Query 004021
Match_columns 779
No_of_seqs 574 out of 4181
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.5E-44 2.6E-48 403.4 19.1 299 155-469 128-470 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.3E-37 1.5E-41 385.7 26.5 305 154-470 123-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.6E-36 5.5E-41 345.7 18.3 279 155-463 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.6E-34 2.2E-38 327.2 25.6 301 154-467 123-449 (591)
5 4fcg_A Uncharacterized protein 99.9 3E-21 1E-25 204.0 16.5 222 495-761 81-318 (328)
6 4fcg_A Uncharacterized protein 99.8 1.7E-19 5.7E-24 190.5 13.3 201 516-752 85-287 (328)
7 3o6n_A APL1; leucine-rich repe 99.7 9.8E-18 3.3E-22 182.0 15.9 252 492-752 66-349 (390)
8 3oja_B Anopheles plasmodium-re 99.7 1E-17 3.5E-22 192.2 15.6 263 481-752 59-355 (597)
9 1xku_A Decorin; proteoglycan, 99.7 1.5E-16 5E-21 168.5 20.0 225 495-753 52-304 (330)
10 2o6q_A Variable lymphocyte rec 99.7 1E-16 3.4E-21 164.5 17.0 193 496-730 17-216 (270)
11 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-17 3.6E-22 175.6 9.7 223 496-752 51-301 (313)
12 1p9a_G Platelet glycoprotein I 99.7 7.6E-17 2.6E-21 166.9 15.7 196 491-730 6-206 (290)
13 1xku_A Decorin; proteoglycan, 99.7 1.8E-16 6.1E-21 167.8 17.3 221 495-752 31-273 (330)
14 2ft3_A Biglycan; proteoglycan, 99.7 1.8E-16 6.3E-21 167.9 17.2 224 495-753 54-305 (332)
15 3zyi_A Leucine-rich repeat-con 99.7 1.8E-16 6.2E-21 175.5 17.5 214 495-752 75-300 (452)
16 4fmz_A Internalin; leucine ric 99.7 2E-16 6.9E-21 168.8 17.2 115 479-598 50-169 (347)
17 4fmz_A Internalin; leucine ric 99.7 1.2E-16 4.2E-21 170.4 15.1 247 481-752 74-343 (347)
18 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-16 5.8E-21 164.3 15.2 197 498-736 14-217 (285)
19 3zyi_A Leucine-rich repeat-con 99.7 2.4E-16 8.2E-21 174.5 17.4 197 491-730 95-301 (452)
20 2z66_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 167.6 13.9 228 482-751 16-257 (306)
21 1ogq_A PGIP-2, polygalacturona 99.7 3E-17 1E-21 172.1 9.1 215 490-738 71-310 (313)
22 3zyj_A Leucine-rich repeat-con 99.7 3.1E-16 1.1E-20 172.9 17.5 213 495-751 64-288 (440)
23 3zyj_A Leucine-rich repeat-con 99.7 4.1E-16 1.4E-20 172.0 17.9 212 497-752 45-265 (440)
24 1ozn_A Reticulon 4 receptor; N 99.7 3.4E-16 1.2E-20 162.0 16.0 206 483-731 21-237 (285)
25 2id5_A Lingo-1, leucine rich r 99.7 4.8E-16 1.6E-20 173.6 18.4 237 481-752 19-282 (477)
26 2z66_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 166.7 13.0 210 481-730 36-259 (306)
27 2id5_A Lingo-1, leucine rich r 99.7 3.8E-16 1.3E-20 174.3 16.4 223 497-752 13-258 (477)
28 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.8E-21 171.1 11.2 242 481-752 39-311 (353)
29 3rgz_A Protein brassinosteroid 99.7 1.5E-16 5E-21 188.1 12.8 102 517-634 447-550 (768)
30 3o6n_A APL1; leucine-rich repe 99.7 4.5E-16 1.5E-20 168.9 15.5 241 493-752 43-328 (390)
31 4eco_A Uncharacterized protein 99.7 4.4E-16 1.5E-20 179.7 16.0 237 481-752 313-597 (636)
32 4ecn_A Leucine-rich repeat pro 99.7 1.1E-15 3.7E-20 179.7 17.6 235 496-753 549-838 (876)
33 2z80_A TOLL-like receptor 2, v 99.7 2.2E-16 7.5E-21 168.8 10.7 213 491-731 72-313 (353)
34 3oja_B Anopheles plasmodium-re 99.6 1.2E-15 4.1E-20 175.0 17.3 225 481-730 83-356 (597)
35 3vq2_A TLR4, TOLL-like recepto 99.6 4.9E-16 1.7E-20 179.1 14.1 234 484-751 296-554 (606)
36 2o6q_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 155.4 16.1 192 516-752 20-215 (270)
37 3rfs_A Internalin B, repeat mo 99.6 4.5E-16 1.5E-20 159.7 11.7 104 491-597 37-146 (272)
38 2ft3_A Biglycan; proteoglycan, 99.6 8E-16 2.7E-20 162.9 13.9 219 496-752 34-274 (332)
39 3rgz_A Protein brassinosteroid 99.6 1E-15 3.4E-20 180.9 15.4 79 517-597 399-479 (768)
40 4ecn_A Leucine-rich repeat pro 99.6 1E-15 3.5E-20 179.9 15.2 59 693-752 751-816 (876)
41 2xwt_C Thyrotropin receptor; s 99.6 1E-15 3.4E-20 153.9 13.0 193 516-752 35-236 (239)
42 1h6u_A Internalin H; cell adhe 99.6 1.2E-15 4.1E-20 159.4 14.0 194 491-738 37-235 (308)
43 1o6v_A Internalin A; bacterial 99.6 2.5E-15 8.5E-20 167.0 17.0 253 483-752 56-341 (466)
44 3v47_A TOLL-like receptor 5B a 99.6 2.1E-15 7E-20 167.4 16.3 61 689-751 341-404 (455)
45 2z62_A TOLL-like receptor 4, v 99.6 1.7E-15 5.8E-20 155.9 14.4 194 495-730 28-235 (276)
46 4eco_A Uncharacterized protein 99.6 6.7E-16 2.3E-20 178.1 12.3 240 491-752 269-576 (636)
47 1o6v_A Internalin A; bacterial 99.6 3.6E-15 1.2E-19 165.7 17.7 256 483-752 78-385 (466)
48 3v47_A TOLL-like receptor 5B a 99.6 2E-15 6.9E-20 167.4 15.0 80 517-598 84-168 (455)
49 4g8a_A TOLL-like receptor 4; l 99.6 2.4E-15 8.1E-20 174.3 16.2 60 689-750 512-575 (635)
50 2xwt_C Thyrotropin receptor; s 99.6 2.2E-15 7.5E-20 151.4 13.1 200 485-732 23-239 (239)
51 3t6q_A CD180 antigen; protein- 99.6 2.5E-15 8.7E-20 173.1 15.2 220 496-730 255-511 (606)
52 2z62_A TOLL-like receptor 4, v 99.6 4.1E-15 1.4E-19 153.0 14.9 208 500-750 12-232 (276)
53 3g06_A SSPH2 (leucine-rich rep 99.6 1.1E-14 3.6E-19 165.7 19.5 236 477-752 44-294 (622)
54 3j0a_A TOLL-like receptor 5; m 99.6 1.6E-14 5.4E-19 172.5 21.9 117 480-598 11-137 (844)
55 3rfs_A Internalin B, repeat mo 99.6 6.2E-15 2.1E-19 151.2 15.8 176 517-736 46-222 (272)
56 1p9a_G Platelet glycoprotein I 99.6 4.9E-15 1.7E-19 153.2 14.6 187 517-751 15-204 (290)
57 1wwl_A Monocyte differentiatio 99.6 9.4E-16 3.2E-20 160.7 9.0 195 517-750 100-304 (312)
58 3oja_A Leucine-rich immune mol 99.6 1.4E-15 4.7E-20 169.4 10.3 205 494-751 33-246 (487)
59 3vq2_A TLR4, TOLL-like recepto 99.6 5.1E-15 1.8E-19 170.5 14.8 220 481-734 315-560 (606)
60 2z81_A CD282 antigen, TOLL-lik 99.6 2.4E-15 8.1E-20 171.2 11.5 106 492-598 47-162 (549)
61 2z7x_B TOLL-like receptor 1, v 99.6 9.9E-15 3.4E-19 164.8 16.3 112 481-598 8-129 (520)
62 1h6u_A Internalin H; cell adhe 99.6 9.9E-15 3.4E-19 152.5 15.0 183 516-752 45-227 (308)
63 2z7x_B TOLL-like receptor 1, v 99.6 5.5E-15 1.9E-19 166.9 13.8 96 498-598 3-104 (520)
64 3m19_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 147.0 14.8 100 496-597 15-120 (251)
65 1ziw_A TOLL-like receptor 3; i 99.6 1.3E-14 4.5E-19 169.5 16.8 115 481-598 12-135 (680)
66 3bz5_A Internalin-J, INLJ; leu 99.6 1E-14 3.5E-19 160.9 14.9 101 485-594 54-158 (457)
67 3qfl_A MLA10; coiled-coil, (CC 99.6 6.9E-15 2.4E-19 127.0 10.6 84 8-98 1-84 (115)
68 3t6q_A CD180 antigen; protein- 99.6 7.7E-15 2.6E-19 169.1 14.3 239 492-751 275-556 (606)
69 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.8E-14 6.1E-19 164.2 16.5 137 477-634 35-181 (562)
70 3o53_A Protein LRIM1, AGAP0063 99.6 2.8E-15 9.5E-20 157.5 8.8 203 495-750 34-245 (317)
71 3m19_A Variable lymphocyte rec 99.6 1.8E-14 6.3E-19 145.8 14.3 171 516-730 18-190 (251)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.2E-14 1.1E-18 162.1 17.6 108 482-596 61-181 (562)
73 3bz5_A Internalin-J, INLJ; leu 99.6 3E-14 1E-18 157.1 16.8 101 490-599 37-142 (457)
74 1wwl_A Monocyte differentiatio 99.6 1.1E-14 3.8E-19 152.6 12.0 195 493-730 93-307 (312)
75 4ay9_X Follicle-stimulating ho 99.6 2.3E-14 7.8E-19 152.8 14.1 224 498-750 12-254 (350)
76 2z63_A TOLL-like receptor 4, v 99.5 3.1E-14 1.1E-18 162.7 16.0 252 481-753 15-336 (570)
77 1ziw_A TOLL-like receptor 3; i 99.5 6.4E-14 2.2E-18 163.6 18.8 115 483-599 35-160 (680)
78 2z81_A CD282 antigen, TOLL-lik 99.5 3.6E-14 1.2E-18 161.4 15.6 101 517-632 31-133 (549)
79 1jl5_A Outer protein YOPM; leu 99.5 1.2E-13 4E-18 152.3 18.6 216 481-730 139-368 (454)
80 2qen_A Walker-type ATPase; unk 99.5 1.7E-12 5.7E-17 138.4 26.8 276 154-464 11-349 (350)
81 1jl5_A Outer protein YOPM; leu 99.5 1.7E-13 5.7E-18 151.1 18.4 241 494-752 110-367 (454)
82 3oja_A Leucine-rich immune mol 99.5 4E-14 1.4E-18 157.6 13.0 201 481-732 42-250 (487)
83 3j0a_A TOLL-like receptor 5; m 99.5 1.1E-13 3.8E-18 165.1 17.4 135 498-634 7-160 (844)
84 1h6t_A Internalin B; cell adhe 99.5 6.4E-14 2.2E-18 145.0 13.3 168 493-730 44-211 (291)
85 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 138.0 10.3 153 532-730 40-192 (197)
86 2z63_A TOLL-like receptor 4, v 99.5 1.1E-13 3.9E-18 158.0 15.7 212 496-751 305-527 (570)
87 3o53_A Protein LRIM1, AGAP0063 99.5 7.3E-14 2.5E-18 146.7 12.1 201 481-732 42-250 (317)
88 3g06_A SSPH2 (leucine-rich rep 99.5 3.1E-13 1.1E-17 153.6 17.1 212 496-752 41-271 (622)
