Query 004021
Match_columns 779
No_of_seqs 574 out of 4181
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 16:09:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-85 2.8E-90 754.3 46.8 740 10-770 5-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-55 2.9E-60 535.6 40.8 556 155-754 184-837 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-41 5.4E-46 353.1 19.5 268 160-429 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.7 3.9E-18 8.5E-23 178.4 -2.6 240 491-737 99-380 (1255)
5 PLN00113 leucine-rich repeat r 99.6 5E-16 1.1E-20 190.0 13.0 242 493-750 116-388 (968)
6 PLN03210 Resistant to P. syrin 99.6 1.6E-15 3.4E-20 185.7 16.8 266 485-755 601-906 (1153)
7 PLN00113 leucine-rich repeat r 99.6 2.2E-15 4.8E-20 184.3 12.7 242 493-752 138-414 (968)
8 KOG0444 Cytoskeletal regulator 99.6 8.6E-17 1.9E-21 168.5 -1.2 215 492-726 123-393 (1255)
9 KOG0472 Leucine-rich repeat pr 99.5 1.1E-15 2.4E-20 152.8 -0.5 106 490-599 201-312 (565)
10 KOG0617 Ras suppressor protein 99.5 2.1E-16 4.5E-21 139.8 -5.4 155 517-715 38-192 (264)
11 KOG0472 Leucine-rich repeat pr 99.5 3.5E-16 7.5E-21 156.3 -5.9 228 493-752 66-307 (565)
12 KOG4194 Membrane glycoprotein 99.5 2E-14 4.3E-19 150.2 3.2 240 495-750 173-447 (873)
13 KOG4194 Membrane glycoprotein 99.4 3.8E-14 8.2E-19 148.1 3.5 197 484-713 113-334 (873)
14 KOG0617 Ras suppressor protein 99.4 6.1E-15 1.3E-19 130.6 -6.3 172 527-744 25-197 (264)
15 PRK15387 E3 ubiquitin-protein 99.4 4.7E-12 1E-16 144.2 13.3 189 462-666 190-393 (788)
16 PRK15370 E3 ubiquitin-protein 99.3 9.2E-12 2E-16 142.8 10.7 218 483-752 188-425 (754)
17 KOG0618 Serine/threonine phosp 99.3 7E-13 1.5E-17 146.3 -0.5 218 495-731 219-488 (1081)
18 PRK15370 E3 ubiquitin-protein 99.2 4.1E-11 9E-16 137.5 9.9 206 496-751 179-397 (754)
19 KOG4237 Extracellular matrix p 99.2 2.4E-12 5.2E-17 129.1 -0.6 96 502-598 53-154 (498)
20 PRK04841 transcriptional regul 99.2 1.1E-09 2.3E-14 133.7 22.1 275 155-467 14-332 (903)
21 KOG0532 Leucine-rich repeat (L 99.1 2.2E-12 4.8E-17 135.1 -3.2 186 496-729 76-270 (722)
22 PRK15387 E3 ubiquitin-protein 99.1 1.4E-10 3E-15 132.4 10.5 192 495-731 242-457 (788)
23 KOG0618 Serine/threonine phosp 99.1 9.9E-12 2.1E-16 137.4 -1.2 96 496-594 46-147 (1081)
24 TIGR00635 ruvB Holliday juncti 99.0 9.7E-09 2.1E-13 108.0 17.8 270 155-449 4-290 (305)
25 PRK00080 ruvB Holliday junctio 99.0 4.7E-09 1E-13 111.1 15.0 270 155-448 25-310 (328)
26 KOG0532 Leucine-rich repeat (L 99.0 6.4E-11 1.4E-15 124.3 -1.3 187 517-752 80-270 (722)
27 PRK00411 cdc6 cell division co 98.9 4.5E-07 9.8E-12 99.2 25.1 279 154-448 29-358 (394)
28 KOG4237 Extracellular matrix p 98.9 4.7E-10 1E-14 112.9 0.3 101 496-598 68-178 (498)
29 KOG4658 Apoptotic ATPase [Sign 98.8 1.7E-09 3.7E-14 126.3 4.4 137 532-670 567-732 (889)
30 TIGR03015 pepcterm_ATPase puta 98.8 5.5E-07 1.2E-11 92.9 20.8 165 177-349 42-242 (269)
31 PF14580 LRR_9: Leucine-rich r 98.8 1.7E-09 3.7E-14 101.2 1.3 63 534-598 40-102 (175)
32 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.2E-13 96.0 4.0 107 489-598 13-127 (175)
33 PF01637 Arch_ATPase: Archaeal 98.7 2E-07 4.2E-12 94.0 13.8 181 157-344 1-233 (234)
34 TIGR02928 orc1/cdc6 family rep 98.7 7.4E-06 1.6E-10 88.6 26.2 278 155-448 15-350 (365)
35 KOG1259 Nischarin, modulator o 98.6 7.3E-09 1.6E-13 100.5 0.7 123 517-667 289-411 (490)
36 COG2909 MalT ATP-dependent tra 98.6 2E-06 4.4E-11 96.0 19.1 278 156-469 20-340 (894)
37 cd00116 LRR_RI Leucine-rich re 98.6 1.8E-08 4E-13 106.9 3.0 13 653-665 219-231 (319)
38 COG4886 Leucine-rich repeat (L 98.6 3.8E-08 8.3E-13 107.7 4.9 79 517-598 121-200 (394)
39 KOG1259 Nischarin, modulator o 98.6 6.8E-09 1.5E-13 100.8 -1.4 127 491-635 280-412 (490)
40 cd00116 LRR_RI Leucine-rich re 98.5 2.6E-08 5.7E-13 105.7 1.2 205 495-730 23-261 (319)
41 PF13855 LRR_8: Leucine rich r 98.5 1.3E-07 2.9E-12 72.5 3.7 60 536-596 1-61 (61)
42 KOG3207 Beta-tubulin folding c 98.5 6.9E-08 1.5E-12 99.0 2.7 200 493-728 119-335 (505)
43 PRK06893 DNA replication initi 98.4 7.4E-06 1.6E-10 81.7 15.9 138 177-345 38-203 (229)
44 PF05729 NACHT: NACHT domain 98.4 4.1E-06 9E-11 79.3 12.8 125 179-313 1-163 (166)
45 COG4886 Leucine-rich repeat (L 98.4 3.6E-07 7.8E-12 100.1 5.2 185 517-738 98-296 (394)
46 KOG3207 Beta-tubulin folding c 98.3 8.5E-08 1.8E-12 98.3 -0.5 179 491-704 142-335 (505)
47 TIGR03420 DnaA_homol_Hda DnaA 98.3 2E-05 4.4E-10 78.9 16.3 154 160-346 22-202 (226)
48 KOG1859 Leucine-rich repeat pr 98.3 5.6E-08 1.2E-12 105.3 -2.4 150 490-667 104-291 (1096)
49 COG2256 MGS1 ATPase related to 98.3 7.6E-05 1.6E-09 76.8 19.7 143 177-341 47-208 (436)
50 PRK13342 recombination factor 98.3 7.1E-05 1.5E-09 81.8 20.8 168 155-346 12-197 (413)
51 TIGR02903 spore_lon_C ATP-depe 98.2 0.00011 2.4E-09 83.8 22.2 187 155-348 154-398 (615)
52 COG3903 Predicted ATPase [Gene 98.2 2.8E-06 6.2E-11 87.7 8.1 275 177-469 13-316 (414)
53 PTZ00112 origin recognition co 98.2 0.00022 4.8E-09 80.9 23.3 194 154-349 754-986 (1164)
54 PLN03150 hypothetical protein; 98.2 1.8E-06 4E-11 99.1 7.2 80 517-598 423-504 (623)
55 KOG2120 SCF ubiquitin ligase, 98.1 2.1E-07 4.5E-12 90.7 -2.2 180 516-730 189-374 (419)
56 COG3899 Predicted ATPase [Gene 98.1 6.8E-05 1.5E-09 88.6 17.4 159 292-466 211-385 (849)
57 PRK08727 hypothetical protein; 98.1 0.00013 2.8E-09 73.0 17.1 135 177-342 40-201 (233)
58 PF05496 RuvB_N: Holliday junc 98.1 4.7E-05 1E-09 73.1 12.7 180 155-348 24-224 (233)
59 PF12799 LRR_4: Leucine Rich r 98.1 3.8E-06 8.3E-11 58.9 4.0 41 536-577 1-41 (44)
60 PRK07003 DNA polymerase III su 98.1 0.00017 3.7E-09 81.3 18.2 185 155-346 16-222 (830)
61 KOG0531 Protein phosphatase 1, 98.0 1.2E-06 2.6E-11 96.1 0.0 122 495-637 72-201 (414)
62 PTZ00202 tuzin; Provisional 98.0 6.4E-05 1.4E-09 78.8 12.6 152 154-312 261-433 (550)
63 PF00308 Bac_DnaA: Bacterial d 98.0 0.00031 6.8E-09 69.3 16.8 173 155-344 9-207 (219)
64 KOG2028 ATPase related to the 98.0 0.00071 1.5E-08 68.4 18.8 114 177-313 161-294 (554)
65 PRK12402 replication factor C 98.0 0.00024 5.2E-09 76.0 16.8 183 155-344 15-225 (337)
66 PRK15386 type III secretion pr 97.9 3.5E-05 7.6E-10 81.2 9.1 54 535-594 51-104 (426)
67 PF13855 LRR_8: Leucine rich r 97.9 8.2E-06 1.8E-10 62.4 3.0 53 517-570 6-60 (61)
68 PLN03150 hypothetical protein; 97.9 2.5E-05 5.4E-10 89.9 8.0 107 537-667 419-527 (623)
69 PRK09087 hypothetical protein; 97.9 0.00039 8.4E-09 69.0 15.4 137 178-344 44-194 (226)
70 KOG2982 Uncharacterized conser 97.9 7.5E-06 1.6E-10 80.1 2.8 44 691-735 220-265 (418)
71 PRK04195 replication factor C 97.9 0.00099 2.2E-08 74.5 20.0 164 155-344 14-201 (482)
72 PRK08903 DnaA regulatory inact 97.8 0.00073 1.6E-08 67.6 16.9 168 157-349 21-203 (227)
73 PRK08084 DNA replication initi 97.8 0.00066 1.4E-08 68.0 16.2 160 155-344 23-208 (235)
74 PRK05564 DNA polymerase III su 97.8 0.00045 9.7E-09 72.7 14.6 164 155-344 4-189 (313)
75 PRK14087 dnaA chromosomal repl 97.8 0.00088 1.9E-08 73.6 17.3 156 178-346 141-320 (450)
76 PRK15386 type III secretion pr 97.8 4.5E-05 9.9E-10 80.4 6.6 78 493-578 50-133 (426)
77 PRK13341 recombination factor 97.7 0.0021 4.6E-08 74.3 20.4 162 155-340 28-212 (725)
78 PRK12323 DNA polymerase III su 97.7 0.00046 9.9E-09 76.8 14.2 186 155-344 16-224 (700)
79 PRK05642 DNA replication initi 97.7 0.0016 3.4E-08 65.2 16.8 140 178-345 45-208 (234)
80 KOG0531 Protein phosphatase 1, 97.7 5.2E-06 1.1E-10 91.1 -1.2 103 491-598 91-200 (414)
81 PRK14963 DNA polymerase III su 97.7 0.0003 6.4E-09 78.1 12.4 181 155-343 14-215 (504)
82 PF13191 AAA_16: AAA ATPase do 97.7 4.1E-05 9E-10 73.9 5.0 47 156-202 1-48 (185)
83 KOG1859 Leucine-rich repeat pr 97.7 1.6E-06 3.5E-11 94.3 -5.8 128 488-634 157-291 (1096)
84 TIGR01242 26Sp45 26S proteasom 97.7 0.00026 5.6E-09 76.2 11.0 48 155-202 122-180 (364)
85 PRK14960 DNA polymerase III su 97.6 0.001 2.2E-08 74.3 15.4 182 155-343 15-217 (702)
86 PRK14961 DNA polymerase III su 97.6 0.00092 2E-08 71.8 14.5 181 155-343 16-218 (363)
87 PLN03025 replication factor C 97.6 0.00069 1.5E-08 71.4 13.2 162 155-341 13-196 (319)
88 PRK00440 rfc replication facto 97.6 0.00092 2E-08 70.8 14.3 164 155-343 17-201 (319)
89 PRK14088 dnaA chromosomal repl 97.6 0.002 4.2E-08 70.8 17.1 149 178-343 130-303 (440)
90 KOG1909 Ran GTPase-activating 97.6 9.6E-06 2.1E-10 81.4 -1.0 175 533-730 89-309 (382)
91 cd01128 rho_factor Transcripti 97.6 0.00018 3.8E-09 72.1 7.6 39 177-217 15-53 (249)
92 PRK14956 DNA polymerase III su 97.6 0.00058 1.3E-08 74.0 11.8 180 155-342 18-219 (484)
93 COG1474 CDC6 Cdc6-related prot 97.6 0.0039 8.5E-08 66.3 17.8 186 155-345 17-238 (366)
94 TIGR00362 DnaA chromosomal rep 97.6 0.0033 7E-08 68.9 17.9 149 178-343 136-308 (405)
95 PF13173 AAA_14: AAA domain 97.6 0.0003 6.4E-09 63.2 8.1 110 178-305 2-127 (128)
96 COG2255 RuvB Holliday junction 97.5 0.0044 9.4E-08 61.1 16.1 176 155-345 26-223 (332)
97 PRK14949 DNA polymerase III su 97.5 0.0014 2.9E-08 75.7 14.6 182 155-344 16-219 (944)
98 PRK00149 dnaA chromosomal repl 97.5 0.0036 7.8E-08 69.4 17.8 172 155-343 123-320 (450)
99 KOG3665 ZYG-1-like serine/thre 97.5 2.6E-05 5.6E-10 89.4 0.4 122 529-669 140-264 (699)
100 KOG1909 Ran GTPase-activating 97.4 3.1E-05 6.8E-10 77.8 0.3 187 528-729 50-280 (382)
101 PRK14962 DNA polymerase III su 97.4 0.0027 5.8E-08 70.0 14.9 180 155-348 14-222 (472)
102 PRK14957 DNA polymerase III su 97.4 0.004 8.7E-08 69.4 15.9 173 155-346 16-222 (546)
103 PRK07994 DNA polymerase III su 97.4 0.0026 5.7E-08 72.0 14.4 183 155-344 16-219 (647)
104 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.2E-09 66.1 5.1 56 540-597 46-101 (233)
105 PRK06645 DNA polymerase III su 97.4 0.0032 7E-08 69.7 14.8 183 155-342 21-226 (507)
106 PTZ00361 26 proteosome regulat 97.4 0.0022 4.7E-08 69.6 13.2 48 155-202 183-241 (438)
107 KOG4579 Leucine-rich repeat (L 97.4 2.3E-05 5.1E-10 67.9 -1.5 78 517-597 58-136 (177)
108 PF12799 LRR_4: Leucine Rich r 97.4 0.00015 3.2E-09 50.9 2.7 36 517-553 6-41 (44)
109 PRK14086 dnaA chromosomal repl 97.4 0.03 6.5E-07 62.8 22.1 147 179-342 315-485 (617)
110 PF13401 AAA_22: AAA domain; P 97.4 0.00033 7.1E-09 63.2 5.8 85 177-264 3-96 (131)
111 PRK14951 DNA polymerase III su 97.4 0.0039 8.5E-08 70.5 15.4 184 155-344 16-224 (618)
112 PRK09376 rho transcription ter 97.3 0.00027 5.9E-09 73.8 5.5 49 166-217 158-206 (416)
113 KOG2120 SCF ubiquitin ligase, 97.3 3.1E-05 6.7E-10 75.9 -1.5 175 496-706 186-374 (419)
114 TIGR00763 lon ATP-dependent pr 97.3 0.015 3.3E-07 68.9 20.5 49 154-202 319-371 (775)
115 TIGR02397 dnaX_nterm DNA polym 97.3 0.0049 1.1E-07 66.4 15.3 167 155-345 14-218 (355)
116 PRK14955 DNA polymerase III su 97.3 0.0027 5.8E-08 69.1 13.0 180 155-343 16-226 (397)
117 KOG4579 Leucine-rich repeat (L 97.3 5E-05 1.1E-09 65.9 -0.6 81 496-578 54-141 (177)
118 PRK14964 DNA polymerase III su 97.3 0.0039 8.4E-08 68.5 13.7 180 155-342 13-214 (491)
119 PRK07940 DNA polymerase III su 97.3 0.006 1.3E-07 65.6 14.9 164 155-345 5-213 (394)
120 PRK14958 DNA polymerase III su 97.2 0.0051 1.1E-07 68.6 14.7 182 155-343 16-218 (509)
121 PRK09112 DNA polymerase III su 97.2 0.0072 1.6E-07 64.0 15.0 184 155-345 23-240 (351)
122 PF14516 AAA_35: AAA-like doma 97.2 0.093 2E-06 55.5 23.3 185 155-352 11-246 (331)
123 PRK06620 hypothetical protein; 97.2 0.017 3.6E-07 56.8 16.4 68 272-342 111-186 (214)
124 PRK10787 DNA-binding ATP-depen 97.2 0.009 2E-07 70.2 16.9 49 154-202 321-373 (784)
125 PRK08691 DNA polymerase III su 97.2 0.0055 1.2E-07 69.3 14.4 182 155-343 16-218 (709)
126 KOG2004 Mitochondrial ATP-depe 97.2 0.0045 9.8E-08 68.4 13.1 48 155-202 411-462 (906)
127 PRK12422 chromosomal replicati 97.2 0.0085 1.8E-07 65.7 15.5 141 178-337 141-305 (445)
128 KOG2982 Uncharacterized conser 97.2 0.0001 2.2E-09 72.4 0.5 78 517-597 76-159 (418)
129 cd00009 AAA The AAA+ (ATPases 97.2 0.00077 1.7E-08 62.0 6.5 55 158-217 1-55 (151)
130 PRK05896 DNA polymerase III su 97.2 0.0043 9.3E-08 69.3 12.9 185 155-347 16-223 (605)
131 PRK11331 5-methylcytosine-spec 97.2 0.0013 2.8E-08 70.5 8.5 58 155-217 175-232 (459)
132 PRK03992 proteasome-activating 97.1 0.003 6.5E-08 68.3 11.3 48 155-202 131-189 (389)
133 CHL00181 cbbX CbbX; Provisiona 97.1 0.012 2.6E-07 60.7 14.9 48 155-202 23-83 (287)
134 PRK07471 DNA polymerase III su 97.1 0.011 2.5E-07 62.9 15.0 181 155-345 19-238 (365)
135 PRK08118 topology modulation p 97.1 0.00047 1E-08 64.9 4.0 36 179-214 2-37 (167)
136 PRK07764 DNA polymerase III su 97.1 0.01 2.2E-07 69.7 15.6 182 155-343 15-219 (824)
137 COG0466 Lon ATP-dependent Lon 97.1 0.008 1.7E-07 66.8 13.6 48 155-202 323-374 (782)
138 PRK14970 DNA polymerase III su 97.1 0.023 4.9E-07 61.4 17.3 165 155-342 17-206 (367)
139 PRK14959 DNA polymerase III su 97.0 0.029 6.4E-07 63.2 18.1 186 155-349 16-225 (624)
140 PRK14950 DNA polymerase III su 97.0 0.009 1.9E-07 68.3 14.4 182 155-345 16-221 (585)
141 PRK09111 DNA polymerase III su 97.0 0.021 4.6E-07 64.8 17.2 183 155-344 24-232 (598)
142 TIGR00767 rho transcription te 97.0 0.002 4.3E-08 67.9 7.9 39 177-217 167-205 (415)
143 PRK14952 DNA polymerase III su 97.0 0.017 3.8E-07 65.1 15.5 186 155-348 13-223 (584)
144 PRK14969 DNA polymerase III su 97.0 0.02 4.3E-07 64.4 16.0 179 155-345 16-221 (527)
145 KOG1644 U2-associated snRNP A' 97.0 0.00063 1.4E-08 63.4 3.3 77 516-597 46-126 (233)
146 PRK14954 DNA polymerase III su 96.9 0.015 3.3E-07 66.0 14.8 182 155-345 16-229 (620)
147 PRK08116 hypothetical protein; 96.9 0.0059 1.3E-07 62.3 10.4 92 179-283 115-220 (268)
148 TIGR02880 cbbX_cfxQ probable R 96.9 0.024 5.2E-07 58.5 14.7 47 156-202 23-82 (284)
149 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0013 2.8E-08 68.5 5.2 47 156-202 52-102 (361)
150 PRK07261 topology modulation p 96.9 0.0022 4.8E-08 60.7 6.3 23 180-202 2-24 (171)
151 PRK06305 DNA polymerase III su 96.9 0.044 9.6E-07 60.4 17.3 47 155-202 17-63 (451)
152 TIGR00678 holB DNA polymerase 96.8 0.044 9.5E-07 52.9 15.5 60 273-341 125-187 (188)
153 PF10443 RNA12: RNA12 protein; 96.8 0.1 2.2E-06 55.4 18.8 188 160-356 1-289 (431)
154 PRK14971 DNA polymerase III su 96.8 0.017 3.7E-07 66.0 14.3 164 155-342 17-219 (614)
155 TIGR02881 spore_V_K stage V sp 96.8 0.029 6.3E-07 57.3 14.7 47 156-202 7-66 (261)
156 PF13207 AAA_17: AAA domain; P 96.8 0.001 2.2E-08 59.0 3.4 23 180-202 1-23 (121)
157 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0082 1.8E-07 71.3 11.7 46 155-202 187-232 (852)
158 COG0593 DnaA ATPase involved i 96.8 0.095 2.1E-06 55.9 18.2 150 155-321 88-265 (408)
159 PTZ00454 26S protease regulato 96.8 0.0097 2.1E-07 64.2 11.1 48 155-202 145-203 (398)
160 KOG3665 ZYG-1-like serine/thre 96.8 0.00069 1.5E-08 77.9 2.5 160 535-730 121-286 (699)
161 PF05621 TniB: Bacterial TniB 96.8 0.046 1E-06 55.5 15.0 184 155-342 34-258 (302)
162 TIGR02639 ClpA ATP-dependent C 96.8 0.018 3.8E-07 68.0 14.1 46 155-202 182-227 (731)
163 COG0542 clpA ATP-binding subun 96.7 0.046 1E-06 62.7 16.5 104 155-266 491-604 (786)
164 PRK07133 DNA polymerase III su 96.7 0.057 1.2E-06 61.9 17.3 180 155-346 18-221 (725)
165 TIGR03689 pup_AAA proteasome A 96.7 0.017 3.6E-07 63.9 12.5 48 155-202 182-240 (512)
166 CHL00095 clpC Clp protease ATP 96.7 0.012 2.6E-07 70.2 12.3 46 155-202 179-224 (821)
167 KOG2227 Pre-initiation complex 96.7 0.081 1.8E-06 56.1 16.6 156 154-317 149-342 (529)
168 PRK12377 putative replication 96.7 0.011 2.4E-07 59.2 9.9 49 177-228 100-148 (248)
169 PRK14953 DNA polymerase III su 96.7 0.095 2.1E-06 58.2 18.2 47 155-202 16-62 (486)
170 PRK06696 uridine kinase; Valid 96.6 0.0029 6.3E-08 62.9 5.6 44 159-202 2-46 (223)
171 PRK07952 DNA replication prote 96.6 0.017 3.6E-07 57.8 10.4 63 163-228 84-146 (244)
172 PRK08451 DNA polymerase III su 96.6 0.089 1.9E-06 58.6 17.0 184 155-345 14-218 (535)
173 KOG0989 Replication factor C, 96.5 0.016 3.6E-07 57.9 9.8 170 155-346 36-232 (346)
174 TIGR01241 FtsH_fam ATP-depende 96.5 0.025 5.4E-07 63.6 12.3 48 155-202 55-112 (495)
175 PRK14948 DNA polymerase III su 96.4 0.054 1.2E-06 61.9 14.8 184 155-344 16-221 (620)
176 PF00448 SRP54: SRP54-type pro 96.4 0.0063 1.4E-07 58.8 6.3 51 178-231 1-58 (196)
177 COG1222 RPT1 ATP-dependent 26S 96.4 0.035 7.7E-07 56.8 11.5 47 156-202 152-209 (406)
178 KOG4341 F-box protein containi 96.4 0.00048 1E-08 71.1 -1.8 226 517-755 169-439 (483)
179 COG3267 ExeA Type II secretory 96.4 0.15 3.3E-06 50.0 15.2 166 177-347 50-247 (269)
180 PRK07667 uridine kinase; Provi 96.4 0.0051 1.1E-07 59.6 5.3 39 164-202 3-41 (193)
181 PRK05563 DNA polymerase III su 96.3 0.078 1.7E-06 60.1 15.4 181 155-343 16-218 (559)
182 KOG3347 Predicted nucleotide k 96.3 0.011 2.4E-07 52.3 6.5 117 178-303 7-123 (176)
183 PRK06647 DNA polymerase III su 96.3 0.068 1.5E-06 60.4 14.5 180 155-343 16-218 (563)
184 PRK14965 DNA polymerase III su 96.3 0.11 2.3E-06 59.3 16.1 182 155-345 16-221 (576)
185 PRK11034 clpA ATP-dependent Cl 96.3 0.088 1.9E-06 61.5 15.6 46 155-202 186-231 (758)
186 KOG2739 Leucine-rich acidic nu 96.3 0.0019 4.1E-08 63.0 1.6 83 535-632 42-126 (260)
187 COG1102 Cmk Cytidylate kinase 96.2 0.0076 1.6E-07 54.3 5.1 44 180-231 2-45 (179)
188 PF00560 LRR_1: Leucine Rich R 96.2 0.0026 5.6E-08 37.0 1.2 22 537-558 1-22 (22)
189 PRK15455 PrkA family serine pr 96.1 0.0061 1.3E-07 66.9 4.9 47 156-202 77-127 (644)
190 CHL00176 ftsH cell division pr 96.1 0.083 1.8E-06 60.6 14.2 48 155-202 183-240 (638)
191 PHA00729 NTP-binding motif con 96.1 0.016 3.4E-07 56.6 7.2 35 166-202 7-41 (226)
192 PRK05707 DNA polymerase III su 96.1 0.22 4.8E-06 52.4 16.3 66 273-345 135-203 (328)
193 KOG2543 Origin recognition com 96.1 0.032 7E-07 57.5 9.4 70 154-229 5-81 (438)
194 COG1618 Predicted nucleotide k 96.1 0.0076 1.6E-07 54.3 4.3 36 178-215 5-40 (179)
195 TIGR00602 rad24 checkpoint pro 96.1 0.033 7.2E-07 63.3 10.5 48 155-202 84-134 (637)
196 PRK07399 DNA polymerase III su 96.0 0.15 3.2E-06 53.3 14.4 180 155-344 4-220 (314)
197 PRK13531 regulatory ATPase Rav 96.0 0.012 2.6E-07 63.9 6.3 44 155-202 20-63 (498)
198 KOG0744 AAA+-type ATPase [Post 96.0 0.058 1.3E-06 54.3 10.5 39 178-217 177-217 (423)
199 PRK10536 hypothetical protein; 96.0 0.034 7.5E-07 55.2 8.8 44 155-202 55-98 (262)
200 PRK06547 hypothetical protein; 95.9 0.011 2.4E-07 55.8 5.1 34 167-202 6-39 (172)
201 PRK12727 flagellar biosynthesi 95.9 0.1 2.2E-06 57.4 13.0 39 178-217 350-388 (559)
202 KOG2739 Leucine-rich acidic nu 95.9 0.0046 1E-07 60.4 2.5 63 534-598 63-130 (260)
203 TIGR01425 SRP54_euk signal rec 95.9 0.23 5.1E-06 53.6 15.6 38 177-217 99-136 (429)
204 PRK14722 flhF flagellar biosyn 95.9 0.32 6.9E-06 51.7 16.2 39 178-217 137-175 (374)
205 COG1223 Predicted ATPase (AAA+ 95.8 0.17 3.7E-06 49.5 12.4 48 155-202 121-175 (368)
206 PRK05541 adenylylsulfate kinas 95.8 0.012 2.7E-07 56.1 4.8 38 177-217 6-43 (176)
207 PF13238 AAA_18: AAA domain; P 95.8 0.0076 1.7E-07 53.9 3.1 22 181-202 1-22 (129)
208 TIGR01243 CDC48 AAA family ATP 95.8 0.14 3E-06 60.7 14.4 48 155-202 453-511 (733)
209 PRK00771 signal recognition pa 95.7 0.31 6.6E-06 53.2 15.7 38 177-217 94-131 (437)
210 PF05673 DUF815: Protein of un 95.7 0.83 1.8E-05 45.1 17.0 47 155-202 27-76 (249)
211 PRK09270 nucleoside triphospha 95.7 0.014 3.1E-07 58.2 5.1 27 176-202 31-57 (229)
212 PRK10865 protein disaggregatio 95.6 0.012 2.6E-07 70.2 5.0 46 155-202 178-223 (857)
213 PRK08233 hypothetical protein; 95.6 0.01 2.2E-07 57.0 3.6 25 178-202 3-27 (182)
214 COG0572 Udk Uridine kinase [Nu 95.6 0.034 7.4E-07 53.6 7.1 75 177-257 7-86 (218)
215 PRK04040 adenylate kinase; Pro 95.6 0.036 7.8E-07 53.2 7.3 47 178-230 2-48 (188)
216 cd00983 recA RecA is a bacter 95.6 0.051 1.1E-06 56.5 8.8 98 167-267 43-145 (325)
217 cd02019 NK Nucleoside/nucleoti 95.6 0.011 2.3E-07 46.4 2.9 23 180-202 1-23 (69)
218 KOG1947 Leucine rich repeat pr 95.6 0.0025 5.5E-08 71.8 -0.9 15 719-733 401-415 (482)
219 PF00485 PRK: Phosphoribulokin 95.6 0.01 2.2E-07 57.6 3.4 23 180-202 1-23 (194)
220 KOG2123 Uncharacterized conser 95.6 0.0011 2.4E-08 64.8 -3.3 35 534-569 39-73 (388)
221 PRK05480 uridine/cytidine kina 95.5 0.012 2.6E-07 57.9 3.9 26 177-202 5-30 (209)
222 PF05659 RPW8: Arabidopsis bro 95.5 0.075 1.6E-06 48.3 8.6 112 2-130 3-114 (147)
223 TIGR02639 ClpA ATP-dependent C 95.5 0.13 2.7E-06 60.9 12.9 49 154-202 453-508 (731)
224 KOG0991 Replication factor C, 95.5 0.017 3.7E-07 55.1 4.4 46 155-202 27-72 (333)
225 PRK10867 signal recognition pa 95.5 0.33 7.1E-06 52.8 14.7 39 177-217 99-137 (433)
226 TIGR00150 HI0065_YjeE ATPase, 95.5 0.026 5.6E-07 50.3 5.2 41 162-202 6-46 (133)
227 TIGR00235 udk uridine kinase. 95.4 0.014 3E-07 57.3 3.8 26 177-202 5-30 (207)
228 PRK06762 hypothetical protein; 95.4 0.014 2.9E-07 55.2 3.6 25 178-202 2-26 (166)
229 PHA02544 44 clamp loader, smal 95.4 0.019 4.1E-07 60.7 5.1 47 155-202 21-67 (316)
230 PTZ00301 uridine kinase; Provi 95.4 0.014 3E-07 57.0 3.7 25 178-202 3-27 (210)
231 COG5238 RNA1 Ran GTPase-activa 95.4 0.011 2.3E-07 57.9 2.8 93 531-634 87-197 (388)
232 TIGR02012 tigrfam_recA protein 95.4 0.078 1.7E-06 55.1 9.2 96 168-266 44-144 (321)
233 PRK09354 recA recombinase A; P 95.4 0.079 1.7E-06 55.5 9.2 98 167-267 48-150 (349)
234 PF13671 AAA_33: AAA domain; P 95.4 0.014 3E-07 53.4 3.4 23 180-202 1-23 (143)
235 PRK03839 putative kinase; Prov 95.3 0.014 3.1E-07 55.8 3.4 23 180-202 2-24 (180)
236 KOG0741 AAA+-type ATPase [Post 95.2 0.24 5.2E-06 53.3 12.2 150 176-335 536-704 (744)
237 cd01123 Rad51_DMC1_radA Rad51_ 95.2 0.076 1.6E-06 53.3 8.6 48 169-217 10-61 (235)
238 PF04665 Pox_A32: Poxvirus A32 95.2 0.042 9E-07 54.3 6.4 36 179-217 14-49 (241)
239 PF00004 AAA: ATPase family as 95.2 0.016 3.5E-07 52.0 3.3 22 181-202 1-22 (132)
240 TIGR01360 aden_kin_iso1 adenyl 95.2 0.017 3.7E-07 55.7 3.6 26 177-202 2-27 (188)
241 TIGR03346 chaperone_ClpB ATP-d 95.2 0.022 4.7E-07 68.3 5.1 46 155-202 173-218 (852)
242 COG5238 RNA1 Ran GTPase-activa 95.1 0.016 3.5E-07 56.7 3.1 81 517-598 35-134 (388)
243 smart00382 AAA ATPases associa 95.1 0.027 5.8E-07 51.0 4.6 36 179-217 3-38 (148)
244 CHL00195 ycf46 Ycf46; Provisio 95.1 0.4 8.7E-06 53.2 14.3 48 155-202 228-283 (489)
245 TIGR01243 CDC48 AAA family ATP 95.1 0.3 6.4E-06 57.9 14.2 48 155-202 178-236 (733)
246 PRK00625 shikimate kinase; Pro 95.1 0.02 4.3E-07 54.1 3.4 23 180-202 2-24 (173)
247 PF01583 APS_kinase: Adenylyls 95.0 0.032 7E-07 51.2 4.6 36 179-217 3-38 (156)
248 PRK05439 pantothenate kinase; 95.0 0.11 2.4E-06 53.7 9.0 28 175-202 83-110 (311)
249 KOG2123 Uncharacterized conser 95.0 0.0023 5E-08 62.6 -3.1 95 495-591 19-124 (388)
250 PRK06217 hypothetical protein; 95.0 0.021 4.6E-07 54.8 3.5 23 180-202 3-25 (183)
251 KOG2035 Replication factor C, 94.9 1.5 3.3E-05 43.6 15.6 214 157-391 15-283 (351)
252 COG1428 Deoxynucleoside kinase 94.9 0.022 4.8E-07 54.1 3.2 25 178-202 4-28 (216)
253 cd01393 recA_like RecA is a b 94.8 0.15 3.3E-06 50.8 9.5 47 168-217 9-61 (226)
254 TIGR00390 hslU ATP-dependent p 94.8 0.043 9.3E-07 58.4 5.4 48 155-202 12-71 (441)
255 PF07726 AAA_3: ATPase family 94.8 0.018 3.9E-07 50.4 2.2 27 181-210 2-28 (131)
256 TIGR02237 recomb_radB DNA repa 94.8 0.043 9.3E-07 54.0 5.2 39 176-217 10-48 (209)
257 PRK00131 aroK shikimate kinase 94.8 0.027 5.9E-07 53.5 3.7 26 177-202 3-28 (175)
258 KOG1532 GTPase XAB1, interacts 94.8 0.032 6.9E-07 54.7 4.0 26 177-202 18-43 (366)
259 KOG2228 Origin recognition com 94.8 0.3 6.5E-06 49.8 10.8 157 155-314 24-220 (408)
260 TIGR01359 UMP_CMP_kin_fam UMP- 94.7 0.021 4.6E-07 54.8 2.9 23 180-202 1-23 (183)
261 PRK08769 DNA polymerase III su 94.7 1.5 3.2E-05 45.8 16.5 64 273-345 142-208 (319)
262 PF06309 Torsin: Torsin; Inte 94.7 0.065 1.4E-06 46.8 5.4 48 155-202 25-77 (127)
263 COG1126 GlnQ ABC-type polar am 94.7 0.3 6.5E-06 46.8 10.1 25 178-202 28-52 (240)
264 PRK09361 radB DNA repair and r 94.7 0.059 1.3E-06 53.7 6.0 49 167-218 12-60 (225)
265 COG1373 Predicted ATPase (AAA+ 94.7 0.29 6.2E-06 53.2 11.6 126 160-309 22-163 (398)
266 TIGR03345 VI_ClpV1 type VI sec 94.7 0.12 2.5E-06 61.8 9.3 49 154-202 565-620 (852)
267 KOG1514 Origin recognition com 94.7 0.97 2.1E-05 50.7 15.5 154 155-314 396-590 (767)
268 COG0467 RAD55 RecA-superfamily 94.7 0.068 1.5E-06 54.6 6.5 41 176-219 21-61 (260)
269 cd02024 NRK1 Nicotinamide ribo 94.7 0.023 5.1E-07 54.2 2.8 23 180-202 1-23 (187)
270 PRK05201 hslU ATP-dependent pr 94.6 0.056 1.2E-06 57.6 5.8 49 154-202 14-74 (443)
271 PRK12608 transcription termina 94.6 0.12 2.7E-06 54.3 8.3 65 163-230 119-191 (380)
272 PF00158 Sigma54_activat: Sigm 94.6 0.049 1.1E-06 51.2 4.8 46 157-202 1-46 (168)
273 PRK10865 protein disaggregatio 94.6 0.68 1.5E-05 55.6 15.5 48 155-202 568-622 (857)
274 PRK00889 adenylylsulfate kinas 94.6 0.037 8E-07 52.7 4.0 26 177-202 3-28 (175)
275 COG1936 Predicted nucleotide k 94.5 0.028 6.1E-07 51.5 2.9 20 180-199 2-21 (180)
276 PF03308 ArgK: ArgK protein; 94.5 0.078 1.7E-06 52.4 6.1 52 163-217 14-65 (266)
277 PF02562 PhoH: PhoH-like prote 94.5 0.056 1.2E-06 52.2 5.0 54 159-217 4-57 (205)
278 PRK13947 shikimate kinase; Pro 94.5 0.032 6.8E-07 52.9 3.3 23 180-202 3-25 (171)
279 cd02028 UMPK_like Uridine mono 94.5 0.038 8.2E-07 52.7 3.9 23 180-202 1-23 (179)
280 cd02025 PanK Pantothenate kina 94.5 0.026 5.6E-07 55.8 2.8 23 180-202 1-23 (220)
281 cd02023 UMPK Uridine monophosp 94.5 0.027 5.8E-07 54.9 2.9 23 180-202 1-23 (198)
282 PF00910 RNA_helicase: RNA hel 94.4 0.029 6.2E-07 48.4 2.7 22 181-202 1-22 (107)
283 PF00154 RecA: recA bacterial 94.4 0.12 2.6E-06 53.6 7.5 87 177-266 52-142 (322)
284 PRK11889 flhF flagellar biosyn 94.4 0.21 4.6E-06 52.8 9.3 38 177-217 240-277 (436)
285 cd01394 radB RadB. The archaea 94.4 0.086 1.9E-06 52.2 6.4 48 167-217 8-55 (218)
286 TIGR02322 phosphon_PhnN phosph 94.4 0.035 7.6E-07 53.1 3.4 24 179-202 2-25 (179)
287 cd02020 CMPK Cytidine monophos 94.4 0.03 6.6E-07 51.4 2.9 23 180-202 1-23 (147)
288 TIGR00554 panK_bact pantothena 94.3 0.048 1E-06 55.9 4.4 26 177-202 61-86 (290)
289 COG1703 ArgK Putative periplas 94.3 0.058 1.3E-06 54.0 4.8 39 164-202 37-75 (323)
290 PRK13949 shikimate kinase; Pro 94.3 0.038 8.2E-07 52.1 3.4 23 180-202 3-25 (169)
291 cd00227 CPT Chloramphenicol (C 94.3 0.037 8.1E-07 52.6 3.4 24 179-202 3-26 (175)
292 TIGR00064 ftsY signal recognit 94.3 0.098 2.1E-06 53.5 6.6 38 177-217 71-108 (272)
293 PRK10463 hydrogenase nickel in 94.3 0.11 2.3E-06 52.9 6.7 26 177-202 103-128 (290)
294 PRK13765 ATP-dependent proteas 94.3 0.065 1.4E-06 61.2 5.7 70 155-230 31-105 (637)
295 KOG0728 26S proteasome regulat 94.2 0.71 1.5E-05 44.8 11.6 47 156-202 147-205 (404)
296 COG3640 CooC CO dehydrogenase 94.2 0.056 1.2E-06 52.2 4.2 23 180-202 2-24 (255)
297 PRK04328 hypothetical protein; 94.2 0.22 4.8E-06 50.3 9.0 48 167-217 12-59 (249)
298 cd02021 GntK Gluconate kinase 94.2 0.034 7.4E-07 51.4 2.8 23 180-202 1-23 (150)
299 PF03205 MobB: Molybdopterin g 94.2 0.069 1.5E-06 48.5 4.7 37 179-217 1-37 (140)
300 COG1224 TIP49 DNA helicase TIP 94.2 0.18 3.9E-06 51.7 7.9 55 154-209 38-95 (450)
301 PF01695 IstB_IS21: IstB-like 94.2 0.059 1.3E-06 51.3 4.4 46 178-226 47-92 (178)
302 TIGR00764 lon_rel lon-related 94.2 0.1 2.2E-06 59.8 7.0 70 155-230 18-92 (608)
303 COG0563 Adk Adenylate kinase a 94.2 0.039 8.4E-07 52.3 3.1 23 180-202 2-24 (178)
304 KOG0730 AAA+-type ATPase [Post 94.1 1.4 2.9E-05 49.3 15.0 52 155-209 434-496 (693)
305 PRK14530 adenylate kinase; Pro 94.1 0.042 9.2E-07 54.3 3.4 24 179-202 4-27 (215)
306 PRK08181 transposase; Validate 94.1 0.11 2.4E-06 52.8 6.4 45 179-226 107-151 (269)
307 PF08423 Rad51: Rad51; InterP 94.1 0.12 2.5E-06 52.5 6.6 64 166-230 26-98 (256)
308 PF00625 Guanylate_kin: Guanyl 94.1 0.073 1.6E-06 51.1 4.9 37 178-217 2-38 (183)
309 cd02029 PRK_like Phosphoribulo 94.1 0.69 1.5E-05 46.4 11.7 23 180-202 1-23 (277)
310 COG1484 DnaC DNA replication p 94.0 0.081 1.8E-06 53.5 5.3 50 177-229 104-153 (254)
311 PRK13948 shikimate kinase; Pro 94.0 0.056 1.2E-06 51.5 3.9 26 177-202 9-34 (182)
312 PRK12339 2-phosphoglycerate ki 94.0 0.051 1.1E-06 52.5 3.7 25 178-202 3-27 (197)
313 PRK06835 DNA replication prote 94.0 0.12 2.7E-06 54.1 6.8 45 179-226 184-228 (329)
314 PF07728 AAA_5: AAA domain (dy 94.0 0.043 9.4E-07 49.9 3.0 22 181-202 2-23 (139)
315 PRK14738 gmk guanylate kinase; 94.0 0.05 1.1E-06 53.3 3.6 29 173-201 8-36 (206)
316 PRK10751 molybdopterin-guanine 94.0 0.056 1.2E-06 50.6 3.7 26 177-202 5-30 (173)
317 PLN02318 phosphoribulokinase/u 94.0 0.069 1.5E-06 59.2 4.9 35 168-202 55-89 (656)
318 PRK08939 primosomal protein Dn 93.9 0.14 3.1E-06 53.2 7.0 67 159-228 135-203 (306)
319 PRK03846 adenylylsulfate kinas 93.9 0.06 1.3E-06 52.4 4.0 26 177-202 23-48 (198)
320 PRK08058 DNA polymerase III su 93.9 1.9 4.2E-05 45.5 15.7 46 156-202 6-52 (329)
321 PF13504 LRR_7: Leucine rich r 93.9 0.037 8.1E-07 29.8 1.4 16 537-552 2-17 (17)
322 TIGR02902 spore_lonB ATP-depen 93.9 0.11 2.4E-06 58.6 6.7 45 155-201 65-109 (531)
323 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.15 3.1E-06 51.3 6.8 57 167-226 10-66 (237)
324 cd00464 SK Shikimate kinase (S 93.9 0.049 1.1E-06 50.5 3.2 22 181-202 2-23 (154)
325 PRK14974 cell division protein 93.8 0.19 4E-06 52.8 7.7 26 177-202 139-164 (336)
326 TIGR03263 guanyl_kin guanylate 93.8 0.049 1.1E-06 52.1 3.2 24 179-202 2-25 (180)
327 cd00071 GMPK Guanosine monopho 93.8 0.052 1.1E-06 49.2 3.2 23 180-202 1-23 (137)
328 PF13306 LRR_5: Leucine rich r 93.8 0.14 3.1E-06 45.6 6.1 60 531-593 7-67 (129)
329 PF13245 AAA_19: Part of AAA d 93.8 0.19 4E-06 40.1 5.9 51 178-228 10-62 (76)
330 KOG4341 F-box protein containi 93.8 0.0059 1.3E-07 63.3 -3.3 211 517-753 143-383 (483)
331 PF01078 Mg_chelatase: Magnesi 93.8 0.096 2.1E-06 50.3 5.0 44 155-202 3-46 (206)
332 COG2019 AdkA Archaeal adenylat 93.8 0.059 1.3E-06 49.0 3.3 47 178-231 4-50 (189)
333 COG2884 FtsE Predicted ATPase 93.8 0.28 6E-06 45.9 7.7 26 177-202 27-52 (223)
334 PF08298 AAA_PrkA: PrkA AAA do 93.8 0.09 2E-06 54.5 5.1 48 155-202 61-112 (358)
335 TIGR02238 recomb_DMC1 meiotic 93.8 0.28 6E-06 51.2 8.8 65 166-231 84-157 (313)
336 TIGR01069 mutS2 MutS2 family p 93.8 0.99 2.2E-05 53.3 14.3 25 177-201 321-345 (771)
337 COG2812 DnaX DNA polymerase II 93.7 0.27 5.9E-06 54.2 9.0 175 155-339 16-214 (515)
338 KOG0733 Nuclear AAA ATPase (VC 93.7 0.82 1.8E-05 50.4 12.2 139 178-338 545-717 (802)
339 cd03216 ABC_Carb_Monos_I This 93.7 0.4 8.6E-06 44.9 9.1 35 178-216 26-60 (163)
340 PRK06067 flagellar accessory p 93.7 0.16 3.5E-06 50.9 6.8 57 167-226 14-70 (234)
341 PRK00409 recombination and DNA 93.7 0.52 1.1E-05 55.8 11.9 24 177-200 326-349 (782)
342 PRK13975 thymidylate kinase; P 93.7 0.059 1.3E-06 52.4 3.5 24 179-202 3-26 (196)
343 PRK14527 adenylate kinase; Pro 93.7 0.063 1.4E-06 51.9 3.7 26 177-202 5-30 (191)
344 PF12061 DUF3542: Protein of u 93.7 0.11 2.4E-06 51.9 5.2 73 13-93 301-373 (402)
345 PRK00300 gmk guanylate kinase; 93.7 0.061 1.3E-06 52.7 3.6 26 177-202 4-29 (205)
346 TIGR02030 BchI-ChlI magnesium 93.7 0.092 2E-06 55.2 5.1 46 155-202 4-49 (337)
347 TIGR00959 ffh signal recogniti 93.6 0.32 7E-06 52.9 9.3 26 177-202 98-123 (428)
348 PRK06526 transposase; Provisio 93.6 0.052 1.1E-06 54.8 3.1 44 179-225 99-142 (254)
349 PRK09435 membrane ATPase/prote 93.6 0.17 3.7E-06 53.0 6.9 39 164-202 42-80 (332)
350 cd03115 SRP The signal recogni 93.6 0.15 3.2E-06 48.4 6.1 23 180-202 2-24 (173)
351 cd01121 Sms Sms (bacterial rad 93.6 0.29 6.3E-06 52.3 8.8 51 165-218 69-119 (372)
352 PRK13946 shikimate kinase; Pro 93.6 0.065 1.4E-06 51.4 3.6 25 178-202 10-34 (184)
353 PRK05057 aroK shikimate kinase 93.6 0.065 1.4E-06 50.7 3.5 25 178-202 4-28 (172)
354 cd01120 RecA-like_NTPases RecA 93.6 0.083 1.8E-06 49.3 4.2 35 180-217 1-35 (165)
355 PLN02200 adenylate kinase fami 93.5 0.071 1.5E-06 53.2 3.8 26 177-202 42-67 (234)
356 COG0541 Ffh Signal recognition 93.5 3.4 7.4E-05 44.1 16.0 52 177-231 99-157 (451)
357 PRK09183 transposase/IS protei 93.5 0.12 2.6E-06 52.4 5.5 43 179-224 103-145 (259)
358 cd01124 KaiC KaiC is a circadi 93.5 0.11 2.3E-06 50.1 4.9 37 180-219 1-37 (187)
359 PRK05342 clpX ATP-dependent pr 93.5 0.11 2.5E-06 56.2 5.5 49 154-202 70-132 (412)
360 PF08477 Miro: Miro-like prote 93.5 0.067 1.4E-06 47.0 3.2 22 181-202 2-23 (119)
361 KOG0733 Nuclear AAA ATPase (VC 93.4 1.2 2.7E-05 49.0 13.0 48 155-202 190-247 (802)
362 cd02027 APSK Adenosine 5'-phos 93.4 0.06 1.3E-06 49.6 2.9 23 180-202 1-23 (149)
363 TIGR01313 therm_gnt_kin carboh 93.4 0.053 1.1E-06 50.9 2.6 22 181-202 1-22 (163)
364 COG1124 DppF ABC-type dipeptid 93.4 0.1 2.2E-06 50.8 4.4 26 177-202 32-57 (252)
365 PRK13407 bchI magnesium chelat 93.4 0.099 2.1E-06 54.9 4.8 46 155-202 8-53 (334)
366 TIGR01287 nifH nitrogenase iro 93.3 0.062 1.3E-06 55.4 3.2 24 179-202 1-24 (275)
367 PF03215 Rad17: Rad17 cell cyc 93.3 0.12 2.7E-06 57.5 5.7 58 155-217 19-79 (519)
368 KOG0738 AAA+-type ATPase [Post 93.3 0.83 1.8E-05 47.6 10.9 47 156-202 213-269 (491)
369 PRK10078 ribose 1,5-bisphospho 93.3 0.067 1.5E-06 51.5 3.2 24 179-202 3-26 (186)
370 PRK06871 DNA polymerase III su 93.3 4.5 9.8E-05 42.4 16.8 62 273-342 136-200 (325)
371 COG0714 MoxR-like ATPases [Gen 93.3 0.11 2.4E-06 55.0 5.1 44 155-202 24-67 (329)
372 cd02117 NifH_like This family 93.3 0.068 1.5E-06 52.7 3.3 24 179-202 1-24 (212)
373 PRK06921 hypothetical protein; 93.3 0.17 3.6E-06 51.7 6.1 46 177-224 116-161 (266)
374 PF03029 ATP_bind_1: Conserved 93.3 0.091 2E-06 52.5 4.1 32 183-217 1-32 (238)
375 TIGR02640 gas_vesic_GvpN gas v 93.3 0.12 2.7E-06 52.6 5.2 36 163-202 10-45 (262)
376 PRK05537 bifunctional sulfate 93.2 0.12 2.6E-06 58.6 5.5 48 155-202 369-416 (568)
377 CHL00081 chlI Mg-protoporyphyr 93.2 0.099 2.2E-06 55.0 4.5 46 155-202 17-62 (350)
378 TIGR03881 KaiC_arch_4 KaiC dom 93.2 0.24 5.1E-06 49.5 7.1 48 167-217 9-56 (229)
379 KOG0731 AAA+-type ATPase conta 93.2 0.56 1.2E-05 53.8 10.5 63 277-342 453-521 (774)
380 PRK05973 replicative DNA helic 93.2 0.24 5.1E-06 49.2 6.7 39 177-218 63-101 (237)
381 PRK04182 cytidylate kinase; Pr 93.2 0.078 1.7E-06 50.6 3.4 43 180-230 2-44 (180)
382 COG0703 AroK Shikimate kinase 93.2 0.084 1.8E-06 49.0 3.4 24 179-202 3-26 (172)
383 COG0468 RecA RecA/RadA recombi 93.2 0.35 7.7E-06 49.1 8.1 46 169-217 51-96 (279)
384 PF03266 NTPase_1: NTPase; In 93.1 0.076 1.7E-06 49.9 3.2 22 181-202 2-23 (168)
385 PF14532 Sigma54_activ_2: Sigm 93.1 0.073 1.6E-06 48.3 3.0 45 158-202 1-45 (138)
386 PF13504 LRR_7: Leucine rich r 93.1 0.051 1.1E-06 29.2 1.1 17 719-736 1-17 (17)
387 TIGR00750 lao LAO/AO transport 93.1 0.11 2.5E-06 54.1 4.7 38 165-202 21-58 (300)
388 PF06068 TIP49: TIP49 C-termin 93.1 0.15 3.2E-06 53.1 5.3 49 154-202 23-74 (398)
389 PF13521 AAA_28: AAA domain; P 93.1 0.07 1.5E-06 50.1 2.8 38 181-229 2-39 (163)
390 PRK04296 thymidine kinase; Pro 93.1 0.2 4.3E-06 48.3 6.0 101 179-285 3-117 (190)
391 PRK15453 phosphoribulokinase; 93.1 0.097 2.1E-06 52.8 3.9 26 177-202 4-29 (290)
392 PRK13695 putative NTPase; Prov 93.0 0.12 2.7E-06 49.0 4.5 23 180-202 2-24 (174)
393 PRK12723 flagellar biosynthesi 93.0 0.67 1.5E-05 49.7 10.4 40 177-217 173-214 (388)
394 TIGR03600 phage_DnaB phage rep 93.0 2.6 5.5E-05 46.5 15.4 48 177-226 193-244 (421)
395 PF13306 LRR_5: Leucine rich r 93.0 0.33 7.2E-06 43.2 7.1 39 554-594 7-45 (129)
396 TIGR00073 hypB hydrogenase acc 93.0 0.11 2.4E-06 50.9 4.2 26 177-202 21-46 (207)
397 CHL00095 clpC Clp protease ATP 93.0 2.3 5E-05 51.1 16.0 48 155-202 509-563 (821)
398 cd00820 PEPCK_HprK Phosphoenol 93.0 0.093 2E-06 44.7 3.1 22 178-199 15-36 (107)
399 TIGR03574 selen_PSTK L-seryl-t 92.9 0.072 1.6E-06 54.0 2.9 23 180-202 1-23 (249)
400 COG0237 CoaE Dephospho-CoA kin 92.9 0.094 2E-06 50.6 3.5 23 178-200 2-24 (201)
401 PF02374 ArsA_ATPase: Anion-tr 92.9 0.08 1.7E-06 55.1 3.2 24 179-202 2-25 (305)
402 COG0003 ArsA Predicted ATPase 92.9 0.13 2.8E-06 53.5 4.7 37 178-217 2-38 (322)
403 PTZ00088 adenylate kinase 1; P 92.9 0.083 1.8E-06 52.4 3.2 23 180-202 8-30 (229)
404 PLN03187 meiotic recombination 92.9 0.39 8.5E-06 50.6 8.3 65 167-231 115-187 (344)
405 PLN02348 phosphoribulokinase 92.9 0.2 4.4E-06 53.1 6.1 27 176-202 47-73 (395)
406 PF02367 UPF0079: Uncharacteri 92.9 0.16 3.4E-06 44.6 4.5 26 177-202 14-39 (123)
407 TIGR00382 clpX endopeptidase C 92.9 0.17 3.7E-06 54.6 5.7 49 154-202 76-140 (413)
408 PLN03186 DNA repair protein RA 92.9 0.37 7.9E-06 50.9 8.1 66 165-231 110-184 (342)
409 PF00560 LRR_1: Leucine Rich R 92.9 0.041 8.9E-07 31.9 0.6 22 560-583 1-22 (22)
410 PRK14737 gmk guanylate kinase; 92.8 0.1 2.2E-06 50.1 3.6 26 177-202 3-28 (186)
411 TIGR02173 cyt_kin_arch cytidyl 92.8 0.093 2E-06 49.6 3.4 43 180-230 2-44 (171)
412 PRK10733 hflB ATP-dependent me 92.8 1.8 3.9E-05 50.3 14.4 47 156-202 153-209 (644)
413 KOG0734 AAA+-type ATPase conta 92.8 0.13 2.8E-06 55.4 4.5 48 155-202 304-361 (752)
414 PRK03731 aroL shikimate kinase 92.8 0.094 2E-06 49.6 3.4 24 179-202 3-26 (171)
415 TIGR00176 mobB molybdopterin-g 92.8 0.086 1.9E-06 48.8 3.0 23 180-202 1-23 (155)
416 TIGR03499 FlhF flagellar biosy 92.8 0.1 2.2E-06 53.8 3.7 40 177-217 193-232 (282)
417 PRK14532 adenylate kinase; Pro 92.8 0.088 1.9E-06 50.8 3.1 35 181-223 3-37 (188)
418 PRK06761 hypothetical protein; 92.8 0.14 3E-06 52.2 4.6 24 179-202 4-27 (282)
419 cd01983 Fer4_NifH The Fer4_Nif 92.7 0.095 2.1E-06 43.9 2.9 23 180-202 1-23 (99)
420 KOG0736 Peroxisome assembly fa 92.7 1.3 2.9E-05 50.2 12.3 48 155-202 672-729 (953)
421 KOG4252 GTP-binding protein [S 92.7 0.21 4.6E-06 45.5 5.1 36 180-217 22-57 (246)
422 PRK07993 DNA polymerase III su 92.7 4.2 9.2E-05 42.9 15.8 63 273-343 137-202 (334)
423 COG0542 clpA ATP-binding subun 92.7 0.15 3.2E-06 58.7 5.2 45 156-202 171-215 (786)
424 KOG1969 DNA replication checkp 92.7 0.18 3.9E-06 56.5 5.5 26 177-202 325-350 (877)
425 cd01428 ADK Adenylate kinase ( 92.6 0.093 2E-06 50.8 3.1 22 181-202 2-23 (194)
426 KOG1051 Chaperone HSP104 and r 92.6 0.67 1.4E-05 54.4 10.4 101 155-264 562-669 (898)
427 PRK13230 nitrogenase reductase 92.6 0.094 2E-06 54.2 3.3 24 179-202 2-25 (279)
428 COG0464 SpoVK ATPases of the A 92.6 1.1 2.5E-05 50.4 12.3 53 155-210 242-305 (494)
429 PF06564 YhjQ: YhjQ protein; 92.6 0.098 2.1E-06 51.8 3.2 24 179-202 2-26 (243)
430 PRK13236 nitrogenase reductase 92.6 0.11 2.4E-06 54.1 3.7 26 177-202 5-30 (296)
431 PRK13768 GTPase; Provisional 92.6 0.15 3.2E-06 51.7 4.6 24 179-202 3-26 (253)
432 KOG0473 Leucine-rich repeat pr 92.6 0.0076 1.7E-07 57.5 -4.3 76 517-595 47-122 (326)
433 PRK09825 idnK D-gluconate kina 92.6 0.11 2.4E-06 49.4 3.4 24 179-202 4-27 (176)
434 PRK13232 nifH nitrogenase redu 92.5 0.099 2.1E-06 53.8 3.3 24 179-202 2-25 (273)
435 PTZ00494 tuzin-like protein; P 92.5 3.4 7.4E-05 44.2 14.2 153 154-313 370-544 (664)
436 PRK12726 flagellar biosynthesi 92.5 0.38 8.2E-06 50.8 7.5 38 177-217 205-242 (407)
437 TIGR00665 DnaB replicative DNA 92.5 4.1 8.8E-05 45.1 16.2 48 177-226 194-245 (434)
438 PRK10416 signal recognition pa 92.4 0.19 4.2E-06 52.5 5.3 26 177-202 113-138 (318)
439 cd02040 NifH NifH gene encodes 92.4 0.1 2.2E-06 53.6 3.2 24 179-202 2-25 (270)
440 PRK14531 adenylate kinase; Pro 92.4 0.12 2.6E-06 49.5 3.5 24 179-202 3-26 (183)
441 TIGR03878 thermo_KaiC_2 KaiC d 92.4 0.21 4.6E-06 50.8 5.4 38 177-217 35-72 (259)
442 COG4088 Predicted nucleotide k 92.4 0.11 2.3E-06 49.1 2.8 24 179-202 2-25 (261)
443 PRK14493 putative bifunctional 92.3 0.15 3.2E-06 52.0 4.2 24 179-202 2-25 (274)
444 PRK11823 DNA repair protein Ra 92.3 0.5 1.1E-05 52.1 8.6 58 164-224 66-123 (446)
445 cd01878 HflX HflX subfamily. 92.3 0.25 5.4E-06 48.3 5.7 26 177-202 40-65 (204)
446 KOG0652 26S proteasome regulat 92.3 3.9 8.4E-05 40.2 13.3 54 149-202 163-229 (424)
447 cd01672 TMPK Thymidine monopho 92.3 0.12 2.6E-06 50.2 3.4 23 180-202 2-24 (200)
448 COG0194 Gmk Guanylate kinase [ 92.3 0.13 2.9E-06 47.9 3.4 25 178-202 4-28 (191)
449 PRK09519 recA DNA recombinatio 92.3 0.5 1.1E-05 54.9 8.7 99 166-267 47-150 (790)
450 PRK10646 ADP-binding protein; 92.2 0.26 5.6E-06 45.0 5.2 42 161-202 11-52 (153)
451 PRK08840 replicative DNA helic 92.2 5.8 0.00013 44.0 16.7 49 177-227 216-268 (464)
452 PRK08099 bifunctional DNA-bind 92.2 0.12 2.6E-06 55.9 3.5 26 177-202 218-243 (399)
453 PRK12338 hypothetical protein; 92.2 0.14 3E-06 53.0 3.8 26 177-202 3-28 (319)
454 cd02022 DPCK Dephospho-coenzym 92.2 0.11 2.3E-06 49.7 2.8 21 180-200 1-21 (179)
455 PRK08533 flagellar accessory p 92.2 0.24 5.2E-06 49.3 5.4 38 177-217 23-60 (230)
456 TIGR02239 recomb_RAD51 DNA rep 92.2 0.51 1.1E-05 49.4 8.1 65 165-230 83-156 (316)
457 PRK05703 flhF flagellar biosyn 92.1 0.3 6.5E-06 53.3 6.6 39 178-217 221-259 (424)
458 cd01133 F1-ATPase_beta F1 ATP 92.1 0.22 4.8E-06 50.3 5.1 38 177-217 68-106 (274)
459 PRK08506 replicative DNA helic 92.1 6.3 0.00014 43.9 17.0 48 177-227 191-242 (472)
460 COG0529 CysC Adenylylsulfate k 92.1 0.17 3.7E-06 46.6 3.8 26 177-202 22-47 (197)
461 TIGR01650 PD_CobS cobaltochela 92.1 0.33 7.2E-06 50.3 6.4 43 156-202 46-88 (327)
462 PRK01184 hypothetical protein; 92.1 0.13 2.7E-06 49.5 3.2 21 179-200 2-22 (184)
463 cd01131 PilT Pilus retraction 92.1 0.2 4.3E-06 48.7 4.6 24 179-202 2-25 (198)
464 PLN02165 adenylate isopentenyl 92.1 0.14 3.1E-06 53.1 3.7 26 177-202 42-67 (334)
465 PRK14528 adenylate kinase; Pro 92.0 0.14 3E-06 49.2 3.5 24 179-202 2-25 (186)
466 COG1763 MobB Molybdopterin-gua 92.0 0.14 3.1E-06 47.2 3.4 25 178-202 2-26 (161)
467 cd00561 CobA_CobO_BtuR ATP:cor 92.0 0.74 1.6E-05 42.5 8.0 103 179-284 3-138 (159)
468 PF00005 ABC_tran: ABC transpo 92.0 0.11 2.4E-06 47.0 2.7 25 178-202 11-35 (137)
469 PRK13235 nifH nitrogenase redu 92.0 0.12 2.7E-06 53.1 3.3 24 179-202 2-25 (274)
470 PRK11034 clpA ATP-dependent Cl 92.0 0.24 5.2E-06 58.0 5.9 48 155-202 458-512 (758)
471 PF03193 DUF258: Protein of un 92.0 0.26 5.7E-06 45.5 5.0 37 161-202 23-59 (161)
472 COG1066 Sms Predicted ATP-depe 91.9 0.88 1.9E-05 48.0 9.2 99 163-267 78-180 (456)
473 COG1100 GTPase SAR1 and relate 91.9 0.11 2.5E-06 51.3 2.8 24 179-202 6-29 (219)
474 PF06745 KaiC: KaiC; InterPro 91.9 0.21 4.5E-06 49.8 4.7 57 169-227 10-66 (226)
475 TIGR01351 adk adenylate kinase 91.9 0.13 2.8E-06 50.6 3.1 22 181-202 2-23 (210)
476 COG1419 FlhF Flagellar GTP-bin 91.9 0.57 1.2E-05 49.6 7.9 39 178-217 203-241 (407)
477 PF10662 PduV-EutP: Ethanolami 91.9 0.14 3E-06 46.1 3.0 24 179-202 2-25 (143)
478 PRK13233 nifH nitrogenase redu 91.9 0.13 2.8E-06 53.0 3.3 24 179-202 3-26 (275)
479 PRK08356 hypothetical protein; 91.9 0.16 3.4E-06 49.3 3.6 22 178-199 5-26 (195)
480 cd03269 ABC_putative_ATPase Th 91.9 0.23 5.1E-06 48.8 4.9 26 177-202 25-50 (210)
481 PF00406 ADK: Adenylate kinase 91.8 0.12 2.6E-06 47.8 2.7 35 183-225 1-35 (151)
482 TIGR03880 KaiC_arch_3 KaiC dom 91.8 0.4 8.7E-06 47.6 6.7 55 168-225 6-60 (224)
483 PRK04301 radA DNA repair and r 91.8 0.52 1.1E-05 49.6 7.8 51 166-217 90-144 (317)
484 PRK02496 adk adenylate kinase; 91.8 0.14 3E-06 49.2 3.2 23 180-202 3-25 (184)
