----------~~~~~~gt~~y~APE~l~~~~ 774 (779)
||+|||+|+......... ..+..+||+.|||||++.+..
T Consensus 158 Kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~ 206 (299)
T 4g31_A 158 KVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNS 206 (299)
T ss_dssp EECCCCCC--------------------------CCCTTSCHHHHTTCC
T ss_pred EEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCC
Confidence 999999998765432211 123457999999999998753
No 23
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=4.3e-36 Score=315.70 Aligned_cols=170 Identities=26% Similarity=0.361 Sum_probs=144.3
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
+.|+..++||+|+||.||+|+.. +|+.||||+++.... ..+|+.++++++|||||++++++.+++..|+|||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 46888899999999999999875 689999999975432 2469999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC-cEEEEeeccceecC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM-RAKVADFGLVRLAP 747 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~-~~kl~DFG~a~~~~ 747 (779)
||++|+|.+++.... .+++..+..|+.||+.||+|||+ ++||||||||+|||++.+| ++||+|||+|+...
T Consensus 131 y~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~ 202 (336)
T 4g3f_A 131 LLEGGSLGQLIKQMG-----CLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQ 202 (336)
T ss_dssp CCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-
T ss_pred ccCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCCeEcc
Confidence 999999999996543 58999999999999999999996 8999999999999999987 69999999999875
Q ss_pred CCCCcc---cccccccCCcccccccccccC
Q 004020 748 DNGKHS---IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 748 ~~~~~~---~~~~~~gt~~y~APE~l~~~~ 774 (779)
..+... .....+||+.|||||++.+..
T Consensus 203 ~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~ 232 (336)
T 4g3f_A 203 PDGLGKSLLTGDYIPGTETHMAPEVVMGKP 232 (336)
T ss_dssp -----------CCCCCCGGGCCHHHHTTCC
T ss_pred CCCcccceecCCccccCccccCHHHHCCCC
Confidence 432211 123357999999999998753
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-34 Score=334.65 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=197.9
Q ss_pred ceeeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCC
Q 004020 56 WKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNF 124 (779)
Q Consensus 56 w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l 124 (779)
+..+.|+.. ..++.|+|++|++++..|.+|..+++|++|+|++|++++..| .|.++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 445778642 479999999999999889999999999999999999998877 799999999999999999
Q ss_pred CCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCC
Q 004020 125 TSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIP 204 (779)
Q Consensus 125 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p 204 (779)
+.+++..|.++++|++|+|++|++.+ ..+..+.++++|++|++++|.+++..+..+. .+++|++|+|++|++++..|
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTC--CCTTCCEEECCSSCCCEECH
T ss_pred cccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCccccc--CCcccCEEEcccCcccccCh
Confidence 99999999999999999999999986 4578899999999999999999974433333 48899999999999998777
Q ss_pred Ccccc-CCcc--eeeccCCCCCCCCCCchh----------------------------------------------hhcC
Q 004020 205 LSFGK-SSIQ--TLWLNGQKGDSKLNGSVA----------------------------------------------VIQN 235 (779)
Q Consensus 205 ~~~~~-~~L~--~l~l~~n~~~~~~~~~~~----------------------------------------------~~~~ 235 (779)
..++. .+|+ .|++++|.+....+.... .+..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 77765 4566 788888877654332211 0111
Q ss_pred CC--CccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 236 MT--SLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 236 l~--~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
+. +|+.|++++|.+++.++. +..+++|++|++++|+++ .+|..+..+++|++|+|++|++++..|..
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh
Confidence 11 678888888888887775 788888888888888887 67888888888888888888888776643
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-34 Score=330.96 Aligned_cols=351 Identities=19% Similarity=0.184 Sum_probs=233.3
Q ss_pred ceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccC
Q 004020 56 WKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKG 134 (779)
Q Consensus 56 w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 134 (779)
+.+|...-..++++|+|++|++++..|.+|..+++|++|+|++|+|++.+| .|.++++|++|+|++|+++.+|.. .
T Consensus 43 L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~ 119 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---P 119 (562)
T ss_dssp CCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---C
T ss_pred CccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---c
Confidence 333333323689999999999998888899999999999999999999877 799999999999999999999877 7
Q ss_pred CCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcc--cEEEccCCCC--CCcCCCccccC
Q 004020 135 LTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGL--MHLHLAFNFL--QGPIPLSFGKS 210 (779)
Q Consensus 135 l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L--~~L~L~~N~l--~~~~p~~~~~~ 210 (779)
+++|++|+|++|++.+..+|..|.++++|++|++++|.+++. .+. .+++| ++|+|++|++ ++..|..+...
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~--~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL--PVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTG--GGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chh--hhhhceeeEEEeecccccccccCccccccc
Confidence 999999999999998755678999999999999999999752 232 34555 8999999988 77777666541
Q ss_pred ---------------------------CcceeeccCCCCCC-CCCCch---------------------------hhhcC
Q 004020 211 ---------------------------SIQTLWLNGQKGDS-KLNGSV---------------------------AVIQN 235 (779)
Q Consensus 211 ---------------------------~L~~l~l~~n~~~~-~~~~~~---------------------------~~~~~ 235 (779)
+|+.+++++|+... .+.+.+ .....
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 22233333221000 000000 00001
Q ss_pred CCCccEEEeecCcccCCCCC-C-----------------------------------------------------CCCCC
Q 004020 236 MTSLTQLWLHGNSFTGPLPD-L-----------------------------------------------------SGLSS 261 (779)
Q Consensus 236 l~~L~~L~L~~N~l~~~~~~-~-----------------------------------------------------~~l~~ 261 (779)
.++|++|++++|.++|.+|. + ..+++
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 354 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence 12444455555555443332 1 45667
Q ss_pred CcEEEccCCccccccChhhhCCCCCCEEEccCccccccC--CCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcc
Q 004020 262 LQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQT--PKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVK 339 (779)
Q Consensus 262 L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (779)
|++|++++|++++.+|..+.++++|+.|+|++|++++.. |..+.... +...+....+....
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-------~L~~L~l~~N~l~~---------- 417 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-------SLETLDVSLNSLNS---------- 417 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-------TCCEEECTTSCCBS----------
T ss_pred ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-------CCCEEECCCCcCCC----------
Confidence 777777777777666777777777777777777776532 22111100 00000000000000
Q ss_pred cCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCC
Q 004020 340 SVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPS 419 (779)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 419 (779)
......+...++|+.|+|++|++++.+|..+. ++|++|+|++|+|+ .+|..+..+++
T Consensus 418 --------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~ 474 (562)
T 3a79_B 418 --------------------HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474 (562)
T ss_dssp --------------------CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred --------------------ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence 00000122345788888999888888777665 68888999999888 78888888888
Q ss_pred CCceeccCCcccccCCC--C---CCcceeeeCCCCCCCCCC
Q 004020 420 LEMLDVSNNHLFGKVPN--F---RQNVIVKTDGNPDIGKDS 455 (779)
Q Consensus 420 L~~L~Ls~N~l~g~iP~--~---~~~~~~~~~~n~~~~~~~ 455 (779)
|++|||++|+|++ +|. + .....+.+.+|++.|..+
T Consensus 475 L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 475 LQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9999999998884 443 2 233456778888877643
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.5e-35 Score=325.29 Aligned_cols=310 Identities=19% Similarity=0.233 Sum_probs=252.1
Q ss_pred CcEEEEEecCCCccccC-CccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCC--CcccccCCCCccE
Q 004020 65 NRVTRIQIGGQNIEGTL-PKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSV--PSDFFKGLTSLQT 140 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~ 140 (779)
.+++.|+|++|.+.+.+ +..|..+++|++|+|++|++++.+| .|.++++|++|+|++|++++. ....|..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 57999999999998666 4679999999999999999998877 899999999999999999983 3445999999999
Q ss_pred EEcccCCCCCCCCccc-ccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccc---------cC
Q 004020 141 ISLDYNSFDSWVIPES-LKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFG---------KS 210 (779)
Q Consensus 141 L~Ls~N~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~---------~~ 210 (779)
|+|++|++.+ ..|.. +.++++|++|++++|.+++..|..+......+|+.|++++|.+++..+..++ ..
T Consensus 134 L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 134 LVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EECCCCccCc-cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 9999999987 45554 8999999999999999999888877632225666666666666654443322 13
Q ss_pred CcceeeccCCCCCCCCCCc----------------------------------hhhhc--CCCCccEEEeecCcccCCCC
Q 004020 211 SIQTLWLNGQKGDSKLNGS----------------------------------VAVIQ--NMTSLTQLWLHGNSFTGPLP 254 (779)
Q Consensus 211 ~L~~l~l~~n~~~~~~~~~----------------------------------~~~~~--~l~~L~~L~L~~N~l~~~~~ 254 (779)
+|+.|++++|++....... ...+. ..++|+.|+|++|.+++.+|
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 4566666665543211100 01111 23689999999999999888
Q ss_pred C-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchh
Q 004020 255 D-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNV 333 (779)
Q Consensus 255 ~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (779)
. +..+++|++|++++|++++..|..|..+++|++|+|++|++++.+|..+.
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------------- 344 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE---------------------------- 344 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT----------------------------
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc----------------------------
Confidence 5 89999999999999999999999999999999999999999877664221
Q ss_pred hhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCcc
Q 004020 334 LLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKE 413 (779)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~ 413 (779)
..++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..
T Consensus 345 ----------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 345 ----------------------------------NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp ----------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ----------------------------------CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH
Confidence 2347999999999999999999999999999999999999766677
Q ss_pred CCCCCCCCceeccCCcccccCCCC
Q 004020 414 LTTLPSLEMLDVSNNHLFGKVPNF 437 (779)
Q Consensus 414 l~~l~~L~~L~Ls~N~l~g~iP~~ 437 (779)
+..+++|++|+|++|++++.+|..
T Consensus 391 ~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hccCCcccEEEccCCCcccCCCcc
Confidence 899999999999999999999963
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.3e-34 Score=333.86 Aligned_cols=363 Identities=18% Similarity=0.203 Sum_probs=274.0
Q ss_pred CCCcce----eeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccE
Q 004020 52 DPCKWK----HIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQE 116 (779)
Q Consensus 52 ~~C~w~----gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~ 116 (779)
++|.+. .|.|+.. ..+++|||++|+|++..+.+|..+++|++|+|++|+|+++++ +|.+|++|++
T Consensus 25 ~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 25 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 104 (635)
T ss_dssp CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence 456543 5778742 369999999999998888899999999999999999999888 7999999999
Q ss_pred EecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEee-cCCCccCCCCCcccEEEcc
Q 004020 117 VLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGT-IPDFLGGDTIPGLMHLHLA 195 (779)
Q Consensus 117 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~l~~L~~L~L~ 195 (779)
|+|++|+|+.+++++|.++++|++|+|++|++++ ..+..|+++++|++|++++|.+++. +|..++ .+++|++|+|+
T Consensus 105 L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~L~ 181 (635)
T 4g8a_A 105 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLS 181 (635)
T ss_dssp EECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECC
T ss_pred EEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhc--cchhhhhhccc
Confidence 9999999999999999999999999999999987 5667899999999999999999864 567775 78999999999
Q ss_pred CCCCCCcCCCcccc-C---------------------------CcceeeccCC---------------------------
Q 004020 196 FNFLQGPIPLSFGK-S---------------------------SIQTLWLNGQ--------------------------- 220 (779)
Q Consensus 196 ~N~l~~~~p~~~~~-~---------------------------~L~~l~l~~n--------------------------- 220 (779)
+|+|++..|..+.. . .+..+.+.+|
T Consensus 182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred CccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 99998776655432 0 0111111111
Q ss_pred -----------------------------------------------------------------------------CCC
Q 004020 221 -----------------------------------------------------------------------------KGD 223 (779)
Q Consensus 221 -----------------------------------------------------------------------------~~~ 223 (779)
.+.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 341 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc
Confidence 000
Q ss_pred CCCCC----------------chhhhcCCCCccEEEeecCcccC--------------------------CCCCCCCCCC
Q 004020 224 SKLNG----------------SVAVIQNMTSLTQLWLHGNSFTG--------------------------PLPDLSGLSS 261 (779)
Q Consensus 224 ~~~~~----------------~~~~~~~l~~L~~L~L~~N~l~~--------------------------~~~~~~~l~~ 261 (779)
..... .......+++|+.|++++|.+.. ..+.+..+++
T Consensus 342 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~ 421 (635)
T 4g8a_A 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ 421 (635)
T ss_dssp SCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred CcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence 00000 00011235667777777776642 2234667899
Q ss_pred CcEEEccCCccccccC-hhhhCCCCCCEEEccCccccccCCCCCCCcc-cccccCCCCcccCCCCcccCccchhhhhhcc
Q 004020 262 LQDFSVRDNQLTGIVP-SSLVNLHSLAVVNLTNNLFQGQTPKFNSPVR-FDMAKGSNSFCLDDAGVACDGRVNVLLSIVK 339 (779)
Q Consensus 262 L~~L~l~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (779)
|+.+++..|.+....+ ..+..+++|+.+++++|.+++..|..+.... +.....++ +...
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~--------N~~~----------- 482 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG--------NSFQ----------- 482 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT--------CEEG-----------
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhh--------cccc-----------
Confidence 9999999998876655 5678899999999999999988886544322 10000000 0000
Q ss_pred cCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCC
Q 004020 340 SVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPS 419 (779)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 419 (779)
.. .....+...++|++|+|++|+|++..|..|+++++|++|+|++|+|++..|..+..+++
T Consensus 483 ---------~~----------~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 483 ---------EN----------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp ---------GG----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ---------cc----------cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 00 00011233458999999999999999999999999999999999999888999999999
Q ss_pred CCceeccCCcccccCCCC-----CCcceeeeCCCCCCCCCC
Q 004020 420 LEMLDVSNNHLFGKVPNF-----RQNVIVKTDGNPDIGKDS 455 (779)
Q Consensus 420 L~~L~Ls~N~l~g~iP~~-----~~~~~~~~~~n~~~~~~~ 455 (779)
|++|||++|+|++.+|.. .....+.+.+||+.|.+.
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999863 234467889999999754
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=324.78 Aligned_cols=317 Identities=16% Similarity=0.167 Sum_probs=276.3
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccC
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYN 146 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 146 (779)
+.++.++++++ .+|..+. ++|++|+|++|+|++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 47899999998 7787664 589999999999999887 8999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCCCC
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGDSK 225 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~~~ 225 (779)
++.. ..+..|.++++|++|++++|.+++..|..+. .+++|++|+|++|++++..|..+.. .+|+.|++++|++...
T Consensus 91 ~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 91 RLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred cCCc-cCcccccCCCCCCEEECCCCccccCChhHcc--ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 9986 4556789999999999999999999898886 7999999999999999888888876 6799999999987653
Q ss_pred CCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCC
Q 004020 226 LNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFN 304 (779)
Q Consensus 226 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 304 (779)
....+..+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+.+.+|..+....+|+.|+|++|++++..+..
T Consensus 168 ---~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~- 243 (477)
T 2id5_A 168 ---PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA- 243 (477)
T ss_dssp ---CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH-
T ss_pred ---ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH-
Confidence 23457788999999999999998777 4888999999999999888888888888889999999999987533211
Q ss_pred CCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccc
Q 004020 305 SPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSG 384 (779)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g 384 (779)
+...++|+.|+|++|.+++
T Consensus 244 -------------------------------------------------------------~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 244 -------------------------------------------------------------VRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp -------------------------------------------------------------HTTCTTCCEEECCSSCCCE
T ss_pred -------------------------------------------------------------hcCccccCeeECCCCcCCc
Confidence 1223489999999999999
Q ss_pred cccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCC----CCCcceeeeCCCCCCCCCC
Q 004020 385 TISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN----FRQNVIVKTDGNPDIGKDS 455 (779)
Q Consensus 385 ~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~----~~~~~~~~~~~n~~~~~~~ 455 (779)
..+..|..+++|+.|+|++|++++..|..+..+++|++|||++|+|++..|. +.....+.+.+|++.|...
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 8888999999999999999999999999999999999999999999987664 2334578889999988754
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=328.46 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=97.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
.++++|+|++|++++..|..|..+++|++|+|++|++++.+| .|.++++|++|+|++|+++.+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence 578888888888887777788888888888888888888766 788888888888888888887765 7888888888
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcc--cEEEccCCCC
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGL--MHLHLAFNFL 199 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L--~~L~L~~N~l 199 (779)
++|++.+..+|..|+++++|++|++++|.+++. .+. .+++| ++|+|++|++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~--~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVL--PIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGG--GGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchh---hcc--ccccceeeEEEeecccc
Confidence 888887655778888888888888888877641 222 34444 5555555555
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.8e-34 Score=334.89 Aligned_cols=372 Identities=19% Similarity=0.168 Sum_probs=264.7
Q ss_pred CcceeeEeCC----------CCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCC
Q 004020 54 CKWKHIQCSP----------SNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDN 122 (779)
Q Consensus 54 C~w~gv~c~~----------~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N 122 (779)
|.++.|.|+. ..+++.|+|++|++++..+..|..+++|++|+|++|++++.+| .|.++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 4455566653 2479999999999998888889999999999999999999887 6899999999999999
Q ss_pred CCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCc
Q 004020 123 NFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGP 202 (779)
Q Consensus 123 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~ 202 (779)
+++.+++..|.++++|++|+|++|++.+ ..|..|.++++|++|++++|.+++..|..++ .+++|++|+|++|++++.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQV--QLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSS--CCTTCCEEECCSSCCCCB
T ss_pred ccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhc--ccccCCEEEccCCccccc
Confidence 9999999999999999999999999976 5668899999999999999999988888886 799999999999999987
Q ss_pred CCCcccc---CCcceeeccCCCCCCCCCCchhhhcC------------------------CCCccEEEeecCcccCCCCC
Q 004020 203 IPLSFGK---SSIQTLWLNGQKGDSKLNGSVAVIQN------------------------MTSLTQLWLHGNSFTGPLPD 255 (779)
Q Consensus 203 ~p~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~~------------------------l~~L~~L~L~~N~l~~~~~~ 255 (779)
.+..++. .+|+.|++++|.+....+.....+.+ .++|+.|+|++|.+++..|.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 7776543 67999999999887765554332222 26788899999999887774
Q ss_pred -CCCCC--CCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCc-ccccccCCCCcc------------
Q 004020 256 -LSGLS--SLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPV-RFDMAKGSNSFC------------ 319 (779)
Q Consensus 256 -~~~l~--~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~-~~~~~~~~~~~~------------ 319 (779)
+..++ +|++|++++|++++..|..|..+++|++|+|++|++++.+|..+... .+......+...
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 66664 49999999999998888889999999999999999998887654432 111111111000
Q ss_pred -------------cCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccc-----cCCCCCeEEEEccCcc
Q 004020 320 -------------LDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVS-----CDAGGNITVVNLKNLG 381 (779)
Q Consensus 320 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~Ls~n~ 381 (779)
+....+............+..+ .......+.. ....+. .-...+|+.|+|++|+
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------~~L~Ls~n~~--~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL------KYLSLSNSFT--SLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC------CEEECTTCBS--CCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCC------cEEECCCCch--hhhhcchhhhcccccCcCceEECCCCC
Confidence 0000000000000000000000 0000000000 000000 0011357777777777
Q ss_pred ccccccccccccccCCeEeccCccccccCC-ccCCCCCCCCceeccCCcccccCCC
Q 004020 382 LSGTISSNFSRLTSLRQLMLSGNELTGTIP-KELTTLPSLEMLDVSNNHLFGKVPN 436 (779)
Q Consensus 382 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l~g~iP~ 436 (779)
+++..|..|..+++|+.|+|++|++++.+| ..+..+++|++|+|++|++++..|.
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 448 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT
T ss_pred CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh
Confidence 777777777777777777777777777665 5677777777777777777665543
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.9e-34 Score=338.25 Aligned_cols=356 Identities=18% Similarity=0.195 Sum_probs=273.6
Q ss_pred CcceeeEeC--CCCcEEEEEecCCCccc-----------------cCCcccc--CCCCCcEEEcccCccccCCC-CCCCC
Q 004020 54 CKWKHIQCS--PSNRVTRIQIGGQNIEG-----------------TLPKELN--SLSSLTVLEVMKNKLTGQIP-SLSGL 111 (779)
Q Consensus 54 C~w~gv~c~--~~~~v~~l~l~~~~l~~-----------------~~p~~l~--~l~~L~~L~Ls~N~l~~~~~-~~~~l 111 (779)
|...|+.-. .-.+++.|+|++|+++| .+|+.++ ++++|++|+|++|++.+.+| .|.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 455565421 23589999999999998 4999988 99999999999999999888 79999
Q ss_pred CCccEEecCCCC-CCC--CCcc------cccCCCCccEEEcccCCCCCCCCcc--cccCCCCCceEeccCceeEeecCCC
Q 004020 112 SSLQEVLFDDNN-FTS--VPSD------FFKGLTSLQTISLDYNSFDSWVIPE--SLKDATGLQRFSANGANITGTIPDF 180 (779)
Q Consensus 112 ~~L~~L~l~~N~-l~~--~~~~------~~~~l~~L~~L~Ls~N~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~ 180 (779)
++|++|+|++|+ +++ +|.. .+..+++|++|+|++|++. .+|. .+.++++|+.|+|++|+++ .+| .
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 999999999998 987 4442 2344569999999999998 4788 9999999999999999999 888 6
Q ss_pred ccCCCCCcccEEEccCCCCCCcCCCcccc-CC-cceeeccCCCCCCCCCCchhhhcCCC--CccEEEeecCcccCCCCCC
Q 004020 181 LGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SS-IQTLWLNGQKGDSKLNGSVAVIQNMT--SLTQLWLHGNSFTGPLPDL 256 (779)
Q Consensus 181 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~-L~~l~l~~n~~~~~~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~ 256 (779)
++ .+++|++|+|++|+++ .+|..+.. .+ |+.|++++|.+.. ++ ..+..++ +|+.|+|++|++++.+|.+
T Consensus 591 ~~--~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp---~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 591 FG--TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IP---NIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp CC--TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CC---SCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred hc--CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cc---hhhhccccCCCCEEECcCCcCCCccccc
Confidence 65 7999999999999999 89988877 56 9999999999873 33 2334444 4999999999999988754
Q ss_pred C------CCCCCcEEEccCCccccccChhh-hCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCc
Q 004020 257 S------GLSSLQDFSVRDNQLTGIVPSSL-VNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDG 329 (779)
Q Consensus 257 ~------~l~~L~~L~l~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (779)
. .+++|+.|+|++|+++ .+|..+ ..+++|+.|+|++|+|+..++..+....-......++..+....+...
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred hhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-
Confidence 3 4569999999999999 566655 589999999999999994433333221000000001111111000000
Q ss_pred cchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccC------
Q 004020 330 RVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSG------ 403 (779)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~------ 403 (779)
.-.........++|+.|+|++|++++ +|..++++++|+.|+|++
T Consensus 742 -----------------------------~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 742 -----------------------------SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp -----------------------------CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred -----------------------------cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 00000001245689999999999998 899999999999999976
Q ss_pred ccccccCCccCCCCCCCCceeccCCcccccCCC--CCCcceeeeCCCCCCCC
Q 004020 404 NELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN--FRQNVIVKTDGNPDIGK 453 (779)
Q Consensus 404 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~--~~~~~~~~~~~n~~~~~ 453 (779)
|++.+.+|..+..+++|+.|+|++|+| +.||. +.....+.+.+|+...-
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISI 842 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCEE
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCcc
Confidence 889999999999999999999999999 88887 23344567777775543
No 32
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=7e-35 Score=305.90 Aligned_cols=175 Identities=27% Similarity=0.388 Sum_probs=141.1
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC----eEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN----ERL 664 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~ 664 (779)
.++|.+.+.||+|+||.||+|++ +|+.||||++.... .....+.+|+..+.+++|||||++++++.+++ ..|
T Consensus 2 ar~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~ 77 (303)
T 3hmm_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred CcEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc---hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence 35688899999999999999987 58999999986532 11223345666667889999999999998654 579
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcC-----CCCCcEEcCCCCCCEEEcCCCcEEEEe
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGL-----AHQSFIHRDLKPSNILLGDDMRAKVAD 739 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-----~~~~ivHrDlkp~NIll~~~~~~kl~D 739 (779)
+|||||++|+|.++++.. .+++..+.+++.|+++||+|||+. ++.+||||||||+|||++.++++||+|
T Consensus 78 lV~Ey~~~gsL~~~l~~~------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~D 151 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 151 (303)
T ss_dssp EEEECCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred EEecCCCCCcHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEe
Confidence 999999999999999643 478999999999999999999963 124899999999999999999999999
Q ss_pred eccceecCCCCCcc--cccccccCCccccccccccc
Q 004020 740 FGLVRLAPDNGKHS--IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 740 FG~a~~~~~~~~~~--~~~~~~gt~~y~APE~l~~~ 773 (779)
||+|+......... .....+||+.|||||++.+.
T Consensus 152 FGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~ 187 (303)
T 3hmm_A 152 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDS 187 (303)
T ss_dssp CTTCEEEETTTTEESCC-----CCGGGCCHHHHTTC
T ss_pred CCCCccccCCCCceeeecccccccccccCHHHhccc
Confidence 99998775543221 12345799999999999765
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=326.40 Aligned_cols=372 Identities=16% Similarity=0.139 Sum_probs=206.5
Q ss_pred cEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
+++.|+|++|++++..+.+|..+++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 56666666666666666666666666666666666666555 56666666666666666666666666666666666666
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEe-ecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCc----ceeecc
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITG-TIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSI----QTLWLN 218 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L----~~l~l~ 218 (779)
+|++.. ..+..++++++|++|++++|.+++ .+|..++ .+++|++|++++|++++..|..++. .+| ..|+++
T Consensus 109 ~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccc-CCCccccccccccEEecCCCccceecChhhhc--ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 666654 223346666666666666666654 3455554 4566666666666665544444432 222 333444
Q ss_pred CCCCCCCCC-----------------------------------------------------------------------
Q 004020 219 GQKGDSKLN----------------------------------------------------------------------- 227 (779)
Q Consensus 219 ~n~~~~~~~----------------------------------------------------------------------- 227 (779)
+|.+.....
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 333221110
Q ss_pred -------CchhhhcCCCCccEEEeecCcccCCCCCCC------------------------------------------C
Q 004020 228 -------GSVAVIQNMTSLTQLWLHGNSFTGPLPDLS------------------------------------------G 258 (779)
Q Consensus 228 -------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------------------------~ 258 (779)
..+..+..+++|+.|++++|.+++.++.+. .
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccccc
Confidence 011234455667777777766664333333 3
Q ss_pred CCCCcEEEccCCcccccc--ChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccch-hhh
Q 004020 259 LSSLQDFSVRDNQLTGIV--PSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVN-VLL 335 (779)
Q Consensus 259 l~~L~~L~l~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 335 (779)
+++|++|++++|++++.. |..+..+++|++|+|++|++++..+.+.....+ ..+....+....... ...
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTC--------CEEECTTSEEESCTTSCTT
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCC--------CEEEccCCccccccchhhh
Confidence 445555555555555332 455555556666666666555544321111111 011110000000000 000
Q ss_pred hhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcccc-ccccccccccccCCeEeccCccccccCCccC
Q 004020 336 SIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLS-GTISSNFSRLTSLRQLMLSGNELTGTIPKEL 414 (779)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l 414 (779)
.....+ .......+.-. ......+...++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++..|..+
T Consensus 418 ~~l~~L------~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 418 LSLRNL------IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp TTCTTC------CEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred hcCCCC------CEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 000000 00000000000 000112234567888888888887 6788888888889999999998888888888
Q ss_pred CCCCCCCceeccCCcccccCCC-C---CCcceeeeCCCCCCCCCC
Q 004020 415 TTLPSLEMLDVSNNHLFGKVPN-F---RQNVIVKTDGNPDIGKDS 455 (779)
Q Consensus 415 ~~l~~L~~L~Ls~N~l~g~iP~-~---~~~~~~~~~~n~~~~~~~ 455 (779)
..+++|++|+|++|++++.+|. + .....+.+.+|++.|..+
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 8888899999998888887775 2 334467778888877654
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-34 Score=330.73 Aligned_cols=308 Identities=16% Similarity=0.140 Sum_probs=214.7
Q ss_pred cEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.++.++++++.+....+..|..+++|++|+|++|.|++.++ .|.++++|++|+|++|.++++++..|.++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 57889999999986666668899999999999999999887 89999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDS 224 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~ 224 (779)
+|.|.+ ..+..|.++++|++|+|++|.+++..|..++ .+++|++|+|++|.+++..+..+ ..|+.|++++|.+..
T Consensus 132 ~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~l--~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 132 RNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLI--PSLFHANVSYNLLST 206 (597)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSCCSBCCGGGC--TTCSEEECCSSCCSE
T ss_pred CCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCCCCCcChhhh--hhhhhhhcccCcccc
Confidence 999986 4556679999999999999999998888886 79999999999999997533332 467888888776653
Q ss_pred CCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCC
Q 004020 225 KLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFN 304 (779)
Q Consensus 225 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 304 (779)
. ...++|+.|++++|.++..++.+. ++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..+
T Consensus 207 l--------~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 207 L--------AIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp E--------ECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred c--------cCCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 2 234566666666666665444322 466666666666664 3556666666666666666666555422
Q ss_pred CCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccc
Q 004020 305 SPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSG 384 (779)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g 384 (779)
.... ++..+....+...+ + .......++|+.|+|++|.++
T Consensus 275 ~~l~-------~L~~L~Ls~N~l~~-----------------l---------------~~~~~~l~~L~~L~Ls~N~l~- 314 (597)
T 3oja_B 275 VKMQ-------RLERLYISNNRLVA-----------------L---------------NLYGQPIPTLKVLDLSHNHLL- 314 (597)
T ss_dssp TTCS-------SCCEEECTTSCCCE-----------------E---------------ECSSSCCTTCCEEECCSSCCC-
T ss_pred cCcc-------CCCEEECCCCCCCC-----------------C---------------CcccccCCCCcEEECCCCCCC-
Confidence 2110 00000000000000 0 000011235666667766666
Q ss_pred cccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCccccc
Q 004020 385 TISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGK 433 (779)
Q Consensus 385 ~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ 433 (779)
.+|..++.+++|+.|+|++|+|++ +| +..+++|++|+|++|++++.
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence 456666666667777777776663 33 55566666677777766654
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-33 Score=310.19 Aligned_cols=308 Identities=17% Similarity=0.136 Sum_probs=211.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
.+++.|+++++.++...+..|..+++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 468899999999985555557899999999999999998887 8999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCC
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGD 223 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~ 223 (779)
++|++.. ..+..|.++++|++|++++|.+++..|..+. .+++|++|+|++|++++.....+ .+|+.|++++|.+.
T Consensus 125 ~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l--~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 125 ERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLI--PSLFHANVSYNLLS 199 (390)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSSCCSBCCGGGC--TTCSEEECCSSCCS
T ss_pred CCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCCcCCccccccc--cccceeeccccccc
Confidence 9999986 4445579999999999999999988888886 79999999999999996532222 46777888777654
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
.. ...++|+.|++++|.++..+... +++|+.|++++|++++. ..+..+++|+.|+|++|++++.+|..
T Consensus 200 ~~--------~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 200 TL--------AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp EE--------ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cc--------CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 32 23456666666666666543322 35666666666666643 45666666666666666666655432
Q ss_pred CCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcccc
Q 004020 304 NSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLS 383 (779)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 383 (779)
+.... ++..+....+.... ........++|+.|+|++|+++
T Consensus 268 ~~~l~-------~L~~L~L~~n~l~~--------------------------------~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 268 FVKMQ-------RLERLYISNNRLVA--------------------------------LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GTTCS-------SCCEEECCSSCCCE--------------------------------EECSSSCCTTCCEEECCSSCCC
T ss_pred ccccc-------cCCEEECCCCcCcc--------------------------------cCcccCCCCCCCEEECCCCcce
Confidence 21110 00000000000000 0000011235666666666666
Q ss_pred ccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccc
Q 004020 384 GTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFG 432 (779)
Q Consensus 384 g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g 432 (779)
.+|..++.+++|+.|+|++|+|+ .+| +..+++|++|+|++|++++
T Consensus 309 -~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 309 -HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEH
T ss_pred -ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccc
Confidence 35555666666666666666666 333 5556666666666666654
No 36
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.4e-34 Score=308.28 Aligned_cols=190 Identities=26% Similarity=0.403 Sum_probs=157.4
Q ss_pred eHHHHHHhhcCCcccceecccccEEEEEEEEcC------CcEEEEEEecccccChhHHHHHHHHHHHHHcCCC-CccceE
Q 004020 581 SIQVLRNVTNNFSEENVLGRGGFGTVYKGELHD------GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRH-RHLVGL 653 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~~ 653 (779)
.....+...++|++.+.||+|+||.||+|++.. ++.||||++.... .....+++.+|++++++++| ||||++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~-~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc-ChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 334445556889999999999999999997642 3689999997543 34456789999999999975 899999
Q ss_pred eeEEEeC-CeEEEEEEecCCCChhhHhhhcccC-----------CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcC
Q 004020 654 LGYCLDG-NERLLVYEYMPQGTLSRHLFNRKEE-----------GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRD 721 (779)
Q Consensus 654 ~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrD 721 (779)
+++|... +..++|||||++|+|.++++..... ....+++.+++.|+.|||+||+|||+ ++|||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh---CCeecCc
Confidence 9999765 5689999999999999999764421 12358999999999999999999997 8999999
Q ss_pred CCCCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 722 LKPSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 722 lkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
|||+|||+++++.+||+|||+|+..............+||+.|||||++.+..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~ 263 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV 263 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCC
T ss_pred cCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCC
Confidence 99999999999999999999999776544444445567999999999997653
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-33 Score=326.51 Aligned_cols=300 Identities=20% Similarity=0.210 Sum_probs=218.5
Q ss_pred cEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
.++.|++++|++++..+..|..+++|++|+|++|+++..++.+.++++|++|++++|+++.+++..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 68899999999988777788999999999999999986666888899999999999999998888888999999999999
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEeec--CCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCC
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITGTI--PDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGD 223 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~ 223 (779)
|.+.+...+..+..+++|++|++++|.+++.. |..+. .+++|++|+|++|++++..|..++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~--------------- 397 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR--NLSHLQSLNLSYNEPLSLKTEAFK--------------- 397 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT--TCTTCCEEECCSCSCEEECTTTTT---------------
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcc--cCCCCCEEECCCCcCCcCCHHHhc---------------
Confidence 98875445566888999999999999988776 66675 788999999999998877777765
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCC-C-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccC-
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-D-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQT- 300 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~- 300 (779)
.+++|+.|+|++|++++..+ . +..+++|++|++++|.+.+..|..+..+++|+.|+|++|++++..
T Consensus 398 -----------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 398 -----------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp -----------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred -----------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence 46666777777777666544 2 566667777777777776666666666777777777777665421
Q ss_pred CCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCc
Q 004020 301 PKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNL 380 (779)
Q Consensus 301 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 380 (779)
|.. ..+...++|+.|+|++|
T Consensus 467 ~~~------------------------------------------------------------~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 467 QKT------------------------------------------------------------NSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CSS------------------------------------------------------------CGGGGCTTCCEEECTTS
T ss_pred ccc------------------------------------------------------------hhhccCCCccEEECCCC
Confidence 110 00111235666777777
Q ss_pred cccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCC----CCCcceeeeCCCCCCCCC
Q 004020 381 GLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN----FRQNVIVKTDGNPDIGKD 454 (779)
Q Consensus 381 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~----~~~~~~~~~~~n~~~~~~ 454 (779)
++++..|..|+.+++|+.|+|++|++++.+|..+..++.| +|||++|++++.+|. +.....+.+.+||+.|..
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 7776666666667777777777777776666667777667 677777777666554 123345566666666643
No 38
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=311.05 Aligned_cols=180 Identities=23% Similarity=0.400 Sum_probs=152.4
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe------CC
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD------GN 661 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------~~ 661 (779)
.++|++.+.||+|+||.||+|+.. +|+.||||+++.........+.+.+|+++|+.++|||||++++++.. .+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 468999999999999999999875 79999999998766555666788999999999999999999998764 35
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..|+|||||+ |+|.+++... ..+++..+..|+.||+.||+|||+ ++||||||||+|||++.++.+||+|||
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~-----~~l~~~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~DFG 203 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSS-----QPLTLEHVRYFLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFG 203 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSS-----SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEEeCCC-CCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CcCcCCCcCccccccCCCCCEEEeecc
Confidence 7899999996 6899988543 268999999999999999999997 899999999999999999999999999
Q ss_pred cceecCCCCC--cccccccccCCcccccccccccCCCC
Q 004020 742 LVRLAPDNGK--HSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 742 ~a~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+|+.+..... .......+||+.|||||++.+...++
T Consensus 204 la~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~ 241 (398)
T 4b99_A 204 MARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYT 241 (398)
T ss_dssp TCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCC
T ss_pred eeeecccCccccccccccceeChHhcCHHHhcCCCCCC
Confidence 9987643211 12234578999999999998876654
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-33 Score=327.30 Aligned_cols=358 Identities=15% Similarity=0.198 Sum_probs=267.6
Q ss_pred CCcceeeEeC--CCCcEEEEEecCCCcccc-----------------CCcccc--CCCCCcEEEcccCccccCCC-CCCC
Q 004020 53 PCKWKHIQCS--PSNRVTRIQIGGQNIEGT-----------------LPKELN--SLSSLTVLEVMKNKLTGQIP-SLSG 110 (779)
Q Consensus 53 ~C~w~gv~c~--~~~~v~~l~l~~~~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~~-~~~~ 110 (779)
++...|+.-. .-.++++|+|++|.++|. +|+.++ ++++|++|+|++|++.+.+| .|.+
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 3455664321 235899999999999996 999999 99999999999999999888 8999
Q ss_pred CCCccEEecCCCC-CCC-CCcccccCC------CCccEEEcccCCCCCCCCcc--cccCCCCCceEeccCceeEeecCCC
Q 004020 111 LSSLQEVLFDDNN-FTS-VPSDFFKGL------TSLQTISLDYNSFDSWVIPE--SLKDATGLQRFSANGANITGTIPDF 180 (779)
Q Consensus 111 l~~L~~L~l~~N~-l~~-~~~~~~~~l------~~L~~L~Ls~N~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~ 180 (779)
+++|++|+|++|+ +++ ..|..+..+ ++|++|+|++|++. .+|. .+.++++|+.|++++|+++|.+| .
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 9999999999998 987 444446555 99999999999998 4788 99999999999999999999999 7
Q ss_pred ccCCCCCcccEEEccCCCCCCcCCCcccc-CC-cceeeccCCCCCCCCCCchhhhcC--CCCccEEEeecCcccCCCCC-
Q 004020 181 LGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SS-IQTLWLNGQKGDSKLNGSVAVIQN--MTSLTQLWLHGNSFTGPLPD- 255 (779)
Q Consensus 181 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~-L~~l~l~~n~~~~~~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~- 255 (779)
++ .+++|++|+|++|+++ .+|..++. .+ |+.|++++|.+.. ++. .+.. +++|+.|+|++|.+++.+|.
T Consensus 349 ~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 349 FG--SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPN---IFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CE--EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCS---CCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hC--CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cch---hhhhcccCccCEEECcCCcCCCcchhh
Confidence 76 7999999999999999 89988877 56 9999999999883 332 3334 34899999999999998874
Q ss_pred CC-------CCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccC
Q 004020 256 LS-------GLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACD 328 (779)
Q Consensus 256 ~~-------~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (779)
+. .+++|++|++++|+++...+..+..+++|+.|+|++|+++...+..+....-......+...+....+...
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 76 78899999999999995444556679999999999999994444433321000000001111111111111
Q ss_pred ccchhhhh--hcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEc------cCccccccccccccccccCCeEe
Q 004020 329 GRVNVLLS--IVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNL------KNLGLSGTISSNFSRLTSLRQLM 400 (779)
Q Consensus 329 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L------s~n~l~g~~p~~~~~l~~L~~L~ 400 (779)
.++.... .+..+ .......+.... ........++|+.|+| ++|++.+.+|..|+++++|++|+
T Consensus 502 -~lp~~~~~~~l~~L------~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 502 -KLSDDFRATTLPYL------VGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp -BCCGGGSTTTCTTC------CEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred -ccChhhhhccCCCc------CEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 1110000 11111 111111111111 1112334678999999 56889999999999999999999
Q ss_pred ccCccccccCCccCCCCCCCCceeccCCcccc
Q 004020 401 LSGNELTGTIPKELTTLPSLEMLDVSNNHLFG 432 (779)
Q Consensus 401 Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g 432 (779)
|++|+| +.+|..+. ++|++|||++|++..
T Consensus 573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 999999 69999877 799999999998763
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.7e-34 Score=302.18 Aligned_cols=274 Identities=16% Similarity=0.226 Sum_probs=172.8
Q ss_pred CChhHHHHHHHHHHHcC-CCCCC--CCC-----CCCCCcceeeEeCC---------CCcEEEEEecCCCccccCCccccC
Q 004020 25 QSSSDAAAMQALKTSLG-NPASL--GWT-----DPDPCKWKHIQCSP---------SNRVTRIQIGGQNIEGTLPKELNS 87 (779)
Q Consensus 25 ~~~~~~~~l~~~k~~~~-~~~~~--~w~-----~~~~C~w~gv~c~~---------~~~v~~l~l~~~~l~~~~p~~l~~ 87 (779)
+-.+|.+||++||+++. ++..+ +|. ..++|.|.|+.|.. ..+|+.|+|++|+++ .+|+.++.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 44678999999999984 44443 573 45899999999952 357888888888887 77777888
Q ss_pred CCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEe
Q 004020 88 LSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFS 167 (779)
Q Consensus 88 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~ 167 (779)
+++|++|+|++|.++..+..+.++++|++|+|++|+++.+|. .+.++++|++|+|++|++.+ .+|..+...
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~------- 173 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELT-ELPEPLAST------- 173 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCC-CCCSCSEEE-------
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCcc-ccChhHhhc-------
Confidence 888888888888887443467777777777777777775544 36666666666666655543 233322210
Q ss_pred ccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecC
Q 004020 168 ANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGN 247 (779)
Q Consensus 168 l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N 247 (779)
.+++.+. .+++|++|+|++|+++ .+|..++ .+++|++|+|++|
T Consensus 174 --------~~~~~~~--~l~~L~~L~L~~n~l~-~lp~~l~--------------------------~l~~L~~L~L~~N 216 (328)
T 4fcg_A 174 --------DASGEHQ--GLVNLQSLRLEWTGIR-SLPASIA--------------------------NLQNLKSLKIRNS 216 (328)
T ss_dssp --------C-CCCEE--ESTTCCEEEEEEECCC-CCCGGGG--------------------------GCTTCCEEEEESS
T ss_pred --------cchhhhc--cCCCCCEEECcCCCcC-cchHhhc--------------------------CCCCCCEEEccCC
Confidence 0111121 2444555555555554 3443332 3445555555555
Q ss_pred cccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCccc
Q 004020 248 SFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVAC 327 (779)
Q Consensus 248 ~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (779)
++++.++.+..+++|++|++++|.+.+.+|..+..+++
T Consensus 217 ~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~------------------------------------------ 254 (328)
T 4fcg_A 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP------------------------------------------ 254 (328)
T ss_dssp CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC------------------------------------------
T ss_pred CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC------------------------------------------
Confidence 55544334444444444444444444444444444444
Q ss_pred CccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCcccc
Q 004020 328 DGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELT 407 (779)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 407 (779)
|+.|+|++|.+.+.+|..++++++|++|+|++|++.
T Consensus 255 --------------------------------------------L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 255 --------------------------------------------LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp --------------------------------------------CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred --------------------------------------------CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 455555555555566767788888888888888888
Q ss_pred ccCCccCCCCCCCCceeccCCccc
Q 004020 408 GTIPKELTTLPSLEMLDVSNNHLF 431 (779)
Q Consensus 408 g~iP~~l~~l~~L~~L~Ls~N~l~ 431 (779)
|.+|..+..+++|+.+++..|.+.
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888877553
No 41
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.5e-33 Score=302.31 Aligned_cols=181 Identities=23% Similarity=0.363 Sum_probs=150.8
Q ss_pred HHHHHhhcCCcccceecccccEEEEEEEEc----CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEE
Q 004020 583 QVLRNVTNNFSEENVLGRGGFGTVYKGELH----DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYC 657 (779)
Q Consensus 583 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~ 657 (779)
+.+..+.++|++.+.||+|+||.||+|+.+ +++.||+|++.... ...++.+|+++++.+ +||||+++++++
T Consensus 14 ~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~----~~~~~~~E~~~l~~~~~h~nIv~l~~~~ 89 (361)
T 4f9c_A 14 EAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS----HPIRIAAELQCLTVAGGQDNVMGVKYCF 89 (361)
T ss_dssp HHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS----CHHHHHHHHHHHHHTCSBTTBCCCSEEE
T ss_pred HhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc----CHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 344557789999999999999999999753 46889999986542 335678999999998 599999999999
Q ss_pred EeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC-CcEE
Q 004020 658 LDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD-MRAK 736 (779)
Q Consensus 658 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~-~~~k 736 (779)
.+.+..|+||||+++|+|.+++. .+++.++..++.||+.||+|||+ ++|+||||||+|||++.+ +.+|
T Consensus 90 ~~~~~~~lvmE~~~g~~L~~~~~--------~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~k 158 (361)
T 4f9c_A 90 RKNDHVVIAMPYLEHESFLDILN--------SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKYA 158 (361)
T ss_dssp EETTEEEEEEECCCCCCHHHHHT--------TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEE
T ss_pred EECCEEEEEEeCCCcccHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeEE
Confidence 99999999999999999999882 47899999999999999999997 899999999999999876 8999
Q ss_pred EEeeccceecCCCCCc--------------------------ccccccccCCcccccccccccCCCCC
Q 004020 737 VADFGLVRLAPDNGKH--------------------------SIETRLAGTFGYLAPEYAAETSGMTW 778 (779)
Q Consensus 737 l~DFG~a~~~~~~~~~--------------------------~~~~~~~gt~~y~APE~l~~~~~~t~ 778 (779)
|+|||+|+...+.... ...+..+||+.|||||++.+...++.
T Consensus 159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~ 226 (361)
T 4f9c_A 159 LVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTT 226 (361)
T ss_dssp ECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCT
T ss_pred ECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCC
Confidence 9999999865432110 11233579999999999988766553
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-32 Score=319.63 Aligned_cols=356 Identities=19% Similarity=0.219 Sum_probs=197.9
Q ss_pred cEEEEEecCCCccccCCccccCCCC--CcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEE
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSS--LTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTIS 142 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 142 (779)
.++.|++++|.+++..|..|..++. |++|+|++|++++.++ .|.++++|++|+|++|+++++++..|.++++|++|+
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEe
Confidence 4555555555555555555555433 5555555555555544 455555555555555555555555555555555555
Q ss_pred cccCCCCCC----CCcc----cccCCCCCceEeccCceeEeecCCCccCCCCCc--------------------------
Q 004020 143 LDYNSFDSW----VIPE----SLKDATGLQRFSANGANITGTIPDFLGGDTIPG-------------------------- 188 (779)
Q Consensus 143 Ls~N~l~~~----~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~-------------------------- 188 (779)
|++|...+. .+|. .|..+++|+.|++++|++++..|..+. .+++
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc--cccCCcEEECCCCchhhhhcchhhhccccc
Confidence 554433210 1121 444455555555555555544444443 3444
Q ss_pred --ccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcE
Q 004020 189 --LMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQD 264 (779)
Q Consensus 189 --L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~ 264 (779)
|++|+|++|++++..|..+.. .+|+.|++++|.+...++. ..+..+++|++|+|++|++++..+ .+..+++|+.
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS--GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc--ccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 444555555555444444443 3455555555544322211 223445555555555555555444 2555555555
Q ss_pred EEccCCccc--cccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCC
Q 004020 265 FSVRDNQLT--GIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVG 342 (779)
Q Consensus 265 L~l~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (779)
|++++|.+. +.+|..+..+++|+.|+|++|++++.+|..+.... +...+....+.
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-------~L~~L~Ls~N~---------------- 515 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-------KLEILDLQHNN---------------- 515 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------TCCEEECCSSC----------------
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc-------ccCEEeCCCCC----------------
Confidence 555555554 34555566666666666666666655554332211 00000000000
Q ss_pred CchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCc
Q 004020 343 YPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEM 422 (779)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 422 (779)
+...+....|-. ....+...++|+.|+|++|+++...+..|.++++|+.|+|++|+|++..|..+..+++|++
T Consensus 516 ----l~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 516 ----LARLWKHANPGG---PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp ----CGGGGSTTSTTS---CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ----ccccchhhccCC---cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 000000000000 0011344568999999999999544457999999999999999999666667889999999
Q ss_pred eeccCCcccccCCC-----CCCcceeeeCCCCCCCCCC
Q 004020 423 LDVSNNHLFGKVPN-----FRQNVIVKTDGNPDIGKDS 455 (779)
Q Consensus 423 L~Ls~N~l~g~iP~-----~~~~~~~~~~~n~~~~~~~ 455 (779)
|+|++|+|++.+|. +.....+.+.+||+.|...
T Consensus 589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred EECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999998874 3455678899999999865
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-33 Score=298.53 Aligned_cols=233 Identities=27% Similarity=0.452 Sum_probs=190.4
Q ss_pred cccCCCCccEEEcc-cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc
Q 004020 131 FFKGLTSLQTISLD-YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK 209 (779)
Q Consensus 131 ~~~~l~~L~~L~Ls-~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 209 (779)
.|.++++|++|+|+ +|.+.+ .+|..|.++++|++|++++|++++.+|..+. .+++|++|+|++|++++.+|..++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~- 146 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSIS- 146 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGG-
T ss_pred hHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHh-
Confidence 34555555555555 255544 4566666666666666666677777888776 688888888888888887877665
Q ss_pred CCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCC-CCcEEEccCCccccccChhhhCCCCCC
Q 004020 210 SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLS-SLQDFSVRDNQLTGIVPSSLVNLHSLA 287 (779)
Q Consensus 210 ~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~-~L~~L~l~~N~l~~~~p~~l~~l~~L~ 287 (779)
.+++|++|+|++|++++.+| .+..++ +|++|++++|++++.+|..+..++ |+
T Consensus 147 -------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 147 -------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp -------------------------GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred -------------------------cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 58889999999999998777 488887 999999999999999999999998 99
Q ss_pred EEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccC
Q 004020 288 VVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCD 367 (779)
Q Consensus 288 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (779)
.|+|++|++++.+|..+.
T Consensus 201 ~L~Ls~N~l~~~~~~~~~-------------------------------------------------------------- 218 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFG-------------------------------------------------------------- 218 (313)
T ss_dssp EEECCSSEEEECCGGGCC--------------------------------------------------------------
T ss_pred EEECcCCcccCcCCHHHh--------------------------------------------------------------
Confidence 999999999987765322
Q ss_pred CCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCCCCC---cceee
Q 004020 368 AGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPNFRQ---NVIVK 444 (779)
Q Consensus 368 ~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~---~~~~~ 444 (779)
..++|+.|+|++|.+++.+|. +..+++|++|+|++|+|+|.+|..+..+++|++|+|++|+++|.+|.... ...+.
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence 224799999999999988877 88999999999999999999999999999999999999999999998533 33567
Q ss_pred eCCCCCCCCCCC
Q 004020 445 TDGNPDIGKDSS 456 (779)
Q Consensus 445 ~~~n~~~~~~~~ 456 (779)
+.+|+++|+.|.
T Consensus 298 l~~N~~lc~~p~ 309 (313)
T 1ogq_A 298 YANNKCLCGSPL 309 (313)
T ss_dssp TCSSSEEESTTS
T ss_pred hcCCCCccCCCC
Confidence 889999998764
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-32 Score=315.87 Aligned_cols=154 Identities=21% Similarity=0.260 Sum_probs=139.2
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccC
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYN 146 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 146 (779)
+++++++++++ .+|..+. ++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 46888889998 7787665 799999999999999888 8999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCC-cCCCcccc-CCcceeeccCCCCCC
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQG-PIPLSFGK-SSIQTLWLNGQKGDS 224 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~-~~L~~l~l~~n~~~~ 224 (779)
++.+ ..|..|.++++|++|++++|.+++..|..++ .+++|++|+|++|++++ .+|..++. .+|+.|++++|++..
T Consensus 91 ~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 PIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCT--TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cccc-cChhhcCCcccCCEEEccCCccccccccccC--CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 9987 6789999999999999999999987778886 79999999999999986 67998987 689999999998775
Q ss_pred CCC
Q 004020 225 KLN 227 (779)
Q Consensus 225 ~~~ 227 (779)
...
T Consensus 168 ~~~ 170 (606)
T 3vq2_A 168 ITV 170 (606)
T ss_dssp ECT
T ss_pred cCh
Confidence 433
No 45
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=3e-33 Score=315.47 Aligned_cols=177 Identities=25% Similarity=0.368 Sum_probs=149.9
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChh----HHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEK----GFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
.++|++.++||+|+||.||+|+.. +|+.||||++.+...... .......++.+++.++|||||+++++|.+.+..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 468999999999999999999875 699999999975432211 122334456777788999999999999999999
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
|+|||||+||+|.+++.... .+++..+..|+.||+.||+|||+ ++||||||||+|||++.+|++||+|||+|
T Consensus 268 ylVmEy~~GGdL~~~l~~~~-----~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL~DFGlA 339 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG-----VFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLA 339 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred EEEEecCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEeccccee
Confidence 99999999999999996542 58999999999999999999996 89999999999999999999999999999
Q ss_pred eecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+...... ....+||+.|||||++.+..+|+
T Consensus 340 ~~~~~~~----~~t~~GTp~YmAPEvl~~~~~y~ 369 (689)
T 3v5w_A 340 CDFSKKK----PHASVGTHGYMAPEVLQKGVAYD 369 (689)
T ss_dssp EECSSCC----CCSCCSCGGGCCHHHHSTTCCCC
T ss_pred eecCCCC----CCCccCCcCccCHHHHhCCCCCC
Confidence 8875432 23468999999999997655554
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=318.92 Aligned_cols=286 Identities=18% Similarity=0.214 Sum_probs=226.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
.+++.|+|++|.+++..|..|..+++|++|+|++|.|++.+| .|+++++|++|+|++|.|+.+|+..|.++++|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 379999999999999888899999999999999999999888 6899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCC
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGD 223 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~ 223 (779)
++|.+.+ ..|..|..+++|+.|++++|.+++.. +. .+++|++|++++|.+++... ...|+.|++++|.+.
T Consensus 155 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~---~~--~l~~L~~L~l~~n~l~~l~~----~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 155 SNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD---LS--LIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSIN 224 (597)
T ss_dssp CSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC---GG--GCTTCSEEECCSSCCSEEEC----CTTCSEEECCSSCCC
T ss_pred eCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC---hh--hhhhhhhhhcccCccccccC----CchhheeeccCCccc
Confidence 9999987 67888999999999999999998653 22 57889999999999985311 136888999888876
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
...... .++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|++++..+..
T Consensus 225 ~~~~~~------~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 297 (597)
T 3oja_B 225 VVRGPV------NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 297 (597)
T ss_dssp EEECSC------CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSS
T ss_pred cccccc------CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccc
Confidence 543322 36788999999988874 56788889999999999998888888989999999999999888854432
Q ss_pred CCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcccc
Q 004020 304 NSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLS 383 (779)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 383 (779)
.....+.. +....+.... ++ ......++|+.|+|++|.++
T Consensus 298 ~~l~~L~~--------L~Ls~N~l~~-i~-------------------------------~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 298 QPIPTLKV--------LDLSHNHLLH-VE-------------------------------RNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp SCCTTCCE--------EECCSSCCCC-CG-------------------------------GGHHHHTTCSEEECCSSCCC
T ss_pred ccCCCCcE--------EECCCCCCCc-cC-------------------------------cccccCCCCCEEECCCCCCC
Confidence 21111111 1110000000 00 00112347999999999998
Q ss_pred ccccccccccccCCeEeccCccccccC
Q 004020 384 GTISSNFSRLTSLRQLMLSGNELTGTI 410 (779)
Q Consensus 384 g~~p~~~~~l~~L~~L~Ls~N~l~g~i 410 (779)
+. | ++.+++|+.|+|++|.+++..
T Consensus 338 ~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 338 TL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred Cc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 65 3 778899999999999999754
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=312.69 Aligned_cols=356 Identities=18% Similarity=0.206 Sum_probs=231.9
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccC
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYN 146 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 146 (779)
+.||+++|+++ .+|..+. ++|++|+|++|++++.+| .|.++++|++|+|++|++++++++.|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57999999999 6888777 899999999999999887 8999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeEe-ecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCc--ceeeccCCCC-
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANITG-TIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSI--QTLWLNGQKG- 222 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L--~~l~l~~n~~- 222 (779)
++.. +|.. .+++|++|++++|.+++ .+|..++ .+++|++|+|++|++++.....+ ..| +.|++++|.+
T Consensus 80 ~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 80 KLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETY 151 (520)
T ss_dssp CCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSCCGGGGGGG--TTSCEEEEEEEECTTT
T ss_pred ceee--cCcc--ccCCccEEeccCCccccccchhhhc--cCCcceEEEecCcccchhhcccc--ccceeeEEEeeccccc
Confidence 9975 6666 89999999999999997 4788887 79999999999999986322222 345 8888888877
Q ss_pred -CCCCCCchhh-----------------------------------------------------hcC-------------
Q 004020 223 -DSKLNGSVAV-----------------------------------------------------IQN------------- 235 (779)
Q Consensus 223 -~~~~~~~~~~-----------------------------------------------------~~~------------- 235 (779)
....+..+.. +..
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 3222221111 111
Q ss_pred --------------CCCccEEEeecCcccCCCCC-C-----CCCCCCcEEEccCCccccccC-hh---------------
Q 004020 236 --------------MTSLTQLWLHGNSFTGPLPD-L-----SGLSSLQDFSVRDNQLTGIVP-SS--------------- 279 (779)
Q Consensus 236 --------------l~~L~~L~L~~N~l~~~~~~-~-----~~l~~L~~L~l~~N~l~~~~p-~~--------------- 279 (779)
+++|++|+|++|+++|.+|. + ..+++|+.+++++|.+ .+| ..
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 23677888888888876664 4 5555555555555555 233 11
Q ss_pred ----------hhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCc--cchhhhhhcccCCCchhc
Q 004020 280 ----------LVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDG--RVNVLLSIVKSVGYPAVL 347 (779)
Q Consensus 280 ----------l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 347 (779)
+..+++|++|+|++|++++.+|..+.... +...+....+.... ..+.....+..+.
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~l~~~~~~~~~l~~L~----- 377 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-------ELETLILQMNQLKELSKIAEMTTQMKSLQ----- 377 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCS-------SCCEEECCSSCCCBHHHHHHHHTTCTTCC-----
T ss_pred CCCccccccchhhCCcccEEEeECCccChhhhhhhccCC-------CCCEEEccCCccCccccchHHHhhCCCCC-----
Confidence 15667777777777777776665433221 11111111111110 0000000011110
Q ss_pred ccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccC
Q 004020 348 AESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSN 427 (779)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 427 (779)
......+..........+...++|+.|+|++|++++.+|..+. ++|+.|+|++|+|+ .+|..+..+++|++|+|++
T Consensus 378 -~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 378 -QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp -EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred -EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCC
Confidence 0001110000000001123345677777777777776666554 67777777777777 7777666777777777777
Q ss_pred CcccccCCC--C---CCcceeeeCCCCCCCC
Q 004020 428 NHLFGKVPN--F---RQNVIVKTDGNPDIGK 453 (779)
Q Consensus 428 N~l~g~iP~--~---~~~~~~~~~~n~~~~~ 453 (779)
|+|++ +|. + .....+.+.+|++.|.
T Consensus 454 N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 454 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 77773 443 2 2333556666666664
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.8e-32 Score=310.75 Aligned_cols=336 Identities=15% Similarity=0.166 Sum_probs=242.5
Q ss_pred EEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 67 VTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 67 v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
.+.+++++++++ .+|..+. ++|++|+|++|+|++.++ .|.++++|++|+|++|++++++++.|.++++|++|+|++
T Consensus 33 ~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 389999999999 4887765 899999999999999887 899999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEe-ecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCC--
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITG-TIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKG-- 222 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~-- 222 (779)
|+|.. +|.. .+++|++|++++|++++ .+|..++ .+++|++|+|++|++++.....+....|+.|++++|.+
T Consensus 110 N~l~~--lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQN--ISCC--PMASLRHLDLSFNDFDVLPVCKEFG--NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCE--ECSC--CCTTCSEEECCSSCCSBCCCCGGGG--GCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCc--cCcc--ccccCCEEECCCCCccccCchHhhc--ccCcccEEecCCCccccCchhhhhhceeeEEEeecccccc
Confidence 99985 6665 89999999999999997 3467887 79999999999999986433333333459999999988
Q ss_pred CCCCCCchhh-----------------------hcCCCCccEEEeecCcc-----cCCCC--------------------
Q 004020 223 DSKLNGSVAV-----------------------IQNMTSLTQLWLHGNSF-----TGPLP-------------------- 254 (779)
Q Consensus 223 ~~~~~~~~~~-----------------------~~~l~~L~~L~L~~N~l-----~~~~~-------------------- 254 (779)
....+..+.. +..+++|+.|++++|+. .+.++
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 5444433322 22455677777777631 11000
Q ss_pred -------CCCCCCCCcEEEccCCccccccChhh-----------------------------------------------
Q 004020 255 -------DLSGLSSLQDFSVRDNQLTGIVPSSL----------------------------------------------- 280 (779)
Q Consensus 255 -------~~~~l~~L~~L~l~~N~l~~~~p~~l----------------------------------------------- 280 (779)
.....++|++|++++|+++|.+|..+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 01112488999999999998888765
Q ss_pred ------hCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCC
Q 004020 281 ------VNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGN 354 (779)
Q Consensus 281 ------~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (779)
..+++|++|+|++|++++.+|..+.... +...+....+.... ....
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~-~~~~-------------------- 395 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-------RLQTLILQRNGLKN-FFKV-------------------- 395 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCS-------SCCEEECCSSCCCB-TTHH--------------------
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccC-------CCCEEECCCCCcCC-cccc--------------------
Confidence 6789999999999999998876543321 01111110000000 0000
Q ss_pred CCCCCCCCccccCCCCCeEEEEccCccccccccc-cccccccCCeEeccCccccccCCccCCCCCCCCceeccCCccccc
Q 004020 355 NPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISS-NFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGK 433 (779)
Q Consensus 355 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ 433 (779)
.......++|+.|+|++|++++.+|. .+..+++|++|+|++|+|++.+|..+. ++|++|||++|+++ .
T Consensus 396 --------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ 464 (562)
T 3a79_B 396 --------ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-S 464 (562)
T ss_dssp --------HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-C
T ss_pred --------hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-c
Confidence 00122345788888888888875665 477788888888888888887777665 67888888888887 4
Q ss_pred CCC-C---CCcceeeeCCCCC
Q 004020 434 VPN-F---RQNVIVKTDGNPD 450 (779)
Q Consensus 434 iP~-~---~~~~~~~~~~n~~ 450 (779)
+|. + .....+.+.+|..
T Consensus 465 ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CCTTTTSSCCCSEEECCSSCC
T ss_pred cChhhcCCCCCCEEECCCCCC
Confidence 554 2 2333555666643
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=5.6e-31 Score=293.10 Aligned_cols=212 Identities=19% Similarity=0.166 Sum_probs=183.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.++++|++++|++++. | .+..+++|++|+|++|+|++.+ ++.+++|++|++++|++++++ +.++++|++|+|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 5799999999999964 5 7999999999999999999863 899999999999999999985 8899999999999
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGD 223 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~ 223 (779)
+|++.+ +| +..+++|++|++++|++++. + ++ .+++|++|++++|+..+.++ ++. .+|+.|++++|++.
T Consensus 115 ~N~l~~--l~--~~~l~~L~~L~l~~N~l~~l-~--l~--~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 115 TNKLTK--LD--VSQNPLLTYLNCARNTLTEI-D--VS--HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp SSCCSC--CC--CTTCTTCCEEECTTSCCSCC-C--CT--TCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCC
T ss_pred CCcCCe--ec--CCCCCcCCEEECCCCcccee-c--cc--cCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccc
Confidence 999986 44 88999999999999999974 3 44 68999999999997666663 444 67999999999887
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
... +..+++|+.|++++|++++. ++..+++|+.|++++|++++ +| +..+++|+.|++++|++++.++..
T Consensus 184 ~l~------l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 184 ELD------VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp CCC------CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred eec------cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence 742 56889999999999999986 48889999999999999997 66 889999999999999999976654
Q ss_pred CC
Q 004020 304 NS 305 (779)
Q Consensus 304 ~~ 305 (779)
+.
T Consensus 253 l~ 254 (457)
T 3bz5_A 253 LS 254 (457)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.4e-31 Score=306.62 Aligned_cols=375 Identities=20% Similarity=0.189 Sum_probs=244.6
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccC
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYN 146 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 146 (779)
+.++.++.+++ .+|..+. +++++|+|++|++++.++ .|.++++|++|+|++|++++++++.|.++++|++|+|++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 34667777777 6777654 589999999999999887 8999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCC-cCCCcccc-CCcceeeccCCCCCC
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQG-PIPLSFGK-SSIQTLWLNGQKGDS 224 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~-~~L~~l~l~~n~~~~ 224 (779)
++.+ ..|..|.++++|++|++++|++++..+..++ .+++|++|+|++|.+++ .+|..++. .+|+.|++++|++..
T Consensus 87 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 87 PIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCSCT--TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cCCc-cCHhhhcCccccccccccccccccCCCcccc--ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 9976 5678999999999999999999976665675 79999999999999997 47999987 689999999999876
Q ss_pred CCCCchhhhcCCCCc-cEEEeecCcccCCCCC------------------------------------------------
Q 004020 225 KLNGSVAVIQNMTSL-TQLWLHGNSFTGPLPD------------------------------------------------ 255 (779)
Q Consensus 225 ~~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~------------------------------------------------ 255 (779)
.....+..+.+++.+ +.|++++|.+++..|.
T Consensus 164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred ecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 654444433333221 5677777766655443
Q ss_pred ----------------------------------CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCC
Q 004020 256 ----------------------------------LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 256 ----------------------------------~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~ 320 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFP 320 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCC
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccC
Confidence 233455555555555555 345555554 5555555555554 222
Q ss_pred CC-CCC-ccccccc-----------CCCCcccCCCCcccCccc--hhhhhhcccCCCc---h--------------hccc
Q 004020 302 KF-NSP-VRFDMAK-----------GSNSFCLDDAGVACDGRV--NVLLSIVKSVGYP---A--------------VLAE 349 (779)
Q Consensus 302 ~~-~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~--------------~~~~ 349 (779)
.. +.. ..+.+.. ..+...+....+...... .........+... . .+..
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400 (570)
T ss_dssp BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred cccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCE
Confidence 11 000 0000000 000011111111000000 0000001111000 0 0000
Q ss_pred ccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCcccc-ccCCccCCCCCCCCceeccCC
Q 004020 350 SWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELT-GTIPKELTTLPSLEMLDVSNN 428 (779)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~iP~~l~~l~~L~~L~Ls~N 428 (779)
.....+..........+...++|+.|++++|.+.+.+|..|..+++|++|+|++|+++ +.+|..+..+++|++|+|++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 0000000000000012345568888899999888888888888899999999999987 678888888999999999999
Q ss_pred cccccCCC-C---CCcceeeeCCCCCC
Q 004020 429 HLFGKVPN-F---RQNVIVKTDGNPDI 451 (779)
Q Consensus 429 ~l~g~iP~-~---~~~~~~~~~~n~~~ 451 (779)
++++.+|. + .....+.+.+|...
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCC
Confidence 99888775 2 23445666666443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.98 E-value=2e-32 Score=295.46 Aligned_cols=284 Identities=17% Similarity=0.260 Sum_probs=235.7
Q ss_pred CCCCCcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCC
Q 004020 50 DPDPCKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVP 128 (779)
Q Consensus 50 ~~~~C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~ 128 (779)
...+|.|.++ | ++++++++ .+|..+. ++|++|+|++|++++.++ .|.++++|++|+|++|++++++
T Consensus 26 ~~~~C~~~~~-c---------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 26 ASLSCDRNGI-C---------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp -CCEECTTSE-E---------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred cCCCCCCCeE-e---------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 3567888876 5 45678888 6787666 499999999999998887 7999999999999999999999
Q ss_pred cccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCC--CccCCCCCcccEEEccCCC-CCCcCCC
Q 004020 129 SDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPD--FLGGDTIPGLMHLHLAFNF-LQGPIPL 205 (779)
Q Consensus 129 ~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~~~l~~L~~L~L~~N~-l~~~~p~ 205 (779)
+..|.++++|++|+|++|++.+ ..+..|.++++|++|++++|++++ +|. .+. .+++|++|++++|+ +++..|.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFS--HLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCT--TCTTCCEEEEEESSSCCEECTT
T ss_pred HhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcc-cCchhhhc--cCCCCcEEECCCCccccccCHH
Confidence 9999999999999999999986 445569999999999999999984 554 564 79999999999995 6655555
Q ss_pred ccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccChhhhCCC
Q 004020 206 SFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLH 284 (779)
Q Consensus 206 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~ 284 (779)
.++ .+++|++|+|++|++++.+| .+..+++|++|++++|++....+..+..++
T Consensus 169 ~~~--------------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 222 (353)
T 2z80_A 169 DFA--------------------------GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222 (353)
T ss_dssp TTT--------------------------TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT
T ss_pred Hcc--------------------------CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc
Confidence 554 68999999999999999877 589999999999999999754444556799
Q ss_pred CCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCcc
Q 004020 285 SLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGV 364 (779)
Q Consensus 285 ~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (779)
+|+.|+|++|++++..+..+...
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~--------------------------------------------------------- 245 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTG--------------------------------------------------------- 245 (353)
T ss_dssp TEEEEEEESCBCTTCCCC--------------------------------------------------------------
T ss_pred cccEEECCCCccccccccccccc---------------------------------------------------------
Confidence 99999999999987655421110
Q ss_pred ccCCCCCeEEEEccCccccc----cccccccccccCCeEeccCccccccCCcc-CCCCCCCCceeccCCcccccCCC
Q 004020 365 SCDAGGNITVVNLKNLGLSG----TISSNFSRLTSLRQLMLSGNELTGTIPKE-LTTLPSLEMLDVSNNHLFGKVPN 436 (779)
Q Consensus 365 ~~~~~~~L~~L~Ls~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l~g~iP~ 436 (779)
.....++.++|+++.+++ .+|..+..+++|+.|+|++|+|+ .+|.. +..+++|++|+|++|++++..|.
T Consensus 246 --~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 246 --ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred --cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 012357778888888887 57889999999999999999999 78777 58999999999999999998874
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.7e-32 Score=314.72 Aligned_cols=344 Identities=19% Similarity=0.182 Sum_probs=253.4
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCC-cccccCCCCccEE
Q 004020 64 SNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVP-SDFFKGLTSLQTI 141 (779)
Q Consensus 64 ~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L 141 (779)
-.++++|+|++|++++..|.+|..+++|++|+|++|++++.++ .|+++++|++|+|++|+++.++ +..|.++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 3579999999999999888999999999999999999999888 5999999999999999999763 4578999999999
Q ss_pred EcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccC----------------------CCCCcccEEEccCCCC
Q 004020 142 SLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGG----------------------DTIPGLMHLHLAFNFL 199 (779)
Q Consensus 142 ~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~----------------------~~l~~L~~L~L~~N~l 199 (779)
+|++|++.+...+..|.++++|+.|++++|.+++..|..++. ..+++|++|+|++|++
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 999999544344578999999999999999999988887752 1367888888999988
Q ss_pred CCcC--CCcccc--C-----------------------------------------------------------------
Q 004020 200 QGPI--PLSFGK--S----------------------------------------------------------------- 210 (779)
Q Consensus 200 ~~~~--p~~~~~--~----------------------------------------------------------------- 210 (779)
++.. |..+.. .
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 8742 111100 1
Q ss_pred ----------------------CcceeeccCCCCCCCCCCchhhh-cCCCCccEEEeecCcccCCCC----CCCCCCCCc
Q 004020 211 ----------------------SIQTLWLNGQKGDSKLNGSVAVI-QNMTSLTQLWLHGNSFTGPLP----DLSGLSSLQ 263 (779)
Q Consensus 211 ----------------------~L~~l~l~~n~~~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~ 263 (779)
+|+.|++++|++.. .+..+ ..+++|++|+|++|++++.+| .+..+++|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~----ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL----VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC----CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCcccc----CCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 23334444443321 22233 578999999999999998653 377899999
Q ss_pred EEEccCCccccccC--hhhhCCCCCCEEEccCccccccCCCCCCCccccccc-CCCCcccCCCCcccCccchhhhhhccc
Q 004020 264 DFSVRDNQLTGIVP--SSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAK-GSNSFCLDDAGVACDGRVNVLLSIVKS 340 (779)
Q Consensus 264 ~L~l~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (779)
+|++++|++++..+ ..+..+++|++|+|++|++++.++.+.....+.... ..|.+. ... ... ..
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~--~l~-------~~~---~~- 431 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR--VVK-------TCI---PQ- 431 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS--CCC-------TTS---CT-
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc--ccc-------chh---cC-
Confidence 99999999986543 568999999999999999995433322222211111 111110 000 000 00
Q ss_pred CCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCC
Q 004020 341 VGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSL 420 (779)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L 420 (779)
.+.......+ ...+. ....++|+.|+|++|+++ .+|. ...+++|++|+|++|+|++.+|..+..+++|
T Consensus 432 -----~L~~L~Ls~N----~l~~~-~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 432 -----TLEVLDVSNN----NLDSF-SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499 (549)
T ss_dssp -----TCSEEECCSS----CCSCC-CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred -----CceEEECCCC----Chhhh-cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCccc
Confidence 0111111111 11111 134568999999999999 6776 5789999999999999999889899999999
Q ss_pred CceeccCCcccccCCC
Q 004020 421 EMLDVSNNHLFGKVPN 436 (779)
Q Consensus 421 ~~L~Ls~N~l~g~iP~ 436 (779)
++|+|++|++++..|.
T Consensus 500 ~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 500 QKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CEEECCSSCBCCCHHH
T ss_pred CEEEecCCCccCCCcc
Confidence 9999999999999884
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.2e-31 Score=283.54 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=180.7
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccC
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYN 146 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 146 (779)
+.+++++++++ .+|..+. ++|++|+|++|.+++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 34455555555 5555553 467777777777766655 5677777777777777777776666777777777777777
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCC--CcCCCccccCCcceeeccCCCCCC
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQ--GPIPLSFGKSSIQTLWLNGQKGDS 224 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~~~L~~l~l~~n~~~~ 224 (779)
++.. +|..+. ++|++|++++|.+++..+..+. .+++|++|+|++|.++ +..|..+...+|+.|++++|++..
T Consensus 113 ~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 113 HLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp CCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred cCCc--cCcccc--ccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 7653 444433 6677777777777654444454 5667777777777764 255555554566666666665554
Q ss_pred CCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 225 KLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 225 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
..... .++|+.|+|++|.+++.++ .+..+++|+.|++++|++++..|..+..+++|+.|+|++|+++ .+|..
T Consensus 187 l~~~~------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 187 IPKDL------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp CCSSS------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred cCccc------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 22211 2567777777777777665 4777777777777777777666667777777777777777776 33321
Q ss_pred CCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcccc
Q 004020 304 NSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLS 383 (779)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 383 (779)
+. ..++|+.|+|++|.++
T Consensus 260 l~--------------------------------------------------------------~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 260 LP--------------------------------------------------------------DLKLLQVVYLHTNNIT 277 (332)
T ss_dssp GG--------------------------------------------------------------GCTTCCEEECCSSCCC
T ss_pred hh--------------------------------------------------------------cCccCCEEECCCCCCC
Confidence 10 1235777777777777
Q ss_pred cccccccccc------ccCCeEeccCcccc--ccCCccCCCCCCCCceeccCCc
Q 004020 384 GTISSNFSRL------TSLRQLMLSGNELT--GTIPKELTTLPSLEMLDVSNNH 429 (779)
Q Consensus 384 g~~p~~~~~l------~~L~~L~Ls~N~l~--g~iP~~l~~l~~L~~L~Ls~N~ 429 (779)
+..+..|..+ ..|+.|+|++|.+. +..|..+..+++|+.++|++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6655555443 56778888888876 5666777788888888887774
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.9e-31 Score=280.71 Aligned_cols=105 Identities=20% Similarity=0.357 Sum_probs=53.3
Q ss_pred CCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEec
Q 004020 90 SLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSA 168 (779)
Q Consensus 90 ~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l 168 (779)
+|++|+|++|++++.++ .|.++++|++|+|++|+++++++..|.++++|++|+|++|++.. +|..+. ++|+.|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cChhhc--ccccEEEC
Confidence 45555555555555444 45555555555555555555544555555555555555555543 333222 45555555
Q ss_pred cCceeEeecCCCccCCCCCcccEEEccCCCCC
Q 004020 169 NGANITGTIPDFLGGDTIPGLMHLHLAFNFLQ 200 (779)
Q Consensus 169 ~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~ 200 (779)
++|.+++..+..+. .+++|++|+|++|.++
T Consensus 129 ~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 129 HENEITKVRKSVFN--GLNQMIVVELGTNPLK 158 (330)
T ss_dssp CSSCCCBBCHHHHT--TCTTCCEEECCSSCCC
T ss_pred CCCcccccCHhHhc--CCccccEEECCCCcCC
Confidence 55555544443343 4555555555555553
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=7.2e-31 Score=315.53 Aligned_cols=335 Identities=18% Similarity=0.165 Sum_probs=248.9
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCC-CCCCCcccccCCCCccEEEccc
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNN-FTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
...|.++++++ .+|. -.++|++|+|++|+|++..+ .|.++++|++|+|++|. +..+++..|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 56788899999 6676 45799999999999999877 89999999999999994 5567788999999999999999
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEeecCCC--ccCCCCCcccEEEccCCCCCCcCC-Ccccc-CCcceeeccCCC
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITGTIPDF--LGGDTIPGLMHLHLAFNFLQGPIP-LSFGK-SSIQTLWLNGQK 221 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~-~~L~~l~l~~n~ 221 (779)
|++.+ ..|..|.++++|++|+|++|.+++.+|.. +. .+++|++|+|++|.+++..+ ..++. .+|+.|++++|.
T Consensus 83 N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 83 SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR--NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS--SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CcCcc-cCHhHccCCcccCEeeCcCCCCCcccccCcccc--ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 99986 67999999999999999999999877665 65 79999999999999998765 46666 679999999998
Q ss_pred CCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCC------CcEEEccCCccccccChhhhCC-----------
Q 004020 222 GDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSS------LQDFSVRDNQLTGIVPSSLVNL----------- 283 (779)
Q Consensus 222 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~------L~~L~l~~N~l~~~~p~~l~~l----------- 283 (779)
+.......+..+.. ++|+.|+|++|.+.+..| .+..+++ |+.|++++|.+++.+|..+...
T Consensus 160 i~~~~~~~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 160 IFLVCEHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCSGGGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred CCeeCHHHcccccC-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 87766555443322 788889999998888766 3555544 8888888888877766655432
Q ss_pred ---------------------------CCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhh
Q 004020 284 ---------------------------HSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLS 336 (779)
Q Consensus 284 ---------------------------~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (779)
++|+.|+|++|.+.+..|..+.... +...+....+....
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~L~~n~i~~------- 304 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-------DLKVLNLAYNKINK------- 304 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC-------CCCEEEEESCCCCE-------
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC-------CCCEEECCCCcCCC-------
Confidence 4566666666666666555433221 00000000000000
Q ss_pred hcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCC
Q 004020 337 IVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTT 416 (779)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 416 (779)
.....+...++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..|..+..
T Consensus 305 ------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 305 ------------------------IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp ------------------------ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred ------------------------CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 00001223457888888888888888888888888888899888888777777888
Q ss_pred CCCCCceeccCCcccccCCCCCCcceeeeCCCC
Q 004020 417 LPSLEMLDVSNNHLFGKVPNFRQNVIVKTDGNP 449 (779)
Q Consensus 417 l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~n~ 449 (779)
+++|++|+|++|.+++ +|.+.....+.+.+|.
T Consensus 361 l~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 361 LEKLQTLDLRDNALTT-IHFIPSIPDIFLSGNK 392 (844)
T ss_dssp CCCCCEEEEETCCSCC-CSSCCSCSEEEEESCC
T ss_pred CCCCCEEECCCCCCCc-ccCCCCcchhccCCCC
Confidence 8888899998888875 3333333344445554
No 56
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.97 E-value=1.1e-31 Score=305.55 Aligned_cols=174 Identities=26% Similarity=0.423 Sum_probs=152.1
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++.... ....+.+.+|+++|+.++|||||+++++|.+.+..|+||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~ 233 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY 233 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc--hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence 468999999999999999999875 79999999987543 344567899999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC--CcEEEEeecccee
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD--MRAKVADFGLVRL 745 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~--~~~kl~DFG~a~~ 745 (779)
|||++|+|.+++..+. ..+++.++..++.||+.||+|||+ ++|+||||||+|||++.+ +.+||+|||+|+.
T Consensus 234 E~~~gg~L~~~i~~~~----~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~ 306 (573)
T 3uto_A 234 EFMSGGELFEKVADEH----NKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH 306 (573)
T ss_dssp ECCCCCBHHHHHTCTT----SCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCSSCEE
T ss_pred eecCCCcHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeeccceeE
Confidence 9999999999885432 258999999999999999999996 899999999999999854 8999999999998
Q ss_pred cCCCCCcccccccccCCcccccccccccC
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
+.... .....+||+.|||||++.+..
T Consensus 307 ~~~~~---~~~~~~GT~~y~APEv~~~~~ 332 (573)
T 3uto_A 307 LDPKQ---SVKVTTGTAEFAAPEVAEGKP 332 (573)
T ss_dssp CCTTS---EEEEECSSGGGCCHHHHTTCC
T ss_pred ccCCC---ceeeeEECccccCHHHhCCCC
Confidence 76532 224457999999999998753
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=8.3e-30 Score=297.53 Aligned_cols=172 Identities=21% Similarity=0.245 Sum_probs=139.9
Q ss_pred CCCCCCCCcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCC
Q 004020 47 GWTDPDPCKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFT 125 (779)
Q Consensus 47 ~w~~~~~C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~ 125 (779)
.|...-|..|..-.|.... ++.+.++.+++ .+|..+. +++++|||++|+|+++++ +|.++++|++|+|++|+|+
T Consensus 15 ~~~~~~p~~~~~c~~~~~~--~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~ 89 (635)
T 4g8a_A 15 AANSSIPESWEPCVEVVPN--ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 89 (635)
T ss_dssp ----------CCSEEEETT--TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cccCCCCCCCCCccccCCC--CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC
Confidence 4555556678765554332 35689999999 7887664 489999999999999887 8999999999999999999
Q ss_pred CCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCC-cCC
Q 004020 126 SVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQG-PIP 204 (779)
Q Consensus 126 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~-~~p 204 (779)
.+++++|.++++|++|+|++|+|++ ..+..|.++++|++|+|++|++++..+..|+ .+++|++|+|++|++++ .+|
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~--~L~~L~~L~Ls~N~l~~~~~~ 166 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLP 166 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEECTTSCCCCSTTCCCT--TCTTCCEEECCSSCCCCCCCC
T ss_pred CcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEECCCCcCCCCChhhhh--cCcccCeeccccCccccCCCc
Confidence 9999999999999999999999987 5667899999999999999999987777786 79999999999999986 467
Q ss_pred Ccccc-CCcceeeccCCCCCCCC
Q 004020 205 LSFGK-SSIQTLWLNGQKGDSKL 226 (779)
Q Consensus 205 ~~~~~-~~L~~l~l~~n~~~~~~ 226 (779)
..++. ..|++|++++|++....
T Consensus 167 ~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 167 EYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp GGGGGCTTCCEEECCSSCCCEEC
T ss_pred hhhccchhhhhhcccCccccccc
Confidence 77766 68999999999876443
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1e-30 Score=293.02 Aligned_cols=318 Identities=22% Similarity=0.334 Sum_probs=216.2
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.++++|+|++|.+++..+ +..+++|++|+|++|++++.++ +.++++|++|++++|+++.+++ +.++++|++|+|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence 468888888888885543 8888888888888888887766 8888888888888888888765 7888888888888
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGD 223 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~ 223 (779)
+|++.+ ++ .+..+++|+.|+++ |++.+..+ +. .+++|++|++++|.+++. + .+.. .+|+.|++++|.+.
T Consensus 143 ~n~l~~--~~-~~~~l~~L~~L~l~-~~~~~~~~--~~--~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 143 SNTISD--IS-ALSGLTSLQQLSFG-NQVTDLKP--LA--NLTTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEECC--CG-GGTTCTTCSEEEEE-ESCCCCGG--GT--TCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCC
T ss_pred CCccCC--Ch-hhccCCcccEeecC-CcccCchh--hc--cCCCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccc
Confidence 888865 33 36677777777774 34443222 43 677888888888888743 3 2433 67888888888766
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
.... +..+++|+.|+|++|++++. +.+..+++|+.|++++|++.+..| +..+++|+.|+|++|++++..+ +
T Consensus 213 ~~~~-----~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~ 283 (466)
T 1o6v_A 213 DITP-----LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-L 283 (466)
T ss_dssp CCGG-----GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-G
T ss_pred cccc-----ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-c
Confidence 5422 55678888888888887763 567777888888888888876544 7778888888888888876544 1
Q ss_pred CCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcccc
Q 004020 304 NSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLS 383 (779)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 383 (779)
.....+ ..+....+.... . ......++|+.|+|++|+++
T Consensus 284 ~~l~~L--------~~L~L~~n~l~~-------------------------------~--~~~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 284 AGLTAL--------TNLELNENQLED-------------------------------I--SPISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp TTCTTC--------SEEECCSSCCSC-------------------------------C--GGGGGCTTCSEEECCSSCCS
T ss_pred cCCCcc--------CeEEcCCCcccC-------------------------------c--hhhcCCCCCCEEECcCCcCC
Confidence 111111 001000000000 0 00123347888888888888
Q ss_pred ccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCC--CCCcceeeeCCCCCC
Q 004020 384 GTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN--FRQNVIVKTDGNPDI 451 (779)
Q Consensus 384 g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~--~~~~~~~~~~~n~~~ 451 (779)
+..| ++.+++|+.|+|++|++++. ..+..+++|++|++++|++++.+|- +.....+.+.+|++.