89 4glp_A Monocyte differentiatio 99.5 7.3E-14 2.5E-18 146.2 10.0 197 516-752 95-304 (310)
90 1h6t_A Internalin B; cell adhe 99.5 1.5E-13 5.1E-18 142.2 11.7 160 478-705 51-210 (291)
91 2o6s_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 134.7 10.9 79 517-597 33-113 (208)
92 2o6s_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 135.0 10.6 176 517-742 12-188 (208)
93 2ast_B S-phase kinase-associat 99.5 4.7E-14 1.6E-18 149.6 7.5 198 495-729 70-282 (336)
94 1m9s_A Internalin B; cell inva 99.5 1.9E-13 6.5E-18 155.2 12.9 99 493-597 41-144 (605)
95 1m9s_A Internalin B; cell inva 99.4 1.6E-13 5.5E-18 155.8 11.2 161 517-730 48-208 (605)
96 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.5E-18 137.8 11.4 74 517-597 46-119 (263)
97 2ca6_A RAN GTPase-activating p 99.4 3.4E-14 1.2E-18 153.8 4.4 212 493-730 30-314 (386)
98 2v9t_B SLIT homolog 2 protein 99.4 3.4E-13 1.2E-17 133.3 11.2 144 498-666 14-163 (220)
99 2v70_A SLIT-2, SLIT homolog 2 99.4 3.6E-13 1.2E-17 133.1 11.2 145 498-667 14-165 (220)
100 2fna_A Conserved hypothetical 99.4 2.1E-11 7.2E-16 130.1 25.2 275 155-463 13-356 (357)
101 4g8a_A TOLL-like receptor 4; l 99.4 4.7E-13 1.6E-17 154.9 13.2 142 500-666 36-184 (635)
102 4ay9_X Follicle-stimulating ho 99.4 7E-13 2.4E-17 141.2 13.3 200 517-752 14-233 (350)
103 4glp_A Monocyte differentiatio 99.4 5.6E-13 1.9E-17 139.4 11.9 193 495-730 91-305 (310)
104 2v9t_B SLIT homolog 2 protein 99.4 6.3E-13 2.2E-17 131.3 11.3 147 516-705 15-162 (220)
105 2ast_B S-phase kinase-associat 99.4 1.3E-13 4.5E-18 146.1 6.8 205 490-738 88-312 (336)
106 2v70_A SLIT-2, SLIT homolog 2 99.4 7.1E-13 2.4E-17 130.9 11.4 148 516-706 15-164 (220)
107 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 130.6 12.3 61 536-597 40-101 (229)
108 3cvr_A Invasion plasmid antige 99.4 1.5E-12 5.3E-17 146.0 13.8 184 496-736 60-247 (571)
109 2xot_A Amphoterin-induced prot 99.4 4.1E-13 1.4E-17 143.6 8.3 168 497-705 20-199 (361)
110 4ezg_A Putative uncharacterize 99.4 1.3E-12 4.5E-17 126.6 11.1 142 517-705 49-191 (197)
111 2xot_A Amphoterin-induced prot 99.4 5E-13 1.7E-17 143.0 8.2 174 516-730 22-200 (361)
112 3e6j_A Variable lymphocyte rec 99.4 1.7E-12 5.9E-17 129.1 11.6 146 496-667 20-171 (229)
113 1w5s_A Origin recognition comp 99.3 1.4E-11 4.9E-16 134.4 18.2 288 155-459 22-387 (412)
114 1xeu_A Internalin C; cellular 99.3 1.1E-12 3.8E-17 133.4 7.6 100 491-597 37-141 (263)
115 3cvr_A Invasion plasmid antige 99.3 8.6E-12 2.9E-16 140.0 12.7 170 516-752 63-240 (571)
116 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.5E-16 119.7 10.1 71 524-597 21-91 (193)
117 1dce_A Protein (RAB geranylger 99.3 6.1E-13 2.1E-17 150.2 1.0 29 517-546 354-382 (567)
118 2ca6_A RAN GTPase-activating p 99.2 3E-12 1E-16 138.4 4.1 206 516-752 36-313 (386)
119 2ell_A Acidic leucine-rich nuc 99.2 1.2E-11 4E-16 116.6 7.5 128 517-667 29-159 (168)
120 1w8a_A SLIT protein; signaling 99.2 1.9E-11 6.6E-16 117.8 8.6 122 518-666 14-137 (192)
121 3goz_A Leucine-rich repeat-con 99.2 7.2E-12 2.4E-16 134.1 5.7 212 495-730 22-295 (362)
122 2wfh_A SLIT homolog 2 protein 99.2 3E-11 1E-15 116.4 9.5 121 498-634 13-138 (193)
123 2je0_A Acidic leucine-rich nuc 99.2 1.2E-11 4.1E-16 113.9 6.3 90 527-632 33-123 (149)
124 1w8a_A SLIT protein; signaling 99.2 2.5E-11 8.5E-16 117.0 7.4 122 498-635 11-139 (192)
125 4b8c_D Glucose-repressible alc 99.2 8.3E-12 2.8E-16 145.5 3.3 114 528-668 216-329 (727)
126 2ell_A Acidic leucine-rich nuc 99.2 7.9E-11 2.7E-15 110.8 9.4 127 495-635 24-160 (168)
127 1a9n_A U2A', U2A'; complex (nu 99.1 4.7E-11 1.6E-15 113.3 6.7 134 493-666 17-151 (176)
128 2qby_B CDC6 homolog 3, cell di 99.1 4.2E-09 1.4E-13 113.5 22.9 277 155-448 20-339 (384)
129 3goz_A Leucine-rich repeat-con 99.1 3.6E-11 1.2E-15 128.6 5.7 190 516-730 26-264 (362)
130 4b8c_D Glucose-repressible alc 99.1 8E-11 2.7E-15 137.2 8.7 127 516-669 228-355 (727)
131 2o6r_A Variable lymphocyte rec 99.1 2.4E-10 8.2E-15 108.5 10.1 117 524-666 18-135 (177)
132 2v1u_A Cell division control p 99.1 6.4E-09 2.2E-13 112.1 22.6 275 155-448 19-351 (387)
133 1dce_A Protein (RAB geranylger 99.1 1.1E-10 3.8E-15 131.6 8.8 100 517-634 446-545 (567)
134 2je0_A Acidic leucine-rich nuc 99.1 7E-11 2.4E-15 108.7 5.8 132 534-704 15-149 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.1 9.1E-11 3.1E-15 111.3 6.3 139 531-708 14-153 (176)
136 1z7x_W Ribonuclease inhibitor; 99.1 1.5E-11 5.1E-16 136.4 0.2 38 692-730 281-324 (461)
137 2qby_A CDC6 homolog 1, cell di 99.1 1.4E-08 4.8E-13 109.4 23.4 276 155-448 20-348 (386)
138 2o6r_A Variable lymphocyte rec 99.0 6.2E-10 2.1E-14 105.6 9.6 122 497-634 9-136 (177)
139 1z7x_W Ribonuclease inhibitor; 99.0 2.9E-11 9.9E-16 134.0 0.4 183 517-730 204-409 (461)
140 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.5E-16 120.5 -3.6 119 524-669 36-154 (198)
141 3g39_A Variable lymphocyte rec 99.0 5.4E-10 1.8E-14 105.2 7.5 76 518-597 15-91 (170)
142 2r9u_A Variable lymphocyte rec 99.0 5.7E-10 2E-14 105.4 7.5 78 517-598 17-95 (174)
143 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 102.8 9.0 101 496-598 10-116 (170)
144 1fnn_A CDC6P, cell division co 99.0 2.8E-08 9.6E-13 107.2 21.0 274 155-448 17-351 (389)
145 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.9E-14 102.6 9.0 100 497-598 14-119 (174)
146 3ogk_B Coronatine-insensitive 99.0 4.2E-10 1.5E-14 128.9 6.3 61 692-753 433-499 (592)
147 3ogk_B Coronatine-insensitive 98.9 2.1E-10 7.2E-15 131.5 3.0 118 532-666 160-304 (592)
148 1ds9_A Outer arm dynein; leuci 98.9 2.4E-10 8.3E-15 110.7 0.2 127 517-661 53-180 (198)
149 1njg_A DNA polymerase III subu 98.9 2E-08 7E-13 100.4 14.3 187 155-348 23-230 (250)
150 2p1m_B Transport inhibitor res 98.8 4.8E-10 1.6E-14 128.5 1.4 76 517-594 135-221 (594)
151 3sb4_A Hypothetical leucine ri 98.7 6.6E-08 2.2E-12 101.6 13.9 211 494-739 48-316 (329)
152 2chg_A Replication factor C sm 98.7 2.3E-07 7.9E-12 91.2 15.6 167 155-346 17-204 (226)
153 3sb4_A Hypothetical leucine ri 98.7 9.1E-08 3.1E-12 100.5 12.9 169 558-750 100-305 (329)
154 2p1m_B Transport inhibitor res 98.7 3.3E-09 1.1E-13 121.5 0.5 37 692-730 429-467 (594)
155 1hqc_A RUVB; extended AAA-ATPa 98.6 4E-07 1.4E-11 95.4 14.7 185 155-349 12-214 (324)
156 2ifg_A High affinity nerve gro 98.6 4.3E-08 1.5E-12 103.9 7.2 97 499-598 12-117 (347)
157 1sxj_B Activator 1 37 kDa subu 98.5 9.7E-07 3.3E-11 92.3 13.1 170 155-346 21-210 (323)
158 2ifg_A High affinity nerve gro 98.4 2.6E-07 8.8E-12 97.9 7.8 102 517-635 13-116 (347)
159 4fdw_A Leucine rich hypothetic 98.4 5.8E-06 2E-10 88.8 16.6 187 524-738 167-363 (401)
160 2ra8_A Uncharacterized protein 98.3 2.8E-07 9.5E-12 97.3 5.3 171 527-730 130-318 (362)
161 4fdw_A Leucine rich hypothetic 98.2 3E-05 1E-09 83.3 18.6 179 491-713 176-362 (401)
162 1iqp_A RFCS; clamp loader, ext 98.2 7.5E-06 2.5E-10 85.6 13.4 172 155-348 25-214 (327)
163 3bos_A Putative DNA replicatio 98.1 1.8E-05 6.3E-10 78.5 13.0 161 155-345 28-216 (242)
164 3un9_A NLR family member X1; l 98.1 2.2E-07 7.7E-12 98.9 -1.5 115 536-666 101-222 (372)
165 2z4s_A Chromosomal replication 98.1 6E-05 2E-09 81.9 17.3 172 156-344 106-304 (440)
166 3te6_A Regulatory protein SIR3 98.1 3.6E-05 1.2E-09 78.8 14.5 158 155-315 20-213 (318)
167 3un9_A NLR family member X1; l 98.1 9.1E-07 3.1E-11 94.2 2.1 155 495-667 72-251 (372)
168 1jr3_A DNA polymerase III subu 98.0 6.6E-05 2.2E-09 80.0 15.7 185 155-346 16-221 (373)
169 1jbk_A CLPB protein; beta barr 98.0 2.5E-05 8.5E-10 74.3 10.3 46 155-202 22-67 (195)
170 2chq_A Replication factor C sm 97.9 9.2E-05 3.1E-09 76.9 13.9 169 155-345 17-203 (319)
171 3pfi_A Holliday junction ATP-d 97.9 0.00019 6.5E-09 75.2 15.9 181 155-345 29-226 (338)
172 1sxj_A Activator 1 95 kDa subu 97.8 0.00015 5.1E-09 80.6 14.9 176 155-346 39-253 (516)
173 3e4g_A ATP synthase subunit S, 97.8 2.2E-05 7.6E-10 72.6 5.7 68 528-595 53-125 (176)
174 3h4m_A Proteasome-activating n 97.8 0.00011 3.7E-09 75.1 11.2 48 155-202 17-75 (285)
175 1l8q_A Chromosomal replication 97.8 0.0007 2.4E-08 70.4 17.6 157 164-341 23-203 (324)
176 3rw6_A Nuclear RNA export fact 97.7 1.5E-05 5.1E-10 79.6 4.0 78 517-598 148-234 (267)
177 3e4g_A ATP synthase subunit S, 97.7 4E-05 1.4E-09 70.8 6.0 80 517-597 66-152 (176)