485 PHA02530 pseT polynucleotide k 91.8 0.14 3E-06 53.6 3.5 24 179-202 3-26 (300)
486 cd03116 MobB Molybdenum is an 91.8 0.17 3.6E-06 47.0 3.5 24 179-202 2-25 (159)
487 PF01926 MMR_HSR1: 50S ribosom 91.8 0.14 3.1E-06 44.7 3.0 21 181-201 2-22 (116)
488 PRK00279 adk adenylate kinase; 91.8 0.15 3.2E-06 50.4 3.4 23 180-202 2-24 (215)
489 cd04139 RalA_RalB RalA/RalB su 91.8 0.14 2.9E-06 47.9 3.1 23 180-202 2-24 (164)
490 TIGR00960 3a0501s02 Type II (G 91.8 0.24 5.1E-06 49.0 4.9 25 178-202 29-53 (216)
491 PRK14721 flhF flagellar biosyn 91.8 0.4 8.6E-06 51.9 6.8 39 178-217 191-229 (420)
492 PHA02244 ATPase-like protein 91.7 0.2 4.4E-06 52.6 4.4 44 155-202 96-143 (383)
493 smart00072 GuKc Guanylate kina 91.7 0.19 4.1E-06 48.2 4.1 25 178-202 2-26 (184)
494 cd03114 ArgK-like The function 91.7 0.23 4.9E-06 45.7 4.3 23 180-202 1-23 (148)
495 TIGR01166 cbiO cobalt transpor 91.7 0.25 5.4E-06 47.7 4.8 25 178-202 18-42 (190)
496 TIGR00041 DTMP_kinase thymidyl 91.7 0.16 3.5E-06 49.2 3.5 24 179-202 4-27 (195)
497 PLN02796 D-glycerate 3-kinase 91.7 0.17 3.6E-06 52.8 3.8 26 177-202 99-124 (347)
498 PRK05748 replicative DNA helic 91.7 5.7 0.00012 44.1 16.2 49 177-227 202-254 (448)
499 COG1875 NYN ribonuclease and A 91.7 0.25 5.4E-06 50.9 4.8 54 158-213 227-280 (436)
500 TIGR02016 BchX chlorophyllide 91.7 0.15 3.1E-06 53.0 3.3 24 179-202 1-24 (296)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-85 Score=754.33 Aligned_cols=740 Identities=38% Similarity=0.606 Sum_probs=591.6
Q ss_pred hhhHHHHHHHHHhhhhcchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCchhHHHHHHHHHHHHHHHHHHH
Q 004021 10 PPDLFSRTLHRVGEQANYVWGLKKNLEGLKTEMRKLTRTRDDLVNKVEVEEQPRRTRRTNRVAGWLEDVQKLGTEFTELQ 89 (779)
Q Consensus 10 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~~Wl~~l~~~~~d~ed~l 89 (779)
++-.++++.+.+.+++..+.+.++++..+++++..|+++++| ++.++ .....+..|...+++++|+++|.+
T Consensus 5 ~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~--~~~~~~~~~~e~~~~~~~~~e~~~ 75 (889)
T KOG4658|consen 5 VSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKR--DDLERRVNWEEDVGDLVYLAEDII 75 (889)
T ss_pred EEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888899999999999999999999999999999998 55555 456778999999999999999999
Q ss_pred HHHHHHhhh----------------hhcCCCCccccccccchHHHHHHHHHHHHHHHhcCcccccccc-cCCCCcccccc
Q 004021 90 QVRAQEMDR----------------LCLGGLCSKNLVSSYNYGREVVELTDRVINLNKDGEKIAVVVE-KAPDGAAIELP 152 (779)
Q Consensus 90 d~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (779)
+.|...... .|..+++.......+.+++++-.+.+.++.+..++. |..+.. ..+......+|
T Consensus 76 ~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~~~~~~~~~~~e~~~ 154 (889)
T KOG4658|consen 76 WLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVVGESLDPREKVETRP 154 (889)
T ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-eecccccccchhhcccCC
Confidence 988655422 233355666667778888888888888888876654 555543 22222333344
Q ss_pred ccccc-cchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHH
Q 004021 153 LEQTI-VGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIG 225 (779)
Q Consensus 153 ~~~~~-vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~ 225 (779)
..+.. ||.+..++++.+.|.++ +..+++|+||||+||||||+.++|+...++.+||.++||+| ..++.+|+
T Consensus 155 ~~~~~~VG~e~~~~kl~~~L~~d--~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 155 IQSESDVGLETMLEKLWNRLMED--DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred CCccccccHHHHHHHHHHHhccC--CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHH
Confidence 43333 99999999999999988 44999999999999999999999999339999999999999 78999999
Q ss_pred HHhCCCcchhhhhcchhhHHHHHHHhhCCCcceeehhh---------ccccccccCCCcEEEEEeCchhhhhh-cC-Cce
Q 004021 226 KRIGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLTE---------LGVPLQMLNAGFKIVLKTRSAGVCDQ-MD-SKN 294 (779)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~---------l~~~~~~~~~gs~IivTTR~~~va~~-~~-~~~ 294 (779)
+.++.. +..+.....++++..+.+.|+++||++++|| ++.++|...+||||++|||+..||.. ++ ...
T Consensus 233 ~~l~~~-~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 233 ERLGLL-DEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HHhccC-CcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 998875 4444555558899999999999999665555 56678888899999999999999999 77 789
Q ss_pred eEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHHHHHHHhcc-cCcCC
Q 004021 295 LEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRERAIEKMRTS-ASTFS 373 (779)
Q Consensus 295 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~-~~~~~ 373 (779)
++++.|+++|||.||++.++.......+.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+.+.+. ..+.+
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999999886566677999999999999999999999999999999999999999999887 55566
Q ss_pred CchHHHHHHHHHHHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCcch-------hhHHHHHHHHHHccccc
Q 004021 374 GMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADF-------DRGCEFINDLLHACLLE 446 (779)
Q Consensus 374 ~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~-------~~~~~~l~~L~~~sll~ 446 (779)
++.+.++.++++||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+. +.|+.|+++|++++|++
T Consensus 392 ~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred chhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 7778999999999999996 999999999999999999999999999999999773 79999999999999999
Q ss_pred ccC----CCcEEechHHHHHHHHHHhhhhhccccEEEEcCcccccCccccccCCccEEEcccccccccccCcc-------
Q 004021 447 EEG----DDHVKMHDMIREMSLWIAWTIEKEKKNFLVRAGVKLTEAPKVKEWEGAKRISLMANEIESLSEIPT------- 515 (779)
Q Consensus 447 ~~~----~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~------- 515 (779)
... ..+|+|||+||++|.+++++.+++++++++..+....+.|....|..+|++++++|.+..++..+.
T Consensus 471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 471 EERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTL 550 (889)
T ss_pred hcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceE
Confidence 873 378999999999999999988887788888887777778888899999999999887644322110
Q ss_pred ------------------------cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcC
Q 004021 516 ------------------------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 516 ------------------------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~ 571 (779)
+|||++|..+.++|.+|++|.|||||+++++.|+.+|.++++|++|.+|++..+..
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 39999998999999999999999999999999999999999999999999999987
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCCcc---cccCC--------------------------------cc--CCCchhh
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEGVT---KEEGN--------------------------------VL--CDDAEPL 614 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~---~~~~~--------------------------------~~--~~~~~~~ 614 (779)
+..+|. ++..|++|++|.+.......-. .++.+ .. .......
T Consensus 631 l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~ 709 (889)
T KOG4658|consen 631 LESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTL 709 (889)
T ss_pred cccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccccee
Confidence 777765 3777999999999866422100 00000 00 0111223
Q ss_pred HHhhcCCCCCCceeEEeeccccc----------cc-CCCCCcc---------cCcccccccCcceEEeccccccceeccc
Q 004021 615 MRELLGLKRLNVLSWSFRSSLAV----------QK-FFKYPKL---------DLTWLVFVQNLKELEIIVCTEMEEIICV 674 (779)
Q Consensus 615 ~~~l~~L~~L~~L~l~~~~~~~~----------~~-~~~L~~L---------~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 674 (779)
+..+..+.+|+.|.+..+..... .. ++++..+ .+.|....|+|+.|.+.+|..++++++.
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 33455666777777776554321 00 2233332 4566677899999999999998888763
Q ss_pred ccccCcccchhhccCCCCCCCCccEE-EccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCccc---ccEEEe
Q 004021 675 DKLRDVSDISEIIGSEHNFFTQLESL-GILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKE---RRVVIE 750 (779)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~---~~l~i~ 750 (779)
........ .....|+++..+ .+.+.+.+.++......+++|+.+.+..||+++.+|......-. ..+...
T Consensus 790 ~k~~~~l~------~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 790 LKALLELK------ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEY 863 (889)
T ss_pred HHHhhhcc------cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeec
Confidence 32211100 123456777777 57777778877777778888999999999999999987554322 223334
Q ss_pred chHhhhhhCcccccchhhhc
Q 004021 751 GLKEWWEELQWEDQATQNAF 770 (779)
Q Consensus 751 ~~~~~~~~l~w~~~~~~~~~ 770 (779)
.+.+|.+.++|+++.++..+
T Consensus 864 ~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 864 PDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred CCccceeeEEehhhhhhhhc
Confidence 66788999999999888766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-55 Score=535.60 Aligned_cols=556 Identities=19% Similarity=0.258 Sum_probs=388.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe---c-------------
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV---Q------------- 218 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v---~------------- 218 (779)
+.+|||++.++++..+|.-+..++++|+||||||+||||||+++|++. ..+|++.+|+.. .
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999999987666689999999999999999999999987 678999888742 0
Q ss_pred -----hHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcceeehhhcccc---------ccccCCCcEEEEEeCch
Q 004021 219 -----TFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLTELGVP---------LQMLNAGFKIVLKTRSA 284 (779)
Q Consensus 219 -----~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~---------~~~~~~gs~IivTTR~~ 284 (779)
.++..++..+..... .... ....+++.++++|+++++|++... ..+.++||+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-----~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-----IKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-----cccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 122223332211100 0011 124577889999999999987532 23457899999999999
Q ss_pred hhhhhcC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHHHHH
Q 004021 285 GVCDQMD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRERAIE 363 (779)
Q Consensus 285 ~va~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~ 363 (779)
+++..++ .+.|+++.|++++||+||+++||... .++.++.+++++|+++|+|+|||++++|++|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998877 78999999999999999999999765 344568899999999999999999999999998 57899999999
Q ss_pred HHhcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCcchhhHHHHHHHHHHcc
Q 004021 364 KMRTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADFDRGCEFINDLLHAC 443 (779)
Q Consensus 364 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~l~~L~~~s 443 (779)
.++... +..+..+|++||+.|+++..|.||+++|+|+.++.++ .+..|++.+.... ...++.|+++|
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----~~~l~~L~~ks 479 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----NIGLKNLVDKS 479 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----hhChHHHHhcC
Confidence 987643 3489999999999998645899999999999887553 4677888765432 23489999999
Q ss_pred cccccCCCcEEechHHHHHHHHHHhhhh--hccccEEEEcCc---------c-------------ccc--C--ccccccC
Q 004021 444 LLEEEGDDHVKMHDMIREMSLWIAWTIE--KEKKNFLVRAGV---------K-------------LTE--A--PKVKEWE 495 (779)
Q Consensus 444 ll~~~~~~~~~mHdlv~~~a~~~~~~~~--~~~~~~~~~~~~---------~-------------~~~--~--~~~~~~~ 495 (779)
|++.. .+++.|||++|+||+++++++. +.++.+++...+ . ..+ + ..+..+.
T Consensus 480 Li~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~ 558 (1153)
T PLN03210 480 LIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR 558 (1153)
T ss_pred CEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc
Confidence 99886 5689999999999999998753 122344432210 0 000 0 0123456
Q ss_pred CccEEEccccccc--------------ccccCcccccccccccccccchhhcccccCceeeecCCcccccchhhccCccC
Q 004021 496 GAKRISLMANEIE--------------SLSEIPTLLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKL 561 (779)
Q Consensus 496 ~lr~l~l~~~~~~--------------~l~~~~~lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L 561 (779)
+++.|.+.++... .+|....+|.+.++ .+..+|..| .+.+|+.|++++|.+..+|.++..+++|
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~L 636 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGL 636 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccCCCC
Confidence 6777766544211 12222235788888 788888777 5788888888888888888888888888
Q ss_pred cEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecc-cccc--
Q 004021 562 RYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSS-LAVQ-- 638 (779)
Q Consensus 562 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~-~~~~-- 638 (779)
+.|+|++|..++.+|. ++.+++|++|++.+|.... ..+..++.|++|+.|+++.+.. ..++
T Consensus 637 k~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~--------------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV--------------ELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred CEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc--------------ccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 8888888877788885 7888888888888876442 3556677778888888775321 1111
Q ss_pred -cCCCCCcccCcc---c----ccccCcceEEeccccccceecccccccCcccchh--------------hccCCCCCCCC
Q 004021 639 -KFFKYPKLDLTW---L----VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISE--------------IIGSEHNFFTQ 696 (779)
Q Consensus 639 -~~~~L~~L~~~~---l----~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 696 (779)
.+++|+.|.+.. + ...++|+.|+|+++. ++.+|..........+.. ..+.....+++
T Consensus 701 i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 122333331110 0 012355556665543 333332110000000000 00001123467
Q ss_pred ccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEechHh
Q 004021 697 LESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGLKE 754 (779)
Q Consensus 697 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~~~ 754 (779)
|+.|+|++|+.+..+|..++.+++|+.|++++|++|+.+|......+++.+.+++|..
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSR 837 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCc
Confidence 8888888877777788777788888888888888888888776555557777777643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-41 Score=353.15 Aligned_cols=268 Identities=29% Similarity=0.567 Sum_probs=221.7
Q ss_pred hhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHHHHhCCCcc
Q 004021 160 QEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIGKRIGFSED 233 (779)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~~~l~~~~~ 233 (779)
||.++++|.+.|.+...+.++|+|+||||+||||||++++++. .++.+|+.++|+.+ ..++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 7899999999999865689999999999999999999999996 56899999999999 5678889999887622
Q ss_pred hhhhhcchhhHHHHHHHhhCCCcceeehhhcccc---------ccccCCCcEEEEEeCchhhhhhcC--CceeEccCCCh
Q 004021 234 KKWKEKSLQDKAVDISSILSPKKFRIDLTELGVP---------LQMLNAGFKIVLKTRSAGVCDQMD--SKNLEVYSLAH 302 (779)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~---------~~~~~~gs~IivTTR~~~va~~~~--~~~~~l~~L~~ 302 (779)
......+.++....+.+.|+++++++++|++... ++....||+||||||+..++..++ ...|++++|++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1114456777899999999999999998887543 344567999999999999988776 57899999999
Q ss_pred HHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHHHHHHHhcccCcCCCchHHHHHH
Q 004021 303 DEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRERAIEKMRTSASTFSGMEENVFLR 382 (779)
Q Consensus 303 ~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~ 382 (779)
+||++||.+.++......++.+++.+++|+++|+|+||||+++|++|+.+.+..+|..+++.+.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876533445667899999999999999999999999776678999999998888765544455799999
Q ss_pred HHHHHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCcch
Q 004021 383 LKFSYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADF 429 (779)
Q Consensus 383 l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~ 429 (779)
+.+||+.||+ ++|.||+|||+||+++.|+++.|+++|+++||+...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 999999999999999999999999999999998763
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=3.9e-18 Score=178.36 Aligned_cols=240 Identities=17% Similarity=0.168 Sum_probs=121.8
Q ss_pred ccccCCccEEEcccccccccccCcc------cccccccccccccchhh-cccccCceeeecCCcccccchhhccCccCcE
Q 004021 491 VKEWEGAKRISLMANEIESLSEIPT------LLSLRRNDSLTELPSRI-SSLVSLHHLDLSLTHIRGLPQELKALEKLRY 563 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~lp~~i-~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~ 563 (779)
+-.+..+..|++++|.++++|.... +|+||+| +|.++|.++ .+|+.|-+|||++|++..+|+.+..|.+|++
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 3344555566666666665554322 3566666 666665543 3556666666666666666666666666666
Q ss_pred eeccCCcCCCCCchhhhcCCccCcEeeeccccCC--CcccccCC--------ccCCCchhhHHhhcCCCCCCceeEEeec
Q 004021 564 LNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSE--GVTKEEGN--------VLCDDAEPLMRELLGLKRLNVLSWSFRS 633 (779)
Q Consensus 564 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~--~~~~~~~~--------~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 633 (779)
|.|++|.. ....-.-+..|++|++|++++..-+ .+|..+.. ...++.+..|+.+-++.+|+.|++++|.
T Consensus 178 L~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 178 LKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 66665531 1000000223344444444443221 12221111 1112223456666677777777777766
Q ss_pred cccc----ccCCCCCcc---------cCcccccccCcceEEecccccc-ceecccc-----------cccCcccchhhcc
Q 004021 634 SLAV----QKFFKYPKL---------DLTWLVFVQNLKELEIIVCTEM-EEIICVD-----------KLRDVSDISEIIG 688 (779)
Q Consensus 634 ~~~~----~~~~~L~~L---------~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~ 688 (779)
.+.+ ....+|++| .|..+..|+.|+.|.+.+|... +.+|+.. .....+..|
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP---- 332 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP---- 332 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc----
Confidence 6544 111222222 1344555566666655554321 1111100 001111222
Q ss_pred CCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCC
Q 004021 689 SEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPI 737 (779)
Q Consensus 689 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~ 737 (779)
..++.+++|+.|.|++ +.|-.+|..+.-+|-|+.|+++.+|+|-.-|.
T Consensus 333 EglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 4666777777777774 66777777777777788888887777765554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=5e-16 Score=189.95 Aligned_cols=242 Identities=20% Similarity=0.224 Sum_probs=133.4
Q ss_pred ccCCccEEEcccccccc-cccC--cc--ccccccccccc-ccchhhcccccCceeeecCCccc-ccchhhccCccCcEee
Q 004021 493 EWEGAKRISLMANEIES-LSEI--PT--LLSLRRNDSLT-ELPSRISSLVSLHHLDLSLTHIR-GLPQELKALEKLRYLN 565 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~-l~~~--~~--lL~L~~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~ 565 (779)
.+.++|+|++++|.+.. +|.. +. .|+|++| .+. .+|..|+++++|++|+|++|.+. .+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 45677777777776643 2221 11 3777777 554 56777778888888888777664 4677777788888888
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccc-----ccccC
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSL-----AVQKF 640 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-----~~~~~ 640 (779)
+++|.....+|.. ++++++|++|++++|.+.+ ..+..++.+++|+.|+++.|... .+..+
T Consensus 195 L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~--------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 195 LASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG--------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred ccCCCCcCcCChH-HcCcCCccEEECcCCccCC--------------cCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 8777555566765 7777788888777776653 23444555555555555544332 12333
Q ss_pred CCCCcc----------cCcccccccCcceEEeccccccceeccccc-ccCcc-------cchhhccCCCCCCCCccEEEc
Q 004021 641 FKYPKL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDK-LRDVS-------DISEIIGSEHNFFTQLESLGI 702 (779)
Q Consensus 641 ~~L~~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~L~~L~l 702 (779)
++|+.| .+.++..+++|+.|+|++|.....++.... ..... .+....+..+..+++|+.|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 344433 123344555566666655543322221000 00000 000000023455666777777
Q ss_pred cCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcc-cccEEEe
Q 004021 703 LYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAK-ERRVVIE 750 (779)
Q Consensus 703 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~-~~~l~i~ 750 (779)
+++.....+|...+.+++|+.|++++|.-...+|..+...+ ++.+.+.
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 66544445555566666777777766654445555443322 2445444
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=1.6e-15 Score=185.74 Aligned_cols=266 Identities=22% Similarity=0.252 Sum_probs=137.8
Q ss_pred cccCccccccCCccEEEcccccccccccCcc------cccccccccccccchhhcccccCceeeecCC-cccccchhhcc
Q 004021 485 LTEAPKVKEWEGAKRISLMANEIESLSEIPT------LLSLRRNDSLTELPSRISSLVSLHHLDLSLT-HIRGLPQELKA 557 (779)
Q Consensus 485 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~~~~ 557 (779)
+..+|......+++.|++.+|.+..++.... .|+|++|..+..+| .++.+++|++|+|++| .+..+|..+++
T Consensus 601 l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 601 LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhc
Confidence 3344443344566667776666666554322 36777664566666 3667777777777776 56677777777
Q ss_pred CccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCC-cccccCC----ccCCCc-hhhHHhhcCCCCCCceeEEe
Q 004021 558 LEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEG-VTKEEGN----VLCDDA-EPLMRELLGLKRLNVLSWSF 631 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~-~~~~~~~----~~~~~~-~~~~~~l~~L~~L~~L~l~~ 631 (779)
|++|+.|++++|..++.+|.+ + ++++|++|++++|.... +|....+ .+.++. ...+.. ..+++|+.|++..
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~ 756 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN-LRLENLDELILCE 756 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc-ccccccccccccc
Confidence 777777777777777777775 3 67777777777764332 1111000 001100 011111 1234444444432
Q ss_pred eccccc------------ccCCCCCcc----------cCcccccccCcceEEeccccccceecccccccCcccchhhccC
Q 004021 632 RSSLAV------------QKFFKYPKL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGS 689 (779)
Q Consensus 632 ~~~~~~------------~~~~~L~~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (779)
+....+ ..+++|+.| .|.+++++++|+.|+|++|+.++.+|.......+..+.-..+.
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCS 836 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCC
Confidence 110000 011233333 1344566777777777777776666542110000000000000
Q ss_pred CC----CCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCccc-ccEEEechHhh
Q 004021 690 EH----NFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKE-RRVVIEGLKEW 755 (779)
Q Consensus 690 ~~----~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~-~~l~i~~~~~~ 755 (779)
.+ ...++|+.|+|++ +.++.+|..+..+++|+.|++++|++|+.+|......+. +.+.+.+|...
T Consensus 837 ~L~~~p~~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 837 RLRTFPDISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ccccccccccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 00 0123444455444 344455555566777777777777777777765544333 66667777554
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.61 E-value=2.2e-15 Score=184.28 Aligned_cols=242 Identities=21% Similarity=0.272 Sum_probs=147.6
Q ss_pred ccCCccEEEcccccccc-cccC----cc--ccccccccccc-ccchhhcccccCceeeecCCccc-ccchhhccCccCcE
Q 004021 493 EWEGAKRISLMANEIES-LSEI----PT--LLSLRRNDSLT-ELPSRISSLVSLHHLDLSLTHIR-GLPQELKALEKLRY 563 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~-l~~~----~~--lL~L~~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~~~~L~~L~~ 563 (779)
.+.++++|++++|.+.. +|.. .. .|+|++| .+. .+|..|+++++|++|+|++|.+. .+|..++++++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 34567777777776642 3321 11 3777777 443 56777777777777777777655 36777777777777
Q ss_pred eeccCCcCCCCCchhhhcCCccCcEeeeccccCCC-cccccCC-------ccCCC--chhhHHhhcCCCCCCceeEEeec
Q 004021 564 LNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEG-VTKEEGN-------VLCDD--AEPLMRELLGLKRLNVLSWSFRS 633 (779)
Q Consensus 564 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~-~~~~~~~-------~~~~~--~~~~~~~l~~L~~L~~L~l~~~~ 633 (779)
|++++|.....+|.. ++++++|++|++++|.+.+ .|..+.+ .+..+ ....+..+..+++|+.|+++.|.
T Consensus 217 L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 777777544466665 6777777777777776553 1111111 00000 01234445556666666665544
Q ss_pred ccc-----cccCCCCCcc----------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCcc
Q 004021 634 SLA-----VQKFFKYPKL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLE 698 (779)
Q Consensus 634 ~~~-----~~~~~~L~~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 698 (779)
... +..+++|+.| .+.++..+++|+.|+|++|.....++ ..++.+++|+
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----------------~~l~~~~~L~ 359 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP----------------KNLGKHNNLT 359 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC----------------hHHhCCCCCc
Confidence 321 1234444444 22334556666666666654433332 3567889999
Q ss_pred EEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCc-ccccEEEech
Q 004021 699 SLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSA-KERRVVIEGL 752 (779)
Q Consensus 699 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~-~~~~l~i~~~ 752 (779)
.|+++++.-...+|.....+++|+.|++.+|+....+|..+... .++.+.+.++
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 99999875555677777788999999999998777788765443 3477777655
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=8.6e-17 Score=168.46 Aligned_cols=215 Identities=21% Similarity=0.226 Sum_probs=159.3
Q ss_pred cccCCccEEEcccccccccccCcc-------cccccccccccccchhhcccccCceeeecCCccc---------------
Q 004021 492 KEWEGAKRISLMANEIESLSEIPT-------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIR--------------- 549 (779)
Q Consensus 492 ~~~~~lr~l~l~~~~~~~l~~~~~-------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~--------------- 549 (779)
...++.-.|++++|+|..+|...+ .||||+| .+..+|+.+..|.+|++|.|++|.+.
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 344577789999999999998765 3899999 99999999999999999999888442
Q ss_pred -----------ccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC--------ccCCC
Q 004021 550 -----------GLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN--------VLCDD 610 (779)
Q Consensus 550 -----------~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~--------~~~~~ 610 (779)
.+|.++..|.+|+.+|++.| .+..+|.- +-++.+|+.|++++|.+.......+. ...+.
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec-ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC-LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHH-HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence 24667778889999999998 78889986 88999999999999988865332221 23333
Q ss_pred chhhHHhhcCCCCCCceeEEeeccc------ccccCCCCCc---------ccCcccccccCcceEEeccccccceecccc
Q 004021 611 AEPLMRELLGLKRLNVLSWSFRSSL------AVQKFFKYPK---------LDLTWLVFVQNLKELEIIVCTEMEEIICVD 675 (779)
Q Consensus 611 ~~~~~~~l~~L~~L~~L~l~~~~~~------~~~~~~~L~~---------L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 675 (779)
....|..+.+|++|+.|.+..|... .++.+.+|+. |.|..+..++.|+.|.|+.|..++ +|
T Consensus 280 Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-LP--- 355 (1255)
T KOG0444|consen 280 LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-LP--- 355 (1255)
T ss_pred hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-ch---
Confidence 4567777888888888887766541 2223333332 356778888899999998865543 33
Q ss_pred cccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEee
Q 004021 676 KLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGV 726 (779)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 726 (779)
..+.-++-|+.|++.++++|.-.|....+-++|+.-+|
T Consensus 356 -------------eaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 356 -------------EAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred -------------hhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 36778999999999999999877764444455554443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=1.1e-15 Score=152.76 Aligned_cols=106 Identities=27% Similarity=0.372 Sum_probs=95.2
Q ss_pred cccccCCccEEEcccccccccccCcc---c--ccccccccccccchhhc-ccccCceeeecCCcccccchhhccCccCcE
Q 004021 490 KVKEWEGAKRISLMANEIESLSEIPT---L--LSLRRNDSLTELPSRIS-SLVSLHHLDLSLTHIRGLPQELKALEKLRY 563 (779)
Q Consensus 490 ~~~~~~~lr~l~l~~~~~~~l~~~~~---l--L~L~~~~~l~~lp~~i~-~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~ 563 (779)
.+..+.++..|+++.|++..+|..+. | |.+..| .++.+|..++ +|.+|.+|||+.|+++++|.+++.|.+|.+
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 45677788888999999999998776 2 788889 9999999987 899999999999999999999999999999
Q ss_pred eeccCCcCCCCCchhhhcCCccCcEeeeccccCCCc
Q 004021 564 LNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGV 599 (779)
Q Consensus 564 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 599 (779)
||+++| .++.+|.+ +|+| .|+.|-+.||.+..+
T Consensus 280 LDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 280 LDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred hcccCC-ccccCCcc-cccc-eeeehhhcCCchHHH
Confidence 999999 78999998 9999 999999999987754
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.1e-16 Score=139.78 Aligned_cols=155 Identities=28% Similarity=0.301 Sum_probs=113.5
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
|.||+| .++.+|+.|..|.+|+.|++.+|+|+++|.+++.|++|++|+++-| .+..+|.+ |+.++-|+.|++.+|++
T Consensus 38 LtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~levldltynnl 114 (264)
T KOG0617|consen 38 LTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhhhhhcccccc
Confidence 677788 8888999999999999999999999999999999999999999988 78899999 99999999999999887
Q ss_pred CCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccccc
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDK 676 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 676 (779)
.+ ...+..+-.++.|+.|.++.|+... .|+.++++++|+.|.+..|..++ +|
T Consensus 115 ~e-------------~~lpgnff~m~tlralyl~dndfe~----------lp~dvg~lt~lqil~lrdndll~-lp---- 166 (264)
T KOG0617|consen 115 NE-------------NSLPGNFFYMTTLRALYLGDNDFEI----------LPPDVGKLTNLQILSLRDNDLLS-LP---- 166 (264)
T ss_pred cc-------------ccCCcchhHHHHHHHHHhcCCCccc----------CChhhhhhcceeEEeeccCchhh-Cc----
Confidence 75 4555566666666666666554321 13445566666666666644332 22
Q ss_pred ccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCC
Q 004021 677 LRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNP 715 (779)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 715 (779)
..++.+..|++|.+.+ +.+.-+|..+
T Consensus 167 ------------keig~lt~lrelhiqg-nrl~vlppel 192 (264)
T KOG0617|consen 167 ------------KEIGDLTRLRELHIQG-NRLTVLPPEL 192 (264)
T ss_pred ------------HHHHHHHHHHHHhccc-ceeeecChhh
Confidence 2445556666666665 4555555543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=3.5e-16 Score=156.29 Aligned_cols=228 Identities=22% Similarity=0.255 Sum_probs=118.9
Q ss_pred ccCCccEEEcccccccccccCcc------cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeec
Q 004021 493 EWEGAKRISLMANEIESLSEIPT------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNL 566 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l 566 (779)
.+..+..+.+++|....+|.... -|+.+.| ++..+|+.++.+.+|+.|+.++|.+.++|++++.+..|..|+.
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 33445555555555554444332 1444444 4444444444444444444444444444444444444444444
Q ss_pred cCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC--------ccCCCchhhHHhhcCCCCCCceeEEeecccccc
Q 004021 567 EYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN--------VLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQ 638 (779)
Q Consensus 567 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 638 (779)
.+| .+..+|++ ++.+.+|..|++.+|.+...|....+ ...+.....|++++.|.+|..|++..|....
T Consensus 145 ~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-- 220 (565)
T KOG0472|consen 145 TNN-QISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-- 220 (565)
T ss_pred ccc-ccccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc--
Confidence 444 34444444 44444444444444443332211110 0001112355666666666666666444322
Q ss_pred cCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCC
Q 004021 639 KFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHF 718 (779)
Q Consensus 639 ~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l 718 (779)
+|.|..+..|+.|+++. +.++.++. .....+++|..|++.+ +++++.|.++.-+
T Consensus 221 ---------lPef~gcs~L~Elh~g~-N~i~~lpa---------------e~~~~L~~l~vLDLRd-Nklke~Pde~clL 274 (565)
T KOG0472|consen 221 ---------LPEFPGCSLLKELHVGE-NQIEMLPA---------------EHLKHLNSLLVLDLRD-NKLKEVPDEICLL 274 (565)
T ss_pred ---------CCCCCccHHHHHHHhcc-cHHHhhHH---------------HHhcccccceeeeccc-cccccCchHHHHh
Confidence 12344455555555554 33444433 2334677778888877 6777777777777
Q ss_pred CCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 719 PKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 719 ~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
.+|++|+++++ .+..+|..+....++.+.+.|.
T Consensus 275 rsL~rLDlSNN-~is~Lp~sLgnlhL~~L~leGN 307 (565)
T KOG0472|consen 275 RSLERLDLSNN-DISSLPYSLGNLHLKFLALEGN 307 (565)
T ss_pred hhhhhhcccCC-ccccCCcccccceeeehhhcCC
Confidence 77888888764 5777777776665566666665
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.46 E-value=2e-14 Score=150.24 Aligned_cols=240 Identities=21% Similarity=0.181 Sum_probs=144.1
Q ss_pred CCccEEEcccccccccccCcc-------cccccccccccccch-hhcccccCceeeecCCccccc-chhhccCccCcEee
Q 004021 495 EGAKRISLMANEIESLSEIPT-------LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLN 565 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~~~-------lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~ 565 (779)
.++++|+|.+|.|..+....+ .|.|+.| .++.+|. .|.+|++|+.|+|..|+|+.. .-.|..|.+|+.|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 467778888877776654332 2778888 8888865 455688888888888877665 44567777777777
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccc-cCC-------ccCCCc--hhhHHhhcCCCCCCceeEEeeccc
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKE-EGN-------VLCDDA--EPLMRELLGLKRLNVLSWSFRSSL 635 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~-~~~-------~~~~~~--~~~~~~l~~L~~L~~L~l~~~~~~ 635 (779)
|..| .+..+.++.|..|.++++|++..|++..+..+ +++ .++.+. ...+....-.++|++|+++.|...
T Consensus 252 lqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 252 LQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 7777 56677777677777777777777766543211 111 000000 112233334455555555555443
Q ss_pred cc-----ccCCCCCcccC----------cccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEE
Q 004021 636 AV-----QKFFKYPKLDL----------TWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESL 700 (779)
Q Consensus 636 ~~-----~~~~~L~~L~~----------~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 700 (779)
.+ ..+..|+.|.+ ..+..+.+|+.|+|+.|..-..+-+ .. ..+.++++|+.|
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED----aa---------~~f~gl~~LrkL 397 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED----AA---------VAFNGLPSLRKL 397 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec----ch---------hhhccchhhhhe
Confidence 32 22333333311 1234567777777777543332211 00 356789999999
Q ss_pred EccCCCCCccccC-CCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEe
Q 004021 701 GILYGPDLKSIYP-NPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIE 750 (779)
Q Consensus 701 ~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~ 750 (779)
.+.+ ++++.++. .+..|++|++|++.+++--.--|..+....++++.+.
T Consensus 398 ~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 398 RLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred eecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 9998 78999987 4557999999999887643333444443344555543
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.44 E-value=3.8e-14 Score=148.13 Aligned_cols=197 Identities=20% Similarity=0.282 Sum_probs=135.5
Q ss_pred ccccCcccccc-CCccEEEcccccccccccCc-----c--cccccccccccccch-hhcccccCceeeecCCcccccch-
Q 004021 484 KLTEAPKVKEW-EGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGLPQ- 553 (779)
Q Consensus 484 ~~~~~~~~~~~-~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~- 553 (779)
.+..+|..... .++..|+|.+|.|..+.... . .||||.| .|.++|. +|..=.++++|+|++|.|+.+-.
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 44556655433 35888888888887764431 1 3899999 8888854 46666789999999999988753
Q ss_pred hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeec
Q 004021 554 ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRS 633 (779)
Q Consensus 554 ~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 633 (779)
.|.+|.+|-+|.|+.| .++.+|..+|.+|++|+.|++..|.+.. ...-.|++|++|+.|.+..|+
T Consensus 192 ~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri--------------ve~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI--------------VEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred cccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee--------------ehhhhhcCchhhhhhhhhhcC
Confidence 4888889999999998 6888988878889999999998887763 122335556666666666555
Q ss_pred cccc-----ccCC----------CCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCcc
Q 004021 634 SLAV-----QKFF----------KYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLE 698 (779)
Q Consensus 634 ~~~~-----~~~~----------~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 698 (779)
+..+ ..+. +++.+.-.|+.+|+.|+.|+|+.| .+..+-. ......++|+
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~---------------d~WsftqkL~ 320 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHI---------------DSWSFTQKLK 320 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeec---------------chhhhcccce
Confidence 5433 2233 334445578888899999999884 3444422 2445567777
Q ss_pred EEEccCCCCCccccC
Q 004021 699 SLGILYGPDLKSIYP 713 (779)
Q Consensus 699 ~L~l~~~~~l~~l~~ 713 (779)
.|+|++ +.+.+++.
T Consensus 321 ~LdLs~-N~i~~l~~ 334 (873)
T KOG4194|consen 321 ELDLSS-NRITRLDE 334 (873)
T ss_pred eEeccc-cccccCCh
Confidence 777776 55666654
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=6.1e-15 Score=130.58 Aligned_cols=172 Identities=22% Similarity=0.284 Sum_probs=141.7
Q ss_pred ccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCc
Q 004021 527 ELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNV 606 (779)
Q Consensus 527 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 606 (779)
.+| .+.++.+...|.|++|+++.+|+.|..|.+|+.|++.+| .++.+|.. ++.|++|++|++.-|++.
T Consensus 25 ~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmnrl~--------- 92 (264)
T KOG0617|consen 25 ELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMNRLN--------- 92 (264)
T ss_pred hcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchhhhh---------
Confidence 344 345678888899999999999999999999999999999 78999998 999999999999988765
Q ss_pred cCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcc-cCcccccccCcceEEeccccccceecccccccCcccchh
Q 004021 607 LCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKL-DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISE 685 (779)
Q Consensus 607 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 685 (779)
..+..+++++.|+.|+++.|.. .+= .|..+..+..|+.|+|+.|. .+.+|
T Consensus 93 ------~lprgfgs~p~levldltynnl---------~e~~lpgnff~m~tlralyl~dnd-fe~lp------------- 143 (264)
T KOG0617|consen 93 ------ILPRGFGSFPALEVLDLTYNNL---------NENSLPGNFFYMTTLRALYLGDND-FEILP------------- 143 (264)
T ss_pred ------cCccccCCCchhhhhhcccccc---------ccccCCcchhHHHHHHHHHhcCCC-cccCC-------------
Confidence 3778899999999999995543 222 24456678889999998854 34444
Q ss_pred hccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCccc
Q 004021 686 IIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKE 744 (779)
Q Consensus 686 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~ 744 (779)
...+.+++|+.|.+.. +.+-++|..++.+..|++|.|.++ .|.-+|..+....+
T Consensus 144 ---~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlppel~~l~l 197 (264)
T KOG0617|consen 144 ---PDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPPELANLDL 197 (264)
T ss_pred ---hhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecChhhhhhhh
Confidence 3778999999999998 577889999999999999999885 69999987765433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=4.7e-12 Score=144.19 Aligned_cols=189 Identities=20% Similarity=0.120 Sum_probs=107.1
Q ss_pred HHHHHHhhhhhccccEEEEcCcccccCccccccCCccEEEcccccccccccCcc---cccccccccccccchhhcccccC
Q 004021 462 MSLWIAWTIEKEKKNFLVRAGVKLTEAPKVKEWEGAKRISLMANEIESLSEIPT---LLSLRRNDSLTELPSRISSLVSL 538 (779)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~---lL~L~~~~~l~~lp~~i~~L~~L 538 (779)
.|....+++.+.+...+......+..+|... ..+++.|++.+|.+..+|..++ .|+|++| .++.+|.. .++|
T Consensus 190 ~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N-~LtsLP~l---p~sL 264 (788)
T PRK15387 190 AVVQKMRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPALPPELRTLEVSGN-QLTSLPVL---PPGL 264 (788)
T ss_pred HHHHHHHHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCCCCCCcEEEecCC-ccCcccCc---cccc
Confidence 4444444444444445544555566666421 2478888888888888776544 4888888 88888753 3577
Q ss_pred ceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC----ccCCCchhh
Q 004021 539 HHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN----VLCDDAEPL 614 (779)
Q Consensus 539 ~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~ 614 (779)
+.|++++|.++.+|... .+|+.|++++| .++.+|.. +++|+.|++++|.+..+|....+ .+.++ .
T Consensus 265 ~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N---~ 333 (788)
T PRK15387 265 LELSIFSNPLTHLPALP---SGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNN---Q 333 (788)
T ss_pred ceeeccCCchhhhhhch---hhcCEEECcCC-cccccccc----ccccceeECCCCccccCCCCcccccccccccC---c
Confidence 78888888777777533 45667777777 56777652 35677777777776664321111 00010 0
Q ss_pred HHhhcCC-CCCCceeEEeecccccccC-CCCCcccCc--ccc----cccCcceEEecccc
Q 004021 615 MRELLGL-KRLNVLSWSFRSSLAVQKF-FKYPKLDLT--WLV----FVQNLKELEIIVCT 666 (779)
Q Consensus 615 ~~~l~~L-~~L~~L~l~~~~~~~~~~~-~~L~~L~~~--~l~----~l~~L~~L~L~~~~ 666 (779)
+..+..+ .+|+.|+++.|....++.. .+|+.|.+. .+. ..++|+.|+|++|.