T Consensus 323 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 323 DISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEE
T ss_pred Cchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCccc
Confidence 7666 67888888888888888854 4677888888888888888887762 222334555555543
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.7e-30 Score=277.86 Aligned_cols=283 Identities=21% Similarity=0.275 Sum_probs=241.3
Q ss_pred CcceeeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCC
Q 004020 54 CKWKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDN 122 (779)
Q Consensus 54 C~w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N 122 (779)
|.|..+.|+.. .+++.|++++|++++..|..|..+++|++|+|++|++++.+| .|.++++|++|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 68999999752 379999999999998888899999999999999999999877 8999999999999999
Q ss_pred CCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeE--eecCCCccCCCCCcccEEEccCCCCC
Q 004020 123 NFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANIT--GTIPDFLGGDTIPGLMHLHLAFNFLQ 200 (779)
Q Consensus 123 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~~~l~~L~~L~L~~N~l~ 200 (779)
+++.+|...+ ++|++|++++|++.. ..+..|.++++|+.|++++|.++ +..|..+. .+ +|++|++++|+++
T Consensus 113 ~l~~l~~~~~---~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 113 HLVEIPPNLP---SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD--GL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCCSCCSSCC---TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC--SC-CCSCCBCCSSBCS
T ss_pred cCCccCcccc---ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCccccc--CC-ccCEEECcCCCCC
Confidence 9999998765 799999999999986 56677999999999999999996 36677775 45 9999999999999
Q ss_pred CcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChh
Q 004020 201 GPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSS 279 (779)
Q Consensus 201 ~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~ 279 (779)
+ +|..+. .+|+.|++++|.+..... ..+..+++|+.|+|++|++++.++. +..+++|++|++++|+++ .+|..
T Consensus 186 ~-l~~~~~-~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 186 G-IPKDLP-ETLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp S-CCSSSC-SSCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred c-cCcccc-CCCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 5 777665 689999999998876543 3466889999999999999998884 889999999999999999 78999
Q ss_pred hhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCC
Q 004020 280 LVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNS 359 (779)
Q Consensus 280 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (779)
+..+++|++|+|++|++++..+..+.....
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-------------------------------------------------- 289 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGF-------------------------------------------------- 289 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSC--------------------------------------------------
T ss_pred hhcCccCCEEECCCCCCCccChhHcccccc--------------------------------------------------
Confidence 999999999999999999877654332110
Q ss_pred CCCccccCCCCCeEEEEccCcccc--ccccccccccccCCeEeccCcc
Q 004020 360 DWKGVSCDAGGNITVVNLKNLGLS--GTISSNFSRLTSLRQLMLSGNE 405 (779)
Q Consensus 360 ~~~~~~~~~~~~L~~L~Ls~n~l~--g~~p~~~~~l~~L~~L~Ls~N~ 405 (779)
......|+.|++++|.+. +..|..|..+++|+.|+|++|+
T Consensus 290 ------~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 ------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ------CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ------ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 001236899999999988 6778899999999999999985
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.2e-31 Score=289.32 Aligned_cols=310 Identities=13% Similarity=0.108 Sum_probs=232.3
Q ss_pred cCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCc
Q 004020 86 NSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQ 164 (779)
Q Consensus 86 ~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~ 164 (779)
..+++|++|++++|.++..++ .|.++++|++|+|++|.++.+++..|..+++|++|+|++|++.+ ..|..|.++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCC
Confidence 457899999999999998877 48999999999999999999999999999999999999999987 6778899999999
Q ss_pred eEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCCCCCCCchhhhcCCCCccEEE
Q 004020 165 RFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLW 243 (779)
Q Consensus 165 ~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~ 243 (779)
+|++++|.++...+..+. .+++|++|+|++|++++..|..++. .+|+.|++++|.+... .+..+++|+.|+
T Consensus 121 ~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~L~~L~ 192 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFH--NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSLFHAN 192 (390)
T ss_dssp EEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC------CGGGCTTCSEEE
T ss_pred EEECCCCccCcCCHHHhc--CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc------ccccccccceee
Confidence 999999999954444455 7999999999999999888888876 7899999999988764 245689999999
Q ss_pred eecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCC
Q 004020 244 LHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDA 323 (779)
Q Consensus 244 L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 323 (779)
+++|.+++. ...++|+.|++++|++... |... .++|+.|+|++|++++. +.+.. ..+...+...
T Consensus 193 l~~n~l~~~----~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~-~~l~~--------l~~L~~L~Ls 256 (390)
T 3o6n_A 193 VSYNLLSTL----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT-AWLLN--------YPGLVEVDLS 256 (390)
T ss_dssp CCSSCCSEE----ECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC-GGGGG--------CTTCSEEECC
T ss_pred ccccccccc----CCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCccc-HHHcC--------CCCccEEECC
Confidence 999998863 2346899999999999854 4433 57999999999999864 21100 0111111110
Q ss_pred CcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccC
Q 004020 324 GVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSG 403 (779)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~ 403 (779)
.+..... ....+...++|+.|+|++|++++ +|..+..+++|++|+|++
T Consensus 257 ~n~l~~~-------------------------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 257 YNELEKI-------------------------------MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp SSCCCEE-------------------------------ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred CCcCCCc-------------------------------ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence 0000000 00112234467777777777775 555666777777777777
Q ss_pred ccccccCCccCCCCCCCCceeccCCcccccCCC-CCCcceeeeCCCCCCCC
Q 004020 404 NELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN-FRQNVIVKTDGNPDIGK 453 (779)
Q Consensus 404 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~-~~~~~~~~~~~n~~~~~ 453 (779)
|+++ .+|..+..+++|++|+|++|+++..... +.....+.+.+|++.|.
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred Ccce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 7777 5666677777777777777777654322 33444666777777664
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.6e-30 Score=280.07 Aligned_cols=213 Identities=21% Similarity=0.361 Sum_probs=148.2
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.++++|+++++++.. ++ .+..+++|++|+|++|++++.++ +.++++|++|++++|.++.++ .|..+++|++|+|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence 367777777777763 44 37777788888888887776555 777777888888888777764 47777788888888
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGD 223 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~ 223 (779)
+|++.+ ++. +..+++|+.|++++|.....++. +. .+++|++|++++|.+++..+ +.. .+|+.|++++|.+.
T Consensus 119 ~n~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~--~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 119 EDNISD--ISP-LANLTKMYSLNLGANHNLSDLSP-LS--NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp TSCCCC--CGG-GTTCTTCCEEECTTCTTCCCCGG-GT--TCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred CCcccC--chh-hccCCceeEEECCCCCCcccccc-hh--hCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 887765 333 77777788888877755544444 43 57777788888777775433 333 56777777777665
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccc
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
... .+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 191 ~~~-----~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 191 DIS-----PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCG-----GGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ccc-----cccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 432 25567777777777777776554 6667777777777777775433 7777777777777777764
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3e-30 Score=275.73 Aligned_cols=280 Identities=20% Similarity=0.277 Sum_probs=234.5
Q ss_pred CCCcceeeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecC
Q 004020 52 DPCKWKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFD 120 (779)
Q Consensus 52 ~~C~w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~ 120 (779)
..|.|+.+.|+.. ..++.|+|++|++++..+..|..+++|++|+|++|++++..| .|.++++|++|+|+
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3478999999742 368999999999998877789999999999999999998876 89999999999999
Q ss_pred CCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEe--ecCCCccCCCCCcccEEEccCCC
Q 004020 121 DNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITG--TIPDFLGGDTIPGLMHLHLAFNF 198 (779)
Q Consensus 121 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~l~~L~~L~L~~N~ 198 (779)
+|+++.+|...+ ++|++|++++|++.+ ..+..|.++++|+.|++++|.++. ..+..+. .+++|++|++++|+
T Consensus 109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 109 KNQLKELPEKMP---KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADTN 182 (330)
T ss_dssp SSCCSBCCSSCC---TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG--GCTTCCEEECCSSC
T ss_pred CCcCCccChhhc---ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhcc--CCCCcCEEECCCCc
Confidence 999999988755 799999999999976 566789999999999999999963 6677776 78999999999999
Q ss_pred CCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccC
Q 004020 199 LQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVP 277 (779)
Q Consensus 199 l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p 277 (779)
++ .+|..+ .++|+.|+|++|++++..| .+..+++|+.|++++|++++..+
T Consensus 183 l~-~l~~~~----------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 183 IT-TIPQGL----------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp CC-SCCSSC----------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cc-cCCccc----------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 98 455433 2689999999999999877 48899999999999999998888
Q ss_pred hhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCC
Q 004020 278 SSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPC 357 (779)
Q Consensus 278 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (779)
..+..+++|+.|+|++|+++ .+|..+
T Consensus 234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l----------------------------------------------------- 259 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNKLV-KVPGGL----------------------------------------------------- 259 (330)
T ss_dssp TTGGGSTTCCEEECCSSCCS-SCCTTT-----------------------------------------------------
T ss_pred hhccCCCCCCEEECCCCcCc-cCChhh-----------------------------------------------------
Confidence 89999999999999999998 344321
Q ss_pred CCCCCccccCCCCCeEEEEccCccccccccccccc------cccCCeEeccCccccc--cCCccCCCCCCCCceeccCCc
Q 004020 358 NSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSR------LTSLRQLMLSGNELTG--TIPKELTTLPSLEMLDVSNNH 429 (779)
Q Consensus 358 ~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~------l~~L~~L~Ls~N~l~g--~iP~~l~~l~~L~~L~Ls~N~ 429 (779)
...++|++|+|++|++++..+..|.. .+.|+.|+|++|.+.. ..|..+..+.+|+.++|++|+
T Consensus 260 ---------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ---------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ---------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ---------ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 11237899999999999877777754 3778999999999863 456788899999999999985
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2e-30 Score=279.32 Aligned_cols=281 Identities=23% Similarity=0.355 Sum_probs=240.9
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 64 SNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 64 ~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
-.++++|++++|++++ +++ +..+++|++|+|++|.++.. +.+.++++|++|++++|+++.+++ +..+++|++|++
T Consensus 65 ~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred cCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEEC
Confidence 3579999999999995 444 99999999999999999864 679999999999999999999877 889999999999
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCC
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKG 222 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~ 222 (779)
++|.... .+..+..+++|++|++++|.+++..+ +. .+++|++|++++|.+++..+ +.. .+|+.|++++|.+
T Consensus 140 ~~n~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 140 GANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP--IA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp TTCTTCC--CCGGGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCCCCcc--cccchhhCCCCcEEEecCCCcCCchh--hc--cCCCCCEEEccCCccccccc--ccCCCccceeecccCCC
Confidence 9997654 34559999999999999999986544 54 78999999999999985443 444 6899999999987
Q ss_pred CCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCC
Q 004020 223 DSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPK 302 (779)
Q Consensus 223 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 302 (779)
..... +..+++|+.|+|++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++. +.
T Consensus 212 ~~~~~-----~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~ 282 (347)
T 4fmz_A 212 TDITP-----VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SV 282 (347)
T ss_dssp CCCGG-----GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GG
T ss_pred CCCch-----hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hh
Confidence 75432 6789999999999999998766 88999999999999999864 5789999999999999998753 11
Q ss_pred CCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccc
Q 004020 303 FNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGL 382 (779)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 382 (779)
....++|+.|+|++|.+
T Consensus 283 ---------------------------------------------------------------~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 283 ---------------------------------------------------------------LNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp ---------------------------------------------------------------GGGCTTCSEEECCSSCC
T ss_pred ---------------------------------------------------------------hcCCCCCCEEECcCCcC
Confidence 11124799999999999
Q ss_pred cccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCccc
Q 004020 383 SGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLF 431 (779)
Q Consensus 383 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 431 (779)
++..|..|+.+++|++|+|++|++++..| +..+++|++||+++|+|+
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999999999999999999997666 889999999999999985
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.1e-29 Score=284.73 Aligned_cols=301 Identities=24% Similarity=0.375 Sum_probs=235.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.+++.|++++|.+++..+ +..+++|++|+|++|++++.++ +.++++|++|++++|+++.++. +..+++|++|+++
T Consensus 90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG 164 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE
T ss_pred ccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC
Confidence 579999999999996654 9999999999999999998765 9999999999999999999763 8889999999997
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGD 223 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~ 223 (779)
|.+.. . ..+.++++|+.|++++|.+++. + .+. .+++|++|++++|++++..| ++. .+|+.|++++|.+.
T Consensus 165 -~~~~~--~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 165 -NQVTD--L-KPLANLTTLERLDISSNKVSDI-S-VLA--KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp -ESCCC--C-GGGTTCTTCCEEECCSSCCCCC-G-GGG--GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred -CcccC--c-hhhccCCCCCEEECcCCcCCCC-h-hhc--cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 45543 2 2388899999999999998753 3 344 68899999999999987665 433 67899999988876
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
.. ..+..+++|+.|+|++|.+++.++ +..+++|++|++++|++++..| +..+++|+.|+|++|++++..| .
T Consensus 235 ~~-----~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~ 305 (466)
T 1o6v_A 235 DI-----GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-I 305 (466)
T ss_dssp CC-----GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-G
T ss_pred cc-----hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-h
Confidence 53 356778899999999999987665 7888899999999999986544 8888999999999999887654 1
Q ss_pred CCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcccc
Q 004020 304 NSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLS 383 (779)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 383 (779)
... .++..+....+...+ . ......++|+.|++++|.++
T Consensus 306 ~~l--------~~L~~L~L~~n~l~~-------------------------------~--~~~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 306 SNL--------KNLTYLTLYFNNISD-------------------------------I--SPVSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp GGC--------TTCSEEECCSSCCSC-------------------------------C--GGGGGCTTCCEEECCSSCCC
T ss_pred cCC--------CCCCEEECcCCcCCC-------------------------------c--hhhccCccCCEeECCCCccC
Confidence 111 111111111110000 0 00123458999999999999
Q ss_pred ccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccC
Q 004020 384 GTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKV 434 (779)
Q Consensus 384 g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~i 434 (779)
+. ..+.++++|+.|+|++|++++.+| +..+++|+.|++++|++++..
T Consensus 345 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 345 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred Cc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 85 478999999999999999998888 899999999999999999853
No 65
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.97 E-value=2.7e-30 Score=275.07 Aligned_cols=178 Identities=23% Similarity=0.366 Sum_probs=157.6
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
..++|++.+.||+|+||.||+|+. .+|+.||+|++..........+++.+|+++++.++||||+++++++...+..|+|
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 456899999999999999999987 5799999999987766666778899999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+++..
T Consensus 93 ~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 164 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHG-----RMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFGFSNEF 164 (328)
T ss_dssp ECCCTTCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTCCGGG
T ss_pred EECCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeeccCceec
Confidence 99999999999986543 48899999999999999999997 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCcccccccccccCCC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETSGM 776 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~ 776 (779)
.... .....+||+.|+|||++.+....
T Consensus 165 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~ 191 (328)
T 3fe3_A 165 TVGG---KLDAFCGAPPYAAPELFQGKKYD 191 (328)
T ss_dssp SSSC---GGGTTSSSGGGCCHHHHHTCCCC
T ss_pred CCCC---ccccccCCcceeCcccccCCCcC
Confidence 5432 23456799999999999876543
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=9.5e-30 Score=282.91 Aligned_cols=330 Identities=20% Similarity=0.220 Sum_probs=177.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCc-------------cEEecCCCCCCCCCcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSL-------------QEVLFDDNNFTSVPSD 130 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L-------------~~L~l~~N~l~~~~~~ 130 (779)
.++++|++++|++ |.+|++|+++++|++|++++|++.|.+| .++++++| ++|++++|.++++|..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 4677777777777 6777777777777777777777776665 56666543 5566666665555441
Q ss_pred cccCCCCccEEEcccCCCCCCCCcccc----------------cCC-CCCceEeccCceeEeecCCCccCCCCCcccEEE
Q 004020 131 FFKGLTSLQTISLDYNSFDSWVIPESL----------------KDA-TGLQRFSANGANITGTIPDFLGGDTIPGLMHLH 193 (779)
Q Consensus 131 ~~~~l~~L~~L~Ls~N~l~~~~~p~~~----------------~~l-~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~ 193 (779)
.++|++|++++|++.+ +|..+ ..+ ++|++|++++|++++ +| .++ .+++|++|+
T Consensus 90 ----~~~L~~L~l~~n~l~~--lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~--~l~~L~~L~ 159 (454)
T 1jl5_A 90 ----PPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQ--NSSFLKIID 159 (454)
T ss_dssp ----CTTCSEEECCSSCCSS--CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCT--TCTTCCEEE
T ss_pred ----cCCCCEEEccCCcCCc--cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccC--CCCCCCEEE
Confidence 2344455554444443 22211 011 567777777777775 66 354 677788888
Q ss_pred ccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccc
Q 004020 194 LAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLT 273 (779)
Q Consensus 194 L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~ 273 (779)
+++|++++ +|..+ .+|++|++++|++... + .++.+++|+.|++++|++++. |.+ .++|++|++++|+++
T Consensus 160 l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~l-~----~~~~l~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP--PSLEFIAAGNNQLEEL-P----ELQNLPFLTAIYADNNSLKKL-PDL--PLSLESIVAGNNILE 228 (454)
T ss_dssp CCSSCCSC-CCCCC--TTCCEEECCSSCCSSC-C----CCTTCTTCCEEECCSSCCSSC-CCC--CTTCCEEECCSSCCS
T ss_pred CCCCcCcc-cCCCc--ccccEEECcCCcCCcC-c----cccCCCCCCEEECCCCcCCcC-CCC--cCcccEEECcCCcCC
Confidence 88887774 55544 3677788877776652 1 356778888888888888763 332 257888888888887
Q ss_pred cccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCC----Cchhccc
Q 004020 274 GIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVG----YPAVLAE 349 (779)
Q Consensus 274 ~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 349 (779)
.+|. ++.+++|++|++++|++++..+.......+++ ..|.+.. ...... .+..+.-....+. .+..+..
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l--~~N~l~~--l~~~~~-~L~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNV--RDNYLTD--LPELPQ-SLTFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEEC--CSSCCSC--CCCCCT-TCCEEECCSSCCSEESCCCTTCCE
T ss_pred -cccc-cCCCCCCCEEECCCCcCCcccccccccCEEEC--CCCcccc--cCcccC-cCCEEECcCCccCcccCcCCcCCE
Confidence 5663 78888888888888888863322111111111 1111110 000000 0000000000000 0000100
Q ss_pred ccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCc
Q 004020 350 SWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNH 429 (779)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 429 (779)
..... +...+ .+..+.+|+.|++++|++++ +|.. +++|++|+|++|+++ .+|. .+++|++|+|++|+
T Consensus 302 L~l~~----N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 302 LNASS----NEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp EECCS----SCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred EECcC----CcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCC
Confidence 00110 11111 11223578888888888886 6654 578888888888888 5776 46788888888888
Q ss_pred ccc--cCCC
Q 004020 430 LFG--KVPN 436 (779)
Q Consensus 430 l~g--~iP~ 436 (779)
++| .+|.
T Consensus 369 l~~l~~ip~ 377 (454)
T 1jl5_A 369 LREFPDIPE 377 (454)
T ss_dssp CSSCCCCCT
T ss_pred CCcCCCChH
Confidence 888 6775
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=5e-29 Score=277.31 Aligned_cols=312 Identities=17% Similarity=0.160 Sum_probs=231.3
Q ss_pred CccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcc
Q 004020 76 NIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPE 155 (779)
Q Consensus 76 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~ 155 (779)
++.+..+..++++++|++|+|++|.|++. |.+..+++|++|+|++|++++++ +..+++|++|+|++|++.+ ++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~--~~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN--LD- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC--CC-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce--ee-
Confidence 44455666789999999999999999986 58999999999999999999985 8899999999999999987 33
Q ss_pred cccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCCCCCCCchhhhc
Q 004020 156 SLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGDSKLNGSVAVIQ 234 (779)
Q Consensus 156 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~ 234 (779)
++++++|++|++++|++++ +| ++ .+++|++|+|++|++++. + ++. .+|+.|++++|...... .+.
T Consensus 102 -~~~l~~L~~L~L~~N~l~~-l~--~~--~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-----~~~ 167 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTK-LD--VS--QNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-----DVT 167 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CC--CT--TCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-----CCT
T ss_pred -cCCCCcCCEEECCCCcCCe-ec--CC--CCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-----ccc
Confidence 8999999999999999997 44 54 799999999999999974 3 544 67999999999644333 256
Q ss_pred CCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccC
Q 004020 235 NMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKG 314 (779)
Q Consensus 235 ~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~ 314 (779)
.+++|+.|+|++|++++. | +..+++|+.|++++|++++. .+..+++|+.|+|++|++++ +| ......+..
T Consensus 168 ~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~--- 237 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTY--- 237 (457)
T ss_dssp TCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSE---
T ss_pred cCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCE---
Confidence 789999999999999985 3 88899999999999999975 48999999999999999998 44 221111111
Q ss_pred CCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccc
Q 004020 315 SNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLT 394 (779)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~ 394 (779)
+....+...+.. ...... .....+ ...+|+.|++++|.+.|.+| ++.++
T Consensus 238 -----L~l~~N~l~~~~---~~~l~~--------------------L~~L~l-~~n~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 238 -----FDCSVNPLTELD---VSTLSK--------------------LTTLHC-IQTDLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp -----EECCSSCCSCCC---CTTCTT--------------------CCEEEC-TTCCCSCCCCTTCTTCCEEE--CTTCT
T ss_pred -----EEeeCCcCCCcC---HHHCCC--------------------CCEEec-cCCCCCEEECCCCccCCccc--ccccc
Confidence 111111000000 000000 000000 11256777888888888777 56788
Q ss_pred cCCeEeccCccccccCCcc--------CCCCCCCCceeccCCcccccCCC--CCCcceeeeCCCCC
Q 004020 395 SLRQLMLSGNELTGTIPKE--------LTTLPSLEMLDVSNNHLFGKVPN--FRQNVIVKTDGNPD 450 (779)
Q Consensus 395 ~L~~L~Ls~N~l~g~iP~~--------l~~l~~L~~L~Ls~N~l~g~iP~--~~~~~~~~~~~n~~ 450 (779)
+|+.|+|++|.+.|.+|.. ++.+++|++|+|++|+|+| +|- ......+.+.+|..
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LDVSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CCCTTCTTCSEEECCSSCC
T ss_pred cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cccccCCcCcEEECCCCCC
Confidence 8888888888888777753 4556788888888888888 341 22333455555543
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.5e-30 Score=269.63 Aligned_cols=277 Identities=21% Similarity=0.284 Sum_probs=215.1
Q ss_pred CcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCC--cc
Q 004020 54 CKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVP--SD 130 (779)
Q Consensus 54 C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~--~~ 130 (779)
|.|.+|.|+. ++++ .+|..+. ++|++|+|++|+++..++ .|.++++|++|+|++|+++.+. +.
T Consensus 7 C~~~~l~c~~-----------~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 7 CSGTEIRCNS-----------KGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp EETTEEECCS-----------SCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred eCCCEEEcCC-----------CCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 6787777763 3455 5666554 589999999999987766 5789999999999999998653 44
Q ss_pred cccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecC-CCccCCCCCcccEEEccCCCCCCcCCCcccc
Q 004020 131 FFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIP-DFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK 209 (779)
Q Consensus 131 ~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 209 (779)
.+..+++|++|+|++|.+.. +|..+..+++|+.|++++|++++..+ ..+. .+++|++|+|++|.+++..|..+.
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~- 147 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFN- 147 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESSTTTTTTT--TCTTCCEEECTTSCCEECSTTTTT-
T ss_pred ccccccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCCcccccccchhhh--hccCCCEEECCCCcCCccchhhcc-
Confidence 56678999999999999875 77788999999999999999986655 4554 789999999999999877776654
Q ss_pred CCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccC-CCC-CCCCCCCCcEEEccCCccccccChhhhCCCCCC
Q 004020 210 SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTG-PLP-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLA 287 (779)
Q Consensus 210 ~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~ 287 (779)
.+++|++|+|++|.+++ .+| .+..+++|++|++++|++++..|..+..+++|+
T Consensus 148 -------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 148 -------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp -------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred -------------------------cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 57888899999998887 344 588888999999999999887788888889999
Q ss_pred EEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccC
Q 004020 288 VVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCD 367 (779)
Q Consensus 288 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (779)
.|+|++|++++..+.. ..
T Consensus 203 ~L~L~~N~l~~~~~~~--------------------------------------------------------------~~ 220 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFP--------------------------------------------------------------YK 220 (306)
T ss_dssp EEECTTSCCSBCCSGG--------------------------------------------------------------GT
T ss_pred EEECCCCccCccChhh--------------------------------------------------------------cc
Confidence 9999999887654421 11
Q ss_pred CCCCeEEEEccCccccccccccccccc-cCCeEeccCccccccCC--ccCCCCCCCCceeccCCcccccCCC
Q 004020 368 AGGNITVVNLKNLGLSGTISSNFSRLT-SLRQLMLSGNELTGTIP--KELTTLPSLEMLDVSNNHLFGKVPN 436 (779)
Q Consensus 368 ~~~~L~~L~Ls~n~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~Ls~N~l~g~iP~ 436 (779)
..++|+.|+|++|.+++..|..+..++ +|++|+|++|.+++.-+ ....-+..++.+.+..|.+....|.
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 224788899999999988888888884 89999999999986432 1112234455667777888877776
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.3e-29 Score=277.40 Aligned_cols=201 Identities=19% Similarity=0.244 Sum_probs=166.1
Q ss_pred EEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCC
Q 004020 69 RIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNS 147 (779)
Q Consensus 69 ~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 147 (779)
.++.++++++ .+|..+. ++|++|+|++|+|++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|++|+
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4555566676 6776665 689999999999998877 79999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCC
Q 004020 148 FDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLN 227 (779)
Q Consensus 148 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~ 227 (779)
+.. ..+..|..+++|++|+|++|.++...+..|. .+++|++|+|++|+..+.++...
T Consensus 135 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~-------------------- 191 (452)
T 3zyi_A 135 LTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGA-------------------- 191 (452)
T ss_dssp CSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECCCCTTCCEECTTT--------------------
T ss_pred CCc-cChhhhcccCCCCEEECCCCCcceeCHhHHh--cCCcccEEeCCCCCCccccChhh--------------------
Confidence 976 5666788999999999999999876666775 78999999999855444554321
Q ss_pred CchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCC
Q 004020 228 GSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 228 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
+..+++|+.|+|++|++++. |.+..+++|++|+|++|+|++..|..|.++++|+.|+|++|++++..|
T Consensus 192 -----~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 192 -----FEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp -----TTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred -----ccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 23688999999999999865 678888999999999999998888889888888888888888775544
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8.3e-29 Score=275.41 Aligned_cols=203 Identities=19% Similarity=0.253 Sum_probs=166.9
Q ss_pred EEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 67 VTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 67 v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
...++.++++++ .+|..+. +++++|+|++|+|++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345666777787 7787765 689999999999999886 899999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCC
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSK 225 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~ 225 (779)
|+|.. ..+..|..+++|+.|+|++|.++...+..|. .+++|++|+|++|+..+.++...
T Consensus 122 n~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~------------------ 180 (440)
T 3zyj_A 122 NRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGA------------------ 180 (440)
T ss_dssp SCCSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTT--TCTTCCEEECCCCTTCCEECTTT------------------
T ss_pred CcCCe-eCHhHhhccccCceeeCCCCcccccCHHHhh--hCcccCEeCCCCCCCcceeCcch------------------
Confidence 99986 5566789999999999999999877776775 78899999999865444444321
Q ss_pred CCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCC
Q 004020 226 LNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 226 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
+..+++|++|+|++|+++. +|.+..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+
T Consensus 181 -------~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 181 -------FEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp -------TTTCSSCCEEECTTSCCSS-CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred -------hhcccccCeecCCCCcCcc-ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 2367888899999998884 4577888888888888888888778888888888888888887765444
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.7e-29 Score=286.53 Aligned_cols=281 Identities=22% Similarity=0.276 Sum_probs=234.4
Q ss_pred CCC-CCCCCcceeeEeC------C-CCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEe
Q 004020 47 GWT-DPDPCKWKHIQCS------P-SNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVL 118 (779)
Q Consensus 47 ~w~-~~~~C~w~gv~c~------~-~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 118 (779)
.|. +.+||.|+|..|. . ...++.|++++|+++ .+|..+. ++|++|+|++|+|+.+++ .+++|++|+
T Consensus 14 ~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~ 87 (622)
T 3g06_A 14 AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLE 87 (622)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred HHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEE
Confidence 464 4678999764322 1 235999999999999 8888776 799999999999996555 679999999
Q ss_pred cCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCC
Q 004020 119 FDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNF 198 (779)
Q Consensus 119 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~ 198 (779)
|++|+|+.+|. .+++|++|+|++|++.+ +|. .+++|+.|++++|++++ +|.. +++|++|+|++|+
T Consensus 88 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L~~N~l~~-lp~~-----l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 88 VSGNQLTSLPV----LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWIFGNQLTS-LPVL-----PPGLQELSVSDNQ 152 (622)
T ss_dssp ECSCCCSCCCC----CCTTCCEEEECSCCCCC--CCC---CCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSC
T ss_pred cCCCcCCcCCC----CCCCCCEEECcCCcCCC--CCC---CCCCcCEEECCCCCCCc-CCCC-----CCCCCEEECcCCc
Confidence 99999999987 68999999999999986 555 67899999999999985 5653 5789999999999
Q ss_pred CCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccCh
Q 004020 199 LQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPS 278 (779)
Q Consensus 199 l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 278 (779)
+++ +|..+ .+|+.|++++|.+.... ..+++|+.|+|++|+|++.++. +++|+.|++++|.++ .+|.
T Consensus 153 l~~-l~~~~--~~L~~L~L~~N~l~~l~-------~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~ 218 (622)
T 3g06_A 153 LAS-LPALP--SELCKLWAYNNQLTSLP-------MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA 218 (622)
T ss_dssp CSC-CCCCC--TTCCEEECCSSCCSCCC-------CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred CCC-cCCcc--CCCCEEECCCCCCCCCc-------ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC
Confidence 995 55433 47999999999887643 3578999999999999975543 478999999999998 4664
Q ss_pred hhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCC
Q 004020 279 SLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCN 358 (779)
Q Consensus 279 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (779)
. +++|+.|+|++|+|++. |.
T Consensus 219 ~---~~~L~~L~Ls~N~L~~l-p~-------------------------------------------------------- 238 (622)
T 3g06_A 219 L---PSGLKELIVSGNRLTSL-PV-------------------------------------------------------- 238 (622)
T ss_dssp C---CTTCCEEECCSSCCSCC-CC--------------------------------------------------------
T ss_pred C---CCCCCEEEccCCccCcC-CC--------------------------------------------------------
Confidence 3 47899999999999863 21
Q ss_pred CCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccCCC
Q 004020 359 SDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN 436 (779)
Q Consensus 359 ~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~ 436 (779)
..++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+++|.+|.
T Consensus 239 ---------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 239 ---------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ---------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ---------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 1137999999999999 4666 6789999999999999 8999999999999999999999998875
No 72
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=271.15 Aligned_cols=179 Identities=27% Similarity=0.462 Sum_probs=146.0
Q ss_pred HhhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
.+.++|++.+.||+|+||.||+|+. .+++.||||++...... .....+.+|++++++++||||+++++++...+..++
T Consensus 7 ~l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~-~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~l 85 (347)
T 3zgw_A 7 ELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLG-SDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFM 85 (347)
T ss_dssp TTTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC----CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccc-hHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEE
Confidence 3567899999999999999999986 47999999998765422 234568899999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++++|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+||++++++.+||+|||++..
T Consensus 86 v~E~~~gg~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~kL~DFG~a~~ 157 (347)
T 3zgw_A 86 VLEYCPGGELFDYIISQD-----RLSEEETRVVFRQIVSAVAYVHS---QGYAHRDLKPENLLFDEYHKLKLIDFGLCAK 157 (347)
T ss_dssp EEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEeCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCccHHHEEEcCCCCEEEEeccCccc
Confidence 999999999999986543 58999999999999999999996 8999999999999999999999999999876
Q ss_pred cCCCCCcccccccccCCcccccccccccCC
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
...... ......+||+.|+|||++.+...
T Consensus 158 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~ 186 (347)
T 3zgw_A 158 PKGNKD-YHLQTCCGSLAYAAPELIQGKSY 186 (347)
T ss_dssp ---------------CGGGCCHHHHTTC--
T ss_pred ccCCCC-ccccccCCccCccCHHHHcCCCC
Confidence 544322 12244579999999999987654
No 73
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.96 E-value=8.6e-30 Score=280.70 Aligned_cols=183 Identities=25% Similarity=0.342 Sum_probs=155.2
Q ss_pred eHHHHHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEE
Q 004020 581 SIQVLRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCL 658 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 658 (779)
.+.+++...++|++.++||+|+||.||+|+.. +++.||+|++.+.... ......+.+|..++..++||||+++++++.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 34556666789999999999999999999876 5789999999753211 122234889999999999999999999999
Q ss_pred eCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEE
Q 004020 659 DGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVA 738 (779)
Q Consensus 659 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~ 738 (779)
+.+..|+||||+++|+|.+++.... ..+++..+..++.||+.||+|||+ .+|+||||||+|||++.++++||+
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~~----~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~g~vkL~ 217 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKFE----DRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLA 217 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEEC
T ss_pred eCCEEEEEEecCCCCcHHHHHHHcc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCCCCEEEc
Confidence 9999999999999999999996532 258999999999999999999996 899999999999999999999999
Q ss_pred eeccceecCCCCCcccccccccCCccccccccc
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAA 771 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~ 771 (779)
|||+|+....... ......+||+.|+|||++.
T Consensus 218 DFGla~~~~~~~~-~~~~~~~GT~~Y~APE~l~ 249 (437)
T 4aw2_A 218 DFGSCLKLMEDGT-VQSSVAVGTPDYISPEILQ 249 (437)
T ss_dssp CCTTCEECCTTSC-EECCSCCSCGGGCCHHHHH
T ss_pred chhhhhhcccCCC-cccccccCCcCeeChHHHh
Confidence 9999987655432 2234467999999999987
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.7e-29 Score=261.09 Aligned_cols=251 Identities=20% Similarity=0.262 Sum_probs=218.5
Q ss_pred cEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCC-CCcccccCCCCCceEeccC
Q 004020 92 TVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSW-VIPESLKDATGLQRFSANG 170 (779)
Q Consensus 92 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~p~~~~~l~~L~~L~l~~ 170 (779)
+.++.+++.++..+..+. ++|++|+|++|+++.+++..|.++++|++|+|++|++... ..+..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 578999999987766554 6899999999999999999999999999999999999641 1267788899999999999
Q ss_pred ceeEeecCCCccCCCCCcccEEEccCCCCCCcCC-CccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcc
Q 004020 171 ANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIP-LSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSF 249 (779)
Q Consensus 171 n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 249 (779)
|.++. +|..+. .+++|++|+|++|++++..+ ..+ ..+++|++|+|++|.+
T Consensus 88 n~i~~-l~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~--------------------------~~l~~L~~L~l~~n~l 138 (306)
T 2z66_A 88 NGVIT-MSSNFL--GLEQLEHLDFQHSNLKQMSEFSVF--------------------------LSLRNLIYLDISHTHT 138 (306)
T ss_dssp CSEEE-EEEEEE--TCTTCCEEECTTSEEESSTTTTTT--------------------------TTCTTCCEEECTTSCC
T ss_pred Ccccc-ChhhcC--CCCCCCEEECCCCcccccccchhh--------------------------hhccCCCEEECCCCcC
Confidence 99984 666665 69999999999999986544 233 3689999999999999
Q ss_pred cCCCCC-CCCCCCCcEEEccCCcccc-ccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCccc
Q 004020 250 TGPLPD-LSGLSSLQDFSVRDNQLTG-IVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVAC 327 (779)
Q Consensus 250 ~~~~~~-~~~l~~L~~L~l~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (779)
++.++. +..+++|++|++++|.+.+ .+|..+..+++|++|+|++|++++..|..+..
T Consensus 139 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------- 197 (306)
T 2z66_A 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--------------------- 197 (306)
T ss_dssp EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---------------------
T ss_pred CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC---------------------
Confidence 998885 8899999999999999987 68999999999999999999999877753321
Q ss_pred CccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCcccc
Q 004020 328 DGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELT 407 (779)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 407 (779)
.++|+.|+|++|.+++..+..+..+++|++|+|++|+++
T Consensus 198 -----------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 198 -----------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp -----------------------------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred -----------------------------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 237999999999999988888999999999999999999
Q ss_pred ccCCccCCCCC-CCCceeccCCcccccCC
Q 004020 408 GTIPKELTTLP-SLEMLDVSNNHLFGKVP 435 (779)
Q Consensus 408 g~iP~~l~~l~-~L~~L~Ls~N~l~g~iP 435 (779)
+.+|..+..++ +|++|+|++|++++..+
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99999999995 99999999999988643
No 75
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.96 E-value=3e-29 Score=267.79 Aligned_cols=175 Identities=29% Similarity=0.427 Sum_probs=151.1
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++++... .......+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 367999999999999999999876 689999999976432 233456788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++++||+|||+++..
T Consensus 84 ~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 155 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-----VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEG 155 (337)
T ss_dssp EECCTTCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred EeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeeccchhhc
Confidence 99999999999886542 57899999999999999999996 89999999999999999999999999999864
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... .....+||+.|+|||++.+.
T Consensus 156 ~~~~~--~~~~~~gt~~y~aPE~~~~~ 180 (337)
T 1o6l_A 156 ISDGA--TMKTFCGTPEYLAPEVLEDN 180 (337)
T ss_dssp CCTTC--CBCCCEECGGGCCGGGGSSS
T ss_pred ccCCC--cccccccChhhCChhhhcCC
Confidence 33221 23456799999999998764
No 76
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.96 E-value=2.6e-29 Score=266.01 Aligned_cols=180 Identities=28% Similarity=0.393 Sum_probs=150.5
Q ss_pred hhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
+.++|++.+.||+|+||.||+|+..+++.||+|++............+.+|++++++++||||+++++++.+.+..++||
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 45789999999999999999999988999999999765544445577899999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++ ++.+++.... ..+++..+..++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 99 e~~~~-~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 170 (311)
T 3niz_A 99 EFMEK-DLKKVLDENK----TGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLARAFG 170 (311)
T ss_dssp ECCSE-EHHHHHHTCT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEETT
T ss_pred cCCCC-CHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcCceecC
Confidence 99985 7888775433 258899999999999999999996 899999999999999999999999999998765
Q ss_pred CCCCcccccccccCCcccccccccccCCCC
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
.... ......||+.|+|||++.+...++
T Consensus 171 ~~~~--~~~~~~~t~~y~aPE~~~~~~~~~ 198 (311)
T 3niz_A 171 IPVR--SYTHEVVTLWYRAPDVLMGSKKYS 198 (311)
T ss_dssp SCCC-----CCCCCCTTCCHHHHTTCCSCC
T ss_pred CCcc--cccCCcccCCcCCHHHhcCCCCCC
Confidence 4322 223457899999999998755544
No 77
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.96 E-value=9.8e-30 Score=270.69 Aligned_cols=187 Identities=41% Similarity=0.784 Sum_probs=159.0
Q ss_pred eHHHHHHhhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC
Q 004020 581 SIQVLRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG 660 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 660 (779)
.+.++....++|++.+.||+|+||.||+|+.++++.||+|++.... ....+.+.+|++++++++||||+++++++...
T Consensus 30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES--SQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC--SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 3344556778999999999999999999998889999999987553 34557899999999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEee
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADF 740 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DF 740 (779)
+..++||||+++++|.+++...... ...+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+||+||
T Consensus 108 ~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Df 183 (321)
T 2qkw_B 108 NEMILIYKYMENGNLKRHLYGSDLP-TMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDF 183 (321)
T ss_dssp TCCEEEEECCTTCBTGGGSSSSCCC-SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCCEEECCC
T ss_pred CeEEEEEEcCCCCcHHHHHhccCCC-ccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCCEEEeec
Confidence 9999999999999999998654322 2358999999999999999999996 89999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccCCccccccccccc
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+++...............||+.|+|||++.+.
T Consensus 184 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 216 (321)
T 2qkw_B 184 GISKKGTELDQTHLSTVVKGTLGYIDPEYFIKG 216 (321)
T ss_dssp TTCEECSSSSCCCCBCCCEEETTTCCHHHHHHC
T ss_pred ccccccccccccccccccCCCccccCHHHhcCC
Confidence 999875443222233445699999999998654
No 78
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.96 E-value=1e-29 Score=277.98 Aligned_cols=183 Identities=27% Similarity=0.349 Sum_probs=154.9
Q ss_pred HHHHHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEe
Q 004020 582 IQVLRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD 659 (779)
Q Consensus 582 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 659 (779)
+++++...++|++.+.||+|+||.||+|+.. +++.||+|++.+... .....+.+.+|+.+++.++||||+++++++.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 3455556789999999999999999999876 588999999875321 11223457899999999999999999999999
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEe
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVAD 739 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~D 739 (779)
.+..|+||||+++|+|.+++... .+++..+..++.||+.||+|||+ ++|+||||||+|||++.++++||+|
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~~------~~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~D 211 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSNY------DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLAD 211 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECC
T ss_pred CCEEEEEEeCCCCCcHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCCEEEec
Confidence 99999999999999999988543 47899999999999999999997 8999999999999999999999999
Q ss_pred eccceecCCCCCcccccccccCCcccccccccccC
Q 004020 740 FGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 740 FG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
||+|+....... ......+||+.|+|||++.+..
T Consensus 212 FG~a~~~~~~~~-~~~~~~~gt~~Y~APE~l~~~~ 245 (410)
T 3v8s_A 212 FGTCMKMNKEGM-VRCDTAVGTPDYISPEVLKSQG 245 (410)
T ss_dssp CTTCEECCTTSE-EECCSCCSCGGGCCHHHHHTTT
T ss_pred cceeEeeccCCc-ccccCCcCCccccCHHHhhccC
Confidence 999987654322 2233567999999999997654
No 79
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=273.04 Aligned_cols=178 Identities=22% Similarity=0.265 Sum_probs=150.9
Q ss_pred hcCCcccceecccccEEEEEEE------EcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC---CCccceEeeEEEe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGE------LHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR---HRHLVGLLGYCLD 659 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~ 659 (779)
.++|.+.+.||+|+||.||+|. ..+++.||+|++.... ..++.+|+++++.++ |+||+++++++..
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN-----PWEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC-----HHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC-----hhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 4679999999999999999993 4468999999986542 346778888888887 9999999999999
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC--------
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD-------- 731 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~-------- 731 (779)
.+..++||||+++|+|.+++..........+++..++.|+.||+.||+|||+ ++|+||||||+|||++.
T Consensus 139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~~~~~~~~ 215 (365)
T 3e7e_A 139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGFLEQDDE 215 (365)
T ss_dssp SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGGGTCC---
T ss_pred CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEecccccCcccc
Confidence 9999999999999999999976554444569999999999999999999996 89999999999999998
Q ss_pred ---CCcEEEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 732 ---DMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 732 ---~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
++.+||+|||+|+..............+||+.|||||++.+..
T Consensus 216 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 261 (365)
T 3e7e_A 216 DDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKP 261 (365)
T ss_dssp ---CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCC
T ss_pred ccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCC
Confidence 8999999999998764332333345567999999999998754
No 80
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=269.54 Aligned_cols=175 Identities=29% Similarity=0.450 Sum_probs=146.7
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l 665 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|+++.... .....+.+.+|.++++.+ +||||+++++++.+.+..|+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 468999999999999999999875 689999999976532 233456788999999988 69999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+|||++.++++||+|||+|+.
T Consensus 102 v~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~DFG~a~~ 173 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKSR-----RFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKE 173 (353)
T ss_dssp EEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEccccceee
Confidence 999999999999986543 58999999999999999999996 8999999999999999999999999999986
Q ss_pred cCCCCCcccccccccCCccccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... ......+||+.|+|||++.+.
T Consensus 174 ~~~~~--~~~~~~~gt~~y~aPE~~~~~ 199 (353)
T 3txo_A 174 GICNG--VTTATFCGTPDYIAPEILQEM 199 (353)
T ss_dssp SCC-----------CCGGGCCHHHHHHH
T ss_pred cccCC--ccccccCCCcCeEChhhcCCC
Confidence 43322 223456799999999998654
No 81
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.96 E-value=5.6e-29 Score=269.82 Aligned_cols=181 Identities=28% Similarity=0.477 Sum_probs=153.2
Q ss_pred hcCCcccceecccccEEEEEEEEc--------CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH--------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLD 659 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~ 659 (779)
.++|++.+.||+|+||.||+|+.. ++..||+|+++... .....+++.+|+++++++ +||||+++++++..
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 158 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA-TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 158 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC-BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc-CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence 468999999999999999999752 35679999997553 345667899999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccC-----------CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEE
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEE-----------GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNIL 728 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIl 728 (779)
.+..|+||||+++|+|.+++...... ....+++..++.++.||+.||+|||+ ++|+||||||+|||
T Consensus 159 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIl 235 (370)
T 2psq_A 159 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVL 235 (370)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchhhEE
Confidence 99999999999999999999765421 12357899999999999999999996 89999999999999
Q ss_pred EcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 729 LGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 729 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++.++.+||+|||+++...............||+.|+|||++.+.
T Consensus 236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 280 (370)
T 2psq_A 236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDR 280 (370)
T ss_dssp ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTC
T ss_pred ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCC
Confidence 999999999999999877554333333445678999999998654
No 82
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.96 E-value=8.3e-29 Score=260.26 Aligned_cols=174 Identities=26% Similarity=0.433 Sum_probs=151.2
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
..++|++.+.||+|+||.||+|+. .+++.||+|++..... ...+.+.+|+.++++++||||+++++++...+..++|
T Consensus 18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 95 (297)
T 3fxz_A 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (297)
T ss_dssp GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccc--cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence 356899999999999999999975 4789999999875442 2346788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++... .+++..+..++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~e~~~~~~L~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~ 166 (297)
T 3fxz_A 96 MEYLAGGSLTDVVTET------CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI 166 (297)
T ss_dssp EECCTTCBHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EECCCCCCHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 9999999999998543 47899999999999999999997 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCcccccccccccC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
..... ......||+.|+|||++.+..
T Consensus 167 ~~~~~--~~~~~~gt~~y~aPE~~~~~~ 192 (297)
T 3fxz_A 167 TPEQS--KRSTMVGTPYWMAPEVVTRKA 192 (297)
T ss_dssp CSTTC--CBCCCCSCGGGCCHHHHHCSC
T ss_pred CCccc--ccCCccCCcCccChhhhcCCC
Confidence 54322 234457999999999987653
No 83
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.96 E-value=3e-29 Score=266.80 Aligned_cols=179 Identities=26% Similarity=0.409 Sum_probs=150.8
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++..... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 5 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 83 (323)
T 3tki_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (323)
T ss_dssp TTTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred HhhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc-cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 4578999999999999999999876 789999999865432 22335688999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++..
T Consensus 84 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 155 (323)
T 3tki_A 84 LEYCSGGELFDRIEPD-----IGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF 155 (323)
T ss_dssp EECCTTEEGGGGSBTT-----TBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEcCCCCcHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeecccee
Confidence 9999999999988543 258999999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCcccccccccccCC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
.............||+.|+|||++.+...
T Consensus 156 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 184 (323)
T 3tki_A 156 RYNNRERLLNKMCGTLPYVAPELLKRREF 184 (323)
T ss_dssp EETTEECCBCSCCSCGGGSCHHHHHCSSB
T ss_pred ccCCcccccCCCccCcCccCcHHhccCCC
Confidence 44333233345679999999999876543
No 84
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=270.29 Aligned_cols=174 Identities=26% Similarity=0.414 Sum_probs=151.3
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccc-cChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAV-VSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ......+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 367999999999999999999875 58899999987543 2223456788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++..
T Consensus 94 ~e~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~~~ 165 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQN-----VHFKEETVKLFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAAML 165 (384)
T ss_dssp ECCCTTEEHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEECCCCCEEEeccceeeec
Confidence 9999999999998643 258999999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.... .....+||+.|+|||++.+.
T Consensus 166 ~~~~---~~~~~~gt~~Y~aPE~~~~~ 189 (384)
T 4fr4_A 166 PRET---QITTMAGTKPYMAPEMFSSR 189 (384)
T ss_dssp CTTC---CBCCCCSCGGGCCGGGTCCC
T ss_pred cCCC---ceeccCCCccccCCeeeccC
Confidence 5432 23456799999999999754
No 85
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=275.53 Aligned_cols=184 Identities=26% Similarity=0.330 Sum_probs=156.2
Q ss_pred eHHHHHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEE
Q 004020 581 SIQVLRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCL 658 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 658 (779)
.+++.+...++|++.+.||+|+||.||+|+.+ +++.||+|++.+... .....+.+.+|..++..++||||+++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 44555566789999999999999999999875 789999999975432 1223345889999999999999999999999
Q ss_pred eCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEE
Q 004020 659 DGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVA 738 (779)
Q Consensus 659 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~ 738 (779)
+.+..|+||||+++|+|.+++.... ..+++..+..++.||+.||+|||+ .+|+||||||+|||++.++++||+
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l~~~~----~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g~vkL~ 204 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLLSKFG----ERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHIRLA 204 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHHS----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEEC
T ss_pred eCCEEEEEEcCCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCCCEEEe
Confidence 9999999999999999999996542 258899999999999999999996 899999999999999999999999
Q ss_pred eeccceecCCCCCcccccccccCCcccccccccc
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
|||+++....... ......+||+.|+|||++.+
T Consensus 205 DFGla~~~~~~~~-~~~~~~~Gt~~Y~APE~l~~ 237 (412)
T 2vd5_A 205 DFGSCLKLRADGT-VRSLVAVGTPDYLSPEILQA 237 (412)
T ss_dssp CCTTCEECCTTSC-EECSSCCSCGGGCCHHHHHH
T ss_pred echhheeccCCCc-cccceeccccCcCCHHHHhh
Confidence 9999987755322 12234579999999999874
No 86
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=260.26 Aligned_cols=176 Identities=28% Similarity=0.487 Sum_probs=150.0
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|.+.+.||+|+||.||+|+.. +++.||+|++... .....+.+.+|++++++++||||+++++++.+++..++||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 86 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF--DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFIT 86 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEE
Confidence 357899999999999999999875 6899999988543 3556678999999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++++|.+++.... ..+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 87 e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 159 (310)
T 3s95_A 87 EYIKGGTLRGIIKSMD----SQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMV 159 (310)
T ss_dssp ECCTTCBHHHHHHHCC----TTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCEECC
T ss_pred EecCCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeecccceecc
Confidence 9999999999996532 258999999999999999999997 899999999999999999999999999998764
Q ss_pred CCCCcc------------cccccccCCccccccccccc
Q 004020 748 DNGKHS------------IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~------------~~~~~~gt~~y~APE~l~~~ 773 (779)
...... ......||+.|+|||++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 197 (310)
T 3s95_A 160 DEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGR 197 (310)
T ss_dssp --------------------CCCCSCGGGCCHHHHTTC
T ss_pred cccccccccccccccccccccccCCCcceeCHHHhcCC
Confidence 432211 01145799999999998764
No 87
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.96 E-value=6.6e-29 Score=270.02 Aligned_cols=176 Identities=25% Similarity=0.421 Sum_probs=149.7
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh-hHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE-KGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l 665 (779)
.++|++.++||+|+||.||+|+.. +++.||+|++++..... ...+.+.+|..++.++ +||||+++++++.+.+..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 467999999999999999999876 57899999998654332 2335678899999887 79999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+|||++.++++||+|||+|+.
T Consensus 131 V~E~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DFGla~~ 202 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE 202 (396)
T ss_dssp EEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEEcCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEeecceeee
Confidence 999999999999986543 58999999999999999999996 8999999999999999999999999999986
Q ss_pred cCCCCCcccccccccCCcccccccccccC
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
..... ......+||+.|+|||++.+..
T Consensus 203 ~~~~~--~~~~~~~gt~~Y~aPE~l~~~~ 229 (396)
T 4dc2_A 203 GLRPG--DTTSTFCGTPNYIAPEILRGED 229 (396)
T ss_dssp CCCTT--CCBCCCCBCGGGCCHHHHTTCC
T ss_pred cccCC--CccccccCCcccCCchhhcCCC
Confidence 43322 2234568999999999997653
No 88
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.96 E-value=9.1e-29 Score=259.42 Aligned_cols=178 Identities=23% Similarity=0.349 Sum_probs=151.7
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
++|++.+.||+|+||.||+|+.. +++.||+|++............+.+|++++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57999999999999999999875 68999999998665555566788999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
|+++ ++.+++.... ..+++..+..++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++....
T Consensus 82 ~~~~-~l~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 153 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCN----GDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGI 153 (292)
T ss_dssp CCSE-EHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCS
T ss_pred cCCC-CHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccceecCC
Confidence 9975 5656554322 258999999999999999999997 8999999999999999999999999999987654
Q ss_pred CCCcccccccccCCcccccccccccCCCC
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
... ......||+.|+|||++.+...++
T Consensus 154 ~~~--~~~~~~~t~~y~aPE~~~~~~~~~ 180 (292)
T 3o0g_A 154 PVR--CYSAEVVTLWYRPPDVLFGAKLYS 180 (292)
T ss_dssp CCS--CCCSCCSCGGGCCHHHHTTCSCCC
T ss_pred ccc--cccCCccccCCcChHHHcCCCCcC
Confidence 322 224457899999999998765444
No 89
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.96 E-value=3.6e-29 Score=266.97 Aligned_cols=193 Identities=43% Similarity=0.781 Sum_probs=162.7
Q ss_pred eeeeHHHHHHhhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEE
Q 004020 578 MVISIQVLRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYC 657 (779)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~ 657 (779)
..++++++....++|++.+.||+|+||.||+|+..+++.||+|++..... ......+.+|+++++.++||||+++++++
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC------CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccC-chHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 46788999999999999999999999999999988899999999875432 12223688999999999999999999999
Q ss_pred EeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEE
Q 004020 658 LDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKV 737 (779)
Q Consensus 658 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl 737 (779)
...+..++||||+++|+|.+++...... ...+++..+..++.|++.||+|||+.+..+|+||||||+||+++.++.+||
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPES-QPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTT-CCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred ecCCceEEEEEeccCCCHHHHHHhcccc-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence 9999999999999999999999765432 335899999999999999999999732239999999999999999999999
Q ss_pred EeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 738 ADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 738 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+|||+++....... .......||+.|+|||++.+.
T Consensus 176 ~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~ 210 (326)
T 3uim_A 176 GDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTG 210 (326)
T ss_dssp CCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHHHS
T ss_pred ccCccccccCcccc-cccccccCCcCccCHHHhccC
Confidence 99999987654322 223445699999999998653
No 90
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.96 E-value=1.3e-28 Score=265.26 Aligned_cols=175 Identities=27% Similarity=0.376 Sum_probs=151.4
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh----hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE----KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
+.++|++.+.||+|+||.||+|+.. +|+.||+|++....... ...+.+.+|+.++++++||||+++++++.+.+.
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 89 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD 89 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence 4578999999999999999999876 68999999997654322 134678999999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC----cEEEE
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM----RAKVA 738 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~----~~kl~ 738 (779)
.++||||+++|+|.+++... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++ .+||+
T Consensus 90 ~~lv~e~~~gg~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~vkl~ 161 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQK-----ESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLI 161 (361)
T ss_dssp EEEEEECCCSCBHHHHHTTC-----SCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred EEEEEEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccCEEEE
Confidence 99999999999999998543 258999999999999999999997 8999999999999998776 79999
Q ss_pred eeccceecCCCCCcccccccccCCccccccccccc
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|||+++...... ......||+.|+|||++.+.
T Consensus 162 DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~ 193 (361)
T 2yab_A 162 DFGLAHEIEDGV---EFKNIFGTPEFVAPEIVNYE 193 (361)
T ss_dssp CCSSCEECCTTC---CCCCCCSCGGGCCHHHHTTC
T ss_pred ecCCceEcCCCC---ccccCCCCccEECchHHcCC
Confidence 999998775432 12345799999999998764
No 91
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.96 E-value=3.7e-29 Score=261.88 Aligned_cols=178 Identities=27% Similarity=0.392 Sum_probs=148.7
Q ss_pred cCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEEe
Q 004020 590 NNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYEY 669 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 669 (779)
++|++.+.||+|+||.||+|+..+++.||+|++..........+.+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57999999999999999999988899999999976543333446788999999999999999999999999999999999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCCC
Q 004020 670 MPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDN 749 (779)
Q Consensus 670 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 749 (779)
+++ +|.+++.... ..+++..+..++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+++.....
T Consensus 82 ~~~-~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 153 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCE----GGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIP 153 (288)
T ss_dssp CSE-EHHHHHHTST----TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred cCC-CHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccccccCcc
Confidence 975 8988885432 257899999999999999999997 89999999999999999999999999999866432
Q ss_pred CCcccccccccCCcccccccccccCCCC
Q 004020 750 GKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 750 ~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
.. ......||+.|+|||++.+...++
T Consensus 154 ~~--~~~~~~~t~~y~aPE~~~~~~~~~ 179 (288)
T 1ob3_A 154 VR--KYTHEIVTLWYRAPDVLMGSKKYS 179 (288)
T ss_dssp ----------CCCTTCCHHHHTTCCSCC
T ss_pred cc--ccccccccccccCchheeCCCCCC
Confidence 11 123456899999999997765444
No 92
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.96 E-value=1.3e-28 Score=265.98 Aligned_cols=176 Identities=26% Similarity=0.449 Sum_probs=153.4
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
.+.++|++.+.||+|+||.||+|... +++.||+|++..........+.+.+|++++++++||||+++++++.+.+..|+
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 35678999999999999999999875 68999999998766566667889999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC---CcEEEEeecc
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD---MRAKVADFGL 742 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~---~~~kl~DFG~ 742 (779)
||||+++|+|.+++..+ ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.+ +.+||+|||+
T Consensus 106 v~e~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~ 177 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVAR-----EFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGL 177 (362)
T ss_dssp EECCCCSCBHHHHHTTC-----SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEecCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEeecCc
Confidence 99999999999988543 258899999999999999999997 899999999999999865 4599999999
Q ss_pred ceecCCCCCcccccccccCCccccccccccc
Q 004020 743 VRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++...... ......||+.|+|||++.+.
T Consensus 178 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~ 205 (362)
T 2bdw_A 178 AIEVNDSE---AWHGFAGTPGYLSPEVLKKD 205 (362)
T ss_dssp CBCCTTCC---SCCCSCSCTTTCCHHHHTTC
T ss_pred ceEecCCc---ccccCCCCccccCHHHHccC
Confidence 98765432 22345799999999998764
No 93
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.4e-28 Score=257.00 Aligned_cols=201 Identities=20% Similarity=0.305 Sum_probs=155.7
Q ss_pred EEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 67 VTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 67 v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
.+++++++++++ .+|..+ .++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 367888888888 566654 4689999999999998876 689999999999999999999888899999999999999
Q ss_pred CC-CCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCC
Q 004020 146 NS-FDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDS 224 (779)
Q Consensus 146 N~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~ 224 (779)
|+ +.. ..|..|..+++|+.|++++|.+++..|..+. .+++|++|+|++|++++..+..++
T Consensus 90 n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~---------------- 150 (285)
T 1ozn_A 90 NAQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFR---------------- 150 (285)
T ss_dssp CTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTT----------------
T ss_pred CCCccc-cCHHHhcCCcCCCEEECCCCcCCEECHhHhh--CCcCCCEEECCCCcccccCHhHhc----------------
Confidence 97 654 5577888888888888888888877777775 688888888888888865554444
Q ss_pred CCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCcccccc
Q 004020 225 KLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQ 299 (779)
Q Consensus 225 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 299 (779)
.+++|++|+|++|++++.++. +..+++|++|++++|++++..|..+..+++|+.|+|++|++++.
T Consensus 151 ----------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 151 ----------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp ----------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ----------cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 466677777777777665553 66667777777777777766666777777777777777766643
No 94
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.96 E-value=7.2e-29 Score=262.13 Aligned_cols=180 Identities=32% Similarity=0.536 Sum_probs=146.0
Q ss_pred HhhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
...++|++.+.||+|+||.||+|+. +++.||+|++..........+++.+|++++++++||||+++++++...+..++|
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV 112 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence 3456899999999999999999977 588999999987666666678899999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC--cEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQS--FIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
|||+++++|.+++...... ..+++..++.++.||+.||+|||+ .+ |+||||||+||+++.++.+||+|||+++
T Consensus 113 ~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 187 (309)
T 3p86_A 113 TEYLSRGSLYRLLHKSGAR--EQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR 187 (309)
T ss_dssp EECCTTCBHHHHHHSTTHH--HHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTCCGGGEEECTTCCEEECCCC---
T ss_pred EecCCCCcHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCCChhhEEEeCCCcEEECCCCCCc
Confidence 9999999999998654321 248899999999999999999996 77 9999999999999999999999999997
Q ss_pred ecCCCCCcccccccccCCcccccccccccC
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
...... .......||+.|+|||++.+..
T Consensus 188 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~ 215 (309)
T 3p86_A 188 LKASTF--LSSKSAAGTPEWMAPEVLRDEP 215 (309)
T ss_dssp ----------------CCTTSCHHHHTTCC
T ss_pred cccccc--cccccCCCCccccChhhhcCCC
Confidence 654321 1223457999999999987653
No 95
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.96 E-value=1.2e-28 Score=263.55 Aligned_cols=180 Identities=29% Similarity=0.435 Sum_probs=148.3
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC-----
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN----- 661 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----- 661 (779)
..++|++.+.||+|+||.||+|+.. +++.||||++.... .....+.+.+|++++++++||||+++++++.+..
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 82 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ 82 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS-TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC-chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence 4568999999999999999999876 79999999997543 3345578999999999999999999999986643
Q ss_pred ----------------------------------------------------eEEEEEEecCCCChhhHhhhcccCCCCC
Q 004020 662 ----------------------------------------------------ERLLVYEYMPQGTLSRHLFNRKEEGLKP 689 (779)
Q Consensus 662 ----------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~~~ 689 (779)
..++||||+++++|.+++...... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~--~~ 160 (332)
T 3qd2_B 83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL--ED 160 (332)
T ss_dssp HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG--GG
T ss_pred hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc--cc
Confidence 279999999999999999765432 34
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCCCCCc----------ccccccc
Q 004020 690 LEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDNGKH----------SIETRLA 759 (779)
Q Consensus 690 ~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~----------~~~~~~~ 759 (779)
.++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+++........ .......
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV 237 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence 5777889999999999999996 89999999999999999999999999999877554211 1223457
Q ss_pred cCCccccccccccc
Q 004020 760 GTFGYLAPEYAAET 773 (779)
Q Consensus 760 gt~~y~APE~l~~~ 773 (779)
||+.|+|||++.+.
T Consensus 238 gt~~y~aPE~~~~~ 251 (332)
T 3qd2_B 238 GTKLYMSPEQIHGN 251 (332)
T ss_dssp -CGGGSCHHHHHCC
T ss_pred CCcCccChHHhcCC
Confidence 99999999998764
No 96
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=273.21 Aligned_cols=177 Identities=23% Similarity=0.358 Sum_probs=152.8
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
.+.++|++.+.||+|+||.||+|... +++.||+|++..........+.+.+|++++++++||||+++++++.+.+..|+
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 45678999999999999999999764 78999999998766555666789999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEc---CCCcEEEEeecc
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLG---DDMRAKVADFGL 742 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~---~~~~~kl~DFG~ 742 (779)
||||+++|+|.+++..+. .+++..+..++.||+.||+|||+ ++|+||||||+||+++ +++.+||+|||+
T Consensus 88 v~E~~~gg~L~~~i~~~~-----~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL~DFG~ 159 (444)
T 3soa_A 88 IFDLVTGGELFEDIVARE-----YYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGL 159 (444)
T ss_dssp EECCCBCCBHHHHHHHCS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEECCCSS
T ss_pred EEEeCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEEccCce
Confidence 999999999999886542 58999999999999999999997 8999999999999998 468899999999
Q ss_pred ceecCCCCCcccccccccCCccccccccccc
Q 004020 743 VRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++....... ......||+.|+|||++.+.
T Consensus 160 a~~~~~~~~--~~~~~~gt~~Y~APE~l~~~ 188 (444)
T 3soa_A 160 AIEVEGEQQ--AWFGFAGTPGYLSPEVLRKD 188 (444)
T ss_dssp CBCCCTTCC--BCCCSCSCGGGCCHHHHTTC
T ss_pred eEEecCCCc--eeecccCCcccCCHHHhcCC
Confidence 987654322 22446799999999998764
No 97
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.96 E-value=1.5e-28 Score=263.55 Aligned_cols=174 Identities=26% Similarity=0.428 Sum_probs=150.9
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv 666 (779)
++|++.+.||+|+||.||+|+.. +++.||+|++..... .....+.+.+|..+++++ +||||+++++++.+.+..|+|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 57999999999999999999876 688999999976543 334556788999999988 899999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++.... .+++..++.++.||+.||+|||+ ++|+||||||+||+++.++++||+|||+++..
T Consensus 89 ~e~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~ 160 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 160 (345)
T ss_dssp ECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred EeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEeccccccc
Confidence 99999999999986542 58899999999999999999997 89999999999999999999999999999864
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... .....+||+.|+|||++.+.
T Consensus 161 ~~~~~--~~~~~~gt~~y~aPE~~~~~ 185 (345)
T 3a8x_A 161 LRPGD--TTSTFCGTPNYIAPEILRGE 185 (345)
T ss_dssp CCTTC--CBCCCCSCGGGCCHHHHTTC
T ss_pred cCCCC--cccccCCCccccCccccCCC
Confidence 33221 23456799999999998764
No 98
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.96 E-value=1.1e-28 Score=258.97 Aligned_cols=178 Identities=25% Similarity=0.444 Sum_probs=147.6
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccc-cChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAV-VSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++.... ......+.+.+|+.++++++||||+++++++...+..++
T Consensus 9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 88 (294)
T 4eqm_A 9 INERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYL 88 (294)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEE
T ss_pred hhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEE
Confidence 3568999999999999999999865 68999999986543 234456789999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++++|.+++.... .+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++.
T Consensus 89 v~e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~ 160 (294)
T 4eqm_A 89 VMEYIEGPTLSEYIESHG-----PLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKA 160 (294)
T ss_dssp EEECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCSSSTT
T ss_pred EEeCCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCCCccc
Confidence 999999999999986543 58999999999999999999996 8999999999999999999999999999976
Q ss_pred cCCCCCcccccccccCCcccccccccccC
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
...... .......||+.|+|||++.+..
T Consensus 161 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~ 188 (294)
T 4eqm_A 161 LSETSL-TQTNHVLGTVQYFSPEQAKGEA 188 (294)
T ss_dssp C--------------CCSSCCHHHHHTCC
T ss_pred cccccc-cccCccccCccccCHhHhcCCC
Confidence 543321 2223456999999999987654
No 99
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.96 E-value=1.1e-28 Score=261.42 Aligned_cols=172 Identities=30% Similarity=0.463 Sum_probs=150.1
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++...... ....+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 367999999999999999999875 6899999999764321 23456788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++++||+|||+++..
T Consensus 85 ~e~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~ 156 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ-----RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYV 156 (318)
T ss_dssp ECCCCSCBHHHHHHHTS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEEC
T ss_pred EeCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeecCcceec
Confidence 99999999999986532 58899999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
... ....+||+.|+|||++.+.
T Consensus 157 ~~~-----~~~~~gt~~y~aPE~~~~~ 178 (318)
T 1fot_A 157 PDV-----TYTLCGTPDYIAPEVVSTK 178 (318)
T ss_dssp SSC-----BCCCCSCTTTCCHHHHTTC
T ss_pred CCc-----cccccCCccccCHhHhcCC
Confidence 432 2345799999999998764
No 100
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.96 E-value=1.1e-28 Score=265.63 Aligned_cols=180 Identities=23% Similarity=0.383 Sum_probs=151.1
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC---hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS---EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++...... ....+.+.+|+.+++.++||||+++++++.+.+..
T Consensus 22 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 101 (351)
T 3c0i_A 22 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGML 101 (351)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred cccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 3467999999999999999999875 6899999998643211 11356789999999999999999999999999999
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc---EEEEee
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR---AKVADF 740 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~---~kl~DF 740 (779)
|+||||+++++|.+++..+...+ ..+++..+..++.||+.||+|||+ ++|+||||||+||+++.++. +||+||
T Consensus 102 ~lv~e~~~g~~L~~~l~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~vkl~Df 177 (351)
T 3c0i_A 102 YMVFEFMDGADLCFEIVKRADAG-FVYSEAVASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGF 177 (351)
T ss_dssp EEEEECCSSCBHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCCEEECCC
T ss_pred EEEEeCCCCCCHHHHHHHhcccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCcEEEecC
Confidence 99999999999998886654322 357899999999999999999996 89999999999999986554 999999
Q ss_pred ccceecCCCCCcccccccccCCccccccccccc
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+++....... .....+||+.|+|||++.+.
T Consensus 178 g~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~ 208 (351)
T 3c0i_A 178 GVAIQLGESGL--VAGGRVGTPHFMAPEVVKRE 208 (351)
T ss_dssp TTCEECCTTSC--BCCCCCSCGGGCCHHHHTTC
T ss_pred cceeEecCCCe--eecCCcCCcCccCHHHHcCC
Confidence 99987755322 22345799999999998765
No 101
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.96 E-value=9.8e-29 Score=264.51 Aligned_cols=176 Identities=27% Similarity=0.438 Sum_probs=150.3
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 664 (779)
..++|++.+.||+|+||.||+|+.+ +++.||+|+++.... .....+.+.+|..++..+ +||||+++++++.+.+..|
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~ 94 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF 94 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence 4578999999999999999999876 689999999976432 123446678899999887 8999999999999999999
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++++||+|||+++
T Consensus 95 lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~ 166 (345)
T 1xjd_A 95 FVMEYLNGGDLMYHIQSCH-----KFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCK 166 (345)
T ss_dssp EEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEEeEChhhh
Confidence 9999999999999986542 58899999999999999999997 899999999999999999999999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...... ......+||+.|+|||++.+.
T Consensus 167 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~ 193 (345)
T 1xjd_A 167 ENMLGD--AKTNTFCGTPDYIAPEILLGQ 193 (345)
T ss_dssp CCCCTT--CCBCCCCSCGGGCCHHHHTTC
T ss_pred hcccCC--CcccCCCCCcccCChhhhcCC
Confidence 643321 123456799999999998765
No 102
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=6.4e-28 Score=249.74 Aligned_cols=219 Identities=21% Similarity=0.346 Sum_probs=196.9
Q ss_pred CCCCcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCc
Q 004020 51 PDPCKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPS 129 (779)
Q Consensus 51 ~~~C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 129 (779)
.|.|.|.|+.|.....++.+++++++++ .+|..+. ++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 4889999999987777889999999999 5787665 689999999999998887 79999999999999999999999
Q ss_pred ccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc
Q 004020 130 DFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK 209 (779)
Q Consensus 130 ~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 209 (779)
..|.++++|++|+|++|++.. ..+..|..+++|++|++++|++++..+..+. .+++|++|+|++|+|++..+..++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~- 154 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFD--SLTKLTYLSLGYNELQSLPKGVFD- 154 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTT-
T ss_pred hhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhC--cCcCCCEEECCCCcCCccCHhHcc-
Confidence 999999999999999999986 5667889999999999999999988777776 799999999999999965554443
Q ss_pred CCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhhCCCCCCE
Q 004020 210 SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAV 288 (779)
Q Consensus 210 ~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~ 288 (779)
.+++|+.|+|++|++++.++. +..+++|++|++++|++++..+..+..+++|+.
T Consensus 155 -------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 155 -------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp -------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred -------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 689999999999999998875 889999999999999999877778999999999
Q ss_pred EEccCccccccCC
Q 004020 289 VNLTNNLFQGQTP 301 (779)
Q Consensus 289 L~Ls~N~l~g~~p 301 (779)
|+|++|++.+..+
T Consensus 210 L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 210 LQLQENPWDCTCN 222 (270)
T ss_dssp EECCSSCBCCSSS
T ss_pred EEecCCCeeCCCc
Confidence 9999999987554
No 103
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.96 E-value=1.4e-28 Score=261.71 Aligned_cols=172 Identities=29% Similarity=0.433 Sum_probs=147.2
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC----eEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN----ERL 664 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~ 664 (779)
.++|++.+.||+|+||.||+|+.. ++.||||++.... .......+|+.++++++||||+++++++.... ..+
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 98 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD---KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLW 98 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc---hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEE
Confidence 357999999999999999999876 7999999986542 33445667999999999999999999998754 369
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC----------CcEEcCCCCCCEEEcCCCc
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQ----------SFIHRDLKPSNILLGDDMR 734 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~----------~ivHrDlkp~NIll~~~~~ 734 (779)
+||||+++|+|.+++... .+++..++.++.||+.||+|||+ . +|+||||||+||+++.++.
T Consensus 99 lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~qi~~al~~LH~---~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~ 169 (322)
T 3soc_A 99 LITAFHEKGSLSDFLKAN------VVSWNELCHIAETMARGLAYLHE---DIPGLKDGHKPAISHRDIKSKNVLLKNNLT 169 (322)
T ss_dssp EEEECCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHTC---CEEEETTEEECEEECSCCSGGGEEECTTCC
T ss_pred EEEecCCCCCHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHh---hccccccccCCCEEeCCCChHhEEECCCCe
Confidence 999999999999999543 48899999999999999999996 6 9999999999999999999
Q ss_pred EEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 735 AKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 735 ~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+||+|||+++...............||+.|+|||++.+.
T Consensus 170 ~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 208 (322)
T 3soc_A 170 ACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGA 208 (322)
T ss_dssp EEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTC
T ss_pred EEEccCCcccccccccCccccccCccCccccCHhhcccc
Confidence 999999999877654333333446799999999999764
No 104
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.95 E-value=1.4e-28 Score=264.06 Aligned_cols=176 Identities=28% Similarity=0.366 Sum_probs=150.4
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 664 (779)
..++|++.+.||+|+||.||+|+.. +++.||+|++..... .....+.+.+|..++..+ +||+|+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 3568999999999999999999876 478999999976532 223456788999999988 7999999999999999999
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++|+|.+++.... .+++..++.++.||+.||+|||+ ++|+||||||+|||++.++++||+|||+++
T Consensus 98 lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~ 169 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG-----RFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCK 169 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EEEeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEEeCCccc
Confidence 9999999999999986542 48899999999999999999996 899999999999999999999999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
....... .....+||+.|+|||++.+.
T Consensus 170 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~ 196 (353)
T 2i0e_A 170 ENIWDGV--TTKTFCGTPDYIAPEIIAYQ 196 (353)
T ss_dssp CCCCTTC--CBCCCCSCGGGCCHHHHTTC
T ss_pred ccccCCc--ccccccCCccccChhhhcCC
Confidence 6433221 23456799999999998754
No 105
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=2.1e-28 Score=259.90 Aligned_cols=173 Identities=21% Similarity=0.297 Sum_probs=150.4
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|++.+.||+|+||.||+|... +++.||+|.+... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 79 (321)
T 1tki_A 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMI 79 (321)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC---cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence 4678999999999999999999875 6889999998643 23446788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC--CCcEEEEeeccce
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD--DMRAKVADFGLVR 744 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~ 744 (779)
|||+++++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++. ++.+||+|||+++
T Consensus 80 ~e~~~g~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~ 152 (321)
T 1tki_A 80 FEFISGLDIFERINTSA----FELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQAR 152 (321)
T ss_dssp ECCCCCCBHHHHHTSSS----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCE
T ss_pred EEeCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECCCCe
Confidence 99999999999985432 258999999999999999999996 89999999999999987 7899999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...... ......||+.|+|||++.+.
T Consensus 153 ~~~~~~---~~~~~~gt~~y~aPE~~~~~ 178 (321)
T 1tki_A 153 QLKPGD---NFRLLFTAPEYYAPEVHQHD 178 (321)
T ss_dssp ECCTTC---EEEEEESCGGGSCHHHHTTC
T ss_pred ECCCCC---ccccccCChhhcCcHHhcCC
Confidence 875432 22345799999999998764
No 106
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.95 E-value=2e-28 Score=271.28 Aligned_cols=181 Identities=27% Similarity=0.380 Sum_probs=150.1
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC-----C
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG-----N 661 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~ 661 (779)
+.++|++.+.||+|+||.||+|+.. +++.||||++..........+++.+|++++++++||||+++++++... +
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 4578999999999999999999865 688999999987655556678899999999999999999999999876 5
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..|+||||++ ++|.+++... ..+++..+..++.||+.||+|||+ .+|+||||||+|||++.++.+||+|||
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~~-----~~l~~~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL~DFG 174 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKTP-----IFLTEEHIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKVCDFG 174 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHSS-----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred eEEEEEecCC-cCHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEEccCC
Confidence 6899999986 5999988543 258999999999999999999997 899999999999999999999999999
Q ss_pred cceecCCCCCc--------------------ccccccccCCcccccccccccCCCC
Q 004020 742 LVRLAPDNGKH--------------------SIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 742 ~a~~~~~~~~~--------------------~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+|+........ ...+..+||+.|+|||++.....++
T Consensus 175 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~ 230 (432)
T 3n9x_A 175 LARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYT 230 (432)
T ss_dssp TCEEC-------------------------------CCCCCTTCCHHHHTTCSCCC
T ss_pred CcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCC
Confidence 99876543211 1124568999999999976555554
No 107
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.95 E-value=6.6e-28 Score=254.80 Aligned_cols=190 Identities=42% Similarity=0.717 Sum_probs=162.6
Q ss_pred eeeeHHHHHHhhcCCccc------ceecccccEEEEEEEEcCCcEEEEEEecccc--cChhHHHHHHHHHHHHHcCCCCc
Q 004020 578 MVISIQVLRNVTNNFSEE------NVLGRGGFGTVYKGELHDGTKIAVKRMESAV--VSEKGFAEFKSEIAVLTKVRHRH 649 (779)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~------~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~n 649 (779)
..+++.++..++++|... +.||+|+||.||+|.. +++.||+|++.... ......+.+.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 467889999999998877 8999999999999986 58899999987543 22344577999999999999999
Q ss_pred cceEeeEEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE
Q 004020 650 LVGLLGYCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL 729 (779)
Q Consensus 650 iv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll 729 (779)
|+++++++.+.+..++||||+++++|.+++..... ...+++..++.++.||+.||+|||+ .+|+||||||+||++
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nili 166 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDG--TPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILL 166 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGG--CCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEE
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCCCHHHEEE
Confidence 99999999999999999999999999999865432 2358999999999999999999996 899999999999999
Q ss_pred cCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 730 GDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 730 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+.++.+||+|||+++...............||+.|+|||++.+.
T Consensus 167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~ 210 (307)
T 2nru_A 167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGE 210 (307)
T ss_dssp CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTE
T ss_pred cCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCC
Confidence 99999999999999876544333333445799999999998764
No 108
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.95 E-value=1.9e-28 Score=263.10 Aligned_cols=172 Identities=28% Similarity=0.370 Sum_probs=150.7
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..... .....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 368999999999999999999875 689999999975432 223456788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+++..
T Consensus 120 ~e~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~ 191 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIG-----RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191 (350)
T ss_dssp EECCTTCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EcCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEcccccceec
Confidence 99999999999986542 48899999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
... ....+||+.|+|||++.+.
T Consensus 192 ~~~-----~~~~~gt~~y~aPE~~~~~ 213 (350)
T 1rdq_E 192 KGR-----TWTLCGTPEALAPEIILSK 213 (350)
T ss_dssp SSC-----BCCCEECGGGCCHHHHTTC
T ss_pred cCC-----cccccCCccccCHHHhcCC
Confidence 432 2345799999999998764
No 109
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.95 E-value=1.1e-28 Score=276.03 Aligned_cols=181 Identities=25% Similarity=0.373 Sum_probs=139.8
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC-----C
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG-----N 661 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~ 661 (779)
+.++|++.+.||+|+||.||+|+.. +++.||||++..........+++.+|++++++++||||+++++++... .
T Consensus 51 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 130 (458)
T 3rp9_A 51 IPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD 130 (458)
T ss_dssp SCTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred cCCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence 3468999999999999999999765 789999999976655566678899999999999999999999998543 5
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..|+||||++ ++|.+++... ..+++..+..++.||+.||+|||+ .+|+||||||+|||++.++.+||+|||
T Consensus 131 ~~~lv~e~~~-~~L~~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl~DFG 201 (458)
T 3rp9_A 131 ELYVVLEIAD-SDFKKLFRTP-----VYLTELHIKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCDFG 201 (458)
T ss_dssp CEEEEECCCS-EEHHHHHHSS-----CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred eEEEEEeccc-cchhhhcccC-----CCCCHHHHHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEeecccc
Confidence 6899999984 6898888543 258999999999999999999997 899999999999999999999999999
Q ss_pred cceecCCCCCc-------------------------ccccccccCCcccccccccccCCCC
Q 004020 742 LVRLAPDNGKH-------------------------SIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 742 ~a~~~~~~~~~-------------------------~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+|+........ ...+..+||+.|+|||++.....++
T Consensus 202 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~ 262 (458)
T 3rp9_A 202 LARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYT 262 (458)
T ss_dssp TCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCC
T ss_pred cchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCC
Confidence 99876432110 1224467899999999876555444
No 110
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.95 E-value=3.9e-28 Score=258.04 Aligned_cols=182 Identities=25% Similarity=0.383 Sum_probs=154.6
Q ss_pred eeeHHHHHHhhcC----------CcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCC
Q 004020 579 VISIQVLRNVTNN----------FSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRH 647 (779)
Q Consensus 579 ~~~~~~~~~~~~~----------~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h 647 (779)
.++.++++.+.+. |+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h 101 (321)
T 2c30_A 24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRK--QQRRELLFNEVVIMRDYQH 101 (321)
T ss_dssp -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT--CCSHHHHHHHHHHHTTCCC
T ss_pred cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccc--hhHHHHHHHHHHHHHhCCC
Confidence 3566666665543 777889999999999999876 79999999987543 2345678899999999999
Q ss_pred CccceEeeEEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCE
Q 004020 648 RHLVGLLGYCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNI 727 (779)
Q Consensus 648 ~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NI 727 (779)
|||+++++++...+..++||||+++++|.+++... .+++..+..++.||+.||+|||+ .+|+||||||+||
T Consensus 102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~------~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NI 172 (321)
T 2c30_A 102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV------RLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSI 172 (321)
T ss_dssp TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGE
T ss_pred CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHE
Confidence 99999999999999999999999999999988432 48999999999999999999997 8999999999999
Q ss_pred EEcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 728 LLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 728 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+++.++.+||+|||+++....... ......||+.|+|||++.+.
T Consensus 173 ll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~ 216 (321)
T 2c30_A 173 LLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRS 216 (321)
T ss_dssp EECTTCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTC
T ss_pred EECCCCcEEEeeeeeeeecccCcc--ccccccCCccccCHhhhcCC
Confidence 999999999999999987654321 22445799999999998654
No 111
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.95 E-value=1.9e-28 Score=261.13 Aligned_cols=175 Identities=29% Similarity=0.476 Sum_probs=140.1
Q ss_pred hcCCcccceecccccEEEEEEEE----cCCcEEEEEEecccccC--hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL----HDGTKIAVKRMESAVVS--EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
.++|++.+.||+|+||.||+|+. .+++.||+|+++..... ......+.+|+++++.++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46799999999999999999987 47899999999765321 2334567899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecc
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGL 742 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~ 742 (779)
.|+||||+++++|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~Dfg~ 167 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-----IFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGL 167 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEEECCCSC
T ss_pred EEEEEeCCCCCcHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEEEEeCCc
Confidence 999999999999999986542 47889999999999999999997 8999999999999999999999999999
Q ss_pred ceecCCCCCcccccccccCCccccccccccc
Q 004020 743 VRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++....... ......||+.|+|||++.+.
T Consensus 168 ~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~ 196 (327)
T 3a62_A 168 CKESIHDGT--VTHTFCGTIEYMAPEILMRS 196 (327)
T ss_dssp C------------CTTSSCCTTSCHHHHTTS
T ss_pred ccccccCCc--cccccCCCcCccCHhhCcCC
Confidence 876433221 22345799999999998764
No 112
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.9e-28 Score=261.31 Aligned_cols=175 Identities=27% Similarity=0.441 Sum_probs=150.2
Q ss_pred hcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccCh-hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSE-KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|.+.+.||+|+||.||+|+. .+++.||+|++....... .....+.+|+++++.++||||+++++++...+..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 46899999999999999999987 578999999987543222 2235788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+ +|+|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+||++++++.+||+|||+++..
T Consensus 88 ~E~~-~g~l~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~ 158 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK-----RMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIM 158 (336)
T ss_dssp ECCC-CEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSSCTBTT
T ss_pred EECC-CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEeccceec
Confidence 9999 689988886543 58899999999999999999996 89999999999999999999999999999866
Q ss_pred CCCCCcccccccccCCcccccccccccCC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
.... .....+||+.|+|||++.+...
T Consensus 159 ~~~~---~~~~~~gt~~y~aPE~~~~~~~ 184 (336)
T 3h4j_B 159 TDGN---FLKTSCGSPNYAAPEVINGKLY 184 (336)
T ss_dssp TTSB---TTCCCTTSTTTSCGGGSCCSGG
T ss_pred cCCc---ccccccCCcCcCCHHHHcCCCC
Confidence 5432 2234579999999999987653
No 113
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.95 E-value=2.9e-28 Score=266.42 Aligned_cols=182 Identities=32% Similarity=0.472 Sum_probs=143.6
Q ss_pred HHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEEeCC--
Q 004020 586 RNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCLDGN-- 661 (779)
Q Consensus 586 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~-- 661 (779)
..+.++|++.+.||+|+||.||+|... +++.||+|++..........+++.+|+.+++.+. ||||+++++++...+
T Consensus 5 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~ 84 (388)
T 3oz6_A 5 RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDR 84 (388)
T ss_dssp HHHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSS
T ss_pred CcccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCC
Confidence 356789999999999999999999764 6899999999766555666778899999999997 999999999998654
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..|+||||++ ++|.+++... .+++..+..++.||+.||+|||+ .+|+||||||+|||++.++.+||+|||
T Consensus 85 ~~~lv~e~~~-~~L~~~~~~~------~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG 154 (388)
T 3oz6_A 85 DVYLVFDYME-TDLHAVIRAN------ILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKVADFG 154 (388)
T ss_dssp CEEEEEECCS-EEHHHHHHHT------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEecccC-cCHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEecCCc
Confidence 6899999997 5898888542 47889999999999999999997 899999999999999999999999999
Q ss_pred cceecCCCCC-------------------cccccccccCCcccccccccccCCCC
Q 004020 742 LVRLAPDNGK-------------------HSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 742 ~a~~~~~~~~-------------------~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+|+....... ....+..+||+.|+|||++.+...++
T Consensus 155 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ 209 (388)
T 3oz6_A 155 LSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYT 209 (388)
T ss_dssp TCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCC
T ss_pred ccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCC
Confidence 9987543110 11223467999999999998765554
No 114
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.95 E-value=3.8e-28 Score=265.66 Aligned_cols=179 Identities=18% Similarity=0.283 Sum_probs=154.3
Q ss_pred hcCCcccceeccc--ccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 589 TNNFSEENVLGRG--GFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 589 ~~~~~~~~~lg~G--~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
.++|++.+.||+| +||.||+|+.. +++.||||++..........+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3579999999999 99999999876 69999999998776666667789999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++++|.+++..... ..+++..+..++.||+.||+|||+ .+|+||||||+|||++.++.+||+|||.+..