178 1sxj_D Activator 1 41 kDa subu 97.7 0.00029 1E-08 74.3 13.2 177 155-345 37-234 (353)
179 3eie_A Vacuolar protein sortin 97.7 0.00094 3.2E-08 69.3 16.4 170 155-346 18-228 (322)
180 3d8b_A Fidgetin-like protein 1 97.6 0.0012 4E-08 69.6 15.7 171 155-347 84-296 (357)
181 2ra8_A Uncharacterized protein 97.6 9.2E-05 3.2E-09 78.0 7.1 173 494-705 138-317 (362)
182 3pvs_A Replication-associated 97.5 0.00029 9.7E-09 76.4 10.7 167 155-345 26-214 (447)
183 1io0_A Tropomodulin; LRR prote 97.5 2.4E-05 8.1E-10 74.2 1.8 68 528-597 57-136 (185)
184 3b9p_A CG5977-PA, isoform A; A 97.5 0.0019 6.3E-08 66.2 16.1 169 155-346 21-233 (297)
185 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.002 6.7E-08 64.6 16.0 48 155-202 6-63 (262)
186 3syl_A Protein CBBX; photosynt 97.5 0.00057 1.9E-08 70.5 12.0 47 156-202 32-91 (309)
187 3uk6_A RUVB-like 2; hexameric 97.5 0.0021 7.3E-08 68.0 16.3 48 155-202 44-94 (368)
188 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0039 1.3E-07 64.5 17.5 172 155-347 12-224 (322)
189 2qp9_X Vacuolar protein sortin 97.4 0.0026 9E-08 66.8 16.3 169 155-346 51-261 (355)
190 1d2n_A N-ethylmaleimide-sensit 97.4 0.0052 1.8E-07 61.9 17.9 48 155-202 33-88 (272)
191 1sxj_E Activator 1 40 kDa subu 97.4 0.00053 1.8E-08 72.3 10.7 185 155-346 14-237 (354)
192 1in4_A RUVB, holliday junction 97.4 0.0065 2.2E-07 63.2 18.6 174 155-344 25-221 (334)
193 3cf0_A Transitional endoplasmi 97.4 0.0032 1.1E-07 64.5 15.8 48 155-202 15-73 (301)
194 2p65_A Hypothetical protein PF 97.3 0.00014 4.6E-09 68.7 4.6 46 155-202 22-67 (187)
195 3u61_B DNA polymerase accessor 97.3 0.0028 9.5E-08 65.8 15.0 47 155-202 26-72 (324)
196 1io0_A Tropomodulin; LRR prote 97.3 8E-05 2.7E-09 70.5 2.5 122 528-666 28-162 (185)
197 3rw6_A Nuclear RNA export fact 97.3 0.00023 7.9E-09 71.0 5.9 82 495-592 170-259 (267)
198 2zan_A Vacuolar protein sortin 97.3 0.0051 1.7E-07 66.7 16.8 171 155-346 134-345 (444)
199 3vfd_A Spastin; ATPase, microt 97.3 0.0047 1.6E-07 65.9 16.0 48 155-202 115-172 (389)
200 4b4t_J 26S protease regulatory 97.2 0.0044 1.5E-07 65.0 15.2 48 155-202 148-206 (405)
201 1sxj_C Activator 1 40 kDa subu 97.1 0.005 1.7E-07 64.3 13.6 164 155-343 25-209 (340)
202 3hu3_A Transitional endoplasmi 97.0 0.0053 1.8E-07 67.1 14.1 48 155-202 204-262 (489)
203 3n70_A Transport activator; si 97.0 0.00062 2.1E-08 61.4 5.0 47 156-202 2-48 (145)
204 1lv7_A FTSH; alpha/beta domain 97.0 0.015 5.2E-07 57.8 15.6 48 155-202 12-69 (257)
205 4b4t_M 26S protease regulatory 96.9 0.0089 3E-07 63.7 14.2 48 155-202 181-239 (434)
206 4b4t_H 26S protease regulatory 96.9 0.0047 1.6E-07 65.8 11.7 48 155-202 209-267 (467)
207 4b4t_L 26S protease subunit RP 96.9 0.0085 2.9E-07 63.9 13.7 48 155-202 181-239 (437)
208 4b4t_I 26S protease regulatory 96.8 0.0081 2.8E-07 63.3 11.8 48 155-202 182-240 (437)
209 2w58_A DNAI, primosome compone 96.7 0.003 1E-07 60.5 7.6 62 162-226 36-99 (202)
210 4b4t_K 26S protease regulatory 96.7 0.0075 2.6E-07 64.2 11.3 48 155-202 172-230 (428)
211 2ce7_A Cell division protein F 96.7 0.026 8.8E-07 61.2 15.6 48 155-202 16-73 (476)
212 4fs7_A Uncharacterized protein 96.6 0.013 4.5E-07 62.5 12.4 61 531-594 203-263 (394)
213 1a5t_A Delta prime, HOLB; zinc 96.6 0.038 1.3E-06 57.3 15.5 170 161-344 8-203 (334)
214 3cf2_A TER ATPase, transitiona 96.5 0.021 7.2E-07 65.7 14.2 48 155-202 204-262 (806)
215 3pxg_A Negative regulator of g 96.4 0.0024 8.2E-08 69.8 5.2 46 155-202 180-225 (468)
216 3co5_A Putative two-component 96.3 0.00095 3.2E-08 60.0 1.0 48 155-202 4-51 (143)
217 4gt6_A Cell surface protein; l 96.1 0.19 6.6E-06 53.3 18.4 68 689-760 305-375 (394)
218 3pxi_A Negative regulator of g 96.1 0.03 1E-06 65.3 12.7 48 155-202 491-545 (758)
219 1rz3_A Hypothetical protein rb 95.9 0.0085 2.9E-07 57.2 5.7 44 159-202 2-46 (201)
220 3c8u_A Fructokinase; YP_612366 95.9 0.0062 2.1E-07 58.5 4.7 40 163-202 7-46 (208)
221 2bjv_A PSP operon transcriptio 95.8 0.0058 2E-07 61.3 4.5 48 155-202 6-53 (265)
222 1ofh_A ATP-dependent HSL prote 95.8 0.0048 1.6E-07 63.4 4.0 48 155-202 15-74 (310)
223 3ec2_A DNA replication protein 95.8 0.0063 2.1E-07 56.9 4.1 66 160-227 19-85 (180)
224 1ypw_A Transitional endoplasmi 95.7 0.051 1.7E-06 63.5 12.4 48 155-202 204-262 (806)
225 4fs7_A Uncharacterized protein 95.7 0.029 9.9E-07 59.8 9.7 147 532-727 226-374 (394)
226 1ojl_A Transcriptional regulat 95.7 0.0087 3E-07 61.3 5.1 48 155-202 2-49 (304)
227 3rfe_A Platelet glycoprotein I 95.6 0.012 4E-07 51.6 5.0 55 540-597 12-68 (130)
228 3pxi_A Negative regulator of g 95.6 0.0083 2.8E-07 70.0 5.1 46 155-202 180-225 (758)
229 2dhr_A FTSH; AAA+ protein, hex 95.6 0.18 6.1E-06 54.9 15.1 48 155-202 31-88 (499)
230 1qvr_A CLPB protein; coiled co 95.5 0.0071 2.4E-07 71.5 4.4 46 155-202 170-215 (854)
231 2r44_A Uncharacterized protein 95.5 0.012 4.3E-07 61.0 5.8 44 155-202 27-70 (331)
232 1r6b_X CLPA protein; AAA+, N-t 95.3 0.013 4.5E-07 68.4 5.5 46 155-202 186-231 (758)
233 2r62_A Cell division protease 95.3 0.0092 3.2E-07 59.9 3.5 48 155-202 11-68 (268)
234 3hws_A ATP-dependent CLP prote 95.2 0.014 4.9E-07 61.4 5.1 48 155-202 15-75 (363)
235 4fcw_A Chaperone protein CLPB; 95.2 0.011 3.6E-07 60.9 4.0 48 155-202 17-71 (311)
236 1odf_A YGR205W, hypothetical 3 95.2 0.019 6.6E-07 58.0 5.7 28 175-202 28-55 (290)
237 1qhx_A CPT, protein (chloramph 95.2 0.01 3.5E-07 55.2 3.5 24 179-202 4-27 (178)
238 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.9E-07 54.5 3.5 24 179-202 2-25 (173)
239 2gno_A DNA polymerase III, gam 95.1 0.13 4.6E-06 52.2 11.8 133 159-313 1-152 (305)
240 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.014 4.7E-07 63.8 4.5 44 155-202 22-65 (500)
241 2c9o_A RUVB-like 1; hexameric 95.1 0.02 6.9E-07 62.3 5.8 48 155-202 37-87 (456)
242 3vaa_A Shikimate kinase, SK; s 95.0 0.013 4.5E-07 55.7 3.8 25 178-202 25-49 (199)
243 2ga8_A Hypothetical 39.9 kDa p 95.0 0.025 8.5E-07 58.2 5.9 45 158-202 2-48 (359)
244 3rfe_A Platelet glycoprotein I 95.0 0.019 6.5E-07 50.2 4.4 51 517-570 13-66 (130)
245 2qgz_A Helicase loader, putati 95.0 0.032 1.1E-06 57.0 6.7 65 160-226 133-198 (308)
246 3lw7_A Adenylate kinase relate 95.0 0.012 4.2E-07 54.4 3.2 20 179-198 2-21 (179)
247 3tlx_A Adenylate kinase 2; str 94.9 0.025 8.6E-07 55.7 5.5 44 159-202 10-53 (243)
248 1zp6_A Hypothetical protein AT 94.9 0.015 5.2E-07 54.8 3.7 25 178-202 9-33 (191)
249 3m6a_A ATP-dependent protease 94.9 0.06 2E-06 59.8 9.0 48 155-202 81-132 (543)
250 4gt6_A Cell surface protein; l 94.9 0.055 1.9E-06 57.6 8.4 58 532-592 261-319 (394)
251 1ly1_A Polynucleotide kinase; 94.8 0.016 5.4E-07 54.0 3.6 22 179-200 3-24 (181)
252 2x8a_A Nuclear valosin-contain 94.8 0.024 8.3E-07 56.9 5.1 48 155-202 10-68 (274)
253 4h09_A Hypothetical leucine ri 94.8 0.18 6.2E-06 53.1 12.2 35 556-592 214-248 (379)
254 3trf_A Shikimate kinase, SK; a 94.8 0.016 5.6E-07 54.2 3.6 25 178-202 5-29 (185)
255 1kag_A SKI, shikimate kinase I 94.7 0.015 5E-07 53.8 3.0 24 179-202 5-28 (173)
256 2rhm_A Putative kinase; P-loop 94.6 0.02 6.9E-07 53.9 3.8 26 177-202 4-29 (193)
257 3uie_A Adenylyl-sulfate kinase 94.6 0.021 7.2E-07 54.3 4.0 26 177-202 24-49 (200)
258 2hf9_A Probable hydrogenase ni 94.5 0.035 1.2E-06 53.9 5.4 39 162-202 24-62 (226)
259 2xxa_A Signal recognition part 94.5 0.33 1.1E-05 51.9 13.4 26 177-202 99-124 (433)
260 3t61_A Gluconokinase; PSI-biol 94.5 0.019 6.6E-07 54.6 3.5 25 178-202 18-42 (202)
261 3iij_A Coilin-interacting nucl 94.5 0.019 6.6E-07 53.5 3.4 25 178-202 11-35 (180)
262 1nks_A Adenylate kinase; therm 94.5 0.02 6.9E-07 53.9 3.5 24 179-202 2-25 (194)
263 4eun_A Thermoresistant glucoki 94.5 0.022 7.5E-07 54.2 3.8 26 177-202 28-53 (200)
264 1gvn_B Zeta; postsegregational 94.5 0.034 1.2E-06 56.2 5.4 26 177-202 32-57 (287)
265 2yvu_A Probable adenylyl-sulfa 94.5 0.021 7.1E-07 53.6 3.6 26 177-202 12-37 (186)
266 1kgd_A CASK, peripheral plasma 94.5 0.021 7.1E-07 53.3 3.5 25 178-202 5-29 (180)
267 1ixz_A ATP-dependent metallopr 94.5 0.028 9.5E-07 55.8 4.6 48 155-202 16-73 (254)
268 2kjq_A DNAA-related protein; s 94.4 0.014 4.9E-07 52.5 2.2 26 177-202 35-60 (149)
269 1um8_A ATP-dependent CLP prote 94.4 0.031 1.1E-06 59.1 5.2 48 155-202 21-96 (376)