T Consensus 334 L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~ 393 (788)
T PRK15387 334 LTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR 393 (788)
T ss_pred cccccccccccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCc
Confidence 1111111 3677888887766554321 233333110 011 12367777777653
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=9.2e-12 Score=142.82 Aligned_cols=218 Identities=20% Similarity=0.232 Sum_probs=132.0
Q ss_pred cccccCccccccCCccEEEcccccccccccCcc----cccccccccccccchhhcccccCceeeecCCcccccchhhccC
Q 004021 483 VKLTEAPKVKEWEGAKRISLMANEIESLSEIPT----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKAL 558 (779)
Q Consensus 483 ~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L 558 (779)
..+..+|.. -...++.|++++|.+..+|.... .|+|++| .++.+|..+. .+|+.|+|++|.+..+|..+.
T Consensus 188 ~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 188 LGLTTIPAC-IPEQITTLILDNNELKSLPENLQGNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred CCcCcCCcc-cccCCcEEEecCCCCCcCChhhccCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChhHh--
Confidence 344445531 12468888888888887775422 4888888 7888887654 478888888888888887764
Q ss_pred ccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccc
Q 004021 559 EKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQ 638 (779)
Q Consensus 559 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 638 (779)
.+|+.|++++| .+..+|.. +. .+|++|++++|.+..+|..+. ++|+.|+++.|....++
T Consensus 262 s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~~lp-----------------~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 262 SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTLPAHLP-----------------SGITHLNVQSNSLTALP 320 (754)
T ss_pred CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccCcccch-----------------hhHHHHHhcCCccccCC
Confidence 47888888877 67788875 43 478888888887776442221 12333444433322211
Q ss_pred --cCCCCCccc---------CcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCC
Q 004021 639 --KFFKYPKLD---------LTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPD 707 (779)
Q Consensus 639 --~~~~L~~L~---------~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 707 (779)
..++|+.|. +..+ .++|+.|+|++|+ +..++. .+ .++|+.|+|++| .
T Consensus 321 ~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~----------------~l--p~~L~~LdLs~N-~ 378 (754)
T PRK15370 321 ETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQ-ITVLPE----------------TL--PPTITTLDVSRN-A 378 (754)
T ss_pred ccccccceeccccCCccccCChhh--cCcccEEECCCCC-CCcCCh----------------hh--cCCcCEEECCCC-c
Confidence 011222220 1111 2578888888764 333332 12 367888888874 5
Q ss_pred CccccCCCCCCCCccEEeeeCCCCCCCCCCCCCC-----cccccEEEech
Q 004021 708 LKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSS-----AKERRVVIEGL 752 (779)
Q Consensus 708 l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~-----~~~~~l~i~~~ 752 (779)
+..+|..+. ++|+.|++++| +|..+|..+.. ..+..+.+.+.
T Consensus 379 Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 379 LTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence 677766432 46888888875 57788765432 12245555543
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.25 E-value=7e-13 Score=146.28 Aligned_cols=218 Identities=19% Similarity=0.250 Sum_probs=138.3
Q ss_pred CCccEEEcccccccccccC-----cccccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCC
Q 004021 495 EGAKRISLMANEIESLSEI-----PTLLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYT 569 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~-----~~lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~ 569 (779)
.++++|....|.+..+... ...++++.| .+..+|+.++.+.+|+.|++.+|.+..+|..+...++|+.|.+..|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence 3667777777766543222 125899999 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCCCcccccCCc--------------------cC---------------CCchhh
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNV--------------------LC---------------DDAEPL 614 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~--------------------~~---------------~~~~~~ 614 (779)
.++.+|+. .+++++|++|++..|.+..+|..+... .. ......
T Consensus 298 -el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 298 -ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred -hhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 78999986 788999999999999888765432220 00 001223
Q ss_pred HHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccc-c----------ccCcccc
Q 004021 615 MRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVD-K----------LRDVSDI 683 (779)
Q Consensus 615 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~----------~~~~~~~ 683 (779)
..-|.++.+|+.|+++.|. |.+++-..+.+++.|+.|+|++| .++.++... . ...+..+
T Consensus 376 ~p~l~~~~hLKVLhLsyNr---------L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~f 445 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNR---------LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSF 445 (1081)
T ss_pred hhhhccccceeeeeecccc---------cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeec
Confidence 3345566777777777443 33333344566677777777774 334443200 0 0001111
Q ss_pred hhhccCCCCCCCCccEEEccCCCCCccccCCCCC-CCCccEEeeeCCCC
Q 004021 684 SEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLH-FPKLKKIGVYGCPK 731 (779)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-l~~L~~L~l~~c~~ 731 (779)
..+..++.|+.++++. ++|+.+...... -|+|++|++++++.
T Consensus 446 -----Pe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 446 -----PELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -----hhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 1344556666666653 455544332211 15666666666553
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=4.1e-11 Score=137.51 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=143.5
Q ss_pred CccEEEcccccccccccCcc----cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~ 571 (779)
+...|.+.++.+..+|...+ .|+|++| .++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++| .
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-R 252 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-c
Confidence 45678888888888876322 5999999 9999998775 599999999999999998765 47999999999 6
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccccc--CCCCCcccC-
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQK--FFKYPKLDL- 648 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~--~~~L~~L~~- 648 (779)
+..+|.. +. ++|+.|++++|.+..+| ..+. ++|+.|+++.|....++. .++|+.|.+
T Consensus 253 L~~LP~~-l~--s~L~~L~Ls~N~L~~LP---------------~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls 312 (754)
T PRK15370 253 ITELPER-LP--SALQSLDLFHNKISCLP---------------ENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQ 312 (754)
T ss_pred cCcCChh-Hh--CCCCEEECcCCccCccc---------------cccC--CCCcEEECCCCccccCcccchhhHHHHHhc
Confidence 7899987 54 58999999998877532 2222 478999998876654421 122333310
Q ss_pred ----ccc--ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCcc
Q 004021 649 ----TWL--VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLK 722 (779)
Q Consensus 649 ----~~l--~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 722 (779)
..+ ...++|+.|++++|.. ..++. .+ +++|+.|+++++ ++..+|..+ .++|+
T Consensus 313 ~N~Lt~LP~~l~~sL~~L~Ls~N~L-t~LP~----------------~l--~~sL~~L~Ls~N-~L~~LP~~l--p~~L~ 370 (754)
T PRK15370 313 SNSLTALPETLPPGLKTLEAGENAL-TSLPA----------------SL--PPELQVLDVSKN-QITVLPETL--PPTIT 370 (754)
T ss_pred CCccccCCccccccceeccccCCcc-ccCCh----------------hh--cCcccEEECCCC-CCCcCChhh--cCCcC
Confidence 000 1125677777777543 33332 22 368999999985 677777644 37899
Q ss_pred EEeeeCCCCCCCCCCCCCCcccccEEEec
Q 004021 723 KIGVYGCPKLKKLPINSSSAKERRVVIEG 751 (779)
Q Consensus 723 ~L~l~~c~~L~~lP~~~~~~~~~~l~i~~ 751 (779)
.|+|++| +|..+|..+.. .++.+.+.+
T Consensus 371 ~LdLs~N-~Lt~LP~~l~~-sL~~LdLs~ 397 (754)
T PRK15370 371 TLDVSRN-ALTNLPENLPA-ALQIMQASR 397 (754)
T ss_pred EEECCCC-cCCCCCHhHHH-HHHHHhhcc
Confidence 9999987 58888875432 234455543
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=2.4e-12 Score=129.07 Aligned_cols=96 Identities=22% Similarity=0.283 Sum_probs=68.7
Q ss_pred cccccccccccCcc----cccccccccccccch-hhcccccCceeeecCCccccc-chhhccCccCcEeeccCCcCCCCC
Q 004021 502 LMANEIESLSEIPT----LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHYLSII 575 (779)
Q Consensus 502 l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~l~~l 575 (779)
.++..+.++|...+ .+.|..| .|+.+|+ .|+.+++||.|||++|.|+.+ |..|..|.+|..|-+-+++.++.+
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 33444555544332 5777888 7887754 577888888888888888775 667888888777777775578888
Q ss_pred chhhhcCCccCcEeeeccccCCC
Q 004021 576 PHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 576 p~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
|.+.|++|.+|+.|.+.-|.+..
T Consensus 132 ~k~~F~gL~slqrLllNan~i~C 154 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINC 154 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcc
Confidence 88878888888888777766654
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.18 E-value=1.1e-09 Score=133.71 Aligned_cols=275 Identities=15% Similarity=0.210 Sum_probs=169.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-------chHHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-------QTFQDDIGKR 227 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-------~~i~~~i~~~ 227 (779)
+.+|-|+.-.+.+ ... ...+++.|+|++|.||||++..+.+.. . .++|+++ ..+...++..
T Consensus 14 ~~~~~R~rl~~~l----~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 14 HNTVVRERLLAKL----SGA-NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred cccCcchHHHHHH----hcc-cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHH
Confidence 5567777555544 322 267899999999999999999987543 2 5899999 2344555555
Q ss_pred hCCCcc---hhh-------hhcchhhHHHHHHHhhC--CCcceeehhhccccc------------cccCCCcEEEEEeCc
Q 004021 228 IGFSED---KKW-------KEKSLQDKAVDISSILS--PKKFRIDLTELGVPL------------QMLNAGFKIVLKTRS 283 (779)
Q Consensus 228 l~~~~~---~~~-------~~~~~~~~~~~l~~~L~--~kr~~~~ld~l~~~~------------~~~~~gs~IivTTR~ 283 (779)
+..... ... ...+.......+...+. +.++.+++||+-..- .....+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 531100 000 00122233333433443 567788888863321 122456788899998
Q ss_pred hhhhh--hc--CCceeEcc----CCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCCh
Q 004021 284 AGVCD--QM--DSKNLEVY----SLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKV 355 (779)
Q Consensus 284 ~~va~--~~--~~~~~~l~----~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~ 355 (779)
..-.. .. ......+. +|+.+|+.++|....+..- -.+....|.+.|+|.|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 42111 11 13344555 8999999999987655421 14667899999999999999888776543210
Q ss_pred hHHHHHHHHHhcccCcCCC-chHHHHHHHHH-HHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCcchhhHH
Q 004021 356 GDRERAIEKMRTSASTFSG-MEENVFLRLKF-SYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADFDRGC 433 (779)
Q Consensus 356 ~~w~~~~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~ 433 (779)
. ......+ .+ ....+...+.- .++.||+ ..+..+...|+++ .++.+. .. .+.. .+.+.
T Consensus 236 ~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l-~~-----~l~~-~~~~~ 295 (903)
T PRK04841 236 L--HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDAL-IV-----RVTG-EENGQ 295 (903)
T ss_pred h--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHH-HH-----HHcC-CCcHH
Confidence 0 0101111 11 01245554433 4789999 8999999999986 334332 22 1122 24567
Q ss_pred HHHHHHHHcccccc-c--CCCcEEechHHHHHHHHHH
Q 004021 434 EFINDLLHACLLEE-E--GDDHVKMHDMIREMSLWIA 467 (779)
Q Consensus 434 ~~l~~L~~~sll~~-~--~~~~~~mHdlv~~~a~~~~ 467 (779)
..+++|.+.+++.. . +...|+.|++++++.+...
T Consensus 296 ~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 296 MRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 88999999999653 2 3347999999999998765
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=2.2e-12 Score=135.07 Aligned_cols=186 Identities=22% Similarity=0.229 Sum_probs=118.1
Q ss_pred CccEEEcccccccccccCcc------cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCC
Q 004021 496 GAKRISLMANEIESLSEIPT------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYT 569 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~ 569 (779)
.....+++.|.+.++|.... .+.|+.| .+..+|..+++|..|.||||+.|++..+|..++.|+ |+.|-+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 34456666677766665543 2666777 777777777777777777777777777777777776 777777777
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCc
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLT 649 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~ 649 (779)
+++.+|.+ ++.+..|.+|+.+.|.+.. .+..++.|.+|+.|.+..|. |..| |.
T Consensus 154 -kl~~lp~~-ig~~~tl~~ld~s~nei~s---------------lpsql~~l~slr~l~vrRn~---------l~~l-p~ 206 (722)
T KOG0532|consen 154 -KLTSLPEE-IGLLPTLAHLDVSKNEIQS---------------LPSQLGYLTSLRDLNVRRNH---------LEDL-PE 206 (722)
T ss_pred -ccccCCcc-cccchhHHHhhhhhhhhhh---------------chHHhhhHHHHHHHHHhhhh---------hhhC-CH
Confidence 67777777 7777777777777776543 56667777777777666433 2222 22
Q ss_pred ccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCC---CCCCCccEEee
Q 004021 650 WLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNP---LHFPKLKKIGV 726 (779)
Q Consensus 650 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~---~~l~~L~~L~l 726 (779)
.+..| .|..|++++ +.+..+|. .+..+..|++|.|.+ +-|.+.|..+ |...--++|++
T Consensus 207 El~~L-pLi~lDfSc-Nkis~iPv----------------~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSC-NKISYLPV----------------DFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred HHhCC-ceeeeeccc-Cceeecch----------------hhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecc
Confidence 23323 366666665 44444543 556677777777776 3456655432 23333466666
Q ss_pred eCC
Q 004021 727 YGC 729 (779)
Q Consensus 727 ~~c 729 (779)
.-|
T Consensus 268 qA~ 270 (722)
T KOG0532|consen 268 QAC 270 (722)
T ss_pred hhc
Confidence 666
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=1.4e-10 Score=132.37 Aligned_cols=192 Identities=20% Similarity=0.187 Sum_probs=104.0
Q ss_pred CCccEEEcccccccccccCcc---cccccccccccccchhhc-----------------ccccCceeeecCCcccccchh
Q 004021 495 EGAKRISLMANEIESLSEIPT---LLSLRRNDSLTELPSRIS-----------------SLVSLHHLDLSLTHIRGLPQE 554 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~~~---lL~L~~~~~l~~lp~~i~-----------------~L~~L~~L~L~~~~i~~lp~~ 554 (779)
.+++.|++++|.++.+|..+. -|+|++| .+..+|.... .+++|++|++++|.++.+|..
T Consensus 242 ~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N-~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~l 320 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSN-PLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL 320 (788)
T ss_pred CCCcEEEecCCccCcccCcccccceeeccCC-chhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCC
Confidence 466677777776666654332 2455555 4444443211 124455555555555555432
Q ss_pred hccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC----ccCCCchhhHHhhcCCCCCCceeEE
Q 004021 555 LKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN----VLCDDAEPLMRELLGLKRLNVLSWS 630 (779)
Q Consensus 555 ~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~~L~~L~l~ 630 (779)
. .+|+.|++++| .++.+|. + ..+|++|++++|.+..+|....+ .+.++....+.. ...+|+.|+++
T Consensus 321 p---~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs 390 (788)
T PRK15387 321 P---SELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA--LPSGLKELIVS 390 (788)
T ss_pred c---ccccccccccC-ccccccc--c--ccccceEecCCCccCCCCCCCcccceehhhccccccCcc--cccccceEEec
Confidence 2 23444455555 3444443 1 13677788877777664421111 000000000000 11345555555
Q ss_pred eecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcc
Q 004021 631 FRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKS 710 (779)
Q Consensus 631 ~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 710 (779)
.|... .+ +. ..++|+.|++++|. +..+|. .+.+|+.|++++ +.++.
T Consensus 391 ~N~Lt---------~L--P~--l~s~L~~LdLS~N~-LssIP~-------------------l~~~L~~L~Ls~-NqLt~ 436 (788)
T PRK15387 391 GNRLT---------SL--PV--LPSELKELMVSGNR-LTSLPM-------------------LPSGLLSLSVYR-NQLTR 436 (788)
T ss_pred CCccc---------CC--CC--cccCCCEEEccCCc-CCCCCc-------------------chhhhhhhhhcc-Ccccc
Confidence 43322 11 11 13579999999965 444432 135788899987 67889
Q ss_pred ccCCCCCCCCccEEeeeCCCC
Q 004021 711 IYPNPLHFPKLKKIGVYGCPK 731 (779)
Q Consensus 711 l~~~~~~l~~L~~L~l~~c~~ 731 (779)
+|..++.+++|+.|++++|+-
T Consensus 437 LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cChHHhhccCCCeEECCCCCC
Confidence 998888999999999998864
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.09 E-value=9.9e-12 Score=137.39 Aligned_cols=96 Identities=29% Similarity=0.413 Sum_probs=75.3
Q ss_pred CccEEEcccccccccccCcc------cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCC
Q 004021 496 GAKRISLMANEIESLSEIPT------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYT 569 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~ 569 (779)
++++|++++|.+..+|.... -|+++.| .+..+|.+++++.+|++|+|.+|.+..+|.++..+++|++|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 47788888888877776544 2788888 8888888888888888888888888888888888888888888888
Q ss_pred cCCCCCchhhhcCCccCcEeeeccc
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
....+|.- +..++.+..+..++|
T Consensus 125 -~f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 125 -HFGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred -ccCCCchh-HHhhhHHHHHhhhcc
Confidence 45677774 677777777777766
No 24
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.02 E-value=9.7e-09 Score=108.01 Aligned_cols=270 Identities=16% Similarity=0.103 Sum_probs=147.2
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe---chHHHHHHHHh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV---QTFQDDIGKRI 228 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v---~~i~~~i~~~l 228 (779)
..|+|+++.++++..++... ......+.++|++|+|||+||+.+++.. ...+.. ..... ...+...+..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~-~~~~~~~~~~~l~~~l~~~ 79 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKI-TSGPALEKPGDLAAILTNL 79 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEE-eccchhcCchhHHHHHHhc
Confidence 46899999999999888642 2245668899999999999999999887 222211 11111 11222223333
Q ss_pred CCCcc---hhhhhcchhhHHHHHHHhhCCCcceeehhhccccc---cccCCCcEEEEEeCchhhhhhcC---CceeEccC
Q 004021 229 GFSED---KKWKEKSLQDKAVDISSILSPKKFRIDLTELGVPL---QMLNAGFKIVLKTRSAGVCDQMD---SKNLEVYS 299 (779)
Q Consensus 229 ~~~~~---~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~~---~~~~~gs~IivTTR~~~va~~~~---~~~~~l~~ 299 (779)
+...- +.....+ ......+...+.+.+..++++.-..+- ....+.+-|..||+...+..... ...+.+++
T Consensus 80 ~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~ 158 (305)
T TIGR00635 80 EEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEF 158 (305)
T ss_pred ccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCC
Confidence 22100 0000011 122344566666655544443321110 01123556667777655543321 35679999
Q ss_pred CChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHHHHHHHhcccCcCCCchHHH
Q 004021 300 LAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRERAIEKMRTSASTFSGMEENV 379 (779)
Q Consensus 300 L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i 379 (779)
++.++..+++.+.+....... -++....|++.|+|.|-.+..++..+ |... ......... ...-...
T Consensus 159 l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a-~~~~~~~it-~~~v~~~ 225 (305)
T TIGR00635 159 YTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFA-QVRGQKIIN-RDIALKA 225 (305)
T ss_pred CCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHH-HHcCCCCcC-HHHHHHH
Confidence 999999999998887544222 25677899999999997665554432 1100 000000000 0000122
Q ss_pred HHHHHHHHhcCCccchhhhhh-hccccCCCcccChHHHHHHHHHcCCCcchhhHHHHHH-HHHHcccccccC
Q 004021 380 FLRLKFSYDSLSMDKLRSCLL-YCCLYPEDYKIPKRSLIDYWISEGFMADFDRGCEFIN-DLLHACLLEEEG 449 (779)
Q Consensus 380 ~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~l~-~L~~~sll~~~~ 449 (779)
...+...|..+++ +.+..+. ..+.++.+ .+....+.. -+=.+...++..++ .|++++|+....
T Consensus 226 l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~-----~lg~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 226 LEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAA-----ALGEDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred HHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHH-----HhCCCcchHHHhhhHHHHHcCCcccCC
Confidence 2234556777776 5555555 44555433 444433322 12122256777788 699999997653
No 25
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.01 E-value=4.7e-09 Score=111.09 Aligned_cols=270 Identities=15% Similarity=0.072 Sum_probs=148.8
Q ss_pred ccccchhhhHHHHHHHHhc---cCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEE--EEEechHHHHHHHHhC
Q 004021 155 QTIVGQEKLLPRVWRCITD---QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVI--WAAVQTFQDDIGKRIG 229 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~--wv~v~~i~~~i~~~l~ 229 (779)
.+|+|+++.++.+..++.. .......+.|+|++|+|||+||+.+++.. . ..+.... ++.....+..++..+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~~~~~~~~~~~~~~l~~~l~~l~ 101 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNIRITSGPALEKPGDLAAILTNLE 101 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCeEEEecccccChHHHHHHHHhcc
Confidence 5689999999999888764 23345678899999999999999999987 2 2221100 0111222333444433
Q ss_pred CCcc---hhhhhcchhhHHHHHHHhhCCCcceeehhhcccccc---ccCCCcEEEEEeCchhhhhhcC---CceeEccCC
Q 004021 230 FSED---KKWKEKSLQDKAVDISSILSPKKFRIDLTELGVPLQ---MLNAGFKIVLKTRSAGVCDQMD---SKNLEVYSL 300 (779)
Q Consensus 230 ~~~~---~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~~~---~~~~gs~IivTTR~~~va~~~~---~~~~~l~~L 300 (779)
...- +..+..+ ......+...+.+.+....+++-..+-. .-.+.+-|..|||...+..... ...+.++++
T Consensus 102 ~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~ 180 (328)
T PRK00080 102 EGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFY 180 (328)
T ss_pred cCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCC
Confidence 2100 0000000 1122334555555554444433211100 0112455666777655443322 356899999
Q ss_pred ChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHHHHHHHhcccCcCCCchHHHH
Q 004021 301 AHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRERAIEKMRTSASTFSGMEENVF 380 (779)
Q Consensus 301 ~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~ 380 (779)
+.++..+++.+.+.......+ ++....|++.|+|.|-.+..+...+. .|.... ...... ...-....
T Consensus 181 ~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~-~~~v~~~l 247 (328)
T PRK00080 181 TVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT-KEIADKAL 247 (328)
T ss_pred CHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC-HHHHHHHH
Confidence 999999999998876543322 56789999999999965554443221 121100 000000 00011333
Q ss_pred HHHHHHHhcCCccchhhhhh-hccccCCCcccChHHHHHHHHHcCCCcchhhHHHHHH-HHHHccccccc
Q 004021 381 LRLKFSYDSLSMDKLRSCLL-YCCLYPEDYKIPKRSLIDYWISEGFMADFDRGCEFIN-DLLHACLLEEE 448 (779)
Q Consensus 381 ~~l~~sy~~L~~~~~k~cf~-~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~l~-~L~~~sll~~~ 448 (779)
..+...+..|++ ..+..+. ....|+.+ .+..+.+... +-.+...+++.++ .|++.+|++..
T Consensus 248 ~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~-----lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 248 DMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAA-----LGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHH-----HCCCcchHHHHhhHHHHHcCCcccC
Confidence 445556677776 5555554 55666655 4555544322 2122256666777 89999999865
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=6.4e-11 Score=124.31 Aligned_cols=187 Identities=23% Similarity=0.278 Sum_probs=139.1
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
.||+.| .+.++|..++.+..|..|.|..|.+..+|..+++|..|.+|||+.| .+..+|.+ +..|+ |+.|.+++|++
T Consensus 80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~-lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDG-LCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChh-hhcCc-ceeEEEecCcc
Confidence 788888 8888888888888888888888888888888889988999999888 67888887 66654 88888888877
Q ss_pred CCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccccc
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDK 676 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 676 (779)
.. .+.+++.+..|..|+.+.| ++++| ++.++.+.+|+.|.+..|+. ..+|.
T Consensus 156 ~~---------------lp~~ig~~~tl~~ld~s~n---------ei~sl-psql~~l~slr~l~vrRn~l-~~lp~--- 206 (722)
T KOG0532|consen 156 TS---------------LPEEIGLLPTLAHLDVSKN---------EIQSL-PSQLGYLTSLRDLNVRRNHL-EDLPE--- 206 (722)
T ss_pred cc---------------CCcccccchhHHHhhhhhh---------hhhhc-hHHhhhHHHHHHHHHhhhhh-hhCCH---
Confidence 64 5556666777788888744 34444 55677788888888888554 33433
Q ss_pred ccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCccc----ccEEEech
Q 004021 677 LRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKE----RRVVIEGL 752 (779)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~----~~l~i~~~ 752 (779)
.+..+ .|..|++++ +++..+|..+..|..|++|.+.++| |++=|..+...-. +.|.++.|
T Consensus 207 -------------El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 207 -------------ELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -------------HHhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 34444 378888884 7888888888888889998888776 7776655432211 55566555
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.88 E-value=4.5e-07 Score=99.19 Aligned_cols=279 Identities=15% Similarity=0.172 Sum_probs=155.3
Q ss_pred cccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHH
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIG 225 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~ 225 (779)
++.++||++++++|...+.+. ......+.|+|.+|+|||++++.++++. ......-..++++. ..++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 367899999999999998553 2344567899999999999999999987 22221223444444 35777888
Q ss_pred HHhCCCcchhhhhcchhhHHHHHHHhhCC--Ccceeehhhccccc------------c--ccCCCcE--EEEEeCchhhh
Q 004021 226 KRIGFSEDKKWKEKSLQDKAVDISSILSP--KKFRIDLTELGVPL------------Q--MLNAGFK--IVLKTRSAGVC 287 (779)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~~~~ld~l~~~~------------~--~~~~gs~--IivTTR~~~va 287 (779)
.++..... .....+..+....+.+.++. +...+.+|++.... . ....+++ +|.+++...+.
T Consensus 108 ~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPP-PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCC-CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 88764211 01223445666677777753 33455555542211 0 1113334 66676654433
Q ss_pred hh--------cCCceeEccCCChHHHHHHHHHHhhcc---CCCCCCChHHHHHHHHHHhCCChhHHHHHHHHh--c--CC
Q 004021 288 DQ--------MDSKNLEVYSLAHDEAWKLFQEMIERS---TLDSHTSIPELAETLARECGRLPLALKTVGRAM--K--SQ 352 (779)
Q Consensus 288 ~~--------~~~~~~~l~~L~~~~a~~Lf~~~a~~~---~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l--~--~~ 352 (779)
.. .+...+.+++++.++..+++..++... ..-.+..++.+++......|..+.|+.++-... + ..
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 22 123567899999999999999887432 111111222233333333466777877654321 1 11
Q ss_pred ---CChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhcccc-CC-CcccChHHHHHH--HHH--c
Q 004021 353 ---KKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLY-PE-DYKIPKRSLIDY--WIS--E 423 (779)
Q Consensus 353 ---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f-p~-~~~i~~~~Li~~--W~a--~ 423 (779)
-+.+....+.+... .....-.+..||. +.|..+..++.. .. ...+....+... .++ .
T Consensus 267 ~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 13444444443321 1223446788987 555544433322 11 133455554432 122 2
Q ss_pred CCCc-chhhHHHHHHHHHHccccccc
Q 004021 424 GFMA-DFDRGCEFINDLLHACLLEEE 448 (779)
Q Consensus 424 g~~~-~~~~~~~~l~~L~~~sll~~~ 448 (779)
|.-. ......+++..|...+++...
T Consensus 333 ~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 GYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 3221 114566788899999998753
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.85 E-value=4.7e-10 Score=112.92 Aligned_cols=101 Identities=25% Similarity=0.317 Sum_probs=59.1
Q ss_pred CccEEEcccccccccccCcc-------ccccccccccccc-chhhcccccCceeeecC-Ccccccchh-hccCccCcEee
Q 004021 496 GAKRISLMANEIESLSEIPT-------LLSLRRNDSLTEL-PSRISSLVSLHHLDLSL-THIRGLPQE-LKALEKLRYLN 565 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~-------lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~-~~i~~lp~~-~~~L~~L~~L~ 565 (779)
....|.|..|.|+.+|...+ -||||+| .|+.+ |..|.+|..|-.|-+.+ |+|+.+|+. |++|..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 34455566666666665433 2666666 66655 66666666665555544 566666654 56666666666
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCCC
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
+.-| .+.-++.+.+..|++|..|.++.|.+..
T Consensus 147 lNan-~i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 147 LNAN-HINCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred cChh-hhcchhHHHHHHhhhcchhcccchhhhh
Confidence 6555 4555555556666666666666655443
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=1.7e-09 Score=126.27 Aligned_cols=137 Identities=29% Similarity=0.299 Sum_probs=95.9
Q ss_pred hcccccCceeeecCC-cccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC-----
Q 004021 532 ISSLVSLHHLDLSLT-HIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN----- 605 (779)
Q Consensus 532 i~~L~~L~~L~L~~~-~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~----- 605 (779)
|..|++|++|||++| .+.++|..|++|-+||+|+++++ .+..+|.+ +++|.+|.+|++..+.....+.++..
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH-HHHHHhhheeccccccccccccchhhhcccc
Confidence 677999999999988 78999999999999999999999 78999998 99999999999998765432211111
Q ss_pred -------ccCCCchhhHHhhcCCCCCCceeEEeecc---cccccCCCCCcc-------------cCcccccccCcceEEe
Q 004021 606 -------VLCDDAEPLMRELLGLKRLNVLSWSFRSS---LAVQKFFKYPKL-------------DLTWLVFVQNLKELEI 662 (779)
Q Consensus 606 -------~~~~~~~~~~~~l~~L~~L~~L~l~~~~~---~~~~~~~~L~~L-------------~~~~l~~l~~L~~L~L 662 (779)
...........++..|++|+.|++..... ..+..+..|.++ .++.+..+.+|+.|.+
T Consensus 645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i 724 (889)
T KOG4658|consen 645 RVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSI 724 (889)
T ss_pred cEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEE
Confidence 11122345566677777777777754443 111111111111 2345677889999999
Q ss_pred ccccccce
Q 004021 663 IVCTEMEE 670 (779)
Q Consensus 663 ~~~~~~~~ 670 (779)
.+|...+.
T Consensus 725 ~~~~~~e~ 732 (889)
T KOG4658|consen 725 LDCGISEI 732 (889)
T ss_pred EcCCCchh
Confidence 98877543
No 30
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.79 E-value=5.5e-07 Score=92.92 Aligned_cols=165 Identities=14% Similarity=0.177 Sum_probs=100.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-----chHHHHHHHHhCCCcchhhhhcchhhHHHHHHHh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-----QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSI 251 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-----~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 251 (779)
...++.|+|.+|+|||||++.+++.. .. ..+ ..+|+.. .+++..|+..++.+.. ..+.......+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~----~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKLVNTRVDAEDLLRMVAADFGLETE----GRDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeeeeCCCCCHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHH
Confidence 34689999999999999999999886 21 221 2233332 5677788888776522 11222222333322
Q ss_pred -----hCCCcceeehhhcccc----------ccc----cCCCcEEEEEeCchhhhhh--------cC---CceeEccCCC
Q 004021 252 -----LSPKKFRIDLTELGVP----------LQM----LNAGFKIVLKTRSAGVCDQ--------MD---SKNLEVYSLA 301 (779)
Q Consensus 252 -----L~~kr~~~~ld~l~~~----------~~~----~~~gs~IivTTR~~~va~~--------~~---~~~~~l~~L~ 301 (779)
..+++..+.+|++... +.. ......|++|.... .... .. ...+++++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2566766666664221 111 11223445555432 2111 11 3457899999
Q ss_pred hHHHHHHHHHHhhccCCCCC-CChHHHHHHHHHHhCCChhHHHHHHHHh
Q 004021 302 HDEAWKLFQEMIERSTLDSH-TSIPELAETLARECGRLPLALKTVGRAM 349 (779)
Q Consensus 302 ~~~a~~Lf~~~a~~~~~~~~-~~l~~~~~~I~~~c~glPLai~~~g~~l 349 (779)
.+|..+++...+........ .--.+..+.|++.|+|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999887754432111 2235789999999999999999888765
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=1.7e-09 Score=101.17 Aligned_cols=63 Identities=30% Similarity=0.315 Sum_probs=21.9
Q ss_pred ccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCC
Q 004021 534 SLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 534 ~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
.|.+|+.|+|++|.|+.++ .+..|++|++|++++| .++.++.++...+++|++|++++|.+..
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCCcCCC
Confidence 4566667777777666664 4666667777777766 5666655422356667777776666553
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1e-08 Score=96.05 Aligned_cols=107 Identities=26% Similarity=0.333 Sum_probs=41.1
Q ss_pred ccccccCCccEEEcccccccccccCc----c--cccccccccccccchhhcccccCceeeecCCcccccchhh-ccCccC
Q 004021 489 PKVKEWEGAKRISLMANEIESLSEIP----T--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQEL-KALEKL 561 (779)
Q Consensus 489 ~~~~~~~~lr~l~l~~~~~~~l~~~~----~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~-~~L~~L 561 (779)
+......++|.|++.+|.|..+.... . .|+|++| .|..++ .+..|++|++|++++|.|+.++..+ ..+++|
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 33334457899999999988765432 1 4999999 999886 6888999999999999999997766 479999
Q ss_pred cEeeccCCcCCCCCch-hhhcCCccCcEeeeccccCCC
Q 004021 562 RYLNLEYTHYLSIIPH-QLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 562 ~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 598 (779)
++|++++| .+..+.. ..+..+++|++|++.+|.+..
T Consensus 91 ~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 91 QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 99999999 5554432 126789999999999998763
No 33
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.70 E-value=2e-07 Score=94.04 Aligned_cols=181 Identities=21% Similarity=0.250 Sum_probs=94.3
Q ss_pred ccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-----chHHHHH-------
Q 004021 157 IVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-----QTFQDDI------- 224 (779)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-----~~i~~~i------- 224 (779)
|+||++++++|.+++..+ ..+.+.|+|..|+|||+|++.+.+.. . ...+ .++|+.. ......+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhHHHHHHHHHHHH
Confidence 799999999999999876 56889999999999999999999876 2 1112 2333333 1111111
Q ss_pred -------HHHhCCCcch---hhhhcchhhHHHHHHHhhC--CCcceeehhhccccc-----------------cc--cCC
Q 004021 225 -------GKRIGFSEDK---KWKEKSLQDKAVDISSILS--PKKFRIDLTELGVPL-----------------QM--LNA 273 (779)
Q Consensus 225 -------~~~l~~~~~~---~~~~~~~~~~~~~l~~~L~--~kr~~~~ld~l~~~~-----------------~~--~~~ 273 (779)
...+...... .............+.+.+. +++..+++|++.... .. ...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 1111110000 0001122233344444443 234666666653322 00 123
Q ss_pred CcEEEEEeCchhhhhh--------cC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 274 GFKIVLKTRSAGVCDQ--------MD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 274 gs~IivTTR~~~va~~--------~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
.-.+|+++-...+... .+ ...+.+++|+.+++++++...+... ... +.-.+..++|...+||.|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3344555544444332 22 3458999999999999999976544 121 12256679999999999988754
No 34
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.68 E-value=7.4e-06 Score=88.65 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=152.3
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCC---CEEEEEEe------chHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNF---DVVIWAAV------QTFQDD 223 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F---~~~~wv~v------~~i~~~ 223 (779)
+.++||++++++|...|... ......+.|+|++|+|||++++.+++......... -..+|+.. ..++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 57899999999999998752 22456789999999999999999998762111111 13455554 457777
Q ss_pred HHHHhC---CCcchhhhhcchhhHHHHHHHhhC--CCcceeehhhccccc-----------c----ccC--CCcEEEEEe
Q 004021 224 IGKRIG---FSEDKKWKEKSLQDKAVDISSILS--PKKFRIDLTELGVPL-----------Q----MLN--AGFKIVLKT 281 (779)
Q Consensus 224 i~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~--~kr~~~~ld~l~~~~-----------~----~~~--~gs~IivTT 281 (779)
|+.++. .. . .....+..+....+.+.+. ++++.+++|++.... . ... ....+|.+|
T Consensus 95 i~~~l~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 95 LANQLRGSGEE-V-PTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHhhcCCC-C-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 888773 21 1 0112233445555666653 344555555542210 0 011 223455566
Q ss_pred Cchhhhhhc--------CCceeEccCCChHHHHHHHHHHhhcc--CCCCCCChHHHHHHHHHHhCCChhHH-HHHHHH--
Q 004021 282 RSAGVCDQM--------DSKNLEVYSLAHDEAWKLFQEMIERS--TLDSHTSIPELAETLARECGRLPLAL-KTVGRA-- 348 (779)
Q Consensus 282 R~~~va~~~--------~~~~~~l~~L~~~~a~~Lf~~~a~~~--~~~~~~~l~~~~~~I~~~c~glPLai-~~~g~~-- 348 (779)
+.......+ ....+.+++.+.++..+++..++... ....+++..+....++..+.|-|-.+ .++-..
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 544332111 12468999999999999999887421 11122233344555677777877443 332111
Q ss_pred hc--CC---CChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhcccc--CCCcccChHHHHHHHH
Q 004021 349 MK--SQ---KKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLY--PEDYKIPKRSLIDYWI 421 (779)
Q Consensus 349 l~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f--p~~~~i~~~~Li~~W~ 421 (779)
+. .+ -+.+....+.+.+. .....-++..||. +.+..+..+... ..+..+...++...+.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 11 11 22333333333221 1223446678887 666554444321 1334466666655331
Q ss_pred --HcCC-Ccch--hhHHHHHHHHHHccccccc
Q 004021 422 --SEGF-MADF--DRGCEFINDLLHACLLEEE 448 (779)
Q Consensus 422 --a~g~-~~~~--~~~~~~l~~L~~~sll~~~ 448 (779)
++.+ +.+. ....+++..|...|++...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2211 1111 5677788889999998764
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=7.3e-09 Score=100.53 Aligned_cols=123 Identities=21% Similarity=0.190 Sum_probs=67.2
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
+|||+| .|+.+-+++.-++.++.|++++|+|..+-. +..|++|++|||++| .+..+... -.+|-|.++|.+.+|.+
T Consensus 289 lDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gw-h~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 289 LDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGW-HLKLGNIKTLKLAQNKI 364 (490)
T ss_pred cccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhh-HhhhcCEeeeehhhhhH
Confidence 566666 666666565556666666666666655543 555666666666666 44444432 34555666666665543
Q ss_pred CCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccc
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTE 667 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~ 667 (779)
. .+..|++|-+|..|+++.|.+..+. ....++++|.|++|.|.+|+.
T Consensus 365 E----------------~LSGL~KLYSLvnLDl~~N~Ie~ld--------eV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 365 E----------------TLSGLRKLYSLVNLDLSSNQIEELD--------EVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred h----------------hhhhhHhhhhheeccccccchhhHH--------HhcccccccHHHHHhhcCCCc
Confidence 3 3444555556666666644432211 123455666666666666443
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.61 E-value=2e-06 Score=95.99 Aligned_cols=278 Identities=17% Similarity=0.186 Sum_probs=172.2
Q ss_pred cccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-------chHHHHHHHHh
Q 004021 156 TIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-------QTFQDDIGKRI 228 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-------~~i~~~i~~~l 228 (779)
..|-|. ++++.|... .+.+++.|..++|.|||||+.+..... ..=..+.|.+. ..+...++..+
T Consensus 20 ~~v~R~----rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 20 NYVVRP----RLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccH----HHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 345554 455555543 267999999999999999999997633 33456899999 34555555555
Q ss_pred CCC--c-chh-------hhhcchhhHHHHHHHhhCC--Ccceeehhhc---ccc---------ccccCCCcEEEEEeCch
Q 004021 229 GFS--E-DKK-------WKEKSLQDKAVDISSILSP--KKFRIDLTEL---GVP---------LQMLNAGFKIVLKTRSA 284 (779)
Q Consensus 229 ~~~--~-~~~-------~~~~~~~~~~~~l~~~L~~--kr~~~~ld~l---~~~---------~~~~~~gs~IivTTR~~ 284 (779)
+.. . ++. ....+.....+.+..-+.. ++..+++||. ..+ +.....+-..|||||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 421 0 100 0122233344444443332 3557777774 222 12335688999999985
Q ss_pred hhhhhcC----CceeEcc----CCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChh
Q 004021 285 GVCDQMD----SKNLEVY----SLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVG 356 (779)
Q Consensus 285 ~va~~~~----~~~~~l~----~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~ 356 (779)
--..... ...++++ .++.+|+-++|....+..- -..-.+.+.+...|-+-|+..++=.++.+.+..
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 4322111 3333443 3789999999987653321 145578999999999999999887777433332
Q ss_pred HHHHHHHHHhcccCcCCCchHHHHHHH-HHHHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCcchhhHHHH
Q 004021 357 DRERAIEKMRTSASTFSGMEENVFLRL-KFSYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADFDRGCEF 435 (779)
Q Consensus 357 ~w~~~~~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~ 435 (779)
.-... ..+..+.+..-| .=-++.||+ ++|..++.||+++.= -..|+..-..+ +.+...
T Consensus 245 q~~~~----------LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~Ltg~------~ng~am 303 (894)
T COG2909 245 QSLRG----------LSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNALTGE------ENGQAM 303 (894)
T ss_pred HHhhh----------ccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHHhcC------CcHHHH
Confidence 22211 111222332222 234788999 899999999998532 12333321111 567888
Q ss_pred HHHHHHccccccc---CCCcEEechHHHHHHHHHHhh
Q 004021 436 INDLLHACLLEEE---GDDHVKMHDMIREMSLWIAWT 469 (779)
Q Consensus 436 l~~L~~~sll~~~---~~~~~~mHdlv~~~a~~~~~~ 469 (779)
+++|.+++|+-.. ....|+.|.++.||.+.-...
T Consensus 304 Le~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 304 LEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9999999987654 677899999999999865543
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=1.8e-08 Score=106.91 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=6.7
Q ss_pred cccCcceEEeccc
Q 004021 653 FVQNLKELEIIVC 665 (779)
Q Consensus 653 ~l~~L~~L~L~~~ 665 (779)
.+++|++|++++|
T Consensus 219 ~~~~L~~L~ls~n 231 (319)
T cd00116 219 SLKSLEVLNLGDN 231 (319)
T ss_pred ccCCCCEEecCCC
Confidence 3445555555554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=3.8e-08 Score=107.70 Aligned_cols=79 Identities=34% Similarity=0.501 Sum_probs=52.4
Q ss_pred ccccccccccccchhhcccc-cCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 517 LSLRRNDSLTELPSRISSLV-SLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
|++.+| .+..+|..++.+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|.. .+.+++|+.|++++|.
T Consensus 121 L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 121 LDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSNLNNLDLSGNK 197 (394)
T ss_pred EecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhhhhheeccCCc
Confidence 566666 6666666666664 677777777777777666677777777777776 56666664 4466677777777666
Q ss_pred CCC
Q 004021 596 SEG 598 (779)
Q Consensus 596 ~~~ 598 (779)
+..
T Consensus 198 i~~ 200 (394)
T COG4886 198 ISD 200 (394)
T ss_pred ccc
Confidence 554
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=6.8e-09 Score=100.77 Aligned_cols=127 Identities=19% Similarity=0.195 Sum_probs=107.7
Q ss_pred ccccCCccEEEcccccccccccCcc------cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEe
Q 004021 491 VKEWEGAKRISLMANEIESLSEIPT------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYL 564 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L 564 (779)
...|+.+..+++++|.|+.+..... .|++|.| .+..+-. +..|.+|+.|||++|.++++-..=.+|.|.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 4579999999999999988776644 4999999 8887764 889999999999999888876656688899999
Q ss_pred eccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccc
Q 004021 565 NLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSL 635 (779)
Q Consensus 565 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 635 (779)
.|++| .++.+.. +++|.+|..|++.+|++.. -.....+++|+.|+.+.+.+|...
T Consensus 358 ~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~-------------ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQN-KIETLSG--LRKLYSLVNLDLSSNQIEE-------------LDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhh-hHhhhhh--hHhhhhheeccccccchhh-------------HHHhcccccccHHHHHhhcCCCcc
Confidence 99999 7888876 8999999999999998875 345667889999999999877654
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.51 E-value=2.6e-08 Score=105.72 Aligned_cols=205 Identities=20% Similarity=0.133 Sum_probs=124.3
Q ss_pred CCccEEEcccccccc-----ccc----Ccc--ccccccccccc-------ccchhhcccccCceeeecCCcccc-cchhh
Q 004021 495 EGAKRISLMANEIES-----LSE----IPT--LLSLRRNDSLT-------ELPSRISSLVSLHHLDLSLTHIRG-LPQEL 555 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~-----l~~----~~~--lL~L~~~~~l~-------~lp~~i~~L~~L~~L~L~~~~i~~-lp~~~ 555 (779)
..++.+.+.++.+.. ++. .+. .|+++++ .+. .++..+.++.+|++|++++|.+.. .+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 457888888877632 211 111 3667666 444 235567778899999998887763 45555
Q ss_pred ccCcc---CcEeeccCCcCCC-----CCchhhhcCC-ccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCc
Q 004021 556 KALEK---LRYLNLEYTHYLS-----IIPHQLISGF-LKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNV 626 (779)
Q Consensus 556 ~~L~~---L~~L~l~~~~~l~-----~lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 626 (779)
..+.+ |++|++++|. +. .+... +..+ ++|+.|++.+|.+.. .........+..+++|+.
T Consensus 102 ~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~----------~~~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 102 ESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEG----------ASCEALAKALRANRDLKE 169 (319)
T ss_pred HHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCc----------hHHHHHHHHHHhCCCcCE
Confidence 55555 9999998884 43 22233 5566 888999999888763 101234556677788888
Q ss_pred eeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCC
Q 004021 627 LSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGP 706 (779)
Q Consensus 627 L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 706 (779)
|+++.+....- .+..+ +..+..+++|+.|++++|........ .+. ..+..+++|+.|++++++
T Consensus 170 L~l~~n~l~~~----~~~~l-~~~l~~~~~L~~L~L~~n~i~~~~~~--------~l~----~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 170 LNLANNGIGDA----GIRAL-AEGLKANCNLEVLDLNNNGLTDEGAS--------ALA----ETLASLKSLEVLNLGDNN 232 (319)
T ss_pred EECcCCCCchH----HHHHH-HHHHHhCCCCCEEeccCCccChHHHH--------HHH----HHhcccCCCCEEecCCCc
Confidence 88885543210 00011 12234557999999998754321110 011 245678899999999863
Q ss_pred CCccccC-C-----CCCCCCccEEeeeCCC
Q 004021 707 DLKSIYP-N-----PLHFPKLKKIGVYGCP 730 (779)
Q Consensus 707 ~l~~l~~-~-----~~~l~~L~~L~l~~c~ 730 (779)
+..... . ....+.|++|++.+|.
T Consensus 233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 233 -LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred -CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 443211 0 1124789999999884
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.3e-07 Score=72.48 Aligned_cols=60 Identities=28% Similarity=0.387 Sum_probs=51.1
Q ss_pred ccCceeeecCCcccccch-hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 536 VSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 536 ~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
++|++|++++|.++.+|. .|.++++|++|++++| .++.+|++.+.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478899999999999885 5788999999999988 67888887788999999999988853
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.9e-08 Score=98.99 Aligned_cols=200 Identities=21% Similarity=0.194 Sum_probs=99.5
Q ss_pred ccCCccEEEccccccccccc------Cccc--ccccccccccc---cchhhcccccCceeeecCCcccccchh--hccCc
Q 004021 493 EWEGAKRISLMANEIESLSE------IPTL--LSLRRNDSLTE---LPSRISSLVSLHHLDLSLTHIRGLPQE--LKALE 559 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~l~~------~~~l--L~L~~~~~l~~---lp~~i~~L~~L~~L~L~~~~i~~lp~~--~~~L~ 559 (779)
.++++|.+++.+..+...+. .+.+ ||||.| -+.. +-.-...|++|+.|+|+.|.+....++ -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34678888888766544332 1111 555555 3322 122234555666666665554433222 12345
Q ss_pred cCcEeeccCCcCCC--CCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccc
Q 004021 560 KLRYLNLEYTHYLS--IIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAV 637 (779)
Q Consensus 560 ~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 637 (779)
+|+.|.|++|. +. .+-. ++..+++|+.|++.+|.... ........++.|++|+|+.|..-.+
T Consensus 198 ~lK~L~l~~CG-ls~k~V~~-~~~~fPsl~~L~L~~N~~~~--------------~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 198 HLKQLVLNSCG-LSWKDVQW-ILLTFPSLEVLYLEANEIIL--------------IKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred hhheEEeccCC-CCHHHHHH-HHHhCCcHHHhhhhcccccc--------------eecchhhhhhHHhhccccCCccccc
Confidence 55556666552 22 1111 13345555556555553110 0111122344556666664433221
Q ss_pred ccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccC--CC
Q 004021 638 QKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYP--NP 715 (779)
Q Consensus 638 ~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~ 715 (779)
. ..+..+.+|.|..|+++.|.. .++-. .+++. . .....||+|+.|.+.. ++...|+. .+
T Consensus 262 ~--------~~~~~~~l~~L~~Lnls~tgi-~si~~-~d~~s---~-----~kt~~f~kL~~L~i~~-N~I~~w~sl~~l 322 (505)
T KOG3207|consen 262 D--------QGYKVGTLPGLNQLNLSSTGI-ASIAE-PDVES---L-----DKTHTFPKLEYLNISE-NNIRDWRSLNHL 322 (505)
T ss_pred c--------cccccccccchhhhhccccCc-chhcC-CCccc---h-----hhhcccccceeeeccc-Cccccccccchh
Confidence 1 123456788888888887543 22211 00000 0 1245689999999887 45556654 44
Q ss_pred CCCCCccEEeeeC
Q 004021 716 LHFPKLKKIGVYG 728 (779)
Q Consensus 716 ~~l~~L~~L~l~~ 728 (779)
..+++|+.|.+..
T Consensus 323 ~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 323 RTLENLKHLRITL 335 (505)
T ss_pred hccchhhhhhccc
Confidence 5677888877653
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.42 E-value=7.4e-06 Score=81.74 Aligned_cols=138 Identities=17% Similarity=0.244 Sum_probs=84.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEech---HHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQT---FQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILS 253 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~---i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 253 (779)
..+.+.|+|.+|+|||+||+++++... .....+.|+++.. ....+... ++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~~~~~~~~~~------------------------~~ 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQYFSPAVLEN------------------------LE 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhhhhhHHHHhh------------------------cc
Confidence 346789999999999999999999872 2233456666521 11111111 11
Q ss_pred CCcceeehhhcccc-------------ccc-cCCCcEEEEEeCc----------hhhhhhcC-CceeEccCCChHHHHHH
Q 004021 254 PKKFRIDLTELGVP-------------LQM-LNAGFKIVLKTRS----------AGVCDQMD-SKNLEVYSLAHDEAWKL 308 (779)
Q Consensus 254 ~kr~~~~ld~l~~~-------------~~~-~~~gs~IivTTR~----------~~va~~~~-~~~~~l~~L~~~~a~~L 308 (779)
+. -++.+|++... +.. ...|..+||+|.+ ..+.+.+. ...++++++++++.+++
T Consensus 91 ~~-dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQ-DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 11 12333333211 111 1235566555443 35555555 67889999999999999
Q ss_pred HHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 309 FQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 309 f~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
+.+.+.......+ +++..-|++++.|-.-++..+
T Consensus 170 L~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 170 LQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 9999876543333 567788888888766555443
No 44
>PF05729 NACHT: NACHT domain
Probab=98.39 E-value=4.1e-06 Score=79.26 Aligned_cols=125 Identities=16% Similarity=0.317 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCC----CCEEEEEEec---------hHHHHHHHHhCCCcchhhhhcchhhHH
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHN----FDVVIWAAVQ---------TFQDDIGKRIGFSEDKKWKEKSLQDKA 245 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~----F~~~~wv~v~---------~i~~~i~~~l~~~~~~~~~~~~~~~~~ 245 (779)
+++.|+|.+|+||||+++.++.+. ..... +...+|++.. .+...|..+.... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES------IAPIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc------hhhhHH--
Confidence 588999999999999999999887 32222 4566677771 2333333333221 011111
Q ss_pred HHHHHh-hCCCcceeehhhc---ccc----------------ccc-cCCCcEEEEEeCchhh---hhhcC-CceeEccCC
Q 004021 246 VDISSI-LSPKKFRIDLTEL---GVP----------------LQM-LNAGFKIVLKTRSAGV---CDQMD-SKNLEVYSL 300 (779)
Q Consensus 246 ~~l~~~-L~~kr~~~~ld~l---~~~----------------~~~-~~~gs~IivTTR~~~v---a~~~~-~~~~~l~~L 300 (779)
.+... -+.+++++.+|.+ ... +.. ..++++++||||.... ..... ...+.+.+|
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 12222 2455665544443 221 111 2468999999998766 33333 457899999
Q ss_pred ChHHHHHHHHHHh
Q 004021 301 AHDEAWKLFQEMI 313 (779)
Q Consensus 301 ~~~~a~~Lf~~~a 313 (779)
++++..+++.++.
T Consensus 151 ~~~~~~~~~~~~f 163 (166)
T PF05729_consen 151 SEEDIKQYLRKYF 163 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998775
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=3.6e-07 Score=100.05 Aligned_cols=185 Identities=24% Similarity=0.267 Sum_probs=130.1
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCc-cCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALE-KLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
++++++ .+..-+..+..+.++..|++.++.++.+|.....+. +|+.|++++| .+..+|.. ++.+++|+.|+++.|.