T Consensus 104 v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~ 177 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFM---DGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLS 177 (389)
T ss_dssp EEECCTTCBHHHHHHHTCT---TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred EEEccCCCCHHHHHhhhcc---cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEccccccee
Confidence 9999999999999865432 258899999999999999999997 8999999999999999999999999999875
Q ss_pred cCCCCCc-----ccccccccCCccccccccccc
Q 004020 746 APDNGKH-----SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~-----~~~~~~~gt~~y~APE~l~~~ 773 (779)
....+.. .......||+.|+|||++.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 210 (389)
T 3gni_B 178 MISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQN 210 (389)
T ss_dssp CEETTEECSCBCCCCTTCTTTGGGSCHHHHSTT
T ss_pred eccccccccccccccccccccccccCHHHHhcc
Confidence 4332111 112234789999999999874
No 115
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=256.23 Aligned_cols=174 Identities=30% Similarity=0.359 Sum_probs=145.8
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.++||+|+||.||+|+.. +++.||||++...........+...|+..+.++ +||||+++++++.+++..++|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 467999999999999999999876 799999999876554555555666677666665 899999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+ +++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+|||++.++.+||+|||+++..
T Consensus 136 ~e~~-~~~L~~~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~ 207 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAWG----ASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL 207 (311)
T ss_dssp EECC-CCBHHHHHHHHC----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCTTCEEC
T ss_pred Eecc-CCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccceeeeec
Confidence 9999 678988886543 258999999999999999999997 79999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.... ......||+.|+|||++.+.
T Consensus 208 ~~~~---~~~~~~gt~~y~aPE~~~~~ 231 (311)
T 3p1a_A 208 GTAG---AGEVQEGDPRYMAPELLQGS 231 (311)
T ss_dssp C---------CCCCCGGGCCGGGGGTC
T ss_pred ccCC---CCcccCCCccccCHhHhcCC
Confidence 5432 22345699999999998763
No 116
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.95 E-value=3e-28 Score=258.63 Aligned_cols=182 Identities=26% Similarity=0.389 Sum_probs=138.5
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... .....+.+.+|++++++++||||+++++++..++..++||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 82 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS-EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF 82 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCS-TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc-ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence 468999999999999999999765 68999999987543 2223467889999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccC-CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 668 EYMPQGTLSRHLFNRKEE-GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
||++ ++|.+++...... ....+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++..
T Consensus 83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 158 (317)
T 2pmi_A 83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLARAF 158 (317)
T ss_dssp ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCSSCEET
T ss_pred EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECcCccceec
Confidence 9998 5999988665322 22358899999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCcccccccccccCCCC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
..... ......||+.|+|||++.+...++
T Consensus 159 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~ 187 (317)
T 2pmi_A 159 GIPVN--TFSSEVVTLWYRAPDVLMGSRTYS 187 (317)
T ss_dssp TSCCC--CCCCCCSCCTTCCHHHHTTCCCCC
T ss_pred CCCcc--cCCCCcccccccCchHhhCCCCCC
Confidence 53321 223457899999999998755444
No 117
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=255.49 Aligned_cols=175 Identities=31% Similarity=0.476 Sum_probs=143.8
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh------------------------hHHHHHHHHHHHHH
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE------------------------KGFAEFKSEIAVLT 643 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~------------------------~~~~~~~~E~~~l~ 643 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++....... ...+++.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 368999999999999999999865 68899999986543211 12356889999999
Q ss_pred cCCCCccceEeeEEEe--CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcC
Q 004020 644 KVRHRHLVGLLGYCLD--GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRD 721 (779)
Q Consensus 644 ~l~h~niv~~~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrD 721 (779)
+++||||+++++++.+ .+..++||||+++++|.+++.. ..+++..++.++.||+.||+|||+ .+|+|||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~D 162 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL------KPLSEDQARFYFQDLIKGIEYLHY---QKIIHRD 162 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS------SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccC
Confidence 9999999999999987 5678999999999999876421 258999999999999999999997 7999999
Q ss_pred CCCCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 722 LKPSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 722 lkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
|||+||+++.++.+||+|||+++....... ......||+.|+|||++.+..
T Consensus 163 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~ 213 (298)
T 2zv2_A 163 IKPSNLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETR 213 (298)
T ss_dssp CCGGGEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTC
T ss_pred CCHHHEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCC
Confidence 999999999999999999999987654321 223457999999999987654
No 118
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.95 E-value=4e-28 Score=258.46 Aligned_cols=177 Identities=27% Similarity=0.451 Sum_probs=147.4
Q ss_pred hcCCcccceecccccEEEEEEEEc----CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH----DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 664 (779)
.++|++.+.||+|+||.||+|+.. .+..||||+++... .....+.+.+|++++++++||||+++++++.+.+..+
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 126 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY-TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAM 126 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccE
Confidence 467999999999999999999874 35569999997543 3455678999999999999999999999999999999
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++
T Consensus 127 lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 199 (325)
T 3kul_A 127 IVTEYMENGSLDTFLRTHD----GQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199 (325)
T ss_dssp EEEECCTTCBHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCSSCE
T ss_pred EEeeCCCCCcHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECCCCccc
Confidence 9999999999999985432 258999999999999999999997 899999999999999999999999999998
Q ss_pred ecCCCCCc-ccccccccCCccccccccccc
Q 004020 745 LAPDNGKH-SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~-~~~~~~~gt~~y~APE~l~~~ 773 (779)
........ .......+|+.|+|||++.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 229 (325)
T 3kul_A 200 VLEDDPDAAYTTTGGKIPIRWTAPEAIAFR 229 (325)
T ss_dssp ECC----CCEECC---CCGGGSCHHHHHHC
T ss_pred ccccCccceeeccCCCCcccccCHhHhcCC
Confidence 76543221 122334567899999998654
No 119
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.95 E-value=5.9e-28 Score=257.24 Aligned_cols=175 Identities=26% Similarity=0.389 Sum_probs=150.5
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh----hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE----KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++....... ...+.+.+|+.++++++||||+++++++.+.+.
T Consensus 9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 88 (326)
T 2y0a_A 9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD 88 (326)
T ss_dssp HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence 4467999999999999999999875 68999999987654221 135678999999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC----cEEEE
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM----RAKVA 738 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~----~~kl~ 738 (779)
.++||||+++++|.+++... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++ .+||+
T Consensus 89 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~ 160 (326)
T 2y0a_A 89 VILILELVAGGELFDFLAEK-----ESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKII 160 (326)
T ss_dssp EEEEEECCCSCBHHHHHTTS-----SCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSSSCCEEEC
T ss_pred EEEEEEcCCCCCHHHHHHhc-----CCcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHHHEEEecCCCCCCCEEEE
Confidence 99999999999999998543 258999999999999999999996 8999999999999999887 89999
Q ss_pred eeccceecCCCCCcccccccccCCccccccccccc
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|||+++....... .....||+.|+|||++.+.
T Consensus 161 Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~ 192 (326)
T 2y0a_A 161 DFGLAHKIDFGNE---FKNIFGTPEFVAPEIVNYE 192 (326)
T ss_dssp CCTTCEECCTTSC---CCCCCSCTTTCCHHHHTTC
T ss_pred ECCCCeECCCCCc---cccccCCcCcCCceeecCC
Confidence 9999987654321 2345799999999998654
No 120
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.95 E-value=5.5e-28 Score=255.94 Aligned_cols=179 Identities=24% Similarity=0.335 Sum_probs=148.0
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..........+.+.+|++++++++||||+++++++...+..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 468999999999999999999875 5899999998766545555677899999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++++|.+++... ..+++..+..++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 82 e~~~~~~l~~~~~~~-----~~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 153 (311)
T 4agu_A 82 EYCDHTVLHELDRYQ-----RGVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGFARLLT 153 (311)
T ss_dssp ECCSEEHHHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred EeCCCchHHHHHhhh-----cCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCCchhcc
Confidence 999999998877443 258899999999999999999996 899999999999999999999999999998765
Q ss_pred CCCCcccccccccCCcccccccccccCCCC
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
.... ......||+.|+|||++.+...++
T Consensus 154 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~ 181 (311)
T 4agu_A 154 GPSD--YYDDEVATRWYRSPELLVGDTQYG 181 (311)
T ss_dssp --------------GGGCCHHHHHTCSCCC
T ss_pred Cccc--ccCCCcCCccccChHHHhcCCCCC
Confidence 4322 223457899999999997755544
No 121
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.95 E-value=2.5e-29 Score=269.28 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=139.6
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEeccccc------ChhHHHHHHHHHHHHHcCC---------CCccceE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVV------SEKGFAEFKSEIAVLTKVR---------HRHLVGL 653 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~---------h~niv~~ 653 (779)
.++|++.+.||+|+||.||+|+. +++.||||++..... .....+.+.+|+++++.++ ||||+++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46789999999999999999987 689999999976532 2233467889999998886 6666666
Q ss_pred eeEEE-----------------e-------------CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHH
Q 004020 654 LGYCL-----------------D-------------GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVA 703 (779)
Q Consensus 654 ~~~~~-----------------~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~ 703 (779)
.+.+. + .+..|+||||+++|++.+.+.+ ..+++..++.++.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~------~~~~~~~~~~i~~qi~ 171 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT------KLSSLATAKSILHQLT 171 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT------TCCCHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh------cCCCHHHHHHHHHHHH
Confidence 66543 2 6789999999999977666632 2478999999999999
Q ss_pred HHHHHHH-cCCCCCcEEcCCCCCCEEEcCCC--------------------cEEEEeeccceecCCCCCcccccccccCC
Q 004020 704 RGVEYLH-GLAHQSFIHRDLKPSNILLGDDM--------------------RAKVADFGLVRLAPDNGKHSIETRLAGTF 762 (779)
Q Consensus 704 ~~L~~LH-~~~~~~ivHrDlkp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~~gt~ 762 (779)
.||+||| + .+|+||||||+|||++.++ .+||+|||+|+..... ..+||+
T Consensus 172 ~aL~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~ 241 (336)
T 2vuw_A 172 ASLAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCD 241 (336)
T ss_dssp HHHHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCC
T ss_pred HHHHHHHHh---CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEee
Confidence 9999999 7 7999999999999999887 8999999999876532 247999
Q ss_pred cccccccccccC
Q 004020 763 GYLAPEYAAETS 774 (779)
Q Consensus 763 ~y~APE~l~~~~ 774 (779)
.|||||++.+..
T Consensus 242 ~y~aPE~~~g~~ 253 (336)
T 2vuw_A 242 VSMDEDLFTGDG 253 (336)
T ss_dssp CTTCSGGGCCCS
T ss_pred cccChhhhcCCC
Confidence 999999998765
No 122
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.95 E-value=2.5e-28 Score=264.13 Aligned_cols=176 Identities=31% Similarity=0.440 Sum_probs=141.5
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHH-HHcCCCCccceEeeEEEeCCeEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAV-LTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
.++|++.+.||+|+||.||+|+.+ +++.||+|++.+.... ......+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 357999999999999999999876 5889999999765432 2334556777776 567899999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+|||++.++++||+|||+++.
T Consensus 117 v~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~ikL~DFG~a~~ 188 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-----CFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKE 188 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCBCGG
T ss_pred EEeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEeeCccccc
Confidence 999999999999986542 47889999999999999999996 8999999999999999999999999999986
Q ss_pred cCCCCCcccccccccCCcccccccccccC
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
..... ......+||+.|+|||++.+..
T Consensus 189 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~ 215 (373)
T 2r5t_A 189 NIEHN--STTSTFCGTPEYLAPEVLHKQP 215 (373)
T ss_dssp GBCCC--CCCCSBSCCCCCCCHHHHTTCC
T ss_pred cccCC--CccccccCCccccCHHHhCCCC
Confidence 43322 1234567999999999987653
No 123
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.95 E-value=7.8e-28 Score=248.92 Aligned_cols=174 Identities=29% Similarity=0.429 Sum_probs=150.8
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
.++|++.+.||+|+||.||+|+..++..||+|++..... ..+++.+|++++++++||||+++++++.+.+..++|||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM---SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE 83 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC---cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence 467999999999999999999999888999999976543 23568899999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
|+++++|.+++..... .+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++....
T Consensus 84 ~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~ 156 (268)
T 3sxs_A 84 YISNGCLLNYLRSHGK----GLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLD 156 (268)
T ss_dssp CCTTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEEECCT
T ss_pred ccCCCcHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCccceecch
Confidence 9999999999866432 48899999999999999999997 8999999999999999999999999999987655
Q ss_pred CCCcccccccccCCccccccccccc
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
... .......+|+.|+|||++.+.
T Consensus 157 ~~~-~~~~~~~~~~~y~aPE~~~~~ 180 (268)
T 3sxs_A 157 DQY-VSSVGTKFPVKWSAPEVFHYF 180 (268)
T ss_dssp TCE-EECCSCCCCGGGCCHHHHHHS
T ss_pred hhh-hcccCCCcCcccCCHHHHhcc
Confidence 422 222344577889999998653
No 124
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.95 E-value=4.9e-28 Score=272.44 Aligned_cols=179 Identities=31% Similarity=0.483 Sum_probs=153.4
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|.+.+.||+|+||.||+|+.. +++.||+|++...... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999875 6999999999765322 23456788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++...... ...+++..++.++.||+.||+|||+ ++|+||||||+||+++.+|++||+|||+++..
T Consensus 264 mE~~~gg~L~~~l~~~~~~-~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~ 339 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDED-NPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVEL 339 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTT-SCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEeccCCCHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEeecceeeec
Confidence 9999999999998654321 2358999999999999999999997 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... .....+||+.|+|||++.+.
T Consensus 340 ~~~~~--~~~~~~GT~~Y~APE~l~~~ 364 (543)
T 3c4z_A 340 KAGQT--KTKGYAGTPGFMAPELLLGE 364 (543)
T ss_dssp CTTCC--CBCCCCSCTTTSCHHHHTTC
T ss_pred cCCCc--ccccccCCccccChhhhcCC
Confidence 54322 22345799999999999764
No 125
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.95 E-value=5.3e-28 Score=269.16 Aligned_cols=176 Identities=30% Similarity=0.470 Sum_probs=152.6
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh-hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE-KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|.+.+.||+|+||.||+|+.. +|+.||||++....... .....+.+|+.+++.++||||+++++++...+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 368999999999999999999876 79999999997543221 2346789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++..
T Consensus 95 ~E~~~gg~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DFG~a~~~ 166 (476)
T 2y94_A 95 MEYVSGGELFDYICKN-----GRLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMM 166 (476)
T ss_dssp EECCSSEEHHHHTTSS-----SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred EeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEeccchhhc
Confidence 9999999999998543 258999999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCcccccccccccCC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
.... .....+||+.|+|||++.+...
T Consensus 167 ~~~~---~~~~~~gt~~y~aPE~~~~~~~ 192 (476)
T 2y94_A 167 SDGE---FLRTSCGSPNYAAPEVISGRLY 192 (476)
T ss_dssp CTTC---CBCCCCSCSTTCCHHHHTTCCB
T ss_pred cccc---cccccCCCcCeEChhhccCCCC
Confidence 5432 2234579999999999987643
No 126
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.95 E-value=7.2e-28 Score=254.30 Aligned_cols=174 Identities=30% Similarity=0.543 Sum_probs=143.3
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
.++|++.+.||+|+||.||+|+.. ..+|+|+++.........+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 358999999999999999999764 46899988766555666788999999999999999999999765 556899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
|+++++|.+++.... ..+++.+++.++.||+.||+|||+ .+|+||||||+||++++++.+||+|||+++....
T Consensus 112 ~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~ 184 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQE----TKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp CCSSCBHHHHHHTSC----CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCSSSEEECTTSCEEECCCCSSCC---
T ss_pred cCCCCcHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCChhhEEEcCCCCEEEccCCCceeccc
Confidence 999999999986432 358999999999999999999997 7999999999999999999999999999986543
Q ss_pred CCCcccccccccCCcccccccccc
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
...........||+.|+|||++..
T Consensus 185 ~~~~~~~~~~~gt~~y~aPE~~~~ 208 (307)
T 3lb7_A 185 WSGSQQVEQPTGSVLWMAPEVIRM 208 (307)
T ss_dssp ---------CCCCTTSCCHHHHHC
T ss_pred ccccccccCCCCCcceECcceeec
Confidence 222223344579999999999863
No 127
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.95 E-value=3.1e-28 Score=252.13 Aligned_cols=173 Identities=31% Similarity=0.489 Sum_probs=149.2
Q ss_pred cCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEEe
Q 004020 590 NNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYEY 669 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 669 (779)
++|++.+.||+|+||.||+|+..+++.||+|++...... .+++.+|++++++++||||+++++++.+.+..++||||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 86 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF 86 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC---HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence 578999999999999999999988999999999765432 35688999999999999999999999999999999999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCCC
Q 004020 670 MPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDN 749 (779)
Q Consensus 670 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 749 (779)
+++++|.+++.... ..+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++.....
T Consensus 87 ~~~~~L~~~l~~~~----~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 159 (269)
T 4hcu_A 87 MEHGCLSDYLRTQR----GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD 159 (269)
T ss_dssp CTTCBHHHHHHTTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred CCCCcHHHHHHhcC----cccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEecccccccccccc
Confidence 99999999985533 258899999999999999999996 89999999999999999999999999999865432
Q ss_pred CCcccccccccCCccccccccccc
Q 004020 750 GKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 750 ~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
. ........||+.|+|||++.+.
T Consensus 160 ~-~~~~~~~~~~~~y~aPE~~~~~ 182 (269)
T 4hcu_A 160 Q-YTSSTGTKFPVKWASPEVFSFS 182 (269)
T ss_dssp H-HHSTTSTTCCGGGCCHHHHHHC
T ss_pred c-cccccCcccccccCCHHHhcCC
Confidence 1 1222344578899999998654
No 128
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.95 E-value=5e-28 Score=272.92 Aligned_cols=176 Identities=32% Similarity=0.494 Sum_probs=151.9
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +|+.||+|++...... ......+.+|++++++++||||+++++++.+.+..|+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999875 7999999999764322 23346688999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++..... ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++++||+|||+++..
T Consensus 263 mEy~~gg~L~~~l~~~~~---~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DFGla~~~ 336 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQ---AGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHV 336 (576)
T ss_dssp ECCCCSCBHHHHHHSSSS---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEcCCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEecccceec
Confidence 999999999998865432 248999999999999999999997 89999999999999999999999999999877
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... ....+||+.|+|||++.+.
T Consensus 337 ~~~~~---~~~~~GT~~Y~APEvl~~~ 360 (576)
T 2acx_A 337 PEGQT---IKGRVGTVGYMAPEVVKNE 360 (576)
T ss_dssp CTTCC---EECCCSCGGGCCHHHHTTC
T ss_pred ccCcc---ccccCCCccccCHHHHcCC
Confidence 54322 2345799999999998764
No 129
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.95 E-value=2.4e-28 Score=262.57 Aligned_cols=186 Identities=32% Similarity=0.476 Sum_probs=153.6
Q ss_pred HHHHhhcCCcccceecccccEEEEEEEEc------CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEE
Q 004020 584 VLRNVTNNFSEENVLGRGGFGTVYKGELH------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYC 657 (779)
Q Consensus 584 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~ 657 (779)
.+....++|++.+.||+|+||.||+|+.. +++.||+|+++... .....+.+.+|++++++++||||+++++++
T Consensus 41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 119 (343)
T 1luf_A 41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-SADMQADFQREAALMAEFDNPNIVKLLGVC 119 (343)
T ss_dssp HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 34445688999999999999999999874 34889999997543 344567899999999999999999999999
Q ss_pred EeCCeEEEEEEecCCCChhhHhhhcccCC-------------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcE
Q 004020 658 LDGNERLLVYEYMPQGTLSRHLFNRKEEG-------------------LKPLEWTRRLTIALDVARGVEYLHGLAHQSFI 718 (779)
Q Consensus 658 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~-------------------~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~iv 718 (779)
.+.+..++||||+++++|.+++....... ...+++.+++.++.||++||+|||+ ++|+
T Consensus 120 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~---~~iv 196 (343)
T 1luf_A 120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFV 196 (343)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCC
T ss_pred ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCee
Confidence 99999999999999999999997643211 1468999999999999999999997 8999
Q ss_pred EcCCCCCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 719 HRDLKPSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 719 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
||||||+||+++.++.+||+|||+++...............||+.|+|||++.+.
T Consensus 197 H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 251 (343)
T 1luf_A 197 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYN 251 (343)
T ss_dssp CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHC
T ss_pred cCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccC
Confidence 9999999999999999999999999866433222223345689999999988654
No 130
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=262.94 Aligned_cols=181 Identities=31% Similarity=0.485 Sum_probs=153.4
Q ss_pred hcCCcccceecccccEEEEEEEEc--------CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH--------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLD 659 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~ 659 (779)
.++|.+.+.||+|+||.||+|+.. ++..||+|++.... .....+++.+|+++++++ +||||+++++++..
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA-TEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc-CHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 468999999999999999999753 24579999987653 455667899999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccCC-----------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEE
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEEG-----------LKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNIL 728 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~~-----------~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIl 728 (779)
.+..++||||+++|+|.+++......+ ...+++..++.++.||+.||+|||+ .+|+||||||+||+
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIl 223 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVL 223 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEE
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCcceEE
Confidence 999999999999999999997654211 2358999999999999999999997 89999999999999
Q ss_pred EcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 729 LGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 729 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++.++.+||+|||+++...............||+.|+|||++.+.
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 268 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDR 268 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSC
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCC
Confidence 999999999999999876554333333445688999999998654
No 131
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.95 E-value=2.5e-28 Score=265.60 Aligned_cols=177 Identities=28% Similarity=0.416 Sum_probs=148.8
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. +++.||||+++... .....+++.+|++++++++||||+++++++...+..++||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 191 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL-PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS-CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence 357889999999999999999886 78999999987542 3444567899999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++|+|.+++..... .+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 192 e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~ 264 (377)
T 3cbl_A 192 ELVQGGDFLTFLRTEGA----RLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFGMSREEA 264 (377)
T ss_dssp ECCTTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCEECT
T ss_pred EcCCCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECcCCCceecC
Confidence 99999999999965432 47899999999999999999997 899999999999999999999999999998754
Q ss_pred CCCCcccccccccCCccccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
............+++.|+|||++.+.
T Consensus 265 ~~~~~~~~~~~~~~~~y~aPE~~~~~ 290 (377)
T 3cbl_A 265 DGVYAASGGLRQVPVKWTAPEALNYG 290 (377)
T ss_dssp TSEEECCSSCCEEEGGGSCHHHHHHC
T ss_pred CCceeecCCCCCCCcCcCCHhHhccC
Confidence 32111111122357789999988643
No 132
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5e-30 Score=271.49 Aligned_cols=204 Identities=22% Similarity=0.287 Sum_probs=134.7
Q ss_pred CCCCccEEEcccCCCCCCCCcccc--cCCCCCceEeccCceeEeecCCCccCCCC-----CcccEEEccCCCCCCcCCCc
Q 004020 134 GLTSLQTISLDYNSFDSWVIPESL--KDATGLQRFSANGANITGTIPDFLGGDTI-----PGLMHLHLAFNFLQGPIPLS 206 (779)
Q Consensus 134 ~l~~L~~L~Ls~N~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~ 206 (779)
++++|++|+|++|++.+ .+|..+ ..+++|++|++++|++++. |..++ .+ ++|++|+|++|++++..|..
T Consensus 93 ~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~--~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG-TAPPPLLEATGPDLNILNLRNVSWATR-DAWLA--ELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBS-CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH--HHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred CcCCccEEEccCCcccc-hhHHHHHHhcCCCccEEEccCCCCcch-hHHHH--HHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 34555555555555543 333333 4555555555555555544 44443 23 66777777777776655555
Q ss_pred cccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCC---CCCC--CCCCCCcEEEccCCcccc--ccC-h
Q 004020 207 FGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGP---LPDL--SGLSSLQDFSVRDNQLTG--IVP-S 278 (779)
Q Consensus 207 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~--~~l~~L~~L~l~~N~l~~--~~p-~ 278 (779)
++ .+++|++|+|++|++.+. ++.+ ..+++|++|++++|+|++ .++ .
T Consensus 169 ~~--------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 169 VR--------------------------VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp CC--------------------------CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred hc--------------------------cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 44 467777777777777664 2233 677888888888888873 222 3
Q ss_pred hhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCC
Q 004020 279 SLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCN 358 (779)
Q Consensus 279 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (779)
.+..+++|+.|+|++|++++.+|..
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------------------------- 247 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAP------------------------------------------------------- 247 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCS-------------------------------------------------------
T ss_pred HHhcCCCCCEEECCCCcCCcccchh-------------------------------------------------------
Confidence 4457788888888888888766421
Q ss_pred CCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCccccc
Q 004020 359 SDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGK 433 (779)
Q Consensus 359 ~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ 433 (779)
.+...++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+++|++|+|++|++++.
T Consensus 248 ------~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 248 ------SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ------CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred ------hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 0111237888888888888 7787776 8899999999999855 66 88899999999999988763
No 133
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.95 E-value=9.7e-28 Score=250.85 Aligned_cols=179 Identities=26% Similarity=0.393 Sum_probs=152.9
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l 665 (779)
..++|++.+.||+|+||.||+|+.. +++.||+|++...........++.+|+..+..+ +||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 4578999999999999999999876 799999999987655555667889999999999 89999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC-------------
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD------------- 732 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~------------- 732 (779)
||||+++++|.+++...... ...+++..++.++.||+.||+|||+ ++|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~ 164 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRI-MSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDED 164 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC---------------
T ss_pred EEEecCCCcHHHHHHhhccc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcccccccccc
Confidence 99999999999999765332 1258999999999999999999997 899999999999999844
Q ss_pred ------CcEEEEeeccceecCCCCCcccccccccCCcccccccccccCCC
Q 004020 733 ------MRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGM 776 (779)
Q Consensus 733 ------~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~ 776 (779)
..+||+|||.++..... ....||+.|+|||++.+...+
T Consensus 165 ~~~~~~~~~kl~Dfg~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~ 208 (289)
T 1x8b_A 165 DWASNKVMFKIGDLGHVTRISSP------QVEEGDSRFLANEVLQENYTH 208 (289)
T ss_dssp -----CCCEEECCCTTCEETTCS------CCCCCCGGGCCHHHHTTCCTT
T ss_pred cccCCceEEEEcccccccccCCc------cccCCCccccChhHhcCCCCC
Confidence 47999999999876543 223589999999999876443
No 134
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.95 E-value=1.4e-27 Score=259.58 Aligned_cols=174 Identities=22% Similarity=0.348 Sum_probs=149.6
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|++.+.||+|+||.||+|... +++.||+|++.... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 49 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 126 (387)
T 1kob_A 49 VYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY--PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 126 (387)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred cccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc--hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence 4568999999999999999999875 68899999987543 33446789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC--CCcEEEEeeccce
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD--DMRAKVADFGLVR 744 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~ 744 (779)
|||+++++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++. ++.+||+|||+++
T Consensus 127 ~E~~~gg~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG~a~ 199 (387)
T 1kob_A 127 LEFLSGGELFDRIAAED----YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLAT 199 (387)
T ss_dssp EECCCCCBHHHHTTCTT----CCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCE
T ss_pred EEcCCCCcHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEecccce
Confidence 99999999999885432 258999999999999999999997 89999999999999974 5789999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
....... .....||+.|+|||++.+.
T Consensus 200 ~~~~~~~---~~~~~gt~~y~aPE~~~~~ 225 (387)
T 1kob_A 200 KLNPDEI---VKVTTATAEFAAPEIVDRE 225 (387)
T ss_dssp ECCTTSC---EEEECSSGGGCCHHHHTTC
T ss_pred ecCCCcc---eeeeccCCCccCchhccCC
Confidence 7754322 2334799999999998764
No 135
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.95 E-value=2.4e-28 Score=264.23 Aligned_cols=190 Identities=26% Similarity=0.404 Sum_probs=155.6
Q ss_pred eeHHHHHHhhcCCcccceecccccEEEEEEEEc------CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccce
Q 004020 580 ISIQVLRNVTNNFSEENVLGRGGFGTVYKGELH------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVG 652 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~ 652 (779)
+.........++|++.+.||+|+||.||+|++. +++.||||++.... .....+.+.+|+++++++ +||||++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC-CHHHHHHHHHHHHHHHhhcCCcceee
Confidence 344555566789999999999999999999742 46789999997543 344557799999999999 7999999
Q ss_pred EeeEEEeCCe-EEEEEEecCCCChhhHhhhcccCC---------------------------------------------
Q 004020 653 LLGYCLDGNE-RLLVYEYMPQGTLSRHLFNRKEEG--------------------------------------------- 686 (779)
Q Consensus 653 ~~~~~~~~~~-~~lv~e~~~~gsL~~~l~~~~~~~--------------------------------------------- 686 (779)
+++++.+.+. .++||||+++|+|.+++.......
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEE 170 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccc
Confidence 9999987654 899999999999999997654210
Q ss_pred ----------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCCCC
Q 004020 687 ----------------LKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDNG 750 (779)
Q Consensus 687 ----------------~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 750 (779)
...+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+++......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~ 247 (359)
T 3vhe_A 171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 247 (359)
T ss_dssp -------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCT
T ss_pred cccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEeccceeeecccc
Confidence 1128899999999999999999997 899999999999999999999999999998765543
Q ss_pred CcccccccccCCccccccccccc
Q 004020 751 KHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 751 ~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.........||+.|+|||++.+.
T Consensus 248 ~~~~~~~~~~t~~y~aPE~~~~~ 270 (359)
T 3vhe_A 248 DYVRKGDARLPLKWMAPETIFDR 270 (359)
T ss_dssp TCEEC--CEECGGGCCHHHHHHC
T ss_pred cchhccccCCCceeEChhhhcCC
Confidence 33344456789999999998654
No 136
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.9e-28 Score=252.29 Aligned_cols=207 Identities=24% Similarity=0.322 Sum_probs=188.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCC-CCCCCcccccCCCCccEEE
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNN-FTSVPSDFFKGLTSLQTIS 142 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 142 (779)
.++++|++++|++++..+..|..+++|++|+|++|++++..+ .|.++++|++|+|++|. ++.+++..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 479999999999998888889999999999999999999876 89999999999999997 9999999999999999999
Q ss_pred cccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCC
Q 004020 143 LDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKG 222 (779)
Q Consensus 143 Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~ 222 (779)
|++|++.+ ..|..|.++++|++|++++|.+++..+..+. .+++|++|+|++|++++..+..+.
T Consensus 112 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~-------------- 174 (285)
T 1ozn_A 112 LDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFR--DLGNLTHLFLHGNRISSVPERAFR-------------- 174 (285)
T ss_dssp CTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCEECTTTTT--------------
T ss_pred CCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhc--cCCCccEEECCCCcccccCHHHhc--------------
Confidence 99999987 6688899999999999999999977777775 799999999999999965554454
Q ss_pred CCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccC
Q 004020 223 DSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQT 300 (779)
Q Consensus 223 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 300 (779)
.+++|+.|+|++|.+++..| .+..+++|+.|++++|++++..+..+..+++|+.|+|++|++.+..
T Consensus 175 ------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 175 ------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp ------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred ------------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 68999999999999999877 5899999999999999999877788999999999999999998643
No 137
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.95 E-value=4.7e-28 Score=257.94 Aligned_cols=183 Identities=29% Similarity=0.480 Sum_probs=135.5
Q ss_pred hhcCCcccceecccccEEEEEEEEcCC----cEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHDG----TKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
..++|++.+.||+|+||.||+|+.... ..||+|++..........+++.+|++++++++||||+++++++...+..
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 456899999999999999999976533 2799999987655556678899999999999999999999999887655
Q ss_pred ------EEEEEecCCCChhhHhhhcccC-CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEE
Q 004020 664 ------LLVYEYMPQGTLSRHLFNRKEE-GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAK 736 (779)
Q Consensus 664 ------~lv~e~~~~gsL~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~k 736 (779)
++||||+++++|.+++...... ....+++..++.++.||+.||+|||+ ++|+||||||+||++++++.+|
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~Dikp~NIli~~~~~~k 177 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS---RNFIHRDLAARNCMLAEDMTVC 177 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc---CCcccCCCCcceEEEcCCCCEE
Confidence 9999999999999998654422 22258899999999999999999997 8999999999999999999999
Q ss_pred EEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 737 VADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 737 l~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+|||+++...............+++.|+|||++.+.
T Consensus 178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 214 (323)
T 3qup_A 178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADN 214 (323)
T ss_dssp ECCCCC-----------------CCGGGCCHHHHHHC
T ss_pred EeeccccccccccccccccccccCcccccCchhhcCC
Confidence 9999999876544333333345578899999998664
No 138
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=260.18 Aligned_cols=174 Identities=22% Similarity=0.356 Sum_probs=146.0
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCC--CccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRH--RHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|...+++.||+|++..........+.+.+|++++++++| |||+++++++...+..++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 35799999999999999999998889999999998666566667889999999999986 9999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|| +.+++|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+|||++ ++.+||+|||+++..
T Consensus 88 ~e-~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~ 157 (343)
T 3dbq_A 88 ME-CGNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQM 157 (343)
T ss_dssp EC-CCSEEHHHHHHHSC-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC
T ss_pred Ee-CCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeeccccccc
Confidence 99 45789999986542 58899999999999999999996 8999999999999997 578999999999876
Q ss_pred CCCCCcccccccccCCcccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
............+||+.|+|||++.+
T Consensus 158 ~~~~~~~~~~~~~gt~~y~aPE~~~~ 183 (343)
T 3dbq_A 158 QPDTTSVVKDSQVGTVNYMPPEAIKD 183 (343)
T ss_dssp ------------CCCCSSCCHHHHHH
T ss_pred CcccccccCCCCcCCcCcCCHHHHhh
Confidence 54433333345679999999999865
No 139
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=264.50 Aligned_cols=181 Identities=29% Similarity=0.433 Sum_probs=149.9
Q ss_pred hcCCcccceecccccEEEEEEEEc------CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ......++.+|+.++++++||||+++++++...+.
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~ 148 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC-SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 148 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc-ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence 467899999999999999999843 46789999986433 34555678999999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHhhhcccC--CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC---cEEE
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEE--GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM---RAKV 737 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~---~~kl 737 (779)
.++||||+++|+|.+++...... ....+++..++.++.||+.||+|||+ ++|+||||||+|||++.++ .+||
T Consensus 149 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kL 225 (367)
T 3l9p_A 149 RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKI 225 (367)
T ss_dssp CEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred CEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCCCCceEEE
Confidence 99999999999999999765421 22358899999999999999999997 8999999999999999554 5999
Q ss_pred EeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 738 ADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 738 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+|||+++...............||+.|+|||++.+.
T Consensus 226 ~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 261 (367)
T 3l9p_A 226 GDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEG 261 (367)
T ss_dssp CCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHC
T ss_pred CCCccccccccccccccCCCcCCcccEECHHHhcCC
Confidence 999999865332222223345689999999998654
No 140
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.95 E-value=2.2e-27 Score=247.78 Aligned_cols=175 Identities=26% Similarity=0.456 Sum_probs=153.3
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|++.+.||+|+||.||+|... +++.||+|++..........+.+.+|++++++++||||+++++++...+..++|
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 83 (284)
T 3kk8_A 4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 83 (284)
T ss_dssp TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence 4678999999999999999999875 689999999987766666778899999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc---EEEEeeccc
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR---AKVADFGLV 743 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~---~kl~DFG~a 743 (779)
|||+++++|.+++.... .+++..+..++.|++.||+|||+ .+|+||||||+||+++.++. +||+|||++
T Consensus 84 ~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~ 155 (284)
T 3kk8_A 84 FDLVTGGELFEDIVARE-----FYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLA 155 (284)
T ss_dssp ECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred EecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEeeceee
Confidence 99999999998886543 58899999999999999999996 89999999999999986655 999999999
Q ss_pred eecCCCCCcccccccccCCccccccccccc
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
....... ......||+.|+|||++.+.
T Consensus 156 ~~~~~~~---~~~~~~~~~~y~aPE~~~~~ 182 (284)
T 3kk8_A 156 IEVNDSE---AWHGFAGTPGYLSPEVLKKD 182 (284)
T ss_dssp EECCSSC---BCCCSCSCGGGCCHHHHTTC
T ss_pred EEcccCc---cccCCCCCcCCcCchhhcCC
Confidence 8765432 22345799999999998765
No 141
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=253.18 Aligned_cols=175 Identities=26% Similarity=0.411 Sum_probs=148.8
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC--eEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN--ERLL 665 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~l 665 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..... ....+.+.+|++++++++||||+++++++...+ ..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 86 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL 86 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEE
Confidence 457999999999999999999876 589999999975432 233567889999999999999999999998765 7799
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE----cCCCcEEEEeec
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL----GDDMRAKVADFG 741 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll----~~~~~~kl~DFG 741 (779)
||||+++++|.+++...... ..+++..++.++.||+.||+|||+ .+|+||||||+||++ +.++.+||+|||
T Consensus 87 v~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg 161 (319)
T 4euu_A 87 IMEFCPCGSLYTVLEEPSNA--YGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFG 161 (319)
T ss_dssp EEECCTTCBHHHHHHSGGGT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEEECCCT
T ss_pred EEeCCCCCCHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEEEccCC
Confidence 99999999999999765432 248999999999999999999997 899999999999999 788889999999
Q ss_pred cceecCCCCCcccccccccCCcccccccccc
Q 004020 742 LVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 742 ~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
+++....... .....||+.|+|||++.+
T Consensus 162 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~~ 189 (319)
T 4euu_A 162 AARELEDDEQ---FVSLYGTEEYLHPDMYER 189 (319)
T ss_dssp TCEECCTTCC---BCCCCSCGGGCCHHHHHH
T ss_pred CceecCCCCc---eeecccCCCccCHHHhhh
Confidence 9987755322 234569999999999863
No 142
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.95 E-value=8.4e-28 Score=254.81 Aligned_cols=181 Identities=28% Similarity=0.438 Sum_probs=152.6
Q ss_pred hcCCcccceecccccEEEEEEEE------cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL------HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
.++|.+.+.||+|+||.||+|.. .+++.||+|++.... .....+++.+|++++++++||||+++++++.+.+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA-SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC-CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 46899999999999999999976 245789999987543 34556789999999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHhhhcccC-------------------CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCC
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEE-------------------GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLK 723 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~-------------------~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlk 723 (779)
.++||||+++++|.+++...... ....+++..++.++.||++||+|||+ ++|+|||||
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dik 177 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLA 177 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH---CCCcccccc
Confidence 99999999999999999765431 11347899999999999999999996 899999999
Q ss_pred CCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 724 PSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 724 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+||+++.++.+||+|||+++...............+|+.|+|||++.+.
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 227 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDH 227 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCC
Confidence 99999999999999999999877554333333445678899999988653
No 143
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.95 E-value=3.3e-28 Score=257.64 Aligned_cols=178 Identities=25% Similarity=0.439 Sum_probs=142.6
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe---
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE--- 662 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--- 662 (779)
+.++|++.+.||+|+||.||+|+. .+++.||+|++..... .......+.+|++++++++||||+++++++.....
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~ 89 (311)
T 3ork_A 10 LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP 89 (311)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEE
T ss_pred ecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCc
Confidence 457899999999999999999986 5789999999976543 23445678999999999999999999999876543
Q ss_pred -EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 663 -RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 663 -~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
.|+||||+++++|.+++.... .+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg 161 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHTEG-----PMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFG 161 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCCS
T ss_pred ccEEEEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeecc
Confidence 499999999999999986542 58899999999999999999996 899999999999999999999999999
Q ss_pred cceecCCCCCc-ccccccccCCccccccccccc
Q 004020 742 LVRLAPDNGKH-SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 742 ~a~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~ 773 (779)
+++........ .......||+.|+|||++.+.
T Consensus 162 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 194 (311)
T 3ork_A 162 IARAIADSGNSVTQTAAVIGTAQYLSPEQARGD 194 (311)
T ss_dssp CC------------------CCTTCCHHHHHTC
T ss_pred CcccccccccccccccccCcCcccCCHHHhcCC
Confidence 99876543221 122345699999999998765
No 144
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.95 E-value=2.2e-28 Score=272.38 Aligned_cols=177 Identities=29% Similarity=0.424 Sum_probs=141.3
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
..++|++.+.||+|+||.||+|+.. +++.||+|++..... .......+.+|+++++.++||||+++++++...+..++
T Consensus 146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l 225 (446)
T 4ejn_A 146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF 225 (446)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence 3468999999999999999999865 689999999976532 23345678899999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++|+|.+++.... .+++..+..++.||+.||+|||+ ..+|+||||||+|||++.++.+||+|||+|+.
T Consensus 226 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~--~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~ 298 (446)
T 4ejn_A 226 VMEYANGGELFFHLSRER-----VFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKE 298 (446)
T ss_dssp EECCCSSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCCCGGGEEECSSSCEEECCCCCCCT
T ss_pred EEeeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHhh--cCCEEECCCCHHHEEECCCCCEEEccCCCcee
Confidence 999999999999886543 58899999999999999999995 37899999999999999999999999999986
Q ss_pred cCCCCCcccccccccCCccccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... ......+||+.|+|||++.+.
T Consensus 299 ~~~~~--~~~~~~~gt~~y~aPE~~~~~ 324 (446)
T 4ejn_A 299 GIKDG--ATMKTFCGTPEYLAPEVLEDN 324 (446)
T ss_dssp TCC-------CCSSSCGGGCCHHHHHTS
T ss_pred ccCCC--cccccccCCccccCHhhcCCC
Confidence 43322 123446799999999998654
No 145
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=7.3e-27 Score=259.65 Aligned_cols=289 Identities=21% Similarity=0.274 Sum_probs=202.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.+++.|++++|++++ +|.. .++|++|+|++|++++ +|.|.++++|++|++++|+++++|.. .++|++|+|+
T Consensus 111 ~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECC
T ss_pred CCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCcccCCC----cccccEEECc
Confidence 456777777777664 2221 1689999999999997 55799999999999999999998753 3599999999
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGD 223 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~ 223 (779)
+|++.+ +| .+.++++|+.|++++|.+++ +|.. .++|++|++++|+++ .+|. ++. .+|+.|++++|++.
T Consensus 182 ~n~l~~--l~-~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 182 NNQLEE--LP-ELQNLPFLTAIYADNNSLKK-LPDL-----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SSCCSS--CC-CCTTCTTCCEEECCSSCCSS-CCCC-----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred CCcCCc--Cc-cccCCCCCCEEECCCCcCCc-CCCC-----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence 999986 56 58999999999999999985 5543 358999999999998 7775 555 67999999999887
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
.... .+++|+.|++++|++++. |.. +++|++|++++|++++ +|.. .++|+.|++++|++++...-.
T Consensus 251 ~l~~-------~~~~L~~L~l~~N~l~~l-~~~--~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i~~~~ 316 (454)
T 1jl5_A 251 TLPD-------LPPSLEALNVRDNYLTDL-PEL--PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSLCDLP 316 (454)
T ss_dssp SCCS-------CCTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEECCCC
T ss_pred cccc-------cccccCEEECCCCccccc-Ccc--cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcccCCc
Confidence 5322 247899999999999984 432 3789999999999986 2321 267889999999888754321
Q ss_pred CCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcccc
Q 004020 304 NSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLS 383 (779)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 383 (779)
.....+++. .|.+. + .....++|+.|+|++|+++
T Consensus 317 ~~L~~L~Ls--~N~l~-------------------------------------------~-lp~~~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 317 PSLEELNVS--NNKLI-------------------------------------------E-LPALPPRLERLIASFNHLA 350 (454)
T ss_dssp TTCCEEECC--SSCCS-------------------------------------------C-CCCCCTTCCEEECCSSCCS
T ss_pred CcCCEEECC--CCccc-------------------------------------------c-ccccCCcCCEEECCCCccc
Confidence 111111111 11100 0 0011247999999999999
Q ss_pred ccccccccccccCCeEeccCccccc--cCCccCCCC-------------CCCCceeccCCcccc--cCCCC
Q 004020 384 GTISSNFSRLTSLRQLMLSGNELTG--TIPKELTTL-------------PSLEMLDVSNNHLFG--KVPNF 437 (779)
Q Consensus 384 g~~p~~~~~l~~L~~L~Ls~N~l~g--~iP~~l~~l-------------~~L~~L~Ls~N~l~g--~iP~~ 437 (779)
+ +|. .+++|++|+|++|++++ .+|.++..+ ++|++||+++|+++| .+|..
T Consensus 351 ~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 351 E-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred c-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 4 776 47999999999999999 899999888 889999999999998 88863
No 146
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.95 E-value=8.1e-28 Score=262.48 Aligned_cols=173 Identities=22% Similarity=0.354 Sum_probs=146.3
Q ss_pred cCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC--CCccceEeeEEEeCCeEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR--HRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~~~~lv~ 667 (779)
.+|++.+.||+|+||.||+|...+++.||||++..........+.+.+|++++++++ ||||+++++++...+..|+||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 469999999999999999999888999999999766555666788999999999996 599999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
| +.+++|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+|||++ ++.+||+|||+++...
T Consensus 136 E-~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~ 205 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ 205 (390)
T ss_dssp E-CCSEEHHHHHHHCS-----SCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-
T ss_pred e-cCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecCcccccc
Confidence 9 56889999986543 57888999999999999999996 8999999999999995 5789999999998765
Q ss_pred CCCCcccccccccCCcccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
...........+||+.|+|||++.+
T Consensus 206 ~~~~~~~~~~~~gt~~y~aPE~~~~ 230 (390)
T 2zmd_A 206 PDTTSVVKDSQVGAVNYMPPEAIKD 230 (390)
T ss_dssp --------CCSCCCGGGCCHHHHHC
T ss_pred CCCccccCCCCCcCCCccChHHhhh
Confidence 4332223345679999999999875
No 147
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.95 E-value=5.6e-28 Score=262.10 Aligned_cols=177 Identities=27% Similarity=0.473 Sum_probs=138.9
Q ss_pred hcCCcccceecccccEEEEEEEEc----CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH----DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 664 (779)
.++|++.+.||+|+||.||+|+.. ++..||||+++... .....+++.+|++++++++||||+++++++...+..+
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 122 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY-TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVM 122 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceE
Confidence 357999999999999999999765 57789999997543 3455678999999999999999999999999999999
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++++|.+++.... ..+++.+++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++
T Consensus 123 lv~e~~~~~sL~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 195 (373)
T 2qol_A 123 IVTEYMENGSLDSFLRKHD----AQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGR 195 (373)
T ss_dssp EEEECCTTCBHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred EEEeCCCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCcccc
Confidence 9999999999999996532 258999999999999999999996 899999999999999999999999999998
Q ss_pred ecCCCCCcc-cccccccCCccccccccccc
Q 004020 745 LAPDNGKHS-IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~-~~~~~~gt~~y~APE~l~~~ 773 (779)
......... ......+++.|+|||++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 225 (373)
T 2qol_A 196 VLEDDPEAAYTTRGGKIPIRWTSPEAIAYR 225 (373)
T ss_dssp ------------------CTTSCHHHHHHC
T ss_pred ccccCCccceeccCCCcCCCccChhhhccC
Confidence 765432211 11223467889999998754
No 148
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.95 E-value=9.1e-28 Score=259.36 Aligned_cols=173 Identities=24% Similarity=0.307 Sum_probs=140.9
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..... ..+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 95 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA---IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIM 95 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT---SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc---ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEE
Confidence 468999999999999999999876 789999999975432 2256789999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc--EEEEeecccee
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR--AKVADFGLVRL 745 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~--~kl~DFG~a~~ 745 (779)
||+++|+|.+++.... .+++..+..++.|++.||+|||+ ++|+||||||+||+++.++. +||+|||+++.
T Consensus 96 e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~ 167 (361)
T 3uc3_A 96 EYASGGELYERICNAG-----RFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYSKS 167 (361)
T ss_dssp ECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCCC--
T ss_pred EeCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCcccc
Confidence 9999999999986543 48999999999999999999996 89999999999999987765 99999999875
Q ss_pred cCCCCCcccccccccCCcccccccccccCC
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
.... .......||+.|+|||++.+...
T Consensus 168 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~ 194 (361)
T 3uc3_A 168 SVLH---SQPKSTVGTPAYIAPEVLLRQEY 194 (361)
T ss_dssp ----------------CTTSCHHHHHCSSC
T ss_pred cccc---CCCCCCcCCCCcCChhhhcCCCC
Confidence 4322 12234579999999999876543
No 149
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.95 E-value=5e-28 Score=258.29 Aligned_cols=180 Identities=24% Similarity=0.357 Sum_probs=141.9
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
...++|++.+.||+|+||.||+|+.. +++.||+|++..........+.+.+|++++++++||||+++++++.+.+..++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 34578999999999999999999765 78999999997665444455678899999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEc-----CCCcEEEEee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLG-----DDMRAKVADF 740 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~-----~~~~~kl~DF 740 (779)
||||++ ++|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++ .++.+||+||
T Consensus 111 v~e~~~-~~L~~~~~~~~-----~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Df 181 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDKNP-----DVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPVLKIGDF 181 (329)
T ss_dssp EEECCS-EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCEEEECCT
T ss_pred EEecCC-CCHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccceEEECcC
Confidence 999997 59999886543 48899999999999999999997 8999999999999994 5556999999
Q ss_pred ccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
|+++....... ......||+.|+|||++.+...++
T Consensus 182 g~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~ 216 (329)
T 3gbz_A 182 GLARAFGIPIR--QFTHEIITLWYRPPEILLGSRHYS 216 (329)
T ss_dssp THHHHHC-------------CCTTCCHHHHTTCCCCC
T ss_pred CCccccCCccc--ccCCCcCCccccCHHHhcCCCCCC
Confidence 99987643221 223456899999999998765444
No 150
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.95 E-value=8.3e-28 Score=250.87 Aligned_cols=174 Identities=29% Similarity=0.447 Sum_probs=146.9
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
.++|++.+.||+|+||.||+|+..++..||+|++...... .+++.+|++++++++||||+++++++.+.+..++|||
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 99 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE 99 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC---HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC---HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEe
Confidence 4578999999999999999999998899999999765432 3568899999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
|+++++|.+++..... .+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++....
T Consensus 100 ~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 172 (283)
T 3gen_A 100 YMANGCLLNYLREMRH----RFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172 (283)
T ss_dssp CCTTCBHHHHHHCGGG----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCC
T ss_pred ccCCCcHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCEEEccccccccccc
Confidence 9999999999865332 58999999999999999999996 8999999999999999999999999999986543
Q ss_pred CCCcccccccccCCccccccccccc
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.. ........+|+.|+|||++.+.
T Consensus 173 ~~-~~~~~~~~~~~~y~aPE~~~~~ 196 (283)
T 3gen_A 173 DE-YTSSVGSKFPVRWSPPEVLMYS 196 (283)
T ss_dssp HH-HHSTTSTTSCGGGCCHHHHHHC
T ss_pred cc-cccccCCccCcccCCHHHhccC
Confidence 21 1122334578899999998754
No 151
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=262.93 Aligned_cols=274 Identities=20% Similarity=0.230 Sum_probs=192.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
.++++|++++|++++..+..|..+++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 589999999999998777799999999999999999999887 7999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCc--ccccCCCCCceEeccCce-eEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCC
Q 004020 144 DYNSFDSWVIP--ESLKDATGLQRFSANGAN-ITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQ 220 (779)
Q Consensus 144 s~N~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n 220 (779)
++|++.. +| ..+.++++|+.|++++|+ ++...+..+. .+++|++|++++|++++..|..++.
T Consensus 132 ~~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~----------- 196 (353)
T 2z80_A 132 LGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKS----------- 196 (353)
T ss_dssp TTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTT-----------
T ss_pred CCCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHcc--CCCCCCEEECCCCCcCccCHHHHhc-----------
Confidence 9999986 44 489999999999999994 7766677786 7999999999999999888888764
Q ss_pred CCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhh---CCCCCCEEEccCccc
Q 004020 221 KGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLV---NLHSLAVVNLTNNLF 296 (779)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l 296 (779)
+++|++|+|++|.++..++. +..+++|+.|++++|++++..+..+. ....++.++|++|.+
T Consensus 197 ---------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 197 ---------------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ---------------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred ---------------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 44555555555554432222 22344555555555555443333222 234455555555554
Q ss_pred cccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEE
Q 004020 297 QGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVN 376 (779)
Q Consensus 297 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 376 (779)
++..- ..+.. .....++|+.|+
T Consensus 262 ~~~~l---------------------------------~~l~~-------------------------~l~~l~~L~~L~ 283 (353)
T 2z80_A 262 TDESL---------------------------------FQVMK-------------------------LLNQISGLLELE 283 (353)
T ss_dssp CHHHH---------------------------------HHHHH-------------------------HHHTCTTCCEEE
T ss_pred cCcch---------------------------------hhhHH-------------------------HHhcccCCCEEE
Confidence 43100 00000 001112455566
Q ss_pred ccCcccccccccc-ccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccccC
Q 004020 377 LKNLGLSGTISSN-FSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKV 434 (779)
Q Consensus 377 Ls~n~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~i 434 (779)
|++|+++ .+|.. |+.+++|++|+|++|.+++..| .++.|....+...+.+
T Consensus 284 Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~-------~l~~l~~~~~~~~~~~ 334 (353)
T 2z80_A 284 FSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLSRWLNKNSQKE 334 (353)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH-------HHHHHHHHHHHTTTTE
T ss_pred CCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC-------CcHHHHHHHHhccccC
Confidence 6666665 34444 4788899999999998886554 3444444444444444
No 152
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.95 E-value=5e-28 Score=258.70 Aligned_cols=178 Identities=26% Similarity=0.354 Sum_probs=151.8
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh------hHHHHHHHHHHHHHcCCCCccceEeeEEEe
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE------KGFAEFKSEIAVLTKVRHRHLVGLLGYCLD 659 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 659 (779)
...++|++.+.||+|+||.||+|+.. +++.||||++....... .....+.+|++++++++||||+++++++.+
T Consensus 21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~ 100 (335)
T 3dls_A 21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN 100 (335)
T ss_dssp HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence 45678999999999999999999864 68899999997653221 133457789999999999999999999999
Q ss_pred CCeEEEEEEecCCC-ChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEE
Q 004020 660 GNERLLVYEYMPQG-TLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVA 738 (779)
Q Consensus 660 ~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~ 738 (779)
.+..++||||+.+| +|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+
T Consensus 101 ~~~~~lv~e~~~~g~~l~~~~~~~~-----~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~ 172 (335)
T 3dls_A 101 QGFFQLVMEKHGSGLDLFAFIDRHP-----RLDEPLASYIFRQLVSAVGYLRL---KDIIHRDIKDENIVIAEDFTIKLI 172 (335)
T ss_dssp SSEEEEEEECCTTSCBHHHHHHTCC-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEEC
T ss_pred CCEEEEEEEeCCCCccHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEEeccCHHHEEEcCCCcEEEe
Confidence 99999999999777 9999885432 58999999999999999999996 899999999999999999999999
Q ss_pred eeccceecCCCCCcccccccccCCcccccccccccCC
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
|||+++....... .....||+.|+|||++.+...
T Consensus 173 Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~ 206 (335)
T 3dls_A 173 DFGSAAYLERGKL---FYTFCGTIEYCAPEVLMGNPY 206 (335)
T ss_dssp CCTTCEECCTTCC---BCEECSCGGGCCHHHHTTCCB
T ss_pred ecccceECCCCCc---eeccCCCccccChhhhcCCCC
Confidence 9999987754322 234579999999999877654
No 153
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.95 E-value=2.5e-27 Score=246.36 Aligned_cols=174 Identities=26% Similarity=0.416 Sum_probs=150.8
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
.+.++|++.+.||+|+||.||+|... ++..||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 83 (277)
T 3f3z_A 6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV--EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYL 83 (277)
T ss_dssp CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEE
Confidence 35678999999999999999999876 577899999876542 335678999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE---cCCCcEEEEeecc
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL---GDDMRAKVADFGL 742 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll---~~~~~~kl~DFG~ 742 (779)
||||+++++|.+++.... .+++..++.++.|++.||+|||+ ++|+||||||+||++ +.++.+||+|||+
T Consensus 84 v~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~ 155 (277)
T 3f3z_A 84 VMELCTGGELFERVVHKR-----VFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGL 155 (277)
T ss_dssp EEECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred EEeccCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEeccc
Confidence 999999999999886543 48899999999999999999996 899999999999999 7889999999999
Q ss_pred ceecCCCCCcccccccccCCccccccccccc
Q 004020 743 VRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+....... ......||+.|+|||++.+.
T Consensus 156 ~~~~~~~~---~~~~~~~t~~y~aPE~~~~~ 183 (277)
T 3f3z_A 156 AARFKPGK---MMRTKVGTPYYVSPQVLEGL 183 (277)
T ss_dssp CEECCTTS---CBCCCCSCTTTCCHHHHTTC
T ss_pred ceeccCcc---chhccCCCCCccChHHhccc
Confidence 98765432 22345699999999998764
No 154
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=1.1e-27 Score=259.38 Aligned_cols=175 Identities=29% Similarity=0.427 Sum_probs=145.1
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC-----
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN----- 661 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----- 661 (779)
+.++|++.+.||+|+||.||+|... +|+.||||++..........+++.+|+++++.++||||+++++++...+
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 3578999999999999999999874 7999999999766555556678999999999999999999999998763
Q ss_pred -eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEee
Q 004020 662 -ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADF 740 (779)
Q Consensus 662 -~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DF 740 (779)
..|+||||+ +++|.+++... .+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+||
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~~------~l~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Df 172 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKHE------KLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDF 172 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCC
T ss_pred ceEEEEEecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEEEEee
Confidence 469999999 78999988542 47899999999999999999997 89999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
|+++..... ....+||+.|+|||++.+...++
T Consensus 173 g~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~ 204 (367)
T 1cm8_A 173 GLARQADSE-----MTGYVVTRWYRAPEVILNWMRYT 204 (367)
T ss_dssp TTCEECCSS-----CCSSCSCGGGCCTHHHHTTTCCC
T ss_pred ecccccccc-----cCcCcCCCCcCCHHHHhCCCCCC
Confidence 999876432 23457899999999988755444
No 155
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.95 E-value=7.1e-28 Score=253.03 Aligned_cols=177 Identities=29% Similarity=0.569 Sum_probs=144.6
Q ss_pred hcCCcccceecccccEEEEEEEE-----cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC--C
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-----HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG--N 661 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~ 661 (779)
.++|++.+.||+|+||.||+|++ .+++.||+|++.... ....+.+.+|++++++++||||+++++++... .
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 86 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST--EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR 86 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHT
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence 46899999999999999999984 268899999987543 45567899999999999999999999998654 4
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..++||||+++++|.+++..... .+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg 159 (295)
T 3ugc_A 87 NLKLIMEYLPYGSLRDYLQKHKE----RIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFG 159 (295)
T ss_dssp SCEEEEECCTTCBHHHHHHHCGG----GCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCC
T ss_pred ceEEEEEeCCCCCHHHHHHhccc----ccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccCc
Confidence 58999999999999999966532 48899999999999999999997 899999999999999999999999999
Q ss_pred cceecCCCCCc-ccccccccCCcccccccccccC
Q 004020 742 LVRLAPDNGKH-SIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 742 ~a~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~ 774 (779)
+++........ .......++..|+|||++.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~ 193 (295)
T 3ugc_A 160 LTKVLPQDKEFFKVKEPGESPIFWYAPESLTESK 193 (295)
T ss_dssp SCC-------------CTTCGGGGCCHHHHHHCC
T ss_pred ccccccCCcceeeeccCCCCccceeCcHHhcCCC
Confidence 99876543221 1223345788899999987543
No 156
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.1e-29 Score=266.09 Aligned_cols=218 Identities=18% Similarity=0.215 Sum_probs=113.5
Q ss_pred CCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCc
Q 004020 109 SGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPG 188 (779)
Q Consensus 109 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~ 188 (779)
..+++|++|+|++|+++.+++..|..+++|++|+|++|++.+ .+. +..+++|++|++++|++++.. ..++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~Ls~n~l~~l~-------~~~~ 100 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNNYVQELL-------VGPS 100 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--EEE-ETTCTTCCEEECCSSEEEEEE-------ECTT
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--chh-hhhcCCCCEEECcCCcccccc-------CCCC
Confidence 334445555555555555554445555555555555555543 111 555555555555555555322 1245
Q ss_pred ccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEc
Q 004020 189 LMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSV 267 (779)
Q Consensus 189 L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l 267 (779)
|++|++++|++++..+. .+++|+.|+|++|++++..+ .+..+++|++|++
T Consensus 101 L~~L~l~~n~l~~~~~~-----------------------------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 101 IETLHAANNNISRVSCS-----------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp CCEEECCSSCCSEEEEC-----------------------------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred cCEEECCCCccCCcCcc-----------------------------ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 66666666666533221 13445555555555555544 3555555666666
Q ss_pred cCCccccccChhhh-CCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchh
Q 004020 268 RDNQLTGIVPSSLV-NLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAV 346 (779)
Q Consensus 268 ~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (779)
++|++++..|..+. .+++|++|+|++|++++..+..
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------------------------- 188 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV------------------------------------------- 188 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-------------------------------------------
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-------------------------------------------
Confidence 66655555454443 4555666666666555431110
Q ss_pred cccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceecc
Q 004020 347 LAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVS 426 (779)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 426 (779)
..++|+.|+|++|++++ +|..+..+++|+.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus 189 ---------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 189 ---------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp ---------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred ---------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 01245566666666654 3333556666666666666666 455556666666666666
Q ss_pred CCccc
Q 004020 427 NNHLF 431 (779)
Q Consensus 427 ~N~l~ 431 (779)
+|+++
T Consensus 246 ~N~~~ 250 (317)
T 3o53_A 246 GNGFH 250 (317)
T ss_dssp TCCCB
T ss_pred CCCcc
Confidence 66665
No 157
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.95 E-value=1.1e-27 Score=267.14 Aligned_cols=172 Identities=27% Similarity=0.367 Sum_probs=141.9
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC------
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG------ 660 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~------ 660 (779)
..++|++.+.||+|+||.||+|+.. +++.||||++..........+++.+|+.+++.++||||+++++++...
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 4578999999999999999999765 689999999987655566678899999999999999999999999755
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEee
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADF 740 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DF 740 (779)
...|+||||+++ ++.+.+.. .+++..+..++.||+.||+|||+ .+|+||||||+|||++.++.+||+||
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~~-------~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~kl~DF 208 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQM-------ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF 208 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC
T ss_pred CeEEEEEeCCCC-CHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEEEEEE
Confidence 357999999976 46555521 37889999999999999999997 79999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccCCccccccccccc
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+|+...... ..+..+||+.|+|||++.+.
T Consensus 209 G~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~ 238 (464)
T 3ttj_A 209 GLARTAGTSF---MMTPYVVTRYYRAPEVILGM 238 (464)
T ss_dssp CCC-----CC---CC----CCCTTCCHHHHTTC
T ss_pred EeeeecCCCc---ccCCCcccccccCHHHHcCC
Confidence 9998765421 23456799999999999875
No 158
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.95 E-value=2.4e-27 Score=246.39 Aligned_cols=178 Identities=26% Similarity=0.421 Sum_probs=152.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
..++|++.+.||+|+||.||+|+.. +++.||+|++..... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC-TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc-hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence 4568999999999999999999876 689999999875432 23457789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++... ..+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||.+...
T Consensus 84 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 155 (276)
T 2yex_A 84 LEYCSGGELFDRIEPD-----IGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF 155 (276)
T ss_dssp EECCTTEEGGGGSBTT-----TBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEecCCCcHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCCcccc
Confidence 9999999999988533 258899999999999999999996 89999999999999999999999999999866
Q ss_pred CCCCCcccccccccCCcccccccccccC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
.............||+.|+|||++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~ 183 (276)
T 2yex_A 156 RYNNRERLLNKMCGTLPYVAPELLKRRE 183 (276)
T ss_dssp EETTEECCBCCCCSCGGGCCGGGGTCSS
T ss_pred CCCcchhcccCCccccCccChHHHhcCC
Confidence 4332222234457999999999987654
No 159
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.95 E-value=2.4e-27 Score=253.65 Aligned_cols=181 Identities=28% Similarity=0.496 Sum_probs=151.4
Q ss_pred hcCCcccceecccccEEEEEEEEc--------CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH--------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLD 659 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~ 659 (779)
.++|++.+.||+|+||.||+|+.. ++..||+|++.... .....+++.+|+++++++ +||||+++++++..
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA-TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC-cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 468999999999999999999863 46789999997543 345567899999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccCC-----------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEE
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEEG-----------LKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNIL 728 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~~-----------~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIl 728 (779)
.+..++||||+++++|.+++......+ ...+++..++.++.||+.||+|||+ .+|+||||||+||+
T Consensus 113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIl 189 (334)
T 2pvf_A 113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVL 189 (334)
T ss_dssp SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEE
T ss_pred CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCccceEE
Confidence 999999999999999999997654211 1247899999999999999999997 89999999999999
Q ss_pred EcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 729 LGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 729 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++.++.+||+|||+++...............+|+.|+|||++.+.
T Consensus 190 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 234 (334)
T 2pvf_A 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDR 234 (334)
T ss_dssp ECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHC
T ss_pred EcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCC
Confidence 999999999999999877654333333445678899999988653
No 160
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.95 E-value=2.9e-27 Score=249.02 Aligned_cols=175 Identities=27% Similarity=0.434 Sum_probs=142.8
Q ss_pred hhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHc--CCCCccceEeeEEEeC----C
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTK--VRHRHLVGLLGYCLDG----N 661 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~----~ 661 (779)
+.++|++.+.||+|+||.||+|+. +++.||||++... ....+.+|.+++.. ++||||+++++++... .
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~ 79 (301)
T 3q4u_A 6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST 79 (301)
T ss_dssp CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence 467899999999999999999987 6899999998643 23455666776666 7899999999987653 4
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-----CCCcEEcCCCCCCEEEcCCCcEE
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLA-----HQSFIHRDLKPSNILLGDDMRAK 736 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~-----~~~ivHrDlkp~NIll~~~~~~k 736 (779)
..++||||+++|+|.+++... .+++..++.++.||+.||+|||+.. .++|+||||||+||+++.++.+|
T Consensus 80 ~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~k 153 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQLT------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCC 153 (301)
T ss_dssp EEEEEECCCTTCBHHHHHTTC------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEE
T ss_pred eeEEehhhccCCCHHHHHhhc------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEE
Confidence 578999999999999998432 5899999999999999999999210 27999999999999999999999
Q ss_pred EEeeccceecCCCCCcc--cccccccCCcccccccccccC
Q 004020 737 VADFGLVRLAPDNGKHS--IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 737 l~DFG~a~~~~~~~~~~--~~~~~~gt~~y~APE~l~~~~ 774 (779)
|+|||+++......... ......||+.|+|||++.+..
T Consensus 154 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 193 (301)
T 3q4u_A 154 IADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETI 193 (301)
T ss_dssp ECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCC
T ss_pred EeeCCCeeecccccccccccccccccccceeChhhhcCcC
Confidence 99999998765432221 123347999999999997753
No 161
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=258.33 Aligned_cols=237 Identities=20% Similarity=0.299 Sum_probs=205.0
Q ss_pred ceeeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCC
Q 004020 56 WKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNF 124 (779)
Q Consensus 56 w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l 124 (779)
|..|.|... ..++.|+|++|++++..+..|.++++|++|+|++|+|++..+ .|.++++|++|+|++|+|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 567888742 368999999999999988999999999999999999998886 899999999999999999
Q ss_pred CCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCC-CccCCCCCcccEEEccCCCCCCcC
Q 004020 125 TSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPD-FLGGDTIPGLMHLHLAFNFLQGPI 203 (779)
Q Consensus 125 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~l~~L~~L~L~~N~l~~~~ 203 (779)
+.+++..|..+++|++|+|++|++.. ..+..|.++++|+.|++++|+..+.++. .|. .+++|++|+|++|+++ .+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~--~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFE--GLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTT--TCSSCCEEECTTSCCS-SC
T ss_pred CeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhh--cccccCeecCCCCcCc-cc
Confidence 99999999999999999999999986 5667899999999999999655445554 565 7999999999999999 56
Q ss_pred CCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhhC
Q 004020 204 PLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVN 282 (779)
Q Consensus 204 p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~ 282 (779)
|......+|+.|++++|++..... ..+..+++|+.|+|++|++++..+. |..+++|+.|+|++|+|++..+..|..
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRP---GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred cccCCCcccCEEECCCCccCccCh---hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 753333789999999998876543 3466889999999999999988774 888999999999999999877788889
Q ss_pred CCCCCEEEccCcccccc
Q 004020 283 LHSLAVVNLTNNLFQGQ 299 (779)
Q Consensus 283 l~~L~~L~Ls~N~l~g~ 299 (779)
+++|+.|+|++|++...
T Consensus 278 l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEcCCCCccCC
Confidence 99999999999998753
No 162
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.95 E-value=7.5e-28 Score=252.04 Aligned_cols=175 Identities=33% Similarity=0.558 Sum_probs=138.1
Q ss_pred hhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
..++|++.+.||+|+||.||+|+.. ..||+|+++.........+.+.+|++++++++||||+++++++ ..+..++||
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred CccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 3468999999999999999999764 4699999987665666778899999999999999999999965 556689999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++++|.+++.... ..+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 99 e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 171 (289)
T 3og7_A 99 QWCEGSSLYHHLHASE----TKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKS 171 (289)
T ss_dssp ECCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC------
T ss_pred EecCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEccceeccccc
Confidence 9999999999985433 358899999999999999999997 899999999999999999999999999998654
Q ss_pred CCCCcccccccccCCcccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
............||+.|+|||++..
T Consensus 172 ~~~~~~~~~~~~gt~~y~aPE~~~~ 196 (289)
T 3og7_A 172 RWSGSHQFEQLSGSILWMAPEVIRM 196 (289)
T ss_dssp ------------CCCTTCCHHHHC-
T ss_pred cccccccccccCCCccccCchhhcc
Confidence 3222223344579999999999863
No 163
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.95 E-value=2e-27 Score=255.21 Aligned_cols=170 Identities=31% Similarity=0.482 Sum_probs=146.5
Q ss_pred hcCCcccceecccccEEEEEEEE-cCCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.+.|+..+.||+|+||.||+|+. .+++.||||++..... .....+++.+|++++++++||||+++++++...+..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 35688999999999999999986 5789999999875432 233456789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+. |++.+++.... ..+++..+..++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++..
T Consensus 133 ~e~~~-g~l~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 204 (348)
T 1u5q_A 133 MEYCL-GSASDLLEVHK----KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIM 204 (348)
T ss_dssp EECCS-EEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBSS
T ss_pred EecCC-CCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccCceec
Confidence 99997 68888775433 258999999999999999999997 79999999999999999999999999999765
Q ss_pred CCCCCcccccccccCCcccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
... ....||+.|+|||++.+
T Consensus 205 ~~~------~~~~gt~~y~aPE~~~~ 224 (348)
T 1u5q_A 205 APA------NSFVGTPYWMAPEVILA 224 (348)
T ss_dssp SSB------CCCCSCGGGCCHHHHHT
T ss_pred CCC------CcccCCcceeCHhhhcc
Confidence 432 33579999999999864
No 164
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-26 Score=258.94 Aligned_cols=237 Identities=19% Similarity=0.300 Sum_probs=205.5
Q ss_pred ceeeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCC
Q 004020 56 WKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNF 124 (779)
Q Consensus 56 w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l 124 (779)
|..|.|... .+++.|+|++|+|++..|..|.++++|++|+|++|+|++.++ .|.++++|++|+|++|+|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 567888642 379999999999999999999999999999999999999887 899999999999999999
Q ss_pred CCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCC-CccCCCCCcccEEEccCCCCCCcC
Q 004020 125 TSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPD-FLGGDTIPGLMHLHLAFNFLQGPI 203 (779)
Q Consensus 125 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~l~~L~~L~L~~N~l~~~~ 203 (779)
+.+++..|..+++|++|+|++|++.. ..+..|.++++|+.|++++|+..+.++. .+. .+++|++|+|++|++++ +
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~--~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTT--TCTTCCEEECTTSCCSS-C
T ss_pred CccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhcc--CCCCCCEEECCCCcccc-c
Confidence 99999999999999999999999986 5567899999999999999554445554 564 79999999999999995 4
Q ss_pred CCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhhC
Q 004020 204 PLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVN 282 (779)
Q Consensus 204 p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~ 282 (779)
|......+|+.|++++|.+..... ..+..+++|+.|+|++|++++..+. |..+++|+.|+|++|+|++..+..|..
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRP---GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECG---GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred ccccccccccEEECcCCcCcccCc---ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 643333789999999998876533 4567889999999999999988774 888999999999999999877788889
Q ss_pred CCCCCEEEccCcccccc
Q 004020 283 LHSLAVVNLTNNLFQGQ 299 (779)
Q Consensus 283 l~~L~~L~Ls~N~l~g~ 299 (779)
+++|+.|+|++|++...
T Consensus 289 l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEccCCCcCCC
Confidence 99999999999998754
No 165
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.95 E-value=1.6e-27 Score=252.61 Aligned_cols=181 Identities=29% Similarity=0.452 Sum_probs=152.6
Q ss_pred hcCCcccceecccccEEEEEEEE------cCCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCC
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL------HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGN 661 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~ 661 (779)
.++|++.+.||+|+||.||+|+. .+++.||+|++.... .....+.+.+|+++++++ +||||+++++++...+
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA-HLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch-hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 46899999999999999999975 246789999997543 334557899999999999 8999999999999999
Q ss_pred eEEEEEEecCCCChhhHhhhcccC-------------CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEE
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEE-------------GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNIL 728 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~-------------~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIl 728 (779)
..++||||+++|+|.+++...... ....+++..++.++.||+.||+|||+ ++|+||||||+||+
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil 177 (313)
T 1t46_A 101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNIL 177 (313)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEE
T ss_pred CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEE
Confidence 999999999999999999765321 12248999999999999999999997 89999999999999
Q ss_pred EcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 729 LGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 729 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++.++.+||+|||+++...............||+.|+|||++.+.
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 222 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNC 222 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHC
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCC
Confidence 999999999999999877654333333445688899999988654
No 166
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=5.7e-28 Score=260.54 Aligned_cols=175 Identities=26% Similarity=0.368 Sum_probs=148.9
Q ss_pred hcCCcccceecccccEEEEEEEE----cCCcEEEEEEeccccc--ChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCC
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL----HDGTKIAVKRMESAVV--SEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGN 661 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~ 661 (779)
.++|++.+.||+|+||.||+|+. .+++.||||+++.... .....+.+.+|+++++++ +||||+++++++...+
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36899999999999999999987 3689999999875432 112334577899999999 6999999999999999
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..++||||+++++|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+|||++.++.+||+|||
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~DfG 204 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-----RFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFG 204 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEESCSS
T ss_pred eEEEEeecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcEEEeeCC
Confidence 9999999999999999986543 58899999999999999999996 799999999999999999999999999
Q ss_pred cceecCCCCCcccccccccCCcccccccccc
Q 004020 742 LVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 742 ~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
+++...... .......+||+.|+|||++.+
T Consensus 205 ~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~ 234 (355)
T 1vzo_A 205 LSKEFVADE-TERAYDFCGTIEYMAPDIVRG 234 (355)
T ss_dssp EEEECCGGG-GGGGCGGGSCCTTCCHHHHTT
T ss_pred CCeecccCC-CCcccCcccCcCccChhhhcC
Confidence 998764322 122334579999999999975
No 167
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=1.3e-27 Score=256.80 Aligned_cols=182 Identities=29% Similarity=0.455 Sum_probs=149.2
Q ss_pred hhcCCcccceecccccEEEEEEEE------cCCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeC
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL------HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDG 660 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 660 (779)
..++|++.+.||+|+||.||+|+. .++..||+|++.... .....+.+.+|+.+++++ +||||+++++++...
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 121 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-DSSEREALMSELKMMTQLGSHENIVNLLGACTLS 121 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc-CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence 357899999999999999999986 245689999997543 233456789999999999 899999999999999
Q ss_pred CeEEEEEEecCCCChhhHhhhcccC------------------CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCC
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEE------------------GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDL 722 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~------------------~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDl 722 (779)
+..++||||+++|+|.+++...... ....+++..++.++.||+.||+|||+ ++|+||||
T Consensus 122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Di 198 (344)
T 1rjb_A 122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDL 198 (344)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTC
T ss_pred CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCC
Confidence 9999999999999999999764321 11247899999999999999999997 89999999
Q ss_pred CCCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 723 KPSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 723 kp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
||+||+++.++.+||+|||+++...............||+.|+|||++.+.
T Consensus 199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 249 (344)
T 1rjb_A 199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEG 249 (344)
T ss_dssp SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHC
T ss_pred ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccC
Confidence 999999999999999999999876554333333445688999999988654
No 168
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=256.20 Aligned_cols=168 Identities=32% Similarity=0.441 Sum_probs=139.7
Q ss_pred ccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEEecCC
Q 004020 594 EENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYEYMPQ 672 (779)
Q Consensus 594 ~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 672 (779)
..+.||+|+||.||+|+.. +++.||+|++.... ....+++.+|++++++++||||+++++++.+.+..++||||+++
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~ 170 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG--MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDG 170 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc--cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence 3678999999999999864 68999999987643 34557899999999999999999999999999999999999999
Q ss_pred CChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE--cCCCcEEEEeeccceecCCCC
Q 004020 673 GTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL--GDDMRAKVADFGLVRLAPDNG 750 (779)
Q Consensus 673 gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll--~~~~~~kl~DFG~a~~~~~~~ 750 (779)
++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+|||+ +.++.+||+|||+++......
T Consensus 171 ~~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~ 243 (373)
T 2x4f_A 171 GELFDRIIDES----YNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE 243 (373)
T ss_dssp CEEHHHHHHTG----GGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC
T ss_pred CcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc
Confidence 99999886543 258899999999999999999997 899999999999999 567899999999998775432
Q ss_pred CcccccccccCCccccccccccc
Q 004020 751 KHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 751 ~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
. .....||+.|+|||++.+.
T Consensus 244 ~---~~~~~gt~~y~aPE~~~~~ 263 (373)
T 2x4f_A 244 K---LKVNFGTPEFLAPEVVNYD 263 (373)
T ss_dssp B---CCCCCSSCTTCCHHHHTTC
T ss_pred c---cccccCCCcEeChhhccCC
Confidence 2 2334699999999998654
No 169
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.95 E-value=1.7e-27 Score=268.15 Aligned_cols=175 Identities=30% Similarity=0.438 Sum_probs=150.6
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|++.+.||+|+||.||+|+.. +++.||||++............+.+|++++++++||||+++++++.+.+..++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 5578999999999999999999875 789999999976544444567889999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEc---CCCcEEEEeeccc
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLG---DDMRAKVADFGLV 743 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~---~~~~~kl~DFG~a 743 (779)
|||+++++|.+.+.... .+++..+..++.||+.||.|||+ .+|+||||||+||+++ .++.+||+|||++
T Consensus 100 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a 171 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK-----RFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171 (486)
T ss_dssp ECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEECSCSCT
T ss_pred EEcCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEEECCcC
Confidence 99999999999886543 58999999999999999999997 8999999999999995 4567999999999
Q ss_pred eecCCCCCcccccccccCCccccccccccc
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+...... .....+||+.|+|||++.+.
T Consensus 172 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~ 198 (486)
T 3mwu_A 172 TCFQQNT---KMKDRIGTAYYIAPEVLRGT 198 (486)
T ss_dssp TTBCCC-------CCTTGGGGCCGGGGGSC
T ss_pred eECCCCC---ccCCCcCCCCCCCHHHhCCC
Confidence 8664432 22345799999999998764
No 170
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.95 E-value=1.5e-27 Score=256.53 Aligned_cols=185 Identities=24% Similarity=0.303 Sum_probs=148.0
Q ss_pred HHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc---ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC
Q 004020 585 LRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV---SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG 660 (779)
Q Consensus 585 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 660 (779)
+..+.++|++.+.||+|+||.||+|+.. +++.||+|++..... .....+.+.+|++++++++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 3456778999999999999999999774 688999999875432 234567899999999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCC-----------------------------------CCCCCHHHHHHHHHHHHHH
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEG-----------------------------------LKPLEWTRRLTIALDVARG 705 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~-----------------------------------~~~~~~~~~~~i~~qi~~~ 705 (779)
+..++||||+++|+|.+++....... ...+++..++.++.||+.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999985321110 1123567788999999999
Q ss_pred HHHHHcCCCCCcEEcCCCCCCEEEcCCC--cEEEEeeccceecCCCCC--cccccccccCCcccccccccc
Q 004020 706 VEYLHGLAHQSFIHRDLKPSNILLGDDM--RAKVADFGLVRLAPDNGK--HSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 706 L~~LH~~~~~~ivHrDlkp~NIll~~~~--~~kl~DFG~a~~~~~~~~--~~~~~~~~gt~~y~APE~l~~ 772 (779)
|+|||+ .+|+||||||+||+++.++ .+||+|||+++....... ........||+.|+|||++.+
T Consensus 181 l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 248 (345)
T 3hko_A 181 LHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNT 248 (345)
T ss_dssp HHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTC
T ss_pred HHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhcc
Confidence 999997 7999999999999998776 899999999987643211 112344579999999999875
No 171
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.94 E-value=2e-27 Score=253.94 Aligned_cols=179 Identities=25% Similarity=0.413 Sum_probs=148.2
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..........+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 468999999999999999999876 5899999998766555555677889999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||++++++.++.... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 104 e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 175 (331)
T 4aaa_A 104 EFVDHTILDDLELFP-----NGLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFARTLA 175 (331)
T ss_dssp ECCSEEHHHHHHHST-----TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred ecCCcchHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCCCceeec
Confidence 999999888775432 248899999999999999999996 899999999999999999999999999998664
Q ss_pred CCCCcccccccccCCcccccccccccCCCC
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
.... ......||+.|+|||++.+...++
T Consensus 176 ~~~~--~~~~~~~t~~y~aPE~~~~~~~~~ 203 (331)
T 4aaa_A 176 APGE--VYDDEVATRWYRAPELLVGDVKYG 203 (331)
T ss_dssp ----------CCCCCTTCCHHHHTTCTTCC
T ss_pred CCcc--ccCCCcCCccccCcccccCCCCcc
Confidence 4322 223456999999999998764443
No 172
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.94 E-value=2.6e-27 Score=267.16 Aligned_cols=175 Identities=29% Similarity=0.430 Sum_probs=145.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|++.+.||+|+||.||+|+.. ++..||+|++............+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 4567999999999999999999876 688999999976654444557789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC---CCcEEEEeeccc
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD---DMRAKVADFGLV 743 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~---~~~~kl~DFG~a 743 (779)
|||+++|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++. ++.+||+|||++
T Consensus 115 ~e~~~~g~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a 186 (494)
T 3lij_A 115 MECYKGGELFDEIIHRM-----KFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLS 186 (494)
T ss_dssp EECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEEECCCC
Confidence 99999999999886543 58899999999999999999996 89999999999999976 455999999999
Q ss_pred eecCCCCCcccccccccCCccccccccccc
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+...... .....+||+.|+|||++.+.
T Consensus 187 ~~~~~~~---~~~~~~gt~~y~aPE~l~~~ 213 (494)
T 3lij_A 187 AVFENQK---KMKERLGTAYYIAPEVLRKK 213 (494)
T ss_dssp EECBTTB---CBCCCCSCTTTCCHHHHTTC
T ss_pred eECCCCc---cccccCCCcCeeCHHHHccc
Confidence 8775432 22345799999999998653
No 173
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.94 E-value=1.1e-27 Score=250.86 Aligned_cols=174 Identities=25% Similarity=0.431 Sum_probs=147.7
Q ss_pred hcCCcccceecccccEEEEEEEEcC-C-------cEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHD-G-------TKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG 660 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 660 (779)
.++|++.+.||+|+||.||+|+... + ..||+|++.... ....+.+.+|++++++++||||+++++++.++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 84 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH--RNYSESFFEAASMMSKLSHKHLVLNYGVCVCG 84 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG--GGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc--HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC
Confidence 4679999999999999999997652 3 579999986543 34557899999999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc------
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR------ 734 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~------ 734 (779)
+..++||||+++++|.+++..... .+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.
T Consensus 85 ~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~ 157 (289)
T 4fvq_A 85 DENILVQEFVKFGSLDTYLKKNKN----CINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKTGNP 157 (289)
T ss_dssp TCCEEEEECCTTCBHHHHHHHTGG----GCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGGGTBC
T ss_pred CCCEEEEECCCCCCHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCccccccc
Confidence 999999999999999999965432 48899999999999999999997 89999999999999998887
Q ss_pred --EEEEeeccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 735 --AKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 735 --~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+||+|||+++..... ....||+.|+|||++.+...++
T Consensus 158 ~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~ 196 (289)
T 4fvq_A 158 PFIKLSDPGISITVLPK------DILQERIPWVPPECIENPKNLN 196 (289)
T ss_dssp CEEEECCCCSCTTTSCH------HHHHHTTTTSCHHHHHCGGGCC
T ss_pred ceeeeccCcccccccCc------cccCCcCcccCHHHhCCCCCCC
Confidence 999999998654321 2345889999999998644433
No 174
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.94 E-value=2e-27 Score=256.12 Aligned_cols=181 Identities=25% Similarity=0.368 Sum_probs=150.0
Q ss_pred hcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC-------
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG------- 660 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~------- 660 (779)
.++|++.+.||+|+||.||+|+. .+++.||+|++............+.+|+++++.++||||+++++++...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 36899999999999999999987 4789999999876554444456788999999999999999999999873
Q ss_pred -CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEe
Q 004020 661 -NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVAD 739 (779)
Q Consensus 661 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~D 739 (779)
+..++||||+++ ++.+.+.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~D 167 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVL----VKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLAD 167 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECC
T ss_pred CceEEEEEeccCC-CHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCCEEEcc
Confidence 468999999975 7777764432 258999999999999999999996 8999999999999999999999999
Q ss_pred eccceecCCCCC--cccccccccCCcccccccccccCCCC
Q 004020 740 FGLVRLAPDNGK--HSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 740 FG~a~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
||+++....... ........||+.|+|||++.+...++
T Consensus 168 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ 207 (351)
T 3mi9_A 168 FGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYG 207 (351)
T ss_dssp CTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCC
T ss_pred chhcccccccccccccccCCcccccCccCchhhcCCCCCC
Confidence 999987653221 11224457899999999998765544
No 175
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.94 E-value=2.4e-27 Score=246.32 Aligned_cols=175 Identities=28% Similarity=0.437 Sum_probs=129.6
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++...... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 368999999999999999999764 6899999999765432 23356789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+ ++++.+++.... .+++..++.++.|++.||+|||+ .+|+||||||+||++++++.+||+|||+++..
T Consensus 92 ~e~~-~~~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 162 (275)
T 2eue_A 92 IEYA-GNELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFGLSNIM 162 (275)
T ss_dssp EECC-CEEHHHHHHTSS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCSSCC---
T ss_pred ehhc-CCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCeeccCChHhEEECCCCCEEEeecccceec
Confidence 9999 678888775432 58899999999999999999996 89999999999999999999999999999866
Q ss_pred CCCCCcccccccccCCcccccccccccCC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
..... .....||+.|+|||++.+...