270 4h09_A Hypothetical leucine ri 94.4 0.16 5.4E-06 53.6 10.6 136 531-712 212-348 (379)
271 3fwy_A Light-independent proto 94.4 0.022 7.5E-07 58.3 3.7 26 177-202 47-72 (314)
272 1knq_A Gluconate kinase; ALFA/ 94.4 0.027 9.3E-07 52.1 4.1 26 177-202 7-32 (175)
273 1kht_A Adenylate kinase; phosp 94.4 0.023 7.8E-07 53.5 3.6 46 179-227 4-49 (192)
274 1iy2_A ATP-dependent metallopr 94.3 0.044 1.5E-06 55.2 5.7 48 155-202 40-97 (278)
275 1zuh_A Shikimate kinase; alpha 94.3 0.025 8.5E-07 52.0 3.6 26 177-202 6-31 (168)
276 2ze6_A Isopentenyl transferase 94.3 0.024 8.3E-07 56.2 3.7 24 179-202 2-25 (253)
277 2wsm_A Hydrogenase expression/ 94.3 0.036 1.2E-06 53.5 4.9 42 159-202 13-54 (221)
278 1via_A Shikimate kinase; struc 94.3 0.021 7.1E-07 53.0 3.0 24 179-202 5-28 (175)
279 1y63_A LMAJ004144AAA protein; 94.3 0.027 9.4E-07 52.7 3.8 25 177-201 9-33 (184)
280 3tqc_A Pantothenate kinase; bi 94.2 0.044 1.5E-06 56.0 5.5 45 158-202 70-116 (321)
281 2c95_A Adenylate kinase 1; tra 94.2 0.027 9.2E-07 53.2 3.7 26 177-202 8-33 (196)
282 2jaq_A Deoxyguanosine kinase; 94.2 0.025 8.7E-07 53.8 3.5 23 180-202 2-24 (205)
283 1ukz_A Uridylate kinase; trans 94.2 0.03 1E-06 53.3 4.0 26 177-202 14-39 (203)
284 1tev_A UMP-CMP kinase; ploop, 94.2 0.027 9.4E-07 53.1 3.7 25 178-202 3-27 (196)
285 3tau_A Guanylate kinase, GMP k 94.2 0.029 9.9E-07 53.7 3.8 26 177-202 7-32 (208)
286 1uf9_A TT1252 protein; P-loop, 94.1 0.03 1E-06 53.3 3.8 25 177-201 7-31 (203)
287 2qor_A Guanylate kinase; phosp 94.1 0.023 8E-07 54.2 3.1 26 177-202 11-36 (204)
288 3t15_A Ribulose bisphosphate c 94.1 0.032 1.1E-06 56.7 4.2 26 177-202 35-60 (293)
289 2iyv_A Shikimate kinase, SK; t 94.1 0.022 7.5E-07 53.3 2.8 24 179-202 3-26 (184)
290 3hr8_A Protein RECA; alpha and 94.1 0.08 2.7E-06 54.9 7.1 98 166-266 48-150 (356)
291 2bdt_A BH3686; alpha-beta prot 94.1 0.029 1E-06 52.7 3.6 22 179-200 3-24 (189)
292 3tr0_A Guanylate kinase, GMP k 94.1 0.031 1.1E-06 53.2 3.8 25 178-202 7-31 (205)
293 2p5t_B PEZT; postsegregational 94.0 0.036 1.2E-06 54.9 4.3 40 163-202 14-56 (253)
294 2j41_A Guanylate kinase; GMP, 94.0 0.033 1.1E-06 53.2 3.8 25 178-202 6-30 (207)
295 2qt1_A Nicotinamide riboside k 94.0 0.032 1.1E-06 53.3 3.7 26 177-202 20-45 (207)
296 3umf_A Adenylate kinase; rossm 94.0 0.036 1.2E-06 53.2 4.0 26 177-202 28-53 (217)
297 3io5_A Recombination and repai 94.0 0.19 6.4E-06 50.7 9.3 88 180-268 30-124 (333)
298 1g41_A Heat shock protein HSLU 93.9 0.042 1.4E-06 58.6 4.8 48 155-202 15-74 (444)
299 2cdn_A Adenylate kinase; phosp 93.9 0.037 1.3E-06 52.6 4.0 26 177-202 19-44 (201)
300 3cm0_A Adenylate kinase; ATP-b 93.9 0.035 1.2E-06 51.9 3.8 25 178-202 4-28 (186)
301 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.033 1.1E-06 55.4 3.8 25 178-202 4-28 (260)
302 2if2_A Dephospho-COA kinase; a 93.9 0.03 1E-06 53.4 3.3 22 179-200 2-23 (204)
303 1e6c_A Shikimate kinase; phosp 93.9 0.028 9.4E-07 51.9 3.0 24 179-202 3-26 (173)
304 2plr_A DTMP kinase, probable t 93.9 0.036 1.2E-06 53.1 3.9 25 178-202 4-28 (213)
305 2bwj_A Adenylate kinase 5; pho 93.9 0.032 1.1E-06 52.8 3.5 25 178-202 12-36 (199)
306 3asz_A Uridine kinase; cytidin 93.9 0.034 1.1E-06 53.3 3.7 26 177-202 5-30 (211)
307 1xjc_A MOBB protein homolog; s 93.8 0.037 1.3E-06 50.7 3.6 26 177-202 3-28 (169)
308 1cke_A CK, MSSA, protein (cyti 93.8 0.032 1.1E-06 54.1 3.5 24 179-202 6-29 (227)
309 3p32_A Probable GTPase RV1496/ 93.7 0.1 3.5E-06 54.6 7.3 40 163-202 64-103 (355)
310 1ye8_A Protein THEP1, hypothet 93.7 0.036 1.2E-06 51.5 3.5 23 180-202 2-24 (178)
311 2bbw_A Adenylate kinase 4, AK4 93.7 0.037 1.3E-06 54.6 3.8 25 178-202 27-51 (246)
312 1aky_A Adenylate kinase; ATP:A 93.7 0.038 1.3E-06 53.4 3.8 26 177-202 3-28 (220)
313 1qf9_A UMP/CMP kinase, protein 93.7 0.043 1.5E-06 51.6 4.0 26 177-202 5-30 (194)
314 2pt5_A Shikimate kinase, SK; a 93.7 0.038 1.3E-06 50.7 3.5 23 180-202 2-24 (168)
315 2vli_A Antibiotic resistance p 93.7 0.026 8.9E-07 52.7 2.3 25 178-202 5-29 (183)
316 4gp7_A Metallophosphoesterase; 93.6 0.032 1.1E-06 51.5 2.9 23 178-200 9-31 (171)
317 3a00_A Guanylate kinase, GMP k 93.6 0.031 1.1E-06 52.4 2.9 24 179-202 2-25 (186)
318 1jjv_A Dephospho-COA kinase; P 93.6 0.038 1.3E-06 52.8 3.5 22 179-200 3-24 (206)
319 1uj2_A Uridine-cytidine kinase 93.6 0.041 1.4E-06 54.4 3.9 26 177-202 21-46 (252)
320 3kl4_A SRP54, signal recogniti 93.6 0.18 6.3E-06 53.6 9.0 26 177-202 96-121 (433)
321 3dm5_A SRP54, signal recogniti 93.6 0.17 5.8E-06 53.9 8.7 26 177-202 99-124 (443)
322 1g8p_A Magnesium-chelatase 38 93.6 0.032 1.1E-06 58.3 3.2 46 155-202 24-69 (350)
323 2pbr_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 51.8 3.5 23 180-202 2-24 (195)
324 1nn5_A Similar to deoxythymidy 93.5 0.045 1.5E-06 52.5 3.8 25 178-202 9-33 (215)
325 2grj_A Dephospho-COA kinase; T 93.5 0.043 1.5E-06 51.7 3.5 26 177-202 11-36 (192)
326 1j8m_F SRP54, signal recogniti 93.5 0.16 5.3E-06 51.5 7.9 37 178-217 98-134 (297)
327 2wwf_A Thymidilate kinase, put 93.4 0.045 1.5E-06 52.4 3.6 25 178-202 10-34 (212)
328 1ex7_A Guanylate kinase; subst 93.4 0.038 1.3E-06 51.6 2.9 24 179-202 2-25 (186)
329 1zd8_A GTP:AMP phosphotransfer 93.4 0.042 1.4E-06 53.4 3.4 25 178-202 7-31 (227)
330 2zr9_A Protein RECA, recombina 93.3 0.14 4.9E-06 53.1 7.5 88 177-267 60-151 (349)
331 1lvg_A Guanylate kinase, GMP k 93.3 0.038 1.3E-06 52.5 2.9 25 178-202 4-28 (198)
332 3ney_A 55 kDa erythrocyte memb 93.3 0.049 1.7E-06 51.3 3.6 26 177-202 18-43 (197)
333 3aez_A Pantothenate kinase; tr 93.3 0.05 1.7E-06 55.6 3.9 26 177-202 89-114 (312)
334 2z43_A DNA repair and recombin 93.3 0.17 5.9E-06 52.0 8.0 55 177-231 106-168 (324)
335 3e70_C DPA, signal recognition 93.3 0.074 2.5E-06 54.6 5.1 26 177-202 128-153 (328)
336 4e22_A Cytidylate kinase; P-lo 93.2 0.053 1.8E-06 53.7 3.9 26 177-202 26-51 (252)
337 3fb4_A Adenylate kinase; psych 93.2 0.049 1.7E-06 52.4 3.5 23 180-202 2-24 (216)
338 1v5w_A DMC1, meiotic recombina 93.2 0.23 7.8E-06 51.5 8.9 64 167-231 111-183 (343)
339 1zak_A Adenylate kinase; ATP:A 93.2 0.045 1.5E-06 53.0 3.2 26 177-202 4-29 (222)
340 2v54_A DTMP kinase, thymidylat 93.1 0.057 1.9E-06 51.3 3.8 25 178-202 4-28 (204)
341 2jeo_A Uridine-cytidine kinase 93.1 0.057 1.9E-06 53.2 3.9 26 177-202 24-49 (245)
342 1rj9_A FTSY, signal recognitio 93.1 0.056 1.9E-06 55.0 3.9 26 177-202 101-126 (304)
343 3k1j_A LON protease, ATP-depen 93.1 0.098 3.3E-06 59.1 6.3 44 155-202 41-84 (604)
344 1htw_A HI0065; nucleotide-bind 93.0 0.065 2.2E-06 48.6 3.8 26 177-202 32-57 (158)
345 2z0h_A DTMP kinase, thymidylat 93.0 0.055 1.9E-06 51.0 3.5 23 180-202 2-24 (197)
346 3dl0_A Adenylate kinase; phosp 93.0 0.053 1.8E-06 52.2 3.5 23 180-202 2-24 (216)
347 1m7g_A Adenylylsulfate kinase; 93.0 0.062 2.1E-06 51.5 3.9 26 177-202 24-49 (211)
348 1xp8_A RECA protein, recombina 93.0 0.18 6E-06 52.7 7.6 88 177-267 73-164 (366)
349 1zu4_A FTSY; GTPase, signal re 93.0 0.11 3.7E-06 53.2 5.9 26 177-202 104-129 (320)
350 1znw_A Guanylate kinase, GMP k 92.9 0.06 2.1E-06 51.4 3.7 25 178-202 20-44 (207)
351 1gtv_A TMK, thymidylate kinase 92.9 0.031 1.1E-06 53.7 1.6 24 179-202 1-24 (214)
352 1g5t_A COB(I)alamin adenosyltr 92.9 0.27 9.2E-06 45.9 7.8 103 179-284 29-163 (196)
353 1n0w_A DNA repair protein RAD5 92.9 0.12 4.2E-06 50.4 6.0 40 177-217 23-66 (243)
354 2pez_A Bifunctional 3'-phospho 92.9 0.065 2.2E-06 49.7 3.8 26 177-202 4-29 (179)
355 1tue_A Replication protein E1; 92.9 0.089 3.1E-06 49.4 4.5 38 164-202 45-82 (212)
356 2f6r_A COA synthase, bifunctio 92.8 0.064 2.2E-06 54.0 3.8 23 177-199 74-96 (281)
357 1z6g_A Guanylate kinase; struc 92.8 0.054 1.9E-06 52.2 3.1 25 178-202 23-47 (218)
358 1vht_A Dephospho-COA kinase; s 92.7 0.07 2.4E-06 51.4 3.9 23 178-200 4-26 (218)
359 2px0_A Flagellar biosynthesis 92.7 0.069 2.4E-06 54.1 3.9 26 177-202 104-129 (296)
360 3nwj_A ATSK2; P loop, shikimat 92.7 0.055 1.9E-06 53.3 3.0 24 179-202 49-72 (250)
361 3b85_A Phosphate starvation-in 92.5 0.081 2.8E-06 50.5 3.9 23 179-201 23-45 (208)
362 1s96_A Guanylate kinase, GMP k 92.5 0.075 2.6E-06 51.2 3.7 26 177-202 15-40 (219)
363 1sq5_A Pantothenate kinase; P- 92.4 0.13 4.4E-06 52.6 5.6 26 177-202 79-104 (308)
364 3ake_A Cytidylate kinase; CMP 92.4 0.074 2.5E-06 50.6 3.5 24 179-202 3-26 (208)