T Consensus 98 l~~~~~-~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLN-RLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFND 174 (394)
T ss_pred eecccc-ccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCch
Confidence 556666 554455567777899999999999999999999985 9999999999 78899865 8999999999999998
Q ss_pred CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccC----CCCCcc---------cCcccccccCcceEEe
Q 004021 596 SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKF----FKYPKL---------DLTWLVFVQNLKELEI 662 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~----~~L~~L---------~~~~l~~l~~L~~L~L 662 (779)
+.. .+...+.+++|+.|+++.+....++.. .+|+.+ .+..+..+.++..|.+
T Consensus 175 l~~---------------l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 175 LSD---------------LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL 239 (394)
T ss_pred hhh---------------hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhccccccccc
Confidence 875 333333677888888887766554321 113333 1223344555555554
Q ss_pred ccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCC
Q 004021 663 IVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPIN 738 (779)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~ 738 (779)
.++. +..++ ..++.+++|+.|++++ +.+..++. ++.+.+|+.|++++......+|..
T Consensus 240 ~~n~-~~~~~----------------~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 240 SNNK-LEDLP----------------ESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred CCce-eeecc----------------chhccccccceecccc-cccccccc-ccccCccCEEeccCccccccchhh
Confidence 4422 22211 3566778889999887 56777776 778888999998887655555543
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=8.5e-08 Score=98.34 Aligned_cols=179 Identities=18% Similarity=0.109 Sum_probs=109.8
Q ss_pred ccccCCccEEEccccccccccc-------Ccc--cccccccccccccchh--hcccccCceeeecCCcccc--cchhhcc
Q 004021 491 VKEWEGAKRISLMANEIESLSE-------IPT--LLSLRRNDSLTELPSR--ISSLVSLHHLDLSLTHIRG--LPQELKA 557 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~-------~~~--lL~L~~~~~l~~lp~~--i~~L~~L~~L~L~~~~i~~--lp~~~~~ 557 (779)
...+..+|.|+++.|-+.+... .+. -|+|+.| .+...-.+ -..+.+|+.|.|+.|+++. +-.....
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 4566788889998876654322 122 2888888 55543222 2367888999999998763 3334556
Q ss_pred CccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccc
Q 004021 558 LEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAV 637 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 637 (779)
+++|+.|+|..|..+..-... ..-+..|+.|++++|.+.. .......+.|+.|+.|+++.++..++
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~-------------~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID-------------FDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred CCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc-------------cccccccccccchhhhhccccCcchh
Confidence 788899999888422211111 3456778889998887664 22334566778888888886665543
Q ss_pred cc--CCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccC
Q 004021 638 QK--FFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILY 704 (779)
Q Consensus 638 ~~--~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 704 (779)
.. ...+. -...+++|++|++..|+. .+... + ..+..+++|+.|.+..
T Consensus 287 ~~~d~~s~~-----kt~~f~kL~~L~i~~N~I-~~w~s---------l-----~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 287 AEPDVESLD-----KTHTFPKLEYLNISENNI-RDWRS---------L-----NHLRTLENLKHLRITL 335 (505)
T ss_pred cCCCccchh-----hhcccccceeeecccCcc-ccccc---------c-----chhhccchhhhhhccc
Confidence 21 11111 135678899999988554 22211 0 2445567777777654
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.31 E-value=2e-05 Score=78.86 Aligned_cols=154 Identities=17% Similarity=0.221 Sum_probs=91.5
Q ss_pred hhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHH---HHHHhCCCcchhh
Q 004021 160 QEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDD---IGKRIGFSEDKKW 236 (779)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~---i~~~l~~~~~~~~ 236 (779)
.+..++.+.+++... ....|.|+|.+|+|||+||+.+++.. .......+++++..+... +...+
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~-------- 88 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQADPEVLEGL-------- 88 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHHhHHHHHhhc--------
Confidence 344666676665443 56789999999999999999999876 223344566666333221 11111
Q ss_pred hhcchhhHHHHHHHhhCCCcceeehhhccc-------------cccc-cCCCcEEEEEeCchh---------hhhhcC-C
Q 004021 237 KEKSLQDKAVDISSILSPKKFRIDLTELGV-------------PLQM-LNAGFKIVLKTRSAG---------VCDQMD-S 292 (779)
Q Consensus 237 ~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~-------------~~~~-~~~gs~IivTTR~~~---------va~~~~-~ 292 (779)
++.. .+.+|++.. .+.. ...+.++|+||+... +...+. .
T Consensus 89 ----------------~~~~-lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 89 ----------------EQAD-LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ----------------ccCC-EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 1111 111222110 0000 123457888887532 222232 4
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVG 346 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g 346 (779)
..+.++++++++-..++...+.......+ ++....|++.++|.|..+..+.
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 57899999999999999876543332222 4667888888999888776554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=5.6e-08 Score=105.26 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=109.0
Q ss_pred cccccCCccEEEcccccccccccCcc--------------------------------------cccccccccccccchh
Q 004021 490 KVKEWEGAKRISLMANEIESLSEIPT--------------------------------------LLSLRRNDSLTELPSR 531 (779)
Q Consensus 490 ~~~~~~~lr~l~l~~~~~~~l~~~~~--------------------------------------lL~L~~~~~l~~lp~~ 531 (779)
++..++.+|+|.+.++++........ ..+.+.| .+..+-.+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHHH
Confidence 45567899999999887654322111 0567777 77777788
Q ss_pred hcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCc
Q 004021 532 ISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDA 611 (779)
Q Consensus 532 i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 611 (779)
+.-+++|+.|||++|++...- .+..|++|++|||++| .+..+|.-....+. |+.|.+.+|...
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~-------------- 245 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT-------------- 245 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH--------------
Confidence 888999999999999988875 7888999999999999 78888873223444 999999988655
Q ss_pred hhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccc
Q 004021 612 EPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTE 667 (779)
Q Consensus 612 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~ 667 (779)
.+..+.+|++|+.|+++.|-...... +..+..|..|..|.|.+|+.
T Consensus 246 --tL~gie~LksL~~LDlsyNll~~hse--------L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 246 --TLRGIENLKSLYGLDLSYNLLSEHSE--------LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred --hhhhHHhhhhhhccchhHhhhhcchh--------hhHHHHHHHHHHHhhcCCcc
Confidence 46677788999999999776443221 12344566777777777653
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.30 E-value=7.6e-05 Score=76.81 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=86.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHH-HhhCCC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDIS-SILSPK 255 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~L~~k 255 (779)
.+.-...||++|+||||||+.++... ...|...-=+.. ...+..+..+.-+ ....++
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~-------------------gvkdlr~i~e~a~~~~~~gr 104 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS-------------------GVKDLREIIEEARKNRLLGR 104 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc-------------------cHHHHHHHHHHHHHHHhcCC
Confidence 67778899999999999999999877 555632211100 1111222222221 223366
Q ss_pred cceeehhhcc--------ccccccCCCcEEEE--EeCchhhh---hhcC-CceeEccCCChHHHHHHHHHHhhccCCCC-
Q 004021 256 KFRIDLTELG--------VPLQMLNAGFKIVL--KTRSAGVC---DQMD-SKNLEVYSLAHDEAWKLFQEMIERSTLDS- 320 (779)
Q Consensus 256 r~~~~ld~l~--------~~~~~~~~gs~Iiv--TTR~~~va---~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~- 320 (779)
+..+-+|+|- ..+|.-..|.-|+| ||-+.... .... ..++.+++|+.+|-.+++.+.+......-
T Consensus 105 ~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~ 184 (436)
T COG2256 105 RTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLG 184 (436)
T ss_pred ceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCC
Confidence 7666666652 12445567877777 77775432 2223 68999999999999999998543322111
Q ss_pred --CCCh-HHHHHHHHHHhCCChhH
Q 004021 321 --HTSI-PELAETLARECGRLPLA 341 (779)
Q Consensus 321 --~~~l-~~~~~~I~~~c~glPLa 341 (779)
...+ ++...-+++.++|=--+
T Consensus 185 ~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 185 GQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred cccccCCHHHHHHHHHhcCchHHH
Confidence 1112 44667788888885443
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.28 E-value=7.1e-05 Score=81.84 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=94.0
Q ss_pred ccccchhhhHHH---HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCC
Q 004021 155 QTIVGQEKLLPR---VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFS 231 (779)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~ 231 (779)
.++||++..+.. +.+++..+ ....+.++|.+|+||||||+.+++.. ...|.. ++....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~---l~a~~~----------- 72 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGAT---DAPFEA---LSAVTS----------- 72 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---Eecccc-----------
Confidence 457898887665 77777655 56678899999999999999999876 333321 111000
Q ss_pred cchhhhhcchhhHHHHHHHhh-CCCcceeehhhcccc--------ccccCCCcEEEE--EeCchh--hhhh-cC-CceeE
Q 004021 232 EDKKWKEKSLQDKAVDISSIL-SPKKFRIDLTELGVP--------LQMLNAGFKIVL--KTRSAG--VCDQ-MD-SKNLE 296 (779)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~L-~~kr~~~~ld~l~~~--------~~~~~~gs~Iiv--TTR~~~--va~~-~~-~~~~~ 296 (779)
...+..+......... .+++..+.+|++... ++.-..|..++| ||.+.. +... .. ...+.
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~ 147 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFE 147 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeE
Confidence 0001111111111111 233344444443211 111123555555 344332 2111 12 46789
Q ss_pred ccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHH
Q 004021 297 VYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVG 346 (779)
Q Consensus 297 l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g 346 (779)
+.+++.++...++.+.+.........--.+....|++.|+|-|..+..+.
T Consensus 148 ~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 148 LKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred eCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999876442111101225677889999999987665443
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.25 E-value=0.00011 Score=83.80 Aligned_cols=187 Identities=16% Similarity=0.132 Sum_probs=106.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCC---CEEEEEEe--ch-------HHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNF---DVVIWAAV--QT-------FQD 222 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F---~~~~wv~v--~~-------i~~ 222 (779)
+.++|++..+..+.+.+... ....+.|+|.+|+||||||+.+++.. .....+ ...-|+.+ .. +..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 45899999999988887644 45679999999999999999998765 322322 12345555 11 111
Q ss_pred HHH---------------HHhCCCcc---------------hhhhhcchhhHHHHHHHhhCCCccee-----------eh
Q 004021 223 DIG---------------KRIGFSED---------------KKWKEKSLQDKAVDISSILSPKKFRI-----------DL 261 (779)
Q Consensus 223 ~i~---------------~~l~~~~~---------------~~~~~~~~~~~~~~l~~~L~~kr~~~-----------~l 261 (779)
.++ ...+.... ...... ....+..+...++++++.. +|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 111 11110000 000000 1234667888888877633 23
Q ss_pred hhccccccccCCCcEEEE--EeCchhh-hhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhC
Q 004021 262 TELGVPLQMLNAGFKIVL--KTRSAGV-CDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECG 336 (779)
Q Consensus 262 d~l~~~~~~~~~gs~Iiv--TTR~~~v-a~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~ 336 (779)
+.+...+....+...|++ ||++... ...+. ...+.+.+++.+|.+.++.+.+.......+ +++...|.+.+.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCC
Confidence 344444444444445555 6665432 22221 356789999999999999998764331111 345555666555
Q ss_pred CChhHHHHHHHH
Q 004021 337 RLPLALKTVGRA 348 (779)
Q Consensus 337 glPLai~~~g~~ 348 (779)
.-+-|+..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 455666555443
No 52
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.24 E-value=2.8e-06 Score=87.67 Aligned_cols=275 Identities=16% Similarity=0.142 Sum_probs=171.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCC-CEEEEEEe------chHHHHHHHHhCCCcchhhhhcchhhHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNF-DVVIWAAV------QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDIS 249 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F-~~~~wv~v------~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 249 (779)
..+.+.++|.|||||||++-++.+ . ...| +.+.++.. ..+.-.....++.+. .+-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~------~~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV------QPGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc------ccchHHHHHHH
Confidence 458999999999999999999988 4 3445 56666666 223333344455441 12223344555
Q ss_pred HhhCCCcceeehhhcc----------ccccccCCCcEEEEEeCchhhhhhcCCceeEccCCChH-HHHHHHHHHhhccCC
Q 004021 250 SILSPKKFRIDLTELG----------VPLQMLNAGFKIVLKTRSAGVCDQMDSKNLEVYSLAHD-EAWKLFQEMIERSTL 318 (779)
Q Consensus 250 ~~L~~kr~~~~ld~l~----------~~~~~~~~gs~IivTTR~~~va~~~~~~~~~l~~L~~~-~a~~Lf~~~a~~~~~ 318 (779)
....++|.+.++|+-. ..+..+...-.|+.|+|...... +...+.+++|+.. ++.++|...+.....
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--GEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--ccccccCCccccCCchhHHHHHHHHHhcc
Confidence 6666667666665531 11223445557888888643321 2556778888765 799999887754321
Q ss_pred --CCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHH----HHHHHhcccCcCCCchHHHHHHHHHHHhcCCc
Q 004021 319 --DSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRER----AIEKMRTSASTFSGMEENVFLRLKFSYDSLSM 392 (779)
Q Consensus 319 --~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~----~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 392 (779)
.-...-.....+|.++..|.|++|..+++..+.- ...+-.. -...+........--+......+..||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1122335778999999999999999998877652 2222222 12222222111111134677899999999998
Q ss_pred cchhhhhhhccccCCCcccChHHHHHHHHHcCCCc--chhhHHHHHHHHHHccccccc---CCCcEEechHHHHHHHHHH
Q 004021 393 DKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMA--DFDRGCEFINDLLHACLLEEE---GDDHVKMHDMIREMSLWIA 467 (779)
Q Consensus 393 ~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~--~~~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~~~a~~~~ 467 (779)
..+..|..++.|...+... ...|.+-|-.. +.......+..+++.++.... ....|+.-+-++.|+..+.
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8899999999998776554 23455555332 224455556778888886553 3445666667777777666
Q ss_pred hh
Q 004021 468 WT 469 (779)
Q Consensus 468 ~~ 469 (779)
.+
T Consensus 315 ~r 316 (414)
T COG3903 315 HR 316 (414)
T ss_pred Hh
Confidence 55
No 53
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.23 E-value=0.00022 Score=80.86 Aligned_cols=194 Identities=17% Similarity=0.136 Sum_probs=109.2
Q ss_pred cccccchhhhHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccc--cCCCC--EEEEEEe------chH
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ--QHNFD--VVIWAAV------QTF 220 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~--~~~F~--~~~wv~v------~~i 220 (779)
+..+.|||+++++|...|... .+...++-|+|.+|.|||+.++.|.+..... +.... .+++|.. ..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 456889999999999998752 3334678899999999999999998776211 12222 2344443 456
Q ss_pred HHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCC-C-cc-eeehhhccccc-----------c-ccCCCcEEEE--EeCc
Q 004021 221 QDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSP-K-KF-RIDLTELGVPL-----------Q-MLNAGFKIVL--KTRS 283 (779)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-k-r~-~~~ld~l~~~~-----------~-~~~~gs~Iiv--TTR~ 283 (779)
...|..++... . ........+....+...+.. . .. .+++|++-... . ....+++|+| +|..
T Consensus 834 YqvI~qqL~g~-~-P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 834 YQVLYKQLFNK-K-PPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHcCC-C-CCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 77777777432 1 11222233444555555422 2 22 55666652111 1 1224566655 3433
Q ss_pred hh--------hhhhcCCceeEccCCChHHHHHHHHHHhhccC-CCCCCChHHHHHHHHHHhCCChhHHHHHHHHh
Q 004021 284 AG--------VCDQMDSKNLEVYSLAHDEAWKLFQEMIERST-LDSHTSIPELAETLARECGRLPLALKTVGRAM 349 (779)
Q Consensus 284 ~~--------va~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~-~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l 349 (779)
.+ +...++...+..+|.+.++-.+++..++.... .-.+..++-+|+.++..-|-.-.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 22 22222333467799999999999999886432 11112223334444444455666766654433
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=1.8e-06 Score=99.13 Aligned_cols=80 Identities=30% Similarity=0.500 Sum_probs=63.9
Q ss_pred cccccccccc-ccchhhcccccCceeeecCCccc-ccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 517 LSLRRNDSLT-ELPSRISSLVSLHHLDLSLTHIR-GLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 517 L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
|+|++| .+. .+|..|++|++|++|+|++|.+. .+|..++++++|+.|+|++|.....+|.. +++|++|++|++++|
T Consensus 423 L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 423 LGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGN 500 (623)
T ss_pred EECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCC
Confidence 677777 554 57888888888888888888886 57888888888888888888554577776 888888888888888
Q ss_pred cCCC
Q 004021 595 GSEG 598 (779)
Q Consensus 595 ~~~~ 598 (779)
.+.+
T Consensus 501 ~l~g 504 (623)
T PLN03150 501 SLSG 504 (623)
T ss_pred cccc
Confidence 7764
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.1e-07 Score=90.72 Aligned_cols=180 Identities=21% Similarity=0.179 Sum_probs=115.4
Q ss_pred cccccccccccc--cchhhcccccCceeeecCCcccc-cchhhccCccCcEeeccCCcCCCCCchh-hhcCCccCcEeee
Q 004021 516 LLSLRRNDSLTE--LPSRISSLVSLHHLDLSLTHIRG-LPQELKALEKLRYLNLEYTHYLSIIPHQ-LISGFLKLEVLRL 591 (779)
Q Consensus 516 lL~L~~~~~l~~--lp~~i~~L~~L~~L~L~~~~i~~-lp~~~~~L~~L~~L~l~~~~~l~~lp~~-~i~~L~~L~~L~l 591 (779)
+||||+. .|+. +-.-+..+.+|+.|.|.++++.. +-..|.+=.+|+.|+|+.|..++...-. ++.+++.|..|++
T Consensus 189 ~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 189 HLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL 267 (419)
T ss_pred Hhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence 4788877 6652 33345667788888888887654 5556777788888888888665543322 3577888888888
Q ss_pred ccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcc-cccccCcceEEeccccccce
Q 004021 592 LECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTW-LVFVQNLKELEIIVCTEMEE 670 (779)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~-l~~l~~L~~L~L~~~~~~~~ 670 (779)
+.|.... +........+ -++|..|+++++. .||..=.+.. ...+|+|.+|+|++|..++.
T Consensus 268 sWc~l~~----------~~Vtv~V~hi--se~l~~LNlsG~r-------rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 268 SWCFLFT----------EKVTVAVAHI--SETLTQLNLSGYR-------RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hHhhccc----------hhhhHHHhhh--chhhhhhhhhhhH-------hhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 8886553 1001111111 2456666666432 1111111111 24679999999999887765
Q ss_pred ecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccc-cCCCCCCCCccEEeeeCCC
Q 004021 671 IICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSI-YPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~ 730 (779)
-.. ..+..|+.|++|.++.|..+--- ......+|+|.+|++.+|-
T Consensus 329 ~~~---------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 329 DCF---------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hHH---------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 211 35668999999999998764211 1256689999999999873
No 56
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.12 E-value=6.8e-05 Score=88.62 Aligned_cols=159 Identities=12% Similarity=0.112 Sum_probs=102.8
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCC------CChhHHHHHHHHH
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQ------KKVGDRERAIEKM 365 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~------~~~~~w~~~~~~l 365 (779)
...+.|.||+..+...+.....+... ....+..+.|+++..|+|+-+..+-..+... .+...|..-...+
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 46889999999999999988876533 2235778999999999999999888877663 3344454322111
Q ss_pred hcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCcchhhHHHHHHHHHHcccc
Q 004021 366 RTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADFDRGCEFINDLLHACLL 445 (779)
Q Consensus 366 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~l~~L~~~sll 445 (779)
......+ .+...+..-.+.||. ..+..+...|++... |+...|...+-... ...+....+.|....++
T Consensus 287 ----~~~~~~~-~vv~~l~~rl~kL~~-~t~~Vl~~AA~iG~~--F~l~~La~l~~~~~----~~~a~~l~~al~e~lI~ 354 (849)
T COG3899 287 ----GILATTD-AVVEFLAARLQKLPG-TTREVLKAAACIGNR--FDLDTLAALAEDSP----ALEAAALLDALQEGLIL 354 (849)
T ss_pred ----CCchhhH-HHHHHHHHHHhcCCH-HHHHHHHHHHHhCcc--CCHHHHHHHHhhch----HHHHHHHHHHhHhhcee
Confidence 1112222 356668888999998 899999999998644 45555555443211 14555555555555544
Q ss_pred ccc-------CCCc---EEechHHHHHHHHH
Q 004021 446 EEE-------GDDH---VKMHDMIREMSLWI 466 (779)
Q Consensus 446 ~~~-------~~~~---~~mHdlv~~~a~~~ 466 (779)
... .... --.||.|++.|-..
T Consensus 355 ~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 355 PLSETYRFGSNVDIATYKFLHDRVQQAAYNL 385 (849)
T ss_pred ccccccccccccchhhHHhhHHHHHHHHhcc
Confidence 321 1111 25688888777543
No 57
>PRK08727 hypothetical protein; Validated
Probab=98.12 E-value=0.00013 Score=72.99 Aligned_cols=135 Identities=15% Similarity=0.099 Sum_probs=81.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH---HHHhCCCcchhhhhcchhhHHHHHHHhhC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI---GKRIGFSEDKKWKEKSLQDKAVDISSILS 253 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i---~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 253 (779)
....+.|+|..|+|||.|++++++... .....+.|+++.+....+ ++.+...
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~~~~~~~~~~~~l~~~---------------------- 94 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQAAAGRLRDALEALEGR---------------------- 94 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHHhhhhHHHHHHHHhcC----------------------
Confidence 345699999999999999999998872 223355677763322221 1111110
Q ss_pred CCcceeehhhcccc-------------cc-ccCCCcEEEEEeCch---------hhhhhcC-CceeEccCCChHHHHHHH
Q 004021 254 PKKFRIDLTELGVP-------------LQ-MLNAGFKIVLKTRSA---------GVCDQMD-SKNLEVYSLAHDEAWKLF 309 (779)
Q Consensus 254 ~kr~~~~ld~l~~~-------------~~-~~~~gs~IivTTR~~---------~va~~~~-~~~~~l~~L~~~~a~~Lf 309 (779)
-.+.+|++... +. ....|..||+||+.. .+.+.+. ...+++++++.++-..++
T Consensus 95 ---dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 95 ---SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred ---CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 02223332110 00 012466799999852 2233333 458899999999999999
Q ss_pred HHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 310 QEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 310 ~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
.+++.......+ ++...-|++.++|-.-.+
T Consensus 172 ~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 172 RERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 987765433222 567788888887655444
No 58
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.10 E-value=4.7e-05 Score=73.05 Aligned_cols=180 Identities=18% Similarity=0.167 Sum_probs=96.0
Q ss_pred ccccchhhhHHHHHHHHhc---cCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-----chHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITD---QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-----QTFQDDIGK 226 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-----~~i~~~i~~ 226 (779)
.+|||.++-++.+.-++.. ......-+-+||++|+||||||.-+++.. ...|. +++. ..-+..++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl~~il~ 97 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDLAAILT 97 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHHHHHHH
Confidence 5689999888886655542 23467789999999999999999999987 44552 2332 122333444
Q ss_pred HhCCCcchhhhhcch----hhHHHHHHHhhCCCcceeehhh------ccccccccCCCcEEEEEeCchhhhhhcC---Cc
Q 004021 227 RIGFSEDKKWKEKSL----QDKAVDISSILSPKKFRIDLTE------LGVPLQMLNAGFKIVLKTRSAGVCDQMD---SK 293 (779)
Q Consensus 227 ~l~~~~~~~~~~~~~----~~~~~~l~~~L~~kr~~~~ld~------l~~~~~~~~~gs~IivTTR~~~va~~~~---~~ 293 (779)
.+... + ..-.+.. ...++.+...+++.+..+.... +...++ +=+-|=.|||...+...+. ..
T Consensus 98 ~l~~~-~-ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~---~FTligATTr~g~ls~pLrdRFgi 172 (233)
T PF05496_consen 98 NLKEG-D-ILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP---PFTLIGATTRAGLLSSPLRDRFGI 172 (233)
T ss_dssp T--TT---EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-------EEEEEESSGCCTSHCCCTTSSE
T ss_pred hcCCC-c-EEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC---CceEeeeeccccccchhHHhhcce
Confidence 44321 0 0000111 1223344555555443222211 001111 2234556898866654444 23
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRA 348 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~ 348 (779)
..+++..+.+|-.++..+.+..-...- -++.+.+|+++|.|-|--+.-+-+.
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHH
Confidence 458999999999999988776544222 2678999999999999755544333
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.8e-06 Score=58.87 Aligned_cols=41 Identities=41% Similarity=0.485 Sum_probs=33.1
Q ss_pred ccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCch
Q 004021 536 VSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPH 577 (779)
Q Consensus 536 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~ 577 (779)
++|++|++++|+|+.+|..+++|++|++|++++| .++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4789999999999999888999999999999999 5676665
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00017 Score=81.26 Aligned_cols=185 Identities=14% Similarity=0.133 Sum_probs=99.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEE-echHHHHHHHHh-----
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAA-VQTFQDDIGKRI----- 228 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~-v~~i~~~i~~~l----- 228 (779)
.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.. .-...++.. -| .-..+..|...-
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~~~--PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVTSQ--PCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHh-cCccCCCCC--CCcccHHHHHHhcCCCceEE
Confidence 568999999999999988762 23466799999999999999988876 211111100 00 001111221100
Q ss_pred CCCcchhhhhcchhhHHHHHHHhhCCCcc-eeehhhcc-----------ccccccCCCcEEEEEeCc-hhhhhhcC--Cc
Q 004021 229 GFSEDKKWKEKSLQDKAVDISSILSPKKF-RIDLTELG-----------VPLQMLNAGFKIVLKTRS-AGVCDQMD--SK 293 (779)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-~~~ld~l~-----------~~~~~~~~gs~IivTTR~-~~va~~~~--~~ 293 (779)
..+........+..++...+...-.+.+| .+.+|++. ..+.......++|+||++ ..+...+- ..
T Consensus 92 EIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq 171 (830)
T PRK07003 92 EMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCL 171 (830)
T ss_pred EecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheE
Confidence 00000000001111111111111112233 33334331 111122346677777766 44433322 57
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCCh-hHHHHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLP-LALKTVG 346 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP-Lai~~~g 346 (779)
.|.++.++.++..+.+.+.+.......+ .+..+.|++.++|.. -|+..+-
T Consensus 172 ~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 172 QFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 8899999999999999988766543222 567889999998855 4555533
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=1.2e-06 Score=96.14 Aligned_cols=122 Identities=30% Similarity=0.332 Sum_probs=87.9
Q ss_pred CCccEEEcccccccc----cccCcc--cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccC
Q 004021 495 EGAKRISLMANEIES----LSEIPT--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEY 568 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~----l~~~~~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~ 568 (779)
..+..+++..|.+.. +..... .|++.+| .|..+...+..+.+|++|++++|.|+.+. .+..++.|+.|++++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheecc
Confidence 345555566666655 222222 3888888 88887766888899999999999888885 477788899999999
Q ss_pred CcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHh--hcCCCCCCceeEEeeccccc
Q 004021 569 THYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRE--LLGLKRLNVLSWSFRSSLAV 637 (779)
Q Consensus 569 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~~~~~ 637 (779)
| .+..++. +..+++|+.+++.+|.+.. ++. +..+.+|+.+.+..+....+
T Consensus 150 N-~i~~~~~--~~~l~~L~~l~l~~n~i~~----------------ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 150 N-LISDISG--LESLKSLKLLDLSYNRIVD----------------IENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred C-cchhccC--CccchhhhcccCCcchhhh----------------hhhhhhhhccchHHHhccCCchhcc
Confidence 8 6777776 6778889999988887764 122 46677777777776665443
No 62
>PTZ00202 tuzin; Provisional
Probab=98.01 E-value=6.4e-05 Score=78.75 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=91.2
Q ss_pred cccccchhhhHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe---chHHHHHHHHhC
Q 004021 154 EQTIVGQEKLLPRVWRCITDQQ-KNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV---QTFQDDIGKRIG 229 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v---~~i~~~i~~~l~ 229 (779)
.+.|+||+.+...+...|.+.+ ...+++.|.|++|+|||||++.+.... . ....+++. .+++..|+.+|+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~-----~~qL~vNprg~eElLr~LL~ALG 334 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G-----MPAVFVDVRGTEDTLRSVVKALG 334 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C-----ceEEEECCCCHHHHHHHHHHHcC
Confidence 4789999999999999997532 245699999999999999999998766 2 12344444 789999999999
Q ss_pred CCcchhhhhcchhhHHHHHHHhhC--CCcceeeh--------hhc---cccccccCCCcEEEEEeCchhhhhhc---C-C
Q 004021 230 FSEDKKWKEKSLQDKAVDISSILS--PKKFRIDL--------TEL---GVPLQMLNAGFKIVLKTRSAGVCDQM---D-S 292 (779)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~L~--~kr~~~~l--------d~l---~~~~~~~~~gs~IivTTR~~~va~~~---~-~ 292 (779)
.+... ....-.....+.+.+.-. +++..+++ ..+ ...+.....-|.|++---.+.+.-.. . -
T Consensus 335 V~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprl 413 (550)
T PTZ00202 335 VPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRL 413 (550)
T ss_pred CCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccc
Confidence 75221 111112233333333222 33332221 111 01122334556666644433332111 1 3
Q ss_pred ceeEccCCChHHHHHHHHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEM 312 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~ 312 (779)
..|.+++++.++|...-.+.
T Consensus 414 df~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 414 DFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred eeEecCCCCHHHHHHHHhhc
Confidence 56788999999988776554
No 63
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=0.00031 Score=69.34 Aligned_cols=173 Identities=17% Similarity=0.308 Sum_probs=97.0
Q ss_pred ccccch-hhhHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCc
Q 004021 155 QTIVGQ-EKLLPRVWRCITDQ-QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSE 232 (779)
Q Consensus 155 ~~~vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~ 232 (779)
..++|- .+..-...+.+.+. ......+-|+|..|+|||.|.+++++.. .....=..+++++..++...+...+...
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~-~~~~~~~~v~y~~~~~f~~~~~~~~~~~- 86 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA-QKQHPGKRVVYLSAEEFIREFADALRDG- 86 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH-HHHCTTS-EEEEEHHHHHHHHHHHHHTT-
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH-HhccccccceeecHHHHHHHHHHHHHcc-
Confidence 444674 33334444555443 3234568899999999999999999987 2222223577888777766666554321
Q ss_pred chhhhhcchhhHHHHHHHhhCCCcceeehhhcccc-------------cc-ccCCCcEEEEEeCch---------hhhhh
Q 004021 233 DKKWKEKSLQDKAVDISSILSPKKFRIDLTELGVP-------------LQ-MLNAGFKIVLKTRSA---------GVCDQ 289 (779)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~-------------~~-~~~~gs~IivTTR~~---------~va~~ 289 (779)
....+.+.+++-. .+.+|++... +. ....|.+||+|++.. .+.+.
T Consensus 87 -----------~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SR 154 (219)
T PF00308_consen 87 -----------EIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSR 154 (219)
T ss_dssp -----------SHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHH
T ss_pred -----------cchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhh
Confidence 1123344444333 2333333111 00 113577899999652 22333
Q ss_pred cC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 290 MD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 290 ~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
+. .-.+++++++.++-..++.+.+......-+ +++..-|++.+.+..-.+..
T Consensus 155 l~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 155 LSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHH
T ss_pred HhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHH
Confidence 33 568899999999999999999877653322 56667777776665544443
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.98 E-value=0.00071 Score=68.42 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=69.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHHHHhCCCcchhhhhcchhhHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISS 250 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 250 (779)
.++-+.+||.+|+||||||+.+.... +.+- ..||.. ..-.++|.++- +.. .
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~a-----------------q~~-~ 217 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQA-----------------QNE-K 217 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHH-----------------HHH-H
Confidence 78889999999999999999999876 2221 344554 11122222211 111 1
Q ss_pred hhCCCcceeehhhc--------cccccccCCCcEEEE--EeCchhh---hhhcC-CceeEccCCChHHHHHHHHHHh
Q 004021 251 ILSPKKFRIDLTEL--------GVPLQMLNAGFKIVL--KTRSAGV---CDQMD-SKNLEVYSLAHDEAWKLFQEMI 313 (779)
Q Consensus 251 ~L~~kr~~~~ld~l--------~~~~~~~~~gs~Iiv--TTR~~~v---a~~~~-~~~~~l~~L~~~~a~~Lf~~~a 313 (779)
.+..+|..+-+|+| ...+|.-.+|.-++| ||.+... +..+. ..++-|++|+.++-..++.+..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 12233333334443 123455567776666 7777554 23333 6889999999999999988743
No 65
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.96 E-value=0.00024 Score=75.98 Aligned_cols=183 Identities=16% Similarity=0.140 Sum_probs=101.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD-VVIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~-~~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
..++|++..++.+.+++..+ ..+.+.++|.+|+||||+|+.+++.. . ...++ ..+.+++.++.......+.....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l-~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAREL-Y-GDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh-c-CcccccceEEechhhhhhcchhhhhcCcc
Confidence 56899999999999988766 45568899999999999999999876 2 12222 23344443332211111110000
Q ss_pred -h-hh-----hhcchhhHHHHHHHhh------CCCcceeehhhccc-----------cccccCCCcEEEEEeCc-hhhhh
Q 004021 234 -K-KW-----KEKSLQDKAVDISSIL------SPKKFRIDLTELGV-----------PLQMLNAGFKIVLKTRS-AGVCD 288 (779)
Q Consensus 234 -~-~~-----~~~~~~~~~~~l~~~L------~~kr~~~~ld~l~~-----------~~~~~~~gs~IivTTR~-~~va~ 288 (779)
. .. ...........+.+.. .+.+-.+.+|++.. .+......+++|+||.. ..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 0 00 0000111111111111 11122344444311 11122345678877754 33323
Q ss_pred hcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 289 QMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 289 ~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
... ...+.+.+++.++....+.+.+...+...+ .+....+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 222 457788999999999999887765442222 56788999999887655443
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=3.5e-05 Score=81.24 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=28.6
Q ss_pred cccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 535 LVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 535 L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
+.++++|++++|.++.+|. --.+|++|.+++|..+..+|.. + ..+|++|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence 4555566666665555551 1224566666655555555543 3 235556666555
No 67
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.90 E-value=8.2e-06 Score=62.45 Aligned_cols=53 Identities=40% Similarity=0.659 Sum_probs=45.8
Q ss_pred ccccccccccccc-hhhcccccCceeeecCCcccccch-hhccCccCcEeeccCCc
Q 004021 517 LSLRRNDSLTELP-SRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTH 570 (779)
Q Consensus 517 L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~ 570 (779)
|++++| .+..+| ..|.++++|++|++++|.++.+|+ .|.++++|++|++++|.
T Consensus 6 L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 6 LDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp EEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred EECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 566677 777776 478899999999999999999875 68999999999999983
No 68
>PLN03150 hypothetical protein; Provisional
Probab=97.89 E-value=2.5e-05 Score=89.89 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=80.9
Q ss_pred cCceeeecCCccc-ccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhH
Q 004021 537 SLHHLDLSLTHIR-GLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLM 615 (779)
Q Consensus 537 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 615 (779)
.++.|+|++|.+. .+|..+++|++|+.|+|++|.....+|.. ++.+++|+.|++++|.+.+ ..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg--------------~iP 483 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNG--------------SIP 483 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCC--------------CCc
Confidence 3778899999887 48889999999999999999655588887 8999999999999998874 467
Q ss_pred HhhcCCCCCCceeEEeecccccccCCCCCcccCccccc-ccCcceEEeccccc
Q 004021 616 RELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVF-VQNLKELEIIVCTE 667 (779)
Q Consensus 616 ~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~-l~~L~~L~L~~~~~ 667 (779)
..+++|++|+.|+++.|... .-.|..++. +.++..+++.+|..
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l~---------g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSLS---------GRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred hHHhcCCCCCEEECcCCccc---------ccCChHHhhccccCceEEecCCcc
Confidence 77888999999999865432 112333332 23566777777644
No 69
>PRK09087 hypothetical protein; Validated
Probab=97.89 E-value=0.00039 Score=68.95 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCC----cchhhhhcchhhHHHHHHHhhC
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFS----EDKKWKEKSLQDKAVDISSILS 253 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~ 253 (779)
.+.+.|+|..|+|||+|++.++... .. .+++...+..++...+... ++-.....+.+++...+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-~~-------~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n---- 111 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-DA-------LLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLIN---- 111 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-CC-------EEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHH----
Confidence 4678999999999999999988765 21 1444322222222211100 000000001111111000
Q ss_pred CCcceeehhhccccccccCCCcEEEEEeCc---------hhhhhhcC-CceeEccCCChHHHHHHHHHHhhccCCCCCCC
Q 004021 254 PKKFRIDLTELGVPLQMLNAGFKIVLKTRS---------AGVCDQMD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTS 323 (779)
Q Consensus 254 ~kr~~~~ld~l~~~~~~~~~gs~IivTTR~---------~~va~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 323 (779)
. ....|..||+|++. ..+...+. ...+++++++.++-.+++.+.+.......+
T Consensus 112 -------------~--~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~-- 174 (226)
T PRK09087 112 -------------S--VRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD-- 174 (226)
T ss_pred -------------H--HHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 0 11246779998873 33344444 678999999999999999998866443222
Q ss_pred hHHHHHHHHHHhCCChhHHHH
Q 004021 324 IPELAETLARECGRLPLALKT 344 (779)
Q Consensus 324 l~~~~~~I~~~c~glPLai~~ 344 (779)
+++..-|++.+.|..-++..
T Consensus 175 -~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 175 -PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred -HHHHHHHHHHhhhhHHHHHH
Confidence 67788888888887766654
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=7.5e-06 Score=80.11 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=24.0
Q ss_pred CCCCCCccEEEccCCCCCccccC--CCCCCCCccEEeeeCCCCCCCC
Q 004021 691 HNFFTQLESLGILYGPDLKSIYP--NPLHFPKLKKIGVYGCPKLKKL 735 (779)
Q Consensus 691 ~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~L~~l 735 (779)
...||.+-.|.|.. +++.+|.. ....||.|..|.+.+.|-+..+
T Consensus 220 se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 34555555555554 44555543 3445666666666666654443
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=97.87 E-value=0.00099 Score=74.45 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=97.0
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-----chHHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-----QTFQDDIGKR 227 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-----~~i~~~i~~~ 227 (779)
.+++|.++.++++.+|+..- ....+.+.|+|++|+||||+|+++++.. .|+.+. ++. ......++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~ie-lnasd~r~~~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEVIE-LNASDQRTADVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEE-EcccccccHHHHHHHHHH
Confidence 56899999999999998753 1236789999999999999999999976 133221 222 1112222211
Q ss_pred hCCCcchhhhhcchhhHHHHHHHhhCCCcceeehhhcccccc-------------ccCCCcEEEEEeCchh-hhh-hcC-
Q 004021 228 IGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLTELGVPLQ-------------MLNAGFKIVLKTRSAG-VCD-QMD- 291 (779)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~~~-------------~~~~gs~IivTTR~~~-va~-~~~- 291 (779)
.... ......++.++.+|++..... ....+..||+|+.+.. ... ...
T Consensus 88 ~~~~-----------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 88 AATS-----------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred hhcc-----------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhc
Confidence 1100 000111222333443321110 0023455777775422 211 122
Q ss_pred -CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 292 -SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 292 -~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
...+.+.+++.++....+.+.+.......+ .+....|++.++|-.-.+..
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 567899999999999999888765543333 57789999999996655543
No 72
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.85 E-value=0.00073 Score=67.60 Aligned_cols=168 Identities=11% Similarity=0.137 Sum_probs=86.3
Q ss_pred ccchhhhH-HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchh
Q 004021 157 IVGQEKLL-PRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKK 235 (779)
Q Consensus 157 ~vGr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~ 235 (779)
+.|..... ..+.++.. .....+.+.|+|..|+|||+||+++++... .... ...+++.......+ ...... + .
T Consensus 21 ~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~~~~-~~~~~~-~-~ 93 (227)
T PRK08903 21 VAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPLLAF-DFDPEA-E-L 93 (227)
T ss_pred ccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhHHHH-hhcccC-C-E
Confidence 34554443 33333333 222456788999999999999999998762 1222 34455543322221 000000 0 0
Q ss_pred hhhcchh----hHHHHHHHhhCCCcceeehhhccccccccCCCc-EEEEEeCchhh--------hhhcC-CceeEccCCC
Q 004021 236 WKEKSLQ----DKAVDISSILSPKKFRIDLTELGVPLQMLNAGF-KIVLKTRSAGV--------CDQMD-SKNLEVYSLA 301 (779)
Q Consensus 236 ~~~~~~~----~~~~~l~~~L~~kr~~~~ld~l~~~~~~~~~gs-~IivTTR~~~v--------a~~~~-~~~~~l~~L~ 301 (779)
.-.++.+ .....+...+. . ....|. .||+|++.... ...+. ...+.+++++
T Consensus 94 liiDdi~~l~~~~~~~L~~~~~---------~------~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~ 158 (227)
T PRK08903 94 YAVDDVERLDDAQQIALFNLFN---------R------VRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLS 158 (227)
T ss_pred EEEeChhhcCchHHHHHHHHHH---------H------HHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCC
Confidence 0000000 01111111110 0 011333 36666654321 11222 3688999999
Q ss_pred hHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHh
Q 004021 302 HDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAM 349 (779)
Q Consensus 302 ~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l 349 (779)
+++-..++.+.+.......+ ++....+++.+.|.+..+..+-..+
T Consensus 159 ~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 159 DADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98877777765543332222 5678888889999998887665544
No 73
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.83 E-value=0.00066 Score=68.03 Aligned_cols=160 Identities=13% Similarity=0.195 Sum_probs=89.3
Q ss_pred ccccchhh-hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEK-LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
..++|-.. .+..+.++.... ..+.+.|+|+.|+|||+|++++++.. . ..-..+.++++........
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~~~~~~~-------- 89 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDKRAWFVP-------- 89 (235)
T ss_pred ccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHHHhhhhH--------
Confidence 44457333 333333333333 44688999999999999999999876 2 2223456666622111000
Q ss_pred hhhhhcchhhHHHHHHHhhCCCcceeehhhccc-------------cccc-cCCC-cEEEEEeCch---------hhhhh
Q 004021 234 KKWKEKSLQDKAVDISSILSPKKFRIDLTELGV-------------PLQM-LNAG-FKIVLKTRSA---------GVCDQ 289 (779)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~-------------~~~~-~~~g-s~IivTTR~~---------~va~~ 289 (779)
.+.+.+..-. ++.+|++.. .+.. ...| .++|+||+.. .+.+.
T Consensus 90 -------------~~~~~~~~~d-lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 90 -------------EVLEGMEQLS-LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred -------------HHHHHhhhCC-EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 0111111101 222333311 0100 1133 4799999853 23334
Q ss_pred cC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 290 MD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 290 ~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
+. ..+++++++++++-.+++.+++.......+ +++..-|++.+.|-.-++..
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHH
Confidence 44 578999999999999999887755432222 57778888888876655543
No 74
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00045 Score=72.70 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=98.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhc---cccCCCCEEEEEEe--c----hHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFC---HQQHNFDVVIWAAV--Q----TFQDDIG 225 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~---~~~~~F~~~~wv~v--~----~i~~~i~ 225 (779)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++..- ....|+|...|... . +-.+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH
Confidence 357899999999999987662 345778999999999999999988541 12456776666542 0 0111111
Q ss_pred HHhCCCcchhhhhcchhhHHHHHHHhhCCCcceeehh----------hccccccccCCCcEEEEEeCchh-hhhhcC--C
Q 004021 226 KRIGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLT----------ELGVPLQMLNAGFKIVLKTRSAG-VCDQMD--S 292 (779)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld----------~l~~~~~~~~~gs~IivTTR~~~-va~~~~--~ 292 (779)
+.+... -...++|+.+..+ .+...+.....++.+|++|.+.+ +..... .
T Consensus 83 ~~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 111110 0112333322211 11122333346788888886643 323222 5
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
..+.+.++++++....+.+..... -.+.+..++..++|.|..+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHH
Confidence 788999999999988776554211 134577889999999875543
No 75
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00088 Score=73.61 Aligned_cols=156 Identities=11% Similarity=0.154 Sum_probs=99.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcc
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKF 257 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 257 (779)
..-+.|+|..|+|||+|++++++.. .....--.+++++..++...+...++.. . .....+.+.++.-.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~~~~f~~~~~~~l~~~-~---------~~~~~~~~~~~~~d- 208 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMSGDEFARKAVDILQKT-H---------KEIEQFKNEICQND- 208 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHHHHHHHHHHh-h---------hHHHHHHHHhccCC-
Confidence 3568899999999999999999976 2122223456777777777777666431 0 11223334343322
Q ss_pred eeehhhcccccc--------------ccCCCcEEEEEeCch---------hhhhhcC-CceeEccCCChHHHHHHHHHHh
Q 004021 258 RIDLTELGVPLQ--------------MLNAGFKIVLKTRSA---------GVCDQMD-SKNLEVYSLAHDEAWKLFQEMI 313 (779)
Q Consensus 258 ~~~ld~l~~~~~--------------~~~~gs~IivTTR~~---------~va~~~~-~~~~~l~~L~~~~a~~Lf~~~a 313 (779)
++.+|++...-. ....|..||+|+... .+...+. .-.+.+++++.++-.+++.+++
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 455666532110 013456788887642 2233333 5677899999999999999988
Q ss_pred hccCCCCCCChHHHHHHHHHHhCCChhHHHHHH
Q 004021 314 ERSTLDSHTSIPELAETLARECGRLPLALKTVG 346 (779)
Q Consensus 314 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g 346 (779)
...+.. ..--+++..-|++.++|.|-.+..+.
T Consensus 289 ~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 289 KNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 654311 11226788999999999998777554
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=4.5e-05 Score=80.40 Aligned_cols=78 Identities=27% Similarity=0.481 Sum_probs=56.5
Q ss_pred ccCCccEEEcccccccccccCcc---cccccccccccccchhhcccccCceeeecCC-cccccchhhccCccCcEeeccC
Q 004021 493 EWEGAKRISLMANEIESLSEIPT---LLSLRRNDSLTELPSRISSLVSLHHLDLSLT-HIRGLPQELKALEKLRYLNLEY 568 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~l~~~~~---lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~~~~L~~L~~L~l~~ 568 (779)
.+..+++|++++|.+..+|..|. -|.+++|..++.+|..+. .+|++|++++| .+..+|.. |++|+++.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~ 121 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKG 121 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCC
Confidence 45678899999988888876554 488888767888887663 68999999988 78888864 55555554
Q ss_pred C--cCCCCCchh
Q 004021 569 T--HYLSIIPHQ 578 (779)
Q Consensus 569 ~--~~l~~lp~~ 578 (779)
+ ..+..+|.+
T Consensus 122 n~~~~L~~LPss 133 (426)
T PRK15386 122 SATDSIKNVPNG 133 (426)
T ss_pred CCCcccccCcch
Confidence 3 235666664
No 77
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.74 E-value=0.0021 Score=74.28 Aligned_cols=162 Identities=22% Similarity=0.302 Sum_probs=88.8
Q ss_pred ccccchhhhHH---HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCC
Q 004021 155 QTIVGQEKLLP---RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFS 231 (779)
Q Consensus 155 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~ 231 (779)
.+|+|.+..+. .+.+.+..+ ....+.++|++|+||||||+.+++.. ...|. .+......+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~-----~lna~~~~i------- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHT---RAHFS-----SLNAVLAGV------- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHh---cCcce-----eehhhhhhh-------
Confidence 45789888774 455555554 56677899999999999999999876 34442 111110000
Q ss_pred cchhhhhcchhhHHHHHHHhh--CCCcceeehhhcccc--------ccccCCCcEEEEE--eCch--hhhhhc-C-Ccee
Q 004021 232 EDKKWKEKSLQDKAVDISSIL--SPKKFRIDLTELGVP--------LQMLNAGFKIVLK--TRSA--GVCDQM-D-SKNL 295 (779)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~L--~~kr~~~~ld~l~~~--------~~~~~~gs~IivT--TR~~--~va~~~-~-~~~~ 295 (779)
.+..+......+.+ .+++..+.+|++... ++....|+.++|+ |.+. .+.... . ...+
T Consensus 91 -------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~ 163 (725)
T PRK13341 91 -------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLF 163 (725)
T ss_pred -------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccce
Confidence 00111111121111 123334555555211 1112345555553 4442 122222 1 4678
Q ss_pred EccCCChHHHHHHHHHHhhccC----CCCCCChHHHHHHHHHHhCCChh
Q 004021 296 EVYSLAHDEAWKLFQEMIERST----LDSHTSIPELAETLARECGRLPL 340 (779)
Q Consensus 296 ~l~~L~~~~a~~Lf~~~a~~~~----~~~~~~l~~~~~~I~~~c~glPL 340 (779)
.+++|+.++...++.+.+.... .....--++....|++.+.|..-
T Consensus 164 ~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 164 RLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 9999999999999988765210 00111125667888888888543
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00046 Score=76.82 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=97.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-C-CCCEEEEEEe-chHHHHHHHH----
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-H-NFDVVIWAAV-QTFQDDIGKR---- 227 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~-~F~~~~wv~v-~~i~~~i~~~---- 227 (779)
.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+...-.. . ......--|- -.....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc
Confidence 468999999999999998762 235678999999999999999988762100 0 0000000000 0111111110
Q ss_pred -hCCCcchhhhhcchhhHHHHHHHhhCCCcc-eeehhhcc-----------ccccccCCCcE-EEEEeCchhhhhhcC--
Q 004021 228 -IGFSEDKKWKEKSLQDKAVDISSILSPKKF-RIDLTELG-----------VPLQMLNAGFK-IVLKTRSAGVCDQMD-- 291 (779)
Q Consensus 228 -l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-~~~ld~l~-----------~~~~~~~~gs~-IivTTR~~~va~~~~-- 291 (779)
+..+........+..++.+.+...-...+| ...+|++. ..+..-..+++ |++||....+...+-
T Consensus 95 viEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 95 YIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred ceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 000000000011111111111111112223 23333321 11111123444 555555566654433
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
...|.++.++.++..+.+.+.+...+...+ .+..+.|++.++|.|.-...
T Consensus 175 Cq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 175 CLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 678999999999999999888765442221 45668899999998865443
No 79
>PRK05642 DNA replication initiation factor; Validated
Probab=97.72 E-value=0.0016 Score=65.24 Aligned_cols=140 Identities=17% Similarity=0.272 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcc
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKF 257 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 257 (779)
...+.|+|..|+|||.|++++++.. . ..-..++|++..++..... .+.+.+++-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~~~~~~~~---------------------~~~~~~~~~d- 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLAELLDRGP---------------------ELLDNLEQYE- 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHHHHHhhhH---------------------HHHHhhhhCC-
Confidence 3678999999999999999999876 2 2224567777744432210 0111111111
Q ss_pred eeehhhccc-------------ccc-ccCCCcEEEEEeCchh--h-------hhhcC-CceeEccCCChHHHHHHHHHHh
Q 004021 258 RIDLTELGV-------------PLQ-MLNAGFKIVLKTRSAG--V-------CDQMD-SKNLEVYSLAHDEAWKLFQEMI 313 (779)
Q Consensus 258 ~~~ld~l~~-------------~~~-~~~~gs~IivTTR~~~--v-------a~~~~-~~~~~l~~L~~~~a~~Lf~~~a 313 (779)
.+.+|++.. .+. ....|..||+||+... . .+.+. ...+++++++.++-.+.++.++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 112222210 010 0124678889887522 1 22222 4678999999999999999776
Q ss_pred hccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 314 ERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 314 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
......-+ +++..-|++++.|-.-++..+
T Consensus 180 ~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 180 SRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 54432222 567777888887766555433
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.72 E-value=5.2e-06 Score=91.10 Aligned_cols=103 Identities=27% Similarity=0.425 Sum_probs=82.7
Q ss_pred ccccCCccEEEccccccccccc-Ccc-----cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEe
Q 004021 491 VKEWEGAKRISLMANEIESLSE-IPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYL 564 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~-~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L 564 (779)
+..+.++..+++.+|.|..+.. ... .|+|++| .|..+. .+..|+.|+.|++.+|.|+.++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 5566789999999999988776 332 3999999 888875 5778888999999999998886 35669999999
Q ss_pred eccCCcCCCCCch-hhhcCCccCcEeeeccccCCC
Q 004021 565 NLEYTHYLSIIPH-QLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 565 ~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 598 (779)
++++| .+..+.. . ...+.+|+.+.+.+|.+..
T Consensus 168 ~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 168 DLSYN-RIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred cCCcc-hhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 99999 5666766 2 3688899999999887664
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0003 Score=78.10 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=100.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcch
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDK 234 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~ 234 (779)
.+++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.. .-...+...+|.|... ..+..........
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc--~~i~~~~h~dv~e 89 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESC--LAVRRGAHPDVLE 89 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhh--HHHhcCCCCceEE
Confidence 458999999999988888762 33567999999999999999999877 2222233344444311 1111000000000
Q ss_pred -h-hhhcchhhHHHHHHHhhC-----CCcceeehhhcc-----------ccccccCCCcEEEEEe-CchhhhhhcC--Cc
Q 004021 235 -K-WKEKSLQDKAVDISSILS-----PKKFRIDLTELG-----------VPLQMLNAGFKIVLKT-RSAGVCDQMD--SK 293 (779)
Q Consensus 235 -~-~~~~~~~~~~~~l~~~L~-----~kr~~~~ld~l~-----------~~~~~~~~gs~IivTT-R~~~va~~~~--~~ 293 (779)
. ......++ +..+.+.+. +++-.+++|+.. ..+......+.+|++| ....+...+. ..