T Consensus 163 ~~~~~---~~~~~~t~~y~aPE~~~~~~~ 188 (275)
T 2eue_A 163 TDGNF---LKTSCGSPNYAAPEVISGKLY 188 (275)
T ss_dssp ---------------CTTCCHHHHCC---
T ss_pred cCccc---ccCCCCCcCcCCceeeeCCCC
Confidence 44321 234469999999999876543
No 176
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.94 E-value=2.3e-27 Score=247.84 Aligned_cols=177 Identities=28% Similarity=0.424 Sum_probs=146.4
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|.+.+.||+|+||.||+|+.. ++..||+|++.... .....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 20 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 98 (285)
T 3is5_A 20 IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDR-SQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV 98 (285)
T ss_dssp HHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG-CCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccc-cchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence 4468999999999999999999875 68899999987654 233457789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE---cCCCcEEEEeeccc
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL---GDDMRAKVADFGLV 743 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll---~~~~~~kl~DFG~a 743 (779)
|||+++++|.+++......+ ..+++..++.++.|++.||+|||+ .+|+||||||+||++ +.++.+||+|||++
T Consensus 99 ~e~~~~~~L~~~l~~~~~~~-~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a 174 (285)
T 3is5_A 99 METCEGGELLERIVSAQARG-KALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174 (285)
T ss_dssp ECCCSCCBHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECCCCCC
T ss_pred EEeCCCCcHHHHHHhhhhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEeeecc
Confidence 99999999999886543222 358999999999999999999996 899999999999999 45688999999999
Q ss_pred eecCCCCCcccccccccCCcccccccccc
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
+...... ......||+.|+|||++.+
T Consensus 175 ~~~~~~~---~~~~~~~t~~y~aPE~~~~ 200 (285)
T 3is5_A 175 ELFKSDE---HSTNAAGTALYMAPEVFKR 200 (285)
T ss_dssp CC-------------CTTGGGCCHHHHTT
T ss_pred eecCCcc---cCcCcccccCcCChHHhcc
Confidence 8664432 2234569999999999864
No 177
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.94 E-value=2e-27 Score=255.56 Aligned_cols=171 Identities=29% Similarity=0.441 Sum_probs=133.5
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++.... ..+.+.+|++++++++||||+++++++...+..++|
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 126 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV 126 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence 4678999999999999999999876 57899999987542 335688999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC---CCcEEEEeeccc
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD---DMRAKVADFGLV 743 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~---~~~~kl~DFG~a 743 (779)
|||+++++|.+++... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++. ++.+||+|||++
T Consensus 127 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a 198 (349)
T 2w4o_A 127 LELVTGGELFDRIVEK-----GYYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLS 198 (349)
T ss_dssp ECCCCSCBHHHHHTTC-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCCC--
T ss_pred EEeCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccCccc
Confidence 9999999999988543 258899999999999999999997 79999999999999975 889999999999
Q ss_pred eecCCCCCcccccccccCCccccccccccc
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+...... ......||+.|+|||++.+.
T Consensus 199 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~ 225 (349)
T 2w4o_A 199 KIVEHQV---LMKTVCGTPGYCAPEILRGC 225 (349)
T ss_dssp -----------------CGGGSCHHHHTTC
T ss_pred cccCccc---ccccccCCCCccCHHHhcCC
Confidence 8664321 22345799999999998764
No 178
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.6e-29 Score=265.97 Aligned_cols=263 Identities=18% Similarity=0.197 Sum_probs=209.8
Q ss_pred CCCCC-CCCcceeeEeCC-CCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccc-cCCC-CCC-------CCCCcc
Q 004020 47 GWTDP-DPCKWKHIQCSP-SNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLT-GQIP-SLS-------GLSSLQ 115 (779)
Q Consensus 47 ~w~~~-~~C~w~gv~c~~-~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~-~~~-------~l~~L~ 115 (779)
+|... .|+.+..+.... ..+++.|++++|++ .+|..+... |++|+|++|+++ +.++ .+. ++++|+
T Consensus 23 ~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~ 98 (312)
T 1wwl_A 23 DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98 (312)
T ss_dssp CGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred chHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence 56543 455565544322 34688899999999 788877765 999999999994 4455 344 799999
Q ss_pred EEecCCCCCCCCCcccc--cCCCCccEEEcccCCCCCCCCcccccCC-----CCCceEeccCceeEeecCCCccCCCCCc
Q 004020 116 EVLFDDNNFTSVPSDFF--KGLTSLQTISLDYNSFDSWVIPESLKDA-----TGLQRFSANGANITGTIPDFLGGDTIPG 188 (779)
Q Consensus 116 ~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~~~l~~ 188 (779)
+|+|++|++++..+..+ ..+++|++|+|++|++.+ .|..+..+ ++|++|++++|++++..|+.++ .+++
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~--~l~~ 174 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR--VFPA 174 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC--CCSS
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc--cCCC
Confidence 99999999996544444 899999999999999987 38888887 9999999999999988888887 7999
Q ss_pred ccEEEccCCCCCCcC--CCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCC--C-C-CCCCCCC
Q 004020 189 LMHLHLAFNFLQGPI--PLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPL--P-D-LSGLSSL 262 (779)
Q Consensus 189 L~~L~L~~N~l~~~~--p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~-~-~~~l~~L 262 (779)
|++|+|++|++.+.+ |..+. +..+++|++|+|++|++++.. + . +..+++|
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALC------------------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSC------------------------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred CCEEECCCCCcCcchHHHHHHH------------------------hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 999999999988652 22221 136889999999999998532 2 2 4578899
Q ss_pred cEEEccCCccccccC-hhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccC
Q 004020 263 QDFSVRDNQLTGIVP-SSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSV 341 (779)
Q Consensus 263 ~~L~l~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (779)
++|++++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~------------------------------------ 273 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP------------------------------------ 273 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC------------------------------------
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc------------------------------------
Confidence 999999999998775 56667899999999999998 4443110
Q ss_pred CCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccc
Q 004020 342 GYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTG 408 (779)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 408 (779)
++|+.|+|++|+|++. |. +..+++|++|+|++|+|++
T Consensus 274 ----------------------------~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 ----------------------------AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ----------------------------SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ----------------------------CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 3799999999999976 66 9999999999999999985
No 179
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.94 E-value=1.6e-27 Score=254.11 Aligned_cols=175 Identities=31% Similarity=0.491 Sum_probs=139.6
Q ss_pred cCCcccceecccccEEEEEEEEc-CCc----EEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGT----KIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 664 (779)
++|++.+.||+|+||.||+|++. +++ +||+|.+.... .....+++.+|+.++++++||||+++++++.... .+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT-SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc-CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 57999999999999999999864 344 45888775432 2344578999999999999999999999998755 78
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+|+||+++|+|.+++.... ..+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+++
T Consensus 93 ~v~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~ 165 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAK 165 (327)
T ss_dssp EEEECCTTCBHHHHHHHST----TSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTHHH
T ss_pred EEEEecCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEccCccee
Confidence 9999999999999986643 258899999999999999999997 799999999999999999999999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...............||+.|+|||++.+.
T Consensus 166 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 194 (327)
T 3poz_A 166 LLGAEEKEYHAEGGKVPIKWMALESILHR 194 (327)
T ss_dssp HHTTTCC-------CCCGGGSCHHHHHHC
T ss_pred EccCCcccccccCCCccccccChHHhccC
Confidence 77554333333445678899999998754
No 180
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.94 E-value=3.6e-27 Score=251.02 Aligned_cols=164 Identities=29% Similarity=0.392 Sum_probs=125.2
Q ss_pred cceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEEeCCeEEEEEEecCC
Q 004020 595 ENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCLDGNERLLVYEYMPQ 672 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~ 672 (779)
.+.||+|+||.||+|+.. +++.||||++... ....+.+|+.+++.+. ||||+++++++.+.+..|+||||+++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~ 90 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNG 90 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh-----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCC
Confidence 378999999999999875 6899999998643 3456789999999997 99999999999999999999999999
Q ss_pred CChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC---cEEEEeeccceecCCC
Q 004020 673 GTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM---RAKVADFGLVRLAPDN 749 (779)
Q Consensus 673 gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~---~~kl~DFG~a~~~~~~ 749 (779)
|+|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++ .+||+|||+++.....
T Consensus 91 ~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~ 162 (325)
T 3kn6_A 91 GELFERIKKKK-----HFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD 162 (325)
T ss_dssp CBHHHHHHHCS-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-
T ss_pred CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEeccccceecCCC
Confidence 99999986542 58999999999999999999996 8999999999999997665 8999999999876543
Q ss_pred CCcccccccccCCccccccccccc
Q 004020 750 GKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 750 ~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.. ......||+.|+|||++.+.
T Consensus 163 ~~--~~~~~~~t~~y~aPE~~~~~ 184 (325)
T 3kn6_A 163 NQ--PLKTPCFTLHYAAPELLNQN 184 (325)
T ss_dssp -----------------------C
T ss_pred CC--cccccCCCcCccCHHHhcCC
Confidence 22 22345689999999998654
No 181
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.94 E-value=1.9e-27 Score=254.05 Aligned_cols=174 Identities=21% Similarity=0.293 Sum_probs=147.4
Q ss_pred hcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+++.+|+++++++ +||||+++++++...+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv 83 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMV 83 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEE
Confidence 46899999999999999999986 5789999999865431 23578999999999 899999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc-----EEEEeec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR-----AKVADFG 741 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~-----~kl~DFG 741 (779)
|||+ +++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++. +||+|||
T Consensus 84 ~e~~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg 155 (330)
T 2izr_A 84 LELL-GPSLEDLFDLCD----RTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFA 155 (330)
T ss_dssp EECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEECCCT
T ss_pred EEeC-CCCHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEEEcc
Confidence 9999 899999986542 258999999999999999999997 79999999999999998887 9999999
Q ss_pred cceecCCCCCcc-----cccccccCCcccccccccccC
Q 004020 742 LVRLAPDNGKHS-----IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 742 ~a~~~~~~~~~~-----~~~~~~gt~~y~APE~l~~~~ 774 (779)
+++......... ......||+.|+|||++.+..
T Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 193 (330)
T 2izr_A 156 LAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKE 193 (330)
T ss_dssp TCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC
T ss_pred cceeeecCCCCccccccccCCcCCCccccChHHHcCCC
Confidence 998765432211 123567999999999987643
No 182
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.94 E-value=3e-27 Score=275.06 Aligned_cols=176 Identities=28% Similarity=0.366 Sum_probs=150.8
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 664 (779)
..++|++.+.||+|+||.||+|+.. +++.||||+++.... .....+.+..|..++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 3568999999999999999999875 688999999976432 223446788999999988 6999999999999999999
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++|+|.+++.... .+++..++.|+.||+.||+|||+ ++|+||||||+|||++.++++||+|||+|+
T Consensus 419 lV~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~DFGla~ 490 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG-----RFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCK 490 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEECCCTTCE
T ss_pred EEEeCcCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEeecceee
Confidence 9999999999999986543 58999999999999999999997 899999999999999999999999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
....... .....+||+.|+|||++.+.
T Consensus 491 ~~~~~~~--~~~~~~GT~~Y~APE~l~~~ 517 (674)
T 3pfq_A 491 ENIWDGV--TTKTFCGTPDYIAPEIIAYQ 517 (674)
T ss_dssp ECCCTTC--CBCCCCSCSSSCCHHHHTCC
T ss_pred ccccCCc--ccccccCCCcccCHhhhcCC
Confidence 6543322 23456899999999998754
No 183
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.94 E-value=3.7e-27 Score=248.39 Aligned_cols=176 Identities=26% Similarity=0.520 Sum_probs=146.5
Q ss_pred cCCcccceecccccEEEEEEEE-----cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC--Ce
Q 004020 590 NNFSEENVLGRGGFGTVYKGEL-----HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG--NE 662 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~ 662 (779)
++|++.+.||+|+||.||+|++ .+++.||+|++.... .....+.+.+|++++++++||||+++++++... ..
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc-cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 4688999999999999999984 368999999997543 233457789999999999999999999999877 66
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecc
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGL 742 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~ 742 (779)
.++||||+++++|.+++.... ..+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~ 172 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKNK----NKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFGL 172 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTT
T ss_pred EEEEEEeCCCCcHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECcccc
Confidence 899999999999999986543 258899999999999999999996 8999999999999999999999999999
Q ss_pred ceecCCCCCc-ccccccccCCccccccccccc
Q 004020 743 VRLAPDNGKH-SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~ 773 (779)
++........ .......||..|+|||++.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 204 (302)
T 4e5w_A 173 TKAIETDKEYYTVKDDRDSPVFWYAPECLMQS 204 (302)
T ss_dssp CEECCTTCCEEECCCCTTCCGGGCCHHHHHHC
T ss_pred cccccCCCcceeccCCCCCCccccCCeeecCC
Confidence 9877554322 223345688899999988654
No 184
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.94 E-value=4.3e-27 Score=250.18 Aligned_cols=175 Identities=27% Similarity=0.389 Sum_probs=150.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh----hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE----KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++....... ...+++.+|+.++++++||||+++++++.+.+.
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 89 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD 89 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence 4567999999999999999999876 68999999997654222 135679999999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC----cEEEE
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM----RAKVA 738 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~----~~kl~ 738 (779)
.++||||+++++|.+++... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++ .+||+
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~~~kl~ 161 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLAQK-----ESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLI 161 (321)
T ss_dssp EEEEECCCCSCBHHHHHHTC-----SCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred EEEEEEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcCCEEEc
Confidence 99999999999999998543 257899999999999999999997 8999999999999999887 79999
Q ss_pred eeccceecCCCCCcccccccccCCccccccccccc
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|||+++....... .....||+.|+|||++.+.
T Consensus 162 Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~ 193 (321)
T 2a2a_A 162 DFGLAHEIEDGVE---FKNIFGTPEFVAPEIVNYE 193 (321)
T ss_dssp CCTTCEECCTTCC---CCCCCSCGGGCCHHHHTTC
T ss_pred cCccceecCcccc---ccccCCCCCccCcccccCC
Confidence 9999987654321 2345699999999998754
No 185
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.6e-27 Score=255.15 Aligned_cols=180 Identities=24% Similarity=0.315 Sum_probs=152.3
Q ss_pred eeHHHHHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-----CCccceE
Q 004020 580 ISIQVLRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-----HRHLVGL 653 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~~ 653 (779)
+++++...+.++|++.+.||+|+||.||+|+.. +++.||||++... ......+.+|+++++.+. ||||+++
T Consensus 25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~ 101 (360)
T 3llt_A 25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI---KKYTRSAKIEADILKKIQNDDINNNNIVKY 101 (360)
T ss_dssp CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---HHHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred eeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc---hhhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence 344444556789999999999999999999874 6899999998642 344566788999999996 9999999
Q ss_pred eeEEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC--
Q 004020 654 LGYCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD-- 731 (779)
Q Consensus 654 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~-- 731 (779)
++++...+..++||||+ +++|.+++..... ..+++..+..++.||+.||+|||+ ++|+||||||+|||++.
T Consensus 102 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~ 174 (360)
T 3llt_A 102 HGKFMYYDHMCLIFEPL-GPSLYEIITRNNY---NGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPENILLDDPY 174 (360)
T ss_dssp EEEEEETTEEEEEECCC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCTT
T ss_pred cceeeECCeeEEEEcCC-CCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCcccEEEcccc
Confidence 99999999999999999 8999999865432 248899999999999999999996 89999999999999975
Q ss_pred -----------------------CCcEEEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 732 -----------------------DMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 732 -----------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
++.+||+|||+++..... .....||+.|+|||++.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~ 235 (360)
T 3llt_A 175 FEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVILNLG 235 (360)
T ss_dssp CCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHHTTCC
T ss_pred ccccccchhcccccccccccccCCCCEEEEeccCceecCCC-----CcCccCcccccCcHHHcCCC
Confidence 789999999999875432 23457999999999987653
No 186
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.94 E-value=9.9e-28 Score=255.42 Aligned_cols=177 Identities=25% Similarity=0.396 Sum_probs=141.5
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
++|++.+.||+|+||.||+|+.. +++.||+|++..... ......+.+|++++++++||||+++++++...+..++|||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE 80 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC-------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc-cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEec
Confidence 57999999999999999999876 789999999865431 1112245679999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
|++ ++|.+++.... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++....
T Consensus 81 ~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~ 152 (324)
T 3mtl_A 81 YLD-KDLKQYLDDCG----NIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLARAKSI 152 (324)
T ss_dssp CCS-EEHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCGGGEEECTTCCEEECSSSEEECC--
T ss_pred ccc-cCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCHHHEEECCCCCEEEccCcccccccC
Confidence 997 58888886543 258899999999999999999996 8999999999999999999999999999986543
Q ss_pred CCCcccccccccCCcccccccccccCCCC
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
.. .......||+.|+|||++.+...++
T Consensus 153 ~~--~~~~~~~~t~~y~aPE~~~~~~~~~ 179 (324)
T 3mtl_A 153 PT--KTYDNEVVTLWYRPPDILLGSTDYS 179 (324)
T ss_dssp ------------CGGGCCHHHHTTCCCCC
T ss_pred Cc--cccccccCcccccChhhhcCCCCCC
Confidence 21 1223456899999999998765544
No 187
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.94 E-value=1.2e-26 Score=243.42 Aligned_cols=175 Identities=27% Similarity=0.440 Sum_probs=151.3
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|.+.+.||+|+||.||+|+.. +++.||+|++..... .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 467999999999999999999876 578999999876542 344567789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++.... .+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++..
T Consensus 94 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 165 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-----ALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV 165 (294)
T ss_dssp EECCTTCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEeccCceec
Confidence 99999999999885542 58899999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... ......||+.|+|||++.+.
T Consensus 166 ~~~~~--~~~~~~~~~~y~aPE~~~~~ 190 (294)
T 2rku_A 166 EYDGE--RKKVLCGTPNYIAPEVLSKK 190 (294)
T ss_dssp CSTTC--CBCCCCSCCSSCCHHHHTTS
T ss_pred ccCcc--ccccccCCCCcCCcchhccC
Confidence 54322 22345799999999998654
No 188
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.94 E-value=3.8e-27 Score=245.17 Aligned_cols=177 Identities=31% Similarity=0.520 Sum_probs=135.3
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
..++|++.+.||+|+||.||+|+. .+++.||+|++...... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 88 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL 88 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence 346799999999999999999987 47899999998654321 1234678999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++++|.+++.... ..+++..++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||+++.
T Consensus 89 v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~ 161 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKNRV----KPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLATQ 161 (278)
T ss_dssp EEECCTTEEHHHHHHTCS----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEecCCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEeecceee
Confidence 999999999999986532 358999999999999999999996 8999999999999999999999999999987
Q ss_pred cCCCCCcccccccccCCccccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...... ......||+.|+|||++.+.
T Consensus 162 ~~~~~~--~~~~~~~~~~y~aPE~~~~~ 187 (278)
T 3cok_A 162 LKMPHE--KHYTLCGTPNYISPEIATRS 187 (278)
T ss_dssp CC--------------------------
T ss_pred ccCCCC--cceeccCCCCcCCcchhcCC
Confidence 653321 12335689999999998754
No 189
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.94 E-value=2.7e-27 Score=245.12 Aligned_cols=172 Identities=22% Similarity=0.340 Sum_probs=149.8
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC--CeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG--NERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. ++.||+|++..........+++.+|+.++++++||||+++++++.+. +..++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 357999999999999999999885 89999999987665666678899999999999999999999999887 778999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC--cEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQS--FIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
|||+++|+|.+++..... ..+++..++.++.||+.||+|||+ .+ |+||||||+||+++.++.++|+|||++.
T Consensus 88 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~ 161 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTN---FVVDQSQAVKFALDMARGMAFLHT---LEPLIPRHALNSRSVMIDEDMTARISMADVKF 161 (271)
T ss_dssp EECCTTCBHHHHHHSCSS---CCCCHHHHHHHHHHHHHHHHHHTT---SSSCCTTCCCSGGGEEECTTSCEEEEGGGSCC
T ss_pred ecccCCCcHHHHHhhccc---CCCCHHHHHHHHHHHHHHHHHHhc---CCCceecCCCccceEEEcCCcceeEEecccee
Confidence 999999999999965432 258999999999999999999996 67 9999999999999999999999999875
Q ss_pred ecCCCCCcccccccccCCcccccccccccC
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
.... ....||+.|+|||++.+..
T Consensus 162 ~~~~-------~~~~~t~~y~aPE~~~~~~ 184 (271)
T 3kmu_A 162 SFQS-------PGRMYAPAWVAPEALQKKP 184 (271)
T ss_dssp TTSC-------TTCBSCGGGSCHHHHHSCG
T ss_pred eecc-------cCccCCccccChhhhccCC
Confidence 4322 2346899999999987653
No 190
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.94 E-value=7.8e-27 Score=263.92 Aligned_cols=175 Identities=27% Similarity=0.428 Sum_probs=147.4
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh-----------hHHHHHHHHHHHHHcCCCCccceEee
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE-----------KGFAEFKSEIAVLTKVRHRHLVGLLG 655 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-----------~~~~~~~~E~~~l~~l~h~niv~~~~ 655 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++....... ...+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 5678999999999999999999875 58899999997644221 23467899999999999999999999
Q ss_pred EEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC--
Q 004020 656 YCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM-- 733 (779)
Q Consensus 656 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~-- 733 (779)
++.+.+..++||||+++|+|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+||+++.++
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~ 185 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH-----KFDECDAANIMKQILSGICYLHK---HNIVHRDIKPENILLENKNSL 185 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESSTTCC
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEecCCCC
Confidence 9999999999999999999999886543 58999999999999999999997 8999999999999998775
Q ss_pred -cEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 734 -RAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 734 -~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.+||+|||+++...... ......||+.|+|||++.+.
T Consensus 186 ~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~ 223 (504)
T 3q5i_A 186 LNIKIVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLKKK 223 (504)
T ss_dssp SSEEECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHTTC
T ss_pred ccEEEEECCCCEEcCCCC---ccccccCCcCCCCHHHhccC
Confidence 69999999998775432 22345799999999998753
No 191
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.94 E-value=1.8e-27 Score=252.20 Aligned_cols=186 Identities=31% Similarity=0.472 Sum_probs=142.0
Q ss_pred HHHhhcCCcccceecccccEEEEEEEEc----CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC
Q 004020 585 LRNVTNNFSEENVLGRGGFGTVYKGELH----DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG 660 (779)
Q Consensus 585 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 660 (779)
.....++|.+.+.||+|+||.||+|+.. ++..||+|++..........+.+.+|+.++++++||||+++++++...
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~ 108 (313)
T 3brb_A 29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM 108 (313)
T ss_dssp TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence 3344578999999999999999999764 345899999987665566678899999999999999999999999876
Q ss_pred Ce-----EEEEEEecCCCChhhHhhhccc-CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc
Q 004020 661 NE-----RLLVYEYMPQGTLSRHLFNRKE-EGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR 734 (779)
Q Consensus 661 ~~-----~~lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~ 734 (779)
+. .++||||+++++|.+++..... .....+++..++.++.||+.||.|||+ ++|+||||||+||+++.++.
T Consensus 109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~ 185 (313)
T 3brb_A 109 SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLRDDMT 185 (313)
T ss_dssp ------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEECTTSC
T ss_pred cccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCc
Confidence 53 4999999999999999854332 233468999999999999999999996 89999999999999999999
Q ss_pred EEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 735 AKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 735 ~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+||+|||+++...............+++.|+|||++.+.
T Consensus 186 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 224 (313)
T 3brb_A 186 VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADR 224 (313)
T ss_dssp EEECSCSCC----------------CCGGGSCHHHHHSS
T ss_pred EEEeecCcceecccccccCcccccCCCccccCchhhcCC
Confidence 999999999876543322223344678899999998654
No 192
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.94 E-value=8.8e-27 Score=252.13 Aligned_cols=182 Identities=30% Similarity=0.456 Sum_probs=155.5
Q ss_pred eHHHHHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc--C----hhHHHHHHHHHHHHHcC-CCCccce
Q 004020 581 SIQVLRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV--S----EKGFAEFKSEIAVLTKV-RHRHLVG 652 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~----~~~~~~~~~E~~~l~~l-~h~niv~ 652 (779)
.......+.++|++.+.||+|+||.||+|+.. +|+.||||++..... . ....+.+.+|+.+++++ +||||++
T Consensus 85 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~ 164 (365)
T 2y7j_A 85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIIT 164 (365)
T ss_dssp HHHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCC
T ss_pred cchhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 44556677788999999999999999999885 799999999865431 1 12245688999999999 7999999
Q ss_pred EeeEEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC
Q 004020 653 LLGYCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD 732 (779)
Q Consensus 653 ~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~ 732 (779)
+++++...+..++||||+++++|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+||+++.+
T Consensus 165 ~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~ 236 (365)
T 2y7j_A 165 LIDSYESSSFMFLVFDLMRKGELFDYLTEKV-----ALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDN 236 (365)
T ss_dssp EEEEEEBSSEEEEEECCCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTT
T ss_pred EEEEEeeCCEEEEEEEeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCC
Confidence 9999999999999999999999999986542 58899999999999999999996 799999999999999999
Q ss_pred CcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 733 MRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 733 ~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+.+||+|||++........ .....||+.|+|||++.+.
T Consensus 237 ~~ikl~DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~ 274 (365)
T 2y7j_A 237 MQIRLSDFGFSCHLEPGEK---LRELCGTPGYLAPEILKCS 274 (365)
T ss_dssp CCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHT
T ss_pred CCEEEEecCcccccCCCcc---cccCCCCCCccChhhcccc
Confidence 9999999999987654322 2345799999999998753
No 193
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.94 E-value=4.7e-27 Score=259.02 Aligned_cols=174 Identities=26% Similarity=0.421 Sum_probs=137.9
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC------hhHHHHHHHHHHHHHcCCCCccceEeeEEEe
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS------EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD 659 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 659 (779)
...++|.+.+.||+|+||.||+|... +++.||+|++...... ......+.+|++++++++||||+++++++.
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~- 210 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD- 210 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence 45689999999999999999999765 6899999998754321 112235789999999999999999999975
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC---CcEE
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD---MRAK 736 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~---~~~k 736 (779)
.+..++||||+++|+|.+++... ..+++..+..++.||+.||+|||+ ++|+||||||+|||++.+ +.+|
T Consensus 211 ~~~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~~~~k 282 (419)
T 3i6u_A 211 AEDYYIVLELMEGGELFDKVVGN-----KRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIK 282 (419)
T ss_dssp SSEEEEEEECCTTCBGGGGTSSS-----CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSSCCEE
T ss_pred cCceEEEEEcCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCcceEE
Confidence 45689999999999999888543 258999999999999999999996 799999999999999754 4599
Q ss_pred EEeeccceecCCCCCcccccccccCCcccccccccc
Q 004020 737 VADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 737 l~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
|+|||+++..... ......+||+.|+|||++.+
T Consensus 283 l~DFG~a~~~~~~---~~~~~~~gt~~y~aPE~~~~ 315 (419)
T 3i6u_A 283 ITDFGHSKILGET---SLMRTLCGTPTYLAPEVLVS 315 (419)
T ss_dssp ECCSSTTTSCC--------------CTTCCTTTTC-
T ss_pred EeecccceecCCC---ccccccCCCCCccCceeeec
Confidence 9999999876432 22244679999999999864
No 194
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.94 E-value=1e-26 Score=248.88 Aligned_cols=175 Identities=27% Similarity=0.440 Sum_probs=151.5
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|.+.+.||+|+||.||+|+.. +++.||+|++..... .....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 467999999999999999999876 578999999876532 334567789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++.... .+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+++..
T Consensus 120 ~e~~~~~~L~~~~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~ 191 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-----ALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV 191 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EecCCCCCHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeeccCceec
Confidence 99999999999886542 58899999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
..... ......||+.|+|||++.+.
T Consensus 192 ~~~~~--~~~~~~gt~~y~aPE~~~~~ 216 (335)
T 2owb_A 192 EYDGE--RKKVLCGTPNYIAPEVLSKK 216 (335)
T ss_dssp CSTTC--CBCCCCSCCSSCCHHHHHTS
T ss_pred ccCcc--cccccCCCccccCHHHhccC
Confidence 54322 22345799999999998654
No 195
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=3.2e-27 Score=253.95 Aligned_cols=181 Identities=28% Similarity=0.376 Sum_probs=143.5
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh---hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE---KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
...++|++.+.||+|+||.||+|+.. +++.||+|++....... ...+.+.+|++++++++||||+++++++.+.+.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34578999999999999999999875 68999999987543221 112467899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecc
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGL 742 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~ 742 (779)
.++||||+++ +|.+++.... ..+++..+..++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||+
T Consensus 87 ~~lv~e~~~~-~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 158 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKDNS----LVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGL 158 (346)
T ss_dssp CEEEEECCSE-EHHHHHTTCC----SSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGG
T ss_pred eEEEEEcCCC-CHHHHHHhcC----cCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEEEEeccc
Confidence 9999999986 8888875432 257888999999999999999997 8999999999999999999999999999
Q ss_pred ceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 743 VRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 743 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
++....... ......||+.|+|||++.+...++
T Consensus 159 a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~ 191 (346)
T 1ua2_A 159 AKSFGSPNR--AYTHQVVTRWYRAPELLFGARMYG 191 (346)
T ss_dssp GSTTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCC
T ss_pred ceeccCCcc--cCCcccccccccCchHhhCCCCCC
Confidence 987644322 223457899999999997655443
No 196
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.94 E-value=2.2e-27 Score=254.14 Aligned_cols=171 Identities=25% Similarity=0.410 Sum_probs=144.0
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 664 (779)
.+.++|++.+.||+|+||.||+|+.. +++.||+|++..... ...+|++++.++ +||||+++++++.+.+..|
T Consensus 19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~ 92 (342)
T 2qr7_A 19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVY 92 (342)
T ss_dssp CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEE
T ss_pred CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEE
Confidence 35678999999999999999999875 688999999975432 234688888888 7999999999999999999
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC----CcEEEEee
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD----MRAKVADF 740 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~----~~~kl~DF 740 (779)
+||||+++|+|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+||++.++ +.+||+||
T Consensus 93 lv~E~~~gg~L~~~i~~~~-----~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~Df 164 (342)
T 2qr7_A 93 VVTELMKGGELLDKILRQK-----FFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDF 164 (342)
T ss_dssp EEECCCCSCBHHHHHHTCT-----TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEECCC
T ss_pred EEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEEEEC
Confidence 9999999999999886432 58999999999999999999997 899999999999998533 35999999
Q ss_pred ccceecCCCCCcccccccccCCccccccccccc
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+++....... .....+||+.|+|||++.+.
T Consensus 165 g~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~ 195 (342)
T 2qr7_A 165 GFAKQLRAENG--LLMTPCYTANFVAPEVLERQ 195 (342)
T ss_dssp TTCEECBCTTC--CBCCSSCCSSCCCHHHHHHH
T ss_pred CCcccCcCCCC--ceeccCCCccccCHHHhcCC
Confidence 99987654322 22345799999999998653
No 197
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.94 E-value=5.3e-27 Score=244.20 Aligned_cols=174 Identities=32% Similarity=0.534 Sum_probs=146.2
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh-hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE-KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++....... .....+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 468999999999999999999765 57799999986543222 2346789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++.... .+++..+..++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||++...
T Consensus 88 ~e~~~~~~l~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~ 159 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS-----KFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHA 159 (279)
T ss_dssp ECCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCGGGEEECTTSCEEECSCCEESCC
T ss_pred EecCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHhEEEcCCCCEEEEeccccccC
Confidence 99999999999986543 48899999999999999999995 89999999999999999999999999998654
Q ss_pred CCCCCcccccccccCCcccccccccccC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
... ......||+.|+|||++.+..
T Consensus 160 ~~~----~~~~~~~~~~y~aPE~~~~~~ 183 (279)
T 3fdn_A 160 PSS----RRTDLCGTLDYLPPEMIEGRM 183 (279)
T ss_dssp ------------CCCCTTCCHHHHTTCC
T ss_pred Ccc----cccccCCCCCccCHhHhccCC
Confidence 332 123457999999999987643
No 198
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.94 E-value=1.8e-27 Score=248.09 Aligned_cols=175 Identities=25% Similarity=0.396 Sum_probs=136.0
Q ss_pred hcCCcccceecccccEEEEEEEEcC----CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHD----GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 664 (779)
.++|++.+.||+|+||.||+|+... +..||+|++.... .....+.+.+|+.++++++||||+++++++. .+..+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 91 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT-SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 91 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence 4689999999999999999997642 4579999987543 3445678999999999999999999999974 56789
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++++|.+++.... ..+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++
T Consensus 92 lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 164 (281)
T 1mp8_A 92 IIMELCTLGELRSFLQVRK----YSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSR 164 (281)
T ss_dssp EEEECCTTEEHHHHHHHTT----TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred EEEecCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEECcccccc
Confidence 9999999999999986543 258899999999999999999996 899999999999999999999999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
....... .......+|+.|+|||++.+.
T Consensus 165 ~~~~~~~-~~~~~~~~~~~y~aPE~~~~~ 192 (281)
T 1mp8_A 165 YMEDSTY-YKASKGKLPIKWMAPESINFR 192 (281)
T ss_dssp ---------------CCGGGCCHHHHHHC
T ss_pred ccCcccc-cccccCCCcccccChhhcccC
Confidence 7654321 122334578899999998654
No 199
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.94 E-value=3e-27 Score=251.54 Aligned_cols=183 Identities=27% Similarity=0.473 Sum_probs=152.3
Q ss_pred HhhcCCcccceecccccEEEEEEEEc------CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG 660 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 660 (779)
...++|++.+.||+|+||.||+|... +++.||+|++.... ......++.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 100 (322)
T 1p4o_A 22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA-SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 100 (322)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS-CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS
T ss_pred chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc-CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccC
Confidence 34578999999999999999999754 36789999987543 344556789999999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhHhhhccc-----CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcE
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKE-----EGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRA 735 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~ 735 (779)
+..++||||+++++|.+++..... .....+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+
T Consensus 101 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NIli~~~~~~ 177 (322)
T 1p4o_A 101 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTV 177 (322)
T ss_dssp SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCCE
T ss_pred CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccCCCccceEEEcCCCeE
Confidence 999999999999999999876432 112356899999999999999999997 799999999999999999999
Q ss_pred EEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 736 KVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 736 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
||+|||+++...............||+.|+|||++.+.
T Consensus 178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 215 (322)
T 1p4o_A 178 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG 215 (322)
T ss_dssp EECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHC
T ss_pred EECcCccccccccccccccccCCCCCCCccChhhhccC
Confidence 99999999866443222223344678999999998654
No 200
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.94 E-value=1.4e-26 Score=242.37 Aligned_cols=171 Identities=27% Similarity=0.400 Sum_probs=147.1
Q ss_pred CCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe----CCeEEE
Q 004020 591 NFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD----GNERLL 665 (779)
Q Consensus 591 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~l 665 (779)
.|.+.+.||+|+||.||+|... ++..||+|++..........+.+.+|+.++++++||||+++++++.. ....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 4778889999999999999765 68899999998776666777889999999999999999999999875 345799
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC--cEEcCCCCCCEEEc-CCCcEEEEeecc
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQS--FIHRDLKPSNILLG-DDMRAKVADFGL 742 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~--ivHrDlkp~NIll~-~~~~~kl~DFG~ 742 (779)
||||+++++|.+++.... .+++..++.++.||+.||+|||+ .+ |+||||||+||+++ +++.+||+|||+
T Consensus 107 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~ 178 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGL 178 (290)
T ss_dssp EEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred EEEecCCCCHHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHHHc---CCCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence 999999999999996542 57899999999999999999996 66 99999999999997 789999999999
Q ss_pred ceecCCCCCcccccccccCCccccccccccc
Q 004020 743 VRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+...... ......||+.|+|||++.+.
T Consensus 179 ~~~~~~~----~~~~~~~t~~y~aPE~~~~~ 205 (290)
T 1t4h_A 179 ATLKRAS----FAKAVIGTPEFMAPEMYEEK 205 (290)
T ss_dssp GGGCCTT----SBEESCSSCCCCCGGGGGTC
T ss_pred ccccccc----ccccccCCcCcCCHHHHhcc
Confidence 9754332 22345699999999998754
No 201
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=7.7e-28 Score=270.21 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=121.4
Q ss_pred CCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEec
Q 004020 90 SLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSA 168 (779)
Q Consensus 90 ~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l 168 (779)
+|++|+|++|.|++.+| .|.++++|++|+|++|.++++++ |..+++|++|+|++|.|.+ +| ..++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE--LL----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE--EE----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC--CC----CCCCcCEEEC
Confidence 67778888877777665 67777778888888777776665 7777778888888777754 22 2377788888
Q ss_pred cCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCc
Q 004020 169 NGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNS 248 (779)
Q Consensus 169 ~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 248 (779)
++|.+++..+.. +++|++|+|++|.|++..|..++ .+++|+.|+|++|.
T Consensus 107 ~~N~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~--------------------------~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 107 ANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEG--------------------------CRSRVQYLDLKLNE 155 (487)
T ss_dssp CSSCCCCEEECC-----CSSCEEEECCSSCCCSGGGBCGG--------------------------GGSSEEEEECTTSC
T ss_pred cCCcCCCCCccc-----cCCCCEEECCCCCCCCCCchhhc--------------------------CCCCCCEEECCCCC
Confidence 888877665542 46788888888888876666554 46778888888888
Q ss_pred ccCCCCC-CC-CCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCC
Q 004020 249 FTGPLPD-LS-GLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 249 l~~~~~~-~~-~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
+++.+|. +. .+++|+.|+|++|.|++..+ +..+++|+.|+|++|+|++.+|
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH
Confidence 8776653 44 57788888888888876522 3347777777777777765433
No 202
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.94 E-value=1.4e-27 Score=254.34 Aligned_cols=175 Identities=29% Similarity=0.513 Sum_probs=141.9
Q ss_pred cCCcccceecccccEEEEEEEEc-CCc----EEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGT----KIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 664 (779)
++|++.+.||+|+||.||+|++. +++ +||+|.+.... .....+.+.+|+.++++++||||+++++++. .+..+
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 90 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS-GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ 90 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT-SCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc-cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence 57999999999999999999864 444 37788775432 1223356778999999999999999999886 45689
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++|+|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++
T Consensus 91 ~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~ 163 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQHR----GALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVAD 163 (325)
T ss_dssp EEEECCTTCBSHHHHHSSG----GGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECSCSGGG
T ss_pred EEEEeCCCCCHHHHHHHcc----ccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECCCCccc
Confidence 9999999999999986543 257888999999999999999997 799999999999999999999999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...............||+.|+|||++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 192 (325)
T 3kex_A 164 LLPPDDKQLLYSEAKTPIKWMALESIHFG 192 (325)
T ss_dssp GSCCCTTCCC-----CCTTTSCHHHHHHC
T ss_pred ccCcccccccccCCCCcccccChHHhccC
Confidence 77654433334556788899999998654
No 203
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.94 E-value=6.5e-27 Score=246.46 Aligned_cols=180 Identities=27% Similarity=0.426 Sum_probs=144.9
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe-------
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD------- 659 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------- 659 (779)
..++|++.+.||+|+||.||+|+.. +++.||+|++... ....+.+.+|++++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT---EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP 80 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc---HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence 4568999999999999999999875 7899999998643 3455788999999999999999999998865
Q ss_pred ------CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC
Q 004020 660 ------GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM 733 (779)
Q Consensus 660 ------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~ 733 (779)
.+..++||||+++++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++
T Consensus 81 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~ 153 (303)
T 1zy4_A 81 MTAVKKKSTLFIQMEYCENGTLYDLIHSEN----LNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESR 153 (303)
T ss_dssp -----CEEEEEEEEECCCSCBHHHHHHHSC----GGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTS
T ss_pred hcccccCCceEEEEecCCCCCHHHhhhccc----cccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCC
Confidence 346789999999999999996533 257788999999999999999997 7999999999999999999
Q ss_pred cEEEEeeccceecCCCCC------------cccccccccCCcccccccccccCCCC
Q 004020 734 RAKVADFGLVRLAPDNGK------------HSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 734 ~~kl~DFG~a~~~~~~~~------------~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
.+||+|||+++....... ........||+.|+|||++.+...++
T Consensus 154 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~ 209 (303)
T 1zy4_A 154 NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYN 209 (303)
T ss_dssp CEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCC
T ss_pred CEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCc
Confidence 999999999876543210 11123456899999999998654443
No 204
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.94 E-value=2.4e-27 Score=264.32 Aligned_cols=175 Identities=27% Similarity=0.452 Sum_probs=148.1
Q ss_pred hhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
..++|++.+.||+|+||.||+|+..++..||||+++... ...+++.+|++++++++||||+++++++. .+..++||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~ 261 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS---MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIIT 261 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS---BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC---ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEE
Confidence 456789999999999999999999889999999997643 23568999999999999999999999986 56789999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++|+|.+++..... ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 262 e~~~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~ 335 (454)
T 1qcf_A 262 EFMAKGSLLDFLKSDEG---SKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIE 335 (454)
T ss_dssp CCCTTCBHHHHHHSHHH---HTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEECSTTGGGGBC
T ss_pred eecCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEeeCCCceEcC
Confidence 99999999999965432 147888999999999999999997 899999999999999999999999999998764
Q ss_pred CCCCcccccccccCCccccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.. .........+++.|+|||++.+.
T Consensus 336 ~~-~~~~~~~~~~~~~y~aPE~~~~~ 360 (454)
T 1qcf_A 336 DN-EYTAREGAKFPIKWTAPEAINFG 360 (454)
T ss_dssp CH-HHHTTCSSSSCGGGSCHHHHHHC
T ss_pred CC-ceeccCCCcccccccCHHHhccC
Confidence 32 11112334567899999998643
No 205
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.94 E-value=4e-27 Score=251.03 Aligned_cols=183 Identities=28% Similarity=0.369 Sum_probs=152.2
Q ss_pred HHHHHHhhcCCccc-ceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEE
Q 004020 582 IQVLRNVTNNFSEE-NVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCL 658 (779)
Q Consensus 582 ~~~~~~~~~~~~~~-~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~ 658 (779)
++....+.++|.+. +.||+|+||.||+|+.. +++.||+|++...........++.+|+.+++.+. ||||+++++++.
T Consensus 20 ~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~ 99 (327)
T 3lm5_A 20 FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYE 99 (327)
T ss_dssp SBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred HHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEE
Confidence 44456677788887 89999999999999876 6899999999876544555678999999999995 699999999999
Q ss_pred eCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC---CCcE
Q 004020 659 DGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD---DMRA 735 (779)
Q Consensus 659 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~---~~~~ 735 (779)
..+..++||||+++|+|.+++.... ...+++..++.++.||+.||+|||+ .+|+||||||+||+++. ++.+
T Consensus 100 ~~~~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~~~~~ 173 (327)
T 3lm5_A 100 NTSEIILILEYAAGGEIFSLCLPEL---AEMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLGDI 173 (327)
T ss_dssp CSSEEEEEEECCTTEEGGGGGSSCC----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTTBCCE
T ss_pred eCCeEEEEEEecCCCcHHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCCCCcE
Confidence 9999999999999999999885432 2358999999999999999999996 89999999999999987 7899
Q ss_pred EEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 736 KVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 736 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
||+|||+++....... .....||+.|+|||++.+.
T Consensus 174 kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~ 208 (327)
T 3lm5_A 174 KIVDFGMSRKIGHACE---LREIMGTPEYLAPEILNYD 208 (327)
T ss_dssp EECCGGGCEEC------------CCCGGGCCHHHHTTC
T ss_pred EEeeCccccccCCccc---cccccCCcCccCCeeecCC
Confidence 9999999987654321 2345799999999998754
No 206
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.94 E-value=3.8e-27 Score=255.12 Aligned_cols=187 Identities=25% Similarity=0.373 Sum_probs=148.3
Q ss_pred eeHHHHHHhhcCCcccceecccccEEEEEEEEcCCcEEEEEEeccccc---------ChhHHHHHHHHHHHHHcCCCCcc
Q 004020 580 ISIQVLRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVV---------SEKGFAEFKSEIAVLTKVRHRHL 650 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~~E~~~l~~l~h~ni 650 (779)
...+++..+.++|++.+.||+|+||.||+|...+++.||||++..... .....+.+.+|++++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 346778889999999999999999999999988899999999865432 12234789999999999999999
Q ss_pred ceEeeEEEeC-----CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCC
Q 004020 651 VGLLGYCLDG-----NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPS 725 (779)
Q Consensus 651 v~~~~~~~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~ 725 (779)
+++++++... ...++||||++ |+|.+++.... ..+++..+..++.||+.||+|||+ .+|+||||||+
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~ 163 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR----IVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPG 163 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChH
Confidence 9999998643 35799999997 68888875432 358999999999999999999997 79999999999
Q ss_pred CEEEcCCCcEEEEeeccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 726 NILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 726 NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
||+++.++.+||+|||+++...... ......||+.|+|||++.+...++
T Consensus 164 NIl~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~ 212 (362)
T 3pg1_A 164 NILLADNNDITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFT 212 (362)
T ss_dssp GEEECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCC
T ss_pred HEEEcCCCCEEEEecCccccccccc---ccceecccceecCcHHhcCCCCCC
Confidence 9999999999999999997554322 223457899999999988755444
No 207
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=1.1e-26 Score=248.77 Aligned_cols=181 Identities=27% Similarity=0.421 Sum_probs=144.8
Q ss_pred HHHHHHhhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcC--CCCccceEeeEEEe
Q 004020 582 IQVLRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV--RHRHLVGLLGYCLD 659 (779)
Q Consensus 582 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~ 659 (779)
......+.++|++.+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++... +||||+++++++..
T Consensus 29 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~ 102 (337)
T 3mdy_A 29 LLVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT-----EEASWFRETEIYQTVLMRHENILGFIAADIK 102 (337)
T ss_dssp HHHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred cccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc-----ccchhhhHHHHHHHHhhcCCCeeeEEEEEcc
Confidence 3444566789999999999999999999876 899999998543 223445566666555 89999999999988
Q ss_pred C----CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-----CCCcEEcCCCCCCEEEc
Q 004020 660 G----NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLA-----HQSFIHRDLKPSNILLG 730 (779)
Q Consensus 660 ~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~-----~~~ivHrDlkp~NIll~ 730 (779)
. ...++||||+++|+|.+++... .+++..++.++.|++.||+|||+.+ +.+|+||||||+||+++
T Consensus 103 ~~~~~~~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~ 176 (337)
T 3mdy_A 103 GTGSWTQLYLITDYHENGSLYDYLKST------TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVK 176 (337)
T ss_dssp SCGGGCEEEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEEC
T ss_pred CCCCCCceEEEEeccCCCcHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEEC
Confidence 7 6789999999999999999543 4889999999999999999999610 12999999999999999
Q ss_pred CCCcEEEEeeccceecCCCCCcc--cccccccCCcccccccccccC
Q 004020 731 DDMRAKVADFGLVRLAPDNGKHS--IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 731 ~~~~~kl~DFG~a~~~~~~~~~~--~~~~~~gt~~y~APE~l~~~~ 774 (779)
.++.+||+|||+++......... ......||+.|+|||++.+..
T Consensus 177 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 222 (337)
T 3mdy_A 177 KNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESL 222 (337)
T ss_dssp TTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCC
T ss_pred CCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhccccc
Confidence 99999999999998765432211 112457999999999987654
No 208
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.94 E-value=3.6e-27 Score=265.46 Aligned_cols=175 Identities=30% Similarity=0.487 Sum_probs=149.8
Q ss_pred hcCCcccceecccccEEEEEEEEcC-CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHD-GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|++.. +..||||+++... ...+++.+|++++++++||||+++++++...+..++||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~ 295 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 295 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc---cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEE
Confidence 4578899999999999999998874 8899999997543 23567999999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++|+|.+++..... ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 296 E~~~~g~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 369 (495)
T 1opk_A 296 EFMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMT 369 (495)
T ss_dssp ECCTTCBHHHHHHHSCT---TTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCEECCT
T ss_pred EccCCCCHHHHHHhcCc---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeecccceecc
Confidence 99999999999965432 358899999999999999999996 899999999999999999999999999998765
Q ss_pred CCCCcccccccccCCccccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
... ........+++.|+|||++.+.
T Consensus 370 ~~~-~~~~~~~~~~~~y~aPE~~~~~ 394 (495)
T 1opk_A 370 GDT-YTAHAGAKFPIKWTAPESLAYN 394 (495)
T ss_dssp TCC-EECCTTCCCCGGGCCHHHHHHC
T ss_pred CCc-eeecCCCcCCcceeCHhHHhcC
Confidence 432 2222334567899999998643
No 209
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.94 E-value=3.2e-27 Score=250.53 Aligned_cols=190 Identities=26% Similarity=0.403 Sum_probs=155.5
Q ss_pred eeHHHHHHhhcCCcccceecccccEEEEEEEE------cCCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccce
Q 004020 580 ISIQVLRNVTNNFSEENVLGRGGFGTVYKGEL------HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVG 652 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~ 652 (779)
+.........++|++.+.||+|+||.||+|+. .+++.||+|++.... .....+.+.+|+++++++ +||||++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~ 95 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVN 95 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC-CcHHHHHHHHHHHHHHhcccCCCeee
Confidence 34445555678999999999999999999974 246889999997653 344556799999999999 6999999
Q ss_pred EeeEEEeCC-eEEEEEEecCCCChhhHhhhcccCC-----------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEc
Q 004020 653 LLGYCLDGN-ERLLVYEYMPQGTLSRHLFNRKEEG-----------LKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHR 720 (779)
Q Consensus 653 ~~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~-----------~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHr 720 (779)
+++++...+ ..++||||+++++|.+++....... ...+++..++.++.||+.||+|||+ .+|+||
T Consensus 96 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~ 172 (316)
T 2xir_A 96 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHR 172 (316)
T ss_dssp EEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH---TTCCCS
T ss_pred EEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh---CCcccc
Confidence 999988765 4899999999999999997654210 1237889999999999999999997 899999
Q ss_pred CCCCCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 721 DLKPSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 721 Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
||||+||+++.++.+||+|||+++...............||+.|+|||++.+.
T Consensus 173 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 225 (316)
T 2xir_A 173 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR 225 (316)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHC
T ss_pred cCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccc
Confidence 99999999999999999999999876554333333445689999999988654
No 210
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=99.94 E-value=3.1e-27 Score=255.51 Aligned_cols=175 Identities=28% Similarity=0.427 Sum_probs=133.6
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC------
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG------ 660 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~------ 660 (779)
+.++|++.+.||+|+||.||+|... +++.||||++..........+++.+|+++++.++||||+++++++...
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 4578999999999999999999764 689999999976655556667889999999999999999999999754
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEee
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADF 740 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DF 740 (779)
...++||||+ +++|.+++.. ..+++..+..++.||++||+|||+ .+|+||||||+||+++.++.+||+||
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL~DF 176 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKC------QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDF 176 (367)
T ss_dssp CCCEEEEECC-CEECC-----------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC-
T ss_pred CeEEEEeccc-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEEeec
Confidence 5679999999 6899888743 258899999999999999999997 89999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
|+++..... ....+||+.|+|||++.+...++
T Consensus 177 G~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~ 208 (367)
T 2fst_X 177 GLARHTADE-----MTGYVATRWYRAPEIMLNWMHYN 208 (367)
T ss_dssp -------------------CCCTTCCHHHHTTCCSCC
T ss_pred ccccccccc-----CCCcCcCcCccChHHHcCCcCCC
Confidence 999875432 23457999999999998755444
No 211
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.94 E-value=5.5e-27 Score=246.68 Aligned_cols=178 Identities=26% Similarity=0.399 Sum_probs=147.4
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
++|++.+.||+|+||.||+|+.. +++.||+|++..........+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57999999999999999999876 68999999987654333344678899999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
|++ ++|.+++..... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++....
T Consensus 83 ~~~-~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~ 155 (299)
T 2r3i_A 83 FLH-QDLKKFMDASAL---TGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155 (299)
T ss_dssp CCS-EEHHHHHHHTTT---TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCC
T ss_pred ccc-CCHHHHHHhhhc---cCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHeEEcCCCCEEECcchhhhhccC
Confidence 997 699998865432 247889999999999999999997 8999999999999999999999999999987643
Q ss_pred CCCcccccccccCCcccccccccccCCC
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAETSGM 776 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~~~~ 776 (779)
... ......||+.|+|||++.+...+
T Consensus 156 ~~~--~~~~~~~~~~y~aPE~~~~~~~~ 181 (299)
T 2r3i_A 156 PVR--TYTHEVVTLWYRAPEILLGAKYY 181 (299)
T ss_dssp CSB--CTTSCBCCCTTCCHHHHTTCSSC
T ss_pred Ccc--ccCcccccccccCcHHhhccccC
Confidence 321 22345689999999998775543
No 212
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.94 E-value=3.8e-27 Score=243.55 Aligned_cols=173 Identities=31% Similarity=0.477 Sum_probs=148.9
Q ss_pred cCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEEe
Q 004020 590 NNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYEY 669 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 669 (779)
++|++.+.||+|+||.||+|+..+++.||+|++..... ..+++.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF 84 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB---CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence 57899999999999999999998889999999976543 235789999999999999999999999999999999999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCCC
Q 004020 670 MPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDN 749 (779)
Q Consensus 670 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 749 (779)
+++++|.+++.... ..+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 ~~~~~L~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 157 (267)
T 3t9t_A 85 MEHGCLSDYLRTQR----GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD 157 (267)
T ss_dssp CTTCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred CCCCcHHHHHhhCc----ccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEcccccccccccc
Confidence 99999999986543 257899999999999999999996 89999999999999999999999999998765432
Q ss_pred CCcccccccccCCccccccccccc
Q 004020 750 GKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 750 ~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.........|++.|+|||++.+.
T Consensus 158 -~~~~~~~~~~~~~y~aPE~~~~~ 180 (267)
T 3t9t_A 158 -QYTSSTGTKFPVKWASPEVFSFS 180 (267)
T ss_dssp -HHHSTTSTTCCGGGCCHHHHHHC
T ss_pred -cccccccccccccccChhhhcCC
Confidence 11122334578899999998654
No 213
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.3e-27 Score=251.70 Aligned_cols=267 Identities=18% Similarity=0.215 Sum_probs=228.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
.+++.++++.+++...+...+..+++|++|+|++|++++.++ .|.++++|++|+|++|+++++++ |..+++|++|+|
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 467778888888886666667778899999999999999887 79999999999999999998876 899999999999
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCC
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGD 223 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~ 223 (779)
++|++.+ + ..+++|+.|++++|++++..+.. +++|++|+|++|++++..|..++
T Consensus 88 s~n~l~~--l----~~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~N~l~~~~~~~~~--------------- 141 (317)
T 3o53_A 88 NNNYVQE--L----LVGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEG--------------- 141 (317)
T ss_dssp CSSEEEE--E----EECTTCCEEECCSSCCSEEEECC-----CSSCEEEECCSSCCCSGGGBCTG---------------
T ss_pred cCCcccc--c----cCCCCcCEEECCCCccCCcCccc-----cCCCCEEECCCCCCCCccchhhh---------------
Confidence 9999965 2 24589999999999999776553 57899999999999976665554
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCC-C-CCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCC
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-L-SGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
.+++|++|+|++|.+++..+. + ..+++|++|++++|+|++. |. ...+++|++|+|++|++++.++
T Consensus 142 -----------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 142 -----------CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp -----------GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG
T ss_pred -----------ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh
Confidence 589999999999999997764 5 4789999999999999965 33 3459999999999999987655
Q ss_pred CCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcc
Q 004020 302 KFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLG 381 (779)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 381 (779)
.+ . ..++|+.|+|++|+
T Consensus 209 ~~-~--------------------------------------------------------------~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 209 EF-Q--------------------------------------------------------------SAAGVTWISLRNNK 225 (317)
T ss_dssp GG-G--------------------------------------------------------------GGTTCSEEECTTSC
T ss_pred hh-c--------------------------------------------------------------ccCcccEEECcCCc
Confidence 31 0 12379999999999
Q ss_pred ccccccccccccccCCeEeccCcccc-ccCCccCCCCCCCCceecc-CCcccccCCC
Q 004020 382 LSGTISSNFSRLTSLRQLMLSGNELT-GTIPKELTTLPSLEMLDVS-NNHLFGKVPN 436 (779)
Q Consensus 382 l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~iP~~l~~l~~L~~L~Ls-~N~l~g~iP~ 436 (779)
++ .+|..+..+++|+.|+|++|.++ +.+|..+..++.|+.|+++ .+.++|..|.
T Consensus 226 l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99 57888999999999999999999 8899999999999999999 5667777664
No 214
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1.1e-26 Score=245.57 Aligned_cols=177 Identities=24% Similarity=0.351 Sum_probs=143.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
..++|++.+.||+|+||.||+|+.. +++.||+|++...... ....+.+.+|+.++++++||||+++++++...+..++
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 3578999999999999999999875 6889999999765432 3345779999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++++|.+++.... .+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++.
T Consensus 112 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~ 183 (309)
T 2h34_A 112 DMRLINGVDLAAMLRRQG-----PLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVDFGIASA 183 (309)
T ss_dssp EEECCCCEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSCCC---
T ss_pred EEEecCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEecCccCcc
Confidence 999999999999986542 58899999999999999999996 8999999999999999999999999999876
Q ss_pred cCCCCCcccccccccCCccccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...... .......||+.|+|||++.+.
T Consensus 184 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~ 210 (309)
T 2h34_A 184 TTDEKL-TQLGNTVGTLYYMAPERFSES 210 (309)
T ss_dssp --------------CCGGGCCGGGTCC-
T ss_pred cccccc-ccccccCCCcCccCHHHHcCC
Confidence 644321 122345699999999998754
No 215
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.94 E-value=1.1e-26 Score=242.20 Aligned_cols=174 Identities=26% Similarity=0.419 Sum_probs=147.2
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh----hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE----KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++....... ...+.+.+|++++++++||||+++++++.+.+..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 467999999999999999999876 68999999987654222 1357799999999999999999999999999999
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC----cEEEEe
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM----RAKVAD 739 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~----~~kl~D 739 (779)
++||||+++++|.+++.... .+++..++.++.||+.||+|||+ .+|+||||||+||+++.++ .+||+|
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~kl~d 155 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE-----SLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLID 155 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCCEEECC
T ss_pred EEEEeecCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCceEEEe
Confidence 99999999999999986532 58899999999999999999996 8999999999999998877 899999
Q ss_pred eccceecCCCCCcccccccccCCccccccccccc
Q 004020 740 FGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 740 FG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
||+++....... .....||+.|+|||++.+.
T Consensus 156 fg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~ 186 (283)
T 3bhy_A 156 FGIAHKIEAGNE---FKNIFGTPEFVAPEIVNYE 186 (283)
T ss_dssp CTTCEECC-----------CCCGGGCCHHHHTTC
T ss_pred cccceeccCCCc---ccccCCCcCccCcceecCC
Confidence 999987654321 2345689999999998654
No 216
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.7e-27 Score=256.68 Aligned_cols=175 Identities=26% Similarity=0.405 Sum_probs=148.4
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC--eEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN--ERLL 665 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~l 665 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..... ....+.+.+|++++++++||||+++++++...+ ..++
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~l 86 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL 86 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEE
Confidence 457999999999999999999876 589999999975432 233567789999999999999999999998765 6799
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE----cCCCcEEEEeec
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL----GDDMRAKVADFG 741 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll----~~~~~~kl~DFG 741 (779)
||||+++|+|.+++...... ..+++..++.++.||+.||+|||+ .+|+||||||+||++ +.++.+||+|||
T Consensus 87 v~e~~~~g~L~~~l~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG 161 (396)
T 4eut_A 87 IMEFCPCGSLYTVLEEPSNA--YGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFG 161 (396)
T ss_dssp EECCCTTEEHHHHTTSGGGT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEEECCGG
T ss_pred EEecCCCCCHHHHHHhhhcc--cCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEEEecCC
Confidence 99999999999998664432 238999999999999999999997 899999999999999 778889999999
Q ss_pred cceecCCCCCcccccccccCCcccccccccc
Q 004020 742 LVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 742 ~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
+++...... ......||+.|+|||++.+
T Consensus 162 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~ 189 (396)
T 4eut_A 162 AARELEDDE---QFVSLYGTEEYLHPDMYER 189 (396)
T ss_dssp GCEECCCGG---GSSCSSSCCTTCCHHHHHH
T ss_pred CceEccCCC---ccccccCCccccCHHHhhc
Confidence 998765432 2234579999999999864
No 217
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.94 E-value=1e-26 Score=247.96 Aligned_cols=175 Identities=28% Similarity=0.475 Sum_probs=148.8
Q ss_pred cCCcccceecccccEEEEEEEE-----cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe--CCe
Q 004020 590 NNFSEENVLGRGGFGTVYKGEL-----HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD--GNE 662 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~--~~~ 662 (779)
++|++.+.||+|+||.||+|++ .+++.||+|++.... ....+.+.+|++++++++||||+++++++.. ...
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 100 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG--PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS 100 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC--HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence 5799999999999999999984 368899999987543 4455779999999999999999999999874 456
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecc
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGL 742 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~ 742 (779)
.++||||+++++|.+++..... .+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 173 (327)
T 3lxl_A 101 LRLVMEYLPSGCLRDFLQRHRA----RLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGL 173 (327)
T ss_dssp EEEEEECCTTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCGGG
T ss_pred EEEEEeecCCCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEccccc
Confidence 8999999999999999966432 48999999999999999999996 8999999999999999999999999999
Q ss_pred ceecCCCCCcc-cccccccCCccccccccccc
Q 004020 743 VRLAPDNGKHS-IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~ 773 (779)
++......... ......||+.|+|||++.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 205 (327)
T 3lxl_A 174 AKLLPLDKDYYVVREPGQSPIFWYAPESLSDN 205 (327)
T ss_dssp CEECCTTCSEEECSSCCCSCGGGSCHHHHHHC
T ss_pred ceecccCCccceeeccCCccccccCHHHhccC
Confidence 98775443221 22345688899999988654
No 218
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.94 E-value=1.1e-26 Score=254.16 Aligned_cols=169 Identities=23% Similarity=0.349 Sum_probs=134.3
Q ss_pred hcCCccc-ceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHc-CCCCccceEeeEEEe----CC
Q 004020 589 TNNFSEE-NVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTK-VRHRHLVGLLGYCLD----GN 661 (779)
Q Consensus 589 ~~~~~~~-~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~----~~ 661 (779)
.++|.+. +.||+|+||.||+|+.. +++.||||++... ..+.+|++++.+ .+||||+++++++.. .+
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence 4567766 78999999999999875 6899999998632 346778888744 579999999999875 55
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC---CCcEEEE
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD---DMRAKVA 738 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~---~~~~kl~ 738 (779)
..|+||||+++|+|.+++..... ..+++..+..|+.||+.||+|||+ .+|+||||||+|||++. ++.+||+
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~ 206 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLT 206 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC------CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEEC
T ss_pred EEEEEEEeCCCCcHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEE
Confidence 68999999999999999965432 358999999999999999999996 89999999999999997 7899999
Q ss_pred eeccceecCCCCCcccccccccCCccccccccccc
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|||+++...... .....+||+.|+|||++.+.
T Consensus 207 DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~ 238 (400)
T 1nxk_A 207 DFGFAKETTSHN---SLTTPCYTPYYVAPEVLGPE 238 (400)
T ss_dssp CCTTCEECC--------------CTTCCGGGSCCC
T ss_pred ecccccccCCCC---ccccCCCCCCccCHhhcCCC
Confidence 999998765322 22345799999999998654
No 219
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.94 E-value=9.3e-27 Score=246.09 Aligned_cols=177 Identities=29% Similarity=0.416 Sum_probs=142.5
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccC---hhHHHHHHHHHHHHHcCC---CCccceEeeEEEeC
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVS---EKGFAEFKSEIAVLTKVR---HRHLVGLLGYCLDG 660 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~ 660 (779)
..++|++.+.||+|+||.||+|+. .+++.||+|++...... ......+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467999999999999999999986 47899999998754321 111245667777777664 99999999999876
Q ss_pred C-----eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcE
Q 004020 661 N-----ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRA 735 (779)
Q Consensus 661 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~ 735 (779)
. ..++||||++ ++|.+++..... ..+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~ 159 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP---PGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGTV 159 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCT---TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTSCE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCE
Confidence 5 4789999997 599999865432 248999999999999999999997 899999999999999999999
Q ss_pred EEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 736 KVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 736 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
||+|||+++...... ......||+.|+|||++.+..
T Consensus 160 kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~ 195 (308)
T 3g33_A 160 KLADFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQST 195 (308)
T ss_dssp EECSCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSC
T ss_pred EEeeCccccccCCCc---ccCCccccccccCchHHcCCC
Confidence 999999998664332 224467999999999986543
No 220
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.94 E-value=5.6e-27 Score=255.70 Aligned_cols=177 Identities=23% Similarity=0.366 Sum_probs=143.5
Q ss_pred HhhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC-----
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG----- 660 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~----- 660 (779)
...++|++.+.||+|+||.||+|+. .+++.||+|++.... ....+|+++++.++||||+++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~------~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~ 77 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP------RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP 77 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc------chHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence 4567899999999999999999976 478999999986542 1234799999999999999999998543
Q ss_pred ---------------------------------CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHH
Q 004020 661 ---------------------------------NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVE 707 (779)
Q Consensus 661 ---------------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~ 707 (779)
...++||||++ ++|.+.+......+ ..+++..+..++.||++||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~-~~l~~~~~~~i~~qi~~aL~ 155 (383)
T 3eb0_A 78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSG-RSIPMNLISIYIYQLFRAVG 155 (383)
T ss_dssp --------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHH
Confidence 34789999998 58888776543322 36899999999999999999
Q ss_pred HHHcCCCCCcEEcCCCCCCEEEc-CCCcEEEEeeccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 708 YLHGLAHQSFIHRDLKPSNILLG-DDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 708 ~LH~~~~~~ivHrDlkp~NIll~-~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
|||+ .+|+||||||+||+++ .++.+||+|||+|+....... .....||+.|+|||++.+...++
T Consensus 156 ~LH~---~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~ 220 (383)
T 3eb0_A 156 FIHS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYT 220 (383)
T ss_dssp HHHT---TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCC
T ss_pred HHHH---CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCC
Confidence 9996 8999999999999998 689999999999987654322 23457899999999998766554
No 221
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.94 E-value=4.2e-27 Score=265.03 Aligned_cols=175 Identities=29% Similarity=0.450 Sum_probs=151.2
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
+.++|++.+.||+|+||.||+|+.. +++.||||++...... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 103 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 103 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 4568999999999999999999876 7899999998654322 3345779999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE---cCCCcEEEEeecc
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL---GDDMRAKVADFGL 742 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll---~~~~~~kl~DFG~ 742 (779)
||||+.+++|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||++ +.++.+||+|||+
T Consensus 104 v~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~ 175 (484)
T 3nyv_A 104 VGEVYTGGELFDEIISRK-----RFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGL 175 (484)
T ss_dssp EECCCCSCBHHHHHHTCS-----CCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCTTH
T ss_pred EEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEeeee
Confidence 999999999999886542 58899999999999999999997 899999999999999 5678999999999
Q ss_pred ceecCCCCCcccccccccCCccccccccccc
Q 004020 743 VRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++....... ....+||+.|+|||++.+.
T Consensus 176 a~~~~~~~~---~~~~~gt~~y~aPE~~~~~ 203 (484)
T 3nyv_A 176 STHFEASKK---MKDKIGTAYYIAPEVLHGT 203 (484)
T ss_dssp HHHBCCCCS---HHHHTTGGGTCCHHHHHTC
T ss_pred eEEcccccc---cccCCCCccccCceeecCC
Confidence 987654322 2345799999999998763
No 222
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.94 E-value=5e-27 Score=244.35 Aligned_cols=179 Identities=25% Similarity=0.417 Sum_probs=150.6
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe--CCeEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD--GNERLL 665 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~--~~~~~l 665 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..........+.+.+|++++++++||||+++++++.. .+..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468999999999999999999875 68999999998766556667889999999999999999999998854 567899
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC-----cEEcCCCCCCEEEcCCCcEEEEee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQS-----FIHRDLKPSNILLGDDMRAKVADF 740 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~-----ivHrDlkp~NIll~~~~~~kl~DF 740 (779)
||||+++++|.+++...... ...+++..++.++.|++.||+|||+ .+ |+||||||+||+++.++.+||+||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~ivH~dl~p~NIl~~~~~~~kl~df 160 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKE-RQYLDEEFVLRVMTQLTLALKECHR---RSDGGHTVLHRDLKPANVFLDGKQNVKLGDF 160 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHH---HC------CCCCCSGGGEEECSSSCEEECCC
T ss_pred EEeCCCCCCHHHHHHhhccc-CCCCCHHHHHHHHHHHHHHHHHHhc---ccCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence 99999999999999765432 2358999999999999999999997 56 999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccCCccccccccccc
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+++...... .......||+.|+|||++.+.
T Consensus 161 g~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~ 191 (279)
T 2w5a_A 161 GLARILNHDT--SFAKTFVGTPYYMSPEQMNRM 191 (279)
T ss_dssp CHHHHC---C--HHHHHHHSCCTTCCHHHHHCC
T ss_pred chheeecccc--ccccccCCCccccChHHhccC
Confidence 9987664321 122335689999999998754
No 223
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.94 E-value=1.1e-26 Score=246.56 Aligned_cols=175 Identities=26% Similarity=0.391 Sum_probs=141.9
Q ss_pred hhcCCccc-ceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEE
Q 004020 588 VTNNFSEE-NVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 588 ~~~~~~~~-~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 664 (779)
+.+.|++. +.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++.++ +||||+++++++.+.+..+
T Consensus 10 ~~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~ 87 (316)
T 2ac3_A 10 FEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQP--GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFY 87 (316)
T ss_dssp TTTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS--SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred cceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCc--chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEE
Confidence 34678874 78999999999999754 78999999987543 23456789999999985 7999999999999999999
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc---EEEEeec
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR---AKVADFG 741 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~---~kl~DFG 741 (779)
+||||+++++|.+++.... .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++. +||+|||
T Consensus 88 lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg 159 (316)
T 2ac3_A 88 LVFEKMRGGSILSHIHKRR-----HFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFD 159 (316)
T ss_dssp EEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCTT
T ss_pred EEEEcCCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEEcc
Confidence 9999999999999986543 57899999999999999999997 79999999999999998766 9999999
Q ss_pred cceecCCCCCc-----ccccccccCCcccccccccc
Q 004020 742 LVRLAPDNGKH-----SIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 742 ~a~~~~~~~~~-----~~~~~~~gt~~y~APE~l~~ 772 (779)
+++........ .......||+.|+|||++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 195 (316)
T 2ac3_A 160 LGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEA 195 (316)
T ss_dssp CCC-------------------CCSGGGCCHHHHHH
T ss_pred CccccccCCccccccccccccccCCcCccChHHhhc
Confidence 98765432211 11123469999999999864
No 224
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.94 E-value=1.1e-26 Score=241.87 Aligned_cols=173 Identities=29% Similarity=0.487 Sum_probs=147.0
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
.++|++.+.||+|+||.||+|+..++..||+|++..... ..+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e 87 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITE 87 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc---cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEe
Confidence 467999999999999999999988888999999875432 3467899999999999999999999886 456899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
|+++++|.+++..... ..+++..++.++.|++.||+|||+ .+|+||||||+||++++++.+||+|||+++....
T Consensus 88 ~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 161 (279)
T 1qpc_A 88 YMENGSLVDFLKTPSG---IKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIED 161 (279)
T ss_dssp CCTTCBHHHHTTSHHH---HTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred cCCCCCHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECCCcccccccC
Confidence 9999999999865432 147899999999999999999996 8999999999999999999999999999987754
Q ss_pred CCCcccccccccCCcccccccccc
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
.. ........+++.|+|||++.+
T Consensus 162 ~~-~~~~~~~~~~~~y~aPE~~~~ 184 (279)
T 1qpc_A 162 NE-YTAREGAKFPIKWTAPEAINY 184 (279)
T ss_dssp SC-EECCTTCCCCTTTSCHHHHHH
T ss_pred cc-cccccCCCCccCccChhhhcc
Confidence 32 222234457889999999864
No 225
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.94 E-value=1.2e-26 Score=241.06 Aligned_cols=175 Identities=30% Similarity=0.464 Sum_probs=143.6
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++...... ....+.+.+|+.+++.++||||+++++++...+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 468999999999999999999876 7899999998754321 22346789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++..
T Consensus 90 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~ 161 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-----RVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMM 161 (276)
T ss_dssp EECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCCCGGGCC
T ss_pred EeccCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeeccccccc
Confidence 99999999999986542 47899999999999999999996 89999999999999999999999999998876
Q ss_pred CCCCCcccccccccCCcccccccccccC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
.... ......||+.|+|||++.+..
T Consensus 162 ~~~~---~~~~~~~~~~y~aPE~~~~~~ 186 (276)
T 2h6d_A 162 SDGE---FLRTSCGSPNYAAPEVISGRL 186 (276)
T ss_dssp CC----------------CCTGGGTTSC
T ss_pred CCCc---ceecccCCccccCHHHHcCCC
Confidence 4432 123346899999999987654
No 226
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.8e-26 Score=245.64 Aligned_cols=217 Identities=19% Similarity=0.266 Sum_probs=148.6
Q ss_pred CCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceE
Q 004020 87 SLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRF 166 (779)
Q Consensus 87 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L 166 (779)
..+++++|+|++|+++..++.+.++++|++|+|++|+++.+|. .+.++++|++|+|++|++.. +|..+.++++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~---- 151 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRA--LPASIASLNR---- 151 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCC--CCGGGGGCTT----
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCcccc--CcHHHhcCcC----
Confidence 3467888888888888655577777788888888877775553 46667777777777777652 4444544444
Q ss_pred eccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeec
Q 004020 167 SANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHG 246 (779)
Q Consensus 167 ~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~ 246 (779)
|++|+|++|++.+.+|..++.. .+ ...+..+++|++|+|++
T Consensus 152 ----------------------L~~L~L~~n~~~~~~p~~~~~~-----~~------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 152 ----------------------LRELSIRACPELTELPEPLAST-----DA------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp ----------------------CCEEEEEEETTCCCCCSCSEEE-----C-------------CCCEEESTTCCEEEEEE
T ss_pred ----------------------CCEEECCCCCCccccChhHhhc-----cc------------hhhhccCCCCCEEECcC
Confidence 4444444444444444443210 00 00123467777777777
Q ss_pred CcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcc
Q 004020 247 NSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVA 326 (779)
Q Consensus 247 N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (779)
|+++..++.+..+++|++|++++|++++ +|..+..+++|++|+|++|++
T Consensus 193 n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~------------------------------ 241 (328)
T 4fcg_A 193 TGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA------------------------------ 241 (328)
T ss_dssp ECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTT------------------------------
T ss_pred CCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcc------------------------------
Confidence 7777333346666666666666666663 455566666666665555554
Q ss_pred cCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccc
Q 004020 327 CDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNEL 406 (779)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l 406 (779)
.+.+|..|+.+++|++|+|++|++
T Consensus 242 --------------------------------------------------------~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 242 --------------------------------------------------------LRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp --------------------------------------------------------CCBCCCCTTCCCCCCEEECTTCTT
T ss_pred --------------------------------------------------------hhhhHHHhcCCCCCCEEECCCCCc
Confidence 445666788899999999999999
Q ss_pred cccCCccCCCCCCCCceeccCCcccccCCC
Q 004020 407 TGTIPKELTTLPSLEMLDVSNNHLFGKVPN 436 (779)
Q Consensus 407 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~ 436 (779)
.+.+|..+..+++|++|+|++|++.|.+|.
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 999999999999999999999999999996
No 227
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.94 E-value=2.2e-26 Score=244.30 Aligned_cols=174 Identities=30% Similarity=0.516 Sum_probs=146.4
Q ss_pred cCC-cccceecccccEEEEEEEEc-----CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC--C
Q 004020 590 NNF-SEENVLGRGGFGTVYKGELH-----DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG--N 661 (779)
Q Consensus 590 ~~~-~~~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~ 661 (779)
++| ++.+.||+|+||.||++.+. +++.||+|++.... .....+.+.+|++++++++||||+++++++.+. .
T Consensus 30 ~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (318)
T 3lxp_A 30 KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA-GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAA 108 (318)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTT
T ss_pred HHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc-ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCc
Confidence 344 88999999999999998653 68899999997653 345567899999999999999999999999874 5
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..++||||+++++|.+++... .+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~------~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg 179 (318)
T 3lxp_A 109 SLQLVMEYVPLGSLRDYLPRH------SIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFG 179 (318)
T ss_dssp EEEEEECCCTTCBHHHHGGGS------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGG
T ss_pred eEEEEEecccCCcHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEECCcc
Confidence 789999999999999998543 37899999999999999999997 899999999999999999999999999
Q ss_pred cceecCCCCCc-ccccccccCCccccccccccc
Q 004020 742 LVRLAPDNGKH-SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 742 ~a~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~ 773 (779)
+++........ .......||+.|+|||++.+.
T Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 212 (318)
T 3lxp_A 180 LAKAVPEGHEYYRVREDGDSPVFWYAPECLKEY 212 (318)
T ss_dssp GCEECCTTCSEEEC---CCCCGGGCCHHHHHHC
T ss_pred ccccccccccccccccCCCCCceeeChHHhcCC
Confidence 99887654322 123345688899999998653
No 228
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.94 E-value=4.3e-27 Score=251.62 Aligned_cols=182 Identities=27% Similarity=0.431 Sum_probs=151.6
Q ss_pred hhcCCcccceecccccEEEEEEEEcC------CcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeC
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHD------GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDG 660 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 660 (779)
..++|++.+.||+|+||.||+|.... ...||+|.+.... .....+.+.+|+++++++ +||||+++++++...
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~ 122 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA-HADEKEALMSELKIMSHLGQHENIVNLLGACTHG 122 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc-ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence 35789999999999999999998642 2479999987543 344567799999999999 899999999999999
Q ss_pred CeEEEEEEecCCCChhhHhhhcccC---------CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEE---------GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD 731 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~---------~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~ 731 (779)
+..++||||+++|+|.+++...... ....+++..++.++.||+.||+|||+ .+|+||||||+||+++.
T Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~ 199 (333)
T 2i1m_A 123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTN 199 (333)
T ss_dssp SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGCEEEG
T ss_pred CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCcccceEEECC
Confidence 9999999999999999998764321 12357899999999999999999997 79999999999999999
Q ss_pred CCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 732 DMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 732 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++.+||+|||+++...............||+.|+|||++.+.
T Consensus 200 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 241 (333)
T 2i1m_A 200 GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDC 241 (333)
T ss_dssp GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHC
T ss_pred CCeEEECccccccccccccceeecCCCCCCccccCHHHhccC
Confidence 999999999999876544333333445678899999988654
No 229
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.94 E-value=1.5e-26 Score=257.50 Aligned_cols=169 Identities=35% Similarity=0.552 Sum_probs=144.1
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC-eEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN-ERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|... ++.||||+++... ..+++.+|++++++++||||+++++++...+ ..++||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~ 266 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 266 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEE
Confidence 467899999999999999999876 7899999997543 3467899999999999999999999987765 789999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++|+|.+++..... ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 267 e~~~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~ 340 (450)
T 1k9a_A 267 EYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 340 (450)
T ss_dssp ECCTTCBHHHHHHHHCT---TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EecCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCccccc
Confidence 99999999999975432 247889999999999999999997 899999999999999999999999999998653
Q ss_pred CCCCcccccccccCCccccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.. .....+++.|+|||++.+.
T Consensus 341 ~~-----~~~~~~~~~y~aPE~~~~~ 361 (450)
T 1k9a_A 341 ST-----QDTGKLPVKWTAPEALREK 361 (450)
T ss_dssp -----------CCCTTTSCHHHHHSS
T ss_pred cc-----ccCCCCCcceeCHHHhcCC
Confidence 32 1223578899999998654
No 230
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.94 E-value=9.3e-27 Score=243.75 Aligned_cols=175 Identities=26% Similarity=0.341 Sum_probs=135.5
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..........+.+.++...++.++||||+++++++.+.+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 468999999999999999999874 7899999999765433344444556666688889999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-CcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQ-SFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~-~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
||++ |+|.+++...... ...+++..++.++.|++.||+|||+ + +|+||||||+||+++.++.+||+|||+++..
T Consensus 86 e~~~-~~l~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp ECCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred ehhc-cchHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 9997 5888877653322 2368999999999999999999996 5 9999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAA 771 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~ 771 (779)
..... .....||+.|+|||++.
T Consensus 161 ~~~~~---~~~~~~t~~y~aPE~~~ 182 (290)
T 3fme_A 161 VDDVA---KDIDAGCKPYMAPERIN 182 (290)
T ss_dssp ------------CCCCCCSCHHHHS
T ss_pred ccccc---ccccCCCccccChhhcC
Confidence 54321 23346999999999973
No 231
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.94 E-value=8.6e-27 Score=243.18 Aligned_cols=172 Identities=33% Similarity=0.579 Sum_probs=147.1
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe------
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD------ 659 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------ 659 (779)
....+|++.+.||+|+||.||+|+.. +++.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (284)
T 2a19_B 8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE 81 (284)
T ss_dssp HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--
T ss_pred hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcc
Confidence 35568999999999999999999876 79999999987543 346789999999999999999998864
Q ss_pred ----------CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE
Q 004020 660 ----------GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL 729 (779)
Q Consensus 660 ----------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll 729 (779)
....++||||+++++|.+++..... ..+++..++.++.||+.||+|||+ .+|+||||||+||++
T Consensus 82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~ 155 (284)
T 2a19_B 82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG---EKLDKVLALELFEQITKGVDYIHS---KKLINRDLKPSNIFL 155 (284)
T ss_dssp -------CCEEEEEEEEECCCCSCBHHHHHHHGGG---SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEE
T ss_pred cccccccccCcceEEEEEeccCCCCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEE
Confidence 3457899999999999999976532 258899999999999999999996 899999999999999
Q ss_pred cCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 730 GDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 730 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++++.+||+|||+++....... .....||+.|+|||++.+.
T Consensus 156 ~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~ 196 (284)
T 2a19_B 156 VDTKQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQ 196 (284)
T ss_dssp EETTEEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCS
T ss_pred cCCCCEEECcchhheecccccc---ccccCCcccccChhhhccC
Confidence 9999999999999987755322 2345699999999998754
No 232
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.94 E-value=1.2e-27 Score=252.20 Aligned_cols=174 Identities=26% Similarity=0.410 Sum_probs=133.2
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHc--CCCCccceEeeEEEeCC----e
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTK--VRHRHLVGLLGYCLDGN----E 662 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~----~ 662 (779)
.++|++.+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++.. ++||||+++++++...+ .
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 75 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 75 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T-----THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc-----chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccce
Confidence 468999999999999999999775 899999998643 33567778888887 78999999999998876 7
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-----CCCcEEcCCCCCCEEEcCCCcEEE
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLA-----HQSFIHRDLKPSNILLGDDMRAKV 737 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~-----~~~ivHrDlkp~NIll~~~~~~kl 737 (779)
.++||||+++|+|.+++... .+++..++.++.|++.||+|||... ..+|+||||||+||+++.++.+||
T Consensus 76 ~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl 149 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI 149 (303)
T ss_dssp EEEEEECCTTCCHHHHHHHC------CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-B
T ss_pred eEEEEeccCCCCHHHHHhcc------CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEE
Confidence 89999999999999999543 3677888999999999999999210 279999999999999999999999
Q ss_pred EeeccceecCCCCCcc--cccccccCCcccccccccccC
Q 004020 738 ADFGLVRLAPDNGKHS--IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 738 ~DFG~a~~~~~~~~~~--~~~~~~gt~~y~APE~l~~~~ 774 (779)
+|||+++......... ......||+.|+|||++.+..
T Consensus 150 ~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 188 (303)
T 3gxj_A 150 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSI 188 (303)
T ss_dssp CCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCS
T ss_pred eecCcceeccCCCcccccccCCCCcCccccCHhhhcCcc
Confidence 9999997665432221 123347999999999987653
No 233
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.94 E-value=7.2e-27 Score=252.75 Aligned_cols=173 Identities=27% Similarity=0.404 Sum_probs=148.8
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... .....+.+.+|++++++++||||+++++++..++..++||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 110 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM 110 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC-CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc-CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEE
Confidence 467999999999999999999876 68999999987653 3455678999999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++++|.+++.... .+++..+..++.|++.||+|||+ +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 111 e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 183 (360)
T 3eqc_A 111 EHMDGGSLDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI 183 (360)
T ss_dssp CCCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH--HHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHH
T ss_pred ECCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH--hCCEEcCCccHHHEEECCCCCEEEEECCCCcccc
Confidence 9999999999986543 47899999999999999999996 2389999999999999999999999999987553
Q ss_pred CCCCcccccccccCCccccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.. ......||+.|+|||++.+.
T Consensus 184 ~~----~~~~~~gt~~y~aPE~~~~~ 205 (360)
T 3eqc_A 184 DS----MANSFVGTRSYMSPERLQGT 205 (360)
T ss_dssp HH----C----CCCCTTCCHHHHTTC
T ss_pred cc----cccCCCCCCCeECHHHHcCC
Confidence 21 12345799999999998764
No 234
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.94 E-value=1.8e-26 Score=240.85 Aligned_cols=173 Identities=28% Similarity=0.504 Sum_probs=149.1
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh-hHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE-KGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++....... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 467999999999999999999876 57889999986543211 2346789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++.... .+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||++...
T Consensus 93 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~ 164 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-----RFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADFGWSVHA 164 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEecccccccC
Confidence 99999999999986542 47899999999999999999996 89999999999999999999999999998765
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.... .....|++.|+|||++.+.
T Consensus 165 ~~~~----~~~~~~~~~y~aPE~~~~~ 187 (284)
T 2vgo_A 165 PSLR----RRTMCGTLDYLPPEMIEGK 187 (284)
T ss_dssp SSSC----BCCCCSCGGGCCHHHHTTC
T ss_pred cccc----cccccCCCCcCCHHHhccC
Confidence 4321 2345699999999998764
No 235
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.94 E-value=1.5e-26 Score=250.53 Aligned_cols=179 Identities=27% Similarity=0.447 Sum_probs=149.0
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC-----C
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG-----N 661 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~ 661 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++.... .....+.+.+|++++++++||||+++++++... .
T Consensus 25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 25 VGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE-HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT-CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred ccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc-CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 3468999999999999999999865 68899999987532 344557789999999999999999999999765 3
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..++||||++ ++|.+++... .+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||
T Consensus 104 ~~~iv~e~~~-~~L~~~l~~~------~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg 173 (364)
T 3qyz_A 104 DVYIVQDLME-TDLYKLLKTQ------HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG 173 (364)
T ss_dssp CEEEEEECCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred eEEEEEcccC-cCHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEEEEeCc
Confidence 6899999997 5898888542 48899999999999999999996 899999999999999999999999999
Q ss_pred cceecCCCCCc-ccccccccCCcccccccccccCCCC
Q 004020 742 LVRLAPDNGKH-SIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 742 ~a~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+++........ .......||+.|+|||++.+...++
T Consensus 174 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ 210 (364)
T 3qyz_A 174 LARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYT 210 (364)
T ss_dssp TCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCS
T ss_pred ceEecCCCCCccccccccccccCCCCCHHhcCCCCCC
Confidence 99876543211 1123457999999999987655444
No 236
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=242.94 Aligned_cols=179 Identities=24% Similarity=0.376 Sum_probs=146.3
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC--hhHHHHHHHHHHHHHcCCCCccceEeeEEE--eCCe
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS--EKGFAEFKSEIAVLTKVRHRHLVGLLGYCL--DGNE 662 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~--~~~~ 662 (779)
..++|++.+.||+|+||.||+|... +++.||+|++...... ....+.+.+|++++++++||||+++++++. +.+.