365 2onk_A Molybdate/tungstate ABC 92.4 0.12 4E-06 50.6 5.0 25 177-202 24-48 (240)
366 2cvh_A DNA repair and recombin 92.4 0.1 3.6E-06 50.1 4.6 35 177-217 19-53 (220)
367 3be4_A Adenylate kinase; malar 92.4 0.072 2.5E-06 51.3 3.4 24 179-202 6-29 (217)
368 3r20_A Cytidylate kinase; stru 92.3 0.077 2.6E-06 51.4 3.5 25 178-202 9-33 (233)
369 3d3q_A TRNA delta(2)-isopenten 92.3 0.077 2.6E-06 54.4 3.7 24 179-202 8-31 (340)
370 1ak2_A Adenylate kinase isoenz 92.3 0.086 2.9E-06 51.4 3.9 25 178-202 16-40 (233)
371 3sr0_A Adenylate kinase; phosp 92.3 0.081 2.8E-06 50.4 3.5 37 180-224 2-38 (206)
372 2i3b_A HCR-ntpase, human cance 92.3 0.066 2.3E-06 50.2 2.9 24 179-202 2-25 (189)
373 2xb4_A Adenylate kinase; ATP-b 92.3 0.078 2.7E-06 51.3 3.5 23 180-202 2-24 (223)
374 4a1f_A DNAB helicase, replicat 92.2 0.45 1.5E-05 48.8 9.3 47 177-226 45-95 (338)
375 3bh0_A DNAB-like replicative h 92.2 0.26 9.1E-06 50.4 7.7 47 177-226 67-117 (315)
376 3b9q_A Chloroplast SRP recepto 92.2 0.084 2.9E-06 53.6 3.8 26 177-202 99-124 (302)
377 1e4v_A Adenylate kinase; trans 92.2 0.078 2.7E-06 50.9 3.4 23 180-202 2-24 (214)
378 4a74_A DNA repair and recombin 92.2 0.089 3E-06 51.0 3.9 26 177-202 24-49 (231)
379 2q6t_A DNAB replication FORK h 92.1 0.88 3E-05 49.0 12.0 39 177-217 199-237 (444)
380 1svm_A Large T antigen; AAA+ f 92.1 0.16 5.3E-06 53.3 5.8 38 165-202 156-193 (377)
381 1np6_A Molybdopterin-guanine d 92.1 0.099 3.4E-06 48.2 3.8 26 177-202 5-30 (174)
382 1vma_A Cell division protein F 92.0 0.094 3.2E-06 53.3 3.9 26 177-202 103-128 (306)
383 3end_A Light-independent proto 92.0 0.089 3E-06 53.8 3.8 38 177-217 40-77 (307)
384 3tif_A Uncharacterized ABC tra 92.0 0.12 4.2E-06 50.3 4.6 26 177-202 30-55 (235)
385 2f1r_A Molybdopterin-guanine d 92.0 0.053 1.8E-06 49.9 1.8 24 179-202 3-26 (171)
386 2ehv_A Hypothetical protein PH 91.9 0.083 2.9E-06 52.0 3.4 24 177-200 29-52 (251)
387 1qvr_A CLPB protein; coiled co 91.9 1 3.4E-05 53.1 13.2 48 155-202 558-612 (854)
388 3a8t_A Adenylate isopentenyltr 91.9 0.1 3.4E-06 53.4 3.9 26 177-202 39-64 (339)
389 3crm_A TRNA delta(2)-isopenten 91.9 0.091 3.1E-06 53.5 3.6 25 178-202 5-29 (323)
390 2dr3_A UPF0273 protein PH0284; 91.8 0.15 5E-06 50.0 5.0 37 178-217 23-59 (247)
391 1yrb_A ATP(GTP)binding protein 91.7 0.11 3.8E-06 51.5 4.0 26 177-202 13-38 (262)
392 2pcj_A ABC transporter, lipopr 91.7 0.12 4.1E-06 49.9 4.1 25 178-202 30-54 (224)
393 3lnc_A Guanylate kinase, GMP k 91.6 0.066 2.3E-06 52.1 2.2 25 178-202 27-52 (231)
394 3gfo_A Cobalt import ATP-bindi 91.6 0.12 4.3E-06 51.5 4.2 25 178-202 34-58 (275)
395 3exa_A TRNA delta(2)-isopenten 91.6 0.11 3.9E-06 52.2 3.9 25 178-202 3-27 (322)
396 1q3t_A Cytidylate kinase; nucl 91.6 0.12 4E-06 50.5 3.9 26 177-202 15-40 (236)
397 1b0u_A Histidine permease; ABC 91.6 0.14 4.9E-06 50.8 4.6 26 177-202 31-56 (262)
398 2vhj_A Ntpase P4, P4; non- hyd 91.5 0.11 3.8E-06 52.6 3.6 24 178-201 123-146 (331)
399 2og2_A Putative signal recogni 91.4 0.11 3.9E-06 53.8 3.8 26 177-202 156-181 (359)
400 3zvl_A Bifunctional polynucleo 91.4 0.11 3.6E-06 55.7 3.7 26 177-202 257-282 (416)
401 2olj_A Amino acid ABC transpor 91.3 0.16 5.4E-06 50.4 4.6 26 177-202 49-74 (263)
402 3foz_A TRNA delta(2)-isopenten 91.3 0.14 4.7E-06 51.6 4.1 26 177-202 9-34 (316)
403 2b8t_A Thymidine kinase; deoxy 91.3 0.11 3.7E-06 50.0 3.2 104 177-284 11-126 (223)
404 1a7j_A Phosphoribulokinase; tr 91.2 0.066 2.3E-06 54.1 1.7 26 177-202 4-29 (290)
405 2i1q_A DNA repair and recombin 91.2 0.37 1.3E-05 49.5 7.4 25 177-201 97-121 (322)
406 1ji0_A ABC transporter; ATP bi 91.2 0.15 5.2E-06 49.8 4.2 25 178-202 32-56 (240)
407 2ff7_A Alpha-hemolysin translo 91.1 0.15 5.2E-06 50.1 4.2 25 178-202 35-59 (247)
408 1ltq_A Polynucleotide kinase; 91.1 0.12 4E-06 52.7 3.6 23 179-201 3-25 (301)
409 1sgw_A Putative ABC transporte 91.1 0.13 4.5E-06 49.2 3.6 25 178-202 35-59 (214)
410 2pze_A Cystic fibrosis transme 91.1 0.16 5.4E-06 49.3 4.2 25 178-202 34-58 (229)
411 2ixe_A Antigen peptide transpo 91.0 0.17 5.9E-06 50.4 4.6 26 177-202 44-69 (271)
412 2r8r_A Sensor protein; KDPD, P 91.0 0.19 6.5E-06 48.1 4.6 23 180-202 8-30 (228)
413 2cbz_A Multidrug resistance-as 91.0 0.11 3.9E-06 50.6 3.2 26 177-202 30-55 (237)
414 1vpl_A ABC transporter, ATP-bi 91.0 0.18 6.1E-06 49.8 4.6 26 177-202 40-65 (256)
415 1oix_A RAS-related protein RAB 90.9 0.12 4.3E-06 48.4 3.3 25 178-202 29-53 (191)
416 1g6h_A High-affinity branched- 90.9 0.16 5.5E-06 50.2 4.2 25 178-202 33-57 (257)
417 4eaq_A DTMP kinase, thymidylat 90.9 0.16 5.3E-06 49.4 4.0 26 177-202 25-50 (229)
418 2r6a_A DNAB helicase, replicat 90.9 1.1 3.9E-05 48.3 11.3 39 177-217 202-240 (454)
419 1r6b_X CLPA protein; AAA+, N-t 90.9 0.16 5.3E-06 59.3 4.7 48 155-202 458-512 (758)
420 2ged_A SR-beta, signal recogni 90.9 0.22 7.4E-06 46.6 4.9 26 177-202 47-72 (193)
421 3f9v_A Minichromosome maintena 90.8 0.069 2.4E-06 59.9 1.6 49 154-202 294-351 (595)
422 2d2e_A SUFC protein; ABC-ATPas 90.8 0.13 4.4E-06 50.7 3.4 24 178-201 29-52 (250)
423 2ffh_A Protein (FFH); SRP54, s 90.8 0.42 1.4E-05 50.8 7.5 25 178-202 98-122 (425)
424 2yhs_A FTSY, cell division pro 90.8 0.15 5E-06 55.0 4.0 26 177-202 292-317 (503)
425 2w0m_A SSO2452; RECA, SSPF, un 90.7 0.13 4.6E-06 49.8 3.4 25 178-202 23-47 (235)
426 2dyk_A GTP-binding protein; GT 90.6 0.16 5.3E-06 45.8 3.6 24 179-202 2-25 (161)
427 2yz2_A Putative ABC transporte 90.6 0.2 6.8E-06 49.8 4.6 26 177-202 32-57 (266)
428 1u0j_A DNA replication protein 90.6 0.27 9.2E-06 48.4 5.4 36 166-201 92-127 (267)
429 2zu0_C Probable ATP-dependent 90.6 0.15 5.2E-06 50.7 3.7 25 177-201 45-69 (267)
430 1ls1_A Signal recognition part 90.6 0.15 5.2E-06 51.6 3.7 25 178-202 98-122 (295)
431 1u94_A RECA protein, recombina 90.6 0.19 6.4E-06 52.3 4.5 38 177-217 62-99 (356)
432 1tq4_A IIGP1, interferon-induc 90.6 0.15 5E-06 54.1 3.7 36 166-201 57-92 (413)
433 2wji_A Ferrous iron transport 90.5 0.14 4.9E-06 46.5 3.2 23 179-201 4-26 (165)
434 4g1u_C Hemin import ATP-bindin 90.5 0.12 4.1E-06 51.4 2.8 25 178-202 37-61 (266)
435 1mv5_A LMRA, multidrug resista 90.5 0.14 4.8E-06 50.2 3.3 26 177-202 27-52 (243)
436 2v9p_A Replication protein E1; 90.5 0.16 5.4E-06 51.4 3.7 26 177-202 125-150 (305)
437 1cp2_A CP2, nitrogenase iron p 90.4 0.23 7.7E-06 49.5 4.9 36 179-217 2-37 (269)
438 2ihy_A ABC transporter, ATP-bi 90.4 0.19 6.5E-06 50.3 4.2 25 178-202 47-71 (279)
439 2ocp_A DGK, deoxyguanosine kin 90.4 0.16 5.5E-06 49.7 3.6 25 178-202 2-26 (241)
440 2j37_W Signal recognition part 90.3 0.24 8.1E-06 54.0 5.2 26 177-202 100-125 (504)
441 2f9l_A RAB11B, member RAS onco 90.3 0.16 5.6E-06 47.9 3.5 25 178-202 5-29 (199)
442 2eyu_A Twitching motility prot 90.3 0.18 6.3E-06 49.9 3.9 26 177-202 24-49 (261)
443 2ghi_A Transport protein; mult 90.3 0.15 5E-06 50.6 3.2 26 177-202 45-70 (260)
444 2zej_A Dardarin, leucine-rich 90.1 0.12 4.2E-06 48.0 2.5 22 180-201 4-25 (184)
445 1nlf_A Regulatory protein REPA 90.1 0.15 5.1E-06 51.2 3.2 25 178-202 30-54 (279)
446 2qmh_A HPR kinase/phosphorylas 90.1 0.16 5.5E-06 47.4 3.1 25 178-202 34-58 (205)
447 2p67_A LAO/AO transport system 90.0 0.32 1.1E-05 50.4 5.7 27 176-202 54-80 (341)
448 2qi9_C Vitamin B12 import ATP- 90.0 0.14 4.8E-06 50.3 2.8 25 178-202 26-50 (249)
449 2v3c_C SRP54, signal recogniti 90.0 0.11 3.8E-06 55.5 2.2 26 177-202 98-123 (432)
450 2ce2_X GTPase HRAS; signaling 90.0 0.16 5.5E-06 45.8 3.1 23 180-202 5-27 (166)
451 2afh_E Nitrogenase iron protei 89.9 0.17 5.8E-06 51.1 3.4 24 179-202 3-26 (289)
452 2vp4_A Deoxynucleoside kinase; 89.9 0.13 4.6E-06 49.9 2.5 25 177-201 19-43 (230)
453 1g8f_A Sulfate adenylyltransfe 89.9 0.2 6.9E-06 54.5 4.1 45 158-202 375-419 (511)
454 2qm8_A GTPase/ATPase; G protei 89.9 0.31 1.1E-05 50.3 5.4 36 167-202 44-79 (337)
455 1cr0_A DNA primase/helicase; R 89.8 0.18 6.2E-06 51.1 3.6 26 177-202 34-59 (296)
456 2nq2_C Hypothetical ABC transp 89.8 0.15 5.1E-06 50.3 2.8 25 178-202 31-55 (253)
457 1z2a_A RAS-related protein RAB 89.7 0.18 6.1E-06 45.7 3.2 25 178-202 5-29 (168)
458 2wjg_A FEOB, ferrous iron tran 89.7 0.21 7.2E-06 46.4 3.7 24 178-201 7-30 (188)
459 3con_A GTPase NRAS; structural 89.7 0.18 6.1E-06 47.0 3.2 24 179-202 22-45 (190)