T Consensus 90 l~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 90 IDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred ecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 0 00011111 112222221 222244444431 1112222344545444 4444433333 57
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
.+++.+++.++....+.+.+...+... -++....|++.++|.+--+.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 889999999999999999886654322 25678899999999885443
No 82
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.70 E-value=4.1e-05 Score=73.89 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=33.4
Q ss_pred cccchhhhHHHHHHHHhc-cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITD-QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|+||+++++++...+.. .....+.+.|+|.+|+|||+|.++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999942 23456899999999999999999999888
No 83
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=1.6e-06 Score=94.33 Aligned_cols=128 Identities=26% Similarity=0.273 Sum_probs=97.6
Q ss_pred CccccccCCccEEEcccccccccccCcc------cccccccccccccchhhcccccCceeeecCCcccccchh-hccCcc
Q 004021 488 APKVKEWEGAKRISLMANEIESLSEIPT------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQE-LKALEK 560 (779)
Q Consensus 488 ~~~~~~~~~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~ 560 (779)
+.+...|.++...+++.|.+..+..... -|+|++| .+.+.- .+..|++|++|||++|.+..+|.- ...+ +
T Consensus 157 ~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 157 ISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-K 233 (1096)
T ss_pred cccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-h
Confidence 3444567888889999888776655443 3999999 777765 788899999999999999998863 2333 3
Q ss_pred CcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecc
Q 004021 561 LRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSS 634 (779)
Q Consensus 561 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 634 (779)
|+.|.+++| .++.+-. +.+|.+|+.||+++|-+.+ ...+.-|..|..|+.|.+.+|..
T Consensus 234 L~~L~lrnN-~l~tL~g--ie~LksL~~LDlsyNll~~-------------hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 234 LQLLNLRNN-ALTTLRG--IENLKSLYGLDLSYNLLSE-------------HSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred heeeeeccc-HHHhhhh--HHhhhhhhccchhHhhhhc-------------chhhhHHHHHHHHHHHhhcCCcc
Confidence 999999999 6787765 8999999999999987775 33444456667777777777654
No 84
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.67 E-value=0.00026 Score=76.23 Aligned_cols=48 Identities=27% Similarity=0.316 Sum_probs=39.0
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|+++.++++.+.+... -...+-+.++|++|+|||++|+++++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 46899999999999887431 0124568999999999999999999877
No 85
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.001 Score=74.28 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=97.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCC---
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGF--- 230 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~--- 230 (779)
..++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.. .-....+.. .|- -...+.|...-..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~~--pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTST--PCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCCC--CCccCHHHHHHhcCCCCceE
Confidence 568999999999999998762 24678999999999999999998876 111101000 000 0111111110000
Q ss_pred --CcchhhhhcchhhHHHHHHHh-hCCCcceeehhhcc-----------ccccccCCCcEEEEEeCc-hhhhhh-cC-Cc
Q 004021 231 --SEDKKWKEKSLQDKAVDISSI-LSPKKFRIDLTELG-----------VPLQMLNAGFKIVLKTRS-AGVCDQ-MD-SK 293 (779)
Q Consensus 231 --~~~~~~~~~~~~~~~~~l~~~-L~~kr~~~~ld~l~-----------~~~~~~~~gs~IivTTR~-~~va~~-~~-~~ 293 (779)
.........+..+....+... ..+++-...+|++- ..+.....+.++|++|.+ ..+... .. ..
T Consensus 91 EIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq 170 (702)
T PRK14960 91 EIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCL 170 (702)
T ss_pred EecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhh
Confidence 000000000111111111111 11222133333321 111122245567776655 333222 22 57
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
.+++.+++.++..+.+.+.+...+...+ .+....|++.++|-+-.+.
T Consensus 171 ~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 171 QFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred eeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 8899999999999999888766543222 5667889999999775444
No 86
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00092 Score=71.76 Aligned_cols=181 Identities=13% Similarity=0.160 Sum_probs=95.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCE-EEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDV-VIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~-~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
.+++|.+..++.+.+.+..+. -...+.++|..|+||||+|+.+++.. .-...... -+.. -.....+.........
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~~~pc~~--c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGITSNPCRK--CIICKEIEKGLCLDLI 91 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCC--CHHHHHHhcCCCCceE
Confidence 568999999999999887662 34567899999999999999999876 21111100 0000 0011111111000000
Q ss_pred h-hh-hhcchhhHHHHHHHhhCC----Ccc-eeehhhcc-----------ccccccCCCcEEEEEeCc-hhhhhhcC--C
Q 004021 234 K-KW-KEKSLQDKAVDISSILSP----KKF-RIDLTELG-----------VPLQMLNAGFKIVLKTRS-AGVCDQMD--S 292 (779)
Q Consensus 234 ~-~~-~~~~~~~~~~~l~~~L~~----kr~-~~~ld~l~-----------~~~~~~~~gs~IivTTR~-~~va~~~~--~ 292 (779)
+ .. .....++ ...+.+.+.. .++ ...+|++. ..+.......++|++|.+ ..+..... .
T Consensus 92 ~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc 170 (363)
T PRK14961 92 EIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRC 170 (363)
T ss_pred EecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhc
Confidence 0 00 0001111 1122222111 111 22233221 111122245566666544 44443332 5
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
..+++.+++.++..+.+.+.+...+... -++.+..|++.++|.|-.+.
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 7889999999999998888775543212 24667889999999886443
No 87
>PLN03025 replication factor C subunit; Provisional
Probab=97.62 E-value=0.00069 Score=71.44 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=91.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-------chHHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-------QTFQDDIGKR 227 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-------~~i~~~i~~~ 227 (779)
.+++|.++.++.|.+++..+ ..+-+-++|.+|+||||+|+.+++... ...|.. .++.. .+..+.+.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~-~~~eln~sd~~~~~~vr~~i~~ 87 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELL--GPNYKE-AVLELNASDDRGIDVVRNKIKM 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHh--cccCcc-ceeeecccccccHHHHHHHHHH
Confidence 45799998888888877765 455577999999999999999998761 122221 11111 0111111111
Q ss_pred hCCCcchhhhhcchhhHHHHHHHhh-CCCcceeehhhccc-----------cccccCCCcEEEEEeCc-hhhhhhcC--C
Q 004021 228 IGFSEDKKWKEKSLQDKAVDISSIL-SPKKFRIDLTELGV-----------PLQMLNAGFKIVLKTRS-AGVCDQMD--S 292 (779)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~~~~ld~l~~-----------~~~~~~~gs~IivTTR~-~~va~~~~--~ 292 (779)
+... ...+ .++.-.+.+|++.. .+......+++++++.. ..+..... .
T Consensus 88 ~~~~-----------------~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 88 FAQK-----------------KVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHhc-----------------cccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 1000 0000 01111222333211 01112345667776654 23322222 4
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLA 341 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLa 341 (779)
..++++++++++....+...+...+..-+ .+....|++.++|-.-.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 67899999999999999888766543222 56778999999986533
No 88
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.62 E-value=0.00092 Score=70.82 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=92.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-------chHHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-------QTFQDDIGKR 227 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-------~~i~~~i~~~ 227 (779)
.+++|+++.++.+..++..+ ..+.+.++|.+|+||||+|+.+++... ...+.. .++.+ .....+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~-~~i~~~~~~~~~~~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELY--GEDWRE-NFLELNASDERGIDVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHc--CCcccc-ceEEeccccccchHHHHHHHHH
Confidence 45899999999999998765 455679999999999999999998762 112211 12222 0111111111
Q ss_pred hCCCcchhhhhcchhhHHHHHHHhhCCCcceeehhhc-----------cccccccCCCcEEEEEeCc-hhhhhhcC--Cc
Q 004021 228 IGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLTEL-----------GVPLQMLNAGFKIVLKTRS-AGVCDQMD--SK 293 (779)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l-----------~~~~~~~~~gs~IivTTR~-~~va~~~~--~~ 293 (779)
+... .+. . -.+++ .+.+|++ ...+......+.+|+++.. ..+..... ..
T Consensus 92 ~~~~-~~~-~--------------~~~~~-vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 92 FART-APV-G--------------GAPFK-IIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHhc-CCC-C--------------CCCce-EEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 1000 000 0 00011 1111111 0111112234567766643 22222221 45
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
.+++.+++.++....+...+...+..-+ ++....+++.++|.+--+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 7899999999999999888765442222 5678899999999776543
No 89
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.002 Score=70.83 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCc
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD-VVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKK 256 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~-~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr 256 (779)
..-+.|+|.+|+|||+||+++++.. . +.+.+ .++|++..++...+...+... ... .+.+.+..+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l-~-~~~~~~~v~yi~~~~f~~~~~~~~~~~--------~~~----~f~~~~~~~~ 195 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV-V-QNEPDLRVMYITSEKFLNDLVDSMKEG--------KLN----EFREKYRKKV 195 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH-H-HhCCCCeEEEEEHHHHHHHHHHHHhcc--------cHH----HHHHHHHhcC
Confidence 4469999999999999999999987 2 22333 567788777777776655422 111 1222222222
Q ss_pred ceeehhhccccc-------------c-ccCCCcEEEEEeCc-hh----h----hhhcC-CceeEccCCChHHHHHHHHHH
Q 004021 257 FRIDLTELGVPL-------------Q-MLNAGFKIVLKTRS-AG----V----CDQMD-SKNLEVYSLAHDEAWKLFQEM 312 (779)
Q Consensus 257 ~~~~ld~l~~~~-------------~-~~~~gs~IivTTR~-~~----v----a~~~~-~~~~~l~~L~~~~a~~Lf~~~ 312 (779)
-.+.+|++.... . ....|..||+||.. .. + ...+. ...+.+++.+.+.-..++.+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 244555543111 0 01245678888852 21 1 12222 457789999999999999988
Q ss_pred hhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 313 IERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 313 a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
+.......+ +++..-|++.+.|..-.+.
T Consensus 276 ~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 276 LEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHhcCCCCC---HHHHHHHHhccccCHHHHH
Confidence 765432222 5678888888877554443
No 90
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.61 E-value=9.6e-06 Score=81.39 Aligned_cols=175 Identities=20% Similarity=0.117 Sum_probs=87.3
Q ss_pred cccccCceeeecCCcccc-----cchhhccCccCcEeeccCCcCCCCCchhh-------------hcCCccCcEeeeccc
Q 004021 533 SSLVSLHHLDLSLTHIRG-----LPQELKALEKLRYLNLEYTHYLSIIPHQL-------------ISGFLKLEVLRLLEC 594 (779)
Q Consensus 533 ~~L~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~l~~~~~l~~lp~~~-------------i~~L~~L~~L~l~~~ 594 (779)
...++|++||||.|.+.. +-.-+..++.|++|+|.+| .++..-.+. ++.-++|+++....|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 344567777777774432 2233566677777777777 333222211 223345666666666
Q ss_pred cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccc---------cccCCCCCcccC--------------ccc
Q 004021 595 GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLA---------VQKFFKYPKLDL--------------TWL 651 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~---------~~~~~~L~~L~~--------------~~l 651 (779)
+... .........++..+.|+.+.+..|++.. +..+++|+.|++ ..+
T Consensus 168 rlen----------~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 168 RLEN----------GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred cccc----------ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 5543 1112233334444555555555444321 123333333311 124
Q ss_pred ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcc-----ccCCCCCCCCccEEee
Q 004021 652 VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKS-----IYPNPLHFPKLKKIGV 726 (779)
Q Consensus 652 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l 726 (779)
..+++|+.|++++|..-..-- ..+ .+ ..-..+|+|+.|.+.++. ++. +.......|.|..|++
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga-----~a~---~~---al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGA-----IAF---VD---ALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNL 305 (382)
T ss_pred cccchheeecccccccccccH-----HHH---HH---HHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcC
Confidence 456778888888775422110 000 00 112347888888887742 221 1123345788888888
Q ss_pred eCCC
Q 004021 727 YGCP 730 (779)
Q Consensus 727 ~~c~ 730 (779)
++|.
T Consensus 306 ngN~ 309 (382)
T KOG1909|consen 306 NGNR 309 (382)
T ss_pred Cccc
Confidence 8774
No 91
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.58 E-value=0.00018 Score=72.08 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
....++|+|.+|+|||||++.+++.. .. .+|+.++|+.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~v 53 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLL 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEE
Confidence 44789999999999999999999988 43 48999999996
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00058 Score=73.99 Aligned_cols=180 Identities=11% Similarity=0.062 Sum_probs=97.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEechHHHHHHHHhCCCc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNR-GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD-VVIWAAVQTFQDDIGKRIGFSE 232 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~-~~~wv~v~~i~~~i~~~l~~~~ 232 (779)
.+++|.+..+..|..++..+ .+ ..+.++|..|+||||+|+.+++... -..... ..+..| .-...+........
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~~~pCg~C--~sC~~i~~g~~~dv 92 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIGNEPCNEC--TSCLEITKGISSDV 92 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccCccccCCC--cHHHHHHccCCccc
Confidence 45899999999999998877 44 4688999999999999999998762 111000 001111 11222222111100
Q ss_pred ---c--hhhhhcchhhHHHHHHHhhCCCcc-eeehhhcc-----------ccccccCCCcEE-EEEeCchhhhhhcC--C
Q 004021 233 ---D--KKWKEKSLQDKAVDISSILSPKKF-RIDLTELG-----------VPLQMLNAGFKI-VLKTRSAGVCDQMD--S 292 (779)
Q Consensus 233 ---~--~~~~~~~~~~~~~~l~~~L~~kr~-~~~ld~l~-----------~~~~~~~~gs~I-ivTTR~~~va~~~~--~ 292 (779)
+ ......+..+....+...-...+| ...+|++- ..+......... +.||....+..... .
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 0 000011112222222211112233 33334331 111111123333 45555555544433 5
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
..|.+.+++.++..+.+.+.+...+... -.+....|++.++|.+--+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHH
Confidence 6799999999999998888876544222 2567889999999987543
No 93
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0039 Score=66.28 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=113.6
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIGK 226 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~~ 226 (779)
..+.+|+++++++...|..- ...+.-+.|+|.+|+|||+.++.|.+.........+ +++|+. .+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 44899999999999988752 223334899999999999999999998832222233 566666 678888998
Q ss_pred HhCCCcchhhhhcchhhHHHHHHHhhCC--Ccceeehhhcccccc-----------cc-CCCcEEEE--EeCchhh----
Q 004021 227 RIGFSEDKKWKEKSLQDKAVDISSILSP--KKFRIDLTELGVPLQ-----------ML-NAGFKIVL--KTRSAGV---- 286 (779)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~~~~ld~l~~~~~-----------~~-~~gs~Iiv--TTR~~~v---- 286 (779)
.++..+. ...+..+....+.+.+.. +.+.+++|++..... .. ..+++|+| .+.+..+
T Consensus 96 ~~~~~p~---~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 96 KLGKVPL---TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HcCCCCC---CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 8863322 234455666667776654 455666666532211 11 12454443 4444332
Q ss_pred ----hhhcCCceeEccCCChHHHHHHHHHHhhc---cCCCCCCChHHHHHHHHHHhC-CChhHHHHH
Q 004021 287 ----CDQMDSKNLEVYSLAHDEAWKLFQEMIER---STLDSHTSIPELAETLARECG-RLPLALKTV 345 (779)
Q Consensus 287 ----a~~~~~~~~~l~~L~~~~a~~Lf~~~a~~---~~~~~~~~l~~~~~~I~~~c~-glPLai~~~ 345 (779)
....+...+..+|-+.+|-...+..++.. .. ..+++.-+.+..++..-+ -.-.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 23333345778888899999998887643 22 223333344444444444 455666553
No 94
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.56 E-value=0.0033 Score=68.86 Aligned_cols=149 Identities=15% Similarity=0.237 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcc
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKF 257 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 257 (779)
...+.|+|..|+|||+|++++++.. .....=..+++++..++...+...+... . ...+.+.+++-.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~d- 201 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSSEKFTNDFVNALRNN--------K----MEEFKEKYRSVD- 201 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEHHHHHHHHHHHHHcC--------C----HHHHHHHHHhCC-
Confidence 4568899999999999999999987 2221113466777766666665554321 1 112233333222
Q ss_pred eeehhhccccc-------------c-ccCCCcEEEEEeCch--h-------hhhhcC-CceeEccCCChHHHHHHHHHHh
Q 004021 258 RIDLTELGVPL-------------Q-MLNAGFKIVLKTRSA--G-------VCDQMD-SKNLEVYSLAHDEAWKLFQEMI 313 (779)
Q Consensus 258 ~~~ld~l~~~~-------------~-~~~~gs~IivTTR~~--~-------va~~~~-~~~~~l~~L~~~~a~~Lf~~~a 313 (779)
.+.+|++...- . ....|..||+||... . +...+. ...+.+++.+.++-..++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 44455552210 0 012456788888642 1 222222 3568999999999999999988
Q ss_pred hccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 314 ERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 314 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
.......+ +++..-|++.+.|.+-.+.
T Consensus 282 ~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 282 EEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 76442222 5777888888888765444
No 95
>PF13173 AAA_14: AAA domain
Probab=97.56 E-value=0.0003 Score=63.21 Aligned_cols=110 Identities=27% Similarity=0.304 Sum_probs=62.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcc
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKF 257 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 257 (779)
.+++.|.|+.|+|||||+++++++. . ....+++++..+....-.. .. +..+.+.+....+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA-------------DP-DLLEYFLELIKPGKK 63 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh-------------hh-hhHHHHHHhhccCCc
Confidence 3789999999999999999999887 2 3455667766221110000 00 012222222222333
Q ss_pred eeehhhc---------cccccccCCCcEEEEEeCchhhhhh-----c-C-CceeEccCCChHHH
Q 004021 258 RIDLTEL---------GVPLQMLNAGFKIVLKTRSAGVCDQ-----M-D-SKNLEVYSLAHDEA 305 (779)
Q Consensus 258 ~~~ld~l---------~~~~~~~~~gs~IivTTR~~~va~~-----~-~-~~~~~l~~L~~~~a 305 (779)
.+.+|++ ...+.+..+..+|++|+.+...... . + ...+++.||+..|-
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3444443 1222333456899999988665422 1 2 45678999987763
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0044 Score=61.14 Aligned_cols=176 Identities=16% Similarity=0.137 Sum_probs=97.4
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIG 225 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~ 225 (779)
.+|+|.++-++++.=.+... +..+--|-++|++|.||||||.-+++.. . ..+. ++- ..=+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-g--vn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-G--VNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-c--CCeE----ecccccccChhhHHHHH
Confidence 56899998888887776543 3466789999999999999999999987 2 2221 111 11122333
Q ss_pred HHhCCCcchhhhhcchhhHH----HHHHHhhCCCcceeehhh------ccccccccCCCcEEEEEeCchhhhhhcC---C
Q 004021 226 KRIGFSEDKKWKEKSLQDKA----VDISSILSPKKFRIDLTE------LGVPLQMLNAGFKIVLKTRSAGVCDQMD---S 292 (779)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~----~~l~~~L~~kr~~~~ld~------l~~~~~~~~~gs~IivTTR~~~va~~~~---~ 292 (779)
..+... + ..-.+....+. +.+.-.+++-+..+.... +...++ +=+-|=.|||.-.+..-+. .
T Consensus 99 t~Le~~-D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp---pFTLIGATTr~G~lt~PLrdRFG 173 (332)
T COG2255 99 TNLEEG-D-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP---PFTLIGATTRAGMLTNPLRDRFG 173 (332)
T ss_pred hcCCcC-C-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC---CeeEeeeccccccccchhHHhcC
Confidence 333221 0 00000011111 111111222111111100 011111 1122346898765544433 3
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
...+++--+.+|-.+...+.+..-....+ ++.+.+|+++..|-|--+.-+
T Consensus 174 i~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 174 IIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred CeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHH
Confidence 46688889999999999888755443332 577899999999999654433
No 97
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0014 Score=75.73 Aligned_cols=182 Identities=15% Similarity=0.112 Sum_probs=97.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCE-EEEEEechHHHHHHHHhC---
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNR-GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDV-VIWAAVQTFQDDIGKRIG--- 229 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~-~~wv~v~~i~~~i~~~l~--- 229 (779)
..+||.+..++.|.+++..+ ++ ..+.++|..|+||||+|+.+++... -....+. -+-.| .....|.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C--~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVC--SSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCc--hHHHHHhcCCCceE
Confidence 56899999999999998776 44 4568999999999999999998762 1111110 00000 11111111100
Q ss_pred --CCcchhhhhcchhhHHHHHHHh-hCCCcceeehhhccc-----------cccccCCCcEEEE-EeCchhhhhhcC--C
Q 004021 230 --FSEDKKWKEKSLQDKAVDISSI-LSPKKFRIDLTELGV-----------PLQMLNAGFKIVL-KTRSAGVCDQMD--S 292 (779)
Q Consensus 230 --~~~~~~~~~~~~~~~~~~l~~~-L~~kr~~~~ld~l~~-----------~~~~~~~gs~Iiv-TTR~~~va~~~~--~ 292 (779)
.............++...+... ..+++-.+.+|++-. .+-......++|+ ||....+...+- .
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh
Confidence 0000000011112222222211 122222344444311 1111123445554 444455543322 5
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
..|++.+|+.++....+.+.+...... --.+....|++.++|.|--+..
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 789999999999999998877554322 1256788999999998854443
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.52 E-value=0.0036 Score=69.42 Aligned_cols=172 Identities=15% Similarity=0.237 Sum_probs=100.1
Q ss_pred ccccchhhh--HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCc
Q 004021 155 QTIVGQEKL--LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSE 232 (779)
Q Consensus 155 ~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~ 232 (779)
..++|.... ...+..+.........-+.|+|..|+|||+|++++++.. .....--.+++++...+...+...+...
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~~~~~~~~~~~~~~~- 200 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTSEKFTNDFVNALRNN- 200 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHHHHHHHHHcC-
Confidence 334665432 233333333322234568999999999999999999987 2111123466777766666665555321
Q ss_pred chhhhhcchhhHHHHHHHhhCCCcceeehhhcccc----------cc----ccCCCcEEEEEeCchh---------hhhh
Q 004021 233 DKKWKEKSLQDKAVDISSILSPKKFRIDLTELGVP----------LQ----MLNAGFKIVLKTRSAG---------VCDQ 289 (779)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~----------~~----~~~~gs~IivTTR~~~---------va~~ 289 (779)
.. ..+.+.++.- -++.+|++... +. ....|..||+||.... +...
T Consensus 201 -------~~----~~~~~~~~~~-dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SR 268 (450)
T PRK00149 201 -------TM----EEFKEKYRSV-DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSR 268 (450)
T ss_pred -------cH----HHHHHHHhcC-CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhH
Confidence 11 2223333321 14455555211 00 0124556888886531 2223
Q ss_pred cC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 290 MD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 290 ~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
+. ...+++++.+.++-..++.+.+.......+ +++..-|++.+.|..-.+.
T Consensus 269 l~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 269 FEWGLTVDIEPPDLETRIAILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred hcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 33 457899999999999999998865432222 5778888888888766443
No 99
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=2.6e-05 Score=89.40 Aligned_cols=122 Identities=25% Similarity=0.228 Sum_probs=83.5
Q ss_pred chhhc-ccccCceeeecCCccc--ccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC
Q 004021 529 PSRIS-SLVSLHHLDLSLTHIR--GLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN 605 (779)
Q Consensus 529 p~~i~-~L~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 605 (779)
|..++ -|++|+.|.+++-.+. ++-.-..++++|..||++++ .++.+ .+ +++|+||+.|.+.+-.+..
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G-IS~LknLq~L~mrnLe~e~------- 209 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG-ISRLKNLQVLSMRNLEFES------- 209 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HH-HhccccHHHHhccCCCCCc-------
Confidence 44554 4689999999886442 24444678889999999999 67888 44 9999999999998766653
Q ss_pred ccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccc
Q 004021 606 VLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEME 669 (779)
Q Consensus 606 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~ 669 (779)
...+.+|-+|++|+.|++|........ +....-+..-..||+|+.|+.|+....+
T Consensus 210 ------~~~l~~LF~L~~L~vLDIS~~~~~~~~---~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 210 ------YQDLIDLFNLKKLRVLDISRDKNNDDT---KIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ------hhhHHHHhcccCCCeeeccccccccch---HHHHHHHHhcccCccccEEecCCcchhH
Confidence 456778889999999999854322111 0000011222347889999888754433
No 100
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.45 E-value=3.1e-05 Score=77.82 Aligned_cols=187 Identities=18% Similarity=0.136 Sum_probs=110.4
Q ss_pred cchhhcccccCceeeecCC----cccccchh-------hccCccCcEeeccCCcCCCCCchh---hhcCCccCcEeeecc
Q 004021 528 LPSRISSLVSLHHLDLSLT----HIRGLPQE-------LKALEKLRYLNLEYTHYLSIIPHQ---LISGFLKLEVLRLLE 593 (779)
Q Consensus 528 lp~~i~~L~~L~~L~L~~~----~i~~lp~~-------~~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~ 593 (779)
+-+.+.+.++|+.-+++.- -..++|+. +-..++|++|+||.|-.-..-+++ .+.++++|++|.+.+
T Consensus 50 i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N 129 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNN 129 (382)
T ss_pred HHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhc
Confidence 4455667778888888753 12345554 456679999999999554343433 367889999999999
Q ss_pred ccCCCccccc-CCccCCCchhhHHhhcCCCCCCceeEEeecccc---------cccCCCCCccc-------C-------c
Q 004021 594 CGSEGVTKEE-GNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLA---------VQKFFKYPKLD-------L-------T 649 (779)
Q Consensus 594 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~---------~~~~~~L~~L~-------~-------~ 649 (779)
|++...--.. +.-+-. -......++-++|+.+....|.... +..++.|+.+. + .
T Consensus 130 ~Glg~~ag~~l~~al~~--l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~e 207 (382)
T KOG1909|consen 130 CGLGPEAGGRLGRALFE--LAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAE 207 (382)
T ss_pred CCCChhHHHHHHHHHHH--HHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHH
Confidence 9876410000 000000 0012223455788888888765532 24455666551 1 2
Q ss_pred ccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc-----C-CCCCCCCccE
Q 004021 650 WLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY-----P-NPLHFPKLKK 723 (779)
Q Consensus 650 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~-~~~~l~~L~~ 723 (779)
.+.++|+|+.|+|..|.....--. .+. ..+..||+|+.|++.+|. ++.=- . -....|+|+.
T Consensus 208 al~~~~~LevLdl~DNtft~egs~--------~La----kaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~v 274 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSV--------ALA----KALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEV 274 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHH--------HHH----HHhcccchheeecccccc-cccccHHHHHHHHhccCCCCce
Confidence 345788888888888654322100 000 245678888889888873 32211 0 1224788888
Q ss_pred EeeeCC
Q 004021 724 IGVYGC 729 (779)
Q Consensus 724 L~l~~c 729 (779)
|.+.+|
T Consensus 275 l~l~gN 280 (382)
T KOG1909|consen 275 LELAGN 280 (382)
T ss_pred eccCcc
Confidence 888776
No 101
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0027 Score=69.99 Aligned_cols=180 Identities=16% Similarity=0.169 Sum_probs=93.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccccC-CCCEEEEEEechHHHHHHH------
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNR-GIIGLYGIGGVGKTTLLKQVNNNFCHQQH-NFDVVIWAAVQTFQDDIGK------ 226 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLA~~v~~~~~~~~~-~F~~~~wv~v~~i~~~i~~------ 226 (779)
.+++|.+.....|...+..+ .+ ..+-++|++|+||||+|+.+++....... .+..+ -. ......+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc-~~--c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC-NE--CRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC-cc--cHHHHHHhcCCCCcc
Confidence 56899998888888877766 44 56889999999999999999887511000 00000 00 000001100
Q ss_pred -HhCCCcchhhhhcchhhHHHHHHHhhC-----CCcceeehhhc-----------cccccccCCCcEEEE-EeCchhhhh
Q 004021 227 -RIGFSEDKKWKEKSLQDKAVDISSILS-----PKKFRIDLTEL-----------GVPLQMLNAGFKIVL-KTRSAGVCD 288 (779)
Q Consensus 227 -~l~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~~~~ld~l-----------~~~~~~~~~gs~Iiv-TTR~~~va~ 288 (779)
.+... .....++ ...+.+... +++-.+.+|++ ...+........+|+ ||....+..
T Consensus 89 ~el~aa-----~~~gid~-iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~ 162 (472)
T PRK14962 89 IELDAA-----SNRGIDE-IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPP 162 (472)
T ss_pred EEEeCc-----ccCCHHH-HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhH
Confidence 00000 0000111 111111111 11112223322 111111122333333 443344544
Q ss_pred hcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCC-ChhHHHHHHHH
Q 004021 289 QMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGR-LPLALKTVGRA 348 (779)
Q Consensus 289 ~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~~g~~ 348 (779)
... ...+.+.+++.++....+.+.+...+..-+ ++....|++.++| ++.|+..+-.+
T Consensus 163 ~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 163 TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred HHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333 568899999999999998888755432222 5667888988865 56776666543
No 102
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.004 Score=69.41 Aligned_cols=173 Identities=15% Similarity=0.113 Sum_probs=95.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc---C---------------CCCEEEEEE
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ---H---------------NFDVVIWAA 216 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~---~---------------~F~~~~wv~ 216 (779)
.+++|.+..++.+...+..+. -...+-++|+.|+||||+|+.+++...... . .|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 458999999999999987652 335678999999999999999987651100 0 111111211
Q ss_pred echHHHHHHHHhCCCcchhhhhcchhhHHHHHHHh-hCCCcceeehhhcc-----------ccccccCCCcEEE-EEeCc
Q 004021 217 VQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSI-LSPKKFRIDLTELG-----------VPLQMLNAGFKIV-LKTRS 283 (779)
Q Consensus 217 v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~~~~ld~l~-----------~~~~~~~~gs~Ii-vTTR~ 283 (779)
.. .. ....+..+....+... ..+++-...+|++. ..+......+.+| +||..
T Consensus 95 aa-------s~--------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 95 AA-------SR--------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred cc-------cc--------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 10 00 0001111222222111 11222233333321 1111122344444 56555
Q ss_pred hhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCCh-hHHHHHH
Q 004021 284 AGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLP-LALKTVG 346 (779)
Q Consensus 284 ~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP-Lai~~~g 346 (779)
..+..... ...+++.+++.++....+.+.+...+... -++....|++.++|-+ -|+..+-
T Consensus 160 ~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 160 HKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred hhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55543332 67889999999998888887665543222 2566788999999965 4554443
No 103
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0026 Score=72.02 Aligned_cols=183 Identities=13% Similarity=0.103 Sum_probs=97.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhC----
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIG---- 229 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~---- 229 (779)
.++||.+..++.|.+.+..+. -...+-++|..|+||||+|+.+++.... ...+... -|- -..+..|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~~~--pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGITAT--PCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCCCC--CCCCCHHHHHHHcCCCCCce
Confidence 568999999999999888762 2345789999999999999999887621 1110000 000 122222221100
Q ss_pred -CCcchhhhhcchhhHHHHHHHh-hCCCcceeehhhcc-----------ccccccCCCcE-EEEEeCchhhhhhcC--Cc
Q 004021 230 -FSEDKKWKEKSLQDKAVDISSI-LSPKKFRIDLTELG-----------VPLQMLNAGFK-IVLKTRSAGVCDQMD--SK 293 (779)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~l~~~-L~~kr~~~~ld~l~-----------~~~~~~~~gs~-IivTTR~~~va~~~~--~~ 293 (779)
..........+..++...+... ..+++-...+|++. ..+-......+ |++||....+...+- ..
T Consensus 92 eidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~ 171 (647)
T PRK07994 92 EIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 (647)
T ss_pred eecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhhe
Confidence 0000000111112222222111 12222233334331 11111123344 445555555543332 67
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
.|.+.+|+.++....+.+.+....... -.+....|++.++|.+--+..
T Consensus 172 ~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 172 QFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 899999999999999988775443222 245678899999997764443
No 104
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00024 Score=66.15 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=23.4
Q ss_pred eeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCC
Q 004021 540 HLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSE 597 (779)
Q Consensus 540 ~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 597 (779)
.+||++|.+..++ .|..+..|++|.+++| .+..+.+..-.-+++|..|.+.+|.+.
T Consensus 46 ~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 46 AIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred eecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchh
Confidence 3444444443332 2334444444444444 344444431122334555555544433
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0032 Score=69.69 Aligned_cols=183 Identities=16% Similarity=0.107 Sum_probs=97.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCE-EEEE-Ee-chHHHHHHHHhCCC
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDV-VIWA-AV-QTFQDDIGKRIGFS 231 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~-~~wv-~v-~~i~~~i~~~l~~~ 231 (779)
.+++|.+..+..+...+..+. -...+-++|..|+||||+|+.+++.. .-...... ..+. |- ......|.......
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAV-NCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh-cCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 457999999999888777662 33578899999999999999999876 21111100 0000 00 11111111110000
Q ss_pred -----cchhhhhcchhhHHHHHHHh-hCCCcceeehhhcc-----------ccccccCCCcEEE-EEeCchhhhhhcC--
Q 004021 232 -----EDKKWKEKSLQDKAVDISSI-LSPKKFRIDLTELG-----------VPLQMLNAGFKIV-LKTRSAGVCDQMD-- 291 (779)
Q Consensus 232 -----~~~~~~~~~~~~~~~~l~~~-L~~kr~~~~ld~l~-----------~~~~~~~~gs~Ii-vTTR~~~va~~~~-- 291 (779)
........+..+..+..... ..+++-...+|++. ..+......+.+| +||+...+.....
T Consensus 99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR 178 (507)
T PRK06645 99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR 178 (507)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc
Confidence 00000011111111111110 11222233444431 1122222344544 4666566655443
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
...+++.+++.++....+.+.+...+...+ .+....|++.++|.+--+
T Consensus 179 c~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 179 CQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred ceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 567899999999999999998876542222 456788999999977444
No 106
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.37 E-value=0.0022 Score=69.64 Aligned_cols=48 Identities=31% Similarity=0.328 Sum_probs=37.9
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.+..+++|.+.+.-. -...+-|.++|.+|+|||++|+++++..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999888876421 1234568899999999999999999976
No 107
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.36 E-value=2.3e-05 Score=67.91 Aligned_cols=78 Identities=29% Similarity=0.494 Sum_probs=42.5
Q ss_pred ccccccccccccchhhcc-cccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 517 LSLRRNDSLTELPSRISS-LVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~-L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
.+|++| .+..+|+.|.. .+.+..|++.+|.|+.+|.++..++.|+.|+++.| .+...|.- |..|.+|-.|+..+|.
T Consensus 58 i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~v-i~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 58 ISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRV-IAPLIKLDMLDSPENA 134 (177)
T ss_pred Eecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHH-HHHHHhHHHhcCCCCc
Confidence 455555 55555555433 23555556666666666655555666666666555 34555553 4445555555555544
Q ss_pred CC
Q 004021 596 SE 597 (779)
Q Consensus 596 ~~ 597 (779)
..
T Consensus 135 ~~ 136 (177)
T KOG4579|consen 135 RA 136 (177)
T ss_pred cc
Confidence 33
No 108
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.00015 Score=50.87 Aligned_cols=36 Identities=36% Similarity=0.573 Sum_probs=30.3
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccch
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ 553 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 553 (779)
|++++| .++.+|..|++|++|++|++++|.|+.+|.
T Consensus 6 L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 6 LDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp EEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred EEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 566777 888898889999999999999999988763
No 109
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.36 E-value=0.03 Score=62.81 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcce
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKFR 258 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~ 258 (779)
..+.|+|..|+|||.|++++++... ....--.+++++..++..++...+... . ...+.+.+++-. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yitaeef~~el~~al~~~--------~----~~~f~~~y~~~D-L 380 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSSEEFTNEFINSIRDG--------K----GDSFRRRYREMD-I 380 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeHHHHHHHHHHHHHhc--------c----HHHHHHHhhcCC-E
Confidence 4589999999999999999999872 111123466777766666665544321 1 111222222211 3
Q ss_pred eehhhcccc-------------cc-ccCCCcEEEEEeCch---------hhhhhcC-CceeEccCCChHHHHHHHHHHhh
Q 004021 259 IDLTELGVP-------------LQ-MLNAGFKIVLKTRSA---------GVCDQMD-SKNLEVYSLAHDEAWKLFQEMIE 314 (779)
Q Consensus 259 ~~ld~l~~~-------------~~-~~~~gs~IivTTR~~---------~va~~~~-~~~~~l~~L~~~~a~~Lf~~~a~ 314 (779)
+.+|++... +. ....|..|||||+.. .+...+. .-.+++++.+.+.-..++.+++.
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 444554211 00 013466799998862 2233333 56789999999999999999886
Q ss_pred ccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 315 RSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 315 ~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
......+ +++..-|++.+.+..-.+
T Consensus 461 ~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 461 QEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred hcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 6543332 566777777776654433
No 110
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.36 E-value=0.00033 Score=63.24 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccc--cCCCCEEEEEEe------chHHHHHHHHhCCCcchhhhhcchhhHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQ--QHNFDVVIWAAV------QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDI 248 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~--~~~F~~~~wv~v------~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l 248 (779)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+ ..+...|+..++.... ...+..++...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK---SRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS---STS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc---ccCCHHHHHHHH
Confidence 45789999999999999999999876210 001345668888 5788889988887622 134556666777
Q ss_pred HHhhCCCcc-eeehhhc
Q 004021 249 SSILSPKKF-RIDLTEL 264 (779)
Q Consensus 249 ~~~L~~kr~-~~~ld~l 264 (779)
.+.+...+. .+++|++
T Consensus 80 ~~~l~~~~~~~lviDe~ 96 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEA 96 (131)
T ss_dssp HHHHHHCTEEEEEEETT
T ss_pred HHHHHhcCCeEEEEeCh
Confidence 777776655 5555554
No 111
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0039 Score=70.48 Aligned_cols=184 Identities=16% Similarity=0.167 Sum_probs=95.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCCEEEEEEe--chHHHHHHHHhCCC
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-HNFDVVIWAAV--QTFQDDIGKRIGFS 231 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~~F~~~~wv~v--~~i~~~i~~~l~~~ 231 (779)
.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+++..--.. ....+...-.. -..+..|...-..+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D 94 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVD 94 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCc
Confidence 458999998999999888762 335678999999999999999977651000 00000000000 11222221100000
Q ss_pred cchhhhhcchhhHHHHHHHhhC-------CCcc-eeehhhcc-----------ccccccCCCcEEEE-EeCchhhhhhcC
Q 004021 232 EDKKWKEKSLQDKAVDISSILS-------PKKF-RIDLTELG-----------VPLQMLNAGFKIVL-KTRSAGVCDQMD 291 (779)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~L~-------~kr~-~~~ld~l~-----------~~~~~~~~gs~Iiv-TTR~~~va~~~~ 291 (779)
-...+.. ....++.+++.+. ..+| ...+|++. ..+.......++|+ ||....+....-
T Consensus 95 -~~eldaa-s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIl 172 (618)
T PRK14951 95 -YTELDAA-SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVL 172 (618)
T ss_pred -eeecCcc-cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHH
Confidence 0000000 0001111222221 1223 33334331 11111123445554 444444443322
Q ss_pred --CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 292 --SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 292 --~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
...+++++++.++....+.+.+...+...+ .+....|++.++|.+--+..
T Consensus 173 SRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 173 SRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 578999999999999999888765543222 46678899999997754443
No 112
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.33 E-value=0.00027 Score=73.84 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=37.9
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 166 RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
++++.+..= +.-+...|+|.+|+||||||+.+|+.. .. .+|+.++||.+
T Consensus 158 rvID~l~PI-GkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvL 206 (416)
T PRK09376 158 RIIDLIAPI-GKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLL 206 (416)
T ss_pred eeeeeeccc-ccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEE
Confidence 344444331 134678999999999999999999988 43 38999999998
No 113
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=3.1e-05 Score=75.93 Aligned_cols=175 Identities=18% Similarity=0.119 Sum_probs=111.0
Q ss_pred CccEEEccccccccc------ccCccc--ccccccccccc-cchhhcccccCceeeecCC-ccccc--chhhccCccCcE
Q 004021 496 GAKRISLMANEIESL------SEIPTL--LSLRRNDSLTE-LPSRISSLVSLHHLDLSLT-HIRGL--PQELKALEKLRY 563 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l------~~~~~l--L~L~~~~~l~~-lp~~i~~L~~L~~L~L~~~-~i~~l--p~~~~~L~~L~~ 563 (779)
.++++++++..|+.- .....| |+|.|+ .+.. +-..|.+=.+|+.|+|+.| ++++. ---+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 577888887766431 111112 777777 5543 4556778899999999998 67653 234789999999
Q ss_pred eeccCCcCCCCCchhhhcC-CccCcEeeeccccCCCcccccCCccCCCchhhHHhh-cCCCCCCceeEEeecccccccCC
Q 004021 564 LNLEYTHYLSIIPHQLISG-FLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMREL-LGLKRLNVLSWSFRSSLAVQKFF 641 (779)
Q Consensus 564 L~l~~~~~l~~lp~~~i~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~~~~~~~ 641 (779)
|+|++|......-.-.+.. =.+|..|+++|+.-.- ....+..| ..+++|.+|+++.+..
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl------------~~sh~~tL~~rcp~l~~LDLSD~v~------- 325 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL------------QKSHLSTLVRRCPNLVHLDLSDSVM------- 325 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh------------hhhHHHHHHHhCCceeeeccccccc-------
Confidence 9999994332221111111 2468888999875431 01223333 4678999999985432
Q ss_pred CCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCC
Q 004021 642 KYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGP 706 (779)
Q Consensus 642 ~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 706 (779)
|+.=....+.+++.|++|.++.|..+. +. .+ -.+...|+|.+|++.+|-
T Consensus 326 -l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~-------~~-----~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 -LKNDCFQEFFKFNYLQHLSLSRCYDII---PE-------TL-----LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -cCchHHHHHHhcchheeeehhhhcCCC---hH-------He-----eeeccCcceEEEEecccc
Confidence 111112345678999999999986532 21 00 256788999999999873
No 114
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.31 E-value=0.015 Score=68.89 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=39.7
Q ss_pred cccccchhhhHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ----QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...++|.++.++.|.+++... ....+++.++|++|+|||++|+.+++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999876532 2234589999999999999999999886
No 115
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.31 E-value=0.0049 Score=66.38 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=95.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccc-c------------------CCCCEEEEE
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ-Q------------------HNFDVVIWA 215 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~-~------------------~~F~~~~wv 215 (779)
..++|.+..++.+.+++..+. -...+-++|.+|+||||+|+.++...... . .+++. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 457999999999999987662 23577899999999999999998775110 0 12222 122
Q ss_pred Eec-----hHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcceeehhhc-----------cccccccCCCcEEEE
Q 004021 216 AVQ-----TFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLTEL-----------GVPLQMLNAGFKIVL 279 (779)
Q Consensus 216 ~v~-----~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l-----------~~~~~~~~~gs~Iiv 279 (779)
... +-.+++...+... ....++| .+.+|++ ...+......+.+|+
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~------------------p~~~~~~-vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 92 DAASNNGVDDIREILDNVKYA------------------PSSGKYK-VYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eccccCCHHHHHHHHHHHhcC------------------cccCCce-EEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 110 0111222211110 0011122 1222221 111212224556666
Q ss_pred EeCchh-hhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 280 KTRSAG-VCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 280 TTR~~~-va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
+|.+.. +..... ...+++.++++++....+...+...+...+ ++.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 665433 333322 467889999999999998887765442222 477888999999988766543
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0027 Score=69.08 Aligned_cols=180 Identities=12% Similarity=0.097 Sum_probs=95.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEE-----e--chHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNR-GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAA-----V--QTFQDDIGK 226 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~-----v--~~i~~~i~~ 226 (779)
.+++|.+..++.|.+++..+ .+ ..+-++|+.|+||||+|..+++.. .-...++...|.. . -.....+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 46899999999998888876 44 458899999999999999998876 2111111000000 0 011111111
Q ss_pred HhCCCcchhh---hhcchhhHHHHHHHhhC------CCcceeehhhc-----------cccccccCCCcEEEEE-eCchh
Q 004021 227 RIGFSEDKKW---KEKSLQDKAVDISSILS------PKKFRIDLTEL-----------GVPLQMLNAGFKIVLK-TRSAG 285 (779)
Q Consensus 227 ~l~~~~~~~~---~~~~~~~~~~~l~~~L~------~kr~~~~ld~l-----------~~~~~~~~~gs~IivT-TR~~~ 285 (779)
.-..+ -... .....++. ..+.+.+. ++|. +..|++ ...+....+.+.+|++ ++...
T Consensus 93 ~~~~n-~~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kv-vIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 93 GTSLN-ISEFDAASNNSVDDI-RLLRENVRYGPQKGRYRV-YIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred CCCCC-eEeecccccCCHHHH-HHHHHHHhhchhcCCeEE-EEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 10000 0000 00011111 12223332 2222 222222 1122222345555554 45455
Q ss_pred hhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 286 VCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 286 va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
+..... ...+++.++++++....+...+...+..- -.+.+..|++.++|.+--+.
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 544333 46789999999999888888775433222 25778999999999775443
No 117
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=5e-05 Score=65.91 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=63.3
Q ss_pred CccEEEcccccccccccCcc-------cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccC
Q 004021 496 GAKRISLMANEIESLSEIPT-------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEY 568 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~-------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~ 568 (779)
.+..+++++|.++.+|.... .|+|++| .+..+|..+..++.|+.|+++.|.+...|..|..|.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 55667888888877665321 4888888 888888888888888888888888888888888888888888888
Q ss_pred CcCCCCCchh
Q 004021 569 THYLSIIPHQ 578 (779)
Q Consensus 569 ~~~l~~lp~~ 578 (779)
| ....+|-.
T Consensus 133 n-a~~eid~d 141 (177)
T KOG4579|consen 133 N-ARAEIDVD 141 (177)
T ss_pred C-ccccCcHH
Confidence 7 55666665
No 118
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0039 Score=68.49 Aligned_cols=180 Identities=14% Similarity=0.096 Sum_probs=93.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNR-GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSE 232 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~ 232 (779)
.++||.+..++.+.+.+..+ .+ ..+-++|..|+||||+|+.+++.. .-....+.- -|- -.....|......+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~L-nC~~~~~~~--pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCL-NCSNGPTSD--PCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHH-cCcCCCCCC--CccccHHHHHHhccCCCCE
Confidence 56899999999888888766 44 478899999999999999998743 100000000 000 011111111110000
Q ss_pred -----chhhhhcchhhHHHHHHHhhCCCcc-eeehhhc-----------cccccccCCCcEEEE-EeCchhhhhhcC--C
Q 004021 233 -----DKKWKEKSLQDKAVDISSILSPKKF-RIDLTEL-----------GVPLQMLNAGFKIVL-KTRSAGVCDQMD--S 292 (779)
Q Consensus 233 -----~~~~~~~~~~~~~~~l~~~L~~kr~-~~~ld~l-----------~~~~~~~~~gs~Iiv-TTR~~~va~~~~--~ 292 (779)
.......+..+..+.....=-..+| ...+|++ ...+....+.+++|+ ||....+...+. .
T Consensus 88 ~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc 167 (491)
T PRK14964 88 IEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC 167 (491)
T ss_pred EEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh
Confidence 0000000111111111100001111 2222222 111111224455555 444455554433 6
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
..+.+.+++.++....+.+.+...+..-+ ++....|++.++|.+-.+
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred eeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 78899999999999999988876542222 566788999999877544
No 119
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.006 Score=65.61 Aligned_cols=164 Identities=12% Similarity=0.086 Sum_probs=91.2
Q ss_pred ccccchhhhHHHHHHHHhccCC--------CceEEEEEcCCCCcHHHHHHHHHhhhccc------------------cCC
Q 004021 155 QTIVGQEKLLPRVWRCITDQQK--------NRGIIGLYGIGGVGKTTLLKQVNNNFCHQ------------------QHN 208 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGvGKTtLA~~v~~~~~~~------------------~~~ 208 (779)
..++|.+..++.|.+.+..+.. -..-+-++|+.|+|||++|+.+++...-. ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4579999999999999987521 24568899999999999999998754110 011
Q ss_pred CCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhC-----CCcceeehhhc-----------cccccccC
Q 004021 209 FDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILS-----PKKFRIDLTEL-----------GVPLQMLN 272 (779)
Q Consensus 209 F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~~~~ld~l-----------~~~~~~~~ 272 (779)
.|. .++... . .....++ +..+.+... +++-...+|++ ...+....
T Consensus 85 pD~-~~i~~~--------------~---~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PDV-RVVAPE--------------G---LSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CCE-EEeccc--------------c---ccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 111 111110 0 0001111 111222211 11111222221 11111122
Q ss_pred CCcEEEEEeCc-hhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 273 AGFKIVLKTRS-AGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 273 ~gs~IivTTR~-~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
.+..+|++|.+ ..+....- ...+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 35555655555 45544433 678899999999998888744311 1 456788999999999755443
No 120
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0051 Score=68.58 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=93.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhC----
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIG---- 229 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~---- 229 (779)
.++||-+..++.|.+++..+. -...+-++|+.|+||||+|+.+++.. .-...++.. -|- -.....|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~--pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCL-NCEKGVSAN--PCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCCcc--cCCCCHHHHHHhcCCCceEE
Confidence 458999999999999998762 23467899999999999999998866 111111100 000 011111110000
Q ss_pred -CCcchhhhhcchhhHHHHHHHhhCCCcc-eeehhhcc-----------ccccccCCCcEEEEE-eCchhhhhhcC--Cc
Q 004021 230 -FSEDKKWKEKSLQDKAVDISSILSPKKF-RIDLTELG-----------VPLQMLNAGFKIVLK-TRSAGVCDQMD--SK 293 (779)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~l~~~L~~kr~-~~~ld~l~-----------~~~~~~~~gs~IivT-TR~~~va~~~~--~~ 293 (779)
..........+..+....+...-...+| ...+|++. ..+......+++|++ |....+..... ..
T Consensus 92 eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~ 171 (509)
T PRK14958 92 EVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCL 171 (509)
T ss_pred EEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhh
Confidence 0000000001111111111111111233 22233321 111111234555554 44444443332 56
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
.+++++++.++....+.+.+...+...+ .+....|++.++|.+.-+.
T Consensus 172 ~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 172 QFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDAL 218 (509)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHH
Confidence 7889999999988887777665442221 4567789999999775444
No 121
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0072 Score=64.03 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=100.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCCEEEEE-Ee--chHHHHHHHH---
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-HNFDVVIWA-AV--QTFQDDIGKR--- 227 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~~F~~~~wv-~v--~~i~~~i~~~--- 227 (779)
..++|.++..+.+...+..+. -...+-|+|..|+||||+|..+++...... ..+...... .. ....+.|...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hP 101 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHP 101 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCC
Confidence 568999999999999998772 334688999999999999999988762100 001111000 00 1233333221
Q ss_pred ----hCCCcchhh----hhcchhhHHHHHHHhhCC-----Ccceeehhhcc-----------ccccccCCCcE-EEEEeC
Q 004021 228 ----IGFSEDKKW----KEKSLQDKAVDISSILSP-----KKFRIDLTELG-----------VPLQMLNAGFK-IVLKTR 282 (779)
Q Consensus 228 ----l~~~~~~~~----~~~~~~~~~~~l~~~L~~-----kr~~~~ld~l~-----------~~~~~~~~gs~-IivTTR 282 (779)
+..+.++.. .....++ +..+.+++.. ++-.+.+|++. ..+.....+.. |++|++
T Consensus 102 dl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 102 NLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECC
Confidence 111000000 0111222 2344444432 22233333321 11111122344 455544
Q ss_pred chhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 283 SAGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 283 ~~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
-..+..... ...+.+.+++.++..+++.+.... . . --.+....|++.++|.|.....+
T Consensus 181 ~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 181 SGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred hhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444443333 578999999999999999874321 1 1 11455788999999999866544
No 122
>PF14516 AAA_35: AAA-like domain
Probab=97.22 E-value=0.093 Score=55.51 Aligned_cols=185 Identities=16% Similarity=0.203 Sum_probs=110.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe---------------ch
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV---------------QT 219 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v---------------~~ 219 (779)
+..|+|...-+++.+.|.+. ...+.|.|+-.+|||+|...+.+.. . +..+ .++++++ ..
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHH-H-HCCC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 45689987788888888763 2689999999999999999998877 3 2344 3446666 23
Q ss_pred HHHHHHHHhCCCc--chhhhh--cchhhHHHHHHHhh-C--CCcceeehhhccccccc-------------------cC-
Q 004021 220 FQDDIGKRIGFSE--DKKWKE--KSLQDKAVDISSIL-S--PKKFRIDLTELGVPLQM-------------------LN- 272 (779)
Q Consensus 220 i~~~i~~~l~~~~--~~~~~~--~~~~~~~~~l~~~L-~--~kr~~~~ld~l~~~~~~-------------------~~- 272 (779)
+...|.++++... ...|.. .+......-+.+++ + +++..+.+|++...+.. ..