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK 82 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence 4578999999999999999999874 6889999999764321 234577999999999999999999999985 3457
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecc
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGL 742 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~ 742 (779)
.++||||++++ +.+++..... ..+++..+..++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 83 ~~lv~e~~~~~-l~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~dfg~ 155 (305)
T 2wtk_C 83 MYMVMEYCVCG-MQEMLDSVPE---KRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISALGV 155 (305)
T ss_dssp EEEEEECCSEE-HHHHHHHSTT---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEehhccCC-HHHHHHhCcc---cccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeecccc
Confidence 89999999876 7777654332 358899999999999999999997 8999999999999999999999999999
Q ss_pred ceecCCCCCcccccccccCCccccccccccc
Q 004020 743 VRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 743 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++...............||+.|+|||++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 186 (305)
T 2wtk_C 156 AEALHPFAADDTCRTSQGSPAFQPPEIANGL 186 (305)
T ss_dssp CEECCTTCSSCEECCCCSCGGGCCHHHHTCC
T ss_pred ccccCccccccccccCCCCCCCcChhhccCc
Confidence 9876543332333445699999999998754
No 237
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.94 E-value=2.3e-26 Score=240.44 Aligned_cols=170 Identities=35% Similarity=0.654 Sum_probs=142.6
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhH-----HHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKG-----FAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++......... .+++.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 368999999999999999999874 7899999998654322211 167899999999999999999999987655
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC--cEEcCCCCCCEEEcCCCc-----E
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQS--FIHRDLKPSNILLGDDMR-----A 735 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~--ivHrDlkp~NIll~~~~~-----~ 735 (779)
++||||+++++|.+++.... ..+++..++.++.|++.||+|||+ .+ |+||||||+||+++.++. +
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~lH~---~~~~ivH~dikp~Nil~~~~~~~~~~~~ 168 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKA----HPIKWSVKLRLMLDIALGIEYMQN---QNPPIVHRDLRSPNIFLQSLDENAPVCA 168 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCSCCSGGGEEESCCCTTCSCCE
T ss_pred -eEEEEecCCCCHHHHHhccc----CCccHHHHHHHHHHHHHHHHHHHh---CCCCeecCCCCcceEEEeccCCCCceeE
Confidence 79999999999998885543 358999999999999999999996 67 999999999999988776 9
Q ss_pred EEEeeccceecCCCCCcccccccccCCcccccccccc
Q 004020 736 KVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 736 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
||+|||+++..... .....||+.|+|||++.+
T Consensus 169 kl~Dfg~~~~~~~~-----~~~~~g~~~y~aPE~~~~ 200 (287)
T 4f0f_A 169 KVADFGLSQQSVHS-----VSGLLGNFQWMAPETIGA 200 (287)
T ss_dssp EECCCTTCBCCSSC-----EECCCCCCTTSCGGGSSC
T ss_pred EeCCCCcccccccc-----ccccCCCccccCchhhcc
Confidence 99999999754331 234579999999999843
No 238
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.94 E-value=2.3e-26 Score=243.26 Aligned_cols=180 Identities=27% Similarity=0.430 Sum_probs=141.2
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccc-cChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAV-VSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
..++|++.+.||+|+||.||+|.. .+++.||+|++.... ......+++.+|++++++++||||+++++++...+..++
T Consensus 30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 109 (310)
T 2wqm_A 30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI 109 (310)
T ss_dssp SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence 345799999999999999999986 478999999987532 234556789999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++++|.+++...... ...+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++.
T Consensus 110 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~ 185 (310)
T 2wqm_A 110 VLELADAGDLSRMIKHFKKQ-KRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRF 185 (310)
T ss_dssp EEECCCSCBHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC-----
T ss_pred EEecCCCCCHHHHHHHhccc-ccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEEeccceee
Confidence 99999999999998654322 2358899999999999999999996 8999999999999999999999999999886
Q ss_pred cCCCCCcccccccccCCccccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...... ......|++.|+|||++.+.
T Consensus 186 ~~~~~~--~~~~~~~~~~y~aPE~~~~~ 211 (310)
T 2wqm_A 186 FSSKTT--AAHSLVGTPYYMSPERIHEN 211 (310)
T ss_dssp ---------------CCSSCCHHHHTTC
T ss_pred ecCCCc--cccccCCCeeEeChHHhCCC
Confidence 644321 12345689999999998654
No 239
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.94 E-value=6e-27 Score=260.81 Aligned_cols=174 Identities=32% Similarity=0.524 Sum_probs=142.4
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 668 (779)
.++|++.+.||+|+||.||+|.+..+..||||+++.... ..+++.+|++++++++||||+++++++.+ +..++|||
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e 258 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE 258 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence 467889999999999999999998888999999976542 24678999999999999999999999876 67899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
|+++|+|.+++..... ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++....
T Consensus 259 ~~~~gsL~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 332 (452)
T 1fmk_A 259 YMSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIED 332 (452)
T ss_dssp CCTTCBHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred hhcCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCCccceecCC
Confidence 9999999999965432 247899999999999999999996 8999999999999999999999999999987654
Q ss_pred CCCcccccccccCCccccccccccc
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.. ........+++.|+|||++.+.
T Consensus 333 ~~-~~~~~~~~~~~~y~aPE~~~~~ 356 (452)
T 1fmk_A 333 NE-YTARQGAKFPIKWTAPEAALYG 356 (452)
T ss_dssp -----------CCGGGSCHHHHHHC
T ss_pred Cc-eecccCCcccccccCHhHHhcC
Confidence 32 1222334578899999988654
No 240
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.94 E-value=6.7e-27 Score=244.61 Aligned_cols=176 Identities=31% Similarity=0.479 Sum_probs=151.0
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
..++|++.+.||+|+||.||+|... ++..||+|++.... ...+++.+|++++++++||||+++++++.+.+..++|
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v 87 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS---THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH---HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEE
Confidence 3567999999999999999999876 48899999987542 3457789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++..... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++..
T Consensus 88 ~e~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~ 161 (288)
T 3kfa_A 88 TEFMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLM 161 (288)
T ss_dssp EECCTTEEHHHHHHHCCT---TTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGGGTS
T ss_pred EEcCCCCcHHHHHHhccc---CCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccCccceec
Confidence 999999999999965432 358999999999999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCccccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.... ........+|+.|+|||++.+.
T Consensus 162 ~~~~-~~~~~~~~~~~~y~aPE~~~~~ 187 (288)
T 3kfa_A 162 TGDT-YTAHAGAKFPIKWTAPESLAYN 187 (288)
T ss_dssp CSSS-SEEETTEEECGGGCCHHHHHHC
T ss_pred cCCc-cccccCCccccCcCChhhhccC
Confidence 5432 2223345678899999998654
No 241
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.94 E-value=1.2e-26 Score=240.44 Aligned_cols=171 Identities=32% Similarity=0.540 Sum_probs=134.7
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccC--hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVS--EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|+.. ++.||+|++...... ....+.+.+|+++++.++||||+++++++...+..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 468999999999999999999875 899999998754322 22346789999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC---cEEcCCCCCCEEEcC--------CCcE
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQS---FIHRDLKPSNILLGD--------DMRA 735 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~---ivHrDlkp~NIll~~--------~~~~ 735 (779)
|||+++++|.+++.. ..+++..++.++.|++.||+|||+ ++ |+||||||+||+++. ++.+
T Consensus 85 ~e~~~~~~L~~~~~~------~~~~~~~~~~i~~~l~~~l~~lH~---~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~ 155 (271)
T 3dtc_A 85 MEFARGGPLNRVLSG------KRIPPDILVNWAVQIARGMNYLHD---EAIVPIIHRDLKSSNILILQKVENGDLSNKIL 155 (271)
T ss_dssp EECCTTEEHHHHHTS------SCCCHHHHHHHHHHHHHHHHHHHH---SSSSCCCCSCCSGGGEEESSCCSSSCCSSCCE
T ss_pred EEcCCCCCHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHh---CCCCceeecCCchHHEEEecccccccccCcce
Confidence 999999999998842 258899999999999999999997 56 999999999999986 6789
Q ss_pred EEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 736 KVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 736 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
||+|||+++...... .....||+.|+|||++.+.
T Consensus 156 kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~ 189 (271)
T 3dtc_A 156 KITDFGLAREWHRTT----KMSAAGAYAWMAPEVIRAS 189 (271)
T ss_dssp EECCCCC-----------------CCGGGSCHHHHHHC
T ss_pred EEccCCccccccccc----ccCCCCccceeCHHHhccC
Confidence 999999998664432 2244699999999998654
No 242
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.94 E-value=1.3e-26 Score=243.74 Aligned_cols=177 Identities=31% Similarity=0.474 Sum_probs=143.9
Q ss_pred hcCCcccceecccccEEEEEEEEcC----CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe-CCeE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHD----GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD-GNER 663 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~ 663 (779)
..+|++.+.||+|+||.||+|+..+ ...||+|.+.... .....+.+.+|++++++++||||+++++++.. ++..
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 102 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT-DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP 102 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC-CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCce
Confidence 3468889999999999999997642 3368999887533 34556789999999999999999999998654 5678
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
++||||+++++|.+++.... ..+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||++
T Consensus 103 ~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~a 175 (298)
T 3f66_A 103 LVVLPYMKHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLA 175 (298)
T ss_dssp EEEEECCTTCBHHHHHHCTT----CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSCGGG
T ss_pred EEEEeCCCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECccccc
Confidence 99999999999999985432 257899999999999999999996 89999999999999999999999999999
Q ss_pred eecCCCCCc--ccccccccCCccccccccccc
Q 004020 744 RLAPDNGKH--SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~ 773 (779)
+........ .......||+.|+|||++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 207 (298)
T 3f66_A 176 RDMYDKEYYSVHNKTGAKLPVKWMALESLQTQ 207 (298)
T ss_dssp CCCSCGGGCBC-----CCBCGGGSCHHHHHHC
T ss_pred ccccccchhccccccCCCCCccccChHHhcCC
Confidence 866443211 122345678899999998654
No 243
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.94 E-value=3.6e-26 Score=245.35 Aligned_cols=180 Identities=27% Similarity=0.422 Sum_probs=150.3
Q ss_pred HHHHHHhhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHc--CCCCccceEeeEEEe
Q 004020 582 IQVLRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTK--VRHRHLVGLLGYCLD 659 (779)
Q Consensus 582 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~ 659 (779)
+.....+.++|++.+.||+|+||.||+|+. +++.||+|++... ....+.+|++++.. ++||||+++++++..
T Consensus 34 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~ 107 (342)
T 1b6c_B 34 LLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNK 107 (342)
T ss_dssp HHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG-----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEEC
T ss_pred eeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch-----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecc
Confidence 344556778999999999999999999987 4899999998643 33567788888887 789999999999988
Q ss_pred CC----eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcC-----CCCCcEEcCCCCCCEEEc
Q 004020 660 GN----ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGL-----AHQSFIHRDLKPSNILLG 730 (779)
Q Consensus 660 ~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-----~~~~ivHrDlkp~NIll~ 730 (779)
.+ ..++||||+++|+|.+++... .+++..++.++.|++.||+|||.. +..+|+||||||+||+++
T Consensus 108 ~~~~~~~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~ 181 (342)
T 1b6c_B 108 DNGTWTQLWLVSDYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK 181 (342)
T ss_dssp CCSSCCCEEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEEC
T ss_pred cCCccceeEEEEeecCCCcHHHHHhcc------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEEC
Confidence 76 789999999999999999543 478999999999999999999921 027999999999999999
Q ss_pred CCCcEEEEeeccceecCCCCCcc--cccccccCCccccccccccc
Q 004020 731 DDMRAKVADFGLVRLAPDNGKHS--IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 731 ~~~~~kl~DFG~a~~~~~~~~~~--~~~~~~gt~~y~APE~l~~~ 773 (779)
.++.+||+|||+++......... ......||+.|+|||++.+.
T Consensus 182 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 226 (342)
T 1b6c_B 182 KNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDS 226 (342)
T ss_dssp TTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSC
T ss_pred CCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhccc
Confidence 99999999999998765543211 12345799999999998765
No 244
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.94 E-value=2.4e-26 Score=241.60 Aligned_cols=175 Identities=20% Similarity=0.319 Sum_probs=147.8
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l 665 (779)
..++|++.+.||+|+||.||+|+. .+++.||+|++.... ..+.+.+|+++++++ +|++++++++++......++
T Consensus 8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l 83 (298)
T 1csn_A 8 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS----DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL 83 (298)
T ss_dssp ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT----TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred cccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC----ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence 356899999999999999999986 578999999986433 224578899999999 79999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc-----EEEEee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR-----AKVADF 740 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~-----~kl~DF 740 (779)
||||+ +++|.+++.... ..+++..++.++.||+.||+|||+ ++|+||||||+||+++.++. +||+||
T Consensus 84 v~e~~-~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Df 155 (298)
T 1csn_A 84 VIDLL-GPSLEDLLDLCG----RKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDF 155 (298)
T ss_dssp EEECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCC
T ss_pred EEEec-CCCHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEEEC
Confidence 99999 999999996542 258999999999999999999996 89999999999999987776 999999
Q ss_pred ccceecCCCCCc-----ccccccccCCcccccccccccC
Q 004020 741 GLVRLAPDNGKH-----SIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 741 G~a~~~~~~~~~-----~~~~~~~gt~~y~APE~l~~~~ 774 (779)
|+++........ .......||+.|+|||++.+..
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 194 (298)
T 1csn_A 156 GMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGRE 194 (298)
T ss_dssp TTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC
T ss_pred ccccccccccccccccccCccCCCCCcccCCchhhcCCC
Confidence 999876553221 1124457999999999987643
No 245
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.94 E-value=3.7e-26 Score=240.90 Aligned_cols=173 Identities=28% Similarity=0.478 Sum_probs=150.1
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.+.|++.+.||+|+||.||+|+.. +++.||+|++..... ....+.+.+|+.++++++||||+++++++...+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 99 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM 99 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTC-STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEeccccc-HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence 457999999999999999999764 689999999875532 334578999999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++++|.+++.. ..+++..+..++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 100 e~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~ 170 (303)
T 3a7i_A 100 EYLGGGSALDLLEP------GPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT 170 (303)
T ss_dssp ECCTTEEHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECB
T ss_pred EeCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeecccceecC
Confidence 99999999998843 258899999999999999999996 899999999999999999999999999998765
Q ss_pred CCCCcccccccccCCccccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
... .......||+.|+|||++.+.
T Consensus 171 ~~~--~~~~~~~~~~~y~aPE~~~~~ 194 (303)
T 3a7i_A 171 DTQ--IKRNTFVGTPFWMAPEVIKQS 194 (303)
T ss_dssp TTB--CCBCCCCSCGGGCCHHHHTTC
T ss_pred ccc--cccCccCCCcCccCHHHHhcC
Confidence 432 122345799999999998754
No 246
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.94 E-value=2.2e-26 Score=249.73 Aligned_cols=172 Identities=27% Similarity=0.375 Sum_probs=138.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC-----
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN----- 661 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----- 661 (779)
..++|++.+.||+|+||.||+|+.. +++.||||++..........+.+.+|+.+++.++||||+++++++...+
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 102 (371)
T 2xrw_A 23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 102 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence 3578999999999999999999765 6889999999765555566678899999999999999999999998765
Q ss_pred -eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEee
Q 004020 662 -ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADF 740 (779)
Q Consensus 662 -~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DF 740 (779)
..++||||+++ +|.+.+.. .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++.+||+||
T Consensus 103 ~~~~lv~e~~~~-~l~~~~~~-------~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Df 171 (371)
T 2xrw_A 103 QDVYIVMELMDA-NLCQVIQM-------ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF 171 (371)
T ss_dssp CEEEEEEECCSE-EHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred cceEEEEEcCCC-CHHHHHhh-------ccCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEEEe
Confidence 68999999975 78777731 37889999999999999999997 89999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccCCccccccccccc
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+++...... ......||+.|+|||++.+.
T Consensus 172 g~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~ 201 (371)
T 2xrw_A 172 GLARTAGTSF---MMTPYVVTRYYRAPEVILGM 201 (371)
T ss_dssp CC-------------------CTTCCHHHHTTC
T ss_pred eccccccccc---ccCCceecCCccCHHHhcCC
Confidence 9998664321 22345799999999998764
No 247
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.94 E-value=1.5e-26 Score=246.15 Aligned_cols=173 Identities=27% Similarity=0.422 Sum_probs=141.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC------hhHHHHHHHHHHHHHcCCCCccceEeeEEEeC
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS------EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG 660 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 660 (779)
+.++|++.+.||+|+||.||+|+.. +++.||||++...... ......+.+|++++++++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 4568999999999999999999875 5889999998754321 12234588999999999999999999998765
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc---EEE
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR---AKV 737 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~---~kl 737 (779)
+ .++||||+++++|.+++... ..+++..++.++.||+.||+|||+ ++|+||||||+||+++.++. +||
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl 158 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGN-----KRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKI 158 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTT-----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSSCCEEE
T ss_pred c-eEEEEecCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCCCeEEE
Confidence 5 89999999999999988543 258899999999999999999996 89999999999999987654 999
Q ss_pred EeeccceecCCCCCcccccccccCCcccccccccc
Q 004020 738 ADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 738 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
+|||+++..... .......||+.|+|||++.+
T Consensus 159 ~Dfg~~~~~~~~---~~~~~~~gt~~y~aPE~~~~ 190 (322)
T 2ycf_A 159 TDFGHSKILGET---SLMRTLCGTPTYLAPEVLVS 190 (322)
T ss_dssp CCCTTCEECCCC---HHHHHHHSCCTTCCHHHHHH
T ss_pred ccCccceecccc---cccccccCCcCccCchhhcc
Confidence 999999876432 12234569999999999853
No 248
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.94 E-value=6.8e-27 Score=253.26 Aligned_cols=179 Identities=20% Similarity=0.290 Sum_probs=141.6
Q ss_pred hhcCCcccceecccccEEEEEEEEcC------CcEEEEEEecccccChh---------HHHHHHHHHHHHHcCCCCccce
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHD------GTKIAVKRMESAVVSEK---------GFAEFKSEIAVLTKVRHRHLVG 652 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~---------~~~~~~~E~~~l~~l~h~niv~ 652 (779)
..++|++.+.||+|+||.||+|.+.. ++.||+|++........ ....+..|+..+..++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34689999999999999999998764 47899999865431100 0123445667778889999999
Q ss_pred EeeEEEeC----CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEE
Q 004020 653 LLGYCLDG----NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNIL 728 (779)
Q Consensus 653 ~~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIl 728 (779)
+++++... ...++||||+ +++|.+++.... ..+++..++.|+.||+.||+|||+ ++|+||||||+|||
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~----~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nil 184 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA----KRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNLL 184 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEE
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEE
Confidence 99998765 4579999999 999999986532 358999999999999999999997 79999999999999
Q ss_pred Ec--CCCcEEEEeeccceecCCCCCcc-----cccccccCCcccccccccccC
Q 004020 729 LG--DDMRAKVADFGLVRLAPDNGKHS-----IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 729 l~--~~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~gt~~y~APE~l~~~~ 774 (779)
++ .++.+||+|||+++.+....... ......||+.|+|||++.+..
T Consensus 185 l~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 237 (364)
T 3op5_A 185 LNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVA 237 (364)
T ss_dssp EESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCC
T ss_pred EecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCC
Confidence 99 88999999999998765432111 113345999999999987654
No 249
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=2.9e-26 Score=239.66 Aligned_cols=175 Identities=25% Similarity=0.435 Sum_probs=145.7
Q ss_pred cCCcccc-eecccccEEEEEEEEc---CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 590 NNFSEEN-VLGRGGFGTVYKGELH---DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 590 ~~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
++|.+.+ .||+|+||.||+|... ++..||+|+++... .....+++.+|++++++++||||+++++++ ..+..++
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT-EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc-chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 4566666 9999999999999753 57889999997643 345567899999999999999999999999 5567899
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++.
T Consensus 87 v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~ 159 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKA 159 (287)
T ss_dssp EEECCTTEEHHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEeCCCCCHHHHHHhCC----ccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECcccceee
Confidence 999999999999985432 358999999999999999999996 8999999999999999999999999999987
Q ss_pred cCCCCCcc-cccccccCCccccccccccc
Q 004020 746 APDNGKHS-IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~~-~~~~~~gt~~y~APE~l~~~ 773 (779)
........ ......||+.|+|||++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 188 (287)
T 1u59_A 160 LGADDSYYTARSAGKWPLKWYAPECINFR 188 (287)
T ss_dssp CTTCSCEECCCCSSCCCGGGCCHHHHHHC
T ss_pred eccCcceeeccccccccccccCHHHhccC
Confidence 75432221 12234578999999998643
No 250
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.94 E-value=9.4e-27 Score=248.07 Aligned_cols=176 Identities=31% Similarity=0.488 Sum_probs=137.9
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCc----EEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGT----KIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
.++|++.+.||+|+||.||+|++. +++ +||+|.+.... .....+++.+|+.++++++||||+++++++.... .
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~ 91 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT-SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V 91 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCS-SCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-E
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeecccc-CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-c
Confidence 367999999999999999999864 444 35777765432 2345578899999999999999999999998765 7
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
++|+||+++|+|.+++.... ..+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.+||+|||++
T Consensus 92 ~~v~~~~~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~DfG~a 164 (327)
T 3lzb_A 92 QLITQLMPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLA 164 (327)
T ss_dssp EEEECCCSSCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTC-
T ss_pred eEEEEecCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEccCcce
Confidence 89999999999999986543 258899999999999999999997 89999999999999999999999999999
Q ss_pred eecCCCCCcccccccccCCccccccccccc
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+...............||+.|+|||++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~ 194 (327)
T 3lzb_A 165 KLLGAEEKEYHAEGGKVPIKWMALESILHR 194 (327)
T ss_dssp ---------------CCCGGGSCHHHHHHC
T ss_pred eEccCccccccccCCCccccccCHHHHcCC
Confidence 876544333333445678899999998754
No 251
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-26 Score=260.71 Aligned_cols=223 Identities=18% Similarity=0.216 Sum_probs=194.2
Q ss_pred CCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCc
Q 004020 109 SGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPG 188 (779)
Q Consensus 109 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~ 188 (779)
..+++|++|+|++|.++.+++..|..+++|++|+|++|.+.+ .+| +..+++|+.|+|++|.|++..+ .++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~~-------~~~ 100 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQELLV-------GPS 100 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEE--CTTCTTCCEEECCSSEEEEEEE-------CTT
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-Ccc--cccCCCCCEEEecCCcCCCCCC-------CCC
Confidence 456689999999999999999999999999999999999976 333 9999999999999999996542 378
Q ss_pred ccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEc
Q 004020 189 LMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSV 267 (779)
Q Consensus 189 L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l 267 (779)
|++|+|++|.|++..+. .+++|+.|+|++|.+++.+| .+..+++|+.|+|
T Consensus 101 L~~L~L~~N~l~~~~~~-----------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 101 IETLHAANNNISRVSCS-----------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp CCEEECCSSCCCCEEEC-----------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred cCEEECcCCcCCCCCcc-----------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 99999999999965442 35789999999999999877 5888999999999
Q ss_pred cCCccccccChhhh-CCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchh
Q 004020 268 RDNQLTGIVPSSLV-NLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAV 346 (779)
Q Consensus 268 ~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (779)
++|.|++.+|..+. .+++|+.|+|++|.|++..+..
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------------- 188 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV------------------------------------------- 188 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-------------------------------------------
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-------------------------------------------
Confidence 99999999998887 7999999999999998764321
Q ss_pred cccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceecc
Q 004020 347 LAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVS 426 (779)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 426 (779)
..++|+.|+|++|.|++. |..|..+++|+.|+|++|+|++ +|..+..+++|+.|+|+
T Consensus 189 ---------------------~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 189 ---------------------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp ---------------------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred ---------------------cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence 123799999999999985 4459999999999999999994 89999999999999999
Q ss_pred CCccc-ccCCC
Q 004020 427 NNHLF-GKVPN 436 (779)
Q Consensus 427 ~N~l~-g~iP~ 436 (779)
+|+++ +.+|.
T Consensus 246 ~N~l~c~~~~~ 256 (487)
T 3oja_A 246 GNGFHCGTLRD 256 (487)
T ss_dssp TCCBCHHHHHH
T ss_pred CCCCcCcchHH
Confidence 99998 66554
No 252
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=99.94 E-value=9.6e-27 Score=254.49 Aligned_cols=175 Identities=23% Similarity=0.376 Sum_probs=140.8
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe------
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE------ 662 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------ 662 (779)
..+|++.+.||+|+||.||+|+...+..||+|++..... ...+|+++++.++||||+++++++...+.
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~ 112 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVF 112 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceE
Confidence 357999999999999999999988777899998864321 12379999999999999999999965443
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEc-CCCcEEEEeec
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLG-DDMRAKVADFG 741 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~-~~~~~kl~DFG 741 (779)
.++||||++++.+ +.+..... ....+++..+..++.||++||+|||+ .+|+||||||+||+++ .++.+||+|||
T Consensus 113 ~~lv~e~~~~~l~-~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG 187 (394)
T 4e7w_A 113 LNLVLEYVPETVY-RASRHYAK-LKQTMPMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFG 187 (394)
T ss_dssp EEEEEECCSEEHH-HHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred EEEEeeccCccHH-HHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCC
Confidence 7899999987544 33332221 12368899999999999999999997 8999999999999999 79999999999
Q ss_pred cceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 742 LVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 742 ~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+|+....... .....||+.|+|||++.+...++
T Consensus 188 ~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~ 220 (394)
T 4e7w_A 188 SAKILIAGEP---NVSYICSRYYRAPELIFGATNYT 220 (394)
T ss_dssp TCEECCTTCC---CCSSCSCGGGCCHHHHTTCSSCC
T ss_pred CcccccCCCC---CcccccCcCccCHHHHcCCCCCC
Confidence 9987644322 23457899999999998766554
No 253
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=245.87 Aligned_cols=180 Identities=31% Similarity=0.419 Sum_probs=146.9
Q ss_pred hcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe----CCeE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD----GNER 663 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~ 663 (779)
.++|++.+.||+|+||.||+|+. .+++.||+|++... .....+.+.+|++++++++||||+++++++.. ....
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 105 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH--EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEA 105 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC--CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCcee
Confidence 46799999999999999999987 57899999998653 34556789999999999999999999999873 3468
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
++||||+++++|.+++...... ...+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||++
T Consensus 106 ~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 106 WLLLPFFKRGTLWNEIERLKDK-GNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEEECCTTCBHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred EEEEEeCCCCcHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 8999999999999998764332 2368999999999999999999997 79999999999999999999999999998
Q ss_pred eecCCCCCcc-------cccccccCCcccccccccccC
Q 004020 744 RLAPDNGKHS-------IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 744 ~~~~~~~~~~-------~~~~~~gt~~y~APE~l~~~~ 774 (779)
+......... ......||+.|+|||++.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 219 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQS 219 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCS
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCC
Confidence 7653211100 012345799999999987543
No 254
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.94 E-value=4.2e-26 Score=239.81 Aligned_cols=175 Identities=29% Similarity=0.366 Sum_probs=149.7
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc---C----hhHHHHHHHHHHHHHcCC-CCccceEeeEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV---S----EKGFAEFKSEIAVLTKVR-HRHLVGLLGYC 657 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~----~~~~~~~~~E~~~l~~l~-h~niv~~~~~~ 657 (779)
...++|++.+.||+|+||.||+|+.. +++.||+|++..... . ....+.+.+|+++++++. ||||+++++++
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 45678999999999999999999875 689999999865421 1 123456889999999996 99999999999
Q ss_pred EeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEE
Q 004020 658 LDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKV 737 (779)
Q Consensus 658 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl 737 (779)
...+..++||||+++++|.+++.... .+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||
T Consensus 94 ~~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl 165 (298)
T 1phk_A 94 ETNTFFFLVFDLMKKGELFDYLTEKV-----TLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKL 165 (298)
T ss_dssp ECSSEEEEEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEE
T ss_pred ccCCeEEEEEeccCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCCcEEE
Confidence 99999999999999999999986542 58899999999999999999996 89999999999999999999999
Q ss_pred EeeccceecCCCCCcccccccccCCcccccccccc
Q 004020 738 ADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 738 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
+|||+++....... .....||+.|+|||++.+
T Consensus 166 ~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~ 197 (298)
T 1phk_A 166 TDFGFSCQLDPGEK---LREVCGTPSYLAPEIIEC 197 (298)
T ss_dssp CCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHH
T ss_pred ecccchhhcCCCcc---cccccCCccccCHHHhcc
Confidence 99999987654322 234568999999999863
No 255
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=2.2e-26 Score=245.96 Aligned_cols=177 Identities=27% Similarity=0.481 Sum_probs=141.5
Q ss_pred hcCCcccceecccccEEEEEEEEcC-----CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHD-----GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
.++|++.+.||+|+||.||+|+... +..||+|++.... ......++.+|++++++++||||+++++++...+..
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 121 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY-TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM 121 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCc
Confidence 3578889999999999999997653 2469999987543 344556799999999999999999999999999999
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
++||||+++++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||++
T Consensus 122 ~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~ 194 (333)
T 1mqb_A 122 MIITEYMENGALDKFLREKD----GEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLS 194 (333)
T ss_dssp EEEEECCTTEEHHHHHHHTT----TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-
T ss_pred EEEEeCCCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECCCCcc
Confidence 99999999999999986532 258899999999999999999997 79999999999999999999999999999
Q ss_pred eecCCCCCc-ccccccccCCccccccccccc
Q 004020 744 RLAPDNGKH-SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~ 773 (779)
+........ .......+|+.|+|||++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 225 (333)
T 1mqb_A 195 RVLEDDPEATYTTSGGKIPIRWTAPEAISYR 225 (333)
T ss_dssp ----------------CCCGGGSCHHHHHSC
T ss_pred hhhccccccccccCCCCccccccCchhcccC
Confidence 876543211 112233468899999998654
No 256
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.94 E-value=2.9e-27 Score=257.36 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=140.5
Q ss_pred hcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccc-cChhHHHHHHHHH---HHHHcCCCCccceEe-------eE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAV-VSEKGFAEFKSEI---AVLTKVRHRHLVGLL-------GY 656 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~~E~---~~l~~l~h~niv~~~-------~~ 656 (779)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ......+.+.+|+ +.+++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46789999999999999999986 469999999997542 2334567889999 455556899999998 66
Q ss_pred EEeCCe-----------------EEEEEEecCCCChhhHhhhcccCC--CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 004020 657 CLDGNE-----------------RLLVYEYMPQGTLSRHLFNRKEEG--LKPLEWTRRLTIALDVARGVEYLHGLAHQSF 717 (779)
Q Consensus 657 ~~~~~~-----------------~~lv~e~~~~gsL~~~l~~~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~i 717 (779)
+.+.+. .|+||||+ +|+|.+++....... ...+++..++.|+.||+.||+|||+ ++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh---CCe
Confidence 665532 78999999 689999997643211 1234458888999999999999997 799
Q ss_pred EEcCCCCCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 718 IHRDLKPSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 718 vHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+.
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~ 277 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARR 277 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhccc
Confidence 9999999999999999999999999986432 2234567 999999999876
No 257
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.94 E-value=2.1e-26 Score=242.86 Aligned_cols=172 Identities=29% Similarity=0.477 Sum_probs=146.3
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
+.++|.+.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSP--AFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV 84 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccc--ccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence 4568999999999999999999875 78999999987543 22335688999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE---cCCCcEEEEeeccc
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL---GDDMRAKVADFGLV 743 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll---~~~~~~kl~DFG~a 743 (779)
|||+++++|.+++.... .+++..+..++.|++.||+|||+ .+|+||||||+||++ +.++.+||+|||++
T Consensus 85 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~ 156 (304)
T 2jam_A 85 MQLVSGGELFDRILERG-----VYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLS 156 (304)
T ss_dssp ECCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTT
T ss_pred EEcCCCccHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEccCCcc
Confidence 99999999999886542 47899999999999999999996 899999999999999 78899999999998
Q ss_pred eecCCCCCcccccccccCCccccccccccc
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+..... ......||+.|+|||++.+.
T Consensus 157 ~~~~~~----~~~~~~~~~~y~aPE~~~~~ 182 (304)
T 2jam_A 157 KMEQNG----IMSTACGTPGYVAPEVLAQK 182 (304)
T ss_dssp CCCCCB----TTHHHHSCCCBCCTTTBSSC
T ss_pred eecCCC----ccccccCCCCccChHHhccC
Confidence 764332 12334689999999998754
No 258
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.94 E-value=2.5e-26 Score=240.67 Aligned_cols=176 Identities=27% Similarity=0.405 Sum_probs=143.5
Q ss_pred hcCCcccc-eecccccEEEEEEEEc---CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEE
Q 004020 589 TNNFSEEN-VLGRGGFGTVYKGELH---DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 589 ~~~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 664 (779)
.++|++.+ .||+|+||.||+|... +++.||+|++..........+++.+|+++++.++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 35788877 9999999999999643 468899999976654444567899999999999999999999999 567789
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++++|.+++.... .+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||+++
T Consensus 94 lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 165 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK 165 (291)
T ss_dssp EEEECCTTEEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEeCCCCCHHHHHHhCc-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence 9999999999999996532 48899999999999999999997 899999999999999999999999999998
Q ss_pred ecCCCCCcc-cccccccCCccccccccccc
Q 004020 745 LAPDNGKHS-IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~-~~~~~~gt~~y~APE~l~~~ 773 (779)
......... ......+++.|+|||++.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 195 (291)
T 1xbb_A 166 ALRADENYYKAQTHGKWPVKWYAPECINYY 195 (291)
T ss_dssp ECCTTCSEEEC----CCCGGGCCHHHHHHC
T ss_pred eeccCCCcccccccCCCCceeeChHHhccC
Confidence 765443221 12233567899999998653
No 259
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.94 E-value=1.1e-26 Score=250.13 Aligned_cols=176 Identities=26% Similarity=0.440 Sum_probs=151.0
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChh---------------HHHHHHHHHHHHHcCCCCccceE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEK---------------GFAEFKSEIAVLTKVRHRHLVGL 653 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~---------------~~~~~~~E~~~l~~l~h~niv~~ 653 (779)
.++|++.+.||+|+||.||+|+. +++.||+|++........ ..+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999988 899999999875432211 12789999999999999999999
Q ss_pred eeEEEeCCeEEEEEEecCCCChhhH------hhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCE
Q 004020 654 LGYCLDGNERLLVYEYMPQGTLSRH------LFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNI 727 (779)
Q Consensus 654 ~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NI 727 (779)
++++.+.+..++||||+++++|.++ +... ....+++..++.++.||+.||+|||+ ..+|+||||||+||
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Ni 183 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKN---YTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNI 183 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSS---SCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc---cccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhE
Confidence 9999999999999999999999998 4321 12468999999999999999999995 37999999999999
Q ss_pred EEcCCCcEEEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 728 LLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 728 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
+++.++.+||+|||.++..... ......||+.|+|||++.+..
T Consensus 184 l~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~ 226 (348)
T 2pml_X 184 LMDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNES 226 (348)
T ss_dssp EECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCC
T ss_pred EEcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCC
Confidence 9999999999999999876443 224457999999999998763
No 260
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=244.79 Aligned_cols=170 Identities=34% Similarity=0.541 Sum_probs=137.3
Q ss_pred cCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEEe
Q 004020 590 NNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYEY 669 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 669 (779)
++|++.+.||+|+||.||+|+.. ++.||+|++... ...+.+.+|++++++++||||+++++++. +..++||||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~ 80 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE----SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEY 80 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST----THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEEC
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh----hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEc
Confidence 57889999999999999999875 788999998643 34567899999999999999999999876 447999999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc-EEEEeeccceecCC
Q 004020 670 MPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR-AKVADFGLVRLAPD 748 (779)
Q Consensus 670 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~-~kl~DFG~a~~~~~ 748 (779)
+++++|.+++..... ...+++..++.++.|+++||+|||+.+.++|+||||||+||+++.++. +||+|||+++....
T Consensus 81 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~ 158 (307)
T 2eva_A 81 AEGGSLYNVLHGAEP--LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158 (307)
T ss_dssp CTTCBHHHHHHCSSS--EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred CCCCCHHHHHhccCC--CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence 999999999965432 224788899999999999999999643378999999999999998886 79999999876543
Q ss_pred CCCcccccccccCCccccccccccc
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
. .....||+.|+|||++.+.
T Consensus 159 ~-----~~~~~gt~~y~aPE~~~~~ 178 (307)
T 2eva_A 159 H-----MTNNKGSAAWMAPEVFEGS 178 (307)
T ss_dssp -----------CCTTSSCHHHHTCC
T ss_pred c-----cccCCCCCceEChhhhCCC
Confidence 2 1234699999999998764
No 261
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.94 E-value=2.1e-26 Score=249.94 Aligned_cols=174 Identities=25% Similarity=0.407 Sum_probs=145.9
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE---
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER--- 663 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~--- 663 (779)
+.++|.+.+.||+|+||.||+|... +++.||+|++..........+++.+|+.+++.++||||+++++++...+..
T Consensus 40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 4578999999999999999999765 689999999987655566678899999999999999999999999877654
Q ss_pred ---EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEee
Q 004020 664 ---LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADF 740 (779)
Q Consensus 664 ---~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DF 740 (779)
++||||++ ++|.+++. ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+||
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Df 188 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMG-------MEFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDF 188 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTT-------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECST
T ss_pred eeEEEEEcccc-ccHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEEEEec
Confidence 99999997 68877762 148899999999999999999997 79999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
|+++..... .....||+.|+|||++.+...++
T Consensus 189 g~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~ 220 (371)
T 4exu_A 189 GLARHADAE-----MTGYVVTRWYRAPEVILSWMHYN 220 (371)
T ss_dssp TCC-------------CTTCCCTTSCHHHHSCCSCCC
T ss_pred CcccccccC-----cCCcccCccccCHHHhcCCCCCC
Confidence 999865432 23457899999999998754444
No 262
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.93 E-value=1.3e-26 Score=247.08 Aligned_cols=181 Identities=29% Similarity=0.424 Sum_probs=145.3
Q ss_pred hcCCcccceecccccEEEEEEEE------cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL------HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE 662 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 662 (779)
.++|++.+.||+|+||.||+|+. .+++.||+|++.... ......++.+|+.++++++||||+++++++...+.
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 107 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC-SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 107 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc-chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence 46899999999999999999973 357789999996443 34556678999999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHhhhcccC--CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC---CCcEEE
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEE--GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD---DMRAKV 737 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~---~~~~kl 737 (779)
.++||||+++++|.+++...... ....+++..++.++.||+.||+|||+ .+|+||||||+||+++. +..+||
T Consensus 108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~~~~~~kl 184 (327)
T 2yfx_A 108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKI 184 (327)
T ss_dssp CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCCCcceEEE
Confidence 99999999999999999765421 12358899999999999999999996 89999999999999984 456999
Q ss_pred EeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 738 ADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 738 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+|||+++...............||+.|+|||++.+.
T Consensus 185 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 220 (327)
T 2yfx_A 185 GDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEG 220 (327)
T ss_dssp CCCHHHHHHHC------CCGGGSCGGGCCHHHHHHC
T ss_pred CccccccccccccccccCCCcCCCcceeCHhHhcCC
Confidence 999998765443222223345689999999998654
No 263
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=99.93 E-value=1.4e-26 Score=255.38 Aligned_cols=174 Identities=25% Similarity=0.404 Sum_probs=139.7
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC----C--e
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG----N--E 662 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~----~--~ 662 (779)
.+|++.+.||+|+||.||+|+.. +++.||||++.... ....+|++++++++||||+++++++... + .
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~ 127 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY 127 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCccee
Confidence 36889999999999999999875 68999999986432 1234799999999999999999998642 2 3
Q ss_pred EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC-CcEEEEeec
Q 004020 663 RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD-MRAKVADFG 741 (779)
Q Consensus 663 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~-~~~kl~DFG 741 (779)
.++||||+++ ++.+.+..... ....+++..+..++.||++||+|||+ ++|+||||||+|||++.+ +.+||+|||
T Consensus 128 ~~lv~e~~~~-~l~~~~~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG 202 (420)
T 1j1b_A 128 LNLVLDYVPE-TVYRVARHYSR-AKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFG 202 (420)
T ss_dssp EEEEEECCCE-EHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred EEeehhcccc-cHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeEEeccch
Confidence 5789999975 66666544322 22368999999999999999999996 899999999999999955 678999999
Q ss_pred cceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 742 LVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 742 ~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+++....... ....+||+.|+|||++.+...++
T Consensus 203 ~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~ 235 (420)
T 1j1b_A 203 SAKQLVRGEP---NVSYICSRYYRAPELIFGATDYT 235 (420)
T ss_dssp TCEECCTTCC---CCSCCSCTTSCCHHHHTTCSSCC
T ss_pred hhhhcccCCC---ceeeeeCCCcCCHHHHcCCCCCC
Confidence 9987654321 23457899999999998765544
No 264
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.93 E-value=3.8e-26 Score=243.93 Aligned_cols=170 Identities=19% Similarity=0.344 Sum_probs=145.7
Q ss_pred hcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEEe--CCeEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCLD--GNERL 664 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~--~~~~~ 664 (779)
.++|++.+.||+|+||.||+|+. .+++.||+|++... ..+.+.+|++++++++ ||||+++++++.+ ....+
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~ 109 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPA 109 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-----chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceE
Confidence 36799999999999999999976 47899999998643 2357889999999997 9999999999998 56789
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCC-cEEEEeeccc
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM-RAKVADFGLV 743 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~-~~kl~DFG~a 743 (779)
+||||+++++|.+++. .+++..+..++.||+.||+|||+ ++|+||||||+||+++.++ .+||+|||++
T Consensus 110 lv~e~~~~~~l~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a 178 (330)
T 3nsz_A 110 LVFEHVNNTDFKQLYQ--------TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLA 178 (330)
T ss_dssp EEEECCCCCCHHHHGG--------GCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTC
T ss_pred EEEeccCchhHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCCc
Confidence 9999999999998872 37888999999999999999996 8999999999999999776 8999999999
Q ss_pred eecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
+....... .....||+.|+|||++.+...++
T Consensus 179 ~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~ 209 (330)
T 3nsz_A 179 EFYHPGQE---YNVRVASRYFKGPELLVDYQMYD 209 (330)
T ss_dssp EECCTTCC---CCSCCSCGGGCCHHHHTTCCCCC
T ss_pred eEcCCCCc---cccccccccccChhhhcCCCcCC
Confidence 87654322 23457899999999997755444
No 265
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.93 E-value=2.2e-26 Score=246.88 Aligned_cols=178 Identities=26% Similarity=0.368 Sum_probs=145.7
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHH-HHcCCCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAV-LTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
..++|++.+.||+|+||.||+|+. .+++.||||++....... ...++..|..+ ++.++||||+++++++...+..++
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~l 127 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQ-EQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 127 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCH-HHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcH-HHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEE
Confidence 456899999999999999999986 478999999997654333 33455556555 778899999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++ +|.+++...... ...+++..++.++.||+.||+|||+ +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 128 v~e~~~~-~L~~~l~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~--~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 203 (340)
T 3an0_A 128 CMELMDT-SLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHS--KLSVIHRDVKPSNVLINALGQVKMCDFGISGY 203 (340)
T ss_dssp EECCCSE-EHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCSCCSTTEEECSTTCEEECCCSHHHH
T ss_pred EHHHhhC-cHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhh--cCCeecCCCCHHHEEECCCCCEEEeeCCCcee
Confidence 9999975 998888653322 2368999999999999999999996 23999999999999999999999999999987
Q ss_pred cCCCCCcccccccccCCccccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.... .......||+.|+|||++.+.
T Consensus 204 ~~~~---~~~~~~~gt~~y~aPE~~~~~ 228 (340)
T 3an0_A 204 LVDS---VAKTIDAGCKPYMAPERINPE 228 (340)
T ss_dssp HSCH---HHHHHSSCCCCCCCHHHHSCC
T ss_pred cccc---cccccCCCCccccCccccccc
Confidence 6432 122335799999999998543
No 266
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.93 E-value=1.8e-26 Score=247.04 Aligned_cols=170 Identities=32% Similarity=0.510 Sum_probs=135.8
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHH--HHcCCCCccceEeeEEEe-----CC
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAV--LTKVRHRHLVGLLGYCLD-----GN 661 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~~~~~~~~-----~~ 661 (779)
.++|++.+.||+|+||.||+|+. +++.||||++.... ...+..|.++ +..++||||+++++.+.. ..
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 85 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN-----RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM 85 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc-----hhhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence 46899999999999999999976 58999999986432 2333444444 455899999999986543 23
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC---------CcEEcCCCCCCEEEcCC
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQ---------SFIHRDLKPSNILLGDD 732 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~---------~ivHrDlkp~NIll~~~ 732 (779)
..++||||+++|+|.+++... ..++..++.++.||+.||+|||+ . +|+||||||+|||++.+
T Consensus 86 ~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~qi~~~L~~LH~---~~~~~~~~~~~ivH~Dikp~Nill~~~ 156 (336)
T 3g2f_A 86 EYLLVMEYYPNGSLXKYLSLH------TSDWVSSCRLAHSVTRGLAYLHT---ELPRGDHYKPAISHRDLNSRNVLVKND 156 (336)
T ss_dssp EEEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHC---CBCCGGGCBCCEECSSCSGGGEEECTT
T ss_pred eEEEEEecCCCCcHHHHHhhc------ccchhHHHHHHHHHHHHHHHHHh---hhccccccccceeecccccceEEEcCC
Confidence 568999999999999999543 24788999999999999999996 5 99999999999999999
Q ss_pred CcEEEEeeccceecCCCCC------cccccccccCCccccccccccc
Q 004020 733 MRAKVADFGLVRLAPDNGK------HSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 733 ~~~kl~DFG~a~~~~~~~~------~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+.+||+|||+++....... ........||+.|+|||++.+.
T Consensus 157 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 203 (336)
T 3g2f_A 157 GTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGA 203 (336)
T ss_dssp SCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTC
T ss_pred CcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCC
Confidence 9999999999987654321 1112345699999999998763
No 267
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.93 E-value=5.1e-27 Score=267.14 Aligned_cols=165 Identities=22% Similarity=0.246 Sum_probs=125.6
Q ss_pred eecccccEEEEEEE-EcCCcEEEEEEeccccc--------ChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEEE
Q 004020 597 VLGRGGFGTVYKGE-LHDGTKIAVKRMESAVV--------SEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 597 ~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv 666 (779)
..+.|+.|.+..++ ...|+.|++|.+..... .+...++|.+|+++|+++ .|+||+++++++++++..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 46677777777663 44689999999965421 123456799999999999 699999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||++|++|.+++.... +++.. +|+.||+.||+|+|+ +|||||||||+|||++++|++||+|||+|+..
T Consensus 321 MEyv~G~~L~d~i~~~~-----~l~~~---~I~~QIl~AL~ylH~---~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~ 389 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGE-----EIDRE---KILGSLLRSLAALEK---QGFWHDDVRPWNVMVDARQHARLIDFGSIVTT 389 (569)
T ss_dssp EECCCSEEHHHHHHTTC-----CCCHH---HHHHHHHHHHHHHHH---TTCEESCCCGGGEEECTTSCEEECCCTTEESC
T ss_pred EecCCCCcHHHHHHhCC-----CCCHH---HHHHHHHHHHHHHHH---CCceeccCchHhEEECCCCCEEEeecccCeeC
Confidence 99999999999996542 35543 588999999999996 89999999999999999999999999999876
Q ss_pred CCCCCcccccccccCCcccccccccccC
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
..... .....+||+.|||||++.+..
T Consensus 390 ~~~~~--~~~t~vGTp~YmAPE~l~g~~ 415 (569)
T 4azs_A 390 PQDCS--WPTNLVQSFFVFVNELFAENK 415 (569)
T ss_dssp C---C--CSHHHHHHHHHHHHHHC----
T ss_pred CCCCc--cccCceechhhccHHHhCCCC
Confidence 54322 234567999999999998764
No 268
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.93 E-value=5.4e-27 Score=247.17 Aligned_cols=183 Identities=26% Similarity=0.414 Sum_probs=133.0
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
..++|++.+.||+|+||.||+|+.. +++.||+|++..... ....+++.+|++++++++||||+++++++...+..++|
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC-QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC-----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc-chhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 3568999999999999999999754 689999999865432 23456788999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccC---CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 667 YEYMPQGTLSRHLFNRKEE---GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
|||+++++|.+++...... ....+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||++
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 168 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGSVQIADFGVS 168 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence 9999999999998653211 12358999999999999999999997 89999999999999999999999999998
Q ss_pred eecCCCCCc---ccccccccCCcccccccccccC
Q 004020 744 RLAPDNGKH---SIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 744 ~~~~~~~~~---~~~~~~~gt~~y~APE~l~~~~ 774 (779)
+........ .......||+.|+|||++.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~ 202 (303)
T 2vwi_A 169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVR 202 (303)
T ss_dssp HHCC---------------CCCTTCCHHHHHHHH
T ss_pred heeccCCCccchhhhcccCCCccccCHHHhcccc
Confidence 765432211 1123456999999999987543
No 269
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.93 E-value=4.9e-26 Score=241.21 Aligned_cols=174 Identities=31% Similarity=0.457 Sum_probs=144.3
Q ss_pred HhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
...++|++.+.||+|+||.||+|... +++.||+|++.... ..+++.+|++++++++||||+++++++...+..++
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 45678999999999999999999876 58999999986542 33578899999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++++|.+++.... ..+++..++.++.|++.||.|||+ .+|+||||||+||+++.++.+||+|||+++.
T Consensus 102 v~e~~~~~~L~~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 174 (314)
T 3com_A 102 VMEYCGAGSVSDIIRLRN----KTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAGQ 174 (314)
T ss_dssp EEECCTTEEHHHHHHHHT----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EeecCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeecccchh
Confidence 999999999999986432 258899999999999999999996 8999999999999999999999999999987
Q ss_pred cCCCCCcccccccccCCccccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...... ......||+.|+|||++.+.
T Consensus 175 ~~~~~~--~~~~~~~~~~y~aPE~~~~~ 200 (314)
T 3com_A 175 LTDTMA--KRNTVIGTPFWMAPEVIQEI 200 (314)
T ss_dssp CBTTBS--CBCCCCSCGGGCCHHHHSSS
T ss_pred hhhhcc--ccCccCCCCCccChhhcCCC
Confidence 654321 22345789999999998764
No 270
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.93 E-value=1.3e-26 Score=251.20 Aligned_cols=175 Identities=30% Similarity=0.480 Sum_probs=134.2
Q ss_pred CCcccceecccccEEEEEEEEc--C--CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe-CCeEEE
Q 004020 591 NFSEENVLGRGGFGTVYKGELH--D--GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD-GNERLL 665 (779)
Q Consensus 591 ~~~~~~~lg~G~~g~Vy~~~~~--~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~l 665 (779)
.|++.+.||+|+||.||+|+.. + +..||+|.++... .....+++.+|+.++++++||||+++++++.. .+..++
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT-DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS-CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 4677899999999999999764 2 2468999886532 34456789999999999999999999998765 457899
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+++|+|.+++.... ..+++..++.++.||++||+|||+ ++|+||||||+||+++.++.+||+|||+++.
T Consensus 169 v~e~~~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~ 241 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARD 241 (373)
T ss_dssp EEECCTTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred EEECCCCCCHHHHHhhcc----cCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeecccccc
Confidence 999999999999985432 247889999999999999999997 8999999999999999999999999999986
Q ss_pred cCCCCCc--ccccccccCCccccccccccc
Q 004020 746 APDNGKH--SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~~--~~~~~~~gt~~y~APE~l~~~ 773 (779)
....... .......+|+.|+|||++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 271 (373)
T 3c1x_A 242 MYDKEFDSVHNKTGAKLPVKWMALESLQTQ 271 (373)
T ss_dssp ----------------CCGGGSCHHHHHHC
T ss_pred ccccccccccccCCCCCcccccChHHhcCC
Confidence 6433211 112334678899999998654
No 271
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.93 E-value=1.3e-26 Score=244.27 Aligned_cols=173 Identities=25% Similarity=0.432 Sum_probs=143.2
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
..++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+++.+|++++++++||||+++++++...+..++|
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 94 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS--EEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM 94 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCC--HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence 4578999999999999999999876 58999999987543 33457889999999999999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++.... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||++...
T Consensus 95 ~e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 167 (302)
T 2j7t_A 95 IEFCPGGAVDAIMLELD----RGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKN 167 (302)
T ss_dssp EECCTTEEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHHHHH
T ss_pred EEeCCCCcHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCCccc
Confidence 99999999999886532 258899999999999999999997 89999999999999999999999999987543
Q ss_pred CCCCCcccccccccCCccccccccc
Q 004020 747 PDNGKHSIETRLAGTFGYLAPEYAA 771 (779)
Q Consensus 747 ~~~~~~~~~~~~~gt~~y~APE~l~ 771 (779)
... ........||+.|+|||++.
T Consensus 168 ~~~--~~~~~~~~~~~~y~aPE~~~ 190 (302)
T 2j7t_A 168 LKT--LQKRDSFIGTPYWMAPEVVM 190 (302)
T ss_dssp HHH--HHC-----CCGGGCCHHHHH
T ss_pred ccc--ccccccccCChhhcCCeeec
Confidence 211 11123346899999999985
No 272
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=243.49 Aligned_cols=176 Identities=29% Similarity=0.560 Sum_probs=147.4
Q ss_pred hcCCcccceecccccEEEEEEEE-----cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC--
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-----HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN-- 661 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-- 661 (779)
.++|++.+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|++++++++||||+++++++...+
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 117 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST--EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR 117 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC--SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCC
Confidence 35789999999999999999984 368899999987542 445678999999999999999999999987654
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..++||||+++++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||
T Consensus 118 ~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~Dfg 190 (326)
T 2w1i_A 118 NLKLIMEYLPYGSLRDYLQKHK----ERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFG 190 (326)
T ss_dssp CCEEEECCCTTCBHHHHHHHST----TSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCT
T ss_pred ceEEEEECCCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEecCc
Confidence 6799999999999999996543 258899999999999999999996 899999999999999999999999999
Q ss_pred cceecCCCCCcc-cccccccCCccccccccccc
Q 004020 742 LVRLAPDNGKHS-IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 742 ~a~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~ 773 (779)
+++......... ......++..|+|||++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 223 (326)
T 2w1i_A 191 LTKVLPQDKEYYKVKEPGESPIFWYAPESLTES 223 (326)
T ss_dssp TCEECCSSCSEEECSSCCSCCGGGCCHHHHHHC
T ss_pred chhhccccccccccccCCCCceeEECchhhcCC
Confidence 998775543221 12334578889999998653
No 273
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.93 E-value=3.5e-26 Score=239.04 Aligned_cols=178 Identities=30% Similarity=0.429 Sum_probs=152.9
Q ss_pred HHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 585 LRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 585 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
...+.++|++.+.||+|+||.||+|+.. +++.||+|++..........+.+.+|++++++++||||+++++++...+..
T Consensus 17 ~~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 96 (287)
T 2wei_A 17 QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF 96 (287)
T ss_dssp THHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred HHHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeE
Confidence 4556789999999999999999999876 689999999976654455667899999999999999999999999999999
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC---CcEEEEee
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD---MRAKVADF 740 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~---~~~kl~DF 740 (779)
++||||+++++|.+++.... .+++..++.++.||+.||+|||+ .+|+||||||+||+++.+ +.+||+||
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~Df 168 (287)
T 2wei_A 97 YIVGELYTGGELFDEIIKRK-----RFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDF 168 (287)
T ss_dssp EEEECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECST
T ss_pred EEEEEccCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEEecc
Confidence 99999999999999886543 58899999999999999999996 899999999999999754 47999999
Q ss_pred ccceecCCCCCcccccccccCCccccccccccc
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+++....... .....||+.|+|||++.+.
T Consensus 169 g~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~ 198 (287)
T 2wei_A 169 GLSTCFQQNTK---MKDRIGTAYYIAPEVLRGT 198 (287)
T ss_dssp TGGGTBCCCSS---CSCHHHHHTTCCHHHHTTC
T ss_pred CcceeecCCCc---cccccCcccccChHHhcCC
Confidence 99886644321 1234589999999998764
No 274
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.93 E-value=1.1e-26 Score=263.88 Aligned_cols=175 Identities=32% Similarity=0.522 Sum_probs=147.5
Q ss_pred hhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
..++|++.+.||+|+||.||+|++..+..||||+++.... ..+++.+|++++++++||||+++++++.+ +..++||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~ 340 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 340 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEee
Confidence 3467889999999999999999998888999999976542 24678999999999999999999999876 6789999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++|+|.+++..... ..+++.+++.++.||+.||+|||+ ++|+||||||+|||+++++.+||+|||+++...
T Consensus 341 e~~~~gsL~~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 414 (535)
T 2h8h_A 341 EYMSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 414 (535)
T ss_dssp CCCTTEEHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCC
T ss_pred ehhcCCcHHHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcccccceecC
Confidence 99999999999965432 247899999999999999999996 899999999999999999999999999998654
Q ss_pred CCCCcccccccccCCccccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.. .........++..|+|||++.+.
T Consensus 415 ~~-~~~~~~~~~~~~~y~aPE~~~~~ 439 (535)
T 2h8h_A 415 DN-EYTARQGAKFPIKWTAPEAALYG 439 (535)
T ss_dssp CH-HHHTTCSTTSCGGGSCHHHHHHC
T ss_pred CC-ceecccCCcCcccccCHHHhccC
Confidence 32 11112334577899999988653
No 275
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.93 E-value=3.4e-26 Score=238.38 Aligned_cols=175 Identities=25% Similarity=0.421 Sum_probs=142.9
Q ss_pred hcCCcccceecccccEEEEEEEEcC----CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHD----GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERL 664 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 664 (779)
.++|++.+.||+|+||.||+|+... +..||+|.+.... .....+++.+|++++++++||||+++++++.+ +..+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~ 88 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC-TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW 88 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS-CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc-CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence 4679999999999999999997642 3469999987653 34456789999999999999999999999765 4568
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
+||||+++++|.+++.... ..+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++
T Consensus 89 ~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 161 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNK----NSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFGLSR 161 (281)
T ss_dssp EEEECCTTCBHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECCCCGGG
T ss_pred EEEecCCCCCHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCccCCCc
Confidence 9999999999999986543 257899999999999999999996 899999999999999999999999999998
Q ss_pred ecCCCCCcccccccccCCccccccccccc
Q 004020 745 LAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 745 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
....... .......+|+.|+|||++.+.
T Consensus 162 ~~~~~~~-~~~~~~~~~~~y~aPE~~~~~ 189 (281)
T 3cc6_A 162 YIEDEDY-YKASVTRLPIKWMSPESINFR 189 (281)
T ss_dssp CC----------CCCCCGGGCCHHHHHHC
T ss_pred ccccccc-cccccCCCCcceeCchhhccC
Confidence 6644321 122334578899999998644
No 276
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.93 E-value=3.3e-26 Score=240.61 Aligned_cols=175 Identities=28% Similarity=0.428 Sum_probs=144.2
Q ss_pred CCcccceecccccEEEEEEEEcC----CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE-EE
Q 004020 591 NFSEENVLGRGGFGTVYKGELHD----GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER-LL 665 (779)
Q Consensus 591 ~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-~l 665 (779)
.|...+.||+|+||.||+|+..+ +..||+|++.... .....+.+.+|++++++++||||+++++++.+.+.. ++
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 100 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT-EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHV 100 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc-cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEE
Confidence 45667999999999999997542 2379999987533 345567899999999999999999999999877665 99
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||||+.+++|.+++.... ..+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++.
T Consensus 101 v~e~~~~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~ 173 (298)
T 3pls_A 101 LLPYMCHGDLLQFIRSPQ----RNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGLARD 173 (298)
T ss_dssp EECCCTTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTSSCT
T ss_pred EEecccCCCHHHHHhccc----cCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCCccc
Confidence 999999999999986532 357899999999999999999996 7999999999999999999999999999986
Q ss_pred cCCCCC--cccccccccCCccccccccccc
Q 004020 746 APDNGK--HSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 746 ~~~~~~--~~~~~~~~gt~~y~APE~l~~~ 773 (779)
...... ........+|+.|+|||++.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 203 (298)
T 3pls_A 174 ILDREYYSVQQHRHARLPVKWTALESLQTY 203 (298)
T ss_dssp TTTGGGGCSCCSSCTTCGGGGSCHHHHTTC
T ss_pred ccCCcccccccCcCCCCCccccChhhhccC
Confidence 543221 1122345688999999998754
No 277
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.93 E-value=4.1e-26 Score=243.31 Aligned_cols=177 Identities=36% Similarity=0.558 Sum_probs=142.7
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEE--EEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKI--AVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~v--avK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l 665 (779)
++|++.+.||+|+||.||+|+.. ++..+ |+|.+.... .....+.+.+|+++++++ +||||+++++++.+.+..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l 103 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA-SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeecccc-chHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence 57999999999999999999765 56544 899886432 234456789999999999 89999999999999999999
Q ss_pred EEEecCCCChhhHhhhccc-----------CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc
Q 004020 666 VYEYMPQGTLSRHLFNRKE-----------EGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR 734 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~-----------~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~ 734 (779)
||||+++++|.+++..... .....+++..++.++.||+.||+|||+ ++|+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccceEEEcCCCe
Confidence 9999999999999966431 112368999999999999999999996 89999999999999999999
Q ss_pred EEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 735 AKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 735 ~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+||+|||+++..... .......+++.|+|||++.+.
T Consensus 181 ~kL~Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~ 216 (327)
T 1fvr_A 181 AKIADFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYS 216 (327)
T ss_dssp EEECCTTCEESSCEE---CCC----CCTTTCCHHHHHHC
T ss_pred EEEcccCcCcccccc---ccccCCCCCccccChhhhccc
Confidence 999999998743221 112234578899999988654
No 278
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.3e-26 Score=245.20 Aligned_cols=177 Identities=30% Similarity=0.454 Sum_probs=143.9
Q ss_pred HHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEe---
Q 004020 585 LRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLD--- 659 (779)
Q Consensus 585 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~--- 659 (779)
+....++|++.+.||+|+||.||+|+.. +++.||+|++.... ...+.+.+|+.+++++ +||||+++++++..
T Consensus 19 l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 19 LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred ccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc---ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 3445778999999999999999999874 78999999986543 2346788999999999 79999999999987
Q ss_pred ---CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEE
Q 004020 660 ---GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAK 736 (779)
Q Consensus 660 ---~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~k 736 (779)
.+..++||||+++++|.+++..... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++.++.+|
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~k 169 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTKG---NTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVK 169 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSGG---GCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEE
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCCCCEE
Confidence 4678999999999999999976432 257899999999999999999996 8999999999999999999999
Q ss_pred EEeeccceecCCCCCcccccccccCCcccccccccc
Q 004020 737 VADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 737 l~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
|+|||+++...... .......||+.|+|||++.+
T Consensus 170 l~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~ 203 (326)
T 2x7f_A 170 LVDFGVSAQLDRTV--GRRNTFIGTPYWMAPEVIAC 203 (326)
T ss_dssp ECCCTTTC---------------CCGGGCCHHHHC-
T ss_pred EeeCcCceecCcCc--cccccccCCccccChhhhcc
Confidence 99999987654321 11234569999999999863
No 279
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.93 E-value=3.2e-26 Score=242.57 Aligned_cols=175 Identities=22% Similarity=0.348 Sum_probs=144.8
Q ss_pred hhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC--CCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR--HRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~~~~l 665 (779)
..++|++.+.||+|+||.||+|...+++.||+|++..........+.+.+|++++++++ ||||+++++++...+..++
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 45679999999999999999999888999999999766555666788999999999997 5999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
||| +.+++|.+++.... .+++..++.++.||++||+|||+ .+|+||||||+||++++ +.+||+|||+++.
T Consensus 106 v~e-~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~ 175 (313)
T 3cek_A 106 VME-CGNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD-GMLKLIDFGIANQ 175 (313)
T ss_dssp EEC-CCSEEHHHHHHHCS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET-TEEEECCCSSSCC
T ss_pred EEe-cCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC-CeEEEeecccccc
Confidence 999 56789999986542 57899999999999999999996 79999999999999965 8999999999987
Q ss_pred cCCCCCcccccccccCCcccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
..............||+.|+|||++.+
T Consensus 176 ~~~~~~~~~~~~~~gt~~y~aPE~~~~ 202 (313)
T 3cek_A 176 MQPDTTSVVKDSQVGTVNYMPPEAIKD 202 (313)
T ss_dssp --------------CCGGGCCHHHHTT
T ss_pred ccCccccccccCCCCCCCcCCHHHHhh
Confidence 654332222334579999999999875
No 280
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.93 E-value=8.8e-26 Score=236.94 Aligned_cols=174 Identities=25% Similarity=0.401 Sum_probs=144.3
Q ss_pred CCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEEe
Q 004020 591 NFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYEY 669 (779)
Q Consensus 591 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 669 (779)
+|.....||+|+||.||+|+.. +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 100 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD--SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ 100 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC--C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc--hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEe
Confidence 4555679999999999999864 68899999987543 33456789999999999999999999999999999999999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC-CCcEEEEeeccceecCC
Q 004020 670 MPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD-DMRAKVADFGLVRLAPD 748 (779)
Q Consensus 670 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~-~~~~kl~DFG~a~~~~~ 748 (779)
+++++|.+++..... ...+++..+..++.||+.||+|||+ .+|+||||||+||+++. ++.+||+|||+++....
T Consensus 101 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~ 175 (295)
T 2clq_A 101 VPGGSLSALLRSKWG--PLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG 175 (295)
T ss_dssp CSEEEHHHHHHHTTC--CCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC
T ss_pred CCCCCHHHHHHhhcc--CCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeecccccccCC
Confidence 999999999865432 2346788899999999999999996 89999999999999987 89999999999987654
Q ss_pred CCCcccccccccCCccccccccccc
Q 004020 749 NGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 749 ~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.. .......||+.|+|||++.+.
T Consensus 176 ~~--~~~~~~~~~~~y~aPE~~~~~ 198 (295)
T 2clq_A 176 IN--PCTETFTGTLQYMAPEIIDKG 198 (295)
T ss_dssp -------CCCCCCGGGCCHHHHHHG
T ss_pred CC--CcccccCCCccccChhhhcCC
Confidence 21 112345799999999998654
No 281
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.93 E-value=6.5e-26 Score=244.54 Aligned_cols=178 Identities=27% Similarity=0.422 Sum_probs=146.1
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC-----C
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG-----N 661 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~ 661 (779)
+.++|++.+.||+|+||.||+|+.. +++.||||++.... ......++.+|++++++++||||+++++++... .
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD-KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc-cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 4578999999999999999999876 68999999986432 344556788999999999999999999988754 6
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
..++||||++ ++|.+++... .+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||+|||
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~~------~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg 157 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVISTQ------MLSDDHIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFG 157 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCT
T ss_pred eEEEEEeccC-ccHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEEecc
Confidence 7899999997 6898888542 48899999999999999999997 899999999999999999999999999
Q ss_pred cceecCCCCCcc--------cccccccCCcccccccccccCCC
Q 004020 742 LVRLAPDNGKHS--------IETRLAGTFGYLAPEYAAETSGM 776 (779)
Q Consensus 742 ~a~~~~~~~~~~--------~~~~~~gt~~y~APE~l~~~~~~ 776 (779)
+++......... ......||+.|+|||++.+...+
T Consensus 158 ~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~ 200 (353)
T 2b9h_A 158 LARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKY 200 (353)
T ss_dssp TCEECC----------------CCCCCCGGGCCHHHHHSCCCC
T ss_pred cccccccccccccCccccccchhhccccccccCCeeeccCCCc
Confidence 998765322111 12235789999999988654443
No 282
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=253.88 Aligned_cols=182 Identities=29% Similarity=0.413 Sum_probs=132.9
Q ss_pred hhcCCcc-cceecccccEEEEEEEEc---CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe--CC
Q 004020 588 VTNNFSE-ENVLGRGGFGTVYKGELH---DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD--GN 661 (779)
Q Consensus 588 ~~~~~~~-~~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~--~~ 661 (779)
+.+.|++ .++||+|+||.||+|+.. +++.||+|++..... ...+.+|++++++++||||+++++++.. ..
T Consensus 18 ~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~ 93 (405)
T 3rgf_A 18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI----SMSACREIALLRELKHPNVISLQKVFLSHADR 93 (405)
T ss_dssp HHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC----CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTT
T ss_pred hhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC----CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCC
Confidence 3455666 458999999999999865 578999999975432 2457899999999999999999999965 66
Q ss_pred eEEEEEEecCCCChhhHhhhcccC----CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE----cCCC
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEE----GLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL----GDDM 733 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~----~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll----~~~~ 733 (779)
..++||||++ ++|.+++...... ....+++..++.|+.||+.||+|||+ .+|+||||||+|||+ +.++
T Consensus 94 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~~ 169 (405)
T 3rgf_A 94 KVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERG 169 (405)
T ss_dssp EEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTTT
T ss_pred eEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCCC
Confidence 8899999997 5788777543321 12248899999999999999999997 899999999999999 6778
Q ss_pred cEEEEeeccceecCCCCCc-ccccccccCCcccccccccccCCCC
Q 004020 734 RAKVADFGLVRLAPDNGKH-SIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 734 ~~kl~DFG~a~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
.+||+|||+|+........ ......+||+.|+|||++.+...++
T Consensus 170 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ 214 (405)
T 3rgf_A 170 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYT 214 (405)
T ss_dssp CEEECCTTCCC----------------CCCTTCCHHHHTTCCSCC
T ss_pred cEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCccc
Confidence 9999999999876542211 1223467999999999998755444
No 283
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.93 E-value=4.8e-26 Score=245.52 Aligned_cols=174 Identities=25% Similarity=0.404 Sum_probs=145.0
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe----
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE---- 662 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~---- 662 (779)
+.++|.+.+.||+|+||.||+|+.. +|+.||||++..........+++.+|+.+++.++||||+++++++...+.
T Consensus 22 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 101 (353)
T 3coi_A 22 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 101 (353)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred cCceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence 3468999999999999999999875 68999999997765555566789999999999999999999999987654
Q ss_pred --EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEee
Q 004020 663 --RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADF 740 (779)
Q Consensus 663 --~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DF 740 (779)
.++||||++ ++|.+++. ..+++..+..++.||+.||+|||+ ++|+||||||+||+++.++.+||+||
T Consensus 102 ~~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Df 170 (353)
T 3coi_A 102 YDFYLVMPFMQ-TDLQKIMG-------LKFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDF 170 (353)
T ss_dssp CCCEEEEECCS-EEGGGTTT-------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEECST
T ss_pred eeEEEEecccc-CCHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEeec
Confidence 499999997 58877762 147899999999999999999996 89999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 741 GLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 741 G~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
|+++..... .....||+.|+|||++.+...++
T Consensus 171 g~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~ 202 (353)
T 3coi_A 171 GLARHADAE-----MTGYVVTRWYRAPEVILSWMHYN 202 (353)
T ss_dssp TCTTC-------------CCSBCCSCHHHHSCCSCCC
T ss_pred ccccCCCCC-----ccccccCcCcCCHHHHhCcCCCC
Confidence 998765332 23457899999999987754443
No 284
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.93 E-value=3.3e-26 Score=264.40 Aligned_cols=169 Identities=27% Similarity=0.407 Sum_probs=138.8
Q ss_pred ceecccccEEEEEEEEc---CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEEEecCC
Q 004020 596 NVLGRGGFGTVYKGELH---DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVYEYMPQ 672 (779)
Q Consensus 596 ~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 672 (779)
+.||+|+||.||+|.+. +++.||||+++.........+++.+|++++++++||||+++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 57999999999999653 46789999998765555567889999999999999999999999864 568899999999
Q ss_pred CChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecCCCCCc
Q 004020 673 GTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDNGKH 752 (779)
Q Consensus 673 gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~ 752 (779)
|+|.+++.... .+++..++.|+.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++........
T Consensus 454 g~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~ 525 (635)
T 4fl3_A 454 GPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 525 (635)
T ss_dssp EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----
T ss_pred CCHHHHHhhCC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc
Confidence 99999996432 58899999999999999999997 89999999999999999999999999999876543221
Q ss_pred -ccccccccCCccccccccccc
Q 004020 753 -SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 753 -~~~~~~~gt~~y~APE~l~~~ 773 (779)
.......||+.|+|||++.+.
T Consensus 526 ~~~~~~~~~t~~y~APE~~~~~ 547 (635)
T 4fl3_A 526 YKAQTHGKWPVKWYAPECINYY 547 (635)
T ss_dssp ---------CGGGSCHHHHHHC
T ss_pred cccccCCCCceeeeChhhhcCC
Confidence 222334578899999998654
No 285
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=99.93 E-value=2.3e-26 Score=247.08 Aligned_cols=176 Identities=20% Similarity=0.262 Sum_probs=139.0
Q ss_pred hcCCcccceecccccEEEEEEEEc----CCcEEEEEEecccccCh---------hHHHHHHHHHHHHHcCCCCccceEee
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH----DGTKIAVKRMESAVVSE---------KGFAEFKSEIAVLTKVRHRHLVGLLG 655 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~---------~~~~~~~~E~~~l~~l~h~niv~~~~ 655 (779)
.++|++.+.||+|+||.||+|+.. ++..||+|++....... .....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367999999999999999999875 57889999986543111 01134678899999999999999999
Q ss_pred EEEe----CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC
Q 004020 656 YCLD----GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD 731 (779)
Q Consensus 656 ~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~ 731 (779)
++.. ....++||||+ +++|.+++.... .+++..++.++.||+.||+|||+ .+|+||||||+||+++.
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~ 186 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-----TFKKSTVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLGY 186 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-----BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEES
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEcc
Confidence 9988 67889999999 999999986543 58999999999999999999997 79999999999999998
Q ss_pred CC--cEEEEeeccceecCCCCCc-----ccccccccCCccccccccccc
Q 004020 732 DM--RAKVADFGLVRLAPDNGKH-----SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 732 ~~--~~kl~DFG~a~~~~~~~~~-----~~~~~~~gt~~y~APE~l~~~ 773 (779)
++ .+||+|||+++........ .......||+.|+|||++.+.
T Consensus 187 ~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 235 (345)
T 2v62_A 187 KNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGV 235 (345)
T ss_dssp SSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTC
T ss_pred CCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCC
Confidence 77 9999999999876432211 112345799999999998765
No 286
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2e-25 Score=231.89 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=134.7
Q ss_pred EEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 67 VTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 67 v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
+++|++++|++++..+..|..+++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 5555555555554444455555555555555555555444 455555555555555555555555555555555555555
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEee-cCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCC
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITGT-IPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDS 224 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~ 224 (779)
|++.+ ..+..+..+++|+.|++++|.+++. +|..+. .+++|++|+|++|++++..+..
T Consensus 110 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~--~l~~L~~L~Ls~N~l~~~~~~~------------------ 168 (276)
T 2z62_A 110 TNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTD------------------ 168 (276)
T ss_dssp SCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCSSCCCEECGGG------------------
T ss_pred CCccc-cCchhcccCCCCCEEECcCCccceecCchhhc--cCCCCCEEECCCCCCCcCCHHH------------------
Confidence 55544 2333455555555555555555542 355544 4555555555555555433333
Q ss_pred CCCCchhhhcCCCCcc-EEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCC
Q 004020 225 KLNGSVAVIQNMTSLT-QLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPK 302 (779)
Q Consensus 225 ~~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 302 (779)
+..+..++.|. .|+|++|.+++.++......+|+.|++++|++++..+..+..+++|+.|+|++|++++..|.
T Consensus 169 -----~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 169 -----LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp -----GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred -----hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 33344555555 89999999999888766667999999999999987777789999999999999999987664
No 287
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.93 E-value=4.4e-26 Score=262.72 Aligned_cols=174 Identities=24% Similarity=0.429 Sum_probs=139.1
Q ss_pred CCcccc-eecccccEEEEEEEEc---CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 591 NFSEEN-VLGRGGFGTVYKGELH---DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 591 ~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
++.+.+ .||+|+||.||+|.+. ++..||||+++... .....+++.+|++++++++||||+++++++.. +..++|
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv 413 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT-EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV 413 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCC-SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEE
Confidence 344444 7999999999999764 46679999997653 33456789999999999999999999999976 568999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++|+|.+++.... ..+++..+..++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++..
T Consensus 414 ~E~~~~g~L~~~l~~~~----~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~ 486 (613)
T 2ozo_A 414 MEMAGGGPLHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKAL 486 (613)
T ss_dssp EECCTTCBHHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTTC
T ss_pred EEeCCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCcccc
Confidence 99999999999985432 358999999999999999999997 89999999999999999999999999999876
Q ss_pred CCCCCc-ccccccccCCccccccccccc
Q 004020 747 PDNGKH-SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 747 ~~~~~~-~~~~~~~gt~~y~APE~l~~~ 773 (779)
...... .......+++.|+|||++.+.
T Consensus 487 ~~~~~~~~~~~~~~~~~~y~APE~~~~~ 514 (613)
T 2ozo_A 487 GADDSYYTARSAGKWPLKWYAPECINFR 514 (613)
T ss_dssp C--------------CCTTSCHHHHHHC
T ss_pred cCCCceeeeccCCCCccceeCHhhhcCC
Confidence 433211 111223467899999998653
No 288
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.7e-25 Score=253.41 Aligned_cols=248 Identities=24% Similarity=0.293 Sum_probs=209.9
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.+++.|+|++|+|+ .+|. .+++|++|+|++|+|+++++ .+++|++|+|++|+++.+|. .+++|++|+|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECC
Confidence 47999999999999 5666 67999999999999997655 78999999999999999987 57899999999
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDS 224 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~ 224 (779)
+|+|.. +|.. +++|++|++++|++++ +|.. +++|+.|+|++|+|++ +|.. ..+|+.|++++|.+..
T Consensus 130 ~N~l~~--lp~~---l~~L~~L~Ls~N~l~~-l~~~-----~~~L~~L~L~~N~l~~-l~~~--~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 130 GNQLTS--LPVL---PPGLQELSVSDNQLAS-LPAL-----PSELCKLWAYNNQLTS-LPML--PSGLQELSVSDNQLAS 195 (622)
T ss_dssp SSCCSC--CCCC---CTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSC
T ss_pred CCCCCc--CCCC---CCCCCEEECcCCcCCC-cCCc-----cCCCCEEECCCCCCCC-Cccc--CCCCcEEECCCCCCCC
Confidence 999986 5554 4899999999999985 5543 5689999999999995 6632 2679999999999876
Q ss_pred CCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCC
Q 004020 225 KLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFN 304 (779)
Q Consensus 225 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 304 (779)
... .+++|+.|++++|.++..++. +++|+.|++++|+|++ +| ..+++|+.|+|++|+|++. |.
T Consensus 196 l~~-------~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~-- 258 (622)
T 3g06_A 196 LPT-------LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM-- 258 (622)
T ss_dssp CCC-------CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC--
T ss_pred CCC-------ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc--
Confidence 332 358899999999999965532 4889999999999996 66 5668999999999999843 32
Q ss_pred CCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccc
Q 004020 305 SPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSG 384 (779)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g 384 (779)
..++|+.|+|++|+|+
T Consensus 259 ---------------------------------------------------------------~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 259 ---------------------------------------------------------------LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp ---------------------------------------------------------------CCTTCCEEECCSSCCC-
T ss_pred ---------------------------------------------------------------ccccCcEEeCCCCCCC-
Confidence 1137999999999999
Q ss_pred cccccccccccCCeEeccCccccccCCccCCCCC
Q 004020 385 TISSNFSRLTSLRQLMLSGNELTGTIPKELTTLP 418 (779)
Q Consensus 385 ~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 418 (779)
.+|..|.++++|+.|+|++|.|+|.+|..+..++
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 7899999999999999999999999998776655
No 289
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.93 E-value=8.3e-26 Score=241.90 Aligned_cols=174 Identities=29% Similarity=0.366 Sum_probs=130.2
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEEe--------
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCLD-------- 659 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~-------- 659 (779)
.+|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.+++++. ||||+++++++..
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE--EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS--HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCc--hHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 47899999999999999999865 78999999985442 445577899999999996 9999999999953
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC--cEEcCCCCCCEEEcCCCcEEE
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQS--FIHRDLKPSNILLGDDMRAKV 737 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~--ivHrDlkp~NIll~~~~~~kl 737 (779)
....++||||+. |+|.+++...... ..+++..++.++.||+.||+|||+ .+ |+||||||+||+++.++.+||
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~~~ivH~Dikp~NIl~~~~~~~kl 179 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKMESR--GPLSCDTVLKIFYQTCRAVQHMHR---QKPPIIHRDLKVENLLLSNQGTIKL 179 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCCCCCGGGCEECTTSCEEB
T ss_pred CceEEEEEEecC-CCHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCCCEEEccCCcccEEECCCCCEEE
Confidence 334789999996 7999988654322 258999999999999999999996 67 999999999999999999999
Q ss_pred EeeccceecCCCCCcc----------cccccccCCccccccccc
Q 004020 738 ADFGLVRLAPDNGKHS----------IETRLAGTFGYLAPEYAA 771 (779)
Q Consensus 738 ~DFG~a~~~~~~~~~~----------~~~~~~gt~~y~APE~l~ 771 (779)
+|||+++......... ......||+.|+|||++.
T Consensus 180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~ 223 (337)
T 3ll6_A 180 CDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIID 223 (337)
T ss_dssp CCCTTCBCCSSCC-------------------------------
T ss_pred ecCccceeccccCcccccccccccchhhccccCCCCcCChhhhh
Confidence 9999998765432211 111346899999999985
No 290
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=99.93 E-value=1.5e-25 Score=247.61 Aligned_cols=172 Identities=24% Similarity=0.306 Sum_probs=145.3
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcC------CCCccceEeeEEEeC
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV------RHRHLVGLLGYCLDG 660 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~ 660 (779)
+..+|++.+.||+|+||.||+|... +++.||||++... .....++.+|+++++.+ .|+||+++++++...
T Consensus 95 ~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 171 (429)
T 3kvw_A 95 VAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE---KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR 171 (429)
T ss_dssp ETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred ccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc---cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence 4568999999999999999999765 5899999998753 33445677888888877 577999999999999
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc--EEEE
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR--AKVA 738 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~--~kl~ 738 (779)
+..++||||+. ++|.+++..... ..+++..+..++.||+.||+|||+ .+|+||||||+|||++.++. +||+
T Consensus 172 ~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vkL~ 244 (429)
T 3kvw_A 172 NHICMTFELLS-MNLYELIKKNKF---QGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKVI 244 (429)
T ss_dssp TEEEEEECCCC-CBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEEEC
T ss_pred CeEEEEEeccC-CCHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceEEe
Confidence 99999999996 689988865432 248999999999999999999996 79999999999999999887 9999
Q ss_pred eeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
|||+++..... ....+||+.|+|||++.+..
T Consensus 245 DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~ 275 (429)
T 3kvw_A 245 DFGSSCYEHQR-----VYTYIQSRFYRAPEVILGAR 275 (429)
T ss_dssp CCTTCEETTCC-----CCSSCSCGGGCCHHHHHTBC
T ss_pred ecccceecCCc-----ccccCCCCCccChHHHhCCC
Confidence 99999765432 23457999999999987653
No 291
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.93 E-value=8.2e-26 Score=240.86 Aligned_cols=177 Identities=29% Similarity=0.427 Sum_probs=144.6
Q ss_pred hhcCCcccceecccccEEEEEEEE--cCCcEEEEEEecccccChhHHHHHHHHHHHHHcC---CCCccceEeeEEE----
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL--HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV---RHRHLVGLLGYCL---- 658 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~~~~~~~---- 658 (779)
..++|++.+.||+|+||.||+|+. .+++.||+|++............+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999987 3688999999875543332233566777777666 8999999999987
Q ss_pred -eCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEE
Q 004020 659 -DGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKV 737 (779)
Q Consensus 659 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl 737 (779)
.....++||||++ |+|.+++..... ..+++..+..++.||+.||+|||+ .+|+||||||+||+++.++.+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~~~kl 161 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPE---PGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKL 161 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCT---TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEE
T ss_pred CCCceEEEEEecCC-CCHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCCCEEE
Confidence 4567899999998 699999865432 248899999999999999999996 89999999999999999999999
Q ss_pred EeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 738 ADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 738 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
+|||+++..... .......||+.|+|||++.+..
T Consensus 162 ~Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~ 195 (326)
T 1blx_A 162 ADFGLARIYSFQ---MALTSVVVTLWYRAPEVLLQSS 195 (326)
T ss_dssp CSCCSCCCCCGG---GGGCCCCCCCTTCCHHHHTTCC
T ss_pred ecCcccccccCC---CCccccccccceeCHHHHhcCC
Confidence 999998765432 1234457899999999987643
No 292
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=238.70 Aligned_cols=178 Identities=24% Similarity=0.396 Sum_probs=139.4
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEE--------
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCL-------- 658 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-------- 658 (779)
+.++|++.+.||+|+||.||+|... +++.||+|++... .....+++.+|++++++++||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 86 (320)
T 2i6l_A 9 LGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD 86 (320)
T ss_dssp ETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred cCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC--ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence 4578999999999999999999876 5899999998654 3455678999999999999999999999874
Q ss_pred ------eCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEc-C
Q 004020 659 ------DGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLG-D 731 (779)
Q Consensus 659 ------~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~-~ 731 (779)
..+..++||||++ |+|.+++.. ..+++..++.++.|++.||+|||+ ++|+||||||+||+++ +
T Consensus 87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~ 156 (320)
T 2i6l_A 87 DVGSLTELNSVYIVQEYME-TDLANVLEQ------GPLLEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFINTE 156 (320)
T ss_dssp ----CCSCSEEEEEEECCS-EEHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETT
T ss_pred ccccccccCceeEEeeccC-CCHHHHhhc------CCccHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCC
Confidence 3467899999997 699998843 247899999999999999999996 8999999999999997 5
Q ss_pred CCcEEEEeeccceecCCCCC-cccccccccCCcccccccccccCCCC
Q 004020 732 DMRAKVADFGLVRLAPDNGK-HSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 732 ~~~~kl~DFG~a~~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
++.+||+|||+++....... ........||+.|+|||++.+...++
T Consensus 157 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~ 203 (320)
T 2i6l_A 157 DLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYT 203 (320)
T ss_dssp TTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCC
T ss_pred CCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCC
Confidence 67999999999987643211 11123346799999999987644433
No 293
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.93 E-value=8.1e-26 Score=264.77 Aligned_cols=167 Identities=24% Similarity=0.397 Sum_probs=142.6
Q ss_pred hcCCcccceecccccEEEEEEEEc--CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCe----
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH--DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNE---- 662 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~---- 662 (779)
.++|++.+.||+|+||.||+|.+. +++.||||++.... .......+.+|++++++++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 157 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG-DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP 157 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC-CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC-CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence 478999999999999999999875 58999999986532 34455678999999999999999999999987665
Q ss_pred -EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 663 -RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 663 -~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
.|+||||+++++|.+++.. .+++.+++.|+.||+.||+|||+ ++|+||||||+||+++.+ .+||+|||
T Consensus 158 ~~~lv~E~~~g~~L~~~~~~-------~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl~DFG 226 (681)
T 2pzi_A 158 VGYIVMEYVGGQSLKRSKGQ-------KLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLIDLG 226 (681)
T ss_dssp EEEEEEECCCCEECC----C-------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEECCCT
T ss_pred eeEEEEEeCCCCcHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEEEecc
Confidence 6999999999999887632 48899999999999999999997 899999999999999875 89999999
Q ss_pred cceecCCCCCcccccccccCCccccccccccc
Q 004020 742 LVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 742 ~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+++..... ....||+.|+|||++.+.