460 3gmt_A Adenylate kinase; ssgci 89.7 0.19 6.3E-06 48.5 3.3 24 179-202 9-32 (230)
461 3nh6_A ATP-binding cassette SU 89.6 0.21 7E-06 50.7 3.7 26 177-202 79-104 (306)
462 2lkc_A Translation initiation 89.4 0.25 8.6E-06 45.3 4.0 26 177-202 7-32 (178)
463 3lda_A DNA repair protein RAD5 89.4 0.65 2.2E-05 49.0 7.5 52 166-217 166-220 (400)
464 3eph_A TRNA isopentenyltransfe 89.4 0.2 6.8E-06 52.4 3.5 24 179-202 3-26 (409)
465 3def_A T7I23.11 protein; chlor 89.3 0.38 1.3E-05 47.7 5.4 39 164-202 22-60 (262)
466 1fzq_A ADP-ribosylation factor 89.3 0.26 9E-06 45.6 4.0 25 177-201 15-39 (181)
467 1u8z_A RAS-related protein RAL 89.2 0.21 7.2E-06 45.1 3.2 24 179-202 5-28 (168)
468 2nzj_A GTP-binding protein REM 89.1 0.19 6.6E-06 45.9 2.9 25 178-202 4-28 (175)
469 1nrj_B SR-beta, signal recogni 89.1 0.25 8.6E-06 47.2 3.8 26 177-202 11-36 (218)
470 1pgv_A TMD-1, tropomodulin TMD 89.0 0.15 5E-06 47.9 2.0 114 495-633 41-168 (197)
471 2gj8_A MNME, tRNA modification 89.0 0.21 7E-06 45.9 3.0 23 179-201 5-27 (172)
472 2axn_A 6-phosphofructo-2-kinas 88.9 0.24 8.4E-06 54.4 4.0 26 177-202 34-59 (520)
473 2pjz_A Hypothetical protein ST 88.9 0.19 6.5E-06 49.8 2.8 23 179-201 31-53 (263)
474 1c1y_A RAS-related protein RAP 88.9 0.23 7.7E-06 45.0 3.2 24 179-202 4-27 (167)
475 2e87_A Hypothetical protein PH 88.9 20 0.00068 36.9 18.6 26 177-202 166-191 (357)
476 1p5z_B DCK, deoxycytidine kina 88.8 0.14 4.9E-06 50.8 1.9 26 177-202 23-48 (263)
477 1z08_A RAS-related protein RAB 88.8 0.23 7.8E-06 45.1 3.2 24 179-202 7-30 (170)
478 1m7b_A RND3/RHOE small GTP-bin 88.8 0.22 7.5E-06 46.2 3.1 25 178-202 7-31 (184)
479 1h65_A Chloroplast outer envel 88.8 0.43 1.5E-05 47.5 5.4 40 163-202 24-63 (270)
480 3sop_A Neuronal-specific septi 88.7 0.23 7.7E-06 49.5 3.3 23 180-202 4-26 (270)
481 3t1o_A Gliding protein MGLA; G 88.7 0.23 7.9E-06 46.4 3.2 24 179-202 15-38 (198)
482 3upu_A ATP-dependent DNA helic 88.7 0.45 1.6E-05 51.5 5.9 40 160-202 30-69 (459)
483 1svi_A GTP-binding protein YSX 88.6 0.27 9.2E-06 45.9 3.6 25 177-201 22-46 (195)
484 1ek0_A Protein (GTP-binding pr 88.6 0.24 8.2E-06 44.9 3.2 23 180-202 5-27 (170)
485 1z0j_A RAB-22, RAS-related pro 88.6 0.24 8.2E-06 44.9 3.2 24 179-202 7-30 (170)
486 3q85_A GTP-binding protein REM 88.6 0.23 7.8E-06 45.1 3.0 23 179-201 3-25 (169)
487 3ihw_A Centg3; RAS, centaurin, 88.6 0.24 8.2E-06 46.0 3.2 24 178-201 20-43 (184)
488 2erx_A GTP-binding protein DI- 88.6 0.24 8.1E-06 45.0 3.1 23 179-201 4-26 (172)
489 1kao_A RAP2A; GTP-binding prot 88.6 0.24 8.3E-06 44.7 3.2 24 179-202 4-27 (167)
490 4gzl_A RAS-related C3 botulinu 88.6 0.26 8.9E-06 46.7 3.5 26 177-202 29-54 (204)
491 2h92_A Cytidylate kinase; ross 88.6 0.22 7.4E-06 47.9 2.9 24 179-202 4-27 (219)
492 1r8s_A ADP-ribosylation factor 88.5 0.25 8.6E-06 44.6 3.3 22 181-202 3-24 (164)
493 2orw_A Thymidine kinase; TMTK, 88.5 0.27 9.1E-06 45.8 3.4 24 179-202 4-27 (184)
494 1pzn_A RAD51, DNA repair and r 88.5 0.29 1E-05 50.8 4.1 26 177-202 130-155 (349)
495 3io3_A DEHA2D07832P; chaperone 88.5 0.27 9.2E-06 50.9 3.8 26 177-202 17-42 (348)
496 3fdi_A Uncharacterized protein 88.4 0.28 9.5E-06 46.4 3.5 25 178-202 6-30 (201)
497 2bbs_A Cystic fibrosis transme 88.4 0.23 7.9E-06 50.0 3.1 26 177-202 63-88 (290)
498 1nij_A Hypothetical protein YJ 88.4 0.22 7.4E-06 51.1 2.9 26 177-202 3-28 (318)
499 2hxs_A RAB-26, RAS-related pro 88.3 0.27 9.3E-06 45.1 3.4 25 178-202 6-30 (178)
500 4edh_A DTMP kinase, thymidylat 88.3 0.47 1.6E-05 45.3 5.1 25 178-202 6-30 (213)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.5e-44 Score=403.41 Aligned_cols=299 Identities=15% Similarity=0.158 Sum_probs=237.1
Q ss_pred ccccchhhhHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHh--hhccccCCCCEEEEEEe--------chHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-QKNRGIIGLYGIGGVGKTTLLKQVNN--NFCHQQHNFDVVIWAAV--------QTFQDD 223 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~--~~~~~~~~F~~~~wv~v--------~~i~~~ 223 (779)
+..+||++++++|.++|..+ +...++|+|+||||+||||||+++|+ +. +++.+|++++||++ ..++..
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 34359999999999999765 44689999999999999999999998 44 66899999999998 246778
Q ss_pred HHHHhCCCcc----hhhhhcchhhHHHHHHHhhCCC-cceeehhhcccccc---ccCCCcEEEEEeCchhhhhhcC--Cc
Q 004021 224 IGKRIGFSED----KKWKEKSLQDKAVDISSILSPK-KFRIDLTELGVPLQ---MLNAGFKIVLKTRSAGVCDQMD--SK 293 (779)
Q Consensus 224 i~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~k-r~~~~ld~l~~~~~---~~~~gs~IivTTR~~~va~~~~--~~ 293 (779)
|+.+++.... ......+.+++...+++.|+++ ||++++|+++..-. ...+||+||||||+..|+..++ ..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 8888875411 0112234456788999999996 99999999976421 1338999999999999998875 36
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHHHHHHHhcccCcCC
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRERAIEKMRTSASTFS 373 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~ 373 (779)
.|+|++|++++||+||.++++... .++.+++++++|+++|+|+||||+++|+.++.+ .|... +.+....+...
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l~~~~ 359 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKLESRG 359 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHHHHHC
T ss_pred EEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHhhccc
Confidence 799999999999999999987653 246788899999999999999999999999764 25443 44444322211
Q ss_pred CchHHHHHHHHHHHhcCCccchhhhhh-----------hccccCCCcccChHHHHHHHHHc--CCCcch-------hhHH
Q 004021 374 GMEENVFLRLKFSYDSLSMDKLRSCLL-----------YCCLYPEDYKIPKRSLIDYWISE--GFMADF-------DRGC 433 (779)
Q Consensus 374 ~~~~~i~~~l~~sy~~L~~~~~k~cf~-----------~~s~fp~~~~i~~~~Li~~W~a~--g~~~~~-------~~~~ 433 (779)
...+..++.+||+.||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+... +.+.
T Consensus 360 --~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 360 --LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp --SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred --HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 13577788999999998 8999999 999999999999 8999999 888642 3444
Q ss_pred HHHHHHHHccccccc---CCCcEEechHHHHHHHHHHhh
Q 004021 434 EFINDLLHACLLEEE---GDDHVKMHDMIREMSLWIAWT 469 (779)
Q Consensus 434 ~~l~~L~~~sll~~~---~~~~~~mHdlv~~~a~~~~~~ 469 (779)
+|++|+++||++.. ...+|+|||+||+||++++.+
T Consensus 433 -~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp -HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred -HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 99999999999986 345799999999999988866
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.3e-37 Score=385.74 Aligned_cols=305 Identities=16% Similarity=0.256 Sum_probs=248.5
Q ss_pred cccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccC-CCCEEEEEEec--------hHHHHH
Q 004021 154 EQTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQH-NFDVVIWAAVQ--------TFQDDI 224 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~-~F~~~~wv~v~--------~i~~~i 224 (779)
.+.||||++++++|.++|...++..++|+|+||||+||||||+++|++...+.. .|+.++||++. ..+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 467999999999999999876667899999999999999999999998522244 45788899981 235556
Q ss_pred HHHhCCCcc-hhhhhcchhhHHHHHHHhhCCC--cceeehhhcccc--ccccCCCcEEEEEeCchhhhhhc-C-CceeEc
Q 004021 225 GKRIGFSED-KKWKEKSLQDKAVDISSILSPK--KFRIDLTELGVP--LQMLNAGFKIVLKTRSAGVCDQM-D-SKNLEV 297 (779)
Q Consensus 225 ~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~k--r~~~~ld~l~~~--~~~~~~gs~IivTTR~~~va~~~-~-~~~~~l 297 (779)
+..+..... ......+.++....++..+.++ |+++++|++... +...++||+||||||++.++..+ + ...+++
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~ 282 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPV 282 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEEC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEe
Confidence 666654311 1112345677888899999887 999999998764 33457899999999999998653 4 678899
Q ss_pred cC-CChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHHHHHHHhcccCcC----
Q 004021 298 YS-LAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRERAIEKMRTSASTF---- 372 (779)
Q Consensus 298 ~~-L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~---- 372 (779)
++ |++++|++||...++... +.+++++++|+++|+|+||||+++|++|+.+. ..|...++.+....+..