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 4555666666542 111211 11122222333332 2 45665555554322210 00
Q ss_pred -CCcEEEEEeCchhh---hhh----cC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 273 -AGFKIVLKTRSAGV---CDQ----MD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 273 -~gs~IivTTR~~~v---a~~----~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
..+-.+|...+... ... .. ...+.|++++.+|...|..++-..-. ....++|...+||+|.-+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHH
Confidence 11122333222111 111 11 45789999999999999887632211 3348999999999999999
Q ss_pred HHHHHhcCC
Q 004021 344 TVGRAMKSQ 352 (779)
Q Consensus 344 ~~g~~l~~~ 352 (779)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999988763
No 123
>PRK06620 hypothetical protein; Validated
Probab=97.22 E-value=0.017 Score=56.84 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=44.8
Q ss_pred CCCcEEEEEeCchh-------hhhhcC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 272 NAGFKIVLKTRSAG-------VCDQMD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 272 ~~gs~IivTTR~~~-------va~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
..|..||+|++... ..+.+. ..++++++++.++-..++.+.+.......+ +++..-|++.+.|---.+
T Consensus 111 e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 111 EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHH
Confidence 35678999987532 223333 458999999999988888887764332222 567777777777654443
No 124
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.21 E-value=0.009 Score=70.15 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=40.9
Q ss_pred cccccchhhhHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ----QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.+.+|.++.+++|+++|... .....++.++|.+|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999988742 2245689999999999999999999876
No 125
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0055 Score=69.27 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=95.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHH-----h
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKR-----I 228 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~-----l 228 (779)
.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.. .-...... .-|- ......|... +
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~~--~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSL-NCENAQHG--EPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCCC--CCCcccHHHHHHhccCccceE
Confidence 568999999999999998762 23578999999999999999998765 11111000 0000 0011111100 0
Q ss_pred CCCcchhhhhcchhhHHHHHHHh-hCCCcceeehhhccc-----------cccccCCCcEEEEEeCc-hhhhhhc-C-Cc
Q 004021 229 GFSEDKKWKEKSLQDKAVDISSI-LSPKKFRIDLTELGV-----------PLQMLNAGFKIVLKTRS-AGVCDQM-D-SK 293 (779)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~~~~ld~l~~-----------~~~~~~~gs~IivTTR~-~~va~~~-~-~~ 293 (779)
...........+..+........ ..+++-.+.+|++.. .+......+++|++|.+ ..+.... + ..
T Consensus 92 EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~ 171 (709)
T PRK08691 92 EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCL 171 (709)
T ss_pred EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHh
Confidence 00000000000111111111100 112222333444311 11111234566666644 3333222 2 46
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
.|.+.+++.++....+.+.+...+...+ .+....|++.++|.+.-+.
T Consensus 172 ~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 172 QFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHH
Confidence 7788899999999999988766543222 5678899999999875444
No 126
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0045 Score=68.39 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=41.5
Q ss_pred ccccchhhhHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+-+|.++-+++|++++.-+ ....++++.+|++|||||.+|+.++...
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 34499999999999998643 3456899999999999999999999987
No 127
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.19 E-value=0.0085 Score=65.70 Aligned_cols=141 Identities=13% Similarity=0.209 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcc
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKF 257 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 257 (779)
..-+.|+|..|+|||+|++++++.. . ...-.+++++...+...+...+... ....++..++...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l-~--~~~~~v~yi~~~~f~~~~~~~l~~~------------~~~~f~~~~~~~d- 204 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL-R--ESGGKILYVRSELFTEHLVSAIRSG------------EMQRFRQFYRNVD- 204 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH-H--HcCCCEEEeeHHHHHHHHHHHHhcc------------hHHHHHHHcccCC-
Confidence 3568899999999999999999987 2 2223456676666655555554321 0112333333222
Q ss_pred eeehhhcccc-------------cc-ccCCCcEEEEEeCch---------hhhhhcC-CceeEccCCChHHHHHHHHHHh
Q 004021 258 RIDLTELGVP-------------LQ-MLNAGFKIVLKTRSA---------GVCDQMD-SKNLEVYSLAHDEAWKLFQEMI 313 (779)
Q Consensus 258 ~~~ld~l~~~-------------~~-~~~~gs~IivTTR~~---------~va~~~~-~~~~~l~~L~~~~a~~Lf~~~a 313 (779)
.+.+|++... +. -...|..||+||... .+...+. ...+.+.+++.++-..++.+.+
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 3444444211 00 012466788888642 1222233 4678999999999999999887
Q ss_pred hccCCCCCCChHHHHHHHHHHhCC
Q 004021 314 ERSTLDSHTSIPELAETLARECGR 337 (779)
Q Consensus 314 ~~~~~~~~~~l~~~~~~I~~~c~g 337 (779)
......-+ +++..-|+..+.|
T Consensus 285 ~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 285 EALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHcCCCCC---HHHHHHHHHhcCC
Confidence 65442222 4555656666654
No 128
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0001 Score=72.42 Aligned_cols=78 Identities=24% Similarity=0.269 Sum_probs=42.4
Q ss_pred cccccccccccc---chhhcccccCceeeecCCcccccchhh-ccCccCcEeeccCCcCCC--CCchhhhcCCccCcEee
Q 004021 517 LSLRRNDSLTEL---PSRISSLVSLHHLDLSLTHIRGLPQEL-KALEKLRYLNLEYTHYLS--IIPHQLISGFLKLEVLR 590 (779)
Q Consensus 517 L~L~~~~~l~~l---p~~i~~L~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~ 590 (779)
|||.+| .|..- -.-..+|++|++|+|+.|.+..--.++ -.+.+|++|-|.++. +. .... ++..++.++.|+
T Consensus 76 lDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s-~l~~lP~vtelH 152 (418)
T KOG2982|consen 76 LDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTS-SLDDLPKVTELH 152 (418)
T ss_pred hhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhh-hhhcchhhhhhh
Confidence 777777 55543 223456777777777777544321111 345667777776662 21 1111 245566666666
Q ss_pred eccccCC
Q 004021 591 LLECGSE 597 (779)
Q Consensus 591 l~~~~~~ 597 (779)
++.|++.
T Consensus 153 mS~N~~r 159 (418)
T KOG2982|consen 153 MSDNSLR 159 (418)
T ss_pred hccchhh
Confidence 6666443
No 129
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.19 E-value=0.00077 Score=61.96 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=42.9
Q ss_pred cchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 158 VGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
+|++..++.+...+... ..+.+.|+|.+|+|||++|+.+++.. . ..-..++++..
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~ 55 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNA 55 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEeh
Confidence 47888899999888765 45789999999999999999999987 2 22234556655
No 130
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0043 Score=69.33 Aligned_cols=185 Identities=13% Similarity=0.100 Sum_probs=96.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCc-
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSE- 232 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~- 232 (779)
..++|++..++.+.+++..+. -.+.+-++|+.|+||||+|+.+++.. .-....+.. .|- ...++.+........
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L-~C~~~~~~~--~Cg~C~sCr~i~~~~h~Dii 91 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAI-NCLNPKDGD--CCNSCSVCESINTNQSVDIV 91 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCC--CCcccHHHHHHHcCCCCceE
Confidence 568999999999999987662 23578899999999999999998876 111111000 000 112222211110000
Q ss_pred --c--hhhhhcchhhHHHHHHH--hhCCCcceeehhhcc-----------ccccccCCCcEEE-EEeCchhhhhhcC--C
Q 004021 233 --D--KKWKEKSLQDKAVDISS--ILSPKKFRIDLTELG-----------VPLQMLNAGFKIV-LKTRSAGVCDQMD--S 292 (779)
Q Consensus 233 --~--~~~~~~~~~~~~~~l~~--~L~~kr~~~~ld~l~-----------~~~~~~~~gs~Ii-vTTR~~~va~~~~--~ 292 (779)
+ ......+.......+.. ...++| ...+|++. ..+......+.+| +|+....+..... .
T Consensus 92 eIdaas~igVd~IReIi~~~~~~P~~~~~K-VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRc 170 (605)
T PRK05896 92 ELDAASNNGVDEIRNIIDNINYLPTTFKYK-VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRC 170 (605)
T ss_pred EeccccccCHHHHHHHHHHHHhchhhCCcE-EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhh
Confidence 0 00000011111111111 111222 23333321 1111112334444 4544455543322 5
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChh-HHHHHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPL-ALKTVGR 347 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL-ai~~~g~ 347 (779)
..+++.+++.++....+...+...+...+ .+.+..+++.++|.+- |+..+-.
T Consensus 171 q~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 171 QRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 68899999999999998887765432222 4667889999999654 4444443
No 131
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.16 E-value=0.0013 Score=70.47 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=49.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.++++.++..+.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.||++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtF 232 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQF 232 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEee
Confidence 45788899999999998865 578889999999999999999887 44557888889988
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.14 E-value=0.003 Score=68.33 Aligned_cols=48 Identities=29% Similarity=0.318 Sum_probs=39.0
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|+++.++++.+.+... -...+-|.++|.+|+|||++|+++++..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 46789999999998876421 1245678999999999999999999876
No 133
>CHL00181 cbbX CbbX; Provisional
Probab=97.11 E-value=0.012 Score=60.66 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=32.7
Q ss_pred ccccchhhhHHHHHHHHh---c-------c---CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---D-------Q---QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.++|.++.+++|.++.. - + ......+.++|.+|+||||+|+.+++..
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 346887776665544421 1 0 1123357899999999999999998865
No 134
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.011 Score=62.88 Aligned_cols=181 Identities=10% Similarity=0.064 Sum_probs=98.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCC------EEEEEEe-chHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-HNFD------VVIWAAV-QTFQDDIGK 226 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~~F~------~~~wv~v-~~i~~~i~~ 226 (779)
..++|.++.++.+.+.+..+. -...+-++|+.|+||||+|..+++..--.. ...+ ...-++- ....+.|..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 568999999999999988772 234688999999999999998887652111 0000 0000010 112222211
Q ss_pred HhCCCc--------chhh----hhcchhhHHHHHHHhhCCC----cc-eeehhhcc-----------ccccccCCCcEEE
Q 004021 227 RIGFSE--------DKKW----KEKSLQDKAVDISSILSPK----KF-RIDLTELG-----------VPLQMLNAGFKIV 278 (779)
Q Consensus 227 ~l~~~~--------~~~~----~~~~~~~~~~~l~~~L~~k----r~-~~~ld~l~-----------~~~~~~~~gs~Ii 278 (779)
.- .++ ++.. ....+++ +..+.+.+.-+ ++ .+.+|++. ..+..-..++.+|
T Consensus 98 ~~-HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 98 GA-HGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred cC-CCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 10 000 0000 0011222 33344444322 12 33334321 1111122456667
Q ss_pred EEeCch-hhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 279 LKTRSA-GVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 279 vTTR~~-~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
++|.+. .+..... ...+.+.+++.++..+++.+...... .+....+++.++|.|+.+..+
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 777664 4433333 67889999999999999987642211 222378899999999866554
No 135
>PRK08118 topology modulation protein; Reviewed
Probab=97.10 E-value=0.00047 Score=64.93 Aligned_cols=36 Identities=36% Similarity=0.647 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEE
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIW 214 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~w 214 (779)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987222356776665
No 136
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.01 Score=69.74 Aligned_cols=182 Identities=8% Similarity=0.018 Sum_probs=94.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCC---
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGF--- 230 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~--- 230 (779)
.++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++...-. ...... -|- -.-+..|...-..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~~--pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCV-EGPTST--PCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCCC--CCcccHHHHHHHcCCCCCCc
Confidence 468999999999999998762 23467899999999999999998876211 111000 000 0111111111000
Q ss_pred ----CcchhhhhcchhhHHHHHHHhhCCCcc-eeehhhc-----------cccccccCCCcEEE-EEeCchhhhhhcC--
Q 004021 231 ----SEDKKWKEKSLQDKAVDISSILSPKKF-RIDLTEL-----------GVPLQMLNAGFKIV-LKTRSAGVCDQMD-- 291 (779)
Q Consensus 231 ----~~~~~~~~~~~~~~~~~l~~~L~~kr~-~~~ld~l-----------~~~~~~~~~gs~Ii-vTTR~~~va~~~~-- 291 (779)
.........+..++.+.+...-...+| .+.+|++ ...+..-...+.+| +||....+...+.
T Consensus 91 v~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR 170 (824)
T PRK07764 91 VTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR 170 (824)
T ss_pred EEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh
Confidence 000000001111111111110111222 2233332 11122222344444 4555555655443
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
...|++..++.++..+.+.+.+...+...+ .+....|++.++|.+..+.
T Consensus 171 c~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 171 THHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 678899999999999888887655442221 4566789999999774433
No 137
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.008 Score=66.82 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=40.9
Q ss_pred ccccchhhhHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+-+|.++-+++|+++|.-. .-.-+++++||++|||||+|++.++...
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 34489999999999999643 2345799999999999999999999987
No 138
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.023 Score=61.41 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=91.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccc-----cCCCCEEE-EEEe-c----hHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ-----QHNFDVVI-WAAV-Q----TFQDD 223 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~-----~~~F~~~~-wv~v-~----~i~~~ 223 (779)
.+++|.+..++.+.+.+..+. -.+.+-++|.+|+||||+|+.+.+..... ...|...+ -+.. . +-...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHH
Confidence 457999999999999998762 34588899999999999999998875210 11122111 1110 0 11111
Q ss_pred HHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcceeehhhcc-----------ccccccCCCcEEEEEe-CchhhhhhcC
Q 004021 224 IGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLTELG-----------VPLQMLNAGFKIVLKT-RSAGVCDQMD 291 (779)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~-----------~~~~~~~~gs~IivTT-R~~~va~~~~ 291 (779)
+.+.+... ....++++ +.+|++. ..+......+.+|++| ....+.....
T Consensus 96 l~~~~~~~------------------p~~~~~ki-viIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKI-YIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEE-EEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 22211100 00111222 2222210 0111112334455444 4444433322
Q ss_pred --CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 292 --SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 292 --~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
...++.+++++++....+...+...+...+ .+....|++.++|-+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 567899999999999998887765442222 567888899999865433
No 139
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.029 Score=63.16 Aligned_cols=186 Identities=14% Similarity=0.151 Sum_probs=98.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~ 233 (779)
.+++|.+..++.|.+.+..+. -...+-++|..|+||||+|+.+++.. .-....+.. -|- -.....|...-..+ -
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L-~C~~~~~~~--pCg~C~sC~~i~~g~hpD-v 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKAL-NCETAPTGE--PCNTCEQCRKVTQGMHVD-V 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhc-cccCCCCCC--CCcccHHHHHHhcCCCCc-e
Confidence 457999888888888887651 24678899999999999999998876 211111000 000 01111111110000 0
Q ss_pred hhhh---hcchhhHHHHHHHhh-----CCCcceeehhhcc-----------ccccccCCCcEEEEEe-CchhhhhhcC--
Q 004021 234 KKWK---EKSLQDKAVDISSIL-----SPKKFRIDLTELG-----------VPLQMLNAGFKIVLKT-RSAGVCDQMD-- 291 (779)
Q Consensus 234 ~~~~---~~~~~~~~~~l~~~L-----~~kr~~~~ld~l~-----------~~~~~~~~gs~IivTT-R~~~va~~~~-- 291 (779)
...+ ....++ +..+.+.+ .+++-.+.+|++. ..+........+|++| ....+...+.
T Consensus 91 ~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR 169 (624)
T PRK14959 91 VEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR 169 (624)
T ss_pred EEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh
Confidence 0000 001111 11122211 1222233333321 1111112344455544 4355543332
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCC-hhHHHHHHHHh
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRL-PLALKTVGRAM 349 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl-PLai~~~g~~l 349 (779)
...+++++++.++....+...+.......+ .+.+..|++.++|. -.|+..+...+
T Consensus 170 cq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 170 CQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567899999999999999887765442222 56788899999995 46777766544
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.009 Score=68.32 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=98.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCC---CCEEEEEEechHHHHHHHHhCCC
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHN---FDVVIWAAVQTFQDDIGKRIGFS 231 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~---F~~~~wv~v~~i~~~i~~~l~~~ 231 (779)
.+++|.+..++.|..++..+. -...+-++|..|+||||+|+.+++.. .-... ++.+ .....+..|.......
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~~~~~c---~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDPKGRPC---GTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCC---ccCHHHHHHhcCCCCe
Confidence 568999999999998887662 23567899999999999999998876 21111 1100 0012333333221110
Q ss_pred cch-hh-hhcchhhHHHHHHHhhCCCc-----ceeehhhc-----------cccccccCCCcEEEEEeC-chhhhhhcC-
Q 004021 232 EDK-KW-KEKSLQDKAVDISSILSPKK-----FRIDLTEL-----------GVPLQMLNAGFKIVLKTR-SAGVCDQMD- 291 (779)
Q Consensus 232 ~~~-~~-~~~~~~~~~~~l~~~L~~kr-----~~~~ld~l-----------~~~~~~~~~gs~IivTTR-~~~va~~~~- 291 (779)
.-+ .. .....++ ...+.+.+.... -.+.+|++ ...+......+.+|++|. ...+.....
T Consensus 91 ~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 91 VIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred EEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh
Confidence 000 00 0011111 112222222111 12333332 111112223455555554 344443322
Q ss_pred -CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 292 -SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 292 -~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
...+.+..++.++....+.+.+...+...+ .+....|++.++|.+..+...
T Consensus 170 R~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 170 RCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred ccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 467889999999999888888765442222 467889999999988655443
No 141
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.021 Score=64.78 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=98.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC--E-EEEEEe-chHHHHHHHHhCC
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD--V-VIWAAV-QTFQDDIGKRIGF 230 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~--~-~~wv~v-~~i~~~i~~~l~~ 230 (779)
.+++|.+..++.|.+.+..+. -...+-++|..|+||||+|+.+++.. .-..... + .+-.|- ..-...|...-..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L-~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARAL-NYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhh-CcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 568999999999999998762 23468899999999999999998876 1111100 0 000011 1122222221110
Q ss_pred Ccch--hhhhcchhhHHHHHHHhhC------CCcceeehhhc-----------cccccccCCCcEEEE-EeCchhhhhhc
Q 004021 231 SEDK--KWKEKSLQDKAVDISSILS------PKKFRIDLTEL-----------GVPLQMLNAGFKIVL-KTRSAGVCDQM 290 (779)
Q Consensus 231 ~~~~--~~~~~~~~~~~~~l~~~L~------~kr~~~~ld~l-----------~~~~~~~~~gs~Iiv-TTR~~~va~~~ 290 (779)
+.-+ .......++. ..+.+.++ ++| ..++|++ ...+..-..++.+|+ ||....+...+
T Consensus 102 Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~K-VvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI 179 (598)
T PRK09111 102 DVLEMDAASHTGVDDI-REIIESVRYRPVSARYK-VYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTV 179 (598)
T ss_pred ceEEecccccCCHHHH-HHHHHHHHhchhcCCcE-EEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHH
Confidence 0000 0000111111 11222221 222 2333332 111112224455554 54445554333
Q ss_pred C--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 291 D--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 291 ~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
. ...+++..++.++....+.+.+.......+ .+....|++.++|.+.-+..
T Consensus 180 ~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 180 LSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 3 578899999999999999888765442222 46788999999998865544
No 142
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.00 E-value=0.002 Score=67.91 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.-..++|+|.+|+|||||++.+++.. . ..+|+..+||.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlL 205 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLL 205 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEE
Confidence 44689999999999999999999987 3 348999999999
No 143
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.017 Score=65.09 Aligned_cols=186 Identities=11% Similarity=0.036 Sum_probs=97.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCC---
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGF--- 230 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~--- 230 (779)
.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+++...- ....+.. -|- -.....|...-+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~~~--pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNC-AQGPTAT--PCGVCESCVALAPNGPGSID 88 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCCCC--cccccHHHHHhhcccCCCce
Confidence 568999999999999998762 2345789999999999999999887511 1111000 000 0111111110000
Q ss_pred ----CcchhhhhcchhhHHHHHHHh--hCCCcceeehhhcc-----------ccccccCCCcE-EEEEeCchhhhhhcC-
Q 004021 231 ----SEDKKWKEKSLQDKAVDISSI--LSPKKFRIDLTELG-----------VPLQMLNAGFK-IVLKTRSAGVCDQMD- 291 (779)
Q Consensus 231 ----~~~~~~~~~~~~~~~~~l~~~--L~~kr~~~~ld~l~-----------~~~~~~~~gs~-IivTTR~~~va~~~~- 291 (779)
.........+..++...+... ...+| ...+|++. ..+........ |++||....+...+.
T Consensus 89 vieidaas~~gvd~iRel~~~~~~~P~~~~~K-VvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 89 VVELDAASHGGVDDTRELRDRAFYAPAQSRYR-IFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred EEEeccccccCHHHHHHHHHHHHhhhhcCCce-EEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH
Confidence 000000001111111111111 11122 33333321 11111123444 445655566554433
Q ss_pred -CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChh-HHHHHHHH
Q 004021 292 -SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPL-ALKTVGRA 348 (779)
Q Consensus 292 -~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL-ai~~~g~~ 348 (779)
...|++.+++.++..+.+.+.+...+...+ .+....|++.++|-+- |+..+-.+
T Consensus 168 Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 168 RTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred hceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678999999999999888887765442222 4567888999999764 44444443
No 144
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.02 Score=64.37 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=92.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCC--CEEEEEEechHHHHHHHHh----
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNF--DVVIWAAVQTFQDDIGKRI---- 228 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F--~~~~wv~v~~i~~~i~~~l---- 228 (779)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+++.. .-.... ..+-. -.....+...-
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pcg~---C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSL-NCETGVTATPCGV---CSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCC---CHHHHHHhcCCCCce
Confidence 568999999999999988762 23467899999999999999998776 111000 00000 00011110000
Q ss_pred -CCCcchhhhhcchhhHHHHHHHhh-----CCCcceeehhhccc-----------cccccCCCcEEEEEe-Cchhhhhhc
Q 004021 229 -GFSEDKKWKEKSLQDKAVDISSIL-----SPKKFRIDLTELGV-----------PLQMLNAGFKIVLKT-RSAGVCDQM 290 (779)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~~~~ld~l~~-----------~~~~~~~gs~IivTT-R~~~va~~~ 290 (779)
..... .....++. ..+.+.. .+++-...+|++.. .+......+.+|++| ....+...+
T Consensus 91 ~ei~~~---~~~~vd~i-r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 91 IEVDAA---SNTQVDAM-RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred eEeecc---ccCCHHHH-HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH
Confidence 00000 00111111 1111111 11111333333211 111112344555544 444443222
Q ss_pred C--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChh-HHHHH
Q 004021 291 D--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPL-ALKTV 345 (779)
Q Consensus 291 ~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL-ai~~~ 345 (779)
. ...+++++++.++..+.+.+.+...+... -++....|++.++|.+- |+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 56889999999999988888775443221 24567889999999775 44443
No 145
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.95 E-value=0.00063 Score=63.41 Aligned_cols=77 Identities=29% Similarity=0.358 Sum_probs=59.5
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccchhhcc-CccCcEeeccCCcCCCC---CchhhhcCCccCcEeee
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKA-LEKLRYLNLEYTHYLSI---IPHQLISGFLKLEVLRL 591 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~-L~~L~~L~l~~~~~l~~---lp~~~i~~L~~L~~L~l 591 (779)
.+||++| .+..++ .+..+..|.+|.|++|+|+.+-+.+.. +++|+.|.|.+| .+.. +-+ +..+++|++|.+
T Consensus 46 ~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--La~~p~L~~Ltl 120 (233)
T KOG1644|consen 46 AIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDP--LASCPKLEYLTL 120 (233)
T ss_pred eeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcch--hccCCccceeee
Confidence 5889999 777665 566889999999999999998766654 567999999998 4443 433 567788888888
Q ss_pred ccccCC
Q 004021 592 LECGSE 597 (779)
Q Consensus 592 ~~~~~~ 597 (779)
-+|...
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 887655
No 146
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.015 Score=65.99 Aligned_cols=182 Identities=13% Similarity=0.119 Sum_probs=95.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEE------e-chHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNR-GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAA------V-QTFQDDIGK 226 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~------v-~~i~~~i~~ 226 (779)
.+++|.+..+..|.+.+..+ .+ ..+.++|+.|+||||+|+.+++.. .-...++...|-. - -.....+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 56899999999999988765 44 458899999999999999998776 2111111000110 0 111111111
Q ss_pred HhCCCcchhh---hhcchhhHHHHHHHhh------CCCcceeehhhcc-----------ccccccCCCcEEE-EEeCchh
Q 004021 227 RIGFSEDKKW---KEKSLQDKAVDISSIL------SPKKFRIDLTELG-----------VPLQMLNAGFKIV-LKTRSAG 285 (779)
Q Consensus 227 ~l~~~~~~~~---~~~~~~~~~~~l~~~L------~~kr~~~~ld~l~-----------~~~~~~~~gs~Ii-vTTR~~~ 285 (779)
.-..+ -... .....++.. .+.+.+ .++|. ..+|++. ..+..-...+.+| +|++...
T Consensus 93 g~~~n-~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KV-vIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 93 GTSLN-ISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRV-YIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred cCCCC-eEEecccccCCHHHHH-HHHHHHHhhhhcCCCEE-EEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00000 0000 001111211 122222 23333 2222221 1111112334444 4555555
Q ss_pred hhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCCh-hHHHHH
Q 004021 286 VCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLP-LALKTV 345 (779)
Q Consensus 286 va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP-Lai~~~ 345 (779)
+...+. ...+++.+++.++....+.+.+...+..-+ .+.+..|++.++|.. .|+..+
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 554433 678999999999988888877654332222 567889999999954 444433
No 147
>PRK08116 hypothetical protein; Validated
Probab=96.91 E-value=0.0059 Score=62.29 Aligned_cols=92 Identities=21% Similarity=0.206 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcce
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKFR 258 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~ 258 (779)
.-+.++|.+|+|||.||.++++.. . ..-..++++++.+++..+....... ...+ ...+.+.+.+-. +
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~--~~~~~v~~~~~~~ll~~i~~~~~~~-----~~~~----~~~~~~~l~~~d-l 181 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-I--EKGVPVIFVNFPQLLNRIKSTYKSS-----GKED----ENEIIRSLVNAD-L 181 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHHHHHHHHHHHHhcc-----cccc----HHHHHHHhcCCC-E
Confidence 458899999999999999999987 2 2234577888777777776554322 1111 112333344333 5
Q ss_pred eehhhcccccc------------c--cCCCcEEEEEeCc
Q 004021 259 IDLTELGVPLQ------------M--LNAGFKIVLKTRS 283 (779)
Q Consensus 259 ~~ld~l~~~~~------------~--~~~gs~IivTTR~ 283 (779)
+++|+++..-. + -..|..+||||..
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 67777743210 0 1246678888863
No 148
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.88 E-value=0.024 Score=58.50 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=31.8
Q ss_pred cccchhhhHHHHHHHHh---cc----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCIT---DQ----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|.++.+++|.+... .. .....-+.++|.+|+|||++|+.+++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 46887776666555321 10 0112257899999999999998888766
No 149
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.86 E-value=0.0013 Score=68.49 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=41.4
Q ss_pred cccchhhhHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITDQ----QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|.++.++++++++... +...+++.++|++|+||||||..+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999763 2346899999999999999999999887
No 150
>PRK07261 topology modulation protein; Provisional
Probab=96.85 E-value=0.0022 Score=60.73 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998765
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.85 E-value=0.044 Score=60.38 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=39.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+++..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999997662 23567899999999999999998765
No 152
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.85 E-value=0.044 Score=52.87 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=41.6
Q ss_pred CCcEEEEEeCc-hhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhH
Q 004021 273 AGFKIVLKTRS-AGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLA 341 (779)
Q Consensus 273 ~gs~IivTTR~-~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLa 341 (779)
..+.+|++|++ ..+..... ...+++.+++.++..+.+.+. + .. ++.+..|++.++|.|..
T Consensus 125 ~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 125 PNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---IS-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---CC-----HHHHHHHHHHcCCCccc
Confidence 34556666654 34433332 568899999999998888776 1 11 46788999999998853
No 153
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.83 E-value=0.1 Score=55.42 Aligned_cols=188 Identities=13% Similarity=0.184 Sum_probs=111.4
Q ss_pred hhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHH-HHHHhhhccccCCCCEEEEEEe---------chHHHHHHHHhC
Q 004021 160 QEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLL-KQVNNNFCHQQHNFDVVIWAAV---------QTFQDDIGKRIG 229 (779)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA-~~v~~~~~~~~~~F~~~~wv~v---------~~i~~~i~~~l~ 229 (779)
|.+..++|..||.+. .-..|.|.|+-|+||+.|+ .++.++. + .+..+.. ..+...++.++|
T Consensus 1 R~e~~~~L~~wL~e~--~~TFIvV~GPrGSGK~elV~d~~L~~r-~------~vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN--PNTFIVVQGPRGSGKRELVMDHVLKDR-K------NVLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhcC--CCeEEEEECCCCCCccHHHHHHHHhCC-C------CEEEEEChHhhhccChHHHHHHHHHhcC
Confidence 567889999999987 5579999999999999999 6665554 1 1555555 344555555554
Q ss_pred CCcchhh---------------------hhcchhhHHH--------HHHH-------------hhCCCcc---------e
Q 004021 230 FSEDKKW---------------------KEKSLQDKAV--------DISS-------------ILSPKKF---------R 258 (779)
Q Consensus 230 ~~~~~~~---------------------~~~~~~~~~~--------~l~~-------------~L~~kr~---------~ 258 (779)
.-+-=.| -..+.+.... .|++ .+++..| .
T Consensus 72 Y~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 72 YFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 3211000 0011111111 1111 0111111 4
Q ss_pred eehhhccccc----------------cccCCCcEEEEEeCchhhh----hhcC---CceeEccCCChHHHHHHHHHHhhc
Q 004021 259 IDLTELGVPL----------------QMLNAGFKIVLKTRSAGVC----DQMD---SKNLEVYSLAHDEAWKLFQEMIER 315 (779)
Q Consensus 259 ~~ld~l~~~~----------------~~~~~gs~IivTTR~~~va----~~~~---~~~~~l~~L~~~~a~~Lf~~~a~~ 315 (779)
+++|++..-- ....+--+||++|-+.... ..+. .+.+.|...+++.|.++...+...
T Consensus 152 VVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 152 VVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 4555542110 0113455888888775543 3343 467789999999999999988765
Q ss_pred cCCC------------CC-----CChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChh
Q 004021 316 STLD------------SH-----TSIPELAETLARECGRLPLALKTVGRAMKSQKKVG 356 (779)
Q Consensus 316 ~~~~------------~~-----~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~ 356 (779)
.... .+ .....-....+...||=-.-+..+++.++...++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 3210 00 12334456778888998889999999888765543
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.017 Score=65.95 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=93.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcc--------------------ccCCCCEEEE
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCH--------------------QQHNFDVVIW 214 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~--------------------~~~~F~~~~w 214 (779)
..++|.+..++.|.+.+..+. -...+-++|..|+||||+|+.++....- ...+|+.. .
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-E 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-E
Confidence 458999999999999998762 2346889999999999999998876510 01133321 1
Q ss_pred EEec-----hHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcceeehhhc-----------cccccccCCCcEEE
Q 004021 215 AAVQ-----TFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLTEL-----------GVPLQMLNAGFKIV 278 (779)
Q Consensus 215 v~v~-----~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l-----------~~~~~~~~~gs~Ii 278 (779)
+... +-.++++.++... -...++|. ..+|++ ...+..-..++.+|
T Consensus 95 ld~~~~~~vd~Ir~li~~~~~~------------------P~~~~~KV-vIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 95 LDAASNNSVDDIRNLIEQVRIP------------------PQIGKYKI-YIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred ecccccCCHHHHHHHHHHHhhC------------------cccCCcEE-EEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 1110 0011111111000 01112222 222221 11111112344544
Q ss_pred -EEeCchhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 279 -LKTRSAGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 279 -vTTR~~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
+||+...+..... ...+++.+++.++....+.+.+...+...+ .+.+..|++.++|-.--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 4555566654433 678999999999999999887765542222 456788999999966433
No 155
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.82 E-value=0.029 Score=57.31 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=33.9
Q ss_pred cccchhhhHHHHHHHHhc----------c---CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITD----------Q---QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~----------~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|.+..+++|.+.... + .+...-+.++|.+|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 478988777666543211 1 2234567899999999999999998765
No 156
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.80 E-value=0.001 Score=59.02 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|.|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.79 E-value=0.0082 Score=71.35 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=39.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+.++.++++.|... ...-+.++|.+|+||||+|..++++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999988776 33445699999999999999999876
No 158
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.095 Score=55.88 Aligned_cols=150 Identities=16% Similarity=0.253 Sum_probs=85.8
Q ss_pred ccccchhhhH-HHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC--EEEEEEechHHHHHHHHhCC
Q 004021 155 QTIVGQEKLL-PRVWRCITDQ-QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD--VVIWAAVQTFQDDIGKRIGF 230 (779)
Q Consensus 155 ~~~vGr~~~~-~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~--~~~wv~v~~i~~~i~~~l~~ 230 (779)
..++|-.... ..+...+.+. ......+-|||..|.|||.|++++.+.. ..... .+++++......+++..+..
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccHHHHHHHHHHHHHh
Confidence 3445544322 2333333332 2246789999999999999999999988 34444 45555556666555555432
Q ss_pred CcchhhhhcchhhHHHHHHHhhCCCcceeehhhcc-------------cccc-ccCCCcEEEEEeCc---------hhhh
Q 004021 231 SEDKKWKEKSLQDKAVDISSILSPKKFRIDLTELG-------------VPLQ-MLNAGFKIVLKTRS---------AGVC 287 (779)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~-------------~~~~-~~~~gs~IivTTR~---------~~va 287 (779)
. ..+..++.. +-. ++..||+. ..|. -...|-.||+|++. ..+.
T Consensus 165 ~------------~~~~Fk~~y-~~d-lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~ 230 (408)
T COG0593 165 N------------EMEKFKEKY-SLD-LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLR 230 (408)
T ss_pred h------------hHHHHHHhh-ccC-eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHH
Confidence 1 111222222 111 11122220 0010 01234489999965 2334
Q ss_pred hhcC-CceeEccCCChHHHHHHHHHHhhccCCCCC
Q 004021 288 DQMD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSH 321 (779)
Q Consensus 288 ~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 321 (779)
+.+. .-.+++.+.+.+.....+.+.+.......+
T Consensus 231 SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~ 265 (408)
T COG0593 231 SRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIP 265 (408)
T ss_pred HHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 4445 678899999999999999998766554333
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.77 E-value=0.0097 Score=64.18 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=38.1
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.+..+++|.+.+.-. -...+-|.++|.+|.|||+||+++++..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999888888876421 1245678899999999999999999876
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.77 E-value=0.00069 Score=77.92 Aligned_cols=160 Identities=22% Similarity=0.263 Sum_probs=88.4
Q ss_pred cccCceeeecCCc-c-cccchhhc-cCccCcEeeccCCcCCC-CCchhhhcCCccCcEeeeccccCCCcccccCCccCCC
Q 004021 535 LVSLHHLDLSLTH-I-RGLPQELK-ALEKLRYLNLEYTHYLS-IIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDD 610 (779)
Q Consensus 535 L~~L~~L~L~~~~-i-~~lp~~~~-~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 610 (779)
-.+|++|++++.. + ...|..++ .|++|++|.+.+-.... .+.. ...+++||..||++++++..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~n------------ 187 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISN------------ 187 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCccC------------
Confidence 3578888888763 2 23444554 47788888887653211 1112 24577888888888877653
Q ss_pred chhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCC
Q 004021 611 AEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSE 690 (779)
Q Consensus 611 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (779)
+..+++|++|+.|.+..-.... .. .+..+.+|++|+.|++|........-- +... .+.
T Consensus 188 ----l~GIS~LknLq~L~mrnLe~e~---~~-----~l~~LF~L~~L~vLDIS~~~~~~~~~i------i~qY----lec 245 (699)
T KOG3665|consen 188 ----LSGISRLKNLQVLSMRNLEFES---YQ-----DLIDLFNLKKLRVLDISRDKNNDDTKI------IEQY----LEC 245 (699)
T ss_pred ----cHHHhccccHHHHhccCCCCCc---hh-----hHHHHhcccCCCeeeccccccccchHH------HHHH----HHh
Confidence 3556677777777665322111 11 122356789999999988554332200 0000 023
Q ss_pred CCCCCCccEEEccCCCCCc-ccc-CCCCCCCCccEEeeeCCC
Q 004021 691 HNFFTQLESLGILYGPDLK-SIY-PNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 691 ~~~~~~L~~L~l~~~~~l~-~l~-~~~~~l~~L~~L~l~~c~ 730 (779)
-..+|+|+.|+.++- .+. .+- .....-|+|+.+.+-+|.
T Consensus 246 ~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred cccCccccEEecCCc-chhHHHHHHHHHhCccHhhhhhhhhh
Confidence 345899999998862 221 111 112244666666555443
No 161
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.75 E-value=0.046 Score=55.47 Aligned_cols=184 Identities=16% Similarity=0.136 Sum_probs=99.4
Q ss_pred ccccchh---hhHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC----EEEEEEe------chH
Q 004021 155 QTIVGQE---KLLPRVWRCITDQ-QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD----VVIWAAV------QTF 220 (779)
Q Consensus 155 ~~~vGr~---~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~----~~~wv~v------~~i 220 (779)
+..||.. +.++++.+++..+ ....+-+.|+|-+|.|||++++.+...+. ....-+ .++.|.. ..+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHH
Confidence 4456654 3445555556554 33456799999999999999999997762 211111 2444444 778
Q ss_pred HHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcc-eeehhhccccc-----------------cccCCCcEEEEEeC
Q 004021 221 QDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKF-RIDLTELGVPL-----------------QMLNAGFKIVLKTR 282 (779)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-~~~ld~l~~~~-----------------~~~~~gs~IivTTR 282 (779)
...|+.+++.+... ..+...+.......++.-.. .++.|++-..+ .+.-.-+-|.|-|+
T Consensus 113 Y~~IL~~lgaP~~~---~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 113 YSAILEALGAPYRP---RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHhCcccCC---CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 99999999987432 22333344444444443333 34444442211 11112334555555
Q ss_pred chhhhhhc-----C-CceeEccCCChHHHH-HHHHHHhhcc--CCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 283 SAGVCDQM-----D-SKNLEVYSLAHDEAW-KLFQEMIERS--TLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 283 ~~~va~~~-----~-~~~~~l~~L~~~~a~-~Lf~~~a~~~--~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
...-+-.. + ...+.++....++-+ .|+......- ...+.-...+++..|...++|+.=-+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 42221111 1 356667776655444 3433221111 11222344788999999999986433
No 162
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.75 E-value=0.018 Score=67.95 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=39.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+++++++++.|... ...-+.++|.+|+|||++|+.+++..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999988766 33445799999999999999999876
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.046 Score=62.69 Aligned_cols=104 Identities=19% Similarity=0.299 Sum_probs=63.1
Q ss_pred ccccchhhhHHHHHHHHhcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHH--HHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQ--DDIG 225 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~--~~i~ 225 (779)
..++|.++.+..+.+.+... .....+.-..|+.|||||.||++++... -+.=+..+-+...+.. ..+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHHH
Confidence 55899999999999988642 3345678889999999999999998876 1111233333333332 2344
Q ss_pred HHhCCCcchhhhhcchhhHHHHHHHhhCCCcc-eeehhhccc
Q 004021 226 KRIGFSEDKKWKEKSLQDKAVDISSILSPKKF-RIDLTELGV 266 (779)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-~~~ld~l~~ 266 (779)
+-+|.+++ +...+. --.|-+..+.++| .+-+|++..
T Consensus 568 rLIGaPPG--YVGyee---GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 568 RLIGAPPG--YVGYEE---GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHhCCCCC--Cceecc---ccchhHhhhcCCCeEEEechhhh
Confidence 45565532 222221 2235566777888 334555533
No 164
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.057 Score=61.92 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=94.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcch
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDK 234 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~ 234 (779)
..++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+++..-.......+ -.. ..+... .+...+-
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~---~pC-~~C~~~---~~~~~Dv 89 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL---EPC-QECIEN---VNNSLDI 89 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC---Cch-hHHHHh---hcCCCcE
Confidence 458999999999999998762 34567899999999999999998765110000000 000 000000 0000000
Q ss_pred -hhhh---cchhhHHHHHHHhhC-----CCcceeehhhcc-----------ccccccCCCcE-EEEEeCchhhhhhcC--
Q 004021 235 -KWKE---KSLQDKAVDISSILS-----PKKFRIDLTELG-----------VPLQMLNAGFK-IVLKTRSAGVCDQMD-- 291 (779)
Q Consensus 235 -~~~~---~~~~~~~~~l~~~L~-----~kr~~~~ld~l~-----------~~~~~~~~gs~-IivTTR~~~va~~~~-- 291 (779)
.... ...++ +..+.+.+. +++-...+|++. ..+........ |++||+...+.....
T Consensus 90 ieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 90 IEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred EEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 0000 01111 122222222 111123333321 11111112333 555665566654332
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChh-HHHHHH
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPL-ALKTVG 346 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL-ai~~~g 346 (779)
...+.+.+++.++....+...+...+...+ .+.+..|++.++|.+- |+..+-
T Consensus 169 cq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 169 VQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred ceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 568899999999999888887655432221 4567889999998664 444433
No 165
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.71 E-value=0.017 Score=63.90 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=38.1
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.+..++++.+.+.-. -...+-|.++|++|.|||++|+++++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 45678999999988876421 1234568899999999999999999987
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.69 E-value=0.012 Score=70.21 Aligned_cols=46 Identities=26% Similarity=0.426 Sum_probs=39.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+++++++++.|... ...-+.++|.+|+|||++|..++...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999866 33345699999999999999998876
No 167
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.081 Score=56.13 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=98.6
Q ss_pred cccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHH
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIG 225 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~ 225 (779)
+..++||+.+++.+.+++... .+...-+-|.|.+|.|||.+...++.+...-...| .++++.. ..++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHHHHHHHH
Confidence 466899999999999999764 34567788999999999999999998872211222 3345544 45555555
Q ss_pred HHh----CCCcchhhhhcchhhHHHHHHHhhCCCcc--eeehhhccc-----------cccc-cCCCcEEEEEeCchhh-
Q 004021 226 KRI----GFSEDKKWKEKSLQDKAVDISSILSPKKF--RIDLTELGV-----------PLQM-LNAGFKIVLKTRSAGV- 286 (779)
Q Consensus 226 ~~l----~~~~~~~~~~~~~~~~~~~l~~~L~~kr~--~~~ld~l~~-----------~~~~-~~~gs~IivTTR~~~v- 286 (779)
..+ ..+ ....+....+..+.++.++ ++++|++.. .|.+ .-+++++|+.---..+
T Consensus 228 ~~~~q~~~s~-------~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 228 SSLLQDLVSP-------GTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHhcCC-------chhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 554 322 1124556677777777664 666665421 1221 2356666654321111
Q ss_pred -----h----hhcC--CceeEccCCChHHHHHHHHHHhhccC
Q 004021 287 -----C----DQMD--SKNLEVYSLAHDEAWKLFQEMIERST 317 (779)
Q Consensus 287 -----a----~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~ 317 (779)
. ...+ ...+..+|-+.++-.++|..+.....
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 1 1012 45677888999999999998876543
No 168
>PRK12377 putative replication protein; Provisional
Probab=96.67 E-value=0.011 Score=59.24 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRI 228 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l 228 (779)
....+.++|.+|+|||+||.++++... .....++++++.+++..|-...
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVPDVMSRLHESY 148 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHHHHHHHHHHHH
Confidence 346789999999999999999999882 3334468888877777665443
No 169
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.095 Score=58.25 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=39.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+.+++..+. -...+-++|..|+||||+|+.++...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999998762 23466789999999999999998765
No 170
>PRK06696 uridine kinase; Validated
Probab=96.63 E-value=0.0029 Score=62.90 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=36.4
Q ss_pred chhhhHHHHHHHHhc-cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 159 GQEKLLPRVWRCITD-QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 159 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.+-+++|.+.+.. ..+...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777888888765 23467899999999999999999999877
No 171
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.56 E-value=0.017 Score=57.77 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=42.5
Q ss_pred hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHh
Q 004021 163 LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRI 228 (779)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l 228 (779)
.+..+.++..........+.++|.+|+|||+||.++++... ..-..++++++.++...+-...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~~~l~~~l~~~~ 146 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITVADIMSAMKDTF 146 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEHHHHHHHHHHHH
Confidence 34444444443222345789999999999999999999872 2334667777777766665443
No 172
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.089 Score=58.58 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=94.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCCEEEEEEechHHHHHHHHhCCCc-
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-HNFDVVIWAAVQTFQDDIGKRIGFSE- 232 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~~F~~~~wv~v~~i~~~i~~~l~~~~- 232 (779)
..++|-+..++.+...+..+. -..++-++|..|+||||+|+.+++...... ..+.. +-+| .-...+........
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p-C~~C--~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP-CDTC--IQCQSALENRHIDII 89 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC-Cccc--HHHHHHhhcCCCeEE
Confidence 458999999999999987662 334678999999999999999887651100 01000 0000 00111110000000
Q ss_pred -chhhhhcchhhHHHHHHHh--h-CCCcc-eeehhhcc-----------ccccccCCCcEEEEEeCc-hhhhhhcC--Cc
Q 004021 233 -DKKWKEKSLQDKAVDISSI--L-SPKKF-RIDLTELG-----------VPLQMLNAGFKIVLKTRS-AGVCDQMD--SK 293 (779)
Q Consensus 233 -~~~~~~~~~~~~~~~l~~~--L-~~kr~-~~~ld~l~-----------~~~~~~~~gs~IivTTR~-~~va~~~~--~~ 293 (779)
.........++..+.+... . ...++ ...+|++. ..+......+++|++|.+ ..+..... ..
T Consensus 90 eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~ 169 (535)
T PRK08451 90 EMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQ 169 (535)
T ss_pred EeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhce
Confidence 0000000111111111110 0 00112 22233321 111112245666666654 33332222 57
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
.+++.+++.++....+.+.+...+... -++....|++.++|.+--+...
T Consensus 170 ~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 170 HFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 889999999999999888776554222 2567889999999988555443
No 173
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.53 E-value=0.016 Score=57.85 Aligned_cols=170 Identities=15% Similarity=0.229 Sum_probs=97.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEE-EEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIW-AAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~w-v~v~~i~~~i~~~l~~~~~ 233 (779)
..++|.+..++-+.+.+... ..+....+|++|.|||+-|.+++... --.+-|.+++- .++ ..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lna-------------Sde 99 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNA-------------SDE 99 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcc-------------ccc
Confidence 56799999999999999884 78899999999999999999998876 32344543321 111 000
Q ss_pred hhhhhcc-hhhH---HHHHHHhh---CC---Ccc-eeehhhc-----------cccccccCCCcEEEEEeCc-hhhhhhc
Q 004021 234 KKWKEKS-LQDK---AVDISSIL---SP---KKF-RIDLTEL-----------GVPLQMLNAGFKIVLKTRS-AGVCDQM 290 (779)
Q Consensus 234 ~~~~~~~-~~~~---~~~l~~~L---~~---kr~-~~~ld~l-----------~~~~~~~~~gs~IivTTR~-~~va~~~ 290 (779)
...+ ..+. ...+.... .+ .+| .+.+|+. ..........++.+..|.. ..+...+
T Consensus 100 ---rGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 100 ---RGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred ---ccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0000 0000 00011001 01 111 2223322 1111122233444433333 3332222
Q ss_pred C--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCC-ChhHHHHHH
Q 004021 291 D--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGR-LPLALKTVG 346 (779)
Q Consensus 291 ~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~~g 346 (779)
. ...|..++|.+++...-++..+...+.+.+ .+..+.|++.++| +--|+.++-
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 456788999999999999999887765444 5678899999998 555555543
No 174
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.46 E-value=0.025 Score=63.62 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=34.8
Q ss_pred ccccchhhhHHHHHHHHh---cc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---DQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++.++++.+.+. .. ....+=+-++|++|+|||+||+++++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 457888877766655443 21 1233458899999999999999999876
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.054 Score=61.95 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=94.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~ 233 (779)
..++|.+..++.|..++..+. -...+-++|..|+||||+|+.+++... -........--|. -..++.+......+.-
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 457999999999999988762 235678999999999999999998762 1111100000000 1222333222111000
Q ss_pred --hhhhhcchhhHHHHHHHhhCCC----cc-eeehhhcc-----------ccccccCCCcEEE-EEeCchhhhhhcC--C
Q 004021 234 --KKWKEKSLQDKAVDISSILSPK----KF-RIDLTELG-----------VPLQMLNAGFKIV-LKTRSAGVCDQMD--S 292 (779)
Q Consensus 234 --~~~~~~~~~~~~~~l~~~L~~k----r~-~~~ld~l~-----------~~~~~~~~gs~Ii-vTTR~~~va~~~~--~ 292 (779)
........++. ..+.+..... ++ .+.+|++. ..+..-.....+| +|+....+...+. .
T Consensus 94 ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc 172 (620)
T PRK14948 94 EIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRC 172 (620)
T ss_pred EEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhhe
Confidence 00000111111 1111211111 11 22333221 1111111233444 4544444443333 5
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
..+.+..++.++....+.+.+...+...+ .+....|++.++|.+..+..
T Consensus 173 ~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 173 QRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 67788899999988888877765432211 46688999999997765543
No 176
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.0063 Score=58.83 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-------chHHHHHHHHhCCC
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-------QTFQDDIGKRIGFS 231 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-------~~i~~~i~~~l~~~ 231 (779)
+++|.++|+.|+||||.+..++... ..+ -..+..++. .+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4799999999999999998888877 322 446777777 34566667777754
No 177
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.035 Score=56.79 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=37.6
Q ss_pred cccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+=|-++.+++|.+.+.-+ =..++=|-++|++|.|||-||++|+++.
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4567899999988876421 1245668899999999999999999987
No 178
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.38 E-value=0.00048 Score=71.06 Aligned_cols=226 Identities=21% Similarity=0.211 Sum_probs=107.5
Q ss_pred cccccccccccc-chhh-cccccCceeeecCC-ccccc--chhhccCccCcEeeccCCcCCCC--CchhhhcCCccCcEe
Q 004021 517 LSLRRNDSLTEL-PSRI-SSLVSLHHLDLSLT-HIRGL--PQELKALEKLRYLNLEYTHYLSI--IPHQLISGFLKLEVL 589 (779)
Q Consensus 517 L~L~~~~~l~~l-p~~i-~~L~~L~~L~L~~~-~i~~l--p~~~~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L 589 (779)
|.+.+|..++.- -.++ ..+.+|++|++..| .++.. -.-...+++|++|++++|..++. +.. ...+..+|+.+
T Consensus 169 L~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~ 247 (483)
T KOG4341|consen 169 LALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKL 247 (483)
T ss_pred hhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchH-Hhccchhhhhh
Confidence 577777444431 1122 35678888888885 45542 22234678889999998865543 222 24566667777
Q ss_pred eeccccCCCcc---------cccCC-------ccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCccc-c
Q 004021 590 RLLECGSEGVT---------KEEGN-------VLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWL-V 652 (779)
Q Consensus 590 ~l~~~~~~~~~---------~~~~~-------~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l-~ 652 (779)
.+.+|.-.+.. .++-. ...+ ......-..+..|+.|+.+. +.++....+..+ .
T Consensus 248 ~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD--~~~~~i~~~c~~lq~l~~s~--------~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 248 SLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD--EDLWLIACGCHALQVLCYSS--------CTDITDEVLWALGQ 317 (483)
T ss_pred hhcccccccHHHHHHHhccChHhhccchhhhccccc--hHHHHHhhhhhHhhhhcccC--------CCCCchHHHHHHhc
Confidence 66665322200 00000 0000 00000001122333333331 111111111111 2
Q ss_pred cccCcceEEeccccccceeccc--------------ccccCcccchhhccCCCCCCCCccEEEccCCCCCccc-----cC
Q 004021 653 FVQNLKELEIIVCTEMEEIICV--------------DKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSI-----YP 713 (779)
Q Consensus 653 ~l~~L~~L~L~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~ 713 (779)
+.++|+.|.++.|......-.. +.++.+.. ..+-....++|.|+.|.++.|.....- ..
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 3456666666666543332100 00000000 000123356888999999887665543 22
Q ss_pred CCCCCCCccEEeeeCCCCCCCCC--CCCCCcccccEEEechHhh
Q 004021 714 NPLHFPKLKKIGVYGCPKLKKLP--INSSSAKERRVVIEGLKEW 755 (779)
Q Consensus 714 ~~~~l~~L~~L~l~~c~~L~~lP--~~~~~~~~~~l~i~~~~~~ 755 (779)
...++..|+.+.+.+||.+..-- ..-....++.+++.+|...
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 33467789999999998765411 1111223366777777544
No 179
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.15 Score=49.97 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=90.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-----chHHHHHHHHhCCCcchhhh-hcchhhHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-----QTFQDDIGKRIGFSEDKKWK-EKSLQDKAVDISS 250 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-----~~i~~~i~~~l~~~~~~~~~-~~~~~~~~~~l~~ 250 (779)
+.+++.++|--|.|||.++++..... . +.=-+++.+.. ..+...|...+..+ ..+. ....++....+..