T Consensus 227 ~a~~~~~~------~~~~gt~~y~aPE~~~~~ 252 (681)
T 2pzi_A 227 AVSRINSF------GYLYGTPGFQAPEIVRTG 252 (681)
T ss_dssp TCEETTCC------SCCCCCTTTSCTTHHHHC
T ss_pred cchhcccC------CccCCCccccCHHHHcCC
Confidence 99876543 335699999999998754
No 294
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.93 E-value=8.2e-26 Score=244.45 Aligned_cols=186 Identities=25% Similarity=0.306 Sum_probs=136.7
Q ss_pred HHHHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCC
Q 004020 583 QVLRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGN 661 (779)
Q Consensus 583 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 661 (779)
.......++|++.+.||+|+||.||+|+.. +++.||||++.... ....++.+|++.++.++||||+++++++...+
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~ 92 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP---RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLG 92 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT---TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEEC
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc---cccHHHHHHHHHHHhcCCCCcccHHHhhhccc
Confidence 345566789999999999999999999875 68999999885432 22235667888889999999999999997644
Q ss_pred e-------EEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC-CC
Q 004020 662 E-------RLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD-DM 733 (779)
Q Consensus 662 ~-------~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~-~~ 733 (779)
. .++||||+++ ++.+.+..... ....+++..+..++.|++.||.|||.. ..+|+||||||+||+++. ++
T Consensus 93 ~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~ 169 (360)
T 3e3p_A 93 ERDRRDIYLNVVMEYVPD-TLHRCCRNYYR-RQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADG 169 (360)
T ss_dssp SSCTTCEEEEEEEECCSC-BHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTT
T ss_pred cccccceeEEEEeecccc-cHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCC
Confidence 3 7899999986 55554433222 223578899999999999999999921 289999999999999996 89
Q ss_pred cEEEEeeccceecCCCCCcccccccccCCcccccccccccCCCC
Q 004020 734 RAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSGMT 777 (779)
Q Consensus 734 ~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~t 777 (779)
.+||+|||+++....... .....||+.|+|||++.+...++
T Consensus 170 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~ 210 (360)
T 3e3p_A 170 TLKLCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYT 210 (360)
T ss_dssp EEEECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCC
T ss_pred cEEEeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCC
Confidence 999999999987654322 23457899999999997765444
No 295
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.93 E-value=7.7e-26 Score=245.59 Aligned_cols=170 Identities=11% Similarity=0.072 Sum_probs=126.6
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcC--CCCccceEe-------eEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKV--RHRHLVGLL-------GYCL 658 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l--~h~niv~~~-------~~~~ 658 (779)
.+|++.+.||+|+||.||+|+.. +++.||+|++..... .....+.+.+|+.+++.+ +||||++++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 45889999999999999999865 789999999987553 234456677885544444 699988755 4554
Q ss_pred eC-----------------CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHH------HHHHHHHHHHHHHHHcCCCC
Q 004020 659 DG-----------------NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRR------LTIALDVARGVEYLHGLAHQ 715 (779)
Q Consensus 659 ~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~------~~i~~qi~~~L~~LH~~~~~ 715 (779)
.. ...|+||||++ |+|.+++..... .+++..+ ..++.||+.||+|||+ +
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~----~~~~~~~~~~~vk~~i~~qi~~aL~~LH~---~ 213 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF----VYVFRGDEGILALHILTAQLIRLAANLQS---K 213 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH----SCCCCHHHHHHHHHHHHHHHHHHHHHHHH---T
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc----ccchhhhhhhhhHHHHHHHHHHHHHHHHH---C
Confidence 33 23799999998 899999976532 2344445 6788999999999996 8
Q ss_pred CcEEcCCCCCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCcccccccccc
Q 004020 716 SFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 716 ~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
+|+||||||+|||++.++.+||+|||+|+..... .....+|+.|+|||++.+
T Consensus 214 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~ 265 (371)
T 3q60_A 214 GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNA 265 (371)
T ss_dssp TEEETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTC
T ss_pred CCccCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccC
Confidence 9999999999999999999999999999876432 113457799999999975
No 296
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.93 E-value=5.2e-26 Score=236.57 Aligned_cols=169 Identities=35% Similarity=0.545 Sum_probs=137.3
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeC-CeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDG-NERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. ++.||+|++.... ..+.+.+|++++++++||||+++++++... +..++||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~ 94 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 94 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEE
Confidence 467999999999999999999875 8899999987542 446789999999999999999999997655 4689999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++++|.+++..... ..+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++...
T Consensus 95 e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~ 168 (278)
T 1byg_A 95 EYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 168 (278)
T ss_dssp CCCTTEEHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred ecCCCCCHHHHHHhccc---ccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcEEEeecccccccc
Confidence 99999999999865432 137889999999999999999996 899999999999999999999999999987654
Q ss_pred CCCCcccccccccCCccccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
... ....+++.|+|||++.+.
T Consensus 169 ~~~-----~~~~~~~~y~aPE~~~~~ 189 (278)
T 1byg_A 169 STQ-----DTGKLPVKWTAPEALREK 189 (278)
T ss_dssp ------------CCTTTSCHHHHHHC
T ss_pred ccc-----cCCCccccccCHHHhCCC
Confidence 321 223578999999998654
No 297
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=246.26 Aligned_cols=171 Identities=16% Similarity=0.286 Sum_probs=141.9
Q ss_pred hcCCcccceecccccEEEEEEEEcC---------CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccce-------
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHD---------GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVG------- 652 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------- 652 (779)
.++|++.+.||+|+||.||+|+... ++.||+|++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------~~~~~E~~~l~~l~h~niv~~~~~~~~ 113 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------GRLFNEQNFFQRAAKPLQVNKWKKLYS 113 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-------STHHHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-------chHHHHHHHHHHhcccchhhhhhhhcc
Confidence 3689999999999999999998763 789999998643 35789999999999999987
Q ss_pred --------EeeEEEe-CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCC
Q 004020 653 --------LLGYCLD-GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLK 723 (779)
Q Consensus 653 --------~~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlk 723 (779)
+++++.. .+..++||||+ +++|.+++..... ..+++..++.++.||+.||+|||+ ++|+|||||
T Consensus 114 ~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dik 186 (352)
T 2jii_A 114 TPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK---HVLSERSVLQVACRLLDALEFLHE---NEYVHGNVT 186 (352)
T ss_dssp CTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG---GCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCC
T ss_pred CCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCc---CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCC
Confidence 6777776 67889999999 9999999976422 258999999999999999999997 799999999
Q ss_pred CCCEEEcCCC--cEEEEeeccceecCCCCCc-----ccccccccCCccccccccccc
Q 004020 724 PSNILLGDDM--RAKVADFGLVRLAPDNGKH-----SIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 724 p~NIll~~~~--~~kl~DFG~a~~~~~~~~~-----~~~~~~~gt~~y~APE~l~~~ 773 (779)
|+||+++.++ .+||+|||+++........ .......||+.|+|||++.+.
T Consensus 187 p~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 243 (352)
T 2jii_A 187 AENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGC 243 (352)
T ss_dssp GGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTC
T ss_pred HHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccC
Confidence 9999999998 8999999999866432211 112334799999999998764
No 298
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.93 E-value=9.4e-26 Score=236.22 Aligned_cols=177 Identities=32% Similarity=0.521 Sum_probs=137.0
Q ss_pred hcCCcccceecccccEEEEEEEEc--CCc--EEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH--DGT--KIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~--~~~--~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
.++|++.+.||+|+||.||+|++. +++ .||+|+++..... ....+++.+|++++++++||||+++++++.... .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 357999999999999999999753 233 6899998765422 345678999999999999999999999998765 8
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
++||||+++++|.+++.... ..+++..+..++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||++
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~ 168 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQ----GHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLM 168 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred eeeEecccCCCHHHHHHhcc----CCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEcccccc
Confidence 89999999999999987643 257899999999999999999996 89999999999999999999999999999
Q ss_pred eecCCCCCcc-cccccccCCccccccccccc
Q 004020 744 RLAPDNGKHS-IETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~ 773 (779)
+......... ......+|+.|+|||++.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~ 199 (291)
T 1u46_A 169 RALPQNDDHYVMQEHRKVPFAWCAPESLKTR 199 (291)
T ss_dssp EECCC-CCEEEC-----CCGGGCCHHHHHHC
T ss_pred ccccccccchhhhccCCCCceeeCchhhcCC
Confidence 8775543221 22334678899999998653
No 299
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.93 E-value=1.3e-25 Score=239.57 Aligned_cols=175 Identities=27% Similarity=0.361 Sum_probs=128.0
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHH-HHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIA-VLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
.++|++.+.||+|+||.||+|... +++.||+|++.... ......++.+|+. +++.++||||+++++++...+..++|
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv 99 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV-DEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWIC 99 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC-CHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc-CchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEE
Confidence 368899999999999999999875 78999999997653 2334455566666 77778999999999999999999999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-CcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQ-SFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~-~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
|||+++ +|.+++..........+++..+..++.|++.||.|||+ . +|+||||||+||+++.++.+||+|||+++.
T Consensus 100 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 175 (327)
T 3aln_A 100 MELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLCDFGISGQ 175 (327)
T ss_dssp ECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred EeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence 999985 88877754332223468999999999999999999996 6 999999999999999999999999999987
Q ss_pred cCCCCCcccccccccCCccccccccc
Q 004020 746 APDNGKHSIETRLAGTFGYLAPEYAA 771 (779)
Q Consensus 746 ~~~~~~~~~~~~~~gt~~y~APE~l~ 771 (779)
..... ......||+.|+|||++.
T Consensus 176 ~~~~~---~~~~~~gt~~y~aPE~~~ 198 (327)
T 3aln_A 176 LVDSI---AKTRDAGCRPYMAPERID 198 (327)
T ss_dssp --------------------------
T ss_pred ccccc---ccccCCCCccccCceeec
Confidence 64432 123346999999999984
No 300
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=7e-25 Score=227.75 Aligned_cols=174 Identities=21% Similarity=0.238 Sum_probs=110.6
Q ss_pred EEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCC
Q 004020 70 IQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSF 148 (779)
Q Consensus 70 l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 148 (779)
++..+.+++ .+|..+. ++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|.++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344455555 5666554 478888888888887776 788888888888888888887777777777777777777776
Q ss_pred CCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCC
Q 004020 149 DSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNG 228 (779)
Q Consensus 149 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~ 228 (779)
.+ ..++.+. .+++|++|++++|++++..+..++
T Consensus 89 ~~-------------------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~-------------------- 121 (276)
T 2z62_A 89 QS-------------------------LALGAFS--GLSSLQKLVAVETNLASLENFPIG-------------------- 121 (276)
T ss_dssp CE-------------------------ECTTTTT--TCTTCCEEECTTSCCCCSTTCCCT--------------------
T ss_pred Cc-------------------------cChhhhc--CCccccEEECCCCCccccCchhcc--------------------
Confidence 43 3334443 455666666666666543333332
Q ss_pred chhhhcCCCCccEEEeecCcccCC-CC-CCCCCCCCcEEEccCCccccccChhhhCCCCCC----EEEccCcccccc
Q 004020 229 SVAVIQNMTSLTQLWLHGNSFTGP-LP-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLA----VVNLTNNLFQGQ 299 (779)
Q Consensus 229 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~g~ 299 (779)
.+++|++|+|++|.+++. +| .+..+++|++|++++|++++..+..+..+++|+ .|++++|++++.
T Consensus 122 ------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 122 ------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp ------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred ------cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence 456666666666666552 23 355666666666666666655555665555555 556666655543
No 301
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.92 E-value=4.6e-26 Score=241.22 Aligned_cols=179 Identities=28% Similarity=0.378 Sum_probs=140.6
Q ss_pred HHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh----hHHHHHHHHHHHHHcC----CCCccceEee
Q 004020 585 LRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE----KGFAEFKSEIAVLTKV----RHRHLVGLLG 655 (779)
Q Consensus 585 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l----~h~niv~~~~ 655 (779)
.....++|++.+.||+|+||.||+|+.. +++.||+|++....... .....+.+|+.++.++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 3445678999999999999999999764 68899999997543222 1223466799999998 8999999999
Q ss_pred EEEeCCeEEEEEEe-cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEc-CCC
Q 004020 656 YCLDGNERLLVYEY-MPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLG-DDM 733 (779)
Q Consensus 656 ~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~-~~~ 733 (779)
++...+..++|||| +.+++|.+++.... .+++..++.++.||+.||+|||+ .+|+||||||+||+++ .++
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~ 177 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEKG-----PLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDLRRG 177 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEETTTT
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeCCCC
Confidence 99999999999999 78999999986542 48899999999999999999996 7999999999999999 889
Q ss_pred cEEEEeeccceecCCCCCcccccccccCCcccccccccccCC
Q 004020 734 RAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 734 ~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
.+||+|||+++...... .....||+.|+|||++.+...
T Consensus 178 ~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~ 215 (312)
T 2iwi_A 178 CAKLIDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQY 215 (312)
T ss_dssp EEEECCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCB
T ss_pred eEEEEEcchhhhcccCc----ccccCCcccccCceeeecCCC
Confidence 99999999998765432 234569999999999876543
No 302
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.92 E-value=5.3e-26 Score=241.59 Aligned_cols=179 Identities=26% Similarity=0.358 Sum_probs=149.3
Q ss_pred HHHhhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccCh----hHHHHHHHHHHHHHcCC--CCccceEeeEE
Q 004020 585 LRNVTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSE----KGFAEFKSEIAVLTKVR--HRHLVGLLGYC 657 (779)
Q Consensus 585 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~--h~niv~~~~~~ 657 (779)
.....++|++.+.||+|+||.||+|+.. +++.||+|++....... ...+.+.+|+.++++++ ||||+++++++
T Consensus 38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~ 117 (320)
T 3a99_A 38 KEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF 117 (320)
T ss_dssp --CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE
T ss_pred cCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEE
Confidence 3446678999999999999999999764 68999999997654322 12245678999999996 59999999999
Q ss_pred EeCCeEEEEEEecCC-CChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEc-CCCcE
Q 004020 658 LDGNERLLVYEYMPQ-GTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLG-DDMRA 735 (779)
Q Consensus 658 ~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~-~~~~~ 735 (779)
...+..++||||+.+ ++|.+++.... .+++..++.++.||+.||+|||+ .+|+||||||+||+++ +++.+
T Consensus 118 ~~~~~~~lv~e~~~~~~~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~ 189 (320)
T 3a99_A 118 ERPDSFVLILERPEPVQDLFDFITERG-----ALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGEL 189 (320)
T ss_dssp ECSSEEEEEEECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEE
T ss_pred ecCCcEEEEEEcCCCCccHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeCCCCCE
Confidence 999999999999986 89999986542 57899999999999999999996 8999999999999999 78999
Q ss_pred EEEeeccceecCCCCCcccccccccCCcccccccccccCC
Q 004020 736 KVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETSG 775 (779)
Q Consensus 736 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~ 775 (779)
||+|||+++...... .....||+.|+|||++.+...
T Consensus 190 kL~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~ 225 (320)
T 3a99_A 190 KLIDFGSGALLKDTV----YTDFDGTRVYSPPEWIRYHRY 225 (320)
T ss_dssp EECCCTTCEECCSSC----BCCCCSCGGGSCHHHHHHSCB
T ss_pred EEeeCcccccccccc----ccCCCCCccCCChHHhccCCC
Confidence 999999998765431 234569999999999876543
No 303
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.7e-25 Score=231.74 Aligned_cols=181 Identities=22% Similarity=0.275 Sum_probs=90.1
Q ss_pred ccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCc
Q 004020 85 LNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQ 164 (779)
Q Consensus 85 l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~ 164 (779)
+..+++|+.|++++|.++. ++.+..+++|++|+|++|++++++ .+..+++|++|+|++|++.+ ..+..|.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc-cChhHhcCCcCCC
Confidence 3344555555555555542 234555555555555555555542 34555555555555555543 3333344444444
Q ss_pred eEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEe
Q 004020 165 RFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWL 244 (779)
Q Consensus 165 ~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L 244 (779)
+|++++|++++..+..+. .+++|++|+|++|++++..+..++ .+++|+.|+|
T Consensus 113 ~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~--------------------------~l~~L~~L~l 164 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFD--KLTNLTYLNLAHNQLQSLPKGVFD--------------------------KLTNLTELDL 164 (272)
T ss_dssp EEECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTT--------------------------TCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHhc--cCCCCCEEECCCCccCccCHHHhc--------------------------cCccCCEEEC
Confidence 444444444444444343 345555555555555533333222 3455555555
Q ss_pred ecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCcccc
Q 004020 245 HGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQ 297 (779)
Q Consensus 245 ~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 297 (779)
++|++++.++. +..+++|++|++++|++++..|..+..+++|+.|+|++|++.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 55555554443 445555555555555555544444555555555555555443
No 304
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.92 E-value=2.2e-25 Score=233.98 Aligned_cols=176 Identities=23% Similarity=0.396 Sum_probs=140.3
Q ss_pred HhhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEE-EeCCeEE
Q 004020 587 NVTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYC-LDGNERL 664 (779)
Q Consensus 587 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-~~~~~~~ 664 (779)
.+.++|++.+.||+|+||.||+|+. .+++.||+|++.... ...++.+|+++++.++|++++..+.++ ...+..+
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc----cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 3567899999999999999999986 578999999865433 223578899999999988777666555 6677889
Q ss_pred EEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE---cCCCcEEEEeec
Q 004020 665 LVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL---GDDMRAKVADFG 741 (779)
Q Consensus 665 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll---~~~~~~kl~DFG 741 (779)
+||||+ +++|.+++.... ..+++..++.++.||+.||+|||+ ++|+||||||+||++ ++++.+||+|||
T Consensus 82 lv~e~~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg 153 (296)
T 4hgt_A 82 MVMELL-GPSLEDLFNFCS----RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFG 153 (296)
T ss_dssp EEEECC-CCBHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEECCCT
T ss_pred EEEEcc-CCCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEEecCc
Confidence 999999 899999986432 258999999999999999999997 899999999999999 788999999999
Q ss_pred cceecCCCCCc-----ccccccccCCcccccccccccC
Q 004020 742 LVRLAPDNGKH-----SIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 742 ~a~~~~~~~~~-----~~~~~~~gt~~y~APE~l~~~~ 774 (779)
+++........ .......||+.|+|||++.+..
T Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 191 (296)
T 4hgt_A 154 LAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIE 191 (296)
T ss_dssp TCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCC
T ss_pred cceeccCcccCccCCCCcccccCCCccccchHHhcCCC
Confidence 99876553221 1123457999999999987653
No 305
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.92 E-value=3.8e-25 Score=236.91 Aligned_cols=171 Identities=25% Similarity=0.392 Sum_probs=145.2
Q ss_pred hhcCCcccceecccccEEEEEEEE--cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCC------ccceEeeEEEe
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL--HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHR------HLVGLLGYCLD 659 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~~~~~~~~ 659 (779)
+.++|++.+.||+|+||.||+|.. .+++.||+|+++.. ....+.+.+|+++++.++|+ +|+++++++..
T Consensus 12 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~ 88 (339)
T 1z57_A 12 LSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV---DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH 88 (339)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred ccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC---CchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence 456899999999999999999986 36889999998643 34456788999999988765 49999999999
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC--------
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD-------- 731 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~-------- 731 (779)
.+..++||||+ +++|.+++..... ..+++..+..++.||+.||+|||+ ++|+||||||+||+++.
T Consensus 89 ~~~~~lv~e~~-~~~l~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~ 161 (339)
T 1z57_A 89 HGHICIVFELL-GLSTYDFIKENGF---LPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAYN 161 (339)
T ss_dssp TTEEEEEEECC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEEEEC
T ss_pred CCcEEEEEcCC-CCCHHHHHHhcCC---CCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeccccccccC
Confidence 99999999999 8899999865432 357899999999999999999997 89999999999999987
Q ss_pred -----------CCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 732 -----------DMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 732 -----------~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
++.+||+|||+++..... .....||+.|+|||++.+.
T Consensus 162 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~ 209 (339)
T 1z57_A 162 PKIKRDERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILAL 209 (339)
T ss_dssp ----CEEEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTS
T ss_pred CccccccccccCCCceEeeCcccccCccc-----cccccCCccccChHHhhCC
Confidence 668999999999875432 2345799999999998764
No 306
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.92 E-value=3.5e-25 Score=232.45 Aligned_cols=175 Identities=23% Similarity=0.397 Sum_probs=144.0
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEE-EeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYC-LDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-~~~~~~~l 665 (779)
+.++|++.+.||+|+||.||+|+. .+++.||+|++..... .+++.+|+++++.++|++++..+.++ ...+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 3uzp_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS----CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc----hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence 457899999999999999999986 5789999999865432 23588999999999988866665555 56678899
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE---cCCCcEEEEeecc
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL---GDDMRAKVADFGL 742 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll---~~~~~~kl~DFG~ 742 (779)
||||+ +++|.+++.... ..+++..++.++.||+.||+|||+ ++|+||||||+||++ ++++.+||+|||+
T Consensus 83 v~e~~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~ 154 (296)
T 3uzp_A 83 VMELL-GPSLEDLFNFCS----RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL 154 (296)
T ss_dssp EEECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred EEEec-CCCHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeCCC
Confidence 99999 899999986432 258999999999999999999996 899999999999999 4888999999999
Q ss_pred ceecCCCCCcc-----cccccccCCcccccccccccC
Q 004020 743 VRLAPDNGKHS-----IETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 743 a~~~~~~~~~~-----~~~~~~gt~~y~APE~l~~~~ 774 (779)
++......... ......||+.|+|||++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 191 (296)
T 3uzp_A 155 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIE 191 (296)
T ss_dssp CEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCC
T ss_pred cccccccccccccccccccccccccccCChhhhcCCC
Confidence 98765542211 123457999999999987653
No 307
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.92 E-value=2e-25 Score=258.93 Aligned_cols=176 Identities=24% Similarity=0.388 Sum_probs=143.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc----CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH----DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNER 663 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 663 (779)
..++|++.+.||+|+||.||+|.+. .+..||+|++.... .....+.+.+|+.++++++||||+++++++. .+..
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~ 465 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT-SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 465 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence 3567999999999999999999864 25679999886533 3445578999999999999999999999984 4668
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
++||||+++|+|.+++.... ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||++
T Consensus 466 ~lv~E~~~~g~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~DFG~a 538 (656)
T 2j0j_A 466 WIIMELCTLGELRSFLQVRK----FSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLS 538 (656)
T ss_dssp EEEEECCTTCBHHHHHHHTT----TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCCC
T ss_pred EEEEEcCCCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEecCCC
Confidence 99999999999999986542 258899999999999999999997 89999999999999999999999999999
Q ss_pred eecCCCCCcccccccccCCccccccccccc
Q 004020 744 RLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 744 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+....... .......+|+.|+|||++.+.
T Consensus 539 ~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~ 567 (656)
T 2j0j_A 539 RYMEDSTY-YKASKGKLPIKWMAPESINFR 567 (656)
T ss_dssp CSCCC-----------CCGGGCCHHHHHHC
T ss_pred eecCCCcc-eeccCCCCCcceeCHHHhcCC
Confidence 87654322 222334578899999998654
No 308
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=99.92 E-value=2.5e-25 Score=243.97 Aligned_cols=172 Identities=27% Similarity=0.332 Sum_probs=142.6
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC--------CCccceEeeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR--------HRHLVGLLGYCL 658 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~~~~~~~ 658 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++... ....+.+.+|+++++.++ |+||+++++++.
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~ 111 (397)
T 1wak_A 35 FNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA---EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK 111 (397)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred cCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC---CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence 3578999999999999999999764 6889999998743 344567889999999985 788999999988
Q ss_pred ----eCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-CcEEcCCCCCCEEEcCCC
Q 004020 659 ----DGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQ-SFIHRDLKPSNILLGDDM 733 (779)
Q Consensus 659 ----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~-~ivHrDlkp~NIll~~~~ 733 (779)
.....++||||+ ++++.+++..... ..+++..++.++.||+.||+|||+ + +|+||||||+|||++.++
T Consensus 112 ~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~~~~ 184 (397)
T 1wak_A 112 ISGVNGTHICMVFEVL-GHHLLKWIIKSNY---QGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLSVNE 184 (397)
T ss_dssp EEETTEEEEEEEECCC-CCBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEECCCH
T ss_pred ecCCCCceEEEEEecc-CccHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEeccc
Confidence 455789999999 5566666644321 358999999999999999999997 6 999999999999999775
Q ss_pred -------------------------------------------------cEEEEeeccceecCCCCCcccccccccCCcc
Q 004020 734 -------------------------------------------------RAKVADFGLVRLAPDNGKHSIETRLAGTFGY 764 (779)
Q Consensus 734 -------------------------------------------------~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y 764 (779)
.+||+|||+++..... .....||+.|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y 259 (397)
T 1wak_A 185 QYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQY 259 (397)
T ss_dssp HHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGG
T ss_pred hhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcc
Confidence 7999999999876432 2345799999
Q ss_pred cccccccccC
Q 004020 765 LAPEYAAETS 774 (779)
Q Consensus 765 ~APE~l~~~~ 774 (779)
+|||++.+..
T Consensus 260 ~aPE~~~~~~ 269 (397)
T 1wak_A 260 RSLEVLIGSG 269 (397)
T ss_dssp CCHHHHHTSC
T ss_pred cCChhhcCCC
Confidence 9999987653
No 309
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.92 E-value=3.8e-25 Score=246.61 Aligned_cols=175 Identities=23% Similarity=0.392 Sum_probs=144.6
Q ss_pred hhcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCC-CccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRH-RHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~~~~~~~~~~~~~l 665 (779)
+.++|++.++||+|+||.||+|+. .+++.||||++..... ..++.+|+++++.++| ++|..+..++...+..++
T Consensus 5 i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 5 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK----HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp ETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS----SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred cCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc----cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence 457899999999999999999986 4789999998765432 2347889999999986 566666777778888999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE---cCCCcEEEEeecc
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL---GDDMRAKVADFGL 742 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll---~~~~~~kl~DFG~ 742 (779)
||||+ +++|.+++.... ..+++..++.|+.||+.||+|||+ ++|+||||||+|||| +.++.+||+|||+
T Consensus 81 vme~~-g~sL~~ll~~~~----~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DFGl 152 (483)
T 3sv0_A 81 VMDLL-GPSLEDLFNFCS----RKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFGL 152 (483)
T ss_dssp EEECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred EEECC-CCCHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeCCc
Confidence 99999 899999986432 258999999999999999999996 899999999999999 6889999999999
Q ss_pred ceecCCCCCc-----ccccccccCCcccccccccccC
Q 004020 743 VRLAPDNGKH-----SIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 743 a~~~~~~~~~-----~~~~~~~gt~~y~APE~l~~~~ 774 (779)
++........ .......||+.|+|||++.+..
T Consensus 153 a~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~ 189 (483)
T 3sv0_A 153 AKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIE 189 (483)
T ss_dssp CEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC
T ss_pred ceeccCCccccccccccccccCCCccccCHHHhcCCC
Confidence 9877554321 1123567999999999987653
No 310
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=5.9e-28 Score=270.54 Aligned_cols=231 Identities=18% Similarity=0.199 Sum_probs=140.4
Q ss_pred cEEEEEecCCCccc----cCCccccCCCCCcEEEcccCccccCCC-C-CCCCC----CccEEecCCCCCCC----CCccc
Q 004020 66 RVTRIQIGGQNIEG----TLPKELNSLSSLTVLEVMKNKLTGQIP-S-LSGLS----SLQEVLFDDNNFTS----VPSDF 131 (779)
Q Consensus 66 ~v~~l~l~~~~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~-~~~l~----~L~~L~l~~N~l~~----~~~~~ 131 (779)
++++|+|++|+++. .++..+..+++|++|+|++|+++...+ . +..++ +|++|+|++|+++. ..+..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 56677777777664 345566666777777777777655322 1 22233 57777777777764 23455
Q ss_pred ccCCCCccEEEcccCCCCCCCCccc-----ccCCCCCceEeccCceeEeec----CCCccCCCCCcccEEEccCCCCCCc
Q 004020 132 FKGLTSLQTISLDYNSFDSWVIPES-----LKDATGLQRFSANGANITGTI----PDFLGGDTIPGLMHLHLAFNFLQGP 202 (779)
Q Consensus 132 ~~~l~~L~~L~Ls~N~l~~~~~p~~-----~~~l~~L~~L~l~~n~l~~~~----p~~~~~~~l~~L~~L~L~~N~l~~~ 202 (779)
+..+++|++|+|++|.+.. ..+.. +...++|++|++++|++++.. +..+. .+++|++|+|++|.++..
T Consensus 109 l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR--AKPDFKELTVSNNDINEA 185 (461)
T ss_dssp TTSCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH--HCTTCCEEECCSSBCHHH
T ss_pred HccCCceeEEECCCCcCch-HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh--hCCCCCEEECcCCCcchH
Confidence 6677777777777777643 11111 122456777777777766532 33333 356777777777777654
Q ss_pred CCCcccc------CCcceeeccCCCCCCCCCC-chhhhcCCCCccEEEeecCcccCCC-----CC-CCCCCCCcEEEccC
Q 004020 203 IPLSFGK------SSIQTLWLNGQKGDSKLNG-SVAVIQNMTSLTQLWLHGNSFTGPL-----PD-LSGLSSLQDFSVRD 269 (779)
Q Consensus 203 ~p~~~~~------~~L~~l~l~~n~~~~~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-----~~-~~~l~~L~~L~l~~ 269 (779)
.+..+.. .+|+.|++++|.+...... ....+..+++|++|+|++|.++... +. +..+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 4444332 3677777777765432111 2344556777778888877776531 22 33567778888888
Q ss_pred Cccccc----cChhhhCCCCCCEEEccCcccccc
Q 004020 270 NQLTGI----VPSSLVNLHSLAVVNLTNNLFQGQ 299 (779)
Q Consensus 270 N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ 299 (779)
|+++.. ++..+..+++|++|+|++|++++.
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 877753 566677777788888888777643
No 311
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.92 E-value=6.1e-25 Score=234.98 Aligned_cols=169 Identities=26% Similarity=0.355 Sum_probs=120.8
Q ss_pred hhcCCcccc-eecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe----CC
Q 004020 588 VTNNFSEEN-VLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD----GN 661 (779)
Q Consensus 588 ~~~~~~~~~-~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~ 661 (779)
+.++|.+.+ .||+|+||.||+|+.. +++.||+|++.... . ...+....++.+.||||+++++++.. ..
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~---~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 99 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP---K---ARQEVDHHWQASGGPHIVCILDVYENMHHGKR 99 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH---H---HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH---H---HHHHHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence 456888854 6999999999999876 68999999986432 1 12223334566789999999999976 44
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC---CCcEEEE
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD---DMRAKVA 738 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~---~~~~kl~ 738 (779)
..++||||+++|+|.+++..... ..+++..++.++.||+.||+|||+ ++|+||||||+||+++. ++.+||+
T Consensus 100 ~~~lv~e~~~gg~L~~~l~~~~~---~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~~~kl~ 173 (336)
T 3fhr_A 100 CLLIIMECMEGGELFSRIQERGD---QAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLT 173 (336)
T ss_dssp EEEEEEECCTTEEHHHHHHTC-C---CCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred eEEEEEeccCCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCceEEEe
Confidence 57999999999999999965432 358999999999999999999996 79999999999999976 4559999
Q ss_pred eeccceecCCCCCcccccccccCCcccccccccc
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
|||+++...... .....||+.|+|||++.+
T Consensus 174 Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~~~ 203 (336)
T 3fhr_A 174 DFGFAKETTQNA----LQTPCYTPYYVAPEVLGP 203 (336)
T ss_dssp CCTTCEEC--------------------------
T ss_pred ccccceeccccc----cccCCCCcCccChhhhCC
Confidence 999998764321 234568999999999854
No 312
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.92 E-value=5.1e-26 Score=241.69 Aligned_cols=176 Identities=24% Similarity=0.435 Sum_probs=142.9
Q ss_pred hhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
..++|++.+.||+|+||.||+|+... .||+|++..........+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~ 108 (319)
T 2y4i_B 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT 108 (319)
T ss_dssp CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence 45789999999999999999998753 4999998765443444456788999999999999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+++++|.+++.... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++ ++.+||+|||+++...
T Consensus 109 e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~ 180 (319)
T 2y4i_B 109 SLCKGRTLYSVVRDAK----IVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLFSISG 180 (319)
T ss_dssp BCCCSEEHHHHTTSSC----CCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---CCEECCCSCCC---
T ss_pred ecccCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCCEEEeecCCccccc
Confidence 9999999999985432 258899999999999999999996 8999999999999998 6799999999987543
Q ss_pred CCCC---cccccccccCCccccccccccc
Q 004020 748 DNGK---HSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 748 ~~~~---~~~~~~~~gt~~y~APE~l~~~ 773 (779)
.... ........||+.|+|||++.+.
T Consensus 181 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~ 209 (319)
T 2y4i_B 181 VLQAGRREDKLRIQNGWLCHLAPEIIRQL 209 (319)
T ss_dssp -------CCSCBCCSGGGGTSCHHHHSCB
T ss_pred cccccccccccccCCCcccccChHHhhhc
Confidence 2111 1112334689999999998763
No 313
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=234.29 Aligned_cols=174 Identities=26% Similarity=0.368 Sum_probs=128.4
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 667 (779)
.++|++.+.||+|+||.||+|+.. +++.||+|++..........+.+.++..+++.++||||+++++++...+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 467999999999999999999875 7899999999765433333444556666788889999999999999999999999
Q ss_pred EecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceecC
Q 004020 668 EYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 668 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
||+ ++.+..+..... ..+++..+..++.|++.||+|||+ +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 104 e~~-~~~~~~l~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~ 176 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQ----GPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGQIKLCDFGISGRLV 176 (318)
T ss_dssp CCC-SEEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred ecc-CCcHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHh--hCCEEeCCCCHHHEEECCCCCEEEEECCCchhcc
Confidence 999 455554443221 258899999999999999999996 2389999999999999999999999999987664
Q ss_pred CCCCcccccccccCCcccccccccc
Q 004020 748 DNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 748 ~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
... ......||+.|+|||++.+
T Consensus 177 ~~~---~~~~~~~~~~y~aPE~~~~ 198 (318)
T 2dyl_A 177 DDK---AKDRSAGCAAYMAPERIDP 198 (318)
T ss_dssp -------------CCTTCCHHHHC-
T ss_pred CCc---cccccCCCccccChhhccc
Confidence 422 1234569999999999863
No 314
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.8e-25 Score=244.18 Aligned_cols=170 Identities=26% Similarity=0.406 Sum_probs=133.8
Q ss_pred cCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e 668 (779)
.+|...+.||+|+||.||.....+++.||||++..... ..+.+|+++++.+ +||||+++++++.+.+..|+|||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E 98 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE 98 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence 46888999999999997766667899999999865432 2356899999999 79999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC-----CCcEEEEeeccc
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD-----DMRAKVADFGLV 743 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~-----~~~~kl~DFG~a 743 (779)
|++ |+|.+++..... ...+..++.++.||+.||+|||+ .+|+||||||+||+++. ...+||+|||+|
T Consensus 99 ~~~-g~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a 170 (432)
T 3p23_A 99 LCA-ATLQEYVEQKDF----AHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLC 170 (432)
T ss_dssp CCS-EEHHHHHHSSSC----CCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEE
T ss_pred CCC-CCHHHHHHhcCC----CccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEecccce
Confidence 996 599999865432 23444567899999999999997 89999999999999953 346889999999
Q ss_pred eecCCCCC-cccccccccCCcccccccccc
Q 004020 744 RLAPDNGK-HSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 744 ~~~~~~~~-~~~~~~~~gt~~y~APE~l~~ 772 (779)
+....... ........||+.|+|||++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 200 (432)
T 3p23_A 171 KKLAVGRHSFSRRSGVPGTEGWIAPEMLSE 200 (432)
T ss_dssp ECC------------CCSCTTSCCGGGTSC
T ss_pred eeccCCCcceeeccccCCCcCccChhhhhc
Confidence 87654321 122344679999999999975
No 315
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.91 E-value=1.7e-24 Score=235.97 Aligned_cols=174 Identities=23% Similarity=0.282 Sum_probs=145.2
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CC-----ccceEeeEEEeC
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HR-----HLVGLLGYCLDG 660 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~~~~~~~~~ 660 (779)
+.++|++.+.||+|+||.||+|+.. +++.||||+++.. .....++.+|+++++.++ |+ +|+++++++...
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 128 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK---KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR 128 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc---HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence 4679999999999999999999865 6889999998743 334567788999988885 55 499999999999
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEc--CCCcEEEE
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLG--DDMRAKVA 738 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~--~~~~~kl~ 738 (779)
+..++||||++ ++|.+++..... ..+++..+..++.||+.||.|||+. +.+|+||||||+|||++ .++.+||+
T Consensus 129 ~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~ 203 (382)
T 2vx3_A 129 NHLCLVFEMLS-YNLYDLLRNTNF---RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIV 203 (382)
T ss_dssp TEEEEEEECCC-CBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEEC
T ss_pred CceEEEEecCC-CCHHHHHhhcCc---CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEE
Confidence 99999999996 599999865432 2588999999999999999999952 37899999999999994 57889999
Q ss_pred eeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
|||+++..... .....||+.|+|||++.+..
T Consensus 204 DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~ 234 (382)
T 2vx3_A 204 DFGSSCQLGQR-----IYQYIQSRFYRSPEVLLGMP 234 (382)
T ss_dssp CCTTCEETTCC-----CCSSCSCGGGCCHHHHTTCC
T ss_pred eccCceecccc-----cccccCCccccChHHHcCCC
Confidence 99999876432 23457999999999987653
No 316
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.91 E-value=3.6e-25 Score=245.11 Aligned_cols=174 Identities=28% Similarity=0.331 Sum_probs=132.0
Q ss_pred cCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcC-CCCccceEeeEEEeCCeEEEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKV-RHRHLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e 668 (779)
+.|...+.||+|+||+||.+...+|+.||||++.... .+.+.+|+++++++ +||||+++++++.+.+..++|||
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~-----~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E 89 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF-----CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE 89 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG-----HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH-----HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence 4556678999999999988777789999999986432 34578899999886 89999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCC--CCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCC-------------C
Q 004020 669 YMPQGTLSRHLFNRKEEGL--KPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDD-------------M 733 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~-------------~ 733 (779)
|+. |+|.+++........ ....+..++.++.||+.||+|||+ .+|+||||||+|||++.+ +
T Consensus 90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~ 165 (434)
T 2rio_A 90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENL 165 (434)
T ss_dssp CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCcccccccccCCCce
Confidence 996 699999965432211 111333467899999999999997 899999999999999754 4
Q ss_pred cEEEEeeccceecCCCCCcc--cccccccCCcccccccccc
Q 004020 734 RAKVADFGLVRLAPDNGKHS--IETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 734 ~~kl~DFG~a~~~~~~~~~~--~~~~~~gt~~y~APE~l~~ 772 (779)
.+||+|||+++......... ......||+.|+|||++.+
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 206 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEE 206 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHHSC
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhcc
Confidence 89999999998775432211 1234579999999999976
No 317
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=7.2e-28 Score=269.83 Aligned_cols=311 Identities=18% Similarity=0.204 Sum_probs=224.7
Q ss_pred CcEEEEEecCCCccccCCcccc-CCC----CCcEEEcccCcccc----CCC-CCCCCCCccEEecCCCCCCCCCccc---
Q 004020 65 NRVTRIQIGGQNIEGTLPKELN-SLS----SLTVLEVMKNKLTG----QIP-SLSGLSSLQEVLFDDNNFTSVPSDF--- 131 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~-~l~----~L~~L~Ls~N~l~~----~~~-~~~~l~~L~~L~l~~N~l~~~~~~~--- 131 (779)
.++++|+|++|.+....+..+. .++ +|++|+|++|+++. .++ .+..+++|++|+|++|.++......
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 5789999999998865554443 355 69999999999884 334 7888999999999999987543332
Q ss_pred --ccCCCCccEEEcccCCCCCCC---CcccccCCCCCceEeccCceeEeecCCCccC---CCCCcccEEEccCCCCCCc-
Q 004020 132 --FKGLTSLQTISLDYNSFDSWV---IPESLKDATGLQRFSANGANITGTIPDFLGG---DTIPGLMHLHLAFNFLQGP- 202 (779)
Q Consensus 132 --~~~l~~L~~L~Ls~N~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~---~~l~~L~~L~L~~N~l~~~- 202 (779)
+..+++|++|+|++|++.... ++..+..+++|+.|++++|.++...+..+.. ...++|++|+|++|.+++.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 334668999999999886421 3566777899999999999987554444320 1245899999999999864
Q ss_pred ---CCCcccc-CCcceeeccCCCCCCCCCCc--hhhhcCCCCccEEEeecCcccCC----CC-CCCCCCCCcEEEccCCc
Q 004020 203 ---IPLSFGK-SSIQTLWLNGQKGDSKLNGS--VAVIQNMTSLTQLWLHGNSFTGP----LP-DLSGLSSLQDFSVRDNQ 271 (779)
Q Consensus 203 ---~p~~~~~-~~L~~l~l~~n~~~~~~~~~--~~~~~~l~~L~~L~L~~N~l~~~----~~-~~~~l~~L~~L~l~~N~ 271 (779)
++..+.. .+|+.|++++|.+....... ......+++|++|+|++|.++.. ++ .+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 4555544 67999999998765321111 11223578999999999999873 33 46678999999999999
Q ss_pred cccccChhhhCC-----CCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchh
Q 004020 272 LTGIVPSSLVNL-----HSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAV 346 (779)
Q Consensus 272 l~~~~p~~l~~l-----~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (779)
+.+..+..+... ++|+.|+|++|.+++..... +..
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~------------------------------l~~---------- 335 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH------------------------------FSS---------- 335 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH------------------------------HHH----------
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH------------------------------HHH----------
Confidence 986655555543 68999999999887532110 000
Q ss_pred cccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccc-----cccCCeEeccCccccc----cCCccCCCC
Q 004020 347 LAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSR-----LTSLRQLMLSGNELTG----TIPKELTTL 417 (779)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~g----~iP~~l~~l 417 (779)
.....++|+.|+|++|.+++..+..+.. .++|++|+|++|++++ .+|..+..+
T Consensus 336 ------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 336 ------------------VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp ------------------HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred ------------------HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 0011237889999999988876665553 6789999999999986 788888888
Q ss_pred CCCCceeccCCccccc
Q 004020 418 PSLEMLDVSNNHLFGK 433 (779)
Q Consensus 418 ~~L~~L~Ls~N~l~g~ 433 (779)
++|++|||++|++++.
T Consensus 398 ~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 398 HSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCCEEECCSSSCCHH
T ss_pred CCccEEECCCCCCCHH
Confidence 9999999999998764
No 318
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.91 E-value=2e-24 Score=233.00 Aligned_cols=171 Identities=25% Similarity=0.386 Sum_probs=142.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CC-cEEEEEEecccccChhHHHHHHHHHHHHHcCCCCc------cceEeeEEEe
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DG-TKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRH------LVGLLGYCLD 659 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~ 659 (779)
+.++|++.+.||+|+||.||+|... ++ +.||+|++... ....+.+.+|++++++++|++ ++.+++++..
T Consensus 17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~ 93 (355)
T 2eu9_A 17 LQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV---GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF 93 (355)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred ecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc---ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence 3578999999999999999999875 34 68999998643 344567889999999997665 8999999999
Q ss_pred CCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEE----------
Q 004020 660 GNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILL---------- 729 (779)
Q Consensus 660 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll---------- 729 (779)
.+..++||||+ ++++.+++.... ...+++..++.++.||+.||+|||+ ++|+||||||+||++
T Consensus 94 ~~~~~lv~e~~-~~~l~~~l~~~~---~~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~ 166 (355)
T 2eu9_A 94 HGHMCIAFELL-GKNTFEFLKENN---FQPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLYN 166 (355)
T ss_dssp TTEEEEEEECC-CCBHHHHHHHTT---TCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEEEEC
T ss_pred CCeEEEEEecc-CCChHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeccccccccc
Confidence 99999999999 567777765432 2358899999999999999999996 899999999999999
Q ss_pred ---------cCCCcEEEEeeccceecCCCCCcccccccccCCccccccccccc
Q 004020 730 ---------GDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 730 ---------~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
+.++.+||+|||+++..... .....||+.|+|||++.+.
T Consensus 167 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~ 214 (355)
T 2eu9_A 167 EHKSCEEKSVKNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILEL 214 (355)
T ss_dssp CC-CCCEEEESCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTC
T ss_pred ccccccccccCCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecC
Confidence 56789999999999875432 2345799999999998754
No 319
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.5e-24 Score=221.14 Aligned_cols=203 Identities=23% Similarity=0.253 Sum_probs=177.1
Q ss_pred eCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCcc
Q 004020 61 CSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQ 139 (779)
Q Consensus 61 c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 139 (779)
|....+++++++++++++ .+|..+. ++|++|+|++|+|++.++ .|.++++|++|+|++|+++.+++. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344457899999999998 6777665 689999999999998876 799999999999999999998764 7899999
Q ss_pred EEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccC
Q 004020 140 TISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNG 219 (779)
Q Consensus 140 ~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~ 219 (779)
+|+|++|++.. +|..+..+++|+.|++++|+|++..|..|. .+++|++|+|++|+|++..+..+.
T Consensus 81 ~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~----------- 145 (290)
T 1p9a_G 81 TLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLT----------- 145 (290)
T ss_dssp EEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTTSCCCCCCTTTTT-----------
T ss_pred EEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHc--CCCCCCEEECCCCCCCccChhhcc-----------
Confidence 99999999975 788889999999999999999977777786 789999999999999965554443
Q ss_pred CCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccc
Q 004020 220 QKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 220 n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
.+++|+.|+|++|+|++.++. +..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++.+
T Consensus 146 ---------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 146 ---------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ---------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ---------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 689999999999999988775 788999999999999999 789999999999999999999875
Q ss_pred c
Q 004020 299 Q 299 (779)
Q Consensus 299 ~ 299 (779)
.
T Consensus 210 ~ 210 (290)
T 1p9a_G 210 N 210 (290)
T ss_dssp S
T ss_pred c
Confidence 3
No 320
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.3e-24 Score=220.45 Aligned_cols=204 Identities=22% Similarity=0.282 Sum_probs=181.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.+++.|+++++.++. + +.+..+++|++|+|++|++++. +.+.++++|++|+|++|+++++++..|.++++|++|+|+
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 479999999999883 3 3589999999999999999874 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDS 224 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~ 224 (779)
+|++.+ ..+..|..+++|++|++++|++++..+..+. .+++|++|+|++|++++..+..++
T Consensus 118 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~---------------- 178 (272)
T 3rfs_A 118 ENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSYNQLQSLPEGVFD---------------- 178 (272)
T ss_dssp TSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTT----------------
T ss_pred CCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhc--cCccCCEEECCCCCcCccCHHHhc----------------
Confidence 999986 6677799999999999999999977777775 799999999999999976665544
Q ss_pred CCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCC
Q 004020 225 KLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKF 303 (779)
Q Consensus 225 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 303 (779)
.+++|+.|+|++|++++.++. +..+++|+.|++++|.+.+. +++|+.|+++.|+++|.+|..
T Consensus 179 ----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 179 ----------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp ----------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred ----------CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 689999999999999998886 78999999999999999865 557999999999999999986
Q ss_pred CCCc
Q 004020 304 NSPV 307 (779)
Q Consensus 304 ~~~~ 307 (779)
....
T Consensus 242 ~~~~ 245 (272)
T 3rfs_A 242 AGSV 245 (272)
T ss_dssp TSCB
T ss_pred cccc
Confidence 6543
No 321
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.91 E-value=4.5e-25 Score=251.14 Aligned_cols=176 Identities=29% Similarity=0.432 Sum_probs=146.0
Q ss_pred hcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe------CC
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD------GN 661 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------~~ 661 (779)
.++|++.+.||+|+||.||+|... +++.||+|++.... .....+++.+|++++++++||||+++++++.. .+
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~-~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL-SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC-CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC-CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 468999999999999999999764 68999999987543 45556789999999999999999999998765 56
Q ss_pred eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCc---EEEE
Q 004020 662 ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMR---AKVA 738 (779)
Q Consensus 662 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~---~kl~ 738 (779)
..++||||+++|+|.+++..... ...+++..++.++.|++.||+|||+ .+|+||||||+||+++.++. +||+
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~~--~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~ 166 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFEN--CCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKII 166 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSSC--TTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred eEEEEEEeCCCCCHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEc
Confidence 78999999999999999865432 2257888999999999999999997 89999999999999997665 9999
Q ss_pred eeccceecCCCCCcccccccccCCccccccccccc
Q 004020 739 DFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAET 773 (779)
Q Consensus 739 DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~ 773 (779)
|||+++...... ......||+.|+|||++.+.
T Consensus 167 DFG~a~~~~~~~---~~~~~~gt~~Y~APE~l~~~ 198 (676)
T 3qa8_A 167 DLGYAKELDQGE---LCTEFVGTLQYLAPELLEQK 198 (676)
T ss_dssp SCCCCCBTTSCC---CCCCCCSCCTTCSSCSSCCS
T ss_pred cccccccccccc---ccccccCCcccCChHHhccC
Confidence 999998765432 22445799999999998754
No 322
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.91 E-value=1.3e-24 Score=236.22 Aligned_cols=171 Identities=23% Similarity=0.339 Sum_probs=142.9
Q ss_pred hcCCcccceecccccEEEEEEEE-cCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-----------CCccceEeeE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGEL-HDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-----------HRHLVGLLGY 656 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~~~~~ 656 (779)
.++|++.+.||+|+||.||+|+. .+++.||+|++... ....+.+.+|++++++++ ||||++++++
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~ 94 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD---KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH 94 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC---ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHH
Confidence 35899999999999999999986 47899999998743 234467889999999886 8999999999
Q ss_pred EEeCC----eEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-CcEEcCCCCCCEEEc-
Q 004020 657 CLDGN----ERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQ-SFIHRDLKPSNILLG- 730 (779)
Q Consensus 657 ~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~-~ivHrDlkp~NIll~- 730 (779)
+...+ ..++||||+ +++|.+++..... ..+++..+..++.||+.||+|||+ + +|+||||||+||+++
T Consensus 95 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~~ 167 (373)
T 1q8y_A 95 FNHKGPNGVHVVMVFEVL-GENLLALIKKYEH---RGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLMEI 167 (373)
T ss_dssp EEEEETTEEEEEEEECCC-CEEHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEEE
T ss_pred hhccCCCCceEEEEEecC-CCCHHHHHHHhhc---cCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEec
Confidence 98654 689999999 8899999865432 248899999999999999999997 6 999999999999994
Q ss_pred -----CCCcEEEEeeccceecCCCCCcccccccccCCcccccccccccC
Q 004020 731 -----DDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAETS 774 (779)
Q Consensus 731 -----~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~ 774 (779)
..+.+||+|||+++..... .....||+.|+|||++.+..
T Consensus 168 ~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~ 211 (373)
T 1q8y_A 168 VDSPENLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAP 211 (373)
T ss_dssp EETTTTEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCC
T ss_pred cCCCcCcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCC
Confidence 4458999999999876432 23347899999999987653
No 323
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=8.4e-24 Score=216.20 Aligned_cols=190 Identities=20% Similarity=0.320 Sum_probs=132.5
Q ss_pred CCCcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcc
Q 004020 52 DPCKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSD 130 (779)
Q Consensus 52 ~~C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~ 130 (779)
+||.|.|.+|.. ..+++++++++++ .+|..+. ++|++|+|++|++++.++ .|.++++|++|+|++|+++++++.
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence 577999999953 3567999999998 6777665 589999999999998887 789999999999999999999988
Q ss_pred cccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccC
Q 004020 131 FFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKS 210 (779)
Q Consensus 131 ~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 210 (779)
.|..+++|++|+|++|++.+ ..+..|..+++|++|+|++|+|++..+..+.
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---------------------------- 128 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD---------------------------- 128 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------
T ss_pred HhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhc----------------------------
Confidence 88889999999999998865 3344445555555555554444433333232
Q ss_pred CcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccChhhhCCCCCCEE
Q 004020 211 SIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVV 289 (779)
Q Consensus 211 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L 289 (779)
.+++|+.|+|++|+|++.++ .+..+++|++|+|++|+|++..+..+..+++|+.|
T Consensus 129 ------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 129 ------------------------RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp ------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ------------------------cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 34555555555555555555 25555666666666666665555566666666666
Q ss_pred EccCcccccc
Q 004020 290 NLTNNLFQGQ 299 (779)
Q Consensus 290 ~Ls~N~l~g~ 299 (779)
+|++|++++.
T Consensus 185 ~l~~N~~~c~ 194 (251)
T 3m19_A 185 TLFGNQFDCS 194 (251)
T ss_dssp ECCSCCBCTT
T ss_pred EeeCCceeCC
Confidence 6666666654
No 324
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=4.5e-25 Score=249.74 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=124.3
Q ss_pred cccceecccccEEEEEEEEcCCcEEEEEEecccccChh------HHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEEE
Q 004020 593 SEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEK------GFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 593 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 666 (779)
...+.||+|+||.||+|+. .++.+++|+......... ..+++.+|++++++++||||+++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3457899999999999944 578889998654332211 235689999999999999999776677777888999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
|||+++++|.+++.. +..++.|+++||+|||+ ++|+||||||+|||++. ++||+|||+|+..
T Consensus 418 mE~~~ggsL~~~l~~-------------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFGla~~~ 479 (540)
T 3en9_A 418 MSYINGKLAKDVIED-------------NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFGLGKIS 479 (540)
T ss_dssp EECCCSEEHHHHSTT-------------CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCTTCEEC
T ss_pred EECCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECccCEEC
Confidence 999999999999843 45899999999999996 89999999999999998 9999999999987
Q ss_pred CCCCCcc-----cccccccCCcccccccccc
Q 004020 747 PDNGKHS-----IETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 747 ~~~~~~~-----~~~~~~gt~~y~APE~l~~ 772 (779)
....... ......||+.|||||++.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~ 510 (540)
T 3en9_A 480 NLDEDKAVDLIVFKKAVLSTHHEKFDEIWER 510 (540)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CCccccccchhhhhhhhcCCCCcCCHHHHHH
Confidence 5432111 1235679999999999875
No 325
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5e-23 Score=212.90 Aligned_cols=178 Identities=22% Similarity=0.314 Sum_probs=124.6
Q ss_pred CCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEecc
Q 004020 90 SLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSAN 169 (779)
Q Consensus 90 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~ 169 (779)
+++.+++++|+++.++..+. ++|++|+|++|+++.+++..|.++++|++|+|++|++.. ..+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECC
Confidence 57789999998887655554 678889999999988888888888888888888888875 444556777777777777
Q ss_pred CceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcc
Q 004020 170 GANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSF 249 (779)
Q Consensus 170 ~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 249 (779)
+|.+++..+..+. .+++|++|+|++|++++..+..++ .+++|++|+|++|.+
T Consensus 94 ~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~--------------------------~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 94 DNKLQALPIGVFD--QLVNLAELRLDRNQLKSLPPRVFD--------------------------SLTKLTYLSLGYNEL 145 (270)
T ss_dssp SSCCCCCCTTTTT--TCSSCCEEECCSSCCCCCCTTTTT--------------------------TCTTCCEEECCSSCC
T ss_pred CCcCCcCCHhHcc--cccCCCEEECCCCccCeeCHHHhC--------------------------cCcCCCEEECCCCcC
Confidence 7777755555554 566777777777777654444433 466677777777777
Q ss_pred cCCCCC-CCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccc
Q 004020 250 TGPLPD-LSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 250 ~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
++.++. +..+++|++|++++|++++..+..|..+++|++|+|++|++++
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 665554 5666667777777776665555556666666666666666553
No 326
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.3e-23 Score=216.23 Aligned_cols=204 Identities=28% Similarity=0.324 Sum_probs=144.1
Q ss_pred CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCC
Q 004020 107 SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTI 186 (779)
Q Consensus 107 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l 186 (779)
.++++++|+++++++|.++.+|+... ++|++|+|++|++.+ ..+..|..+++|+.|++++|.|++..+. + .+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~--~l 76 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD--G--TL 76 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC--S--CC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC--C--CC
Confidence 46778889999999999998887643 578888888888865 4566777777777777777777754433 2 46
Q ss_pred CcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEE
Q 004020 187 PGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDF 265 (779)
Q Consensus 187 ~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L 265 (779)
++|++|+|++|+|+ .+|..+. .+++|++|+|++|+|++.++. |..+++|++|
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~--------------------------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQ--------------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTT--------------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred CcCCEEECCCCcCC-cCchhhc--------------------------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 67777777777776 4444332 456667777777777666553 6666666666
Q ss_pred EccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCch
Q 004020 266 SVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPA 345 (779)
Q Consensus 266 ~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (779)
+|++|+|++..+..|..+++|+.|+|++|+|++
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------------------------------- 162 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE----------------------------------------------- 162 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-----------------------------------------------
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCc-----------------------------------------------
Confidence 666666665555556666666666666666553
Q ss_pred hcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceec
Q 004020 346 VLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDV 425 (779)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 425 (779)
..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|
T Consensus 163 ---------------------------------------l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 163 ---------------------------------------LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp ---------------------------------------CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred ---------------------------------------cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEe
Confidence 23334567788888888888888 88888888888888888
Q ss_pred cCCcccc
Q 004020 426 SNNHLFG 432 (779)
Q Consensus 426 s~N~l~g 432 (779)
++|++..
T Consensus 203 ~~Np~~C 209 (290)
T 1p9a_G 203 HGNPWLC 209 (290)
T ss_dssp CSCCBCC
T ss_pred CCCCccC
Confidence 8887753
No 327
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.2e-23 Score=211.50 Aligned_cols=194 Identities=18% Similarity=0.195 Sum_probs=98.4
Q ss_pred cEEEEEecCCCccccCCccccCCCCCcEEEcccCc-cccCCC-CCCCCCCccEEecCC-CCCCCCCcccccCCCCccEEE
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNK-LTGQIP-SLSGLSSLQEVLFDD-NNFTSVPSDFFKGLTSLQTIS 142 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~ 142 (779)
.++.|++++|++++..+..|..+++|++|+|++|+ ++.+++ .|.++++|++|+|++ |+++.+++..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34555555555554444445555555555555554 444444 445555555555554 555555555555555555555
Q ss_pred cccCCCCCCCCcccccCCCCCc---eEeccCc-eeEeecCCCccCCCCCccc-EEEccCCCCCCcCCCccccCCcceeec
Q 004020 143 LDYNSFDSWVIPESLKDATGLQ---RFSANGA-NITGTIPDFLGGDTIPGLM-HLHLAFNFLQGPIPLSFGKSSIQTLWL 217 (779)
Q Consensus 143 Ls~N~l~~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~~L~~l~l 217 (779)
|++|++.+ +|. |..+++|+ .|++++| ++++..+..|. .+++|+ +|+|++|+++ .+|....
T Consensus 112 l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--~l~~L~~~L~l~~n~l~-~i~~~~~--------- 176 (239)
T 2xwt_C 112 IFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--GLCNETLTLKLYNNGFT-SVQGYAF--------- 176 (239)
T ss_dssp EEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT--TTBSSEEEEECCSCCCC-EECTTTT---------
T ss_pred CCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCccccc--chhcceeEEEcCCCCCc-ccCHhhc---------
Confidence 55555543 333 44444444 5555555 44444333343 344555 5555555554 3332211
Q ss_pred cCCCCCCCCCCchhhhcCCCCccEEEeecCc-ccCCCCC-CCCC-CCCcEEEccCCccccccChhhhCCCCCCEEEccCc
Q 004020 218 NGQKGDSKLNGSVAVIQNMTSLTQLWLHGNS-FTGPLPD-LSGL-SSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNN 294 (779)
Q Consensus 218 ~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~l-~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N 294 (779)
..++|+.|+|++|+ +++.++. |..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 177 -----------------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 -----------------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -----------------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred -----------------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 12556666666663 6655443 5556 666666666666663 3332 4556666666554
No 328
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.90 E-value=2.5e-23 Score=216.82 Aligned_cols=146 Identities=12% Similarity=0.046 Sum_probs=128.7
Q ss_pred hhcCCcccceecccccEEEEEEEEc-CCcEEEEEEecccccC-hhHHHHHHHHHHHHHcCCCCccceEeeEEEeCCeEEE
Q 004020 588 VTNNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVS-EKGFAEFKSEIAVLTKVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 588 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 665 (779)
+.++|++.+.||+|+||.||+|+.. +++.||+|++...... ....+.+.+|+..+++++||||+++++++.+.+..|+
T Consensus 29 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 108 (286)
T 3uqc_A 29 ANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLV 108 (286)
T ss_dssp TTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred ecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEE
Confidence 3468999999999999999999876 5899999999865433 4455789999999999999999999999999999999
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccc
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLV 743 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 743 (779)
||||+++++|.+++... ....++.+|+.||+.||+|||+ ++|+||||||+||+++.++.+||+++|..
T Consensus 109 v~e~~~g~~L~~~l~~~-------~~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~~~ 176 (286)
T 3uqc_A 109 VAEWIRGGSLQEVADTS-------PSPVGAIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPATM 176 (286)
T ss_dssp EEECCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCCCC
T ss_pred EEEecCCCCHHHHHhcC-------CChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEecccc
Confidence 99999999999998431 2455788999999999999997 89999999999999999999999988764
No 329
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.9e-24 Score=226.06 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=134.2
Q ss_pred CccEEEcccCCCCCCCCcccc--cCCCCCceEeccCceeEeecC----CCccCCCCCcccEEEccCCCCCCcCCCccccC
Q 004020 137 SLQTISLDYNSFDSWVIPESL--KDATGLQRFSANGANITGTIP----DFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKS 210 (779)
Q Consensus 137 ~L~~L~Ls~N~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 210 (779)
+|++|+|++|++.+ ..|..+ ..+++|+.|++++|.+++..+ ..+. .+++|++|+|++|++++..|..++
T Consensus 92 ~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~-- 166 (310)
T 4glp_A 92 RLKELTLEDLKITG-TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVR-- 166 (310)
T ss_dssp CCCEEEEESCCCBS-CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCC--
T ss_pred ceeEEEeeCCEecc-chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhc--
Confidence 34444444444433 233333 444444444444444443333 1121 467777888888887766665554
Q ss_pred CcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccC---CCCC--CCCCCCCcEEEccCCccccccCh----hhh
Q 004020 211 SIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTG---PLPD--LSGLSSLQDFSVRDNQLTGIVPS----SLV 281 (779)
Q Consensus 211 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~--~~~l~~L~~L~l~~N~l~~~~p~----~l~ 281 (779)
.+++|++|+|++|++.+ .++. +..+++|++|++++|+++. +|. .+.
T Consensus 167 ------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 167 ------------------------AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp ------------------------CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred ------------------------cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 47778888888887765 2222 3577888888888888863 333 357
Q ss_pred CCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCC
Q 004020 282 NLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDW 361 (779)
Q Consensus 282 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (779)
.+++|++|+|++|++++..|..+..
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~------------------------------------------------------- 246 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPR------------------------------------------------------- 246 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSS-------------------------------------------------------
T ss_pred cCCCCCEEECCCCCCCccchhhHHh-------------------------------------------------------
Confidence 7888999999999988876643211
Q ss_pred CccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCCcccc
Q 004020 362 KGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFG 432 (779)
Q Consensus 362 ~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g 432 (779)
+...++|+.|+|++|+|+ .+|..+. ++|++|+|++|+|++ +|. +..+++|+.|+|++|+|+.
T Consensus 247 ----~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 247 ----CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ----CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred ----ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 111247888999999998 6787775 799999999999995 344 6788999999999999874
No 330
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.1e-25 Score=241.12 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=65.2
Q ss_pred EEecCCCccccCCccccCCCCCcEEEcccCccccCCC-----CCCCCC-CccEEecCCCCCCCCCcccccCC-----CCc
Q 004020 70 IQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-----SLSGLS-SLQEVLFDDNNFTSVPSDFFKGL-----TSL 138 (779)
Q Consensus 70 l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l-----~~L 138 (779)
.++++|+++|.+|..+...++|++|+|++|.|++..+ .|.+++ +|++|+|++|+++...+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4667777777777666666667777777777776553 356666 67777777777777666555554 677
Q ss_pred cEEEcccCCCCCCCCccc----ccCC-CCCceEeccCceeEe
Q 004020 139 QTISLDYNSFDSWVIPES----LKDA-TGLQRFSANGANITG 175 (779)
Q Consensus 139 ~~L~Ls~N~l~~~~~p~~----~~~l-~~L~~L~l~~n~l~~ 175 (779)
++|+|++|++.. ..+.. +..+ ++|+.|++++|.+++
T Consensus 83 ~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 83 TSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp CEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred cEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 777777777654 22322 2222 455555555555543
No 331
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=5.7e-23 Score=216.61 Aligned_cols=190 Identities=25% Similarity=0.390 Sum_probs=123.8
Q ss_pred cEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
++++|++++++++. +| .+..+++|++|+|++|++++.++ +.++++|++|+|++|+++.++ .+..+++|++|+|++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence 56777777777763 44 56677777777777777766555 677777777777777777664 366677777777777
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCC
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSK 225 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~ 225 (779)
|++.+ ++. +..+++|+.|++++|.+++..+ +. .+++|++|+|++|++++..+
T Consensus 117 n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--------------------- 168 (308)
T 1h6u_A 117 TQITD--VTP-LAGLSNLQVLYLDLNQITNISP--LA--GLTNLQYLSIGNAQVSDLTP--------------------- 168 (308)
T ss_dssp SCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG---------------------
T ss_pred CCCCC--chh-hcCCCCCCEEECCCCccCcCcc--cc--CCCCccEEEccCCcCCCChh---------------------
Confidence 77754 332 6666666777776666664333 33 46666666666666663221
Q ss_pred CCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccc
Q 004020 226 LNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 226 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
+..+++|+.|+|++|++++.++ +..+++|++|++++|++++.. .+..+++|+.|+|++|++++
T Consensus 169 -------l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -------LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -------GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred -------hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 2256777777777777765443 666777777777777776543 26677777777777777764
No 332
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=221.23 Aligned_cols=204 Identities=17% Similarity=0.115 Sum_probs=110.0
Q ss_pred CCCcEEEcccCccccCCC-CC--CCCCCccEEecCCCCCCCCCc----ccccCCCCccEEEcccCCCCCCCCcccccCCC
Q 004020 89 SSLTVLEVMKNKLTGQIP-SL--SGLSSLQEVLFDDNNFTSVPS----DFFKGLTSLQTISLDYNSFDSWVIPESLKDAT 161 (779)
Q Consensus 89 ~~L~~L~Ls~N~l~~~~~-~~--~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~ 161 (779)
++|++|+|++|.+++.+| .+ ..+++|++|+|++|++++..+ ..+..+++|++|+|++|++.+ ..+..|..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-CCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch-hhHHHhccCC
Confidence 345555555555544444 33 445555555555555544221 222344455555555555533 3344445555
Q ss_pred CCceEeccCceeEee--cCCCccCCCCCcccEEEccCCCCCCcCCC---c-ccc-CCcceeeccCCCCCCCCCCchhhhc
Q 004020 162 GLQRFSANGANITGT--IPDFLGGDTIPGLMHLHLAFNFLQGPIPL---S-FGK-SSIQTLWLNGQKGDSKLNGSVAVIQ 234 (779)
Q Consensus 162 ~L~~L~l~~n~l~~~--~p~~~~~~~l~~L~~L~L~~N~l~~~~p~---~-~~~-~~L~~l~l~~n~~~~~~~~~~~~~~ 234 (779)
+|++|+|++|++++. ++.......+++|++|+|++|+++. +|. . ++. .+|++|++++|++....+.....+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 555555555544331 1111100134455555555555541 111 1 111 3444445544444443222222233
Q ss_pred CCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccc
Q 004020 235 NMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 235 ~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
.+++|++|+|++|+|+..++.+. ++|++|+|++|+|++. |. +..+++|+.|+|++|+|+.
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 34799999999999996544554 8999999999999964 44 6788999999999999874
No 333
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.2e-22 Score=206.05 Aligned_cols=197 Identities=19% Similarity=0.231 Sum_probs=129.0
Q ss_pred CccEEecCCCCCCCCCcccccCCCCccEEEcccCC-CCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccE
Q 004020 113 SLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNS-FDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMH 191 (779)
Q Consensus 113 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~ 191 (779)
+|++|+|++|+++.+++..|.++++|++|+|++|+ +.. ..+..|. .+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-------------------------i~~~~f~--~l~~L~~ 84 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-------------------------LESHSFY--NLSKVTH 84 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-------------------------ECTTTEE--SCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-------------------------eCHhHcC--CCcCCcE
Confidence 66777777777777666666666666666666665 543 3333343 4555555
Q ss_pred EEccC-CCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCc---EEEc
Q 004020 192 LHLAF-NFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQ---DFSV 267 (779)
Q Consensus 192 L~L~~-N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~---~L~l 267 (779)
|+|++ |++++..+..|. .+++|++|+|++|++++ +|++..+++|+ +|++
T Consensus 85 L~l~~~n~l~~i~~~~f~--------------------------~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 85 IEIRNTRNLTYIDPDALK--------------------------ELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEI 137 (239)
T ss_dssp EEEEEETTCCEECTTSEE--------------------------CCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEE
T ss_pred EECCCCCCeeEcCHHHhC--------------------------CCCCCCEEeCCCCCCcc-ccccccccccccccEEEC
Confidence 55555 555533333332 45666666666666665 33455666666 7777
Q ss_pred cCC-ccccccChhhhCCCCCC-EEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCch
Q 004020 268 RDN-QLTGIVPSSLVNLHSLA-VVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPA 345 (779)
Q Consensus 268 ~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (779)
++| ++++..+..|..+++|+ .|+|++|+++...+..+.
T Consensus 138 ~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~---------------------------------------- 177 (239)
T 2xwt_C 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN---------------------------------------- 177 (239)
T ss_dssp ESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT----------------------------------------
T ss_pred CCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC----------------------------------------
Confidence 777 77665556677777777 777777777633222110
Q ss_pred hcccccCCCCCCCCCCCccccCCCCCeEEEEccCcc-cccccccccccc-ccCCeEeccCccccccCCccCCCCCCCCce
Q 004020 346 VLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLG-LSGTISSNFSRL-TSLRQLMLSGNELTGTIPKELTTLPSLEML 423 (779)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~g~~p~~~~~l-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 423 (779)
. .+|+.|+|++|+ +++..+..|..+ ++|+.|+|++|+|+ .+|.. .+++|+.|
T Consensus 178 ----------------------~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L 231 (239)
T 2xwt_C 178 ----------------------G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKEL 231 (239)
T ss_dssp ----------------------T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEE
T ss_pred ----------------------C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCcee
Confidence 0 268888888884 886667788889 99999999999999 66665 67889999
Q ss_pred eccCCc
Q 004020 424 DVSNNH 429 (779)
Q Consensus 424 ~Ls~N~ 429 (779)
+++++.
T Consensus 232 ~l~~~~ 237 (239)
T 2xwt_C 232 IARNTW 237 (239)
T ss_dssp ECTTC-
T ss_pred eccCcc
Confidence 998763
No 334
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=6.2e-22 Score=202.29 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=110.4
Q ss_pred cEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEc
Q 004020 115 QEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHL 194 (779)
Q Consensus 115 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L 194 (779)
++++++++.++.+|.... ++|++|+|++|++.+ ..+..|.++++|++|+|++|.+++..|..+. .+++|++|+|
T Consensus 17 ~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L 90 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGL 90 (251)
T ss_dssp TEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEEC
T ss_pred eEEecCCCCccccCCCCC---CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhc--cCCcCCEEEC
Confidence 344444444444443321 244444444444433 3333444444444555555555555555564 6788888888
Q ss_pred cCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCccc
Q 004020 195 AFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLT 273 (779)
Q Consensus 195 ~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~ 273 (779)
++|+|++..+..+. .+++|++|+|++|+|++.++. +..+++|++|+|++|+|+
T Consensus 91 ~~n~l~~~~~~~~~--------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 91 ANNQLASLPLGVFD--------------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TTSCCCCCCTTTTT--------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcccccChhHhc--------------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 88888865555443 588999999999999988876 788999999999999999
Q ss_pred cccChhhhCCCCCCEEEccCccccccCCCCCC
Q 004020 274 GIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNS 305 (779)
Q Consensus 274 ~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 305 (779)
+..+..|..+++|++|+|++|++++.++..+.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence 87778999999999999999999998886554
No 335
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=1.6e-22 Score=217.43 Aligned_cols=201 Identities=15% Similarity=0.168 Sum_probs=152.9
Q ss_pred EEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCC-CCcccccCCCCccE-EEcccC
Q 004020 70 IQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTS-VPSDFFKGLTSLQT-ISLDYN 146 (779)
Q Consensus 70 l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~-L~Ls~N 146 (779)
++.++++++ .+|..+ .++|++|+|++|+|+.+++ +|.++++|++|+|++|++.+ +++++|.++++|++ ++++.|
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 444567777 678766 3689999999999998887 79999999999999999754 78888999998775 667788
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccC-CCCCCcCCCccccCCcceeeccCCCCCCC
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAF-NFLQGPIPLSFGKSSIQTLWLNGQKGDSK 225 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~L~~l~l~~n~~~~~ 225 (779)
++.. ..|..|..+++|++|++++|.+++..+..+. ...++..|++.+ |+++...+..+..
T Consensus 91 ~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~l~~l~l~~~~~i~~l~~~~f~~---------------- 151 (350)
T 4ay9_X 91 NLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKI--HSLQKVLLDIQDNINIHTIERNSFVG---------------- 151 (350)
T ss_dssp TCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCTTC--CBSSCEEEEEESCTTCCEECTTSSTT----------------
T ss_pred cccc-cCchhhhhccccccccccccccccCCchhhc--ccchhhhhhhccccccccccccchhh----------------
Confidence 8876 5678888999999999999998865555543 466777888865 5566333333321
Q ss_pred CCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccC-CccccccChhhhCCCCCCEEEccCccccccCC
Q 004020 226 LNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRD-NQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 226 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
....++.|+|++|+|+..++......+|++|++.+ |.++...++.|..+++|++|||++|+|+..++
T Consensus 152 ---------~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 152 ---------LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp ---------SBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ---------cchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 12468889999999998777766677899999975 66664444678889999999999998875443
No 336
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.88 E-value=2e-22 Score=211.88 Aligned_cols=148 Identities=22% Similarity=0.384 Sum_probs=127.3
Q ss_pred hhcCCccc-ceecccccEEEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHH-HcCCCCccceEeeEEEe----C
Q 004020 588 VTNNFSEE-NVLGRGGFGTVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVL-TKVRHRHLVGLLGYCLD----G 660 (779)
Q Consensus 588 ~~~~~~~~-~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~~~~~~----~ 660 (779)
+.++|.+. +.||+|+||.||+|... +++.||+|++... ..+.+|++++ +..+||||+++++++.. .
T Consensus 15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~ 87 (299)
T 3m2w_A 15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGR 87 (299)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCC
Confidence 34677776 78999999999999874 6899999998642 3567888888 55689999999999987 6
Q ss_pred CeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcC---CCcEEE
Q 004020 661 NERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGD---DMRAKV 737 (779)
Q Consensus 661 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~---~~~~kl 737 (779)
...++||||+++++|.+++..... ..+++..++.++.||+.||+|||+ .+|+||||||+||+++. ++.+||
T Consensus 88 ~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl 161 (299)
T 3m2w_A 88 KCLLIVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKL 161 (299)
T ss_dssp EEEEEEECCCCSCBHHHHHHHCTT---CCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEE
T ss_pred ceEEEEEeecCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEE
Confidence 678999999999999999976432 358999999999999999999997 89999999999999997 789999
Q ss_pred EeeccceecCC
Q 004020 738 ADFGLVRLAPD 748 (779)
Q Consensus 738 ~DFG~a~~~~~ 748 (779)
+|||+++....
T Consensus 162 ~Dfg~a~~~~~ 172 (299)
T 3m2w_A 162 TDFGFAKETTG 172 (299)
T ss_dssp CCCTTCEECTT
T ss_pred ecccccccccc
Confidence 99999987654
No 337
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.6e-22 Score=211.49 Aligned_cols=176 Identities=24% Similarity=0.381 Sum_probs=128.7
Q ss_pred ccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCc
Q 004020 85 LNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQ 164 (779)
Q Consensus 85 l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~ 164 (779)
+.++++|++|++++|.++.. +.+..+++|++|+|++|+++.+++ +..+++|++|+|++|++.+ + ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~--~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC--C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC--c-hhhcCCCCCC
Confidence 34567788888888877753 467778888888888888887776 7778888888888888765 3 3577788888
Q ss_pred eEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEe
Q 004020 165 RFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWL 244 (779)
Q Consensus 165 ~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L 244 (779)
.|++++|++++. +. +. .+++|++|+|++|++++..+ + ..+++|+.|+|
T Consensus 111 ~L~l~~n~l~~~-~~-l~--~l~~L~~L~l~~n~l~~~~~--l--------------------------~~l~~L~~L~l 158 (308)
T 1h6u_A 111 TLDLTSTQITDV-TP-LA--GLSNLQVLYLDLNQITNISP--L--------------------------AGLTNLQYLSI 158 (308)
T ss_dssp EEECTTSCCCCC-GG-GT--TCTTCCEEECCSSCCCCCGG--G--------------------------GGCTTCCEEEC
T ss_pred EEECCCCCCCCc-hh-hc--CCCCCCEEECCCCccCcCcc--c--------------------------cCCCCccEEEc
Confidence 888888887753 33 43 67788888888888774322 2 25777888888
Q ss_pred ecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCC
Q 004020 245 HGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 245 ~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..|
T Consensus 159 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 159 GNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred cCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence 8888876554 7777888888888888875433 7778888888888888876654
No 338
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=8e-25 Score=234.28 Aligned_cols=211 Identities=15% Similarity=0.244 Sum_probs=145.0
Q ss_pred CCCcceeeEeCCCCcEEEEEecCCCccccCCccccCC--CCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCC-C
Q 004020 52 DPCKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSL--SSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSV-P 128 (779)
Q Consensus 52 ~~C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~-~ 128 (779)
-|..|.++.|+ ...++.++++++++. +..+..+ ++++.|++++|.+.+.++.+.++++|++|+|++|.++.. .
T Consensus 35 vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 35 VCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp SCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 34479999887 346889999999887 5667777 899999999999999888888899999999999988764 5
Q ss_pred cccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCc-eeEee-cCCCccCCCCCcccEEEccCC-CCCCc-CC
Q 004020 129 SDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGA-NITGT-IPDFLGGDTIPGLMHLHLAFN-FLQGP-IP 204 (779)
Q Consensus 129 ~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~~l~~L~~L~L~~N-~l~~~-~p 204 (779)
+..+..+++|++|+|++|++.+ ..+..+..+++|++|++++| .+++. ++..+. .+++|++|+|++| .+++. ++
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS--SCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH--HCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh--cCCCCCEEcCCCCCCcChHHHH
Confidence 5567888888888888888754 45666777777777777777 45542 444443 4667777777777 66532 22
Q ss_pred CccccCCcceeeccCCCCCCCCCCchhhhcCCC-CccEEEeecC--ccc-CCCC-CCCCCCCCcEEEccCCc-cccccCh
Q 004020 205 LSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMT-SLTQLWLHGN--SFT-GPLP-DLSGLSSLQDFSVRDNQ-LTGIVPS 278 (779)
Q Consensus 205 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~-~L~~L~L~~N--~l~-~~~~-~~~~l~~L~~L~l~~N~-l~~~~p~ 278 (779)
. .+..++ +|++|+|++| .++ +.++ .+..+++|+.|++++|. +++..+.
T Consensus 188 ~--------------------------~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 188 V--------------------------AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp H--------------------------HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred H--------------------------HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 2 123456 6666666666 333 2223 24455666666666666 5555555
Q ss_pred hhhCCCCCCEEEccCcc
Q 004020 279 SLVNLHSLAVVNLTNNL 295 (779)
Q Consensus 279 ~l~~l~~L~~L~Ls~N~ 295 (779)
.+..+++|+.|+|++|.
T Consensus 242 ~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGCTTCCEEECTTCT
T ss_pred HHhCCCCCCEeeCCCCC
Confidence 66666666666666654
No 339
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3e-25 Score=242.36 Aligned_cols=251 Identities=18% Similarity=0.221 Sum_probs=168.0
Q ss_pred cCCccccCCCCCcEEEcccCccccCCC-----CCCCCCCccEEecCCCCCCCCC---ccc-------ccCCCCccEEEcc
Q 004020 80 TLPKELNSLSSLTVLEVMKNKLTGQIP-----SLSGLSSLQEVLFDDNNFTSVP---SDF-------FKGLTSLQTISLD 144 (779)
Q Consensus 80 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~l~~N~l~~~~---~~~-------~~~l~~L~~L~Ls 144 (779)
.++..+..+++|++|+|++|+|+...+ .+..+++|++|+|++|.+..+. +.. +..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 567788889999999999999987532 4788999999999997665432 222 3678888899998
Q ss_pred cCCCCCC---CCcccccCCCCCceEeccCceeEeecCCCccC--CCC---------CcccEEEccCCCCC-CcCCCcccc
Q 004020 145 YNSFDSW---VIPESLKDATGLQRFSANGANITGTIPDFLGG--DTI---------PGLMHLHLAFNFLQ-GPIPLSFGK 209 (779)
Q Consensus 145 ~N~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~--~~l---------~~L~~L~L~~N~l~-~~~p~~~~~ 209 (779)
+|++... .+|..+..+++|+.|+|++|.++...+..+.. ..+ ++|++|+|++|+++ +.+|. +
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l-- 179 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE-W-- 179 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH-H--
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH-H--
Confidence 8888642 25567777888888888888776443333320 012 67777777777765 22221 0
Q ss_pred CCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCccc--C---CCC-CCCCCCCCcEEEccCCccc----cccChh
Q 004020 210 SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFT--G---PLP-DLSGLSSLQDFSVRDNQLT----GIVPSS 279 (779)
Q Consensus 210 ~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~---~~~-~~~~l~~L~~L~l~~N~l~----~~~p~~ 279 (779)
...+..+++|++|+|++|+++ | ..+ .+..+++|+.|+|++|.|+ +.+|..
T Consensus 180 --------------------~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 180 --------------------AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp --------------------HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred --------------------HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 123445677777777777776 2 344 5666777777777777775 556777
Q ss_pred hhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCC
Q 004020 280 LVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNS 359 (779)
Q Consensus 280 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (779)
+..+++|+.|+|++|++++....
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~--------------------------------------------------------- 262 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAA--------------------------------------------------------- 262 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHH---------------------------------------------------------
T ss_pred HccCCCcCEEECCCCCCchhhHH---------------------------------------------------------
Confidence 77777777777777766532110
Q ss_pred CCCccccCCCCCeEEEEccCccccccccccc--cccccCCeEeccCccccc----cCCccC-CCCCCCCceeccCCcccc
Q 004020 360 DWKGVSCDAGGNITVVNLKNLGLSGTISSNF--SRLTSLRQLMLSGNELTG----TIPKEL-TTLPSLEMLDVSNNHLFG 432 (779)
Q Consensus 360 ~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~--~~l~~L~~L~Ls~N~l~g----~iP~~l-~~l~~L~~L~Ls~N~l~g 432 (779)
.+|..+ +.+++|+.|+|++|+|++ .+|..+ .++++|++|+|++|++++
T Consensus 263 -------------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 263 -------------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp -------------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred -------------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 134444 336777777777777776 477766 557778888888887776
Q ss_pred cCC
Q 004020 433 KVP 435 (779)
Q Consensus 433 ~iP 435 (779)
..|
T Consensus 318 ~~~ 320 (386)
T 2ca6_A 318 EDD 320 (386)
T ss_dssp TSH
T ss_pred chh
Confidence 654
No 340
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=1.5e-22 Score=228.84 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=162.1
Q ss_pred CCCCC-----cceee-EeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCC
Q 004020 50 DPDPC-----KWKHI-QCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNN 123 (779)
Q Consensus 50 ~~~~C-----~w~gv-~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~ 123 (779)
+.++| .|.++ .|. .++++.|+|++|+|++ +|..+. ++|++|+|++|+|+.+ | ..+++|++|+|++|+
T Consensus 39 ~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~i-p--~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISL-P--ELPASLEYLDACDNR 111 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCC-C--CCCTTCCEEECCSSC
T ss_pred cCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCccc-c--cccCCCCEEEccCCC
Confidence 45677 79999 786 3589999999999997 887774 7999999999999954 4 568999999999999
Q ss_pred CCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcC
Q 004020 124 FTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPI 203 (779)
Q Consensus 124 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~ 203 (779)
|+++|. +.+ +|++|+|++|+|++ +|. .+++|+.|++++|.|++ +|. .+++|++|+|++|+|++ +
T Consensus 112 l~~ip~--l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 112 LSTLPE--LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp CSCCCC--CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-C
T ss_pred CCCcch--hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCC-c
Confidence 999887 554 99999999999987 565 68999999999999986 665 26789999999999996 6
Q ss_pred CCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCC-------cEEEccCCcccccc
Q 004020 204 PLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSL-------QDFSVRDNQLTGIV 276 (779)
Q Consensus 204 p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L-------~~L~l~~N~l~~~~ 276 (779)
|. ++ ++|+.|+|++|+|+..++ +.. +| +.|+|++|+|+ .+
T Consensus 176 p~-l~----------------------------~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~l 222 (571)
T 3cvr_A 176 PE-LP----------------------------ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HI 222 (571)
T ss_dssp CC-CC----------------------------TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CC
T ss_pred ch-hh----------------------------CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ec
Confidence 65 42 678888888888885444 543 66 88999999998 57
Q ss_pred ChhhhCCCCCCEEEccCccccccCCC
Q 004020 277 PSSLVNLHSLAVVNLTNNLFQGQTPK 302 (779)
Q Consensus 277 p~~l~~l~~L~~L~Ls~N~l~g~~p~ 302 (779)
|..+..+++|+.|+|++|+|++.+|.