T Consensus 283 ~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~ 356 (1249)
T 3sfz_A 283 ESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKS 356 (1249)
T ss_dssp CSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCT
T ss_pred cCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccc
Confidence 96 999999999999885433 44567899999999999999999999998754 57999998887764321
Q ss_pred -CCchHHHHHHHHHHHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCcchhhHHHHHHHHHHcccccccCCC
Q 004021 373 -SGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADFDRGCEFINDLLHACLLEEEGDD 451 (779)
Q Consensus 373 -~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~l~~L~~~sll~~~~~~ 451 (779)
....+.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++.+|.+++ +.++.++++|+++||++....+
T Consensus 357 ~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 357 SSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----EEVEDILQEFVNKSLLFCNRNG 430 (1249)
T ss_dssp TCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTTSCEEEESS
T ss_pred cccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHHHhccceEEecCC
Confidence 11225799999999999999 8999999999999999999999999997764 7889999999999999987333
Q ss_pred ---cEEechHHHHHHHHHHhhh
Q 004021 452 ---HVKMHDMIREMSLWIAWTI 470 (779)
Q Consensus 452 ---~~~mHdlv~~~a~~~~~~~ 470 (779)
+|+|||+||+||+..+.++
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 5999999999999987654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.6e-36 Score=345.73 Aligned_cols=279 Identities=15% Similarity=0.204 Sum_probs=219.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCE-EEEEEe------chHHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDV-VIWAAV------QTFQDDIGKR 227 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~-~~wv~v------~~i~~~i~~~ 227 (779)
+..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++. +++.+|+. ++|+++ ..++..|+..
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345999999999999998643 47999999999999999999999876 66788986 999999 3455555554
Q ss_pred hCCCc---chh-----hhhcchhhHHHHHHHhh---CCCcceeehhhcccccc--ccCCCcEEEEEeCchhhhhhcC-Cc
Q 004021 228 IGFSE---DKK-----WKEKSLQDKAVDISSIL---SPKKFRIDLTELGVPLQ--MLNAGFKIVLKTRSAGVCDQMD-SK 293 (779)
Q Consensus 228 l~~~~---~~~-----~~~~~~~~~~~~l~~~L---~~kr~~~~ld~l~~~~~--~~~~gs~IivTTR~~~va~~~~-~~ 293 (779)
++... ... ....+.++....+++.| .++|+++++||+..... ...+||+||||||++.++..+. ..
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~ 285 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHS
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCe
Confidence 32110 000 01123445566777766 78999999999876421 2348999999999999987554 44
Q ss_pred eeEcc------CCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCC-ChhHHHHHHHHHh
Q 004021 294 NLEVY------SLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQK-KVGDRERAIEKMR 366 (779)
Q Consensus 294 ~~~l~------~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~-~~~~w~~~~~~l~ 366 (779)
.|.++ +|+.+|||+||.+..... ..++..+| |+|+||||+++|+.|+.+. +..+|...
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred EEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence 67777 999999999999984321 12334444 9999999999999999863 67788652
Q ss_pred cccCcCCCchHHHHHHHHHHHhcCCccch-hhhhhhccccCCCcccChHHHHHHHHHcCCCcchhhHHHHHHHHHHcccc
Q 004021 367 TSASTFSGMEENVFLRLKFSYDSLSMDKL-RSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADFDRGCEFINDLLHACLL 445 (779)
Q Consensus 367 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~l~~L~~~sll 445 (779)
....+..+|.+||+.||+ +. |.||++||+||+++.|+++.++.+|+++|. +.+..+|++|+++||+
T Consensus 351 --------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe----edAe~~L~eLvdRSLL 417 (1221)
T 1vt4_I 351 --------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK----SDVMVVVNKLHKYSLV 417 (1221)
T ss_dssp --------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS----HHHHHHHHHHHTSSSS
T ss_pred --------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH----HHHHHHHHHHHhhCCE
Confidence 125899999999999999 78 999999999999999999999999999872 5688999999999999
Q ss_pred ccc-CCCcEEechHHHHHH
Q 004021 446 EEE-GDDHVKMHDMIREMS 463 (779)
Q Consensus 446 ~~~-~~~~~~mHdlv~~~a 463 (779)
+.. ...+|+|||++++++
T Consensus 418 q~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 418 EKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SBCSSSSEEBCCCHHHHHH
T ss_pred EEeCCCCEEEehHHHHHHh
Confidence 986 467899999999855
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.6e-34 Score=327.16 Aligned_cols=301 Identities=16% Similarity=0.266 Sum_probs=235.7
Q ss_pred cccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccc-cCCC-CEEEEEEe-----chHHHHH--
Q 004021 154 EQTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ-QHNF-DVVIWAAV-----QTFQDDI-- 224 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~-~~~F-~~~~wv~v-----~~i~~~i-- 224 (779)
.+.||||+.++++|.++|....+..++|+|+||||+||||||++++++. .+ ..+| ++++|+++ ..+...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 3679999999999999998655578999999999999999999999886 44 5678 58999999 2233333
Q ss_pred -HHHhCCCcc-hhhhhcchhhHHHHHHHhhCC--Ccceeehhhcccc--ccccCCCcEEEEEeCchhhhhhcCCceeEc-
Q 004021 225 -GKRIGFSED-KKWKEKSLQDKAVDISSILSP--KKFRIDLTELGVP--LQMLNAGFKIVLKTRSAGVCDQMDSKNLEV- 297 (779)
Q Consensus 225 -~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~--kr~~~~ld~l~~~--~~~~~~gs~IivTTR~~~va~~~~~~~~~l- 297 (779)
+..++.... ......+.+.....+...+.+ +++++++||+... +....+|++||||||+..++..++...+++
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~ 281 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVP 281 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEEE
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEee
Confidence 334442100 011234556677778888876 7899999998543 233468999999999999887655344554
Q ss_pred --cCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHhcCCCChhHHHHHHHHHhcccCc----
Q 004021 298 --YSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAMKSQKKVGDRERAIEKMRTSAST---- 371 (779)
Q Consensus 298 --~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~---- 371 (779)
++|+.+||++||...++... ....+.+.+|+++|+|+||||..+|+.++.+ ..+|...++.+......
T Consensus 282 ~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~ 355 (591)
T 1z6t_A 282 VESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRK 355 (591)
T ss_dssp CCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSC
T ss_pred cCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhh
Confidence 58999999999999987532 2234678999999999999999999999874 34799888888765322
Q ss_pred -CCCchHHHHHHHHHHHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCcchhhHHHHHHHHHHccccccc--
Q 004021 372 -FSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMADFDRGCEFINDLLHACLLEEE-- 448 (779)
Q Consensus 372 -~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~l~~L~~~sll~~~-- 448 (779)
.......+..++..||+.||+ +.|.||++||+||+++.|+.+.+..+|.+++ +.+..++++|+++||++..
T Consensus 356 ~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-----~~~~~~l~~L~~~~Ll~~~~~ 429 (591)
T 1z6t_A 356 SSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET-----EEVEDILQEFVNKSLLFCDRN 429 (591)
T ss_dssp CCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTTSSEEEEE
T ss_pred ccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH-----HHHHHHHHHHHhCcCeEEecC
Confidence 112235899999999999999 8999999999999999999999999997653 5678899999999999865
Q ss_pred -CCCcEEechHHHHHHHHHH
Q 004021 449 -GDDHVKMHDMIREMSLWIA 467 (779)
Q Consensus 449 -~~~~~~mHdlv~~~a~~~~ 467 (779)
...+|+||+++|++++...
T Consensus 430 ~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TTEEEEECCHHHHHHHHHHT
T ss_pred CCccEEEEcHHHHHHHHhhh
Confidence 2347999999999999874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3e-21 Score=203.96 Aligned_cols=222 Identities=20% Similarity=0.294 Sum_probs=182.2
Q ss_pred CCccEEEcccccccccccCcc------cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccC
Q 004021 495 EGAKRISLMANEIESLSEIPT------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEY 568 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~ 568 (779)
..++.|++++|.+..+|.... .|+|++| .+..+|..++++++|++|+|++|.++.+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 578899999999888876432 3899999 888999999999999999999999999999999999999999999
Q ss_pred CcCCCCCchhhhcC---------CccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccccc
Q 004021 569 THYLSIIPHQLISG---------FLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQK 639 (779)
Q Consensus 569 ~~~l~~lp~~~i~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 639 (779)
|..++.+|.. ++. +++|++|++++|.+.. .+..++.+++|+.|+++.|...
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------------lp~~l~~l~~L~~L~L~~N~l~---- 219 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS---------------LPASIANLQNLKSLKIRNSPLS---- 219 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC---------------CCGGGGGCTTCCEEEEESSCCC----
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc---------------chHhhcCCCCCCEEEccCCCCC----
Confidence 8788888886 554 9999999999998764 4456788999999999966433
Q ss_pred CCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCC
Q 004021 640 FFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFP 719 (779)
Q Consensus 640 ~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~ 719 (779)
.+ ++.++.+++|+.|+|++|+..+.++. .++.+++|+.|+|++|+.++.+|..+..++
T Consensus 220 -----~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~----------------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 220 -----AL-GPAIHHLPKLEELDLRGCTALRNYPP----------------IFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp -----CC-CGGGGGCTTCCEEECTTCTTCCBCCC----------------CTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred -----cC-chhhccCCCCCEEECcCCcchhhhHH----------------HhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 32 34678899999999999988776654 678899999999999999999999999999
Q ss_pred CccEEeeeCCCCCCCCCCCCCCccc-ccEEEechHhhhhhCcc
Q 004021 720 KLKKIGVYGCPKLKKLPINSSSAKE-RRVVIEGLKEWWEELQW 761 (779)
Q Consensus 720 ~L~~L~l~~c~~L~~lP~~~~~~~~-~~l~i~~~~~~~~~l~w 761 (779)
+|++|++++|+.++.+|..+...+. +.+.+. ..+.+.+.+
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~--~~~~~~l~~ 318 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVP--PHLQAQLDQ 318 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECC--GGGSCC---
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCC--HHHHHHHhh
Confidence 9999999999999999988766544 444433 444444433
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.7e-19 Score=190.53 Aligned_cols=201 Identities=21% Similarity=0.291 Sum_probs=166.4
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
.|+|++| .+..+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|++++|.
T Consensus 85 ~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 85 ALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELSIRACP 161 (328)
T ss_dssp EEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEEEEEET
T ss_pred EEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEECCCCC
Confidence 4899999 9999999999999999999999999999999999999999999999 67899997 9999999999999987
Q ss_pred CCC-cccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccc
Q 004021 596 SEG-VTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICV 674 (779)
Q Consensus 596 ~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 674 (779)
..+ +|..+.. ......++.+++|+.|+++.|... .+ +.+++.+++|+.|+|++|... .++.
T Consensus 162 ~~~~~p~~~~~------~~~~~~~~~l~~L~~L~L~~n~l~---------~l-p~~l~~l~~L~~L~L~~N~l~-~l~~- 223 (328)
T 4fcg_A 162 ELTELPEPLAS------TDASGEHQGLVNLQSLRLEWTGIR---------SL-PASIANLQNLKSLKIRNSPLS-ALGP- 223 (328)
T ss_dssp TCCCCCSCSEE------EC-CCCEEESTTCCEEEEEEECCC---------CC-CGGGGGCTTCCEEEEESSCCC-CCCG-
T ss_pred CccccChhHhh------ccchhhhccCCCCCEEECcCCCcC---------cc-hHhhcCCCCCCEEEccCCCCC-cCch-
Confidence 654 1211110 011123556999999999977543 22 456888999999999997643 3433
Q ss_pred ccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCccc-ccEEEech
Q 004021 675 DKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKE-RRVVIEGL 752 (779)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~-~~l~i~~~ 752 (779)
.++.+++|+.|++++|+....+|..++.+++|++|++++|+.+..+|..+...+. +.+.+.+|
T Consensus 224 ---------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 224 ---------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp ---------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred ---------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 5678999999999999888999999999999999999999999999987765544 89999876
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=9.8e-18 Score=182.03 Aligned_cols=252 Identities=17% Similarity=0.141 Sum_probs=122.8
Q ss_pred cccCCccEEEcccccccccccCc-----c--ccccccccccccc-chhhcccccCceeeecCCcccccchh-hccCccCc
Q 004021 492 KEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLR 562 (779)
Q Consensus 492 ~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~ 562 (779)
..+++++.|++.+|.+..++... . .|+|++| .+..+ |..|+++++|++|++++|.++.+|.. ++++++|+
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 34456666666666655544311 1 2666666 55555 33456666666666666666666655 36666666
Q ss_pred EeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCC--CchhhHHhhcCCCCCCceeEEeeccccc--c
Q 004021 563 YLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCD--DAEPLMRELLGLKRLNVLSWSFRSSLAV--Q 638 (779)
Q Consensus 563 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~ 638 (779)
+|++++| .+..+++..++++++|++|++++|.+..++......+.. .....+..+...++|+.|+++.+....+ .