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~-~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL-N--EDQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc-C--CCceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHHH
Confidence 45699999999999999999665554 1 11112222222 55667777777653 1111 1123334444444
Q ss_pred hhC-CCc-ceeehhhc---ccc-------cc----ccCCCcEEEEEeC----c---hhhhhhcC--Cce-eEccCCChHH
Q 004021 251 ILS-PKK-FRIDLTEL---GVP-------LQ----MLNAGFKIVLKTR----S---AGVCDQMD--SKN-LEVYSLAHDE 304 (779)
Q Consensus 251 ~L~-~kr-~~~~ld~l---~~~-------~~----~~~~gs~IivTTR----~---~~va~~~~--~~~-~~l~~L~~~~ 304 (779)
..+ ++| .....|+. ... |. ....--+|+..-. . ..+..... ... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 443 455 32222211 000 00 0001112222211 0 11112222 223 8999999999
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHH
Q 004021 305 AWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGR 347 (779)
Q Consensus 305 a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~ 347 (779)
...++..+..+...+.+---.+....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9998888876654333333356778899999999999987654
No 180
>PRK07667 uridine kinase; Provisional
Probab=96.37 E-value=0.0051 Score=59.59 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 164 LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.+.+.+....+...+|+|-|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456777776655566899999999999999999999876
No 181
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.35 E-value=0.078 Score=60.15 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=92.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcch
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDK 234 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~ 234 (779)
.+++|.+..++.+.+++..+. -.+.+-++|..|+||||+|+.+++.. .-...-+.. -...-.....|......+ -.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal-~c~~~~~~~-pC~~C~~C~~i~~g~~~d-v~ 91 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAV-NCLNPPDGE-PCNECEICKAITNGSLMD-VI 91 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCC-CCCccHHHHHHhcCCCCC-eE
Confidence 568999999999999998763 33567789999999999999998765 111100000 000001122221110000 00
Q ss_pred hhhh---cchhhHHHHHHHhhC----CCcc-eeehhhcc-----------ccccccCCCcE-EEEEeCchhhhhhcC--C
Q 004021 235 KWKE---KSLQDKAVDISSILS----PKKF-RIDLTELG-----------VPLQMLNAGFK-IVLKTRSAGVCDQMD--S 292 (779)
Q Consensus 235 ~~~~---~~~~~~~~~l~~~L~----~kr~-~~~ld~l~-----------~~~~~~~~gs~-IivTTR~~~va~~~~--~ 292 (779)
..+. ...+ .+..+.+... ..+| ...+|++. ..+........ |+.||....+..... .
T Consensus 92 eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc 170 (559)
T PRK05563 92 EIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRC 170 (559)
T ss_pred EeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHh
Confidence 0000 0111 1112222211 1112 22233221 11111112333 444555555544332 5
Q ss_pred ceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 293 KNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 293 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
..+...+++.++....+...+...+...+ .+....|++.++|-+.-+.
T Consensus 171 ~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 171 QRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 67889999999999888887765442222 4667888999998775443
No 182
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.011 Score=52.31 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcc
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKF 257 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 257 (779)
.+-|.|.|.+|+||||||.+++... .| -|+++.++.++=--.-+.+..-+...-+.+.+.+.|...+.+..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~ 78 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGN 78 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCc
Confidence 4568899999999999999998654 22 255553333221001111111111234556667777777766666
Q ss_pred eeehhhccccccccCCCcEEEEEeCchhhhhhcCCceeEccCCChH
Q 004021 258 RIDLTELGVPLQMLNAGFKIVLKTRSAGVCDQMDSKNLEVYSLAHD 303 (779)
Q Consensus 258 ~~~ld~l~~~~~~~~~gs~IivTTR~~~va~~~~~~~~~l~~L~~~ 303 (779)
..+|-.- ..||..--.--+++||-+..+-..+..+.|.-..+.+.
T Consensus 79 IVDyHgC-d~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eN 123 (176)
T KOG3347|consen 79 IVDYHGC-DFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKEN 123 (176)
T ss_pred EEeeccc-CccchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhh
Confidence 6666542 22333223335666776666555554444544444333
No 183
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.30 E-value=0.068 Score=60.42 Aligned_cols=180 Identities=11% Similarity=0.084 Sum_probs=93.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~ 233 (779)
.+++|-+..++.+..++..+. -.+.+-++|..|+||||+|+.+++.. .-....... -|- -.....|...-.....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L-~c~~~~~~~--pC~~C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCL-NCVNGPTPM--PCGECSSCKSIDNDNSLDVI 91 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh-ccccCCCCC--CCccchHHHHHHcCCCCCeE
Confidence 468999999999999998762 33568899999999999999998876 111100000 000 0011111110000000
Q ss_pred --hhhhhcchhhHHHHHHHhh------CCCcceeehhhc-----------cccccccCCCcEEEEE-eCchhhhhhcC--
Q 004021 234 --KKWKEKSLQDKAVDISSIL------SPKKFRIDLTEL-----------GVPLQMLNAGFKIVLK-TRSAGVCDQMD-- 291 (779)
Q Consensus 234 --~~~~~~~~~~~~~~l~~~L------~~kr~~~~ld~l-----------~~~~~~~~~gs~IivT-TR~~~va~~~~-- 291 (779)
........++.. .+.+.+ .+++ ...+|++ ...+......+.+|.+ |....+.....
T Consensus 92 ~idgas~~~vddIr-~l~e~~~~~p~~~~~K-VvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR 169 (563)
T PRK06647 92 EIDGASNTSVQDVR-QIKEEIMFPPASSRYR-VYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR 169 (563)
T ss_pred EecCcccCCHHHHH-HHHHHHHhchhcCCCE-EEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh
Confidence 000001111111 111111 1122 2222221 1112112234445444 44444543333
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
...+++.+++.++-...+.+.+...+... -++....|++.++|.+-.+.
T Consensus 170 c~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 170 CQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 56789999999999888888775544222 25677889999999775444
No 184
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.11 Score=59.33 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=93.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCE-EEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDV-VIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~-~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
.+++|.+..++.|.+.+..+. -...+-++|..|+||||+|+.+++.... ....+. -+=. ......|...-..+ -
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~~~c~~--c~~c~~i~~g~~~d-~ 90 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNC-EQGLTAEPCNV--CPPCVEITEGRSVD-V 90 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCCCCCCc--cHHHHHHhcCCCCC-e
Confidence 568999999999999988762 2356789999999999999999877511 111000 0000 01111111100000 0
Q ss_pred hhhh---hcchhhHHHHHHHhhCC----Ccc-eeehhhcc-----------ccccccCCCcEEE-EEeCchhhhhhcC--
Q 004021 234 KKWK---EKSLQDKAVDISSILSP----KKF-RIDLTELG-----------VPLQMLNAGFKIV-LKTRSAGVCDQMD-- 291 (779)
Q Consensus 234 ~~~~---~~~~~~~~~~l~~~L~~----kr~-~~~ld~l~-----------~~~~~~~~gs~Ii-vTTR~~~va~~~~-- 291 (779)
...+ ....++ +..+.+.++- .+| ...+|++. ..+......+.+| +||....+.....
T Consensus 91 ~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR 169 (576)
T PRK14965 91 FEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 (576)
T ss_pred eeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh
Confidence 0000 000111 1112222211 112 22223221 1111112344444 5555555654433
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCCh-hHHHHH
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLP-LALKTV 345 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP-Lai~~~ 345 (779)
...+++.+++.++....+...+...+...+ .+....|++.++|.. .|+..+
T Consensus 170 c~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 170 CQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 567889999999998888877655442222 466788999999855 454444
No 185
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.28 E-value=0.088 Score=61.54 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=38.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+++++++++.|... ...-+.++|.+|+|||++|+.+++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999998875 22344589999999999999999875
No 186
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0019 Score=63.00 Aligned_cols=83 Identities=22% Similarity=0.164 Sum_probs=41.9
Q ss_pred cccCceeeecCCcccccchhhccCccCcEeeccCC--cCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCch
Q 004021 535 LVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYT--HYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAE 612 (779)
Q Consensus 535 L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~--~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 612 (779)
+.+|+.|++.+..++.+- .+-.|++|+.|.++.| .-...++.- ..++++|++|++++|++.- .
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~-------------l 106 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD-------------L 106 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc-------------c
Confidence 344444444444433321 2334566666666666 222333332 3455667777776666552 2
Q ss_pred hhHHhhcCCCCCCceeEEee
Q 004021 613 PLMRELLGLKRLNVLSWSFR 632 (779)
Q Consensus 613 ~~~~~l~~L~~L~~L~l~~~ 632 (779)
..+..+..+.+|..|++..+
T Consensus 107 stl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cccchhhhhcchhhhhcccC
Confidence 33444555556666665543
No 187
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0076 Score=54.31 Aligned_cols=44 Identities=23% Similarity=0.460 Sum_probs=36.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCC
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFS 231 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~ 231 (779)
+|.|.|.+|+||||+|+.++++. .-. .|+...++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~-----~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLK-----LVSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCc-----eeeccHHHHHHHHHcCCC
Confidence 68999999999999999999987 122 355578999999998876
No 188
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.16 E-value=0.0026 Score=37.01 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=14.6
Q ss_pred cCceeeecCCcccccchhhccC
Q 004021 537 SLHHLDLSLTHIRGLPQELKAL 558 (779)
Q Consensus 537 ~L~~L~L~~~~i~~lp~~~~~L 558 (779)
+|++|+|++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677777777777777666543
No 189
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.15 E-value=0.0061 Score=66.91 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=40.8
Q ss_pred cccchhhhHHHHHHHHhc----cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITD----QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+++|.++.+++|++.|.. -+...+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 579999999999999943 24456899999999999999999999876
No 190
>CHL00176 ftsH cell division protein; Validated
Probab=96.14 E-value=0.083 Score=60.55 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=34.7
Q ss_pred ccccchhhhHHHHHHHH---hccC-------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCI---TDQQ-------KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++.++++.+.+ ...+ ...+-|.++|.+|+|||+||+++++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45788877666655543 3321 124568999999999999999998876
No 191
>PHA00729 NTP-binding motif containing protein
Probab=96.13 E-value=0.016 Score=56.58 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.3
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 166 RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++.+... +...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344445444 55678999999999999999998875
No 192
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.22 Score=52.36 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=45.0
Q ss_pred CCcEEEEEeCc-hhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 273 AGFKIVLKTRS-AGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 273 ~gs~IivTTR~-~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
.++.+|+||.+ ..+..... ...+.+.+++.+++.+.+....... ..+.+..++..++|.|..+..+
T Consensus 135 ~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 135 GDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 45666666666 44544433 5788999999999998887653111 1344667899999999765544
No 193
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.10 E-value=0.032 Score=57.51 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=56.7
Q ss_pred cccccchhhhHHHHHHHHhccCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHHH
Q 004021 154 EQTIVGQEKLLPRVWRCITDQQKN-RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIGK 226 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~~ 226 (779)
++.|.+|+.++..+..++.+.+.. +..|-|+|-.|.|||.+.+.+.+.. ..+ .+|+++ +.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~~---~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NLE---NVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CCc---ceeeehHHhccHHHHHHHHHH
Confidence 477899999999999999877543 3456899999999999999999876 223 468888 667888888
Q ss_pred HhC
Q 004021 227 RIG 229 (779)
Q Consensus 227 ~l~ 229 (779)
+.+
T Consensus 79 ~~~ 81 (438)
T KOG2543|consen 79 KSQ 81 (438)
T ss_pred Hhc
Confidence 875
No 194
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.0076 Score=54.32 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWA 215 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv 215 (779)
.--|.|.||+|+||||+++.+.+.. +. ..|...-++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L-~~-~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL-RE-KGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH-Hh-cCceeeeEE
Confidence 3468999999999999999999887 32 336543333
No 195
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.08 E-value=0.033 Score=63.29 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=40.3
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++.++++..++... ....+++.|+|.+|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999998764 2234689999999999999999998765
No 196
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.03 E-value=0.15 Score=53.34 Aligned_cols=180 Identities=13% Similarity=0.152 Sum_probs=96.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccc-------------cCCCCEEEEEEe----
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ-------------QHNFDVVIWAAV---- 217 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~-------------~~~F~~~~wv~v---- 217 (779)
..++|.+..++.+.+.+..+. -.+..-++|..|+||+++|..+++..-.. ..|.| ..|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccc
Confidence 457999999999999998762 24789999999999999998887764111 11222 233321
Q ss_pred --chHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcc------eeehh--hc--------cccccccCCCcEEEE
Q 004021 218 --QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKF------RIDLT--EL--------GVPLQMLNAGFKIVL 279 (779)
Q Consensus 218 --~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~------~~~ld--~l--------~~~~~~~~~gs~Iiv 279 (779)
..+-.+-+...+.. .........+ .+..+.+.+..+.+ .+.++ .+ ...+-.-.++.-|++
T Consensus 82 ~g~~~~~~~~~~~~~~-~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi 159 (314)
T PRK07399 82 QGKLITASEAEEAGLK-RKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILI 159 (314)
T ss_pred cccccchhhhhhcccc-ccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 00101111111100 0000001111 22344444543333 22221 11 111111113333444
Q ss_pred EeCchhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 280 KTRSAGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 280 TTR~~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
|++-..+..... ...+.+.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 544455555443 67889999999999999987643211 111236889999999976554
No 197
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.01 E-value=0.012 Score=63.89 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=39.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||++.++.+...+..+ .-|-|.|.+|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHh
Confidence 45899999999999988766 567899999999999999999876
No 198
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.058 Score=54.30 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccc--cCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQ--QHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~--~~~F~~~~wv~v 217 (779)
-++|-++|++|.|||+|.++++++. .+ .+.+....-+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEE
Confidence 4789999999999999999999987 43 334444444444
No 199
>PRK10536 hypothetical protein; Provisional
Probab=95.97 E-value=0.034 Score=55.21 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=37.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+.+|......++.++.+. .+|.+.|..|.|||+||.+++.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578888888888888764 599999999999999999998864
No 200
>PRK06547 hypothetical protein; Provisional
Probab=95.94 E-value=0.011 Score=55.79 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+...+... ...+|+|.|.+|+||||+|+.+....
T Consensus 6 ~~~~~~~~--~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGG--GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcC--CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444433 67899999999999999999998765
No 201
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.1 Score=57.39 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..+|+|+|.+|+||||++..++... ..+.....+..++.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdt 388 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTT 388 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEec
Confidence 4799999999999999999988765 21222234555554
No 202
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.0046 Score=60.40 Aligned_cols=63 Identities=27% Similarity=0.390 Sum_probs=46.5
Q ss_pred ccccCceeeecCC--ccc-ccchhhccCccCcEeeccCCcC--CCCCchhhhcCCccCcEeeeccccCCC
Q 004021 534 SLVSLHHLDLSLT--HIR-GLPQELKALEKLRYLNLEYTHY--LSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 534 ~L~~L~~L~L~~~--~i~-~lp~~~~~L~~L~~L~l~~~~~--l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
.|++|++|.++.| ++. .++.-..++++|++|++++|.. ++.+++ +..+.+|..|+++.|....
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCCccc
Confidence 5778999999988 443 3666666779999999999842 334555 6778888888888886553
No 203
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.93 E-value=0.23 Score=53.64 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
...+|.++|.+|+||||+|..++... . +..+ .++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l-~-~~G~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY-Q-RKGF-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H-HCCC-CEEEEcC
Confidence 46899999999999999999988766 3 2223 4555655
No 204
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.32 Score=51.74 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..++.++|+.|+||||++..++... ..+.....+..++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~ 175 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTT 175 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEec
Confidence 4799999999999999999998876 21212245666666
No 205
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.83 E-value=0.17 Score=49.47 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=38.7
Q ss_pred ccccchhhhHHH---HHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPR---VWRCITDQ----QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++||.++.+.+ |+++|.++ +-.++-|-.+|++|.|||-+|+++++..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 457898877654 66777664 3457889999999999999999999987
No 206
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.78 E-value=0.012 Score=56.05 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
...+|.+.|+.|+||||+|+.++... ...+...+++..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~~ 43 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLDG 43 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEec
Confidence 45699999999999999999999987 345555555543
No 207
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.76 E-value=0.0076 Score=53.94 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.|.|.+|+||||+|+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998873
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.76 E-value=0.14 Score=60.74 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=36.2
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.+..+++|.+.+.- +-...+-|.++|.+|+|||++|+++++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 3467888888877776542 11234558899999999999999999976
No 209
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.73 E-value=0.31 Score=53.20 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.+.+|.++|.+|+||||+|..++... .. ..+ .++.|+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~ 131 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAA 131 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecC
Confidence 46799999999999999999999877 32 223 4444555
No 210
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.73 E-value=0.83 Score=45.05 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=37.7
Q ss_pred ccccchhhhHHHHHHHHh---ccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---DQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.|..++.|++-.. .+. ...-+-+||..|.|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHH
Confidence 678999999988877543 232 44567789999999999999999887
No 211
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.70 E-value=0.014 Score=58.20 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 176 KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....+|+|.|..|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998876
No 212
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.65 E-value=0.012 Score=70.15 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=39.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+.+++++++.|... ...-+.++|.+|+|||++|..++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 34799999999999999776 34456699999999999999999876
No 213
>PRK08233 hypothetical protein; Provisional
Probab=95.64 E-value=0.01 Score=56.99 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|.|.+|+||||||..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998876
No 214
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.034 Score=53.61 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=44.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHH-----HHHHhCCCcchhhhhcchhhHHHHHHHh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDD-----IGKRIGFSEDKKWKEKSLQDKAVDISSI 251 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~-----i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 251 (779)
.+.+|+|.|.+|+||||+|+.++..+ ... .+.-++......+ ........ -..+..-+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n-~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVE--KVVVISLDDYYKDQSHLPFEERNKIN-YDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcC--cceEeeccccccchhhcCHhhcCCcC-ccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999988 323 1222222111111 11111111 1112345566677788888
Q ss_pred hCCCcc
Q 004021 252 LSPKKF 257 (779)
Q Consensus 252 L~~kr~ 257 (779)
++++..
T Consensus 81 ~~g~~v 86 (218)
T COG0572 81 KQGKPV 86 (218)
T ss_pred HcCCcc
Confidence 888774
No 215
>PRK04040 adenylate kinase; Provisional
Probab=95.62 E-value=0.036 Score=53.24 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCC
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGF 230 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~ 230 (779)
..+|+|+|++|+||||+++.+.... . ..+ -+++..++...++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l-~--~~~---~~~~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL-K--EDY---KIVNFGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh-c--cCC---eEEecchHHHHHHHHcCC
Confidence 3689999999999999999998876 2 122 235556777777776664
No 216
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.61 E-value=0.051 Score=56.46 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=56.8
Q ss_pred HHHHHh-ccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcchh--hhhcchh
Q 004021 167 VWRCIT-DQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSEDKK--WKEKSLQ 242 (779)
Q Consensus 167 l~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~~~--~~~~~~~ 242 (779)
|-..|. .+=+.-+++-|+|.+|+||||||.+++... ...-..++|++. ..+-...++.++.+.+.- ....+.+
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~e 119 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGE 119 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHH
Confidence 334444 332345799999999999999999987765 233456788888 333345566665542111 0122344
Q ss_pred hHHHHHHHhhCCCcc-eeehhhcccc
Q 004021 243 DKAVDISSILSPKKF-RIDLTELGVP 267 (779)
Q Consensus 243 ~~~~~l~~~L~~kr~-~~~ld~l~~~ 267 (779)
+....+...++...+ ++++|.+...
T Consensus 120 q~l~i~~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 120 QALEIADSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHHHHHHHHhccCCCEEEEcchHhh
Confidence 455555444444434 5566665443
No 217
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.59 E-value=0.011 Score=46.36 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 218
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.58 E-value=0.0025 Score=71.78 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=9.7
Q ss_pred CCccEEeeeCCCCCC
Q 004021 719 PKLKKIGVYGCPKLK 733 (779)
Q Consensus 719 ~~L~~L~l~~c~~L~ 733 (779)
.+|+.|.+..|....
T Consensus 401 ~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVT 415 (482)
T ss_pred CccceEecccCcccc
Confidence 336777777776544
No 219
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.57 E-value=0.01 Score=57.60 Aligned_cols=23 Identities=48% Similarity=0.709 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
||+|.|.+|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999887
No 220
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.0011 Score=64.77 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=16.4
Q ss_pred ccccCceeeecCCcccccchhhccCccCcEeeccCC
Q 004021 534 SLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYT 569 (779)
Q Consensus 534 ~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~ 569 (779)
+|+.|++|.|+-|.|+.|. .+..+++|+.|+|+.|
T Consensus 39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN 73 (388)
T ss_pred hcccceeEEeeccccccch-hHHHHHHHHHHHHHhc
Confidence 4444555555544444442 2444444444444444
No 221
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.54 E-value=0.012 Score=57.89 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998876
No 222
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.53 E-value=0.075 Score=48.28 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=85.4
Q ss_pred CCcccccchhhHHHHHHHHHhhhhcchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCchhHHHHHHHHHHH
Q 004021 2 GNLISTSLPPDLFSRTLHRVGEQANYVWGLKKNLEGLKTEMRKLTRTRDDLVNKVEVEEQPRRTRRTNRVAGWLEDVQKL 81 (779)
Q Consensus 2 ~~~~~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~~Wl~~l~~~ 81 (779)
|+.++.|+++.+++.+...+.+...-...++.-++.|...++.+.-++++++..-..-+ ..-+.-++++.+.
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld--------~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELD--------RPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcC--------CchhHHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999766533222 2225667888899
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCccccccccchHHHHHHHHHHHHHHH
Q 004021 82 GTEFTELQQVRAQEMDRLCLGGLCSKNLVSSYNYGREVVELTDRVINLN 130 (779)
Q Consensus 82 ~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 130 (779)
..+++++++.|..-. .+++...++.+++|+++.+.+....
T Consensus 75 L~~g~~LV~k~sk~~---------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 75 LEKGKELVEKCSKVR---------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHhcccc---------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 999999998764211 1234455667788887777777653
No 223
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.52 E-value=0.13 Score=60.87 Aligned_cols=49 Identities=31% Similarity=0.427 Sum_probs=39.1
Q ss_pred cccccchhhhHHHHHHHHhcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...++|.++.++.+.+.+... .....++.++|+.|+|||+||+.++...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 356789999999998887642 1233468899999999999999998876
No 224
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.50 E-value=0.017 Score=55.12 Aligned_cols=46 Identities=28% Similarity=0.322 Sum_probs=39.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++||-++.++.+.-...++ +.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 46899999999887777666 78889999999999999998888776
No 225
>PRK10867 signal recognition particle protein; Provisional
Probab=95.46 E-value=0.33 Score=52.85 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.+.+|.++|.+|+||||.|..++... ..+ .-..++.|+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l-~~~-~G~kV~lV~~ 137 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL-KKK-KKKKVLLVAA 137 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHh-cCCcEEEEEc
Confidence 46899999999999999998888766 222 1233555555
No 226
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.46 E-value=0.026 Score=50.29 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 162 KLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++.+++.+.|...=....+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555554422234699999999999999999999876
No 227
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.43 E-value=0.014 Score=57.33 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|.+|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 228
>PRK06762 hypothetical protein; Provisional
Probab=95.43 E-value=0.014 Score=55.15 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998775
No 229
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.42 E-value=0.019 Score=60.69 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=39.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++..+.+..++..+. -..++.++|.+|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 567999999999999988652 34677779999999999999998875
No 230
>PTZ00301 uridine kinase; Provisional
Probab=95.41 E-value=0.014 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 231
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.39 E-value=0.011 Score=57.86 Aligned_cols=93 Identities=20% Similarity=0.102 Sum_probs=46.0
Q ss_pred hhcccccCceeeecCCcccc-cch----hhccCccCcEeeccCCcCCCCCchhhhc-------------CCccCcEeeec
Q 004021 531 RISSLVSLHHLDLSLTHIRG-LPQ----ELKALEKLRYLNLEYTHYLSIIPHQLIS-------------GFLKLEVLRLL 592 (779)
Q Consensus 531 ~i~~L~~L~~L~L~~~~i~~-lp~----~~~~L~~L~~L~l~~~~~l~~lp~~~i~-------------~L~~L~~L~l~ 592 (779)
.+-++++|+..+|+.|.+.. .|+ .|++-+.|.+|.+++| .++.+..+-|+ .-+.|++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 34556666777776664432 222 3455566667777666 34433322122 23445555555
Q ss_pred cccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecc
Q 004021 593 ECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSS 634 (779)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 634 (779)
.|++...+ .......|....+|+.+.+..|++
T Consensus 166 rNRlengs----------~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 166 RNRLENGS----------KELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred cchhccCc----------HHHHHHHHHhhcCceeEEeeecCc
Confidence 55544311 112222344445666666665554
No 232
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.38 E-value=0.078 Score=55.06 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHh-ccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcchh--hhhcchhh
Q 004021 168 WRCIT-DQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSEDKK--WKEKSLQD 243 (779)
Q Consensus 168 ~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~~~--~~~~~~~~ 243 (779)
-..|. .+=+.-+++-|+|.+|+||||||.++.... ...-..++|++. ..+-...++.++.+...- ....+.++
T Consensus 44 D~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq 120 (321)
T TIGR02012 44 DLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQ 120 (321)
T ss_pred HHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHH
Confidence 34443 332355799999999999999999987766 233456788888 333334455665541110 12233444
Q ss_pred HHHHHHHhhCCCcc-eeehhhccc
Q 004021 244 KAVDISSILSPKKF-RIDLTELGV 266 (779)
Q Consensus 244 ~~~~l~~~L~~kr~-~~~ld~l~~ 266 (779)
....+...++...+ ++++|.+..
T Consensus 121 ~l~~~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 121 ALEIAETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHHHHHhhccCCcEEEEcchhh
Confidence 44444444443333 455565543
No 233
>PRK09354 recA recombinase A; Provisional
Probab=95.35 E-value=0.079 Score=55.52 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=57.9
Q ss_pred HHHHHh-ccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcchh--hhhcchh
Q 004021 167 VWRCIT-DQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSEDKK--WKEKSLQ 242 (779)
Q Consensus 167 l~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~~~--~~~~~~~ 242 (779)
|-..|. .+=..-+++-|+|.+|+||||||.+++... ...-..++||+. ..+-...++.++.+.+.- ....+.+
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~E 124 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGE 124 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHH
Confidence 334454 333355799999999999999999987765 234467889998 334445666666542111 1223344
Q ss_pred hHHHHHHHhhCCCcc-eeehhhcccc
Q 004021 243 DKAVDISSILSPKKF-RIDLTELGVP 267 (779)
Q Consensus 243 ~~~~~l~~~L~~kr~-~~~ld~l~~~ 267 (779)
+....+...++...+ ++++|.+...
T Consensus 125 q~l~i~~~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 125 QALEIADTLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHHHHHHHHhhcCCCCEEEEeChhhh
Confidence 445545444444333 5566665433
No 234
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.35 E-value=0.014 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 235
>PRK03839 putative kinase; Provisional
Probab=95.31 E-value=0.014 Score=55.81 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.24 Score=53.34 Aligned_cols=150 Identities=18% Similarity=0.141 Sum_probs=74.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechH--------HHHHHHHhCCCcchhhhhcchhhHHHH
Q 004021 176 KNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTF--------QDDIGKRIGFSEDKKWKEKSLQDKAVD 247 (779)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i--------~~~i~~~l~~~~~~~~~~~~~~~~~~~ 247 (779)
....-+.+.|.+|+|||+||..++.. ..|..+--++..++ ...|-+.+....... -..-.-+-+++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~-lsiivvDdiEr 609 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP-LSIIVVDDIER 609 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc-ceEEEEcchhh
Confidence 35667788999999999999999765 46776544444111 111111111000000 00000000111
Q ss_pred HHHhh-CCCcc-eeehhhc---cccccccCCCcEEEEEeCchhhhhhcC-----CceeEccCCCh-HHHHHHHHHHhhcc
Q 004021 248 ISSIL-SPKKF-RIDLTEL---GVPLQMLNAGFKIVLKTRSAGVCDQMD-----SKNLEVYSLAH-DEAWKLFQEMIERS 316 (779)
Q Consensus 248 l~~~L-~~kr~-~~~ld~l---~~~~~~~~~gs~IivTTR~~~va~~~~-----~~~~~l~~L~~-~~a~~Lf~~~a~~~ 316 (779)
|.++. -+-|| ..++..+ ....|..++.--|+-||-...|...|+ ...|+++.++. ++..+.++..-.
T Consensus 610 LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~-- 687 (744)
T KOG0741|consen 610 LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNI-- 687 (744)
T ss_pred hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccC--
Confidence 11111 12222 1111111 111122233344566888888988887 46789999987 677777665421
Q ss_pred CCCCCCChHHHHHHHHHHh
Q 004021 317 TLDSHTSIPELAETLAREC 335 (779)
Q Consensus 317 ~~~~~~~l~~~~~~I~~~c 335 (779)
-.+.+.+.++.+...+|
T Consensus 688 --fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 688 --FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred --CCcchhHHHHHHHhccc
Confidence 12344566677777666
No 237
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.24 E-value=0.076 Score=53.31 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCC----CCEEEEEEe
Q 004021 169 RCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHN----FDVVIWAAV 217 (779)
Q Consensus 169 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~----F~~~~wv~v 217 (779)
+.|.++=..-.++.|+|.+|+|||+||.+++... ..... -..++|++.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeC
Confidence 3344333345799999999999999999997543 11221 367889988
No 238
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.24 E-value=0.042 Score=54.33 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
-.++|+|..|+|||||+..+.... ...|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 467899999999999999998877 678888877765
No 239
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.22 E-value=0.016 Score=52.04 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.|+|.+|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 240
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.19 E-value=0.017 Score=55.67 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.++|.|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 241
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.16 E-value=0.022 Score=68.27 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=38.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+.++++++..|... ...-+.++|.+|+|||++|..++++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999776 33445589999999999999998876
No 242
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.15 E-value=0.016 Score=56.70 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=57.4
Q ss_pred cccccccccc-----ccchhhcccccCceeeecCCcc----cccc-------hhhccCccCcEeeccCCcCCCCCchh--
Q 004021 517 LSLRRNDSLT-----ELPSRISSLVSLHHLDLSLTHI----RGLP-------QELKALEKLRYLNLEYTHYLSIIPHQ-- 578 (779)
Q Consensus 517 L~L~~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i----~~lp-------~~~~~L~~L~~L~l~~~~~l~~lp~~-- 578 (779)
++|||| .+. .+...|.+-.+|+..+++.-.. .++| +.+-+|++|+..+|+.|-+-...|+.
T Consensus 35 vdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 35 VDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 455555 443 2455677778899888876421 2244 34678999999999999766666653
Q ss_pred -hhcCCccCcEeeeccccCCC
Q 004021 579 -LISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 579 -~i~~L~~L~~L~l~~~~~~~ 598 (779)
.|++-+.|.||.+++|++-.
T Consensus 114 d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HHHhcCCCceeEEeecCCCCc
Confidence 46788999999999997654
No 243
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.12 E-value=0.027 Score=51.01 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..+.|+|.+|+||||+|+.+++.. ......++++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~ 38 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDG 38 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECC
Confidence 578999999999999999999887 222233555555
No 244
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.10 E-value=0.4 Score=53.19 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=34.2
Q ss_pred ccccchhhhHHHHHHHHh---c-----cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---D-----QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~-----~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.+..++.+.+... . +-...+-|-++|++|.|||.+|+++++..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456787776666554321 1 11234668899999999999999999876
No 245
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.10 E-value=0.3 Score=57.94 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=37.9
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.+..++++.+.+.-. -...+-|.++|.+|+|||+||+++++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 34789999999988876421 1234568899999999999999999876
No 246
>PRK00625 shikimate kinase; Provisional
Probab=95.05 E-value=0.02 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 247
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.02 E-value=0.032 Score=51.16 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.+|-|.|.+|+||||||+++.+.. . ..-..+.++..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L-~--~~g~~~~~LDg 38 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL-F--ARGIKVYLLDG 38 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-H--HTTS-EEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEecC
Confidence 589999999999999999999988 2 33344545544
No 248
>PRK05439 pantothenate kinase; Provisional
Probab=95.01 E-value=0.11 Score=53.71 Aligned_cols=28 Identities=36% Similarity=0.380 Sum_probs=24.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 175 QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 175 ~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+..-+|+|.|.+|+||||+|+.+....
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3466799999999999999999988765
No 249
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.0023 Score=62.60 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=67.0
Q ss_pred CCccEEEcccccccccccCc---c--cccccccccccccchhhcccccCceeeecCCcccccc--hhhccCccCcEeecc
Q 004021 495 EGAKRISLMANEIESLSEIP---T--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLP--QELKALEKLRYLNLE 567 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~~---~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~l~ 567 (779)
.+++.|++.++.+.++.-.. . +|.||-| .|+.+. .+..+++|+.|+|+.|.|..+- ..+.+|++|++|-|.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34555666666665544221 1 4677777 777663 4678899999999999888764 357899999999998
Q ss_pred CCcCCCCCchh----hhcCCccCcEeee
Q 004021 568 YTHYLSIIPHQ----LISGFLKLEVLRL 591 (779)
Q Consensus 568 ~~~~l~~lp~~----~i~~L~~L~~L~l 591 (779)
.|.....-+.. ++.-|+||+.|+-
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhccC
Confidence 88765554442 4667888888863
No 250
>PRK06217 hypothetical protein; Validated
Probab=94.96 E-value=0.021 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|++|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 251
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.87 E-value=1.5 Score=43.61 Aligned_cols=214 Identities=14% Similarity=0.201 Sum_probs=115.8
Q ss_pred ccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcc---ccCCCCEEEEEEe----------------
Q 004021 157 IVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCH---QQHNFDVVIWAAV---------------- 217 (779)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~---~~~~F~~~~wv~v---------------- 217 (779)
+.++++....+......+ +.+-.-++|+.|.||-|.+..+.+..-. .+-.-+...|.+-
T Consensus 15 l~~~~e~~~~Lksl~~~~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHHHHHHHHHHhcccC--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 577777777777766544 7888999999999999988777665411 0112244444443
Q ss_pred -----------chHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCccee-eh---hhcc--------ccccccCCC
Q 004021 218 -----------QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKFRI-DL---TELG--------VPLQMLNAG 274 (779)
Q Consensus 218 -----------~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~-~l---d~l~--------~~~~~~~~g 274 (779)
+-+.++|+++...... .+.-..+.|.. ++ |.+- .....-...
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~q---------------ie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQ---------------IETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcc---------------hhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 1223333333221100 00001223322 11 1110 001112356
Q ss_pred cEEEEEeCch-hhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCC-ChhHHHHHHHH-h
Q 004021 275 FKIVLKTRSA-GVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGR-LPLALKTVGRA-M 349 (779)
Q Consensus 275 s~IivTTR~~-~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~~g~~-l 349 (779)
+|+|+...+. .+..... ...+.+...+++|-...+.+.+...+...+ .+++++|+++++| +--|+-++-.. +
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 7777654432 2222222 456789999999999999998877664444 7889999999988 44555443221 1
Q ss_pred cCC--------CChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcCC
Q 004021 350 KSQ--------KKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSLS 391 (779)
Q Consensus 350 ~~~--------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 391 (779)
.+. -..-+|+-+........-..... ..+..+-..=|+-|.
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~-~~L~~vR~~LYeLL~ 283 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARVILKEQSP-AKLLEVRGRLYELLS 283 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHh
Confidence 111 13458988877665543221111 244444444455554
No 252
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.022 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|-||=|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 253
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.85 E-value=0.15 Score=50.76 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=33.6
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCC------CEEEEEEe
Q 004021 168 WRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNF------DVVIWAAV 217 (779)
Q Consensus 168 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F------~~~~wv~v 217 (779)
-+.|.++=....++.|+|.+|+|||+||.+++... ...- ..++|++.
T Consensus 9 D~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 9 DELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEec
Confidence 33444433355799999999999999999987665 1222 56788887
No 254
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.80 E-value=0.043 Score=58.39 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=38.9
Q ss_pred ccccchhhhHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ------------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.++.++.+.-.+... +...+-|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999887776642 1124678999999999999999999876
No 255
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.79 E-value=0.018 Score=50.37 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccccCCCC
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNFCHQQHNFD 210 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~~~~~~~F~ 210 (779)
|-|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 5789999999999999999887 55664
No 256
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.78 E-value=0.043 Score=53.97 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 176 KNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
...+++.|+|.+|+|||++|.+++... ...-..++|++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEEC
Confidence 345799999999999999999988766 233567888887
No 257
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.78 E-value=0.027 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|.|+|++|+||||+|+.++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 258
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.78 E-value=0.032 Score=54.66 Aligned_cols=26 Identities=35% Similarity=0.615 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+..|.++||+|+||||..+.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45688999999999999999999877
No 259
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.75 E-value=0.3 Score=49.80 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=88.4
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-------chHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-------QTFQDDIG 225 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-------~~i~~~i~ 225 (779)
..++|-.++..++-.++... .++-.-|.|+|+.|.|||+|...+..+..+..++| +-|.. +-.+..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 45799999999999888753 23556788999999999999887776642334444 33333 22344444
Q ss_pred HHhCCCcch-hhhhcchhhHHHHHHHhhCCCc------ceeehhhcc---cc---------c----cccCCCcEEEEEeC
Q 004021 226 KRIGFSEDK-KWKEKSLQDKAVDISSILSPKK------FRIDLTELG---VP---------L----QMLNAGFKIVLKTR 282 (779)
Q Consensus 226 ~~l~~~~~~-~~~~~~~~~~~~~l~~~L~~kr------~~~~ld~l~---~~---------~----~~~~~gs~IivTTR 282 (779)
.++...... .....+..+....+...|+.+- +..++|++. .+ | ....+-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444221000 0122333444455555554321 233443331 11 1 12346677788999
Q ss_pred chh-------hhhhcCCc-eeEccCCChHHHHHHHHHHhh
Q 004021 283 SAG-------VCDQMDSK-NLEVYSLAHDEAWKLFQEMIE 314 (779)
Q Consensus 283 ~~~-------va~~~~~~-~~~l~~L~~~~a~~Lf~~~a~ 314 (779)
-.- |-.....+ ++-++.++-++...++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 632 22223333 445677788888888877663
No 260
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.74 E-value=0.021 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 261
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.73 E-value=1.5 Score=45.85 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=43.7
Q ss_pred CCcEEEEEeCc-hhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 273 AGFKIVLKTRS-AGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 273 ~gs~IivTTR~-~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
.++.+|++|.+ ..+..... ...+.+.+++.+++.+.+... + .+ ...+..++..++|.|+.+..+
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 46666666654 55554443 678899999999998887653 1 11 233678899999999876544
No 262
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.72 E-value=0.065 Score=46.80 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=36.2
Q ss_pred ccccchhhhHHHHHHHHhc----c-CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD----Q-QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|..-..+.+++.+.+ . ...+-|++.+|..|+|||.+|+.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4568877666666666653 2 3355699999999999999998888773
No 263
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.72 E-value=0.3 Score=46.76 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.|++|+|+.|+|||||.+.+..-.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 4699999999999999999986543
No 264
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.71 E-value=0.059 Score=53.69 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=35.7
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEec
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQ 218 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~ 218 (779)
|-+.|..+=....++.|+|.+|+|||++|.+++.... ..-..++|++..
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE 60 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC
Confidence 3344444433557999999999999999999987762 334678888873
No 265
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.70 E-value=0.29 Score=53.15 Aligned_cols=126 Identities=25% Similarity=0.266 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhc
Q 004021 160 QEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEK 239 (779)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~ 239 (779)
|..-..++.+.+... . .++.|.|+-++||||+++.+.... .+. .+++...++...- .
T Consensus 22 ~~~~~~~l~~~~~~~--~-~i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~--------------~ 78 (398)
T COG1373 22 RRKLLPRLIKKLDLR--P-FIILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDR--------------I 78 (398)
T ss_pred HHhhhHHHHhhcccC--C-cEEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcch--------------h
Confidence 334445555554444 2 299999999999999997776655 222 5555552211000 0
Q ss_pred chhhHHHHHHHhhCCCcceee---------hhhccccccccCCCcEEEEEeCchhh-----hhhc-C-CceeEccCCChH
Q 004021 240 SLQDKAVDISSILSPKKFRID---------LTELGVPLQMLNAGFKIVLKTRSAGV-----CDQM-D-SKNLEVYSLAHD 303 (779)
Q Consensus 240 ~~~~~~~~l~~~L~~kr~~~~---------ld~l~~~~~~~~~gs~IivTTR~~~v-----a~~~-~-~~~~~l~~L~~~ 303 (779)
...+....+...-..++..+. |+.....+.+.++. +|++|+-+..+ +... | ...+++.||+..
T Consensus 79 ~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 79 ELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred hHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 000111111111111333333 33333334444555 88988877554 3333 3 567899999998
Q ss_pred HHHHHH
Q 004021 304 EAWKLF 309 (779)
Q Consensus 304 ~a~~Lf 309 (779)
|-..+-
T Consensus 158 Efl~~~ 163 (398)
T COG1373 158 EFLKLK 163 (398)
T ss_pred HHHhhc
Confidence 887653
No 266
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.69 E-value=0.12 Score=61.79 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=39.9
Q ss_pred cccccchhhhHHHHHHHHhc-------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLPRVWRCITD-------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...++|.+..++.+.+.+.. +.....++.++|+.|+|||.||++++...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999998853 12234578999999999999999998766
No 267
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.68 E-value=0.97 Score=50.75 Aligned_cols=154 Identities=12% Similarity=0.157 Sum_probs=87.5
Q ss_pred ccccchhhhHHHHHHHHhc---cCCCceEEEEEcCCCCcHHHHHHHHHhhhcc--ccCCCCEEEEEEe--------chHH
Q 004021 155 QTIVGQEKLLPRVWRCITD---QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCH--QQHNFDVVIWAAV--------QTFQ 221 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~--~~~~F~~~~wv~v--------~~i~ 221 (779)
..+-+|+.+..+|.+.+.. +++..+.+-|.|.+|+|||..+..|.+.... .++.-....+|.+ .++.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 4567899999999998864 2344568999999999999999999885410 1222222223333 6677
Q ss_pred HHHHHHhCCCcchhhhhcchhhHHHHHHHhhC---CCcc--e---eehhhccc--------ccc-ccCCCcEEEEEeCc-
Q 004021 222 DDIGKRIGFSEDKKWKEKSLQDKAVDISSILS---PKKF--R---IDLTELGV--------PLQ-MLNAGFKIVLKTRS- 283 (779)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~--~---~~ld~l~~--------~~~-~~~~gs~IivTTR~- 283 (779)
..|...+... ........+.+..+.. .++- . ..+|.+.. .|. ...++||++|.+=.
T Consensus 476 ~~I~~~lsg~------~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 476 EKIWEALSGE------RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHhcccC------cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 8888877654 1122333444444443 2222 2 22333322 122 23578887776521
Q ss_pred ----------hhhhhhcCCceeEccCCChHHHHHHHHHHhh
Q 004021 284 ----------AGVCDQMDSKNLEVYSLAHDEAWKLFQEMIE 314 (779)
Q Consensus 284 ----------~~va~~~~~~~~~l~~L~~~~a~~Lf~~~a~ 314 (779)
..|+..+|...+...|-++.+-.++...+..
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc
Confidence 1223334444556666666665555555443
No 268
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.68 E-value=0.068 Score=54.57 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=35.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEech
Q 004021 176 KNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQT 219 (779)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~ 219 (779)
+..+++.|.|.+|+|||++|.++.... ......++||+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecC
Confidence 356899999999999999999998877 35588899999933
No 269
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.67 E-value=0.023 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 270
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.65 E-value=0.056 Score=57.59 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=39.5
Q ss_pred cccccchhhhHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ------------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+..++|.++.++.+..++... +....-|.++|++|+|||+||+.++...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999998888541 1124678999999999999999998876
No 271
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.63 E-value=0.12 Score=54.32 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=43.6
Q ss_pred hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCE-EEEEEe-------chHHHHHHHHhCC
Q 004021 163 LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDV-VIWAAV-------QTFQDDIGKRIGF 230 (779)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~-~~wv~v-------~~i~~~i~~~l~~ 230 (779)
...++++.+..-. ....+.|+|.+|+|||||++.+++... ..+-+. ++|+.+ .++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3445777776421 335679999999999999999998762 234454 356666 5566666665554
No 272
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.61 E-value=0.049 Score=51.22 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=34.8
Q ss_pred ccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 157 IVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+||.+..+.++.+.+..-.....-|-|+|-.|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888999888887643233556699999999999999998865
No 273
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.61 E-value=0.68 Score=55.57 Aligned_cols=48 Identities=29% Similarity=0.422 Sum_probs=38.8
Q ss_pred ccccchhhhHHHHHHHHhcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+.+.+... .....++.++|..|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999998888642 1223578899999999999999998765
No 274
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.56 E-value=0.037 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|+|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999876
No 275
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.028 Score=51.55 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 004021 180 IIGLYGIGGVGKTTLLKQVN 199 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~ 199 (779)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 276
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.53 E-value=0.078 Score=52.40 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=35.6
Q ss_pred hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 163 LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
...++++.+....++..+|+|.|.||+||+||.-++.... ..+ =..++-+.|
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~--g~~VaVlAV 65 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RER--GKRVAVLAV 65 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHT--T--EEEEEE
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhc--CCceEEEEE
Confidence 4566777776655577899999999999999999988877 322 223455555
No 277
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.52 E-value=0.056 Score=52.18 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=36.5
Q ss_pred chhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 159 GQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.+..+-...++.|.+ ..++.+.|.+|.|||.||.+.+-+. -..+.|+.++++.-
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRP 57 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEec
Confidence 445556667777773 3699999999999999999988665 34588888877754
No 278
>PRK13947 shikimate kinase; Provisional
Probab=94.49 E-value=0.032 Score=52.91 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 279
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.49 E-value=0.038 Score=52.70 Aligned_cols=23 Identities=39% Similarity=0.767 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 280
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.48 E-value=0.026 Score=55.77 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 281
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.47 E-value=0.027 Score=54.88 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997764
No 282
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.45 E-value=0.029 Score=48.39 Aligned_cols=22 Identities=41% Similarity=0.768 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|-|+|.+|+|||+||+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988776
No 283
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.44 E-value=0.12 Score=53.57 Aligned_cols=87 Identities=13% Similarity=0.204 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcchhh--hhcchhhHHHHHHHhhC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSEDKKW--KEKSLQDKAVDISSILS 253 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~~~~--~~~~~~~~~~~l~~~L~ 253 (779)
.-+++-|+|..|+||||||..+.... +..-..++|+.. ..+-...+..++.+.+.-. .+...++....+.+.++
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lir 128 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIR 128 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhh
Confidence 45799999999999999999988766 334567899999 5566677777776533211 23344555555555555
Q ss_pred CCcc-eeehhhccc
Q 004021 254 PKKF-RIDLTELGV 266 (779)
Q Consensus 254 ~kr~-~~~ld~l~~ 266 (779)
...+ .+++|.+..
T Consensus 129 sg~~~lVVvDSv~a 142 (322)
T PF00154_consen 129 SGAVDLVVVDSVAA 142 (322)
T ss_dssp TTSESEEEEE-CTT
T ss_pred cccccEEEEecCcc
Confidence 5444 555666543
No 284
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.21 Score=52.81 Aligned_cols=38 Identities=34% Similarity=0.417 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..++|+++|.+|+||||++..++... . ...+ .+..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~a 277 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITT 277 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEec
Confidence 45799999999999999999998776 2 2222 3445555
No 285
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.40 E-value=0.086 Score=52.20 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=33.7
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
|-+.|..+=....++.|.|.+|+||||+|.+++... ...-..++|++.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~ 55 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDT 55 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEEC
Confidence 444444333355799999999999999999998776 222345677765
No 286
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.39 E-value=0.035 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
No 287
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.39 E-value=0.03 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 288
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.34 E-value=0.048 Score=55.87 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.+|+|.|..|+||||+|+.+..-.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998876654
No 289
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.34 E-value=0.058 Score=54.02 Aligned_cols=39 Identities=26% Similarity=0.543 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 164 LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++..+....++..+|+|.|.||+||+||.-.+...+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 457777777766688999999999999999998888777
No 290
>PRK13949 shikimate kinase; Provisional
Probab=94.32 E-value=0.038 Score=52.14 Aligned_cols=23 Identities=43% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 291
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.31 E-value=0.037 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 292
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.30 E-value=0.098 Score=53.47 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..++|.++|.+|+||||++..++... . ..-..+.+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeC
Confidence 56899999999999999999998776 2 22235666665
No 293
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.28 E-value=0.11 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+..+|.|+|.+|+|||||+..+.+..
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999876
No 294
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.27 E-value=0.065 Score=61.16 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=53.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-----chHHHHHHHHhC
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-----QTFQDDIGKRIG 229 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-----~~i~~~i~~~l~ 229 (779)
..++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+... ..+++..+|..- ..+++.++..++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNPEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCCCcchHHHHHHHHHhcC
Confidence 56899999988888777655 4688999999999999999998762 345677888776 455555655544
Q ss_pred C
Q 004021 230 F 230 (779)
Q Consensus 230 ~ 230 (779)
.
T Consensus 105 ~ 105 (637)
T PRK13765 105 K 105 (637)
T ss_pred H
Confidence 3
No 295
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.71 Score=44.85 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=34.1
Q ss_pred cccc-hhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVG-QEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vG-r~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++| .+..+++|.+.+.-+ -..++=+.++|++|.|||-||++|+++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence 3455 577777777665321 1245667899999999999999999876
No 296
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.23 E-value=0.056 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|+|.|-||+||||+|..+....
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 68999999999999999966655
No 297
>PRK04328 hypothetical protein; Provisional
Probab=94.23 E-value=0.22 Score=50.33 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=34.1
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
|-+.|..+=..-.++.|.|.+|+|||+||.++.... -..-..++|++.
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ 59 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVAL 59 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEe
Confidence 334444432345799999999999999999876654 123456888988
No 298
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.22 E-value=0.034 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999997764
No 299
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.21 E-value=0.069 Score=48.48 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
++|.|+|..|+|||||++.+.+.. . +..+...+..+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEc
Confidence 489999999999999999999988 2 345555545544
No 300
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.19 E-value=0.18 Score=51.68 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=42.5
Q ss_pred cccccchhhhHH---HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCC
Q 004021 154 EQTIVGQEKLLP---RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNF 209 (779)
Q Consensus 154 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F 209 (779)
...+||..+..+ -+++.+..+.-.-+.|-|+|++|.|||+||..+.+.. -..-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 456899876554 4666777665567899999999999999999999988 444556
No 301
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.18 E-value=0.059 Score=51.27 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHH
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGK 226 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~ 226 (779)
..-+.++|..|+|||.||.++.+... ... ..+.|+++.+++..+-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~--~~g-~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI--RKG-YSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc--cCC-cceeEeecCceeccccc
Confidence 35699999999999999999998873 222 34677888777776643
No 302
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.17 E-value=0.1 Score=59.83 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=49.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-----chHHHHHHHHhC
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-----QTFQDDIGKRIG 229 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-----~~i~~~i~~~l~ 229 (779)
..++|.++.++.+...+... +-+.++|++|+||||+|+.+.+.. . ...|...+++.- ..++..++..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCCCCCchHHHHHHHHhhc
Confidence 56799999888887777655 245599999999999999999877 2 223333333333 456666666655
Q ss_pred C
Q 004021 230 F 230 (779)
Q Consensus 230 ~ 230 (779)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 3
No 303
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.039 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 304
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=1.4 Score=49.33 Aligned_cols=52 Identities=31% Similarity=0.328 Sum_probs=37.9
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCC
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNF 209 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F 209 (779)
.++=|.++-+.++.+.+.-+ -...+=|-.+|+||.|||++|+++++.. +-.|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe
Confidence 44455777776666554321 2356788899999999999999999987 5555
No 305
>PRK14530 adenylate kinase; Provisional
Probab=94.11 E-value=0.042 Score=54.27 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998776
No 306
>PRK08181 transposase; Validated
Probab=94.09 E-value=0.11 Score=52.82 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHH
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGK 226 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~ 226 (779)
.-+.++|.+|+|||.||.++.+... .....+.|+++.++...+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRTTDLVQKLQV 151 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeHHHHHHHHHH
Confidence 4589999999999999999998772 23345677777666666643
No 307
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.08 E-value=0.12 Score=52.47 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=40.8
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc----CCCCEEEEEEe-----chHHHHHHHHhCC
Q 004021 166 RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ----HNFDVVIWAAV-----QTFQDDIGKRIGF 230 (779)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~----~~F~~~~wv~v-----~~i~~~i~~~l~~ 230 (779)
.|-+.|.++=....++=|+|.+|+|||+||..++-.. ... +.=..++|++- .+-+.+|++..+.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~ 98 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL 98 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc
Confidence 3444554432244699999999999999998876443 111 12246899998 3344566665543
No 308
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.07 E-value=0.073 Score=51.06 Aligned_cols=37 Identities=35% Similarity=0.476 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.++|.|+|+.|+|||||+..+.... ...|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 567765555554
No 309
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.06 E-value=0.69 Score=46.38 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 310
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.03 E-value=0.081 Score=53.45 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIG 229 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~ 229 (779)
...=+.++|.+|+|||.||.++.++.. ..--.+.++++.++..++.....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHHHHHHHh
Confidence 446788999999999999999999982 33345778888888887776554
No 311
>PRK13948 shikimate kinase; Provisional
Probab=94.03 E-value=0.056 Score=51.46 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+.|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998876
No 312
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.01 E-value=0.051 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 313
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.01 E-value=0.12 Score=54.10 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHH
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGK 226 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~ 226 (779)
.-+.++|..|+|||.||.++++... ..-..++++++.+++..+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHHHHHHHHHH
Confidence 6799999999999999999999872 22236778888776666644
No 314
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.99 E-value=0.043 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.++|.+|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999876
No 315
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.98 E-value=0.05 Score=53.29 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=24.0
Q ss_pred ccCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 173 DQQKNRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 173 ~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
++....++|.|+|.+|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 33446789999999999999999998754
No 316
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.97 E-value=0.056 Score=50.64 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 56799999999999999999998876
No 317
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.95 E-value=0.069 Score=59.22 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=27.3
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 168 WRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 168 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++.+....+++.+|+|.|..|+||||||+.+....