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 88888899999999999999887775
No 341
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.88 E-value=1.2e-22 Score=210.56 Aligned_cols=156 Identities=14% Similarity=0.063 Sum_probs=122.2
Q ss_pred HHHHHHhhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccCh----------------hHHHHHHHHHHHHHcC
Q 004020 582 IQVLRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSE----------------KGFAEFKSEIAVLTKV 645 (779)
Q Consensus 582 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------~~~~~~~~E~~~l~~l 645 (779)
+..+......|.+.+.||+|+||.||+|+..+|+.||+|.++...... .....+.+|+++++++
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 344455566788889999999999999988779999999986432111 1346789999999999
Q ss_pred CCCccceEeeEEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCC
Q 004020 646 RHRHLVGLLGYCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPS 725 (779)
Q Consensus 646 ~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~ 725 (779)
+| +++.+++.. +..++||||+++++|.+ +.. .....++.|++.||+|||+ .+|+||||||+
T Consensus 162 ~~---~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-----------~~~~~i~~qi~~~l~~lH~---~giiHrDlkp~ 222 (282)
T 1zar_A 162 QG---LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-----------ENPDEVLDMILEEVAKFYH---RGIVHGDLSQY 222 (282)
T ss_dssp TT---SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-----------SCHHHHHHHHHHHHHHHHH---TTEECSCCSTT
T ss_pred cC---CCcCeEEec-cceEEEEEecCCCcHHH-cch-----------hhHHHHHHHHHHHHHHHHH---CCCEeCCCCHH
Confidence 94 556665443 55699999999999987 411 1234799999999999996 89999999999
Q ss_pred CEEEcCCCcEEEEeeccceecCCCCCcccccccccCCcccccccccc
Q 004020 726 NILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAAE 772 (779)
Q Consensus 726 NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~~ 772 (779)
|||++ ++.+||+|||+|+.. ..|+|||++.+
T Consensus 223 NILl~-~~~vkl~DFG~a~~~---------------~~~~a~e~l~r 253 (282)
T 1zar_A 223 NVLVS-EEGIWIIDFPQSVEV---------------GEEGWREILER 253 (282)
T ss_dssp SEEEE-TTEEEECCCTTCEET---------------TSTTHHHHHHH
T ss_pred HEEEE-CCcEEEEECCCCeEC---------------CCCCHHHHHHH
Confidence 99999 999999999998643 34678887753
No 342
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.87 E-value=5.6e-23 Score=225.93 Aligned_cols=172 Identities=21% Similarity=0.232 Sum_probs=126.4
Q ss_pred cCCcccceecccccEEEEEEEEc-CCcEEEEEEecccc-cChhHHHHHHHHHHHHHcCCC-Cccc---------e-----
Q 004020 590 NNFSEENVLGRGGFGTVYKGELH-DGTKIAVKRMESAV-VSEKGFAEFKSEIAVLTKVRH-RHLV---------G----- 652 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h-~niv---------~----- 652 (779)
..|...+.||+|+||.||+|++. +|+.||||++.... ......+.+.+|+.+++.++| ++.. .
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 45778899999999999999854 79999999987332 222335779999999999987 2211 1
Q ss_pred -------EeeEEEe-----CCeEEEEEEecCCCChhhHhhhcc--cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcE
Q 004020 653 -------LLGYCLD-----GNERLLVYEYMPQGTLSRHLFNRK--EEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFI 718 (779)
Q Consensus 653 -------~~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~iv 718 (779)
+..++.. ....+++|+++ +++|.+++.... ......+++..++.++.||++||+|||+ ++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcc
Confidence 1111111 12356777765 689998884221 1112357788999999999999999996 8999
Q ss_pred EcCCCCCCEEEcCCCcEEEEeeccceecCCCCCcccccccccCCccccccccc
Q 004020 719 HRDLKPSNILLGDDMRAKVADFGLVRLAPDNGKHSIETRLAGTFGYLAPEYAA 771 (779)
Q Consensus 719 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~APE~l~ 771 (779)
||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++.
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~ 280 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTA 280 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhh
Confidence 9999999999999999999999998875432 234567 9999999984
No 343
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.6e-22 Score=197.83 Aligned_cols=183 Identities=23% Similarity=0.362 Sum_probs=133.4
Q ss_pred CcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccc
Q 004020 54 CKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFF 132 (779)
Q Consensus 54 C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 132 (779)
|.|.+|.|+. ++++ .+|..+ .++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|
T Consensus 7 C~~~~v~c~~-----------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (208)
T 2o6s_A 7 CSGTTVECYS-----------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72 (208)
T ss_dssp EETTEEECCS-----------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred ECCCEEEecC-----------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc
Confidence 6899988874 3344 455544 3589999999999998777 58899999999999999999999888
Q ss_pred cCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCc
Q 004020 133 KGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSI 212 (779)
Q Consensus 133 ~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L 212 (779)
..+++|++|+|++|++.+ ..+..|..+++|++|++++|++++..+..+. .+++|++|+|++|++++..+..+.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~---- 145 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQLKSVPDGVFD---- 145 (208)
T ss_dssp TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTT----
T ss_pred CCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhc--cCCcCCEEECCCCccceeCHHHhc----
Confidence 999999999999999975 4455667777777777777777765555554 567777777777777754443333
Q ss_pred ceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCC
Q 004020 213 QTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHS 285 (779)
Q Consensus 213 ~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~ 285 (779)
.+++|+.|+|++|.+.+. +++|++|+++.|+++|.+|.+++.++.
T Consensus 146 ----------------------~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 ----------------------RLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----------------------TCTTCCEEECCSCCBCCC------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----------------------cCCCccEEEecCCCeecC------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 466677777777765542 345666667777777777766665543
No 344
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.9e-21 Score=208.97 Aligned_cols=242 Identities=14% Similarity=0.127 Sum_probs=172.0
Q ss_pred cEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCce-EeccC
Q 004020 92 TVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQR-FSANG 170 (779)
Q Consensus 92 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~-L~l~~ 170 (779)
++++-++|+|+.+|..+ .++|++|+|++|+|+.+++++|.++++|++|+|++|++.+...+..|.++++|.. +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56888999999766555 3689999999999999999999999999999999999866344567888888765 66677
Q ss_pred ceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeec-Ccc
Q 004020 171 ANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHG-NSF 249 (779)
Q Consensus 171 n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l 249 (779)
|+++...|+.|. .+++|++|++++|+|++..+..+. ...++..|++.+ |++
T Consensus 90 N~l~~l~~~~f~--~l~~L~~L~l~~n~l~~~~~~~~~--------------------------~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 90 NNLLYINPEAFQ--NLPNLQYLLISNTGIKHLPDVHKI--------------------------HSLQKVLLDIQDNINI 141 (350)
T ss_dssp TTCCEECTTSBC--CCTTCCEEEEEEECCSSCCCCTTC--------------------------CBSSCEEEEEESCTTC
T ss_pred CcccccCchhhh--hccccccccccccccccCCchhhc--------------------------ccchhhhhhhcccccc
Confidence 889887788876 788999999999999855443332 345677788866 466
Q ss_pred cCCCC-CCCCC-CCCcEEEccCCccccccChhhhCCCCCCEEEccC-ccccccCCCCCCCcccccccCCCCcccCCCCcc
Q 004020 250 TGPLP-DLSGL-SSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTN-NLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVA 326 (779)
Q Consensus 250 ~~~~~-~~~~l-~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (779)
....+ .|..+ ..++.|+|++|+|+. +|.......+|+.|++++ |.++...++.+..
T Consensus 142 ~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~-------------------- 200 (350)
T 4ay9_X 142 HTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHG-------------------- 200 (350)
T ss_dssp CEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT--------------------
T ss_pred ccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhcc--------------------
Confidence 65555 36655 468889999999884 555555667788888875 5555433332221
Q ss_pred cCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccc
Q 004020 327 CDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNEL 406 (779)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l 406 (779)
.++|+.|+|++|+|+...+..|.+ |+.|.+.++.-
T Consensus 201 ------------------------------------------l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~ 235 (350)
T 4ay9_X 201 ------------------------------------------ASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYN 235 (350)
T ss_dssp ------------------------------------------EECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTT
T ss_pred ------------------------------------------CcccchhhcCCCCcCccChhhhcc---chHhhhccCCC
Confidence 126788888888888544434444 44444333332
Q ss_pred cccCCccCCCCCCCCceeccCCcc
Q 004020 407 TGTIPKELTTLPSLEMLDVSNNHL 430 (779)
Q Consensus 407 ~g~iP~~l~~l~~L~~L~Ls~N~l 430 (779)
-..+| .+..+++|+.++++++.-
T Consensus 236 l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 236 LKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCCCC-CTTTCCSCCEEECSCHHH
T ss_pred cCcCC-CchhCcChhhCcCCCCcc
Confidence 33677 477788888888876654
No 345
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=5.6e-21 Score=216.04 Aligned_cols=195 Identities=24% Similarity=0.349 Sum_probs=115.0
Q ss_pred CccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEE
Q 004020 113 SLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHL 192 (779)
Q Consensus 113 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L 192 (779)
+|+.|+|++|+|+++|...+ ++|++|+|++|+|.. +| ..+++|+.|++++|+|++ +|. +. . +|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~--~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LP--A--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CC--T--TCCEE
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hh--c--CCCEE
Confidence 34444444444444433321 344444444444432 23 223444444444444444 454 43 1 67777
Q ss_pred EccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCcc
Q 004020 193 HLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQL 272 (779)
Q Consensus 193 ~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l 272 (779)
+|++|+|++ +|. .+++|+.|+|++|+|++. |. .+++|++|+|++|+|
T Consensus 126 ~Ls~N~l~~-lp~-----------------------------~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 126 DVDNNQLTM-LPE-----------------------------LPALLEYINADNNQLTML-PE--LPTSLEVLSVRNNQL 172 (571)
T ss_dssp ECCSSCCSC-CCC-----------------------------CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCC
T ss_pred ECCCCcCCC-CCC-----------------------------cCccccEEeCCCCccCcC-CC--cCCCcCEEECCCCCC
Confidence 777777765 443 146677777777777763 33 467777888888877
Q ss_pred ccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccC
Q 004020 273 TGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWK 352 (779)
Q Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (779)
++ +|. |. ++|+.|+|++|+|+ .+|.+ .. . +
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~~-~~-~--L----------------------------------------- 202 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPAV-PV-R--N----------------------------------------- 202 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCCC-C-----------------------------------------------
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhhH-HH-h--h-----------------------------------------
Confidence 75 566 55 77888888888877 33321 10 0 0
Q ss_pred CCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCC
Q 004020 353 GNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLP 418 (779)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 418 (779)
......|+.|+|++|+|+ .+|..+..+++|+.|+|++|.|+|.+|..+..++
T Consensus 203 -------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 203 -------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 000113578888888887 4777777788888888888888888887766654
No 346
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=6.4e-21 Score=188.80 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=45.4
Q ss_pred cEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCc
Q 004020 92 TVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGA 171 (779)
Q Consensus 92 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n 171 (779)
+.++.+++.++..+..+ .++|++|+|++|+++.+++..|.++++|++|+|++|++.+ ..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCC
Confidence 45666666666554433 2466777777777776666666666666666666666653 22333444444444444444
Q ss_pred eeE
Q 004020 172 NIT 174 (779)
Q Consensus 172 ~l~ 174 (779)
+++
T Consensus 87 ~l~ 89 (208)
T 2o6s_A 87 QLQ 89 (208)
T ss_dssp CCC
T ss_pred cCC
Confidence 444
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.1e-23 Score=221.86 Aligned_cols=251 Identities=14% Similarity=0.166 Sum_probs=193.6
Q ss_pred CCCcEEEcccCccccCCCCCCCC--CCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceE
Q 004020 89 SSLTVLEVMKNKLTGQIPSLSGL--SSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRF 166 (779)
Q Consensus 89 ~~L~~L~Ls~N~l~~~~~~~~~l--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L 166 (779)
..++.|++++|.+.. ..+..+ ++++.|++++|.+++.++. +..+++|++|+|++|.+....++..+..+++|+.|
T Consensus 47 ~~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 348899999998762 245666 8899999999999988877 44789999999999988653377788899999999
Q ss_pred eccCceeEeecCCCccCCCCCcccEEEccCC-CCCCc-CCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEe
Q 004020 167 SANGANITGTIPDFLGGDTIPGLMHLHLAFN-FLQGP-IPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWL 244 (779)
Q Consensus 167 ~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L 244 (779)
++++|.+++..|..++ .+++|++|+|++| .+++. ++. .+..+++|++|+|
T Consensus 124 ~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~--------------------------~~~~~~~L~~L~l 175 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQT--------------------------LLSSCSRLDELNL 175 (336)
T ss_dssp ECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHH--------------------------HHHHCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHH--------------------------HHhcCCCCCEEcC
Confidence 9999998888888776 6889999999999 57642 222 2446899999999
Q ss_pred ecC-cccCC-CC-CCCCCC-CCcEEEccCC--ccc-cccChhhhCCCCCCEEEccCcc-ccccCCCCCCCcccccccCCC
Q 004020 245 HGN-SFTGP-LP-DLSGLS-SLQDFSVRDN--QLT-GIVPSSLVNLHSLAVVNLTNNL-FQGQTPKFNSPVRFDMAKGSN 316 (779)
Q Consensus 245 ~~N-~l~~~-~~-~~~~l~-~L~~L~l~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~ 316 (779)
++| .+++. ++ .+..++ +|++|++++| .++ +.+|..+..+++|+.|+|++|. +++..+..+
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l------------ 243 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF------------ 243 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG------------
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH------------
Confidence 999 99863 34 377788 9999999999 555 5678888999999999999998 665433211
Q ss_pred CcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCcc-cccccccccccccc
Q 004020 317 SFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLG-LSGTISSNFSRLTS 395 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~g~~p~~~~~l~~ 395 (779)
...++|+.|+|++|. +.......++++++
T Consensus 244 --------------------------------------------------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 244 --------------------------------------------------FQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp --------------------------------------------------GGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred --------------------------------------------------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 112479999999995 33333336888999
Q ss_pred CCeEeccCccccccCCc-cCCCC-CCCCceeccCCcccccCCCC
Q 004020 396 LRQLMLSGNELTGTIPK-ELTTL-PSLEMLDVSNNHLFGKVPNF 437 (779)
Q Consensus 396 L~~L~Ls~N~l~g~iP~-~l~~l-~~L~~L~Ls~N~l~g~iP~~ 437 (779)
|+.|+|++| +|. .+..+ ..|..|++++|+++|..|..
T Consensus 274 L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 274 LKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 999999999 333 23334 34888889999999998863
No 348
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=7.2e-23 Score=221.27 Aligned_cols=263 Identities=16% Similarity=0.198 Sum_probs=196.7
Q ss_pred EEEcccCccccCCCCCCC-CCCccEEecCCCCCCCCCc----ccccCCC-CccEEEcccCCCCCCCCcccccCC-----C
Q 004020 93 VLEVMKNKLTGQIPSLSG-LSSLQEVLFDDNNFTSVPS----DFFKGLT-SLQTISLDYNSFDSWVIPESLKDA-----T 161 (779)
Q Consensus 93 ~L~Ls~N~l~~~~~~~~~-l~~L~~L~l~~N~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~~p~~~~~l-----~ 161 (779)
+++|+.|.+++.+|.+.. .++|++|+|++|+++.++. ..|..++ +|++|+|++|++.. ..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCC
Confidence 578999999999886544 4559999999999999998 7888999 99999999999976 456666664 8
Q ss_pred CCceEeccCceeEeecCCCccC--CCC-CcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcC-CC
Q 004020 162 GLQRFSANGANITGTIPDFLGG--DTI-PGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQN-MT 237 (779)
Q Consensus 162 ~L~~L~l~~n~l~~~~p~~~~~--~~l-~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-l~ 237 (779)
+|+.|+|++|.+++..+..++. ..+ ++|++|+|++|++++..+..++ ..+.. .+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----------------------~~l~~~~~ 138 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK----------------------QAFSNLPA 138 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----------------------HHHTTSCT
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH----------------------HHHHhCCC
Confidence 9999999999998766664431 023 7899999999999865554443 12334 36
Q ss_pred CccEEEeecCcccCCCC-----CCCCCC-CCcEEEccCCccccccChhhhC----C-CCCCEEEccCccccccCCCCCCC
Q 004020 238 SLTQLWLHGNSFTGPLP-----DLSGLS-SLQDFSVRDNQLTGIVPSSLVN----L-HSLAVVNLTNNLFQGQTPKFNSP 306 (779)
Q Consensus 238 ~L~~L~L~~N~l~~~~~-----~~~~l~-~L~~L~l~~N~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~g~~p~~~~~ 306 (779)
+|++|+|++|.++.... .+..++ +|++|+|++|++++..+..+.. + ++|+.|+|++|++++.....
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~--- 215 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE--- 215 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH---
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH---
Confidence 89999999999986433 134444 8999999999998777765554 4 59999999999987532110
Q ss_pred cccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccc
Q 004020 307 VRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTI 386 (779)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~ 386 (779)
+.... ....++|+.|+|++|.+++..
T Consensus 216 ---------------------------l~~~l---------------------------~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 216 ---------------------------LAYIF---------------------------SSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp ---------------------------HHHHH---------------------------HHSCTTCCEEECCSSCCCCCC
T ss_pred ---------------------------HHHHH---------------------------hcCCCCceEEECcCCCCCcHH
Confidence 00000 001137899999999998755
Q ss_pred c----ccccccccCCeEeccCccccc-------cCCccCCCCCCCCceeccCCcccccCC
Q 004020 387 S----SNFSRLTSLRQLMLSGNELTG-------TIPKELTTLPSLEMLDVSNNHLFGKVP 435 (779)
Q Consensus 387 p----~~~~~l~~L~~L~Ls~N~l~g-------~iP~~l~~l~~L~~L~Ls~N~l~g~iP 435 (779)
+ ..+..+++|+.|+|++|++++ .++..+..+++|++|||++|++.+..|
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4 445778999999999999553 345578899999999999999987644
No 349
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.84 E-value=7.1e-22 Score=231.77 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=113.5
Q ss_pred ChhHHHHHHHHHHHcCC---CCCCCCCC--CCCCcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCc
Q 004020 26 SSSDAAAMQALKTSLGN---PASLGWTD--PDPCKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNK 100 (779)
Q Consensus 26 ~~~~~~~l~~~k~~~~~---~~~~~w~~--~~~C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~ 100 (779)
...+.++|.++..+... .....|.. ...+.|.++.++. .+++.|+|.++++.. ++. ..|+.++|+.|.
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~ 202 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYS 202 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-CccceEEeeCCCCCc-chh-----hHhhcCccCccc
Confidence 35567888888877621 22235643 3467899998874 689999999999985 333 245666666666
Q ss_pred cccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCC
Q 004020 101 LTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDF 180 (779)
Q Consensus 101 l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 180 (779)
|.+ ++++.|++. ++++.|..+++|++|+|++|++.. +|..+.++++|++|+|++|.|+ .+|..
T Consensus 203 i~~-------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 265 (727)
T 4b8c_D 203 IDE-------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAE 265 (727)
T ss_dssp ---------------------------------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGG
T ss_pred ccC-------------cccccccee-cChhhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChh
Confidence 553 234455555 455567777777777777777753 5656667777777777777777 67777
Q ss_pred ccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCC
Q 004020 181 LGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLS 260 (779)
Q Consensus 181 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 260 (779)
|+ .+++|++|+|++|+|+ .+|..++ .+++|++|+|++|.|+..++.|..++
T Consensus 266 ~~--~l~~L~~L~Ls~N~l~-~lp~~~~--------------------------~l~~L~~L~L~~N~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 266 IK--NLSNLRVLDLSHNRLT-SLPAELG--------------------------SCFQLKYFYFFDNMVTTLPWEFGNLC 316 (727)
T ss_dssp GG--GGTTCCEEECTTSCCS-SCCSSGG--------------------------GGTTCSEEECCSSCCCCCCSSTTSCT
T ss_pred hh--CCCCCCEEeCcCCcCC-ccChhhc--------------------------CCCCCCEEECCCCCCCccChhhhcCC
Confidence 75 6888888888888888 6677665 57888888888888875555688888
Q ss_pred CCcEEEccCCccccccChhhhCCCC-CCEEEccCccccccCCC
Q 004020 261 SLQDFSVRDNQLTGIVPSSLVNLHS-LAVVNLTNNLFQGQTPK 302 (779)
Q Consensus 261 ~L~~L~l~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~~p~ 302 (779)
+|+.|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|.
T Consensus 317 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 8888888888888888887766432 23467888888877775
No 350
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.5e-22 Score=220.87 Aligned_cols=206 Identities=20% Similarity=0.278 Sum_probs=161.2
Q ss_pred CcEEEEEecCCCccccCC----ccccCCCCCcEEEcccC---ccccCCC-C-------CCCCCCccEEecCCCCCCC---
Q 004020 65 NRVTRIQIGGQNIEGTLP----KELNSLSSLTVLEVMKN---KLTGQIP-S-------LSGLSSLQEVLFDDNNFTS--- 126 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p----~~l~~l~~L~~L~Ls~N---~l~~~~~-~-------~~~l~~L~~L~l~~N~l~~--- 126 (779)
.+++.|+|++|++++..+ ..|..+++|++|+|++| ++++.+| . +..+++|++|+|++|+++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 469999999999987644 45779999999999996 4555544 3 3789999999999999998
Q ss_pred -CCcccccCCCCccEEEcccCCCCCC---CCcccccCC---------CCCceEeccCceeE-eecC---CCccCCCCCcc
Q 004020 127 -VPSDFFKGLTSLQTISLDYNSFDSW---VIPESLKDA---------TGLQRFSANGANIT-GTIP---DFLGGDTIPGL 189 (779)
Q Consensus 127 -~~~~~~~~l~~L~~L~Ls~N~l~~~---~~p~~~~~l---------~~L~~L~l~~n~l~-~~~p---~~~~~~~l~~L 189 (779)
..+..+..+++|++|+|++|.+... .++..+..+ ++|+.|++++|+++ +.+| ..+. .+++|
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L 189 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ--SHRLL 189 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH--hCCCc
Confidence 3455688999999999999998531 123334444 89999999999997 4444 3444 57899
Q ss_pred cEEEccCCCCCC-----cCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCccc----CCCC-CCCCC
Q 004020 190 MHLHLAFNFLQG-----PIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFT----GPLP-DLSGL 259 (779)
Q Consensus 190 ~~L~L~~N~l~~-----~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~----~~~~-~~~~l 259 (779)
++|+|++|+++. ..|. .+..+++|+.|+|++|.++ +.+| .+..+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~--------------------------~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLE--------------------------GLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHT--------------------------TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred CEEECcCCCCCHhHHHHHHHH--------------------------HhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 999999999972 1221 2446899999999999996 4455 48889
Q ss_pred CCCcEEEccCCccccc----cChhhhC--CCCCCEEEccCccccc
Q 004020 260 SSLQDFSVRDNQLTGI----VPSSLVN--LHSLAVVNLTNNLFQG 298 (779)
Q Consensus 260 ~~L~~L~l~~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~g 298 (779)
++|+.|+|++|+|++. +|..+.. +++|+.|+|++|++++
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 9999999999999876 5677744 7888888888887764
No 351
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=5.3e-20 Score=210.49 Aligned_cols=189 Identities=22% Similarity=0.354 Sum_probs=142.8
Q ss_pred EecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCC
Q 004020 71 QIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDS 150 (779)
Q Consensus 71 ~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 150 (779)
++..+.+...++ +..|++|+.|+|++|.|... +.+..+++|+.|+|++|+|+++++ +..+++|+.|+|++|+|.+
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 344444443332 45677777788888777644 467777888888888888877776 7778888888888888765
Q ss_pred CCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCch
Q 004020 151 WVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSV 230 (779)
Q Consensus 151 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~ 230 (779)
+| .+..+++|+.|+|++|++++ ++ .+. .+++|+.|+|++|+|++. ..
T Consensus 102 --l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~--~l~~L~~L~Ls~N~l~~l--~~------------------------ 148 (605)
T 1m9s_A 102 --LS-SLKDLKKLKSLSLEHNGISD-IN-GLV--HLPQLESLYLGNNKITDI--TV------------------------ 148 (605)
T ss_dssp --CT-TSTTCTTCCEEECTTSCCCC-CG-GGG--GCTTCSEEECCSSCCCCC--GG------------------------
T ss_pred --Ch-hhccCCCCCEEEecCCCCCC-Cc-ccc--CCCccCEEECCCCccCCc--hh------------------------
Confidence 23 67777788888888887774 33 343 578888888888888753 22
Q ss_pred hhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCC
Q 004020 231 AVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPK 302 (779)
Q Consensus 231 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 302 (779)
+..+++|+.|+|++|.|++.+| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++++.+..
T Consensus 149 --l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 149 --LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp --GGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred --hcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 3468999999999999998877 88899999999999999864 4689999999999999999875443
No 352
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=8.3e-20 Score=183.53 Aligned_cols=151 Identities=18% Similarity=0.258 Sum_probs=88.0
Q ss_pred CCCCCCCCcceeeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCcc
Q 004020 47 GWTDPDPCKWKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQ 115 (779)
Q Consensus 47 ~w~~~~~C~w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~ 115 (779)
.|.+.+.|.|++|.|+.. .+++.|+|++|++++..|..|..+++|++|+|++|+|+..++ .|.++++|+
T Consensus 12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 456678899999999752 235555555555555555555555555555555555554444 345555555
Q ss_pred EEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEcc
Q 004020 116 EVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLA 195 (779)
Q Consensus 116 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~ 195 (779)
+|+|++|+|+.+++..|..+++|++|+|++|+|.. +|..+..+++|+.|+|++|+|++..+..+. .+++|++|+|+
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~ 167 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFD--RLSSLTHAYLF 167 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECT
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHHHh--CCCCCCEEEee
Confidence 55555555555555555555555555555555542 455555555555555555555544444443 45555555555
Q ss_pred CCCCCC
Q 004020 196 FNFLQG 201 (779)
Q Consensus 196 ~N~l~~ 201 (779)
+|.+..
T Consensus 168 ~N~~~c 173 (229)
T 3e6j_A 168 GNPWDC 173 (229)
T ss_dssp TSCBCT
T ss_pred CCCccC
Confidence 555553
No 353
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=8.6e-20 Score=190.48 Aligned_cols=174 Identities=24% Similarity=0.364 Sum_probs=125.1
Q ss_pred cCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCce
Q 004020 86 NSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQR 165 (779)
Q Consensus 86 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~ 165 (779)
..+++|++|++++|.+... +.+..+++|++|+|++|+++++++ +..+++|++|+|++|++.+ + ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--C-hhhccCCCCCE
Confidence 4556677777777766644 446666777777777777776665 6667777777777777654 2 23666777777
Q ss_pred EeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEee
Q 004020 166 FSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLH 245 (779)
Q Consensus 166 L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~ 245 (779)
|++++|++++. +.+. .+++|++|+|++|++++. .. +..+++|+.|+|+
T Consensus 117 L~L~~n~i~~~--~~l~--~l~~L~~L~l~~n~l~~~--~~--------------------------l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLV--HLPQLESLYLGNNKITDI--TV--------------------------LSRLTKLDTLSLE 164 (291)
T ss_dssp EECTTSCCCCC--GGGG--GCTTCCEEECCSSCCCCC--GG--------------------------GGGCTTCSEEECC
T ss_pred EECCCCcCCCC--hhhc--CCCCCCEEEccCCcCCcc--hh--------------------------hccCCCCCEEEcc
Confidence 77777776642 2343 577888888888888743 22 3367889999999
Q ss_pred cCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccC
Q 004020 246 GNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQT 300 (779)
Q Consensus 246 ~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 300 (779)
+|++++.++ +..+++|+.|++++|+|++ +| .+..+++|+.|+|++|+++...
T Consensus 165 ~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 165 DNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCccccchh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 999888766 8888999999999999985 44 4888999999999999987643
No 354
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=7.3e-22 Score=228.34 Aligned_cols=323 Identities=17% Similarity=0.120 Sum_probs=220.9
Q ss_pred CcEEEEEecCCCcccc----CCccccCCCCCcEEEcccCccccCC----C-CCCCCCCccEEecCCCCCCCCCcccccCC
Q 004020 65 NRVTRIQIGGQNIEGT----LPKELNSLSSLTVLEVMKNKLTGQI----P-SLSGLSSLQEVLFDDNNFTSVPSDFFKGL 135 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 135 (779)
.++++|+|++|.+++. ++..+..+++|++|+|++|.+++.. + .+.++++|++|+|++|.+.+++ ..+.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence 5799999999998766 4555678899999999999997432 2 3577899999999999999876 568899
Q ss_pred CCccEEEcccCCCC--CCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCc-ccc-CC
Q 004020 136 TSLQTISLDYNSFD--SWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLS-FGK-SS 211 (779)
Q Consensus 136 ~~L~~L~Ls~N~l~--~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~-~~ 211 (779)
++|++|+++.+... ....+..+..+++|+.|.++++.. +.+|..+. .+++|++|+|++|.+++..... +.. .+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~--~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP--FAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG--GGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh--hcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 99999999854322 123456778888999999887533 35666664 6889999999999977544422 233 57
Q ss_pred cceeeccCCCCCCCCCCchhhhcCCCCccEEEee-----------cCcccCC-CCC-CCCCCCCcEEEccCCccccccCh
Q 004020 212 IQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLH-----------GNSFTGP-LPD-LSGLSSLQDFSVRDNQLTGIVPS 278 (779)
Q Consensus 212 L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~-----------~N~l~~~-~~~-~~~l~~L~~L~l~~N~l~~~~p~ 278 (779)
|+.|++.++ +.. .+.......+++|++|+|+ .|.+++. ++. ...+++|++|+++.|++++..+.
T Consensus 320 L~~L~L~~~-~~~--~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 320 LEVLETRNV-IGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp CCEEEEEGG-GHH--HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred CCEEeccCc-cCH--HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 888888733 211 1122334567889999999 3566542 222 34578899999988999887777
Q ss_pred hhhC-CCCCCEEEcc----CccccccCCC---------CCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCc
Q 004020 279 SLVN-LHSLAVVNLT----NNLFQGQTPK---------FNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYP 344 (779)
Q Consensus 279 ~l~~-l~~L~~L~Ls----~N~l~g~~p~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (779)
.+.. +++|+.|+|+ .|.+++.+.+ +.....+++....+. . ....+..
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~---------l--~~~~~~~-------- 457 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG---------L--TDLGLSY-------- 457 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG---------C--CHHHHHH--------
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC---------c--cHHHHHH--------
Confidence 7776 8899999996 6677653211 000000000000000 0 0000000
Q ss_pred hhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccc-cccccccccccCCeEeccCcccccc-CCccCCCCCCCCc
Q 004020 345 AVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSG-TISSNFSRLTSLRQLMLSGNELTGT-IPKELTTLPSLEM 422 (779)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~ 422 (779)
.....++|+.|+|++|++++ .++..+..+++|++|+|++|.|++. ++.....+++|++
T Consensus 458 --------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 458 --------------------IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp --------------------HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred --------------------HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 00113478999999999887 4566668889999999999998765 4444567889999
Q ss_pred eeccCCccccc
Q 004020 423 LDVSNNHLFGK 433 (779)
Q Consensus 423 L~Ls~N~l~g~ 433 (779)
|+|++|++++.
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 99999998765
No 355
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=178.62 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=133.2
Q ss_pred ccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC--CCCCCCCcEEE
Q 004020 189 LMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD--LSGLSSLQDFS 266 (779)
Q Consensus 189 L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~ 266 (779)
-+.+++++|.++ .+|..+. ..++.|+|++|+|++.++. |..+++|++|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~----------------------------~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 63 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP----------------------------QYTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC----------------------------TTCSEEECCSSCCCEECCCCCGGGCTTCCEEE
T ss_pred CCEeEeCCCCcc-cCccCCC----------------------------CCCCEEEcCCCcCCccCchhhhccCCCCCEEE
Confidence 358899999998 5776553 4568899999999987653 78899999999
Q ss_pred ccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchh
Q 004020 267 VRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAV 346 (779)
Q Consensus 267 l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (779)
|++|+|++..|..|..+++|++|+|++|++++.+|..+.
T Consensus 64 L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------------------------- 102 (220)
T 2v70_A 64 FSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK----------------------------------------- 102 (220)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT-----------------------------------------
T ss_pred CCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc-----------------------------------------
Confidence 999999988888999999999999999999876654221
Q ss_pred cccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceecc
Q 004020 347 LAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVS 426 (779)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 426 (779)
..++|++|+|++|++++..|..|..+++|++|+|++|+|++..|..+..+++|++|+|+
T Consensus 103 ---------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 103 ---------------------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp ---------------------TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred ---------------------CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 22378999999999999889999999999999999999998889999999999999999
Q ss_pred CCcccccCC
Q 004020 427 NNHLFGKVP 435 (779)
Q Consensus 427 ~N~l~g~iP 435 (779)
+|++++..+
T Consensus 162 ~N~l~c~c~ 170 (220)
T 2v70_A 162 ANPFNCNCY 170 (220)
T ss_dssp SCCEECSGG
T ss_pred CcCCcCCCc
Confidence 999998765
No 356
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.4e-19 Score=193.45 Aligned_cols=174 Identities=19% Similarity=0.259 Sum_probs=122.4
Q ss_pred EEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCC-CCCCccEEecCCCCCCCCCcccccCCCCccEEEcccC
Q 004020 69 RIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLS-GLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYN 146 (779)
Q Consensus 69 ~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 146 (779)
.+++++++++ .+|..+. ..+++|+|++|+|++.++ .|. ++++|++|+|++|+|+.+++..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5777888888 5777665 368999999999998887 566 8999999999999999998888888888888888888
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCC
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKL 226 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~ 226 (779)
+|.. ..+..|..+++|+.|+|++|+|++..|..|. .
T Consensus 99 ~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~----------------------------------------- 134 (361)
T 2xot_A 99 HLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFE--D----------------------------------------- 134 (361)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTT--T-----------------------------------------
T ss_pred cCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhC--C-----------------------------------------
Confidence 8864 3334455555555555555555544444443 3
Q ss_pred CCchhhhcCCCCccEEEeecCcccCCCCC-C---CCCCCCcEEEccCCccccccChhhhCCCC--CCEEEccCccccc
Q 004020 227 NGSVAVIQNMTSLTQLWLHGNSFTGPLPD-L---SGLSSLQDFSVRDNQLTGIVPSSLVNLHS--LAVVNLTNNLFQG 298 (779)
Q Consensus 227 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~---~~l~~L~~L~l~~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~g 298 (779)
+++|+.|+|++|+|++.++. + ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|++..
T Consensus 135 ---------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 135 ---------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ---------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ---------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 45555555555555544433 2 45677777778788877655577777776 4889999998875
No 357
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=175.48 Aligned_cols=155 Identities=25% Similarity=0.316 Sum_probs=104.3
Q ss_pred EEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEcc
Q 004020 116 EVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLA 195 (779)
Q Consensus 116 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~ 195 (779)
.+++++|.++.+|... ...+++|+|++|+|.+...+..|..+++|+.|+|++|.|++..+..|. .+++|++|+|+
T Consensus 15 ~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE--GASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECC
T ss_pred EeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC--CCCCCCEEECC
Confidence 4444444444444322 123345555555554311223455555555555555555656666665 67788888888
Q ss_pred CCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEccCCcccc
Q 004020 196 FNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVRDNQLTG 274 (779)
Q Consensus 196 ~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~ 274 (779)
+|+|++..|..+. .+++|++|+|++|+|++.+|. +..+++|++|+|++|+|++
T Consensus 90 ~N~l~~~~~~~~~--------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 90 SNRLENVQHKMFK--------------------------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp SSCCCCCCGGGGT--------------------------TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred CCccCccCHhHhc--------------------------CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE
Confidence 8888765554443 578888888888888887764 8888889999999999988
Q ss_pred ccChhhhCCCCCCEEEccCccccccCC
Q 004020 275 IVPSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 275 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
..|..|..+++|+.|+|++|++++..+
T Consensus 144 ~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 144 VAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp BCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 888888889999999999998886544
No 358
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=9e-19 Score=174.70 Aligned_cols=151 Identities=21% Similarity=0.293 Sum_probs=128.4
Q ss_pred EEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCC
Q 004020 69 RIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNS 147 (779)
Q Consensus 69 ~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 147 (779)
.+++++++++ .+|..+. ++|++|+|++|+|++.++ .|.++++|++|+|++|+++.++++.|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3555566777 6677665 689999999999998887 79999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCC
Q 004020 148 FDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLN 227 (779)
Q Consensus 148 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~ 227 (779)
|.. ..+..|..+++|+.|+|++|.|++..|..|. .+++|++|+|++|+|++..+..+.
T Consensus 92 l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~------------------- 149 (220)
T 2v9t_B 92 ITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQ--DLHNLNLLSLYDNKLQTIAKGTFS------------------- 149 (220)
T ss_dssp CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTT-------------------
T ss_pred CCc-cCHhHccCCCCCCEEECCCCCCCEeCHHHcC--CCCCCCEEECCCCcCCEECHHHHh-------------------
Confidence 986 5556788999999999999999988888886 789999999999999976665554
Q ss_pred CchhhhcCCCCccEEEeecCcccC
Q 004020 228 GSVAVIQNMTSLTQLWLHGNSFTG 251 (779)
Q Consensus 228 ~~~~~~~~l~~L~~L~L~~N~l~~ 251 (779)
.+++|+.|+|++|.+..
T Consensus 150 -------~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 150 -------PLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp -------TCTTCCEEECCSSCEEC
T ss_pred -------CCCCCCEEEeCCCCcCC
Confidence 57788888888887763
No 359
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=5.7e-19 Score=176.17 Aligned_cols=145 Identities=21% Similarity=0.402 Sum_probs=134.1
Q ss_pred CcceeeEeCCC----------CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCC
Q 004020 54 CKWKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDN 122 (779)
Q Consensus 54 C~w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N 122 (779)
|.|..|.|+.. ..++.|+|++|+|++..+..|..+++|++|+|++|+|++..| .|.++++|++|+|++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 68999999752 369999999999998888899999999999999999999877 8999999999999999
Q ss_pred CCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCC
Q 004020 123 NFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQG 201 (779)
Q Consensus 123 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~ 201 (779)
+|+.+++..|.++++|++|+|++|+|.+ ..|..|..+++|+.|+|++|+|++..++.+. .+++|++|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHh--CCCCCCEEEeCCCCcCC
Confidence 9999999999999999999999999987 6788999999999999999999988777786 79999999999999873
No 360
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3.5e-19 Score=185.91 Aligned_cols=170 Identities=25% Similarity=0.377 Sum_probs=149.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
.+++.|++++|++... + .+..+++|++|+|++|++++.++ +.++++|++|+|++|+++.++. +..+++|++|+|+
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECC
Confidence 4799999999999854 4 58999999999999999998777 9999999999999999999764 8999999999999
Q ss_pred cCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCC
Q 004020 145 YNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDS 224 (779)
Q Consensus 145 ~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~ 224 (779)
+|++.+ + ..+..+++|+.|++++|++++. ..+. .+++|++|+|++|++++..| +.
T Consensus 121 ~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~L~~N~l~~~~~--l~---------------- 175 (291)
T 1h6t_A 121 HNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISDIVP--LA---------------- 175 (291)
T ss_dssp TSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCCCGG--GT----------------
T ss_pred CCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhc--cCCCCCEEEccCCccccchh--hc----------------
Confidence 999976 3 5789999999999999999965 4554 79999999999999996544 33
Q ss_pred CCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccc
Q 004020 225 KLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGI 275 (779)
Q Consensus 225 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 275 (779)
.+++|+.|+|++|.+++. +.+..+++|+.|++++|++...
T Consensus 176 ----------~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 176 ----------GLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ----------TCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECC
T ss_pred ----------CCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCC
Confidence 689999999999999875 5688899999999999999853
No 361
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1e-21 Score=227.10 Aligned_cols=344 Identities=12% Similarity=0.062 Sum_probs=235.1
Q ss_pred cEEEEEecCCC-ccc-cCCccccCCCCCcEEEcccCccccCC----C-CCCCCCCccEEecCCCCCCCCCcc----cccC
Q 004020 66 RVTRIQIGGQN-IEG-TLPKELNSLSSLTVLEVMKNKLTGQI----P-SLSGLSSLQEVLFDDNNFTSVPSD----FFKG 134 (779)
Q Consensus 66 ~v~~l~l~~~~-l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~----~-~~~~l~~L~~L~l~~N~l~~~~~~----~~~~ 134 (779)
++++|+|+++. ++. .++..+..+++|++|+|++|.+++.. + .+.++++|++|+|++|.++++... .+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 49999999887 221 22333458899999999999987653 2 346789999999999999865543 4568
Q ss_pred CCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeE---eecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-C
Q 004020 135 LTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANIT---GTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-S 210 (779)
Q Consensus 135 l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~---~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~ 210 (779)
+++|++|+|++|.+.+ +|..+..+++|+.|+++.+... +..+..+. .+++|+.|+++++... .+|..+.. .
T Consensus 219 ~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~-~l~~~~~~~~ 293 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV--FPRKLCRLGLSYMGPN-EMPILFPFAA 293 (592)
T ss_dssp CTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC--CCTTCCEEEETTCCTT-TGGGGGGGGG
T ss_pred CCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhh--ccccccccCccccchh-HHHHHHhhcC
Confidence 8999999999999976 7899999999999999864432 22233443 6889999999986443 66766655 6
Q ss_pred CcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCC-CCCCCCCcEEEcc-----------CCccccc-cC
Q 004020 211 SIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPD-LSGLSSLQDFSVR-----------DNQLTGI-VP 277 (779)
Q Consensus 211 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~l~-----------~N~l~~~-~p 277 (779)
+|+.|++++|.+... .....+..+++|+.|+|+++...+.++. ...+++|++|+++ .|.+++. ++
T Consensus 294 ~L~~L~Ls~~~l~~~--~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 294 QIRKLDLLYALLETE--DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GCCEEEETTCCCCHH--HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCcEEecCCCcCCHH--HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 899999999874322 1224467899999999994433334444 3568899999999 4677654 33
Q ss_pred hhhhCCCCCCEEEccCccccccCCCCC-----CCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccC
Q 004020 278 SSLVNLHSLAVVNLTNNLFQGQTPKFN-----SPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWK 352 (779)
Q Consensus 278 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (779)
..+..+++|++|+++.|++++..+..+ ....+.+........+.+.. .+ ..+.
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p--~~---~~~~----------------- 429 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP--LD---NGVR----------------- 429 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC--CH---HHHH-----------------
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch--HH---HHHH-----------------
Confidence 445669999999999999987544211 11111111000000000000 00 0000
Q ss_pred CCCCCCCCCCccccCCCCCeEEEEccCc--cccccccccccc-cccCCeEeccCccccc-cCCccCCCCCCCCceeccCC
Q 004020 353 GNNPCNSDWKGVSCDAGGNITVVNLKNL--GLSGTISSNFSR-LTSLRQLMLSGNELTG-TIPKELTTLPSLEMLDVSNN 428 (779)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~g~~p~~~~~-l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N 428 (779)
......++|+.|+|+++ .+++..+..++. +++|++|+|++|++++ .++..+..+++|++|+|++|
T Consensus 430 -----------~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 430 -----------SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp -----------HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred -----------HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 00112358999999854 478777776654 8999999999999987 45666788999999999999
Q ss_pred ccccc-CCC----CCCcceeeeCCCC
Q 004020 429 HLFGK-VPN----FRQNVIVKTDGNP 449 (779)
Q Consensus 429 ~l~g~-iP~----~~~~~~~~~~~n~ 449 (779)
++++. ++. +.....+.+.+|.
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCc
Confidence 98764 222 3344456666665
No 362
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=4.2e-19 Score=203.06 Aligned_cols=176 Identities=24% Similarity=0.346 Sum_probs=152.8
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 64 SNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 64 ~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
-.+++.|++++|.+.. ++ .|..+++|++|+|++|+|++.++ +..+++|+.|+|++|+|+.++ .+..+++|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEe
Confidence 3578999999999984 44 69999999999999999998777 999999999999999999986 5899999999999
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCC
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGD 223 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~ 223 (779)
++|+|.+ + ..+..+++|+.|+|++|.+++. ..+. .+++|++|+|++|+|++..| +.
T Consensus 117 s~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~l~~~~~--l~--------------- 172 (605)
T 1m9s_A 117 EHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISDIVP--LA--------------- 172 (605)
T ss_dssp TTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGG--SCTTCSEEECCSSCCCCCGG--GT---------------
T ss_pred cCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhc--ccCCCCEEECcCCcCCCchh--hc---------------
Confidence 9999976 3 5699999999999999999965 4554 79999999999999997655 33
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhh
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSL 280 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l 280 (779)
.+++|+.|+|++|+|++. |.+..+++|+.|+|++|++.+.....+
T Consensus 173 -----------~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 173 -----------GLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp -----------TCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred -----------cCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCCccccc
Confidence 689999999999999975 678899999999999999986433333
No 363
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.6e-19 Score=191.96 Aligned_cols=146 Identities=19% Similarity=0.275 Sum_probs=122.9
Q ss_pred CcceeeEeCCC----------CcEEEEEecCCCccccCCcccc-CCCCCcEEEcccCccccCCC-CCCCCCCccEEecCC
Q 004020 54 CKWKHIQCSPS----------NRVTRIQIGGQNIEGTLPKELN-SLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDD 121 (779)
Q Consensus 54 C~w~gv~c~~~----------~~v~~l~l~~~~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~ 121 (779)
|.|..+.|+.. ..++.|+|++|+|++..+..+. .+++|++|+|++|+|++.++ .|.++++|++|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888999752 3588999999999988888787 99999999999999999887 799999999999999
Q ss_pred CCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccC-CCCCcccEEEccCCCCC
Q 004020 122 NNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGG-DTIPGLMHLHLAFNFLQ 200 (779)
Q Consensus 122 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~~l~~L~~L~L~~N~l~ 200 (779)
|+|+.+++..|.++++|++|+|++|+|.. ..|..|..+++|+.|+|++|+|++..+..+.+ ..+++|++|+|++|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99999999999999999999999999986 56889999999999999999998533333311 13566666666666666
No 364
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.78 E-value=3.2e-19 Score=182.58 Aligned_cols=141 Identities=23% Similarity=0.229 Sum_probs=107.9
Q ss_pred CCcccceecccccEEEEEEEE-cCCcE--EEEEEecccccC----------------------hhHHHHHHHHHHHHHcC
Q 004020 591 NFSEENVLGRGGFGTVYKGEL-HDGTK--IAVKRMESAVVS----------------------EKGFAEFKSEIAVLTKV 645 (779)
Q Consensus 591 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~----------------------~~~~~~~~~E~~~l~~l 645 (779)
-|++.+.||+|+||.||+|.. .+|+. ||||+++..... ......+.+|++++.++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999987 68889 999987543211 01123688999999999
Q ss_pred CCCcc--ceEeeEEEeCCeEEEEEEecCC-C----ChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCc
Q 004020 646 RHRHL--VGLLGYCLDGNERLLVYEYMPQ-G----TLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLH-GLAHQSF 717 (779)
Q Consensus 646 ~h~ni--v~~~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH-~~~~~~i 717 (779)
.|+++ +.++++ +..++||||+.+ | +|.+.... .++..+..++.|++.||.||| + .+|
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~--------~~~~~~~~i~~qi~~~l~~lH~~---~gi 192 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE--------LKELDVEGIFNDVVENVKRLYQE---AEL 192 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG--------GGGSCHHHHHHHHHHHHHHHHHT---SCE
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc--------cChHHHHHHHHHHHHHHHHHHHH---CCE
Confidence 88764 334432 356899999942 3 66655421 123456789999999999999 6 799
Q ss_pred EEcCCCCCCEEEcCCCcEEEEeeccceecCC
Q 004020 718 IHRDLKPSNILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 718 vHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
+||||||+|||+++ .++|+|||+|.....
T Consensus 193 vHrDlkp~NILl~~--~~~liDFG~a~~~~~ 221 (258)
T 1zth_A 193 VHADLSEYNIMYID--KVYFIDMGQAVTLRH 221 (258)
T ss_dssp ECSSCSTTSEEESS--SEEECCCTTCEETTS
T ss_pred EeCCCCHHHEEEcC--cEEEEECcccccCCC
Confidence 99999999999988 899999999987643
No 365
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=4e-21 Score=218.46 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=111.0
Q ss_pred cCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCC-------------CCCCCcccccCCCCccEEE-cccCCCCCC
Q 004020 86 NSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNN-------------FTSVPSDFFKGLTSLQTIS-LDYNSFDSW 151 (779)
Q Consensus 86 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~-------------l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~ 151 (779)
..+++|+.|+|++|+|+.+++.++++++|+.|++++|. +.+.++..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~- 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD- 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-
Confidence 67888999999999998666688899999999987775 5566667777888888887 66665421
Q ss_pred CCcc------cccC--CCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCC
Q 004020 152 VIPE------SLKD--ATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGD 223 (779)
Q Consensus 152 ~~p~------~~~~--l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~ 223 (779)
++. .+.. ...|+.|+|++|+|++ +|. ++ .+++|++|+|++|+|+ .+|..+
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~--~l~~L~~L~Ls~N~l~-~lp~~~---------------- 482 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LE--QLLLVTHLDLSHNRLR-ALPPAL---------------- 482 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GG--GGTTCCEEECCSSCCC-CCCGGG----------------
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-cc--ccccCcEeecCccccc-ccchhh----------------
Confidence 000 0000 0124444444444443 333 32 3444444444444444 334333
Q ss_pred CCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCcccccc-ChhhhCCCCCCEEEccCccccccCC
Q 004020 224 SKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIV-PSSLVNLHSLAVVNLTNNLFQGQTP 301 (779)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~~p 301 (779)
+.+++|+.|+|++|+|++ +|.+..+++|+.|+|++|+|++.+ |..++.+++|+.|+|++|+|++.+|
T Consensus 483 ----------~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 483 ----------AALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp ----------GGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ----------hcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 246666666666666665 336666666666666666666554 6666666666666666666665544
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=5.4e-18 Score=170.23 Aligned_cols=154 Identities=20% Similarity=0.282 Sum_probs=86.5
Q ss_pred cEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCc
Q 004020 92 TVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGA 171 (779)
Q Consensus 92 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n 171 (779)
+.++.++++++.++..+. ++|++|+|++|+++++++..|.++++|++|+|++|+|.. ..+..|..
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~------------ 86 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDS------------ 86 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT------------
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhccc------------
Confidence 456666666655444333 566666666666666666666666666666666666643 22233344
Q ss_pred eeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccC
Q 004020 172 NITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTG 251 (779)
Q Consensus 172 ~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 251 (779)
+++|++|+|++|+|++..+..+. .+++|+.|+|++|+|+.
T Consensus 87 --------------l~~L~~L~Ls~N~l~~l~~~~~~--------------------------~l~~L~~L~Ls~N~l~~ 126 (229)
T 3e6j_A 87 --------------LTQLTVLDLGTNQLTVLPSAVFD--------------------------RLVHLKELFMCCNKLTE 126 (229)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTT--------------------------TCTTCCEEECCSSCCCS
T ss_pred --------------CCCcCEEECCCCcCCccChhHhC--------------------------cchhhCeEeccCCcccc
Confidence 45555555555555533333222 35555566666666554
Q ss_pred CCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccC
Q 004020 252 PLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQT 300 (779)
Q Consensus 252 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 300 (779)
.+..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..
T Consensus 127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 4334555666666666666666554555666666666666666665543
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=7.5e-19 Score=180.38 Aligned_cols=173 Identities=24% Similarity=0.287 Sum_probs=118.8
Q ss_pred CCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEe
Q 004020 88 LSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFS 167 (779)
Q Consensus 88 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~ 167 (779)
+.+++.+++++|.++..+ .+..+++|++|++++|+++.++ .+..+++|++|+|++|++.+ ++. +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEE
Confidence 445555666666665443 5566666666666666666665 35666666677776666654 333 66666666666
Q ss_pred ccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecC
Q 004020 168 ANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGN 247 (779)
Q Consensus 168 l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N 247 (779)
+++|++++ +|... . ++|++|+|++|++++. + . +..+++|+.|+|++|
T Consensus 92 L~~N~l~~-l~~~~---~-~~L~~L~L~~N~l~~~-~-~--------------------------l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP---S-ACLSRLFLDNNELRDT-D-S--------------------------LIHLKNLEILSIRNN 138 (263)
T ss_dssp CCSSCCSC-CTTCC---C-SSCCEEECCSSCCSBS-G-G--------------------------GTTCTTCCEEECTTS
T ss_pred CCCCccCC-cCccc---c-CcccEEEccCCccCCC-h-h--------------------------hcCcccccEEECCCC
Confidence 66666664 33322 2 6778888888887742 2 1 336788888888888
Q ss_pred cccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCC
Q 004020 248 SFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPK 302 (779)
Q Consensus 248 ~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 302 (779)
++++. +.+..+++|++|++++|++++. ..+..+++|+.|+|++|++++....
T Consensus 139 ~i~~~-~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 139 KLKSI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp CCCBC-GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred cCCCC-hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence 88875 4677888888888888888865 6788888899999999988876443
No 368
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=3.1e-18 Score=167.79 Aligned_cols=155 Identities=12% Similarity=0.181 Sum_probs=99.2
Q ss_pred CCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCc
Q 004020 109 SGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPG 188 (779)
Q Consensus 109 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~ 188 (779)
..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..|..+. .+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLS--GLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCT--TCTT
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhc--CCCC
Confidence 34455555555555555544 25555566666666665432 23555666666666666666655666665 5777
Q ss_pred ccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEcc
Q 004020 189 LMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVR 268 (779)
Q Consensus 189 L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~ 268 (779)
|++|+|++|++++..|..++ .+++|++|+|++|.+.+.+|.+..+++|++|+++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~--------------------------~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKIN--------------------------TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ 167 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHT--------------------------TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECT
T ss_pred CCEEEecCCccCcHhHHHHh--------------------------hCCCCCEEEccCCCCccccHhhcCCCCCCEEECC
Confidence 88888888877765554433 5777888888888733344567778888888888
Q ss_pred CCccccccChhhhCCCCCCEEEccCccccc
Q 004020 269 DNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 269 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
+|++++ ++ .+..+++|+.|++++|++.+
T Consensus 168 ~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 168 FDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 888875 44 67888888888888888754
No 369
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=1.9e-20 Score=216.53 Aligned_cols=228 Identities=16% Similarity=0.186 Sum_probs=136.5
Q ss_pred CcEEEEEecCCCccccCCcccc-CCCCCcEEEcccC-ccccC-CC-CCCCCCCccEEecCCCCCCCCCccccc----CCC
Q 004020 65 NRVTRIQIGGQNIEGTLPKELN-SLSSLTVLEVMKN-KLTGQ-IP-SLSGLSSLQEVLFDDNNFTSVPSDFFK----GLT 136 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~-~l~~L~~L~Ls~N-~l~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~----~l~ 136 (779)
.++++|+|+++.+++..+..+. .+++|++|+|++| .++.. ++ .+.++++|++|+|++|.++......+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4789999999998887777775 6889999999998 55542 33 345789999999999998876554443 677
Q ss_pred CccEEEcccCC--CCCCCCcccccCCCCCceEeccCc-eeEeecCCCccCCCCCcccEEEccCCC---------------
Q 004020 137 SLQTISLDYNS--FDSWVIPESLKDATGLQRFSANGA-NITGTIPDFLGGDTIPGLMHLHLAFNF--------------- 198 (779)
Q Consensus 137 ~L~~L~Ls~N~--l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~l~~L~~L~L~~N~--------------- 198 (779)
+|++|+|++|. +....++..+.++++|+.|++++| .+++ +|..+. .+++|++|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQ--RAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHH--HCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHh--cCCcceEcccccccCccchhhHHHHHHHH
Confidence 99999999887 211112233455789999999988 3333 555554 56777777755442
Q ss_pred -----------CCCcCCCccc----c-CCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccC-CCCCC-CCCC
Q 004020 199 -----------LQGPIPLSFG----K-SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTG-PLPDL-SGLS 260 (779)
Q Consensus 199 -----------l~~~~p~~~~----~-~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~~l~ 260 (779)
+....+..+. . .+|+.|++++|.+... +....+..+++|+.|+|++| ++. .++.+ ..++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY--DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH--HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH--HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 1111111111 1 4566666666653311 11222445666666666666 321 11221 2356
Q ss_pred CCcEEEc---------cCCccccccChhhh-CCCCCCEEEccCccccc
Q 004020 261 SLQDFSV---------RDNQLTGIVPSSLV-NLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 261 ~L~~L~l---------~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g 298 (779)
+|++|++ ..|.+++.....+. .+++|+.|+++.|.+++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 6666666 23344433233333 35666666666666554
No 370
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=2.3e-19 Score=210.46 Aligned_cols=228 Identities=18% Similarity=0.124 Sum_probs=115.9
Q ss_pred CCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEec
Q 004020 89 SSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSA 168 (779)
Q Consensus 89 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l 168 (779)
+.++.|+|++|.+...+. ..|+.++|++|.|. .++++.|++. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~-----~~l~~l~Ls~~~i~--------------~~~~~~n~~~--~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-----ALLQHKKLSQYSID--------------EDDDIENRMV--MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcchh-----hHhhcCccCccccc--------------Ccccccccee--cChhhhccCCCCcEEEC
Confidence 457777887777766433 23455666666543 3455666664 46788889999999999
Q ss_pred cCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCc
Q 004020 169 NGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNS 248 (779)
Q Consensus 169 ~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 248 (779)
++|.++ .+|..++ .+++|++|+|++|+|+ .+|..++ .+++|++|+|++|.
T Consensus 232 s~n~l~-~l~~~~~--~l~~L~~L~Ls~N~l~-~lp~~~~--------------------------~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 232 SNLQIF-NISANIF--KYDFLTRLYLNGNSLT-ELPAEIK--------------------------NLSNLRVLDLSHNR 281 (727)
T ss_dssp TTSCCS-CCCGGGG--GCCSCSCCBCTTSCCS-CCCGGGG--------------------------GGTTCCEEECTTSC
T ss_pred CCCCCC-CCChhhc--CCCCCCEEEeeCCcCc-ccChhhh--------------------------CCCCCCEEeCcCCc
Confidence 999988 6777665 6889999999999998 7777665 68999999999999
Q ss_pred ccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccC
Q 004020 249 FTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACD 328 (779)
Q Consensus 249 l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (779)
|+..+..+..+++|++|+|++|.|+ .+|..|+.+++|++|+|++|+|++.+|..+.....
T Consensus 282 l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~------------------- 341 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV------------------- 341 (727)
T ss_dssp CSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-------------------
T ss_pred CCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-------------------
Confidence 9955446899999999999999997 78888999999999999999999887753211100
Q ss_pred ccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCeEeccCc----
Q 004020 329 GRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGN---- 404 (779)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N---- 404 (779)
....++|++|.++|.+|.. |+.|+|++|
T Consensus 342 ------------------------------------------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~ 373 (727)
T 4b8c_D 342 ------------------------------------------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQ 373 (727)
T ss_dssp ------------------------------------------HHHHHHHHHCCCCCCCCCC-------------------
T ss_pred ------------------------------------------hhhHHhhccCcccCcCccc------cceeEeecccccc
Confidence 1123567888888888853 556667766
Q ss_pred ----cccccCCccCCCCCCCCceeccCCcccccCC
Q 004020 405 ----ELTGTIPKELTTLPSLEMLDVSNNHLFGKVP 435 (779)
Q Consensus 405 ----~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 435 (779)
.|.+.++..+..+..+....+++|-+.+...
T Consensus 374 ~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 374 REYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ----------------------------CCCGGGC
T ss_pred cccCCccccccchhhcccccceeeeeccccccccC
Confidence 4555555556677777778888887765443
No 371
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.2e-20 Score=214.52 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=82.4
Q ss_pred CccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCC
Q 004020 238 SLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNS 317 (779)
Q Consensus 238 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~ 317 (779)
.|+.|+|++|+|++. |.+..+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +|.+
T Consensus 442 ~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l-------------- 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGV-------------- 504 (567)
T ss_dssp TCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGG--------------
T ss_pred CceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cccc--------------
Confidence 477888888888874 45778888888888888887 678888888888888888888775 2310
Q ss_pred cccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccc-cccccccccC
Q 004020 318 FCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTI-SSNFSRLTSL 396 (779)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~-p~~~~~l~~L 396 (779)
...++|+.|+|++|+|++.+ |..|+.+++|
T Consensus 505 -------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 505 -------------------------------------------------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp -------------------------------------------------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred -------------------------------------------------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 11225666777777776665 6667777777
Q ss_pred CeEeccCccccccCCcc---CCCCCCCCceec
Q 004020 397 RQLMLSGNELTGTIPKE---LTTLPSLEMLDV 425 (779)
Q Consensus 397 ~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~L 425 (779)
+.|+|++|+|++.+|.. +..+++|+.||+
T Consensus 536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777777777544321 122566666653
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=5e-18 Score=166.33 Aligned_cols=103 Identities=19% Similarity=0.254 Sum_probs=50.9
Q ss_pred cEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
+++.|++++|+++ .+| .+..+++|++|++++|.++. ++.+..+++|++|++++|+++...+..|..+++|++|+|++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 4555555555555 344 45555555555555554432 22455555555555555555544334455555555555555
Q ss_pred CCCCCCCCcccccCCCCCceEeccCce
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGAN 172 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~ 172 (779)
|++.+ ..|..+..+++|+.|++++|.
T Consensus 122 n~i~~-~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 122 SAHDD-SILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp SBCBG-GGHHHHTTCSSCCEEECCSCT
T ss_pred CccCc-HhHHHHhhCCCCCEEEccCCC
Confidence 55533 233344444444444444443
No 373
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=6.1e-18 Score=173.58 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=137.8
Q ss_pred cEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
+++.++++++.+++.. .+..+++|++|++++|+++.. +.+..+++|++|+|++|+++++++ +..+++|++|+|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 3556677788887443 578889999999999999854 478889999999999999999887 88999999999999
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCC
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSK 225 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~ 225 (779)
|++.+ +|.... ++|+.|++++|++++ ++ .+. .+++|++|+|++|++++. + .
T Consensus 95 N~l~~--l~~~~~--~~L~~L~L~~N~l~~-~~-~l~--~l~~L~~L~Ls~N~i~~~-~-~------------------- 145 (263)
T 1xeu_A 95 NRLKN--LNGIPS--ACLSRLFLDNNELRD-TD-SLI--HLKNLEILSIRNNKLKSI-V-M------------------- 145 (263)
T ss_dssp SCCSC--CTTCCC--SSCCEEECCSSCCSB-SG-GGT--TCTTCCEEECTTSCCCBC-G-G-------------------
T ss_pred CccCC--cCcccc--CcccEEEccCCccCC-Ch-hhc--CcccccEEECCCCcCCCC-h-H-------------------
Confidence 99976 444333 899999999999986 34 354 789999999999999853 2 2
Q ss_pred CCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccc
Q 004020 226 LNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGI 275 (779)
Q Consensus 226 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 275 (779)
+..+++|+.|+|++|++++. +.+..+++|+.|++++|++.+.
T Consensus 146 -------l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 -------LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -------GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred -------HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 33688999999999999987 6788899999999999999865
No 374
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=1.6e-19 Score=208.79 Aligned_cols=328 Identities=13% Similarity=0.105 Sum_probs=206.6
Q ss_pred CcEEEEEecCC-Ccccc-CCccccCCCCCcEEEcccCccccCCC-----CCCCCCCccEEecCCCCCCCCCcccc----c
Q 004020 65 NRVTRIQIGGQ-NIEGT-LPKELNSLSSLTVLEVMKNKLTGQIP-----SLSGLSSLQEVLFDDNNFTSVPSDFF----K 133 (779)
Q Consensus 65 ~~v~~l~l~~~-~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~l~~N~l~~~~~~~~----~ 133 (779)
.++++|+|++| .++.. ++..+..+++|++|+|++|.+++..+ ....+++|++|++++|. ..+....+ .
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVT 208 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHH
Confidence 47999999999 55543 44445589999999999999876443 23478899999999998 44444333 4
Q ss_pred CCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCce--------------------------eE----eecCCCccC
Q 004020 134 GLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGAN--------------------------IT----GTIPDFLGG 183 (779)
Q Consensus 134 ~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~--------------------------l~----~~~p~~~~~ 183 (779)
++++|++|+|++|.... .++..+..+++|+.|++..+. +. +.++..+.
T Consensus 209 ~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~- 286 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS- 286 (594)
T ss_dssp HCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH-
T ss_pred hCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH-
Confidence 56999999999983222 266777778888888765442 11 11222221
Q ss_pred CCCCcccEEEccCCCCCCcCCCcc-cc-CCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeec---------CcccCC
Q 004020 184 DTIPGLMHLHLAFNFLQGPIPLSF-GK-SSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHG---------NSFTGP 252 (779)
Q Consensus 184 ~~l~~L~~L~L~~N~l~~~~p~~~-~~-~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~---------N~l~~~ 252 (779)
.+++|++|+|++|.+++.....+ .. .+|+.|++.+| +. ..+.......+++|+.|+|++ |.+++.
T Consensus 287 -~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~--~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 287 -VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE--DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp -HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH--HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred -hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC--HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 46899999999999875433332 22 67999999987 21 111222333589999999954 444432
Q ss_pred C-CCC-CCCCCCcEEEccCCccccccChhhh-CCCCCCEEEcc--C----ccccccCCCCCCCcccccccCCCCcccCCC
Q 004020 253 L-PDL-SGLSSLQDFSVRDNQLTGIVPSSLV-NLHSLAVVNLT--N----NLFQGQTPKFNSPVRFDMAKGSNSFCLDDA 323 (779)
Q Consensus 253 ~-~~~-~~l~~L~~L~l~~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 323 (779)
. ..+ ..+++|+.|.++.|.+++..+..+. .+++|+.|+|+ + |.+++...+.. ...-.....++..+...
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG--FGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH--HHHHHHHCTTCCEEECC
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH--HHHHHhhCCCccEEeec
Confidence 1 122 2478999999999999877777776 58999999999 4 55553211000 00000000000000000
Q ss_pred CcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccc-cccccCCeEecc
Q 004020 324 GVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNF-SRLTSLRQLMLS 402 (779)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~-~~l~~L~~L~Ls 402 (779)
. .... ..+.. .....++|+.|+|++|.+++..+..+ ..+++|+.|+|+
T Consensus 441 ~-~l~~--~~~~~----------------------------l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 441 G-LLTD--KVFEY----------------------------IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp S-SCCH--HHHHH----------------------------HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred C-cccH--HHHHH----------------------------HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 0 0000 00000 00013478899999998877666555 678889999999
Q ss_pred CccccccCCcc-CCCCCCCCceeccCCcccc
Q 004020 403 GNELTGTIPKE-LTTLPSLEMLDVSNNHLFG 432 (779)
Q Consensus 403 ~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l~g 432 (779)
+|.+++..+.. ...+++|++|+|++|+++.
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 99987655543 3457889999999998853
No 375
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.1e-16 Score=155.78 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=113.1
Q ss_pred cEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccCh-hhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCc
Q 004020 240 TQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPS-SLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSF 318 (779)
Q Consensus 240 ~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 318 (779)
+.+++++|+++..+..+. .+|++|++++|+|++..+. .|..+++|++|+|++|+|++.+|..+..
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG------------ 76 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT------------
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC------------
Confidence 688999999976555554 3899999999999876664 4889999999999999999877764332
Q ss_pred ccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCe
Q 004020 319 CLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQ 398 (779)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~ 398 (779)
.++|++|+|++|+|++..|..|..+++|++
T Consensus 77 --------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 77 --------------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp --------------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred --------------------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 237899999999999988888999999999
Q ss_pred EeccCccccccCCccCCCCCCCCceeccCCcccccCCC
Q 004020 399 LMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN 436 (779)
Q Consensus 399 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~ 436 (779)
|+|++|+|++.+|..+..+++|++|+|++|++++..|.
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999999999999999999999999988763
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=8e-17 Score=156.90 Aligned_cols=131 Identities=18% Similarity=0.300 Sum_probs=117.8
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCCC--CCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPS--LSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
+.|++++++++ .+|..+.. +|++|+|++|+|++.++. |.++++|++|+|++|+|+++++..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46777788886 78877755 999999999999988873 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCC
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIP 204 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p 204 (779)
|+|.+ ..+..|.++++|+.|+|++|+|++..|..+. .+++|++|+|++|.+++..+
T Consensus 88 N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECTTCCBCCSGG
T ss_pred CcCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhh--cCCCCCEEEeCCCCccCcCc
Confidence 99987 6677899999999999999999999999986 79999999999999997554
No 377
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.67 E-value=1.6e-16 Score=168.46 Aligned_cols=148 Identities=12% Similarity=0.096 Sum_probs=105.6
Q ss_pred HHHHhhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccC------------hhH--------HHHHHHHHHHHH
Q 004020 584 VLRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVS------------EKG--------FAEFKSEIAVLT 643 (779)
Q Consensus 584 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~------------~~~--------~~~~~~E~~~l~ 643 (779)
.+..-..-|.+.+.||+|+||.||+|...+|+.||||+++....+ ... .....+|...+.
T Consensus 89 ~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~ 168 (397)
T 4gyi_A 89 THAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMK 168 (397)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 333333449999999999999999999989999999987532110 000 112346777777
Q ss_pred cCCCCccceEeeEEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCC
Q 004020 644 KVRHRHLVGLLGYCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLK 723 (779)
Q Consensus 644 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlk 723 (779)
++.+.++....-+... ..++||||++|+.+.++.. . .....++.|++.+|.|||. .||||||||
T Consensus 169 rL~~~gv~vp~p~~~~--~~~LVME~i~G~~L~~l~~---------~--~~~~~l~~qll~~l~~lH~---~gIVHrDLK 232 (397)
T 4gyi_A 169 ALYEEGFPVPEPIAQS--RHTIVMSLVDALPMRQVSS---------V--PDPASLYADLIALILRLAK---HGLIHGDFN 232 (397)
T ss_dssp HHHHTTCSCCCEEEEE--TTEEEEECCSCEEGGGCCC---------C--SCHHHHHHHHHHHHHHHHH---TTEECSCCS
T ss_pred HHHhcCCCCCeeeecc--CceEEEEecCCccHhhhcc---------c--HHHHHHHHHHHHHHHHHHH---CCCcCCCCC
Confidence 7765544322222222 2379999999988865431 1 1235688999999999996 899999999
Q ss_pred CCCEEEcCCC----------cEEEEeeccceecC
Q 004020 724 PSNILLGDDM----------RAKVADFGLVRLAP 747 (779)
Q Consensus 724 p~NIll~~~~----------~~kl~DFG~a~~~~ 747 (779)
|.|||+++++ .+.|+||+-+....
T Consensus 233 p~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~ 266 (397)
T 4gyi_A 233 EFNILIREEKDAEDPSSITLTPIIIXFPQMVSMD 266 (397)
T ss_dssp TTSEEEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred HHHEEEeCCCCcccccccccceEEEEeCCcccCC
Confidence 9999998776 38999999876543
No 378
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=4.5e-16 Score=149.52 Aligned_cols=134 Identities=22% Similarity=0.369 Sum_probs=112.1
Q ss_pred CcceeeEeCCCCcEEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccc
Q 004020 54 CKWKHIQCSPSNRVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFF 132 (779)
Q Consensus 54 C~w~gv~c~~~~~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 132 (779)
|.|.+|.|+ +++++ .+|..+. ++|++|+|++|++++.++ .|.++++|++|+|++|+++.+++..|
T Consensus 7 C~~~~l~~~-----------~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (177)
T 2o6r_A 7 CSGTEIRCN-----------SKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72 (177)
T ss_dssp EETTEEECC-----------SSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred eCCCEEEec-----------CCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc
Confidence 567776665 44555 4565443 689999999999998877 68999999999999999999999999
Q ss_pred cCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCC
Q 004020 133 KGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIP 204 (779)
Q Consensus 133 ~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p 204 (779)
..+++|++|+|++|+|++ ..+..|..+++|+.|++++|++++..+..+. .+++|++|+|++|.+++..|
T Consensus 73 ~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSCBCCCHH
T ss_pred cCCCccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhc--CCcccCEEEecCCCeeccCc
Confidence 999999999999999986 5666789999999999999999966555554 68999999999999987554
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.2e-16 Score=152.08 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=119.8
Q ss_pred CcEEEEEecCCCcc-ccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIE-GTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
.++++|++++|+++ +.+|..+..+++|++|+|++|.|++. +.+..+++|++|+|++|+++..++..+..+++|++|+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 57999999999998 88898899999999999999999887 88999999999999999999977777888999999999
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEeecC---CCccCCCCCcccEEEccCCCCCCcCCCc
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITGTIP---DFLGGDTIPGLMHLHLAFNFLQGPIPLS 206 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 206 (779)
++|++.+...+..+..+++|+.|++++|.+++..+ ..+. .+++|++|++++|.+. .+|..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK--LLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT--TCSSCCEETTEETTSC-BCCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH--hCccCcEecCCCCChh-hcccc
Confidence 99999863233789999999999999999986544 3554 7899999999999988 55543
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=148.64 Aligned_cols=127 Identities=22% Similarity=0.338 Sum_probs=110.8
Q ss_pred EEEecCCCccccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCC
Q 004020 69 RIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSF 148 (779)
Q Consensus 69 ~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 148 (779)
.+++++++++ .+|..+. ++|++|+|++|+|+.++..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 5777788888 6777664 589999999999986666899999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCC
Q 004020 149 DSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQG 201 (779)
Q Consensus 149 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~ 201 (779)
.+ ..|..|..+++|+.|+|++|+|+...+..|. .+++|++|+|++|.+..
T Consensus 91 ~~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGANPLYC 140 (193)
T ss_dssp CB-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSSCEEC
T ss_pred CE-eCHHHhCCCCCCCEEECCCCCCCeeChhhhh--cCccccEEEeCCCCeec
Confidence 87 6677899999999999999999966666675 68999999999999873
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.3e-15 Score=144.90 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=67.5
Q ss_pred CCcccEEEccCCCCC-CcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcE
Q 004020 186 IPGLMHLHLAFNFLQ-GPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQD 264 (779)
Q Consensus 186 l~~L~~L~L~~N~l~-~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 264 (779)
.++|++|+|++|.++ +.+|..+. .+++|+.|+|++|.+++. +.+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~--------------------------~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~ 75 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA--------------------------EFVNLEFLSLINVGLISV-SNLPKLPKLKK 75 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG--------------------------GGGGCCEEEEESSCCCCC-SSCCCCSSCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHH--------------------------hCCCCCEEeCcCCCCCCh-hhhccCCCCCE
Confidence 467888888888887 66666544 477888888888888876 66788888888
Q ss_pred EEccCCccccccChhhhCCCCCCEEEccCccccc
Q 004020 265 FSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 265 L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
|++++|++++.+|..+..+++|++|+|++|++++
T Consensus 76 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp EEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred EECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence 8888888887778877778888888888887764
No 382
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.6e-16 Score=146.50 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=101.4
Q ss_pred CcEEEEEecCCCcc-ccCCccccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIE-GTLPKELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
.+++.|++++|+++ +.+|..+..+++|++|+|++|++++. +.+.++++|++|+|++|++++..+..+..+++|++|+|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 46888888888888 78888888888888888888888877 77888888888888888888866667777888888888
Q ss_pred ccCCCCCCCCcccccCCCCCceEeccCceeEeecC---CCccCCCCCcccEEEccC
Q 004020 144 DYNSFDSWVIPESLKDATGLQRFSANGANITGTIP---DFLGGDTIPGLMHLHLAF 196 (779)
Q Consensus 144 s~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~~~l~~L~~L~L~~ 196 (779)
++|++.+...+..+..+++|+.|++++|.+++..+ ..+. .+++|++|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK--LLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHH--HCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHH--HCCCcccccCCC
Confidence 88888652233778888888888888888875544 3454 577888887753
No 383
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=3.6e-15 Score=143.11 Aligned_cols=135 Identities=21% Similarity=0.241 Sum_probs=110.0
Q ss_pred CccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCC
Q 004020 238 SLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNS 317 (779)
Q Consensus 238 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~ 317 (779)
..+.+++++|+++..+..+. ++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+.
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------ 73 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD------------ 73 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT------------
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc------------
Confidence 35678888888887655443 6889999999999877777788899999999999988866554222
Q ss_pred cccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCC
Q 004020 318 FCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLR 397 (779)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~ 397 (779)
..++|+.|+|++|++++..+..|..+++|+
T Consensus 74 --------------------------------------------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 74 --------------------------------------------------KLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp --------------------------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred --------------------------------------------------CCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 123788999999999987777889999999
Q ss_pred eEeccCccccccCCccCCCCCCCCceeccCCcccccCCC
Q 004020 398 QLMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGKVPN 436 (779)
Q Consensus 398 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~ 436 (779)
+|+|++|+|++..+..+..+++|++|+|++|++++..|.
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 999999999966566678899999999999999998874
No 384
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.8e-16 Score=168.55 Aligned_cols=283 Identities=13% Similarity=0.177 Sum_probs=146.2
Q ss_pred cEEEEEecCCCccccCCccccC-CCCCcEEEcccCccc--cCCCCCCCCCCccEEecCCCCCCCCCcccccC--------
Q 004020 66 RVTRIQIGGQNIEGTLPKELNS-LSSLTVLEVMKNKLT--GQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKG-------- 134 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~-l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-------- 134 (779)
++++|+++++ +...--..+.. +++|++|||++|++. ...+ +.++.++.+.+..| .|+..+|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTT---EECTTTTEEEETTEEEE
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc--cccccccccccccc---ccCHHHhcccccccccc
Confidence 4666666643 11111112323 677888888887776 2221 11222444444444 456666666
Q ss_pred CCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCC----CCcCCCcccc-
Q 004020 135 LTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFL----QGPIPLSFGK- 209 (779)
Q Consensus 135 l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l----~~~~p~~~~~- 209 (779)
+++|++|+|+. .+.. +.+..|.++++|+.|++.+|.++...+..|. .+.++..+.+..+.. .......|..
T Consensus 100 ~~~L~~l~L~~-~i~~-I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~--~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKN-IEDAAFKGCDNLKICQIRKKTAPNLLPEALA--DSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCE-ECTTTTTTCTTCCEEEBCCSSCCEECTTSSC--TTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccc-hhHHHhhcCcccceEEcCCCCccccchhhhc--CCCceEEecCcchhhhhccccccccccccc
Confidence 77777777777 5654 3455677777777777777777655555554 355555555544221 1111111211
Q ss_pred CCcc-eeeccCCCCCCCCCC-chhhhcCCCCccEEEeecCcccCCCCCC-CCCCCCcEEEccCCccccccChhhhCCCCC
Q 004020 210 SSIQ-TLWLNGQKGDSKLNG-SVAVIQNMTSLTQLWLHGNSFTGPLPDL-SGLSSLQDFSVRDNQLTGIVPSSLVNLHSL 286 (779)
Q Consensus 210 ~~L~-~l~l~~n~~~~~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L 286 (779)
..|+ .+.+..... +.. .........++..+.+.++-.......+ ..+++|+.++|++|+++...+.+|.++++|
T Consensus 176 ~~L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 176 EPLETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCCEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccceeEEecCCCc---HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 1121 111111000 000 0000001334444444443211111111 125666666666666665555566666667
Q ss_pred CEEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCcccc
Q 004020 287 AVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSC 366 (779)
Q Consensus 287 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (779)
+.|+|.+| ++...+..|.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~------------------------------------------------------------- 270 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFS------------------------------------------------------------- 270 (329)
T ss_dssp CEEECCTT-CCEECTTTTT-------------------------------------------------------------
T ss_pred CEEECCcc-cceehHHHhh-------------------------------------------------------------
Confidence 76666665 4433222211
Q ss_pred CCCCCeE-EEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceec
Q 004020 367 DAGGNIT-VVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDV 425 (779)
Q Consensus 367 ~~~~~L~-~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 425 (779)
...+|+ .++|.+ +++..-+..|.++++|+.|+|++|+++..-+..|..+++|+.++.
T Consensus 271 -~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 -NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 112465 666666 555455667888888888888888888555668888888888763
No 385
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.6e-15 Score=143.74 Aligned_cols=130 Identities=22% Similarity=0.284 Sum_probs=111.2
Q ss_pred ccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCcccccccCCCCc
Q 004020 239 LTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPVRFDMAKGSNSF 318 (779)
Q Consensus 239 L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 318 (779)
-+.+++++|.++..+..+. ++|++|++++|+|+ .+|..|..+++|+.|+|++|+|++..+..+..
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 3679999999997665553 68999999999998 78899999999999999999999876653322
Q ss_pred ccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccCCe
Q 004020 319 CLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQ 398 (779)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~ 398 (779)
.++|+.|+|++|+|++..|..|..+++|++
T Consensus 77 --------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 77 --------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred --------------------------------------------------CCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 237999999999999988889999999999
Q ss_pred EeccCccccccCCccCCCCCCCCceeccCCccccc
Q 004020 399 LMLSGNELTGTIPKELTTLPSLEMLDVSNNHLFGK 433 (779)
Q Consensus 399 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ 433 (779)
|+|++|+|++..+..+..+++|+.|+|++|++...
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred EECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999999966666799999999999999998754
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.8e-15 Score=140.74 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCcccEEEccCCCCC-CcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCCCCCCCCCCcE
Q 004020 186 IPGLMHLHLAFNFLQ-GPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLPDLSGLSSLQD 264 (779)
Q Consensus 186 l~~L~~L~L~~N~l~-~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 264 (779)
.++|++|++++|.++ +.+|..+. .+++|+.|+|++|.+++. +.+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~--------------------------~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~ 68 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTD--------------------------EFEELEFLSTINVGLTSI-ANLPKLNKLKK 68 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCT--------------------------TCTTCCEEECTTSCCCCC-TTCCCCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHh--------------------------hcCCCcEEECcCCCCCCc-hhhhcCCCCCE
Confidence 456777777777776 56665443 466777777777777766 55677777777
Q ss_pred EEccCCccccccChhhhCCCCCCEEEccCcccc
Q 004020 265 FSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQ 297 (779)
Q Consensus 265 L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 297 (779)
|++++|++++.+|..+..+++|++|+|++|+++
T Consensus 69 L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp EECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred EECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence 777777777666776666777777777777665
No 387
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=9.3e-16 Score=163.06 Aligned_cols=257 Identities=14% Similarity=0.093 Sum_probs=175.7
Q ss_pred CCcEEEEEecCCCcc--ccCCccccCCCCCcEEEcccCccccCCC-CCCC--------CCCccEEecCCCCCCCCCcccc
Q 004020 64 SNRVTRIQIGGQNIE--GTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSG--------LSSLQEVLFDDNNFTSVPSDFF 132 (779)
Q Consensus 64 ~~~v~~l~l~~~~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~--------l~~L~~L~l~~N~l~~~~~~~~ 132 (779)
..+++.|||++|+|. ...+..+ +.+..+.+..|. +++ +|.+ +++|+.|+|.+ +++.|+..+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 357999999999998 3332222 235666666663 223 6777 99999999998 8999999999
Q ss_pred cCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCcee----EeecCCCccCCCCCccc-EEEccCCCCCCcCCCcc
Q 004020 133 KGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANI----TGTIPDFLGGDTIPGLM-HLHLAFNFLQGPIPLSF 207 (779)
Q Consensus 133 ~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l----~~~~p~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~ 207 (779)
.++++|++|+|++|.+.. ..+..|..+.++..+.+..+.. ...-...|. .+..|+ .+++.... .++..+
T Consensus 121 ~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~--~~~~L~~~i~~~~~~---~l~~~~ 194 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI--EGEPLETTIQVGAMG---KLEDEI 194 (329)
T ss_dssp TTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE--ESCCCEEEEEECTTC---CHHHHH
T ss_pred hcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccc--cccccceeEEecCCC---cHHHHH
Confidence 999999999999998865 5667888887777777665322 111112222 344444 34443221 122211
Q ss_pred c-----cCCcceeeccCCCCCCCCCCchhhh-cCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccChhh
Q 004020 208 G-----KSSIQTLWLNGQKGDSKLNGSVAVI-QNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVPSSL 280 (779)
Q Consensus 208 ~-----~~~L~~l~l~~n~~~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l 280 (779)
. ..++..+.+.++-.. .....+ ..+++|+.|+|++|+++...+ .|.++++|+.+++.+| +..+-+.+|
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~----~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDN----ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCH----HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred hhcccCccccceEEEeeeecH----HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 1 123444444433110 011111 237999999999999998776 4999999999999998 876777899
Q ss_pred hCCCCCC-EEEccCccccccCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCC
Q 004020 281 VNLHSLA-VVNLTNNLFQGQTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNS 359 (779)
Q Consensus 281 ~~l~~L~-~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (779)
.++++|+ .|+|.+ +++...+..|
T Consensus 270 ~~~~~L~~~l~l~~-~l~~I~~~aF------------------------------------------------------- 293 (329)
T 3sb4_A 270 SNCGRLAGTLELPA-SVTAIEFGAF------------------------------------------------------- 293 (329)
T ss_dssp TTCTTCCEEEEECT-TCCEECTTTT-------------------------------------------------------
T ss_pred hCChhccEEEEEcc-cceEEchhhh-------------------------------------------------------
Confidence 9999999 999988 6654443322
Q ss_pred CCCccccCCCCCeEEEEccCccccccccccccccccCCeEec
Q 004020 360 DWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSLRQLML 401 (779)
Q Consensus 360 ~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L 401 (779)
....+|+.++|+.|++...-+..|.++++|+.++.
T Consensus 294 -------~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 -------MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -------TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -------hCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 22348999999999999887889999999999874
No 388
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=6.2e-15 Score=141.33 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=108.5
Q ss_pred CcEEEEEecCCCccccCCccccCCC-CCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEc
Q 004020 65 NRVTRIQIGGQNIEGTLPKELNSLS-SLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISL 143 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 143 (779)
..+++|++++|+++. +|. +..+. +|++|+|++|+|++. +.|.++++|++|+|++|+|+.+++..|..+++|++|+|
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 478999999999984 454 55555 999999999999876 78999999999999999999998888899999999999
Q ss_pred ccCCCCCCCCcc--cccCCCCCceEeccCceeEeecCCC----ccCCCCCcccEEEccCCCCC
Q 004020 144 DYNSFDSWVIPE--SLKDATGLQRFSANGANITGTIPDF----LGGDTIPGLMHLHLAFNFLQ 200 (779)
Q Consensus 144 s~N~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~----~~~~~l~~L~~L~L~~N~l~ 200 (779)
++|+|.. +|. .+..+++|+.|++++|.++ .+|.. +. .+++|++|++++|.+.
T Consensus 96 ~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~--~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVE--LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIY--KVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCC--GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHH--HCTTCSEETTEECCHH
T ss_pred CCCcCCc--chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHH--HCCccceeCCCcCCHH
Confidence 9999965 565 7889999999999999997 55664 54 6889999999998875
No 389
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=3.6e-14 Score=135.02 Aligned_cols=104 Identities=22% Similarity=0.381 Sum_probs=86.1
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccC
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYN 146 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 146 (779)
++|++++|+++ .+|..+. ++|++|+|++|+|++.+| .|.++++|++|+|++|+|+.+++..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46788888888 5777664 789999999999999877 7899999999999999999999998999999999999999
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeEe
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANITG 175 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~ 175 (779)
+|.+ ..+..|..+++|+.|+|++|.++.