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 33444344467899999999999999999998654
No 318
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.95 E-value=0.14 Score=53.23 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=46.4
Q ss_pred chhhhHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHh
Q 004021 159 GQEKLLPRVWRCITDQQ--KNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRI 228 (779)
Q Consensus 159 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l 228 (779)
+|....+...+++..-. ...+-+-++|..|+|||.||.++++... +.. ..+.++++..++..+....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g-~~v~~~~~~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKG-VSSTLLHFPEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEEEHHHHHHHHHHHH
Confidence 45555555566665321 1346788999999999999999999983 233 3467788877777776554
No 319
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.92 E-value=0.06 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|++|+||||||+.+....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998876
No 320
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=1.9 Score=45.52 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=35.2
Q ss_pred cccc-hhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVG-QEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++| .+..++.+.+.+..+. -....-++|..|+||||+|..+.+..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3567 6667777777776552 34577999999999999999987765
No 321
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.90 E-value=0.037 Score=29.77 Aligned_cols=16 Identities=44% Similarity=0.683 Sum_probs=7.2
Q ss_pred cCceeeecCCcccccc
Q 004021 537 SLHHLDLSLTHIRGLP 552 (779)
Q Consensus 537 ~L~~L~L~~~~i~~lp 552 (779)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 322
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.90 E-value=0.11 Score=58.58 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=37.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
.+++|.+..++.+...+... ...-|-|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999998877554 3455679999999999999999864
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.87 E-value=0.15 Score=51.29 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=38.2
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHH
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGK 226 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~ 226 (779)
|-+.|..+=....++.|.|.+|+|||++|.++.... -..-..++||+...-..++.+
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeCCHHHHHH
Confidence 334454443356799999999999999999876654 123467888888443334433
No 324
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.86 E-value=0.049 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998775
No 325
>PRK14974 cell division protein FtsY; Provisional
Probab=93.84 E-value=0.19 Score=52.83 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.++|++|+||||++..+++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998888766
No 326
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.84 E-value=0.049 Score=52.10 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999998864
No 327
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.84 E-value=0.052 Score=49.18 Aligned_cols=23 Identities=52% Similarity=0.784 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 328
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.82 E-value=0.14 Score=45.57 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=29.9
Q ss_pred hhcccccCceeeecCCcccccchh-hccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecc
Q 004021 531 RISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLE 593 (779)
Q Consensus 531 ~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 593 (779)
.|.+..+|+.+.+.. .++.++.. |.++++|+.+.+..+ +..++...+..+.+|+.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc
Confidence 355666777777664 35555443 666667777777654 5666666566666677776643
No 329
>PF13245 AAA_19: Part of AAA domain
Probab=93.80 E-value=0.19 Score=40.11 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccc-cCCCCEEEEEEe-chHHHHHHHHh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQ-QHNFDVVIWAAV-QTFQDDIGKRI 228 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~-~~~F~~~~wv~v-~~i~~~i~~~l 228 (779)
.+++.|.|.+|.|||+++.......... ...-+.++.++. ....+.|.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3678889999999995554444333121 122334555555 55555665555
No 330
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.79 E-value=0.0059 Score=63.31 Aligned_cols=211 Identities=22% Similarity=0.237 Sum_probs=109.0
Q ss_pred cccccccccc--ccchhhcccccCceeeecCC-cccc--cchhhccCccCcEeeccCCcCCCCCchh-hhcCCccCcEee
Q 004021 517 LSLRRNDSLT--ELPSRISSLVSLHHLDLSLT-HIRG--LPQELKALEKLRYLNLEYTHYLSIIPHQ-LISGFLKLEVLR 590 (779)
Q Consensus 517 L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~-~i~~--lp~~~~~L~~L~~L~l~~~~~l~~lp~~-~i~~L~~L~~L~ 590 (779)
|.|+|+..+. .+-..-.+.++++.|++.+| .++. +-.--..+.+|++|++..|..++...-. ....+++|.+|+
T Consensus 143 LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lN 222 (483)
T KOG4341|consen 143 LSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLN 222 (483)
T ss_pred ccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhh
Confidence 6666663332 22333456778888888877 3433 2222346788888888887655533221 234678888888
Q ss_pred eccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccc-------ccCCCCCccc------Cc----cc--
Q 004021 591 LLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAV-------QKFFKYPKLD------LT----WL-- 651 (779)
Q Consensus 591 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~-------~~~~~L~~L~------~~----~l-- 651 (779)
++.|.--. + ...-.-..+..+|+.+...++....+ ..+.-+.+++ +. |.
T Consensus 223 lSwc~qi~----------~--~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 223 LSWCPQIS----------G--NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred hccCchhh----------c--CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 88774221 0 11112233344455554443222111 0000011110 00 00
Q ss_pred ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC--CCCCCCccEEeeeCC
Q 004021 652 VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN--PLHFPKLKKIGVYGC 729 (779)
Q Consensus 652 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~l~~L~~L~l~~c 729 (779)
..+..|+.|..++|..+.+.+-. .-..+.++|+.|.++.|..+...... ..+.+.|+.+++..|
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~--------------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLW--------------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHH--------------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 23456677777776654433210 12245688999999988877665442 236788888888888
Q ss_pred CCCCCC--C-CCCCCcccccEEEechH
Q 004021 730 PKLKKL--P-INSSSAKERRVVIEGLK 753 (779)
Q Consensus 730 ~~L~~l--P-~~~~~~~~~~l~i~~~~ 753 (779)
.....- - .......++.+.++.|.
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhh
Confidence 654322 1 11122333666666443
No 331
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.79 E-value=0.096 Score=50.27 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=33.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..+..+.-...+. .=+.++|.+|+|||++|+.+..-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHHhC
Confidence 45789888888877666654 578899999999999999987544
No 332
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.059 Score=48.99 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=32.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCC
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFS 231 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~ 231 (779)
.+++.|+|.+|+||||+.+.+-... +.. -.|+...+.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~~-----~ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VKH-----KIVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hhc-----eeeeHhHHHHHHHHHhCCc
Confidence 5799999999999999998776543 111 1133366777777776665
No 333
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.79 E-value=0.28 Score=45.90 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.++-|+|..|.|||||.+.+|...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34689999999999999999999876
No 334
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.78 E-value=0.09 Score=54.52 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=42.4
Q ss_pred ccccchhhhHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..|+|.++.++++++.+... +..-+|+-++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999763 3466899999999999999999998877
No 335
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.78 E-value=0.28 Score=51.23 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=41.7
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc----CCCCEEEEEEe-----chHHHHHHHHhCCC
Q 004021 166 RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ----HNFDVVIWAAV-----QTFQDDIGKRIGFS 231 (779)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~----~~F~~~~wv~v-----~~i~~~i~~~l~~~ 231 (779)
.|-+.|..+=...+++-|+|.+|+|||+|+.+++-.. ... ..=..++||+. .+-+.++++.++.+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d 157 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVD 157 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 3444555443355799999999999999998876432 111 11247899998 23345567666654
No 336
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.75 E-value=0.99 Score=53.28 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
+.+++.|.|+.|.|||||.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999988755
No 337
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.74 E-value=0.27 Score=54.19 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=95.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCCEEEEEEe-chHHHHHHHHhCCCc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-HNFDVVIWAAV-QTFQDDIGKRIGFSE 232 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~~F~~~~wv~v-~~i~~~i~~~l~~~~ 232 (779)
++++|.+.-...|.+.+..+. -..-....|.-|+||||+|+-++...--.. ...+. |- -...+.|...-..+
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP----C~~C~~Ck~I~~g~~~D- 89 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP----CGKCISCKEINEGSLID- 89 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc----chhhhhhHhhhcCCccc-
Confidence 457999999999999998762 234566789999999999999887651111 11110 00 12223332220000
Q ss_pred chhhhhcchhhHHHHHHHhhCCCcc--------eeehhhc-----------cccccccCCCc-EEEEEeCchhhhhhcC-
Q 004021 233 DKKWKEKSLQDKAVDISSILSPKKF--------RIDLTEL-----------GVPLQMLNAGF-KIVLKTRSAGVCDQMD- 291 (779)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~L~~kr~--------~~~ld~l-----------~~~~~~~~~gs-~IivTTR~~~va~~~~- 291 (779)
--.++. .-...++.+++..+.-.| ...+|++ ...+..--..- -|+.||--..+....-
T Consensus 90 viEiDa-ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 90 VIEIDA-ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred chhhhh-hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhh
Confidence 000000 011234444444433222 2233332 11111111222 3555666666654433
Q ss_pred -CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCCh
Q 004021 292 -SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLP 339 (779)
Q Consensus 292 -~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP 339 (779)
...|.++.++.++-...+...+.......+ ++....|++..+|..
T Consensus 169 Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 169 RCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred ccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 688999999999999988888876654333 455667777777644
No 338
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.82 Score=50.41 Aligned_cols=139 Identities=21% Similarity=0.224 Sum_probs=74.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe--chHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCC
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV--QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPK 255 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v--~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k 255 (779)
..=|-+||++|.|||-||++|+|.. .-.| ++| .+++..-. ..+.....+..++.=...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGPELlNkYV------------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGPELLNKYV------------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCHHHHHHHh------------hhHHHHHHHHHHHhhcCC
Confidence 4557899999999999999999987 4555 555 33322211 111111111111111122
Q ss_pred cceeehhhcccc----------------------cc--ccCCCcEEEEEeCchhhhhh----cC--CceeEccCCChHHH
Q 004021 256 KFRIDLTELGVP----------------------LQ--MLNAGFKIVLKTRSAGVCDQ----MD--SKNLEVYSLAHDEA 305 (779)
Q Consensus 256 r~~~~ld~l~~~----------------------~~--~~~~gs~IivTTR~~~va~~----~~--~~~~~l~~L~~~~a 305 (779)
.+.+-+|++... +. ....|--||-.|...++... .| +...-++.-+.+|=
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 332222222111 00 11245556777776665322 13 56667788888888
Q ss_pred HHHHHHHhhc--cCCCCCCChHHHHHHHHHHhCCC
Q 004021 306 WKLFQEMIER--STLDSHTSIPELAETLARECGRL 338 (779)
Q Consensus 306 ~~Lf~~~a~~--~~~~~~~~l~~~~~~I~~~c~gl 338 (779)
..+++..... .....+-++.++++. .+|.|.
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 9999888763 333445566666543 345543
No 339
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.71 E-value=0.4 Score=44.93 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEE
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAA 216 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~ 216 (779)
-.+++|.|..|.|||||.+.++... ....+.+++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~ 60 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVD 60 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEEC
Confidence 4689999999999999999998765 2334555543
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.70 E-value=0.16 Score=50.93 Aligned_cols=57 Identities=18% Similarity=0.051 Sum_probs=38.0
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHH
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGK 226 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~ 226 (779)
+-+.|..+=....++.|+|.+|+|||+||.++..... ..=..++|++..+-..++++
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCCHHHHHH
Confidence 3344444433567999999999999999999866541 23357888888433344444
No 341
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.70 E-value=0.52 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
+.+++.|.|+.+.||||+.+.+.-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 457899999999999999988753
No 342
>PRK13975 thymidylate kinase; Provisional
Probab=93.69 E-value=0.059 Score=52.37 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.|.|+.|+||||+|+.++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999987
No 343
>PRK14527 adenylate kinase; Provisional
Probab=93.69 E-value=0.063 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|+|.+|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 344
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.69 E-value=0.11 Score=51.91 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhhcchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 004021 13 LFSRTLHRVGEQANYVWGLKKNLEGLKTEMRKLTRTRDDLVNKVEVEEQPRRTRRTNRVAGWLEDVQKLGTEFTELQQVR 92 (779)
Q Consensus 13 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~~Wl~~l~~~~~d~ed~ld~~ 92 (779)
+++.|-++.......+..++.+++-+++|++++|.||+.+ ++... ... ...+..+.++-..||++|.++|-+
T Consensus 301 lL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~-nkh-~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 301 LLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPH-NKH-DTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccc-hhh-hhhhhHHHHHHHHHhheeeeeehh
Confidence 6667777777777778889999999999999999999985 44432 122 348999999999999999999876
Q ss_pred H
Q 004021 93 A 93 (779)
Q Consensus 93 ~ 93 (779)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 3
No 345
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.68 E-value=0.061 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|..|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998875
No 346
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.66 E-value=0.092 Score=55.23 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=37.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+||.++.+..++-.+.++ ...-|.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45799999998887777765 44567799999999999999997544
No 347
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.63 E-value=0.32 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.++.++|.+|+||||.|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999998888775
No 348
>PRK06526 transposase; Provisional
Probab=93.63 E-value=0.052 Score=54.79 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHH
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIG 225 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~ 225 (779)
.-+.|+|.+|+|||+||.++.+... +..+ .+.|++..++...+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~--~~g~-~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC--QAGH-RVLFATAAQWVARLA 142 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH--HCCC-chhhhhHHHHHHHHH
Confidence 5689999999999999999988762 2223 345555555555554
No 349
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.62 E-value=0.17 Score=53.00 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 164 LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+.+.+....+...+|+|.|.+|+|||||+..+....
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666555434467899999999999999999988776
No 350
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.60 E-value=0.15 Score=48.40 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 351
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.59 E-value=0.29 Score=52.33 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=36.5
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEec
Q 004021 165 PRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQ 218 (779)
Q Consensus 165 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~ 218 (779)
.++-+.|..+=..-.++.|.|.+|+|||||+.+++.... ..-..++|++..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~E 119 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGE 119 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECC
Confidence 444455544433457999999999999999999988762 223567888873
No 352
>PRK13946 shikimate kinase; Provisional
Probab=93.59 E-value=0.065 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.|.++|++|+||||+|+.+++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 353
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.58 E-value=0.065 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...|.|+|+.|+||||+|+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999998875
No 354
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.57 E-value=0.083 Score=49.32 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
++.|+|.+|+||||+|..+.... ...-..++|++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEEC
Confidence 46899999999999999998876 223456777777
No 355
>PLN02200 adenylate kinase family protein
Probab=93.54 E-value=0.071 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|.|++|+||||+|+.++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 356
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.49 E-value=3.4 Score=44.12 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-------chHHHHHHHHhCCC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-------QTFQDDIGKRIGFS 231 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-------~~i~~~i~~~l~~~ 231 (779)
.+.||-.+|.-|.||||.|..+++.+ + .+=..+.-|+. -+-++.++++.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l-k--k~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL-K--KKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH-H--HcCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 46799999999999999999999888 2 22223444444 34466677777655
No 357
>PRK09183 transposase/IS protein; Provisional
Probab=93.48 E-value=0.12 Score=52.45 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
..+.|+|.+|+|||+||.++++... ... ..+.+++..++...+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G-~~v~~~~~~~l~~~l 145 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAG-IKVRFTTAADLLLQL 145 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcC-CeEEEEeHHHHHHHH
Confidence 5678999999999999999987752 122 234455655554444
No 358
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.48 E-value=0.11 Score=50.09 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEech
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQT 219 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~ 219 (779)
++.|.|.+|+|||+||.++..... ..=..++|++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC
Confidence 367899999999999999877652 2224577888733
No 359
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.46 E-value=0.11 Score=56.18 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=37.0
Q ss_pred cccccchhhhHHHHHHHHhcc--------------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ--------------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--------------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+..++|.+..++.+...+... .....-|.++|.+|+|||++|+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 356899999998886655221 0123568999999999999999998765
No 360
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.46 E-value=0.067 Score=47.00 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 361
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=1.2 Score=49.05 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=37.8
Q ss_pred ccccchhhhHHHHHHHHhc---c-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD---Q-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++=|.+..+.++.+.+.. . =...+=|-+||++|.|||.||+++++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 4567889888888887653 1 1234567899999999999999999987
No 362
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.45 E-value=0.06 Score=49.62 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 363
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.43 E-value=0.053 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 364
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.40 E-value=0.1 Score=50.83 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|.||||||+.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34689999999999999999998755
No 365
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.39 E-value=0.099 Score=54.87 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=36.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.++.++.+.-.+.+. +..-+-+.|.+|+||||+|+.+.+-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 56799999998887655433 33458899999999999999997654
No 366
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.35 E-value=0.062 Score=55.45 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.|+|+|-||+||||+|..++...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 478999999999999999998877
No 367
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.35 E-value=0.12 Score=57.52 Aligned_cols=58 Identities=24% Similarity=0.404 Sum_probs=44.6
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 155 QTIVGQEKLLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.+++--.+-++++..||... ....+++.+.|++|+||||.++.+++.. .|+.+-|.+-
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 34555567788999998763 3345799999999999999999999876 4677777654
No 368
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.83 Score=47.56 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=34.0
Q ss_pred cccchhhhHHHHHHHHhcc----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITDQ----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++.|.++.++-|.+...-+ ...-+-|..+|++|.|||-||++||..-
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 3566666666665554321 2345678899999999999999999876
No 369
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.32 E-value=0.067 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 370
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.32 E-value=4.5 Score=42.38 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=41.9
Q ss_pred CCcEEEEEeCc-hhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 273 AGFKIVLKTRS-AGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 273 ~gs~IivTTR~-~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
.++.+|++|.+ ..+....- ...+.+.+++.++..+.+....... ...+...++.++|.|+.+
T Consensus 136 ~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 45556666654 45554433 5788999999999998887654211 123567788999999644
No 371
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.32 E-value=0.11 Score=55.03 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=37.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|+++.+..+...+..+ +-+-+.|.+|+|||+||+.++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l 67 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARAL 67 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHh
Confidence 34799888888888887766 568899999999999999999887
No 372
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.31 E-value=0.068 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|.|-||+||||++..++...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 579999999999999999888877
No 373
>PRK06921 hypothetical protein; Provisional
Probab=93.30 E-value=0.17 Score=51.66 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
...-+.++|..|+|||.||.++++.. . +..-..+++++..+++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~-~~~g~~v~y~~~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-M-RKKGVPVLYFPFVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-h-hhcCceEEEEEHHHHHHHH
Confidence 35678999999999999999999987 2 2213456777765555544
No 374
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.27 E-value=0.091 Score=52.51 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=22.2
Q ss_pred EEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 183 LYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 183 I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
|+|++|+||||+++.+.+.. ...-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~---~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL---ESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH---TTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhccCCceEEEc
Confidence 68999999999999999887 233334555555
No 375
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.26 E-value=0.12 Score=52.62 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=26.3
Q ss_pred hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 163 LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-++++..++..+ .-|-+.|.+|+|||++|+.+++..
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555555444 456689999999999999998754
No 376
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.24 E-value=0.12 Score=58.57 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=36.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|..+.|.+-.+.|.++.........+|.|+|++|+||||+|+.++...
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 445667766666666655544455689999999999999999999887
No 377
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.22 E-value=0.099 Score=55.01 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=38.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.+||.++.+..|...+.++ .+.-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999988888776 55556699999999999999997665
No 378
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.20 E-value=0.24 Score=49.49 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
+-+.|..+=..-.++.|.|.+|+||||||.++..... ..-..++|++.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~ 56 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTT 56 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEc
Confidence 3334433323457999999999999999998776541 22357788887
No 379
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.56 Score=53.77 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=42.2
Q ss_pred EEEEeCchhhhhh----cC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHH
Q 004021 277 IVLKTRSAGVCDQ----MD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLAL 342 (779)
Q Consensus 277 IivTTR~~~va~~----~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 342 (779)
++-+|+..++... .| ++.+.++.-+.....++|.-++...... .+..++++ |+...-|.+=|.
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 4446776666432 23 6788888888889999999888765532 33455566 877777776443
No 380
>PRK05973 replicative DNA helicase; Provisional
Probab=93.16 E-value=0.24 Score=49.21 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEec
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQ 218 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~ 218 (779)
...++.|.|.+|+|||++|.++..... + .=..+++++.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~-~Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--K-SGRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--h-cCCeEEEEEEe
Confidence 447899999999999999999877652 2 23457788883
No 381
>PRK04182 cytidylate kinase; Provisional
Probab=93.15 E-value=0.078 Score=50.61 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCC
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGF 230 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~ 230 (779)
+|.|.|+.|+||||+|+.++... . + -+++..++...+.+..+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l-g----~---~~id~~~~~~~~~~~~g~ 44 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL-G----L---KHVSAGEIFRELAKERGM 44 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C----C---cEecHHHHHHHHHHHcCC
Confidence 68999999999999999998876 1 1 123334566666655443
No 382
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.15 E-value=0.084 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+-|.++||.|+||||+.+++++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 347899999999999999999887
No 383
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.15 E-value=0.35 Score=49.06 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=34.9
Q ss_pred HHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 169 RCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 169 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
+.|..+=+..+++=|+|..|+||||+|.+++-.. +..-..++|++.
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDt 96 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDT 96 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeC
Confidence 3344433456899999999999999999887665 444558899998
No 384
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.14 E-value=0.076 Score=49.86 Aligned_cols=22 Identities=55% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.|.|.+|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999877
No 385
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.13 E-value=0.073 Score=48.35 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=33.3
Q ss_pred cchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 158 VGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
||+...++++.+.+..-.....-|.|.|-.|+||+++|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577777788877776532244667899999999999999998876
No 386
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.12 E-value=0.051 Score=29.24 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=9.2
Q ss_pred CCccEEeeeCCCCCCCCC
Q 004021 719 PKLKKIGVYGCPKLKKLP 736 (779)
Q Consensus 719 ~~L~~L~l~~c~~L~~lP 736 (779)
++|+.|++++|. |++||
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777777776 66665
No 387
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.11 E-value=0.11 Score=54.07 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=29.1
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 165 PRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 165 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+++.+....+...+|+|.|.+|+|||||+..+....
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444434467899999999999999999988766
No 388
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.10 E-value=0.15 Score=53.12 Aligned_cols=49 Identities=27% Similarity=0.321 Sum_probs=35.3
Q ss_pred cccccchhhhHH---HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLP---RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+||..+..+ -+++.+..+.-.-+.|-+.|++|.|||+||..+++..
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 356899876554 4566666664456889999999999999999999988
No 389
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.08 E-value=0.07 Score=50.08 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=24.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhC
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIG 229 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~ 229 (779)
|+|.|..|+|||||++.+... .+ .|| .+..+.+.....
T Consensus 2 I~i~G~~stGKTTL~~~L~~~------g~---~~v--~E~ar~~~~~~~ 39 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR------GY---PVV--PEYAREIIEEGG 39 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH------T----EEE----TTHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHc------CC---eEE--eecHHHHHHHhc
Confidence 789999999999999999764 22 233 555556665544
No 390
>PRK04296 thymidine kinase; Provisional
Probab=93.07 E-value=0.2 Score=48.32 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe----chHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCC
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV----QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSP 254 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v----~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 254 (779)
.++.|+|..|.||||+|..++.+. . .+-..++.+.- ......++.+++.... ........+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~-~--~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~-~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY-E--ERGMKVLVFKPAIDDRYGEGKVVSRIGLSRE-AIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-H--HcCCeEEEEeccccccccCCcEecCCCCccc-ceEeCChHHHHHHHHh--hC
Confidence 577899999999999999988876 2 22223333311 1223345555553211 1111223344444444 33
Q ss_pred Ccc-eeehhhcccc--------ccc-cCCCcEEEEEeCchh
Q 004021 255 KKF-RIDLTELGVP--------LQM-LNAGFKIVLKTRSAG 285 (779)
Q Consensus 255 kr~-~~~ld~l~~~--------~~~-~~~gs~IivTTR~~~ 285 (779)
..+ .+.+|++.-. ... ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 344 4555554211 111 346788999988744
No 391
>PRK15453 phosphoribulokinase; Provisional
Probab=93.05 E-value=0.097 Score=52.76 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|.+|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998766
No 392
>PRK13695 putative NTPase; Provisional
Probab=93.01 E-value=0.12 Score=48.98 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 393
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.01 E-value=0.67 Score=49.73 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccc--CCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ--HNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~--~~F~~~~wv~v 217 (779)
..++|.++|..|+||||.+..++... ... .+-..+..++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~-~~~~~~~g~~V~lit~ 214 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY-GINSDDKSLNIKIITI 214 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhhhccCCCeEEEEec
Confidence 45799999999999999999988776 211 12235666766
No 394
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.00 E-value=2.6 Score=46.46 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=33.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe----chHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV----QTFQDDIGK 226 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v----~~i~~~i~~ 226 (779)
...++.|-|.+|+|||++|..++... .. .+-..++|++. .++...++.
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~-a~-~~g~~v~~fSlEm~~~~l~~Rl~~ 244 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENV-AL-REGKPVLFFSLEMSAEQLGERLLA 244 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHH-HH-hCCCcEEEEECCCCHHHHHHHHHH
Confidence 34688999999999999999998665 21 22345778887 445444443
No 395
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.00 E-value=0.33 Score=43.21 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=21.8
Q ss_pred hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 554 ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 554 ~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
.|.++++|+.+.+..+ +..++...+..+++|+.+.+..+
T Consensus 7 ~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST
T ss_pred HHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc
Confidence 3667778888887643 56777776777778888877653
No 396
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.99 E-value=0.11 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++++|+++|..|+|||||..++.+..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999998875
No 397
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.97 E-value=2.3 Score=51.06 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=38.6
Q ss_pred ccccchhhhHHHHHHHHhcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+.+.+... ......+.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 56899999999999888632 2223466789999999999999998865
No 398
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.95 E-value=0.093 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVN 199 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~ 199 (779)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999975
No 399
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.94 E-value=0.072 Score=54.01 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|.+.|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999877
No 400
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.93 E-value=0.094 Score=50.64 Aligned_cols=23 Identities=43% Similarity=0.463 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
..+|+|+|+.|+||||.|+.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 401
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.92 E-value=0.08 Score=55.12 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+++.+.|-|||||||+|.+.+-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 688999999999999998887666
No 402
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.92 E-value=0.13 Score=53.50 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.+++.+.|.|||||||+|.+.+-... .....++-|++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvSt 38 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVST 38 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEe
Confidence 47899999999999999999766552 22244777766
No 403
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.91 E-value=0.083 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 404
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.91 E-value=0.39 Score=50.57 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=41.2
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcc--c-cCCCCEEEEEEe-----chHHHHHHHHhCCC
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCH--Q-QHNFDVVIWAAV-----QTFQDDIGKRIGFS 231 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~--~-~~~F~~~~wv~v-----~~i~~~i~~~l~~~ 231 (779)
|-+.|..+=....++-|+|.+|+|||+|+..++-.... . ...-..++|++. .+-+.++++.++..
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d 187 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 33445444335578899999999999999887643201 0 111247899998 33445566666654
No 405
>PLN02348 phosphoribulokinase
Probab=92.90 E-value=0.2 Score=53.08 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 176 KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+...+|+|.|.+|+||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 366899999999999999999999877
No 406
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.89 E-value=0.16 Score=44.61 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...||.+.|-=|+||||+++.++...
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34899999999999999999998876
No 407
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.88 E-value=0.17 Score=54.62 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=37.5
Q ss_pred cccccchhhhHHHHHHHHhc----------cC--C----CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLPRVWRCITD----------QQ--K----NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~----------~~--~----~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+..++|.++.++.+...+.. .. . ....|.++|++|+|||++|+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 46789999999988776621 11 0 12578999999999999999998765
No 408
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.88 E-value=0.37 Score=50.86 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=42.4
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccc---c-CCCCEEEEEEe-----chHHHHHHHHhCCC
Q 004021 165 PRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ---Q-HNFDVVIWAAV-----QTFQDDIGKRIGFS 231 (779)
Q Consensus 165 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~---~-~~F~~~~wv~v-----~~i~~~i~~~l~~~ 231 (779)
..|-+.|..+=....++-|.|.+|+|||+||..++-.. .. . ..-..++|++. .+-+.+|++.++..
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~ 184 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLN 184 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCC
Confidence 33444455443356789999999999999998877443 11 1 11236899999 23355667766554
No 409
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.87 E-value=0.041 Score=31.91 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=16.8
Q ss_pred cCcEeeccCCcCCCCCchhhhcCC
Q 004021 560 KLRYLNLEYTHYLSIIPHQLISGF 583 (779)
Q Consensus 560 ~L~~L~l~~~~~l~~lp~~~i~~L 583 (779)
+|++|++++| .++.+|++ |++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT-
T ss_pred CccEEECCCC-cCEeCChh-hcCC
Confidence 5889999999 67788887 6553
No 410
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.85 E-value=0.1 Score=50.06 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998765
No 411
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.85 E-value=0.093 Score=49.60 Aligned_cols=43 Identities=23% Similarity=0.445 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCC
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGF 230 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~ 230 (779)
+|+|.|..|+||||+|+.+.+.. .|. +++...+...++...+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l-----g~~---~~~~~~~~~~~~~~~g~ 44 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-----SLK---LISAGDIFRELAAKMGL 44 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCc---eecHHHHHHHHHHHcCC
Confidence 79999999999999999998765 122 23334556666655443
No 412
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.85 E-value=1.8 Score=50.30 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=32.3
Q ss_pred cccchhhhHHHHHHHH---hcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCI---TDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++.|.+..++++.+.+ ... ..-.+-|.++|.+|.|||++|+.+++..
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 4567776665555443 221 0112348999999999999999998876
No 413
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.13 Score=55.37 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=37.1
Q ss_pred ccccchhh---hHHHHHHHHhccC-------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEK---LLPRVWRCITDQQ-------KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++-|-|+ ++++|+++|.++. .-++=|-++|++|.|||-||++|+...
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 34567764 5677888888752 234568899999999999999999876
No 414
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.82 E-value=0.094 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..|.|+|+.|+||||+|+.+++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358889999999999999999876
No 415
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.81 E-value=0.086 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|++|+|..|+|||||+.++....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 416
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.78 E-value=0.1 Score=53.81 Aligned_cols=40 Identities=35% Similarity=0.490 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..++|+|+|.+|+||||++..++... ..+..-..+..|+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEEC
Confidence 35799999999999999999998776 22211134556665
No 417
>PRK14532 adenylate kinase; Provisional
Probab=92.77 E-value=0.088 Score=50.77 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHH
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDD 223 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~ 223 (779)
|.|.|++|+||||+|+.++... . ..+++..++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~-----g---~~~is~~d~lr~ 37 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER-----G---MVQLSTGDMLRA 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----C---CeEEeCcHHHHH
Confidence 7789999999999999998765 1 345566555544
No 418
>PRK06761 hypothetical protein; Provisional
Probab=92.76 E-value=0.14 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|.|.|.+|+||||+|+.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999887
No 419
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.71 E-value=0.095 Score=43.88 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++.+.|.+|+||||++..++...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998887
No 420
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=1.3 Score=50.17 Aligned_cols=48 Identities=31% Similarity=0.387 Sum_probs=37.7
Q ss_pred ccccchhhhHHHHHHHHhcc----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++=|.++.+.+|.+-+.-+ -....=|-++|++|.|||-+|++|+...
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc
Confidence 56678899999998877531 1123467899999999999999999876
No 421
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.70 E-value=0.21 Score=45.53 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
-+.|+|-||+||+++.+.+|.-.- .+.+...+||+.
T Consensus 22 K~vivGng~VGKssmiqryCkgif--TkdykktIgvdf 57 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKGIF--TKDYKKTIGVDF 57 (246)
T ss_pred EEEEECCCccchHHHHHHHhcccc--ccccccccchhh
Confidence 467999999999999999997542 556778889887
No 422
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.70 E-value=4.2 Score=42.94 Aligned_cols=63 Identities=11% Similarity=0.005 Sum_probs=42.0
Q ss_pred CCcEEEEEeCc-hhhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 273 AGFKIVLKTRS-AGVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 273 ~gs~IivTTR~-~~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
.++-+|++|.+ ..+..... ...+.+.+++.+++.+.+.+..+. + .+.+..+++.++|.|..+.
T Consensus 137 ~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 137 ENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 45555555554 55655533 567899999999998887654211 1 3446788999999996543
No 423
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.15 Score=58.66 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=37.0
Q ss_pred cccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++||+++++++++.|.....+-+| ++|-+|||||++|.-++.+.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rI 215 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRI 215 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHH
Confidence 3699999999999999876434443 58999999999998887776
No 424
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.65 E-value=0.18 Score=56.48 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-++.-++|++|+||||||.-++++.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc
Confidence 45799999999999999999998865
No 425
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.65 E-value=0.093 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998765
No 426
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.67 Score=54.36 Aligned_cols=101 Identities=18% Similarity=0.302 Sum_probs=66.2
Q ss_pred ccccchhhhHHHHHHHHhcc----C--CCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----Q--KNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRI 228 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----~--~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l 228 (779)
..++|.++.+..|.+.+... . .......+.|+-|+|||-||++++... -+..+..+-++..+... +.+.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e-vskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE-VSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh-hhhcc
Confidence 56789999999999888653 1 145678899999999999999998876 34444444444455555 44444
Q ss_pred CCCcchhhhhcchhhHHHHHHHhhCCCccee-ehhhc
Q 004021 229 GFSEDKKWKEKSLQDKAVDISSILSPKKFRI-DLTEL 264 (779)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~-~ld~l 264 (779)
+.++ ..-..+....|.+.++.+.|.. -+|+|
T Consensus 638 gsp~-----gyvG~e~gg~LteavrrrP~sVVLfdeI 669 (898)
T KOG1051|consen 638 GSPP-----GYVGKEEGGQLTEAVKRRPYSVVLFEEI 669 (898)
T ss_pred CCCc-----ccccchhHHHHHHHHhcCCceEEEEech
Confidence 5541 1112233446888899999933 34444
No 427
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.64 E-value=0.094 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|+|-||+||||+|..++...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999988877
No 428
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=1.1 Score=50.41 Aligned_cols=53 Identities=28% Similarity=0.273 Sum_probs=36.4
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD 210 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~ 210 (779)
..+.|.+..++.+.+.+.- +-...+.+-++|++|.|||.||+++++.. ...|-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi 305 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFI 305 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEE
Confidence 3445666666555554421 12355689999999999999999999965 44553
No 429
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.61 E-value=0.098 Score=51.82 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.6
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGI-GGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~-gGvGKTtLA~~v~~~~ 202 (779)
++|+|+|. ||+||||++..++.-.
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL 26 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWAL 26 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHH
Confidence 58999996 9999999999998877
No 430
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.61 E-value=0.11 Score=54.10 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.++|++.|-|||||||.|..++.-.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHH
Confidence 67999999999999999998888776
No 431
>PRK13768 GTPase; Provisional
Probab=92.61 E-value=0.15 Score=51.73 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.|.||+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999998888766
No 432
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.61 E-value=0.0076 Score=57.49 Aligned_cols=76 Identities=24% Similarity=0.165 Sum_probs=44.2
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
||++.| .+..+-..|+.++.|..|+++.|.|..+|..++.+..++++++..| .++..|.+ +++++.+++++.-++.
T Consensus 47 ld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 47 LDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCcchhhhccCc
Confidence 555555 5555555555556666666666666666666666666666665555 45556655 5666666666555543
No 433
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.56 E-value=0.11 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|+|..|.||||+++.++...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999876
No 434
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.54 E-value=0.099 Score=53.84 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|+|-|||||||+|..++...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578889999999999999988776
No 435
>PTZ00494 tuzin-like protein; Provisional
Probab=92.53 E-value=3.4 Score=44.20 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=90.3
Q ss_pred cccccchhhhHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe---chHHHHHHHHhC
Q 004021 154 EQTIVGQEKLLPRVWRCITDQ-QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV---QTFQDDIGKRIG 229 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v---~~i~~~i~~~l~ 229 (779)
...+|.|+.+-..+.+.|..- ...++++.+.|.-|.||++|.+...... . -..++|.+ ++-++.+.+.++
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~EDtLrsVVKALg 443 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGTEDTLRSVVRALG 443 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCCcchHHHHHHHhC
Confidence 367899999888888888763 3478999999999999999999877655 2 23567777 889999999998
Q ss_pred CCcchhhhhcchhhHHHHH---HHhhCCCcceeeh--------hhc---cccccccCCCcEEEEEeCchhhhhhc---C-
Q 004021 230 FSEDKKWKEKSLQDKAVDI---SSILSPKKFRIDL--------TEL---GVPLQMLNAGFKIVLKTRSAGVCDQM---D- 291 (779)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l---~~~L~~kr~~~~l--------d~l---~~~~~~~~~gs~IivTTR~~~va~~~---~- 291 (779)
.+.-+ .-.+-++-..+.. .....++.-++++ ..+ ...+.....-|.|++---.+.+.-.. .
T Consensus 444 V~nve-~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPR 522 (664)
T PTZ00494 444 VSNVE-VCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRR 522 (664)
T ss_pred CCChh-hhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCcc
Confidence 87221 1111111111111 1112222222221 111 01122333456666544333332111 1
Q ss_pred CceeEccCCChHHHHHHHHHHh
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMI 313 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a 313 (779)
-..|.+++++..+|.+.-.+..
T Consensus 523 LDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 523 LDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ceeEecCCcCHHHHHHHHhccc
Confidence 3578899999999988766553
No 436
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.51 E-value=0.38 Score=50.78 Aligned_cols=38 Identities=37% Similarity=0.427 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..++++++|..|+||||++..++... ..+ -..+.+|+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeC
Confidence 46799999999999999999998766 222 235667777
No 437
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.49 E-value=4.1 Score=45.11 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe----chHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV----QTFQDDIGK 226 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v----~~i~~~i~~ 226 (779)
...++.|-|.+|+|||++|..++.+... ... ..++|++. .++...++.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~-~~g-~~vl~~SlEm~~~~i~~R~~~ 245 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAI-KEG-KPVAFFSLEMSAEQLAMRMLS 245 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHH-hCC-CeEEEEeCcCCHHHHHHHHHH
Confidence 3468999999999999999998876521 222 36788888 444444443
No 438
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.43 E-value=0.19 Score=52.53 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 439
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.38 E-value=0.1 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|.|-||+||||+|..++...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 578888999999999999998877
No 440
>PRK14531 adenylate kinase; Provisional
Probab=92.37 E-value=0.12 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..|.|.|++|+||||+|+.++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
No 441
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.36 E-value=0.21 Score=50.79 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..+++.|.|.+|+|||++|.+++.... ..=..+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEe
Confidence 457999999999999999999866541 22346777877
No 442
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.35 E-value=0.11 Score=49.07 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999998876
No 443
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.35 E-value=0.15 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|+|.+|+|||||+..+....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999887
No 444
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.33 E-value=0.5 Score=52.11 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 164 LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
+.++-+.|..+=..-.++.|.|.+|+|||||+.+++.... ..-..++|++..+-..++
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEESASQI 123 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccccHHHH
Confidence 3455555554433457999999999999999999988762 223467888884433444
No 445
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.30 E-value=0.25 Score=48.27 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|+|+|.+|+|||||...+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 45789999999999999999988754
No 446
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=3.9 Score=40.18 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=40.5
Q ss_pred cccccc--ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 149 IELPLE--QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 149 ~~~~~~--~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++.|++ +++-|.+..++++++.+.-+ -..++=|..+|++|.|||-+|++.+...
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 444443 45778999999999987421 1235567899999999999999987765
No 447
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.27 E-value=0.12 Score=50.21 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|+.|+||||+++.+++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 448
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.26 E-value=0.13 Score=47.92 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++.|.|+.|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999998764
No 449
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.25 E-value=0.5 Score=54.94 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=61.0
Q ss_pred HHHHHHh-ccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcchh--hhhcch
Q 004021 166 RVWRCIT-DQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSEDKK--WKEKSL 241 (779)
Q Consensus 166 ~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~~~--~~~~~~ 241 (779)
.|-..|. .+=...+++-|.|.+|+||||||.+++... ...=..++|+.. ..+-...++.++.+.+.- ....+.
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~ 123 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCH
Confidence 4444454 332356799999999999999998876554 122356789988 334446778887652211 122334
Q ss_pred hhHHHHHHHhhCCCcc-eeehhhcccc
Q 004021 242 QDKAVDISSILSPKKF-RIDLTELGVP 267 (779)
Q Consensus 242 ~~~~~~l~~~L~~kr~-~~~ld~l~~~ 267 (779)
++....+...++...+ ++++|.+...
T Consensus 124 E~~l~~i~~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 124 EQALEIADMLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHHHHHHHHHhhcCCCeEEEEcchhhh
Confidence 5555556666666555 5667766433
No 450
>PRK10646 ADP-binding protein; Provisional
Probab=92.24 E-value=0.26 Score=45.04 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 161 EKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 161 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+++.+++-+.|...-....+|.+.|-=|+||||+++.+++..
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345555555554432233689999999999999999998876
No 451
>PRK08840 replicative DNA helicase; Provisional
Probab=92.21 E-value=5.8 Score=44.01 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe----chHHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV----QTFQDDIGKR 227 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v----~~i~~~i~~~ 227 (779)
...++.|-|.+|+|||++|..++... ..+ +-..+++++. .++...++..
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~-a~~-~~~~v~~fSlEMs~~ql~~Rlla~ 268 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENA-AMD-QDKPVLIFSLEMPAEQLMMRMLAS 268 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHH-HHh-CCCeEEEEeccCCHHHHHHHHHHh
Confidence 34688899999999999998888765 222 2235667777 4455555444
No 452
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.18 E-value=0.12 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+.|+|+|..|+||||||+++++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998875
No 453
>PRK12338 hypothetical protein; Provisional
Probab=92.18 E-value=0.14 Score=52.96 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.+|.|.|.+|+||||+|+.++...
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence 35799999999999999999998876
No 454
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.17 E-value=0.11 Score=49.68 Aligned_cols=21 Identities=48% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~ 200 (779)
+|+|.|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999866
No 455
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.17 E-value=0.24 Score=49.35 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
...++.|.|.+|+||||||.+++.... +.. ..+++++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~ 60 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVST 60 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeC
Confidence 446999999999999999876655441 122 34566666
No 456
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.17 E-value=0.51 Score=49.40 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccc---cC-CCCEEEEEEech-----HHHHHHHHhCC
Q 004021 165 PRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ---QH-NFDVVIWAAVQT-----FQDDIGKRIGF 230 (779)
Q Consensus 165 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~---~~-~F~~~~wv~v~~-----i~~~i~~~l~~ 230 (779)
..+-+.|..+=....++.|+|.+|+|||||+..++... .. .. .-..++|++... -+..+++.++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~ 156 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGL 156 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 34444455443356899999999999999999887532 11 11 123578988822 23445555544
No 457
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.14 E-value=0.3 Score=53.34 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.+++.++|++|+||||++..++... .....-..+..|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEEC
Confidence 3699999999999999999887766 20122345666776
No 458
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=92.12 E-value=0.22 Score=50.30 Aligned_cols=38 Identities=39% Similarity=0.655 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD-VVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~-~~~wv~v 217 (779)
.-+.++|.|..|+||||||+.+++.. +.+|+ .++++-+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~i 106 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGV 106 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEe
Confidence 34678999999999999999999987 34454 4444443
No 459
>PRK08506 replicative DNA helicase; Provisional
Probab=92.12 E-value=6.3 Score=43.94 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe----chHHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV----QTFQDDIGKR 227 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v----~~i~~~i~~~ 227 (779)
.-.++.|-|.+|+|||++|..++.... +.. ..+++++. .++...++..
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~--~~g-~~V~~fSlEMs~~ql~~Rlla~ 242 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKAL--NQD-KGVAFFSLEMPAEQLMLRMLSA 242 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHH--hcC-CcEEEEeCcCCHHHHHHHHHHH
Confidence 346899999999999999999987762 222 35677787 4455555443
No 460
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.11 E-value=0.17 Score=46.63 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|-+.|.+|.||||+|.+++...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 461
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.11 E-value=0.33 Score=50.34 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=32.0
Q ss_pred cccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++=..+....+..++..+ +-|.|.|.+|+||||+|+.++...
T Consensus 46 ~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHH
Confidence 3333444555677777544 468999999999999999999876
No 462
>PRK01184 hypothetical protein; Provisional
Probab=92.10 E-value=0.13 Score=49.48 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
.+|+|+|++|+||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999987 444
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.10 E-value=0.2 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.|+|..|+||||++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887766
No 464
>PLN02165 adenylate isopentenyltransferase
Probab=92.09 E-value=0.14 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|+.|+||||||..++...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 45699999999999999999998875
No 465
>PRK14528 adenylate kinase; Provisional
Probab=92.05 E-value=0.14 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.|.|.|++|+||||+|+.++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 466
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.05 E-value=0.14 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|++|+|..|+|||||...+....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4799999999999999999998877
No 467
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.05 E-value=0.74 Score=42.54 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-ch----HHHHHHHHhC--------CC-----cchhhhhcc
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QT----FQDDIGKRIG--------FS-----EDKKWKEKS 240 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~----i~~~i~~~l~--------~~-----~~~~~~~~~ 240 (779)
.+|-|++..|.||||+|...+-+.. ...+ .+.++.. +. =-..+++.+. .. .+.......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH
Confidence 4788899899999999988877662 2222 3444444 10 1122333331 00 000000011
Q ss_pred hhhHHHHHHHhhCCCcc-eeehhhcccc--------------ccccCCCcEEEEEeCch
Q 004021 241 LQDKAVDISSILSPKKF-RIDLTELGVP--------------LQMLNAGFKIVLKTRSA 284 (779)
Q Consensus 241 ~~~~~~~l~~~L~~kr~-~~~ld~l~~~--------------~~~~~~gs~IivTTR~~ 284 (779)
..+.....++.+....| ++++|++..+ +.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233445556666666 6677776443 22334677999999984
No 468
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.04 E-value=0.11 Score=46.96 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3689999999999999999998766
No 469
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.98 E-value=0.12 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|.|-||+||||+|..++...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 578999999999999999888776
No 470
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.98 E-value=0.24 Score=58.00 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=39.0
Q ss_pred ccccchhhhHHHHHHHHhcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.++.++.|.+.+... ......+-++|+.|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999988631 2234578999999999999999998876
No 471
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.96 E-value=0.26 Score=45.46 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 161 EKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 161 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.+++|.+.|.+ +++.++|..|+|||||...+....
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456677776643 689999999999999999988764
No 472
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.88 Score=47.96 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=58.0
Q ss_pred hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH---HHHhCCCcchhhhhc
Q 004021 163 LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI---GKRIGFSEDKKWKEK 239 (779)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i---~~~l~~~~~~~~~~~ 239 (779)
...++-+.|..+=-.-.+|.|-|-+|+|||||..+++.+.. ..- .+.+|+-++-..+| ++.++.+. ....-
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~QiklRA~RL~~~~-~~l~l- 151 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQQIKLRADRLGLPT-NNLYL- 151 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHHHHHHHHHHhCCCc-cceEE-
Confidence 34556666655433447999999999999999999999882 222 78888884443333 45566441 11111
Q ss_pred chhhHHHHHHHhhCCCcc-eeehhhcccc
Q 004021 240 SLQDKAVDISSILSPKKF-RIDLTELGVP 267 (779)
Q Consensus 240 ~~~~~~~~l~~~L~~kr~-~~~ld~l~~~ 267 (779)
-.+...+.+.+.+..++. +.+.|.+...
T Consensus 152 ~aEt~~e~I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 152 LAETNLEDIIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred ehhcCHHHHHHHHHhcCCCEEEEecccee
Confidence 112223334444444444 6666766443
No 473
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.94 E-value=0.11 Score=51.33 Aligned_cols=24 Identities=46% Similarity=0.529 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-|.|+|.+|+|||||+..+.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568999999999999999998765
No 474
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.94 E-value=0.21 Score=49.82 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHH
Q 004021 169 RCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKR 227 (779)
Q Consensus 169 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~ 227 (779)
+.|..+=....++.|.|.+|+|||+||.++.....+ ..=+.++||+..+-.+++.+.
T Consensus 10 ~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 10 ELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp HHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS-HHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCCHHHHHHH
Confidence 334333234579999999999999999987654411 113467888884433444443
No 475
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=91.94 E-value=0.13 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 476
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.93 E-value=0.57 Score=49.59 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
.++|+++|+.||||||-...++.++ .....=..+..++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITt 241 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITT 241 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEe
Confidence 6899999999999987655555554 11233345677777
No 477
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.91 E-value=0.14 Score=46.09 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.|.++|..|+|||||++++-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999997755
No 478
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.90 E-value=0.13 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|.|-|||||||+|..++...
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 688999999999999999888776
No 479
>PRK08356 hypothetical protein; Provisional
Probab=91.88 E-value=0.16 Score=49.34 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVN 199 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~ 199 (779)
..+|+|.|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999983
No 480
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.23 Score=48.77 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 481
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.84 E-value=0.12 Score=47.76 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=25.9
Q ss_pred EEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHH
Q 004021 183 LYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIG 225 (779)
Q Consensus 183 I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~ 225 (779)
|+|++|+||||+|+.++.+. .| ..+++.++++..+
T Consensus 1 i~G~PgsGK~t~~~~la~~~-----~~---~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-----GL---VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-----TS---EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc-----Cc---ceechHHHHHHHH
Confidence 78999999999999999876 22 3456655555443
No 482
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.84 E-value=0.4 Score=47.64 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHH
Q 004021 168 WRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIG 225 (779)
Q Consensus 168 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~ 225 (779)
-+.|..+=....++.|.|.+|+|||++|.+++.... ..=..++|++...-..++.
T Consensus 6 D~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~---~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 6 DEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGL---KNGEKAMYISLEEREERIL 60 (224)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCHHHHH
Confidence 334433323457999999999999999998876641 2235677888733333333
No 483
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.84 E-value=0.52 Score=49.64 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=34.6
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCC----CCEEEEEEe
Q 004021 166 RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHN----FDVVIWAAV 217 (779)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~----F~~~~wv~v 217 (779)
.+.+.|..+=....++-|+|.+|+|||++|.+++... ..... =..++||+.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeC
Confidence 3334444433356799999999999999999988654 11111 147889988
No 484
>PRK02496 adk adenylate kinase; Provisional
Probab=91.81 E-value=0.14 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 485
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.81 E-value=0.14 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.381 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.+.|.+|+||||+|+.+..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999997765
No 486
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.80 E-value=0.17 Score=47.04 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 487
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.80 E-value=0.14 Score=44.72 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~ 201 (779)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 488
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.79 E-value=0.15 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 489
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.78 E-value=0.14 Score=47.87 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999987654
No 490
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.78 E-value=0.24 Score=49.00 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|.|||||++.++.-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998765
No 491
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.76 E-value=0.4 Score=51.88 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..+|+++|..|+||||++..++... ......+.+..++.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~ 229 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTT 229 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEec
Confidence 4799999999999999999887654 11222344555555
No 492
>PHA02244 ATPase-like protein
Probab=91.74 E-value=0.2 Score=52.59 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=29.9
Q ss_pred ccccchhhhH----HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLL----PRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~----~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|..... ..+..++..+ .-|-|+|.+|+|||+||+++++..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHh
Confidence 3456654433 3444444433 346789999999999999999876
No 493
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=91.74 E-value=0.19 Score=48.19 Aligned_cols=25 Identities=44% Similarity=0.539 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.|.|+|+.|+|||||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998765
No 494
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.74 E-value=0.23 Score=45.67 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998776
No 495
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.71 E-value=0.25 Score=47.70 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|.|||||++.+....
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998765
No 496
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.70 E-value=0.16 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..|+|.|..|+||||+|+.+++..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 497
>PLN02796 D-glycerate 3-kinase
Probab=91.69 E-value=0.17 Score=52.80 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+-+|+|.|..|+||||||+.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999999877
No 498
>PRK05748 replicative DNA helicase; Provisional
Probab=91.67 E-value=5.7 Score=44.08 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe----chHHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV----QTFQDDIGKR 227 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v----~~i~~~i~~~ 227 (779)
.-.++.|-|.+|+|||++|..+..+. ..+.. ..+++++. .++...++..
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~-a~~~g-~~v~~fSlEms~~~l~~R~l~~ 254 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNV-ATKTD-KNVAIFSLEMGAESLVMRMLCA 254 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHH-HHhCC-CeEEEEeCCCCHHHHHHHHHHH
Confidence 44689999999999999999998765 21212 35677887 4455555433
No 499
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.67 E-value=0.25 Score=50.92 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=38.9
Q ss_pred cchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEE
Q 004021 158 VGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVI 213 (779)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~ 213 (779)
-+|..+..--+++|.++ ++..|.+.|.+|.|||.||.+..=..--.++.|..++
T Consensus 227 ~prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 227 RPRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred CcccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 34666666677888888 8999999999999999999765432213355665443
No 500
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=91.67 E-value=0.15 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|+|-||+||||+|..++...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~L 24 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMM 24 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998877
Done!