T Consensus 89 ~l~~-~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKS-IPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9976 444567777777777777776664
No 390
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=9.1e-13 Score=143.10 Aligned_cols=110 Identities=12% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceE
Q 004020 88 LSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRF 166 (779)
Q Consensus 88 l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L 166 (779)
+..++.+.+.++ ++.+.. +|.++ +|+.+.|.+| ++.|...+|.++ +|++++|.. .+.. ..+..|.++++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~-I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ-LKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE-ECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE-ehHHHhhCcccCCee
Confidence 356666666543 444444 56664 6777777655 777777777664 577777764 4433 344667777777777
Q ss_pred eccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcc
Q 004020 167 SANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSF 207 (779)
Q Consensus 167 ~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 207 (779)
++.+|+++......|. ..+|+.+.|..+ ++..-...|
T Consensus 186 ~l~~n~l~~I~~~aF~---~~~L~~l~lp~~-l~~I~~~aF 222 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV---YAGIEEVLLPVT-LKEIGSQAF 222 (401)
T ss_dssp ECTTSCCSEECTTTTT---TCCCSEEECCTT-CCEECTTTT
T ss_pred ecCCCcceEechhhEe---ecccCEEEeCCc-hheehhhHh
Confidence 7777777644444442 467777777633 553333333
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3.8e-14 Score=135.79 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=82.8
Q ss_pred CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCC
Q 004020 107 SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTI 186 (779)
Q Consensus 107 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l 186 (779)
.+.++++|++|++++|+++.++ ......++|++|+|++|+|. +. +.+. .+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~-------------------------~~--~~l~--~l 63 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIR-------------------------KL--DGFP--LL 63 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCC-------------------------EE--CCCC--CC
T ss_pred hcCCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCC-------------------------cc--cccc--cC
Confidence 4555666666666666666553 22222225666666665554 32 2333 46
Q ss_pred CcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC--CCCCCCCCcE
Q 004020 187 PGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP--DLSGLSSLQD 264 (779)
Q Consensus 187 ~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~ 264 (779)
++|++|+|++|+|++..|..+ ..+++|++|+|++|+++..++ .+..+++|+.
T Consensus 64 ~~L~~L~Ls~N~l~~~~~~~~--------------------------~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIGEGLD--------------------------QALPDLTELILTNNSLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp SSCCEEECCSSCCCEECSCHH--------------------------HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred CCCCEEECCCCcccccCcchh--------------------------hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCE
Confidence 667777777777663322221 246677777777777765444 4667778888
Q ss_pred EEccCCccccccChh----hhCCCCCCEEEccCcccc
Q 004020 265 FSVRDNQLTGIVPSS----LVNLHSLAVVNLTNNLFQ 297 (779)
Q Consensus 265 L~l~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~ 297 (779)
|++++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888887 45553 888888888888888765
No 392
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=1.4e-13 Score=131.46 Aligned_cols=103 Identities=20% Similarity=0.348 Sum_probs=85.6
Q ss_pred EEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccC
Q 004020 68 TRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYN 146 (779)
Q Consensus 68 ~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 146 (779)
+.+++++|+++ .+|..+. ++|++|+|++|+|++.+| .|.++++|++|+|++|+|+++++..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999996 7787775 799999999999999877 7899999999999999999999988899999999999999
Q ss_pred CCCCCCCcccccCCCCCceEeccCceeE
Q 004020 147 SFDSWVIPESLKDATGLQRFSANGANIT 174 (779)
Q Consensus 147 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 174 (779)
+|.+ ..+..|..+++|+.|+|++|.+.
T Consensus 92 ~l~~-l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKS-IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCC-CCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccce-eCHHHhccccCCCEEEeCCCCcc
Confidence 9975 33444666666666666666665
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=7.6e-16 Score=150.82 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=106.5
Q ss_pred ccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCc
Q 004020 85 LNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQ 164 (779)
Q Consensus 85 l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~ 164 (779)
+.....++.++++.|.+++..|.+ +.+|. .|..+++|++|+|++|++.+ +| .+..+++|+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l----------------~~l~~-~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~ 73 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPI----------------EKMDA-TLSTLKACKHLALSTNNIEK--IS-SLSGMENLR 73 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTC----------------CCCHH-HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCC
T ss_pred HHhcccccCcchheeEeccccCcH----------------hhhhH-HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCC
Confidence 444556666666666666654421 11221 45566666666666666654 44 666666666
Q ss_pred eEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhcCCCCccEEEe
Q 004020 165 RFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQNMTSLTQLWL 244 (779)
Q Consensus 165 ~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~L~~L~L 244 (779)
.|++++|.++ .+|..+. .+++|++|+|++|++++ +| . +..+++|+.|+|
T Consensus 74 ~L~l~~n~l~-~l~~~~~--~~~~L~~L~L~~N~l~~-l~-~--------------------------~~~l~~L~~L~l 122 (198)
T 1ds9_A 74 ILSLGRNLIK-KIENLDA--VADTLEELWISYNQIAS-LS-G--------------------------IEKLVNLRVLYM 122 (198)
T ss_dssp EEEEEEEEEC-SCSSHHH--HHHHCSEEEEEEEECCC-HH-H--------------------------HHHHHHSSEEEE
T ss_pred EEECCCCCcc-cccchhh--cCCcCCEEECcCCcCCc-CC-c--------------------------cccCCCCCEEEC
Confidence 6666666666 4565554 45778888888887774 22 2 335778888888
Q ss_pred ecCcccCCCC--CCCCCCCCcEEEccCCccccccCh----------hhhCCCCCCEEEccCccccc
Q 004020 245 HGNSFTGPLP--DLSGLSSLQDFSVRDNQLTGIVPS----------SLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 245 ~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~g 298 (779)
++|++++..+ .+..+++|++|++++|++.+.+|. .+..+++|+.|| +|.++.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8888886443 477888888888888888876665 388899999887 676653
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.6e-16 Score=155.68 Aligned_cols=134 Identities=21% Similarity=0.263 Sum_probs=113.3
Q ss_pred CcEEEEEecCCCccccCCc------cccCCCCCcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCc
Q 004020 65 NRVTRIQIGGQNIEGTLPK------ELNSLSSLTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSL 138 (779)
Q Consensus 65 ~~v~~l~l~~~~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 138 (779)
.+++.++++.+++.|.+|. .|..+++|++|+|++|++++. |.+.++++|++|++++|+++.+|. .+..+++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L 95 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN-LDAVADTL 95 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHC
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCcccccc-hhhcCCcC
Confidence 3566677777777777776 899999999999999999985 489999999999999999998875 56778999
Q ss_pred cEEEcccCCCCCCCCcccccCCCCCceEeccCceeEeecC-CCccCCCCCcccEEEccCCCCCCcCCC
Q 004020 139 QTISLDYNSFDSWVIPESLKDATGLQRFSANGANITGTIP-DFLGGDTIPGLMHLHLAFNFLQGPIPL 205 (779)
Q Consensus 139 ~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~l~~L~~L~L~~N~l~~~~p~ 205 (779)
++|+|++|++.+ +| .+..+++|+.|++++|++++..+ +.+. .+++|++|++++|.+++.+|.
T Consensus 96 ~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~--~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 96 EELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLA--ALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHT--TTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHh--cCCCCCEEEecCCcccccccc
Confidence 999999999976 55 68899999999999999985432 3554 689999999999999876664
No 395
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4.3e-13 Score=127.49 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=96.3
Q ss_pred CcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccC
Q 004020 91 LTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANG 170 (779)
Q Consensus 91 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~ 170 (779)
.++|++++|+|+.++..+. ++|++|+|++|+|+++++..|.++++|++|+|++|+|++ ..+..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCC
Confidence 5789999999998766653 899999999999999999999999999999999999986 5667789999999999999
Q ss_pred ceeEeecCCCccCCCCCcccEEEccCCCCCCcC
Q 004020 171 ANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPI 203 (779)
Q Consensus 171 n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~ 203 (779)
|+|++..++.|. .+++|++|+|++|.++...
T Consensus 88 N~l~~~~~~~~~--~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFD--NLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTT--TCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhc--CCCCCCEEEeCCCCCCCCc
Confidence 999977777776 7999999999999998543
No 396
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=8.5e-13 Score=125.88 Aligned_cols=106 Identities=16% Similarity=0.257 Sum_probs=93.8
Q ss_pred CcEEEcccCccccCCCCCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccC
Q 004020 91 LTVLEVMKNKLTGQIPSLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANG 170 (779)
Q Consensus 91 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~ 170 (779)
-+.+++++|+|+.+++.+. ++|++|+|++|+|+++++..|.++++|++|+|++|+|.+ ..+..|.++++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCC
Confidence 3789999999987666664 899999999999999999999999999999999999987 4556689999999999999
Q ss_pred ceeEeecCCCccCCCCCcccEEEccCCCCCC
Q 004020 171 ANITGTIPDFLGGDTIPGLMHLHLAFNFLQG 201 (779)
Q Consensus 171 n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~ 201 (779)
|+|++..+..|. .+++|++|+|++|.+..
T Consensus 91 N~l~~l~~~~~~--~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFD--NLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTT--TCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhc--cccCCCEEEeCCCCccc
Confidence 999976666675 79999999999999984
No 397
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=6.2e-12 Score=136.55 Aligned_cols=260 Identities=12% Similarity=0.151 Sum_probs=175.2
Q ss_pred EEEEEecCCCccccCCccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEccc
Q 004020 67 VTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDY 145 (779)
Q Consensus 67 v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 145 (779)
++.+.+. ++++.+-..+|.+. +|+.++|..| ++.+.. +|.++ +|+.+.|.+ .++.|...+|.++++|+.++|+.
T Consensus 115 l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 3444443 34564556678775 7999999887 776666 78884 799999996 89999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCC
Q 004020 146 NSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSK 225 (779)
Q Consensus 146 N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~ 225 (779)
|++.. .....|. ..+|+.+.+..+ ++..-...|. .+++|+.++|..| ++..-...|..
T Consensus 190 n~l~~-I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~--~~~~L~~l~l~~~-l~~I~~~aF~~---------------- 247 (401)
T 4fdw_A 190 TKITK-LPASTFV-YAGIEEVLLPVT-LKEIGSQAFL--KTSQLKTIEIPEN-VSTIGQEAFRE---------------- 247 (401)
T ss_dssp SCCSE-ECTTTTT-TCCCSEEECCTT-CCEECTTTTT--TCTTCCCEECCTT-CCEECTTTTTT----------------
T ss_pred CcceE-echhhEe-ecccCEEEeCCc-hheehhhHhh--CCCCCCEEecCCC-ccCcccccccc----------------
Confidence 99976 3334554 799999999855 7756566665 7899999999875 55333334432
Q ss_pred CCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccc-----cccChhhhCCCCCCEEEccCcccccc
Q 004020 226 LNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLT-----GIVPSSLVNLHSLAVVNLTNNLFQGQ 299 (779)
Q Consensus 226 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~g~ 299 (779)
++|+.+.| .|.++...+ .|.++++|+.+++.+|.+. ...+.+|.++++|+.++|.+ .++..
T Consensus 248 -----------~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I 314 (401)
T 4fdw_A 248 -----------SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL 314 (401)
T ss_dssp -----------CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred -----------CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE
Confidence 45666666 334444333 3666666666666666553 34456666677777777663 24322
Q ss_pred CCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccC
Q 004020 300 TPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKN 379 (779)
Q Consensus 300 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 379 (779)
....| ....+|+.++|..
T Consensus 315 ~~~aF--------------------------------------------------------------~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 315 GQGLL--------------------------------------------------------------GGNRKVTQLTIPA 332 (401)
T ss_dssp CTTTT--------------------------------------------------------------TTCCSCCEEEECT
T ss_pred hhhhh--------------------------------------------------------------cCCCCccEEEECc
Confidence 22111 1112566666644
Q ss_pred ccccccccccccccccCCeEeccCccccccCCccCCCCC-CCCceeccCCcc
Q 004020 380 LGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLP-SLEMLDVSNNHL 430 (779)
Q Consensus 380 n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~L~Ls~N~l 430 (779)
| ++..-+..|.++ +|+.|++++|.+.-..+..|..++ .+..|++..|.+
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 3 554445678888 899999999988855556677774 678888877754
No 398
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=2.2e-12 Score=138.01 Aligned_cols=106 Identities=20% Similarity=0.328 Sum_probs=82.3
Q ss_pred CcceeeEeCCCCcEEEEEecCC-CccccCCccccCCCCCcEEEccc-CccccCCC-CCCCCCCccEEecCCCCCCCCCcc
Q 004020 54 CKWKHIQCSPSNRVTRIQIGGQ-NIEGTLPKELNSLSSLTVLEVMK-NKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSD 130 (779)
Q Consensus 54 C~w~gv~c~~~~~v~~l~l~~~-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~ 130 (779)
|.|..|.|+ ++ +|+ .+|. |..+++|++|+|++ |+|+++++ .|.+|++|++|+|++|+|+++++.
T Consensus 8 C~~~~v~~~-----------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 8 HGSSGLRCT-----------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp SSSSCEECC-----------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred ccCCEEEcC-----------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence 666666664 44 677 5788 99999999999996 99998887 799999999999999999999999
Q ss_pred cccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCceeE
Q 004020 131 FFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANIT 174 (779)
Q Consensus 131 ~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 174 (779)
.|.+|++|++|+|++|+|.+ ..+..|..++ |+.|+|.+|.+.
T Consensus 75 ~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp GGGSCSCCCEEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred HhcCCcCCCEEeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence 99999999999999999975 3333343333 555555555544
No 399
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.30 E-value=8.4e-12 Score=127.83 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=115.9
Q ss_pred HHHhhcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEEeCCeE
Q 004020 585 LRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCLDGNER 663 (779)
Q Consensus 585 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~ 663 (779)
+....+.|++...++.|+.+.||++... ++.+++|+...... .....+.+|+++++.+. +..+.++++++...+..
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~--~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~ 85 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYK--GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS 85 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGT--TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccC--CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence 3455678988899999999999999754 68999999865321 11235889999999885 67788999999998999
Q ss_pred EEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCC------------------------------
Q 004020 664 LLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLA------------------------------ 713 (779)
Q Consensus 664 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~------------------------------ 713 (779)
|+||||++|.++.+.+. +......++.++++++..||+..
T Consensus 86 ~lv~e~i~G~~l~~~~~----------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (263)
T 3tm0_A 86 NLLMSEADGVLCSEEYE----------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDC 155 (263)
T ss_dssp EEEEECCSSEEHHHHCC----------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSG
T ss_pred EEEEEecCCeehhhccC----------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccc
Confidence 99999999999876531 11123477889999999999710
Q ss_pred --------------------------CCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 714 --------------------------HQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 714 --------------------------~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
...++|+|++|.||+++++..+.|+||+.+...
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~g 214 (263)
T 3tm0_A 156 ENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRA 214 (263)
T ss_dssp GGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred ccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcccC
Confidence 145899999999999987656679999987543
No 400
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=1.7e-13 Score=147.42 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=46.5
Q ss_pred hcCCCCccEEEeecCcccCCC----C-CCCCCCCCcEEEccCCccccc----cChhhhCCCCCCEEEccCcccccc
Q 004020 233 IQNMTSLTQLWLHGNSFTGPL----P-DLSGLSSLQDFSVRDNQLTGI----VPSSLVNLHSLAVVNLTNNLFQGQ 299 (779)
Q Consensus 233 ~~~l~~L~~L~L~~N~l~~~~----~-~~~~l~~L~~L~l~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ 299 (779)
+..+++|++|+|++|.|+..- . .+...++|+.|+|++|.|+.. ++..+...++|++|+|++|.|+..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 345677888888888776421 2 255567788888888888643 445566678888888888888643
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=2.1e-11 Score=130.45 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=88.8
Q ss_pred cEEEcccC-ccccCCCCCCCCCCccEEecCC-CCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEecc
Q 004020 92 TVLEVMKN-KLTGQIPSLSGLSSLQEVLFDD-NNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSAN 169 (779)
Q Consensus 92 ~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~ 169 (779)
..++++++ +|+.+++ +..+++|++|+|++ |+|+++++..|.+|++|++|+|++|+|.+ ..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCC
Confidence 35688888 8998777 99999999999996 99999999999999999999999999987 677788999999999999
Q ss_pred CceeEeecCCCccCCCCCcccEEEccCCCCCC
Q 004020 170 GANITGTIPDFLGGDTIPGLMHLHLAFNFLQG 201 (779)
Q Consensus 170 ~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~ 201 (779)
+|+|++..+..+. .++ |++|+|++|.|..
T Consensus 89 ~N~l~~~~~~~~~--~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQ--GLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTC--SCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcc--cCC-ceEEEeeCCCccC
Confidence 9999865555553 343 8999999998873
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.8e-13 Score=147.16 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=26.0
Q ss_pred cccccccccCCeEeccCccccc----cCCccCCCCCCCCceeccCCcccc
Q 004020 387 SSNFSRLTSLRQLMLSGNELTG----TIPKELTTLPSLEMLDVSNNHLFG 432 (779)
Q Consensus 387 p~~~~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~l~g 432 (779)
+..+...+.|+.|+|++|+|+. .++..+...++|++|||++|.|+.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3444455566666666666653 233344445666666666666653
No 403
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.14 E-value=3.9e-11 Score=122.61 Aligned_cols=140 Identities=17% Similarity=0.126 Sum_probs=102.3
Q ss_pred hcCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCc--cceEeeEEEeCCeEEEE
Q 004020 589 TNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRH--LVGLLGYCLDGNERLLV 666 (779)
Q Consensus 589 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~~~~~~~~~~~lv 666 (779)
...|.+....+.|..+.||++...+|..+++|..... ....+.+|+++++.+.+.+ +.+++++...++..++|
T Consensus 19 ~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v 93 (264)
T 1nd4_A 19 LFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLL 93 (264)
T ss_dssp TTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC-----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEE
T ss_pred cCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc-----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEE
Confidence 3445554443456669999998777888999987543 1235778999998886444 56688888888889999
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------------------------
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLA--------------------------------- 713 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--------------------------------- 713 (779)
|||++|.++. .. ..+ ...++.++++.|..||+..
T Consensus 94 ~e~i~G~~l~--~~--------~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (264)
T 1nd4_A 94 LGEVPGQDLL--SS--------HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDE 160 (264)
T ss_dssp EECCSSEETT--TS--------CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCG
T ss_pred EEecCCcccC--cC--------cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhh
Confidence 9999998873 21 011 2356778888888888632
Q ss_pred ----------------------CCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 714 ----------------------HQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 714 ----------------------~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
...++|+|++|.||++++++.+.|+|||.+...
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g 215 (264)
T 1nd4_A 161 EHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVA 215 (264)
T ss_dssp GGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred hccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence 112999999999999987766779999998654
No 404
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=1.9e-09 Score=117.26 Aligned_cols=290 Identities=15% Similarity=0.132 Sum_probs=159.0
Q ss_pred CccccCCCCCcEEEcccCccccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCC-----------
Q 004020 82 PKELNSLSSLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFD----------- 149 (779)
Q Consensus 82 p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------- 149 (779)
..+|.++++|+.+.|..+ ++.+.. +|.++++|+.++|.++ ++.|...+|.++.+|+.+.+..+--.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 345666666666666533 444433 5666666666666543 55555566666666655554332100
Q ss_pred ---------CCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccC
Q 004020 150 ---------SWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNG 219 (779)
Q Consensus 150 ---------~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~ 219 (779)
.......|.++++|+.+.+.++..+ .-...|. .+.+|+.+++..| ++......+.. ..|+.+.+..
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~--~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFS--GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTT--TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCccccccchhhhcccCCCcEEecCCccce-ecccccc--CCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 0012356888888999888765432 3344453 6788888888766 44333344443 4566665544
Q ss_pred CCCCCCCCCchhhhcCCCCccEEEeecCcccCCCC-CCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccc
Q 004020 220 QKGDSKLNGSVAVIQNMTSLTQLWLHGNSFTGPLP-DLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 220 n~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
+.... -......++|+.+.+..+ ++.... .+.++..|+.+.+..+... .....|..+..|+.+.+..+.+..
T Consensus 218 ~~~~i-----~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 218 SLYYL-----GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp TCCEE-----CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT
T ss_pred CceEe-----ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc
Confidence 32111 011224567777777643 332222 4677788888888777554 556777778888877776654321
Q ss_pred cCCCCCCCcccccccCCCCcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEcc
Q 004020 299 QTPKFNSPVRFDMAKGSNSFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLK 378 (779)
Q Consensus 299 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 378 (779)
.. +.....+. . +..+..+. .++ ...+....+|+.++|.
T Consensus 291 ~~--F~~~~~L~--------~---------------------i~l~~~i~--~I~---------~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 291 KT--FYGCSSLT--------E---------------------VKLLDSVK--FIG---------EEAFESCTSLVSIDLP 328 (394)
T ss_dssp TT--TTTCTTCC--------E---------------------EEECTTCC--EEC---------TTTTTTCTTCCEECCC
T ss_pred cc--cccccccc--------c---------------------cccccccc--eec---------hhhhcCCCCCCEEEeC
Confidence 10 00000000 0 00000000 000 0012223467777776
Q ss_pred CccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCC
Q 004020 379 NLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNN 428 (779)
Q Consensus 379 ~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 428 (779)
++ ++..-...|.++++|+.++|..| ++-.-..+|..+++|+.++|..|
T Consensus 329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 329 YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44 55444567888888888888776 66344567888888888888654
No 405
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.99 E-value=1.5e-09 Score=116.39 Aligned_cols=145 Identities=15% Similarity=0.220 Sum_probs=107.3
Q ss_pred cccceecccccEEEEEEEEcCCcEEEEEEec--ccccChhHHHHHHHHHHHHHcCC--CCccceEeeEEEeC---CeEEE
Q 004020 593 SEENVLGRGGFGTVYKGELHDGTKIAVKRME--SAVVSEKGFAEFKSEIAVLTKVR--HRHLVGLLGYCLDG---NERLL 665 (779)
Q Consensus 593 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~--~~~~~~~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~---~~~~l 665 (779)
...+.++.|.++.||++... +..+++|+.. .... ......+.+|.++++.+. +..+++++.++.+. +..|+
T Consensus 41 ~~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~-~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~ 118 (359)
T 3dxp_A 41 LSVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKL-LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY 118 (359)
T ss_dssp CEEEECCC-CCSCEEEEECS-SCEEEEECCCC-----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred ceEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence 34678999999999999876 4678888775 3221 122356788999999997 45678888888766 45899
Q ss_pred EEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCC--------------------------------
Q 004020 666 VYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLA-------------------------------- 713 (779)
Q Consensus 666 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~-------------------------------- 713 (779)
||||++|..+.+.. ...++..++..++.++++.|..||+..
T Consensus 119 vme~v~G~~l~~~~-------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (359)
T 3dxp_A 119 IMEFVSGRVLWDQS-------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSET 191 (359)
T ss_dssp EEECCCCBCCCCTT-------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCC
T ss_pred EEEecCCeecCCCc-------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCC
Confidence 99999998774321 123567788899999999999999731
Q ss_pred -----------------------CCCcEEcCCCCCCEEEcCCCc--EEEEeeccceec
Q 004020 714 -----------------------HQSFIHRDLKPSNILLGDDMR--AKVADFGLVRLA 746 (779)
Q Consensus 714 -----------------------~~~ivHrDlkp~NIll~~~~~--~kl~DFG~a~~~ 746 (779)
...++|+|++|.||+++.++. +.|+||+.+..-
T Consensus 192 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g 249 (359)
T 3dxp_A 192 ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG 249 (359)
T ss_dssp SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence 256899999999999987653 689999998753
No 406
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.98 E-value=3.2e-08 Score=107.46 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=67.6
Q ss_pred EEEEEecCCCccccCCccccCCCCCcEEEcccCc---cccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEE
Q 004020 67 VTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNK---LTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTIS 142 (779)
Q Consensus 67 v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~---l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 142 (779)
++.+.+.. .++.+-..+|.++++|+.+.+..|. ++.+.. +|.++.+|+.+.+.++ ++.+...+|..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 55555543 2444445566667777777766653 443333 5666666666666543 5666666666777777777
Q ss_pred cccCCCCCCCCcccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccC
Q 004020 143 LDYNSFDSWVIPESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAF 196 (779)
Q Consensus 143 Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~ 196 (779)
+..+.- . .....|..+.+|+.+.+.++ ++..-...|. ...|+.+.+..
T Consensus 144 lp~~~~-~-I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~---~~~l~~i~ip~ 191 (394)
T 4gt6_A 144 IPEGVT-S-VADGMFSYCYSLHTVTLPDS-VTAIEERAFT---GTALTQIHIPA 191 (394)
T ss_dssp CCTTCC-E-ECTTTTTTCTTCCEEECCTT-CCEECTTTTT---TCCCSEEEECT
T ss_pred ccceee-e-ecccceecccccccccccce-eeEecccccc---ccceeEEEECC
Confidence 654432 1 23455666666666666544 3322233332 34555555543
No 407
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.96 E-value=1.8e-08 Score=109.48 Aligned_cols=271 Identities=11% Similarity=0.023 Sum_probs=174.4
Q ss_pred cccCCC-CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCcee------
Q 004020 101 LTGQIP-SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGANI------ 173 (779)
Q Consensus 101 l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n~l------ 173 (779)
++.+.. +|.++++|+.+.|.+ .++.|...+|.++++|++++|..+ +.. .....|.++.+|+.+.+..+-.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKM-IGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceE-ccchhhcccccchhhcccCceeeeccee
Confidence 555555 899999999999985 599999999999999999999866 433 3456788888888777654311
Q ss_pred ---------------EeecCCCccCCCCCcccEEEccCCCCCCcCCCcccc-CCcceeeccCCCCCCCCCCchhhhcCCC
Q 004020 174 ---------------TGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGK-SSIQTLWLNGQKGDSKLNGSVAVIQNMT 237 (779)
Q Consensus 174 ---------------~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 237 (779)
...-...|. .+++|+.+.+.++..+ .....|.. .+|+.+.+..+ +... ...++.++.
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~--~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I---~~~~F~~~~ 208 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFA--TCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKII---RDYCFAECI 208 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTT--TCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEE---CTTTTTTCT
T ss_pred eecccccccccCccccccchhhhc--ccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEe---Cchhhcccc
Confidence 111122333 6789999999766432 33444544 56888887655 2211 123466788
Q ss_pred CccEEEeecCcccCCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccccCCCCCCCc-ccccccCCC
Q 004020 238 SLTQLWLHGNSFTGPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQGQTPKFNSPV-RFDMAKGSN 316 (779)
Q Consensus 238 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~-~~~~~~~~~ 316 (779)
.|+.+.+..+...- -.......+|+.+.+.++. +..-...+..+..|+.+.+..+...- ....+... .+......
T Consensus 209 ~L~~i~~~~~~~~i-~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i-~~~~F~~~~~l~~~~~~- 284 (394)
T 4fs7_A 209 LLENMEFPNSLYYL-GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRI-GGSLFYNCSGLKKVIYG- 284 (394)
T ss_dssp TCCBCCCCTTCCEE-CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEE-CSCTTTTCTTCCEEEEC-
T ss_pred ccceeecCCCceEe-ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCccee-eccccccccccceeccC-
Confidence 89888887765432 2234456789999987553 43556788899999999998775431 11111110 00000000
Q ss_pred CcccCCCCcccCccchhhhhhcccCCCchhcccccCCCCCCCCCCCccccCCCCCeEEEEccCccccccccccccccccC
Q 004020 317 SFCLDDAGVACDGRVNVLLSIVKSVGYPAVLAESWKGNNPCNSDWKGVSCDAGGNITVVNLKNLGLSGTISSNFSRLTSL 396 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~g~~p~~~~~l~~L 396 (779)
... . ....+....+|+.+.+..+ +...-...|.++++|
T Consensus 285 ----------------------------~~~----i---------~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 285 ----------------------------SVI----V---------PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp ----------------------------SSE----E---------CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ----------------------------cee----e---------ccccccccccccccccccc-cceechhhhcCCCCC
Confidence 000 0 0011223347888888755 554456678999999
Q ss_pred CeEeccCccccccCCccCCCCCCCCceeccCC
Q 004020 397 RQLMLSGNELTGTIPKELTTLPSLEMLDVSNN 428 (779)
Q Consensus 397 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 428 (779)
+.++|..+ ++-.-..+|..+++|+.+++..|
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 99999754 77333577889999999998766
No 408
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=3.3e-10 Score=120.68 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=43.3
Q ss_pred CCcEEEEEecCCCccc-c-------CCccccCCCCCcEEEcccCcccc---------CC-CCCCCCCCccEEecCCCCCC
Q 004020 64 SNRVTRIQIGGQNIEG-T-------LPKELNSLSSLTVLEVMKNKLTG---------QI-PSLSGLSSLQEVLFDDNNFT 125 (779)
Q Consensus 64 ~~~v~~l~l~~~~l~~-~-------~p~~l~~l~~L~~L~Ls~N~l~~---------~~-~~~~~l~~L~~L~l~~N~l~ 125 (779)
..+|+.|.+......| . +..++..+++|+.|.+.++.... .+ +.+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3468888888766553 2 23345567888888886653311 11 12344556666666555211
Q ss_pred CCCcccccCCCCccEEEcccCCC
Q 004020 126 SVPSDFFKGLTSLQTISLDYNSF 148 (779)
Q Consensus 126 ~~~~~~~~~l~~L~~L~Ls~N~l 148 (779)
.+++ + .+++|++|+|..+.+
T Consensus 186 ~l~~--~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 186 SIGK--K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp BCCS--C-BCTTCSEEEEECSBC
T ss_pred eecc--c-cCCCCcEEEEecCCC
Confidence 2222 2 245555555555544
No 409
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=1.3e-09 Score=116.10 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=27.8
Q ss_pred CeEEEEccCcccccc----ccccccccccCCeEeccCccccccCCccCCC-CCCCCceeccCCc
Q 004020 371 NITVVNLKNLGLSGT----ISSNFSRLTSLRQLMLSGNELTGTIPKELTT-LPSLEMLDVSNNH 429 (779)
Q Consensus 371 ~L~~L~Ls~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~-l~~L~~L~Ls~N~ 429 (779)
+|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.|+...-..+.. + ...+++++|+
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 344444444444432 3334445667777777777666432222221 1 2345666654
No 410
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.78 E-value=2.7e-07 Score=100.09 Aligned_cols=158 Identities=12% Similarity=0.123 Sum_probs=108.4
Q ss_pred cCCccccCCC-CCcEEEcccCccccCCC-CCCCCCCccEEecCCCC---CCCCCcccccCCCCccEEEcccCCCCCCCCc
Q 004020 80 TLPKELNSLS-SLTVLEVMKNKLTGQIP-SLSGLSSLQEVLFDDNN---FTSVPSDFFKGLTSLQTISLDYNSFDSWVIP 154 (779)
Q Consensus 80 ~~p~~l~~l~-~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p 154 (779)
+-..+|.+.. .|+.+.+-.+ ++.+.. +|.++++|+.+.+.+|. ++.|...+|.++.+|+.+.+..+ +.. ...
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~-I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE-IDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE-ECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce-ehh
Confidence 3345677774 5999999765 766665 89999999999998875 88889999999999999988766 332 345
Q ss_pred ccccCCCCCceEeccCceeEeecCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchhhhc
Q 004020 155 ESLKDATGLQRFSANGANITGTIPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVAVIQ 234 (779)
Q Consensus 155 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 234 (779)
..|..+.+|+.+.+..+- +......|. .+..|+.+.+..+ ++..-...|....|+.+.+..+-.. -...++.
T Consensus 131 ~aF~~c~~L~~i~lp~~~-~~I~~~~F~--~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~----i~~~af~ 202 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGV-TSVADGMFS--YCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR----IGTNAFS 202 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE----ECTTTTT
T ss_pred hhhhhhccccccccccee-eeeccccee--cccccccccccce-eeEeccccccccceeEEEECCcccc----cccchhh
Confidence 788999999999997553 334444554 6889999998765 4434445555566777766543211 0112344
Q ss_pred CCCCccEEEeecCc
Q 004020 235 NMTSLTQLWLHGNS 248 (779)
Q Consensus 235 ~l~~L~~L~L~~N~ 248 (779)
.+.++.......+.
T Consensus 203 ~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 203 ECFALSTITSDSES 216 (394)
T ss_dssp TCTTCCEEEECCSS
T ss_pred hccccceecccccc
Confidence 55666666555443
No 411
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=7.3e-10 Score=111.86 Aligned_cols=22 Identities=14% Similarity=-0.064 Sum_probs=15.3
Q ss_pred CCcceeeEeCCCC-cEEEEEecC
Q 004020 53 PCKWKHIQCSPSN-RVTRIQIGG 74 (779)
Q Consensus 53 ~C~w~gv~c~~~~-~v~~l~l~~ 74 (779)
.|.|.|+.|++.+ +|+.+-..+
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSS 99 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEEC
T ss_pred HHhcCcEEECCCCCEEEEEEecC
Confidence 4889999998643 665555543
No 412
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.60 E-value=2.4e-07 Score=97.35 Aligned_cols=137 Identities=16% Similarity=0.251 Sum_probs=101.4
Q ss_pred CCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCC----CccceEeeEEEeCCeEEEE
Q 004020 591 NFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRH----RHLVGLLGYCLDGNERLLV 666 (779)
Q Consensus 591 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~~~~~~~~~~~~~lv 666 (779)
.+...+.++.|....||++ +..+++|+.... .....+.+|.++++.+.+ ..+.+++++ +..++|
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~----~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lv 105 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD----SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNI 105 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH----HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH----HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEE
Confidence 5666788999999999998 677888876432 234568899999988865 224455544 567899
Q ss_pred EEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC--------------------------------
Q 004020 667 YEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAH-------------------------------- 714 (779)
Q Consensus 667 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~-------------------------------- 714 (779)
|||++|.++.+... ..++..++..++.++++.+..||+...
T Consensus 106 me~i~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (320)
T 3r70_A 106 MKYIKGERITYEQY-------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKE 178 (320)
T ss_dssp EECCCCBCCCHHHH-------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeecCCcccccccc-------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhc
Confidence 99999988864321 134566677788888888888885321
Q ss_pred ----------------------------CCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 715 ----------------------------QSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 715 ----------------------------~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
..++|+|++|.||+++.+..+.|+||+.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 179 QLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred ccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 23499999999999998666799999998654
No 413
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=7.1e-06 Score=88.33 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=44.0
Q ss_pred CCCeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCC
Q 004020 369 GGNITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNN 428 (779)
Q Consensus 369 ~~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 428 (779)
..+|+.+++.++.+...-...|.++++|+.++|..+ ++-.-..+|.++++|+.+.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 347888888888887656678888899999999754 66233457888888888877544
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.50 E-value=2.6e-07 Score=96.35 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=98.8
Q ss_pred cceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCc--cceEeeEEEeCC---eEEEEEE
Q 004020 595 ENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRH--LVGLLGYCLDGN---ERLLVYE 668 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~~~~~~~~~~---~~~lv~e 668 (779)
.+.++.|....||++. ..+++|+.... .....+.+|.++++.+. +.. +.+++......+ ..|+|||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~ 96 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFT 96 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEc
Confidence 4668999999999863 56888875432 34567889999998884 333 344444433332 3489999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------------------------
Q 004020 669 YMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLA----------------------------------- 713 (779)
Q Consensus 669 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~----------------------------------- 713 (779)
+++|.++.+... ..++..++..++.|+++.+..||+..
T Consensus 97 ~i~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (304)
T 3sg8_A 97 KIKGVPLTPLLL-------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQ 169 (304)
T ss_dssp CCCCEECCHHHH-------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHH
T ss_pred ccCCeECCcccc-------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCccc
Confidence 999988865332 13566777788888888888888511
Q ss_pred --------------------CCCcEEcCCCCCCEEEcC--CCcEEEEeeccceec
Q 004020 714 --------------------HQSFIHRDLKPSNILLGD--DMRAKVADFGLVRLA 746 (779)
Q Consensus 714 --------------------~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~ 746 (779)
...++|+|++|.||++++ ...+.|+||+.+...
T Consensus 170 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~ 224 (304)
T 3sg8_A 170 MKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS 224 (304)
T ss_dssp HHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence 135799999999999998 456889999998764
No 415
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.43 E-value=1.2e-06 Score=89.53 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=98.5
Q ss_pred ceecccccE-EEEEEEEc-CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEEeCCeEEEEEEecCC
Q 004020 596 NVLGRGGFG-TVYKGELH-DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCLDGNERLLVYEYMPQ 672 (779)
Q Consensus 596 ~~lg~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~ 672 (779)
+.+..|..+ .||+.... ++..+++|+-... ...++.+|...++.+. +--+.++++++.+.+..|+|||+++|
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G 104 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS-----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPG 104 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETH-----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCS
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCC-----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCC
Confidence 345556554 68988665 4667889975432 3456788999998885 33467888999999999999999999
Q ss_pred CChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------------------------------
Q 004020 673 GTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLA--------------------------------------- 713 (779)
Q Consensus 673 gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--------------------------------------- 713 (779)
.++.+..... ......+..+++..|..||+..
T Consensus 105 ~~~~~~~~~~---------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (272)
T 4gkh_A 105 KTAFQVLEEY---------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWP 175 (272)
T ss_dssp EEHHHHHHHC---------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCC
T ss_pred ccccccccCC---------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchH
Confidence 8887654221 1123356667777777777521
Q ss_pred ----------------CCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 714 ----------------HQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 714 ----------------~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
...++|+|+.|.||++++++.+-|+||+.+..-
T Consensus 176 ~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g 224 (272)
T 4gkh_A 176 VEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA 224 (272)
T ss_dssp HHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence 112789999999999998777789999988654
No 416
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.42 E-value=1.9e-06 Score=89.75 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=95.3
Q ss_pred cceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCC---ccceEeeEEE-eCCeEEEEEEec
Q 004020 595 ENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHR---HLVGLLGYCL-DGNERLLVYEYM 670 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~-~~~~~~lv~e~~ 670 (779)
.+.++.|....||+. +..+++|+-.. ......+.+|.++++.+.+. .+.+.+.++. ..+..++||||+
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~----~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i 95 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS----QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKV 95 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS----HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC----chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEecc
Confidence 466888888999998 56788887432 23456789999999999752 3566777664 345678999999
Q ss_pred CCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcC--------------------------------------
Q 004020 671 PQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGL-------------------------------------- 712 (779)
Q Consensus 671 ~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-------------------------------------- 712 (779)
+|..+.+.... .++..+...++.++++.|..||+.
T Consensus 96 ~G~~l~~~~~~-------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~ 168 (306)
T 3tdw_A 96 QGQILGEDGMA-------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESL 168 (306)
T ss_dssp CSEECHHHHHT-------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CCeECchhhhh-------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhh
Confidence 99887653211 133444455555555555555532
Q ss_pred -------------------CCCCcEEcCCCCCCEEEcC---CCc-EEEEeeccceec
Q 004020 713 -------------------AHQSFIHRDLKPSNILLGD---DMR-AKVADFGLVRLA 746 (779)
Q Consensus 713 -------------------~~~~ivHrDlkp~NIll~~---~~~-~kl~DFG~a~~~ 746 (779)
....++|+|++|.||+++. ++. +.|+||+.+..-
T Consensus 169 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g 225 (306)
T 3tdw_A 169 RDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS 225 (306)
T ss_dssp HHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred HHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence 1235699999999999987 455 489999988654
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.33 E-value=1.6e-06 Score=89.23 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=60.6
Q ss_pred CcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCC---ccceEeeEEEeCCeEEEEEE
Q 004020 592 FSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHR---HLVGLLGYCLDGNERLLVYE 668 (779)
Q Consensus 592 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~lv~e 668 (779)
....+.|+.|.++.||+++..+|+.+++|+..... ......+.+|++.++.+++. .+++++++. ..++|||
T Consensus 17 ~~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~--~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme 90 (288)
T 3d1u_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDA--PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAME 90 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC--CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEE
T ss_pred ccceeeeCCcchhheEEEEeCCCCeEEEEecCCCC--cchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEE
Confidence 34467899999999999998889999999864321 11235688999999999865 577777763 3689999
Q ss_pred ecCCCCh
Q 004020 669 YMPQGTL 675 (779)
Q Consensus 669 ~~~~gsL 675 (779)
|++++.+
T Consensus 91 ~l~g~~~ 97 (288)
T 3d1u_A 91 WVDERPP 97 (288)
T ss_dssp CCCCCCC
T ss_pred ecccCCC
Confidence 9999864
No 418
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.30 E-value=4.5e-06 Score=89.06 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=59.1
Q ss_pred cCCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCc--cceEeeEEEeC-CeEEEE
Q 004020 590 NNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRH--LVGLLGYCLDG-NERLLV 666 (779)
Q Consensus 590 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~~~~~~~-~~~~lv 666 (779)
......+.++.|....+|+.+. ++..+++|..... ..+.+|..+++.+.... +.+++.++... +..|+|
T Consensus 41 ~~~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv 112 (362)
T 3ovc_A 41 DSVSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-------DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCI 112 (362)
T ss_dssp SCCEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-------HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEE
T ss_pred CCCceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-------hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEE
Confidence 3445567889999999999875 5788999987432 25788999998886533 56677776654 568999
Q ss_pred EEecCCCChh
Q 004020 667 YEYMPQGTLS 676 (779)
Q Consensus 667 ~e~~~~gsL~ 676 (779)
|||++|..+.
T Consensus 113 ~e~l~G~~l~ 122 (362)
T 3ovc_A 113 SRRAQGVTLQ 122 (362)
T ss_dssp EECCCSEETT
T ss_pred EEecCCCCcc
Confidence 9999986654
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=7.5e-08 Score=92.38 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=40.8
Q ss_pred hhcCCCCccEEEeecC-cccCC----C-CCCCCCCCCcEEEccCCccccc----cChhhhCCCCCCEEEccCcccc
Q 004020 232 VIQNMTSLTQLWLHGN-SFTGP----L-PDLSGLSSLQDFSVRDNQLTGI----VPSSLVNLHSLAVVNLTNNLFQ 297 (779)
Q Consensus 232 ~~~~l~~L~~L~L~~N-~l~~~----~-~~~~~l~~L~~L~l~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 297 (779)
.+...++|++|+|++| .+... + ..+...++|++|+|++|+|... +...+...++|++|+|++|.|+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3455677888888887 76531 1 1245566777777777777532 3344455566777777777665
No 420
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.16 E-value=3.2e-06 Score=90.22 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=55.9
Q ss_pred ccee-cccccEEEEEEEEc-------CCcEEEEEEeccccc-ChhHHHHHHHHHHHHHcCC-C--CccceEeeEEEeC--
Q 004020 595 ENVL-GRGGFGTVYKGELH-------DGTKIAVKRMESAVV-SEKGFAEFKSEIAVLTKVR-H--RHLVGLLGYCLDG-- 660 (779)
Q Consensus 595 ~~~l-g~G~~g~Vy~~~~~-------~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~-h--~niv~~~~~~~~~-- 660 (779)
.+.| +.|....+|+.... +++.+++|+...... .......+.+|+.+++.+. + -.+.+++.++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 4667 88889999998764 267888987654220 0001135678888888874 3 3467778777655
Q ss_pred -CeEEEEEEecCCCChhh
Q 004020 661 -NERLLVYEYMPQGTLSR 677 (779)
Q Consensus 661 -~~~~lv~e~~~~gsL~~ 677 (779)
+..|+||||++|..+.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 35689999999877653
No 421
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=1.7e-07 Score=89.86 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=43.7
Q ss_pred cCCCCccEEEeecCcccCC-----CCCCCCCCCCcEEEc--cCCccccc----cChhhhCCCCCCEEEccCcccc
Q 004020 234 QNMTSLTQLWLHGNSFTGP-----LPDLSGLSSLQDFSV--RDNQLTGI----VPSSLVNLHSLAVVNLTNNLFQ 297 (779)
Q Consensus 234 ~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~l--~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 297 (779)
...++|++|+|++|.|+.. ...+...++|++|+| ++|.|... +...+...++|+.|+|++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456677777777777642 123555677888888 77887643 3455666688999999988875
No 422
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=0.00022 Score=76.45 Aligned_cols=57 Identities=9% Similarity=0.135 Sum_probs=43.1
Q ss_pred CeEEEEccCccccccccccccccccCCeEeccCccccccCCccCCCCCCCCceeccCC
Q 004020 371 NITVVNLKNLGLSGTISSNFSRLTSLRQLMLSGNELTGTIPKELTTLPSLEMLDVSNN 428 (779)
Q Consensus 371 ~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 428 (779)
+|+.+.+..+ +...-...|.++++|+.+++.++.++-.-...|..+.+|+.++|..+
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 5666666543 44344557889999999999999998444678899999999999654
No 423
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=1.9e-06 Score=86.86 Aligned_cols=66 Identities=32% Similarity=0.366 Sum_probs=56.8
Q ss_pred CCCeEEEEccCccccc--cccccccccccCCeEeccCccccccCCccCCCCC--CCCceeccCCcccccCCC
Q 004020 369 GGNITVVNLKNLGLSG--TISSNFSRLTSLRQLMLSGNELTGTIPKELTTLP--SLEMLDVSNNHLFGKVPN 436 (779)
Q Consensus 369 ~~~L~~L~Ls~n~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~Ls~N~l~g~iP~ 436 (779)
.++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|++++.+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 3589999999999999 6778889999999999999999965 3344444 999999999999998873
No 424
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.96 E-value=7.4e-05 Score=78.91 Aligned_cols=144 Identities=19% Similarity=0.238 Sum_probs=80.2
Q ss_pred cceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-----CCccceEe-e--EEEeCCeEEEE
Q 004020 595 ENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-----HRHLVGLL-G--YCLDGNERLLV 666 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~~~-~--~~~~~~~~~lv 666 (779)
.+.|+.|..+.||++...++ .+++|+.... . .++..|..+++.+. .|.++... + +....+..+++
T Consensus 37 ~~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~---~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l 109 (346)
T 2q83_A 37 IDVIQGNQMALVWKVHTDSG-AVCLKRIHRP---E---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVV 109 (346)
T ss_dssp EEECC----CEEEEEEETTE-EEEEEEECSC---H---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEE
T ss_pred eeeccccccCcEEEEEeCCC-CEEEEecCCC---H---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEE
Confidence 34566677899999987654 5889988642 1 23334555554442 24433311 1 22346678999
Q ss_pred EEecCCCChh--------------hHhhhcccCC--C-------CCCCHHHH----------------------------
Q 004020 667 YEYMPQGTLS--------------RHLFNRKEEG--L-------KPLEWTRR---------------------------- 695 (779)
Q Consensus 667 ~e~~~~gsL~--------------~~l~~~~~~~--~-------~~~~~~~~---------------------------- 695 (779)
|||++|..+. ..++.....- . ..-.|...
T Consensus 110 ~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 189 (346)
T 2q83_A 110 YDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYL 189 (346)
T ss_dssp EECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred EEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 9999986542 1122111100 0 00122111
Q ss_pred ---HHHHHHHHHHHHHHHc----------CCCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 696 ---LTIALDVARGVEYLHG----------LAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 696 ---~~i~~qi~~~L~~LH~----------~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
..+..++..++++|+. .....++|+|+++.||+++.++.+.|+||+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 190 QEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 0111223445666652 0147899999999999998888899999998764
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.86 E-value=4.5e-05 Score=82.53 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=49.9
Q ss_pred cceecccccEEEEEEEEc-CCcEEEEEEeccccc--Ch---hHHHHHHHHHHHHHcCCC--C-ccceEeeEEEeCCeEEE
Q 004020 595 ENVLGRGGFGTVYKGELH-DGTKIAVKRMESAVV--SE---KGFAEFKSEIAVLTKVRH--R-HLVGLLGYCLDGNERLL 665 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~---~~~~~~~~E~~~l~~l~h--~-niv~~~~~~~~~~~~~l 665 (779)
.+.+|.|.++.||+++.. +++.+++|....... .. ....++..|.++++.+.. | .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 568999999999999754 468899998653321 00 122456778888887742 3 34455543 4555689
Q ss_pred EEEecCCC
Q 004020 666 VYEYMPQG 673 (779)
Q Consensus 666 v~e~~~~g 673 (779)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 426
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.68 E-value=0.00021 Score=74.00 Aligned_cols=142 Identities=17% Similarity=0.166 Sum_probs=93.0
Q ss_pred cccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC---CCccceEeeEEEeCCeEEEEEEe
Q 004020 593 SEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR---HRHLVGLLGYCLDGNERLLVYEY 669 (779)
Q Consensus 593 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~~~~~lv~e~ 669 (779)
...+.|+.|....+|+... ++..+++|+.... ....+.+|.+.++.+. ...+++++.+....+..++||||
T Consensus 39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~-----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~ 112 (312)
T 3jr1_A 39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINERS-----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEA 112 (312)
T ss_dssp CEEEEECCSSSSEEEEEES-SSCEEEEEEEEGG-----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEEC
T ss_pred eeeEEeCCccceeeeEEEE-CCCeEEEEeCCcc-----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEe
Confidence 3456799999999999876 4678888976532 2456888999888884 35688889888888889999999
Q ss_pred cCCCChhh-----------Hhhhccc-CC--C--------------CCCCHHHHH---HHH----------------HHH
Q 004020 670 MPQGTLSR-----------HLFNRKE-EG--L--------------KPLEWTRRL---TIA----------------LDV 702 (779)
Q Consensus 670 ~~~gsL~~-----------~l~~~~~-~~--~--------------~~~~~~~~~---~i~----------------~qi 702 (779)
+++..+.. .++.... .. . -.-+|.... ++. .++
T Consensus 113 l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l 192 (312)
T 3jr1_A 113 LNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLI 192 (312)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHH
T ss_pred ccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99875421 1222211 00 0 012344321 111 112
Q ss_pred HHHH-HHHHc-CCCCCcEEcCCCCCCEEEcCCCcEEEEeec
Q 004020 703 ARGV-EYLHG-LAHQSFIHRDLKPSNILLGDDMRAKVADFG 741 (779)
Q Consensus 703 ~~~L-~~LH~-~~~~~ivHrDlkp~NIll~~~~~~kl~DFG 741 (779)
+..+ ..|.. .....++|+|+.+.|++++.++ +.|+||.
T Consensus 193 ~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 193 VQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 2122 23321 1246799999999999999887 8999984
No 427
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.65 E-value=0.00014 Score=74.85 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCC---ccceEeeEEEeCCeEEEEE
Q 004020 591 NFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHR---HLVGLLGYCLDGNERLLVY 667 (779)
Q Consensus 591 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~lv~ 667 (779)
.....+.+|.|..+.||+++..+|+.|++|+...... .....+.+|++.|+.+.-. -+++++++ . ..++||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~--~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv~ 89 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAP--ALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLAM 89 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCC--CCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEEE
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCc--chhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEEE
Confidence 3455678999999999999999999999998654321 1223578899999888421 24455543 2 247899
Q ss_pred EecCCCCh
Q 004020 668 EYMPQGTL 675 (779)
Q Consensus 668 e~~~~gsL 675 (779)
||++++..
T Consensus 90 e~l~~~~~ 97 (288)
T 3f7w_A 90 EWVDERPP 97 (288)
T ss_dssp ECCCCCCC
T ss_pred EeecccCC
Confidence 99987643
No 428
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.54 E-value=0.00031 Score=76.51 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=46.0
Q ss_pred ccceecccccEEEEEEEEcCCcEEEEEEeccccc--Ch-----hHHHHHHHHHHHHH-cCCCCccceEeeEEEeCCeEEE
Q 004020 594 EENVLGRGGFGTVYKGELHDGTKIAVKRMESAVV--SE-----KGFAEFKSEIAVLT-KVRHRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 594 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~-----~~~~~~~~E~~~l~-~l~h~niv~~~~~~~~~~~~~l 665 (779)
..+.+|.|..+.||++.. +++.++||....... .. .....+..|+..+. ......+++++.+. .+..++
T Consensus 38 ~i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~l 114 (420)
T 2pyw_A 38 VIKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALI 114 (420)
T ss_dssp EEEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEE
T ss_pred EEEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEE
Confidence 357789999999999964 467899994322110 00 02223334443332 12234566777665 566799
Q ss_pred EEEec-CC
Q 004020 666 VYEYM-PQ 672 (779)
Q Consensus 666 v~e~~-~~ 672 (779)
||||+ ++
T Consensus 115 v~e~l~~g 122 (420)
T 2pyw_A 115 GMRYLEPP 122 (420)
T ss_dssp EECCCCTT
T ss_pred EEeecCCc
Confidence 99999 76
No 429
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.47 E-value=0.00058 Score=71.30 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=87.3
Q ss_pred eHHHHHHhhcCCcc-----cceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCc--cceE
Q 004020 581 SIQVLRNVTNNFSE-----ENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRH--LVGL 653 (779)
Q Consensus 581 ~~~~~~~~~~~~~~-----~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~ 653 (779)
+.+++..+..+|.. .+.|+.|....+|++...++ .+++|...... ...++..|..++..+.... +.++
T Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~----~~~~l~~e~~~l~~L~~~g~~vP~~ 82 (322)
T 2ppq_A 8 TEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV----EKNDLPFFLGLMQHLAAKGLSCPLP 82 (322)
T ss_dssp CHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-------CCHHHHHHHHHHHHHHTTCCCCCB
T ss_pred CHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC----CHHHHHHHHHHHHHHHHCCCCCCcc
Confidence 44556666666654 34566788899999987655 67889876521 1134556777776663211 2333
Q ss_pred ee------EEEeCCeEEEEEEecCCCChhh--------------HhhhcccC-CCC---CC---CHHHHHH---------
Q 004020 654 LG------YCLDGNERLLVYEYMPQGTLSR--------------HLFNRKEE-GLK---PL---EWTRRLT--------- 697 (779)
Q Consensus 654 ~~------~~~~~~~~~lv~e~~~~gsL~~--------------~l~~~~~~-~~~---~~---~~~~~~~--------- 697 (779)
+. +....+..+++|+|++|..+.. .++..... ... .. .|.....
T Consensus 83 ~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 162 (322)
T 2ppq_A 83 LPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEV 162 (322)
T ss_dssp CCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGT
T ss_pred cCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhh
Confidence 32 1123456789999999865321 01111000 000 00 1211100
Q ss_pred ---HHHHHHHHHHHHHcC----CCCCcEEcCCCCCCEEEcCCCcEEEEeecccee
Q 004020 698 ---IALDVARGVEYLHGL----AHQSFIHRDLKPSNILLGDDMRAKVADFGLVRL 745 (779)
Q Consensus 698 ---i~~qi~~~L~~LH~~----~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 745 (779)
+...+.+.+++++.. ...+++|+|+++.||++++++.+.|+||+.+..
T Consensus 163 ~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 163 EKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp STTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 011233445555421 135789999999999998876668999998754
No 430
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.27 E-value=6.2e-05 Score=70.20 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=47.5
Q ss_pred cEEEEEecCCCccccCCccccCCCCCcEEEcccCc-cccCC-CCCCCC----CCccEEecCCCC-CCCCCcccccCCCCc
Q 004020 66 RVTRIQIGGQNIEGTLPKELNSLSSLTVLEVMKNK-LTGQI-PSLSGL----SSLQEVLFDDNN-FTSVPSDFFKGLTSL 138 (779)
Q Consensus 66 ~v~~l~l~~~~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~l----~~L~~L~l~~N~-l~~~~~~~~~~l~~L 138 (779)
++++||++++.|+..--..+..+++|++|+|+++. |+..- ..++.+ ++|++|+|++|. +|.---..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57777777777665444456677777777777764 54321 133332 356666666653 554333345556666
Q ss_pred cEEEcccCC
Q 004020 139 QTISLDYNS 147 (779)
Q Consensus 139 ~~L~Ls~N~ 147 (779)
++|+|+++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666554
No 431
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.23 E-value=6.5e-05 Score=70.05 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=39.1
Q ss_pred CCccccCCCCCcEEEcccCccccCC-CCCCCCCCccEEecCCCC-CCCCCcccccCC----CCccEEEcccCC
Q 004020 81 LPKELNSLSSLTVLEVMKNKLTGQI-PSLSGLSSLQEVLFDDNN-FTSVPSDFFKGL----TSLQTISLDYNS 147 (779)
Q Consensus 81 ~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~ 147 (779)
+|.....-.+|++|||+++.++..- ..+.++++|+.|+|++|. ++.---..+..+ ++|++|+|+++.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 3433323346888888888765432 256677777777777774 554332334443 356677776654
No 432
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.20 E-value=0.00048 Score=61.15 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=27.6
Q ss_pred CccEEecCCCCCCCCCcccccCCCCccEEEcccCCCC
Q 004020 113 SLQEVLFDDNNFTSVPSDFFKGLTSLQTISLDYNSFD 149 (779)
Q Consensus 113 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 149 (779)
+|++|+|++|+|+.++++.|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4677777777777777777777777788888877764
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.16 E-value=0.00092 Score=69.07 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=45.4
Q ss_pred CcccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCcc-ceEeeEEEeCCeEEEEEEec
Q 004020 592 FSEENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHL-VGLLGYCLDGNERLLVYEYM 670 (779)
Q Consensus 592 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~ 670 (779)
+.-.+.|+.|....+|++ ..+++|+..... ....+..+|..+++.+....+ .+++.+ +.+.-++++||+
T Consensus 20 ~~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~---~~~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i 89 (301)
T 3dxq_A 20 YTGPLERLGGLTNLVFRA-----GDLCLRIPGKGT---EEYINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYI 89 (301)
T ss_dssp CCSCEEEESCSSEEEEEE-----TTEEEEEECC-------CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECC
T ss_pred ccceeEcCCcccccccee-----eeEEEECCCCCc---cceeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeec
Confidence 333678999999999998 568888775431 111123467777776642222 455543 344457899999
Q ss_pred -CCCCh
Q 004020 671 -PQGTL 675 (779)
Q Consensus 671 -~~gsL 675 (779)
++.++
T Consensus 90 ~~g~~l 95 (301)
T 3dxq_A 90 AGAQTM 95 (301)
T ss_dssp TTCEEC
T ss_pred CCCccC
Confidence 66544
No 434
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.12 E-value=0.0041 Score=64.97 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=81.7
Q ss_pred ceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCC--ccceEeeE-----EEeCCeEEEEEE
Q 004020 596 NVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHR--HLVGLLGY-----CLDGNERLLVYE 668 (779)
Q Consensus 596 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~~~~~-----~~~~~~~~lv~e 668 (779)
+.++ |....||++...+|+.+++|....... ....+..|..++..+... .+++++.. ....+..+++||
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~---~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~ 107 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPERW---TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFP 107 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTTS---CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEE
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCCC---CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEE
Confidence 4566 788899998777777899999864322 224566677777776421 23444432 223456788999
Q ss_pred ecCCCChhh-----H---------hhhcccC----CCCCCCHHHH----------------------HHHHHHHHHHHHH
Q 004020 669 YMPQGTLSR-----H---------LFNRKEE----GLKPLEWTRR----------------------LTIALDVARGVEY 708 (779)
Q Consensus 669 ~~~~gsL~~-----~---------l~~~~~~----~~~~~~~~~~----------------------~~i~~qi~~~L~~ 708 (779)
|++|..+.. . ++..... .....++... ...+.+++..++-
T Consensus 108 ~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (328)
T 1zyl_A 108 SVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTA 187 (328)
T ss_dssp CCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 998854321 0 1111100 0011222111 0111122222222
Q ss_pred HHc-CCCCCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 709 LHG-LAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 709 LH~-~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
.-. .....++|+|+++.||+++ + .+.|+||+.+..-
T Consensus 188 ~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g 224 (328)
T 1zyl_A 188 HWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARNG 224 (328)
T ss_dssp HCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCEE
T ss_pred HhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCcC
Confidence 211 1235689999999999998 4 8999999887653
No 435
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.04 E-value=0.001 Score=72.41 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=49.0
Q ss_pred cceecccccEEEEEEEEcC--------CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCc-cceEeeEEEeCCeEEE
Q 004020 595 ENVLGRGGFGTVYKGELHD--------GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRH-LVGLLGYCLDGNERLL 665 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~l 665 (779)
.+.|+.|-...+|++...+ ++.+++|+..... . ...+.+|..+++.+...+ .+++++.+. + .+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~-~---~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~ 149 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE-T---ESHLVAESVIFTLLSERHLGPKLYGIFS--G--GR 149 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC-C---HHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC-c---HHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CE
Confidence 4678888889999998753 5789999874321 1 134457888888875333 356666543 2 38
Q ss_pred EEEecCCCCh
Q 004020 666 VYEYMPQGTL 675 (779)
Q Consensus 666 v~e~~~~gsL 675 (779)
|+||++|.++
T Consensus 150 v~e~l~G~~l 159 (429)
T 1nw1_A 150 LEEYIPSRPL 159 (429)
T ss_dssp EECCCCEEEC
T ss_pred EEEEeCCccc
Confidence 9999986444
No 436
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.96 E-value=0.0039 Score=68.13 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=47.5
Q ss_pred cceecccccEEEEEEEEcC-CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCcc-ceEeeEEEeCCeEEEEEEecCC
Q 004020 595 ENVLGRGGFGTVYKGELHD-GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHL-VGLLGYCLDGNERLLVYEYMPQ 672 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~ 672 (779)
.+.|+.|-...+|++...+ +..+++|+..... . ...+..+|..+++.+...++ .++++.+. + .+||||++|
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~--~-~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G 185 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKT--D-EIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDG 185 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-C--C-SCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCS
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCCh--h-hhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCC
Confidence 4678888889999998765 5788899874321 1 11112578888888864444 56676652 2 359999987
Q ss_pred CCh
Q 004020 673 GTL 675 (779)
Q Consensus 673 gsL 675 (779)
.++
T Consensus 186 ~~l 188 (458)
T 2qg7_A 186 YAL 188 (458)
T ss_dssp EEC
T ss_pred ccC
Confidence 544
No 437
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.95 E-value=0.0035 Score=65.63 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=74.0
Q ss_pred ceecccccEE-EEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-C-CccceEeeEEEeCCeEEEEEEecCC
Q 004020 596 NVLGRGGFGT-VYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-H-RHLVGLLGYCLDGNERLLVYEYMPQ 672 (779)
Q Consensus 596 ~~lg~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h-~niv~~~~~~~~~~~~~lv~e~~~~ 672 (779)
+.|+.|.... +|+....++..+++|...... ..++..|+.+++.+. + -.+.+++.+....+ +++||++.+
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~-----~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~ 96 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE-----GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGD 96 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT-----TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCS
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC-----CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCC
Confidence 4566565554 667765446778787654321 023445666666664 2 23556666533333 789999977
Q ss_pred CChhhHhhhccc---------------------CCCCCCCHHHHH-------H-------------HHHHHHHHHHHHH-
Q 004020 673 GTLSRHLFNRKE---------------------EGLKPLEWTRRL-------T-------------IALDVARGVEYLH- 710 (779)
Q Consensus 673 gsL~~~l~~~~~---------------------~~~~~~~~~~~~-------~-------------i~~qi~~~L~~LH- 710 (779)
..+.+.+..... .....++..... . ....+...++.+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~ 176 (333)
T 3csv_A 97 ALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILS 176 (333)
T ss_dssp CBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 666544322110 001112211100 0 0001112222221
Q ss_pred --cCCCCCcEEcCCCCCCEEEcCC----CcEEEEeeccceecC
Q 004020 711 --GLAHQSFIHRDLKPSNILLGDD----MRAKVADFGLVRLAP 747 (779)
Q Consensus 711 --~~~~~~ivHrDlkp~NIll~~~----~~~kl~DFG~a~~~~ 747 (779)
......++|+|+.+.||+++.+ +.+.|+||+.+..-.
T Consensus 177 ~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~ 219 (333)
T 3csv_A 177 AQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGH 219 (333)
T ss_dssp HHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEEC
T ss_pred hcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCC
Confidence 1124679999999999999874 689999999887643
No 438
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.91 E-value=0.0026 Score=67.59 Aligned_cols=144 Identities=14% Similarity=0.169 Sum_probs=82.8
Q ss_pred cceecccccEEEEEEEEc--------CCcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEEeCCeEEE
Q 004020 595 ENVLGRGGFGTVYKGELH--------DGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~l 665 (779)
.+.+..|-...+|++... +++.+++|+..... .......+|.++++.+. +.-..++++++.+ .+
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~---~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~ 127 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL---QGVDSLVLESVMFAILAERSLGPQLYGVFPE----GR 127 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EE
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc---chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----cc
Confidence 356777888889999764 24789999863321 23345668999988885 3333566665543 29
Q ss_pred EEEecCCCChhhH-----------------hhhcccCCCCCCC--HHHHHHHHHHHHH-------------------HHH
Q 004020 666 VYEYMPQGTLSRH-----------------LFNRKEEGLKPLE--WTRRLTIALDVAR-------------------GVE 707 (779)
Q Consensus 666 v~e~~~~gsL~~~-----------------l~~~~~~~~~~~~--~~~~~~i~~qi~~-------------------~L~ 707 (779)
||||++|..+... ++.......+... +.++.++..++.. .++
T Consensus 128 v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (379)
T 3feg_A 128 LEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMG 207 (379)
T ss_dssp EEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHH
T ss_pred EEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHH
Confidence 9999998655321 1111111011122 3444445443321 223
Q ss_pred HHH----c-CCCCCcEEcCCCCCCEEEcCC----CcEEEEeecccee
Q 004020 708 YLH----G-LAHQSFIHRDLKPSNILLGDD----MRAKVADFGLVRL 745 (779)
Q Consensus 708 ~LH----~-~~~~~ivHrDlkp~NIll~~~----~~~kl~DFG~a~~ 745 (779)
.|. . .....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 208 ~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 208 NLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 332 1 123468999999999999876 7899999998864
No 439
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.73 E-value=0.0024 Score=56.60 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=47.6
Q ss_pred cEEEeecCccc--CCCCCCCCCCCCcEEEccCCccccccChhhhCCCCCCEEEccCccccc
Q 004020 240 TQLWLHGNSFT--GPLPDLSGLSSLQDFSVRDNQLTGIVPSSLVNLHSLAVVNLTNNLFQG 298 (779)
Q Consensus 240 ~~L~L~~N~l~--~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 298 (779)
..++.+++.|+ ..+..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47899999998 5554443 579999999999997777888999999999999999864
No 440
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.64 E-value=0.0028 Score=67.51 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=44.1
Q ss_pred cceecccccEEEEEEEEcC---------CcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCc-cceEeeEEEeCCeEE
Q 004020 595 ENVLGRGGFGTVYKGELHD---------GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRH-LVGLLGYCLDGNERL 664 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~ 664 (779)
.+.++.|....+|++...+ ++.+++|+..... ....+...|.++++.+...+ ..++++.. . -+
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~---~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~ 110 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV---DELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GG 110 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG---GGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TE
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc---cceecHHHHHHHHHHHHhcCCCCceEEec--C--Cc
Confidence 4567788888999998654 2688888865422 11112356788887775223 44666543 2 26
Q ss_pred EEEEecCCCCh
Q 004020 665 LVYEYMPQGTL 675 (779)
Q Consensus 665 lv~e~~~~gsL 675 (779)
+||||++|..+
T Consensus 111 ~v~e~i~G~~l 121 (369)
T 3c5i_A 111 RIEEWLYGDPL 121 (369)
T ss_dssp EEEECCCSEEC
T ss_pred EEEEEecCCcC
Confidence 89999987543
No 441
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.44 E-value=0.015 Score=60.95 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=28.4
Q ss_pred CCcEEcCCCCCCEEEcCCCcEEEEeeccceec
Q 004020 715 QSFIHRDLKPSNILLGDDMRAKVADFGLVRLA 746 (779)
Q Consensus 715 ~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 746 (779)
..++|+|+.+.||++++++.+.|+||+.+...
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 56899999999999998888999999887654
No 442
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.43 E-value=0.0005 Score=65.32 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=73.8
Q ss_pred ccCCCCCceEeccCc-eeEee----cCCCccCCCCCcccEEEccCCCCCCcCCCccccCCcceeeccCCCCCCCCCCchh
Q 004020 157 LKDATGLQRFSANGA-NITGT----IPDFLGGDTIPGLMHLHLAFNFLQGPIPLSFGKSSIQTLWLNGQKGDSKLNGSVA 231 (779)
Q Consensus 157 ~~~l~~L~~L~l~~n-~l~~~----~p~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~l~l~~n~~~~~~~~~~~ 231 (779)
+.+-+.|+.|+|++| +|... +.+.+. .-..|++|+|++|+|...--..++ .
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~--~N~~L~~L~L~~n~igd~ga~alA----------------------~ 92 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLI----------------------E 92 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHH----------------------H
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHh--hCCCcCEEEccCCCCChHHHHHHH----------------------H
Confidence 344567777777775 55311 222232 345677777777777643333332 3
Q ss_pred hhcCCCCccEEEeecCcccCCC-----CCCCCCCCCcEEEccCC---cccc----ccChhhhCCCCCCEEEccCcccc
Q 004020 232 VIQNMTSLTQLWLHGNSFTGPL-----PDLSGLSSLQDFSVRDN---QLTG----IVPSSLVNLHSLAVVNLTNNLFQ 297 (779)
Q Consensus 232 ~~~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~l~~N---~l~~----~~p~~l~~l~~L~~L~Ls~N~l~ 297 (779)
.+..-+.|+.|+|++|.|...- ..+..-+.|++|+|++| .+.. .+...+..-+.|..|+++.|.+.
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3445578999999999997521 13566677999999865 3432 24456667789999999888754
No 443
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.39 E-value=0.0006 Score=64.78 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=9.2
Q ss_pred CCcccEEEccCCCCC
Q 004020 186 IPGLMHLHLAFNFLQ 200 (779)
Q Consensus 186 l~~L~~L~L~~N~l~ 200 (779)
-+.|+.|+|+.|.+.
T Consensus 156 N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 156 NESLLRVGISFASME 170 (197)
T ss_dssp CSSCCEEECCCCCHH
T ss_pred CCCcCeEeccCCCcc
Confidence 346677777666543
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.98 E-value=0.018 Score=61.36 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=83.1
Q ss_pred cceecccccEEEEEEEEcC--------CcEEEEEEeccccc------------Chh----HHHHHHHHHHHHHcCC-CCc
Q 004020 595 ENVLGRGGFGTVYKGELHD--------GTKIAVKRMESAVV------------SEK----GFAEFKSEIAVLTKVR-HRH 649 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~------------~~~----~~~~~~~E~~~l~~l~-h~n 649 (779)
.+.|..|-...+|++...+ ++.|.+++.-.... +.. ..+....|..+++.+. +.-
T Consensus 57 v~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi 136 (401)
T 3f2s_A 57 ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSL 136 (401)
T ss_dssp EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCC
Confidence 3566668888999997753 36788887643210 000 0112335888888875 444
Q ss_pred cceEeeEEEeCCeEEEEEEecCCCChhhH-----------------hhhcccCCCCCCC--HHHHHHHHHHHH-------
Q 004020 650 LVGLLGYCLDGNERLLVYEYMPQGTLSRH-----------------LFNRKEEGLKPLE--WTRRLTIALDVA------- 703 (779)
Q Consensus 650 iv~~~~~~~~~~~~~lv~e~~~~gsL~~~-----------------l~~~~~~~~~~~~--~~~~~~i~~qi~------- 703 (779)
..++++++.. .+|+||+++.+|... ++.......+... +..+.++..++.
T Consensus 137 ~Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~ 212 (401)
T 3f2s_A 137 GPKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEE 212 (401)
T ss_dssp SCCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSH
T ss_pred CCeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcch
Confidence 5677776542 289999997554221 1111111111122 223333433221
Q ss_pred ---------------HHH----HHHHcC-CCCCcEEcCCCCCCEEEcCC------CcEEEEeecccee
Q 004020 704 ---------------RGV----EYLHGL-AHQSFIHRDLKPSNILLGDD------MRAKVADFGLVRL 745 (779)
Q Consensus 704 ---------------~~L----~~LH~~-~~~~ivHrDlkp~NIll~~~------~~~kl~DFG~a~~ 745 (779)
.-+ +++... ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 213 ~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 213 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 112 223221 23468999999999999876 7899999998764
No 445
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.93 E-value=0.056 Score=58.15 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=47.8
Q ss_pred cceecccccEEEEEEEEcC--------CcEEEEEEecccccChhHHHHHHHHHHHHHcCC-CCccceEeeEEEeCCeEEE
Q 004020 595 ENVLGRGGFGTVYKGELHD--------GTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVR-HRHLVGLLGYCLDGNERLL 665 (779)
Q Consensus 595 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~l 665 (779)
.+.+..|-...+|++...+ ++.+++|+..... ....+..+|..+++.+. +.-..++++.+ . -++
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t---~~~idR~~E~~~l~~L~~~gi~P~l~~~~--~--~~~ 147 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV---GKFYDSKVELDVFRYLSNINIAPNIIADF--P--EGR 147 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC----CCCCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc---chhcCHHHHHHHHHHHHhcCCCCCEEEEc--C--CCE
Confidence 4667778889999998753 5789999864322 11112356888887774 33345555433 2 278
Q ss_pred EEEecCCCCh
Q 004020 666 VYEYMPQGTL 675 (779)
Q Consensus 666 v~e~~~~gsL 675 (779)
||||++|..+
T Consensus 148 I~efI~G~~l 157 (424)
T 3mes_A 148 IEEFIDGEPL 157 (424)
T ss_dssp EEECCCSEEC
T ss_pred EEEEeCCccC
Confidence 9999998654
No 446
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=92.78 E-value=0.24 Score=52.99 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=25.3
Q ss_pred CcEEcCCCCCCEEE------cCCCcEEEEeecccee
Q 004020 716 SFIHRDLKPSNILL------GDDMRAKVADFGLVRL 745 (779)
Q Consensus 716 ~ivHrDlkp~NIll------~~~~~~kl~DFG~a~~ 745 (779)
.++|+|+.+.||++ +++..++++||..|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4567799999998865
No 447
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.01 E-value=0.055 Score=36.85 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=11.0
Q ss_pred cEEEehhHHHHHHHHHHHheeeEEeec
Q 004020 492 KIVGSVVGVVCGAFIVGLGFCLYTRKR 518 (779)
Q Consensus 492 ~i~g~v~g~~~~~~~~~~~~~~~~~~r 518 (779)
.+++.++|.++++++++++++++.|+|
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 344444443333334444444443333
No 448
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=87.61 E-value=0.049 Score=36.99 Aligned_cols=29 Identities=38% Similarity=0.611 Sum_probs=12.5
Q ss_pred cccEEEehhHHHHHHHHHHHheeeEEeec
Q 004020 490 TGKIVGSVVGVVCGAFIVGLGFCLYTRKR 518 (779)
Q Consensus 490 ~~~i~g~v~g~~~~~~~~~~~~~~~~~~r 518 (779)
+..+++.++|.++++++++++++++.|+|
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 34444444443434444444444444433
No 449
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=86.27 E-value=0.064 Score=35.35 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=16.1
Q ss_pred CCcccEEEehhHHHHHHHHHHHhee
Q 004020 488 SNTGKIVGSVVGVVCGAFIVGLGFC 512 (779)
Q Consensus 488 ~~~~~i~g~v~g~~~~~~~~~~~~~ 512 (779)
.+.+.++|+++|.++++++++...+
T Consensus 8 ls~GaIAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 8 LTGGEIVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceeeeehHHHHHHHHHHHHHH
Confidence 3456778888888776665544433
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=83.04 E-value=0.14 Score=55.93 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=18.2
Q ss_pred ccceecccccEEEEEEEEcC-CcEEEE------EEecccccChhHHHHHHHHHHHHHcCCCCccceEeeEEEe
Q 004020 594 EENVLGRGGFGTVYKGELHD-GTKIAV------KRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGYCLD 659 (779)
Q Consensus 594 ~~~~lg~G~~g~Vy~~~~~~-~~~vav------K~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 659 (779)
+.+.+| ||.||++.+.. ..+||+ |..+....+.+....+.+|..+++.++|||+++.+++...
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 446666 99999998753 367888 7766544445555678899999999999999999887653
No 451
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=81.51 E-value=2.6 Score=40.17 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=61.2
Q ss_pred CCCccceEeeEEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHH-HHHcCCCCCcEEcCCCC
Q 004020 646 RHRHLVGLLGYCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVE-YLHGLAHQSFIHRDLKP 724 (779)
Q Consensus 646 ~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~-~LH~~~~~~ivHrDlkp 724 (779)
.||++ -..+-.+.+...+.++.-+++.=...+ +..+...+++++.+|+.... +++ .-+|--+.|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i--------~~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P 112 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI--------RKTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCP 112 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH--------HTSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH--------HhcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeC
Confidence 57887 444556677766666654333222222 14678889999999887766 554 367889999
Q ss_pred CCEEEcCCCcEEEEeeccceecC
Q 004020 725 SNILLGDDMRAKVADFGLVRLAP 747 (779)
Q Consensus 725 ~NIll~~~~~~kl~DFG~a~~~~ 747 (779)
+||++|.++.+++.-.|+-..++
T Consensus 113 ~NL~f~~~~~p~i~hRGi~~~lp 135 (219)
T 4ano_A 113 ENLMFNRALEPFFLHVGVKESLP 135 (219)
T ss_dssp GGEEECTTCCEEESCCEETTTBS
T ss_pred ceEEEeCCCcEEEEEcCCcccCC
Confidence 99999999999999999754443
No 452
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=80.59 E-value=0.1 Score=35.34 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=15.2
Q ss_pred ccEEEehhHHHHHHHHHHHheeeEEeeccc
Q 004020 491 GKIVGSVVGVVCGAFIVGLGFCLYTRKRKR 520 (779)
Q Consensus 491 ~~i~g~v~g~~~~~~~~~~~~~~~~~~r~~ 520 (779)
..+++.++| ++.++++++++++|.|||+.
T Consensus 12 ~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 12 TSIISAVVG-ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred cchHHHHHH-HHHHHHHHHHHHhheehhhh
Confidence 345666677 33444555555555554443
No 453
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=79.84 E-value=2.2 Score=40.62 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=62.8
Q ss_pred CCCccceEeeEEEeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCC
Q 004020 646 RHRHLVGLLGYCLDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPS 725 (779)
Q Consensus 646 ~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~ 725 (779)
.||+++.. .+-.+.+.+.+.++.-+ ....+-. .+..+...+++++.+|+...+++++ =+|--+.|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~--~~~~f~~------ik~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~ 108 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDIND--NHTPFDN------IKSFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPD 108 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCT--TSEEGGG------GGGSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGG
T ss_pred cCCcccce-EEEEcccEEEEEEEcCc--ccCCHHH------HHhcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecc
Confidence 58888865 45566666555555433 2222211 1246788999999999988866663 478899999
Q ss_pred CEEEcCCCcEEEEeeccceecCC
Q 004020 726 NILLGDDMRAKVADFGLVRLAPD 748 (779)
Q Consensus 726 NIll~~~~~~kl~DFG~a~~~~~ 748 (779)
||+++.++.+++.-.|+-..+++
T Consensus 109 NL~f~~~~~p~i~~RGik~~l~P 131 (215)
T 4ann_A 109 ELFFTRDGLPIAKTRGLQNVVDP 131 (215)
T ss_dssp GEEECTTSCEEESCCEETTTBSC
T ss_pred eEEEcCCCCEEEEEccCccCCCC
Confidence 99999999999999997544433
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.39 E-value=11 Score=31.01 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=18.0
Q ss_pred CCCCCCCccEEecCCCCCCCCCcccccCCCCccEEEcc
Q 004020 107 SLSGLSSLQEVLFDDNNFTSVPSDFFKGLTSLQTISLD 144 (779)
Q Consensus 107 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 144 (779)
+|.++++|+.+.|-.+ ++.|...+|.++.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 4455555555555432 444444445555555555444
No 455
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=49.33 E-value=1.9e+02 Score=31.95 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=50.5
Q ss_pred ceEeeEEEeCCeEEEEEEecCCCChhhHhh----------hcccCCCCC--CCHHHHHHHHHHHH--HHHHHHHcCCCCC
Q 004020 651 VGLLGYCLDGNERLLVYEYMPQGTLSRHLF----------NRKEEGLKP--LEWTRRLTIALDVA--RGVEYLHGLAHQS 716 (779)
Q Consensus 651 v~~~~~~~~~~~~~lv~e~~~~gsL~~~l~----------~~~~~~~~~--~~~~~~~~i~~qi~--~~L~~LH~~~~~~ 716 (779)
+..|.+.......- +.|++++.++.+.+. +........ ..+..+..+++.+| ..+.|+=.
T Consensus 402 i~~Y~Vipls~~~G-lIE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILG----- 475 (614)
T 3ls8_A 402 LTPYKVLATSTKHG-FMQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILG----- 475 (614)
T ss_dssp CCCCCEEESSSSEE-EEECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred eeccEEEEecCCCc-eEEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheeee-----
Confidence 34445554444433 357777655555442 222111111 22445555655544 34566653
Q ss_pred cEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 717 FIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 717 ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
| +|=.++||||+.+|++.=+|||.+.
T Consensus 476 i--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 476 V--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp C--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred c--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 3 5888999999999999999999863
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.59 E-value=21 Score=29.22 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=38.3
Q ss_pred CCCCCCCCcccccCCCCccEEEcccCCCCCCCCcccccCCCCCceEeccCc
Q 004020 121 DNNFTSVPSDFFKGLTSLQTISLDYNSFDSWVIPESLKDATGLQRFSANGA 171 (779)
Q Consensus 121 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~l~~n 171 (779)
+..++.|...+|.++.+|+.+.+..+- +. +-...|.++.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~v-~~-Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPNI-GL-LYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTTS-SC-CCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCch-he-EcHHHHhccCCccEEEEcCC
Confidence 456788999999999999999998763 22 34577888888888887654
No 457
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=36.29 E-value=1.6 Score=27.83 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=10.8
Q ss_pred EehhHHHHHHHHHHHheeeEEeec
Q 004020 495 GSVVGVVCGAFIVGLGFCLYTRKR 518 (779)
Q Consensus 495 g~v~g~~~~~~~~~~~~~~~~~~r 518 (779)
+.++| ++.++++++++.+|.|||
T Consensus 12 agVvg-lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 12 ATVVG-VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHH-HHHHHHHTTTTTHHHHHC
T ss_pred HHHHH-HHHHHHHHHHhheEEeec
Confidence 33444 444444555555554444
No 458
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=31.91 E-value=6.5 Score=28.85 Aligned_cols=8 Identities=50% Similarity=0.717 Sum_probs=3.3
Q ss_pred ehhHHHHH
Q 004020 496 SVVGVVCG 503 (779)
Q Consensus 496 ~v~g~~~~ 503 (779)
+++|.+++
T Consensus 12 ivlGg~~~ 19 (70)
T 2klu_A 12 IVLGGVAG 19 (70)
T ss_dssp HHHHHHHH
T ss_pred HHHhHHHH
Confidence 34444433
No 459
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=25.49 E-value=5.6 Score=25.12 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=14.9
Q ss_pred cccEEEehhHHHHHHHHHHHheeeE
Q 004020 490 TGKIVGSVVGVVCGAFIVGLGFCLY 514 (779)
Q Consensus 490 ~~~i~g~v~g~~~~~~~~~~~~~~~ 514 (779)
.+.++|+++|-+++.+++++.++++
T Consensus 6 ~gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeEeHHHHHHHHHHHHHHhhe
Confidence 3456677777666666555555443
No 460
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=25.22 E-value=1.8e+02 Score=29.53 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=68.6
Q ss_pred ccceecccccEEEEEEEEcCCcEEEEEEecccccChhHHHHHHHHHHHHHcCCCCccceEeeE--------------E--
Q 004020 594 EENVLGRGGFGTVYKGELHDGTKIAVKRMESAVVSEKGFAEFKSEIAVLTKVRHRHLVGLLGY--------------C-- 657 (779)
Q Consensus 594 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~--------------~-- 657 (779)
..+..-.|.. .||.+.. ++..|+||-.. ....+.+-.++...-.+.-|+..-+.-. .
T Consensus 73 ~I~~s~~Gst-gvff~~t-d~~~~VVK~s~-----~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 73 GIERSEKGTE-GLFFVET-ESGVFIVKRST-----NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEECCSTTS-CEEEEEE-SSCEEEEECCT-----THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred EEEeccCCCC-CeEEEEe-CCCEEEEeCcH-----HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 3444555654 5555555 57889999542 1122334444444444454542211100 0
Q ss_pred ------EeCCeEEEEEEecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHH--HHHHHHHHcCC-CCCcE-EcCCCCCCE
Q 004020 658 ------LDGNERLLVYEYMPQGTLSRHLFNRKEEGLKPLEWTRRLTIALDV--ARGVEYLHGLA-HQSFI-HRDLKPSNI 727 (779)
Q Consensus 658 ------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~i~~qi--~~~L~~LH~~~-~~~iv-HrDlkp~NI 727 (779)
......+++|||.+|..|.+.-..... ..+... .+.++ +-++.++..-. +.+.+ +.--.|.||
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~---~~f~~~----~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NI 218 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSAP---EVLTKS----TMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNI 218 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSHH---HHSCHH----HHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhhh---hhcCHH----HHHhhchhheehhhhcCCccCcccccCCCChhhe
Confidence 011245699999987665433211000 012222 22332 22344444322 22222 123578999
Q ss_pred EEcCCC-cEEEEeeccceecC
Q 004020 728 LLGDDM-RAKVADFGLVRLAP 747 (779)
Q Consensus 728 ll~~~~-~~kl~DFG~a~~~~ 747 (779)
|+++++ .+.++|-+.+....
T Consensus 219 L~~~~n~~~~~IDhn~af~~~ 239 (342)
T 1cja_A 219 MLSERGATVVPIDSKIIPLDA 239 (342)
T ss_dssp EEESBTTCEEECSCCCCCCCS
T ss_pred EEeCCCCeEEEEcCCccccCC
Confidence 997654 49999999986543
No 461
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=23.82 E-value=36 Score=38.41 Aligned_cols=44 Identities=27% Similarity=0.269 Sum_probs=32.1
Q ss_pred HHHHHHHHHH--HHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEeeccce
Q 004020 694 RRLTIALDVA--RGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVR 744 (779)
Q Consensus 694 ~~~~i~~qi~--~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 744 (779)
.+..++..+| ..+.|+=. | +|=.++||||+.+|++.-+|||.+.
T Consensus 530 ar~nF~~SlA~~Svv~YILG-----l--GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 530 VMDTYIKSCAGYCVITYLLG-----V--GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----C--CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHcc-----C--CCCCCcceEEeCCCCEEEEeehhhh
Confidence 4455555544 34556542 2 6889999999999999999999863
No 462
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=20.82 E-value=1.4e+02 Score=28.41 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=43.5
Q ss_pred ChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcEEcCCCCCCEEEcCCCcEEEEe
Q 004020 674 TLSRHLFNRKEEGLKPLEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVAD 739 (779)
Q Consensus 674 sL~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~ivHrDlkp~NIll~~~~~~kl~D 739 (779)
+|.+++..+.. ++++.++|.++.|.+.+|.-+-.. +.-..+=+-|..|++..+|.|...+
T Consensus 34 SL~eIL~~~~~----PlsEEqaWALc~Qc~~~L~~~~~~--~~~~~~i~~~~~i~l~~dG~V~f~~ 93 (229)
T 2yle_A 34 SLEEILRLYNQ----PINEEQAWAVCYQCCGSLRAAARR--RQPRHRVRSAAQIRVWRDGAVTLAP 93 (229)
T ss_dssp EHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHT--TCCCCCCCSGGGEEEETTSCEEECC
T ss_pred cHHHHHHHcCC----CcCHHHHHHHHHHHHHHHHhhhhc--ccCCceecCCcceEEecCCceeccc
Confidence 78888876653 799999999999999998776210 1111233446889999999887664
Done!