T Consensus 145 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 145 TLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp EEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred EEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence 6666666 345554444566666666666666555422111100000 0000001111222333333333322211 1
Q ss_pred cCCCCCcc--------cCcccccccCcceEEeccccccceeccccc-----------ccCcccchhhccCCCCCCCCccE
Q 004021 639 KFFKYPKL--------DLTWLVFVQNLKELEIIVCTEMEEIICVDK-----------LRDVSDISEIIGSEHNFFTQLES 699 (779)
Q Consensus 639 ~~~~L~~L--------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~~ 699 (779)
.+++|+.| .++++..+++|+.|+|++|......+.... ...+..++ .....+++|+.
T Consensus 224 ~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~l~~L~~ 299 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN----LYGQPIPTLKV 299 (390)
T ss_dssp CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE----CSSSCCTTCCE
T ss_pred ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC----cccCCCCCCCE
Confidence 12233333 223455566666666666543222221000 00001111 23455677777
Q ss_pred EEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 700 LGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 700 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
|+++++ .+..++.....+++|++|++++|+ +..+|.. ....++.+.+.++
T Consensus 300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~L~~L~l~~N 349 (390)
T 3o6n_A 300 LDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHN 349 (390)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSS
T ss_pred EECCCC-cceecCccccccCcCCEEECCCCc-cceeCch-hhccCCEEEcCCC
Confidence 777764 566666666667777777777764 6666632 2234477777653
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1e-17 Score=192.21 Aligned_cols=263 Identities=16% Similarity=0.152 Sum_probs=150.5
Q ss_pred cCcccccCcc--ccccCCccEEEcccccccccccCc-----c--cccccccccccccch-hhcccccCceeeecCCcccc
Q 004021 481 AGVKLTEAPK--VKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRG 550 (779)
Q Consensus 481 ~~~~~~~~~~--~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~ 550 (779)
.+..+..+|. +..++.++.|++++|.+..++... . .|+|++| .+..+|+ .|+++++|++|+|++|.++.
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSS 137 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCC
Confidence 3333444443 345678888888888887765421 1 3888888 7777744 46888888888888888888
Q ss_pred cchh-hccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccC--CCchhhHHhhcCCCCCCce
Q 004021 551 LPQE-LKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLC--DDAEPLMRELLGLKRLNVL 627 (779)
Q Consensus 551 lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~~L 627 (779)
+|.. |+++++|++|++++| .+..+|+..++++++|++|++++|.+..++......+. +.....+..+....+|+.|
T Consensus 138 l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L 216 (597)
T 3oja_B 138 LPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 216 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEE
T ss_pred CCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhhee
Confidence 8876 488888888888888 56666665588888888888888877764322111000 0000011122233344444
Q ss_pred eEEeeccccc--ccCCCCCcc--------cCcccccccCcceEEeccccccceeccccc-----------ccCcccchhh
Q 004021 628 SWSFRSSLAV--QKFFKYPKL--------DLTWLVFVQNLKELEIIVCTEMEEIICVDK-----------LRDVSDISEI 686 (779)
Q Consensus 628 ~l~~~~~~~~--~~~~~L~~L--------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-----------~~~~~~~~~~ 686 (779)
+++.|....+ ...++|+.| .++++..+++|+.|+|++|.....++.... ...+..++
T Consensus 217 ~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-- 294 (597)
T 3oja_B 217 DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-- 294 (597)
T ss_dssp ECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE--
T ss_pred eccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC--
Confidence 4444433222 111233333 234455566666666666443322221000 00001111
Q ss_pred ccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 687 IGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 687 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
.....+++|+.|+|+++ .+..+|..+..+++|+.|++++|+ +..+|... ...++.+.+.++
T Consensus 295 --~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~L~~L~l~~N 355 (597)
T 3oja_B 295 --LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST-HHTLKNLTLSHN 355 (597)
T ss_dssp --CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT-TCCCSEEECCSS
T ss_pred --cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcChhh-cCCCCEEEeeCC
Confidence 23455777777777774 556666666677778888887764 66666332 234577777653
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=1.5e-16 Score=168.48 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=155.5
Q ss_pred CCccEEEcccccccccccC-----cc--ccccccccccccc-chhhcccccCceeeecCCcccccchhhccCccCcEeec
Q 004021 495 EGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNL 566 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l 566 (779)
..++.|++++|.+..++.. +. .|+|++| .+..+ |..|+++++|++|++++|.++.+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 4677777777777666542 11 3777777 66665 6677777777777777777777776654 67777777
Q ss_pred cCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccc--cCCCCC
Q 004021 567 EYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQ--KFFKYP 644 (779)
Q Consensus 567 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~--~~~~L~ 644 (779)
++| .+..++...+.++++|++|++++|.+.. ....+..+..+++|+.|+++.+....++ ..++|+
T Consensus 129 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~ 195 (330)
T 1xku_A 129 HEN-EITKVRKSVFNGLNQMIVVELGTNPLKS------------SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195 (330)
T ss_dssp CSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG------------GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCS
T ss_pred CCC-cccccCHhHhcCCccccEEECCCCcCCc------------cCcChhhccCCCCcCEEECCCCccccCCccccccCC
Confidence 777 5666666557777788888777776642 1234456777888888888877665442 124555
Q ss_pred cc----------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC
Q 004021 645 KL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN 714 (779)
Q Consensus 645 ~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 714 (779)
.| .+..+..+++|+.|+|++|.. ..++. ..+..+++|+.|+++++ .+..+|..
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~---------------~~~~~l~~L~~L~L~~N-~l~~lp~~ 258 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-SAVDN---------------GSLANTPHLRELHLNNN-KLVKVPGG 258 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCC-CEECT---------------TTGGGSTTCCEEECCSS-CCSSCCTT
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-ceeCh---------------hhccCCCCCCEEECCCC-cCccCChh
Confidence 55 345677888999999988654 44433 35678899999999985 67888888
Q ss_pred CCCCCCccEEeeeCCCCCCCCCCCCCC--------cccccEEEechH
Q 004021 715 PLHFPKLKKIGVYGCPKLKKLPINSSS--------AKERRVVIEGLK 753 (779)
Q Consensus 715 ~~~l~~L~~L~l~~c~~L~~lP~~~~~--------~~~~~l~i~~~~ 753 (779)
+..+++|++|++++| .++.+|..... .....+.+.+.+
T Consensus 259 l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 259 LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 889999999999987 48888754321 223566666543
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1e-16 Score=164.46 Aligned_cols=193 Identities=22% Similarity=0.271 Sum_probs=155.6
Q ss_pred CccEEEcccccccccccCcc----cccccccccccccch-hhcccccCceeeecCCcccccchh-hccCccCcEeeccCC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYT 569 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~ 569 (779)
..+.++++++.+..+|...+ .|+|++| .+..+|. .|.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 46789999998888876432 5999999 8888865 799999999999999999999876 488999999999999
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCc
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLT 649 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~ 649 (779)
.+..+|...+.++++|++|++++|.+.. ..+..++.+++|+.|+++.| +++.+...
T Consensus 96 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~Ls~n---------~l~~~~~~ 151 (270)
T 2o6q_A 96 -KLQALPIGVFDQLVNLAELRLDRNQLKS--------------LPPRVFDSLTKLTYLSLGYN---------ELQSLPKG 151 (270)
T ss_dssp -CCCCCCTTTTTTCSSCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCSS---------CCCCCCTT
T ss_pred -cCCcCCHhHcccccCCCEEECCCCccCe--------------eCHHHhCcCcCCCEEECCCC---------cCCccCHh
Confidence 6788888768899999999999998875 23345778899999999854 34444445
Q ss_pred ccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC-CCCCCCccEEeeeC
Q 004021 650 WLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN-PLHFPKLKKIGVYG 728 (779)
Q Consensus 650 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~ 728 (779)
.+..+++|+.|+|++|. +..++. ..+..+++|+.|+++++ .++.++.. +..+++|+.|++++
T Consensus 152 ~~~~l~~L~~L~L~~n~-l~~~~~---------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQ-LKRVPE---------------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCT---------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred HccCCcccceeEecCCc-CcEeCh---------------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 57788999999999864 444433 35678899999999985 67777764 56789999999998
Q ss_pred CC
Q 004021 729 CP 730 (779)
Q Consensus 729 c~ 730 (779)
+|
T Consensus 215 N~ 216 (270)
T 2o6q_A 215 NP 216 (270)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=1.1e-17 Score=175.60 Aligned_cols=223 Identities=13% Similarity=0.146 Sum_probs=138.6
Q ss_pred CccEEEcccccccc---cccCcc------cccccc-ccccc-ccchhhcccccCceeeecCCccc-ccchhhccCccCcE
Q 004021 496 GAKRISLMANEIES---LSEIPT------LLSLRR-NDSLT-ELPSRISSLVSLHHLDLSLTHIR-GLPQELKALEKLRY 563 (779)
Q Consensus 496 ~lr~l~l~~~~~~~---l~~~~~------lL~L~~-~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~~~~L~~L~~ 563 (779)
.++.|++++|.+.. +|.... .|+|++ | .+. .+|..|+++++|++|++++|.++ .+|..+.++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 56677777776653 333211 367774 5 444 56777777777777777777776 56777777777777
Q ss_pred eeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCC-CCCceeEEeeccc-----cc
Q 004021 564 LNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLK-RLNVLSWSFRSSL-----AV 637 (779)
Q Consensus 564 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~-----~~ 637 (779)
|++++|.....+|.. ++++++|++|++++|.+.+ ..+..+..++ +|+.|+++.|... .+
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~--------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG--------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE--------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC--------------cCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 777777433356665 7777777777777776652 2344555555 6666666655432 11
Q ss_pred ccCCCCCcc----------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCC
Q 004021 638 QKFFKYPKL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPD 707 (779)
Q Consensus 638 ~~~~~L~~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 707 (779)
..++ |+.| .+..+..+++|+.|+|++|.....+ ..+..+++|++|+++++.-
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-----------------GKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-----------------GGCCCCTTCCEEECCSSCC
T ss_pred hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec-----------------CcccccCCCCEEECcCCcc
Confidence 2222 4433 3345667788888888876543222 1355678888888887543
Q ss_pred CccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 708 LKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 708 l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
...+|..+..+++|++|++++|+--..+|.......++.+.+.++
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence 336677777888888888888764446776533333455555444
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=7.6e-17 Score=166.86 Aligned_cols=196 Identities=19% Similarity=0.144 Sum_probs=161.5
Q ss_pred ccccCCccEEEcccccccccccCcc----ccccccccccccc-chhhcccccCceeeecCCcccccchhhccCccCcEee
Q 004021 491 VKEWEGAKRISLMANEIESLSEIPT----LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLN 565 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~ 565 (779)
...+.+++.+++.++.+..+|...+ .|+|++| .+..+ |..|.++++|++|+|++|.++.+|.. +.+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 3455688999999999988876433 5999999 88877 67899999999999999999998875 8999999999
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCc
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPK 645 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~ 645 (779)
+++| .+..+|.. +..+++|++|++++|.+.. ..+..+..+++|+.|+++.| +++.
T Consensus 84 Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~--------------l~~~~~~~l~~L~~L~L~~N---------~l~~ 138 (290)
T 1p9a_G 84 LSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS--------------LPLGALRGLGELQELYLKGN---------ELKT 138 (290)
T ss_dssp CCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC--------------CCSSTTTTCTTCCEEECTTS---------CCCC
T ss_pred CCCC-cCCcCchh-hccCCCCCEEECCCCcCcc--------------cCHHHHcCCCCCCEEECCCC---------CCCc
Confidence 9999 68899986 8999999999999998875 22345778899999999854 3444
Q ss_pred ccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEe
Q 004021 646 LDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIG 725 (779)
Q Consensus 646 L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 725 (779)
+.+..+..+++|+.|+|++|. +..++. ..+..+++|+.|+|++ +.++.+|.....+++|+.|+
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~-l~~l~~---------------~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNN-LTELPA---------------GLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAF 201 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSC-CSCCCT---------------TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEE
T ss_pred cChhhcccccCCCEEECCCCc-CCccCH---------------HHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEE
Confidence 445557788999999999864 455544 3567899999999998 57889999888899999999
Q ss_pred eeCCC
Q 004021 726 VYGCP 730 (779)
Q Consensus 726 l~~c~ 730 (779)
++++|
T Consensus 202 L~~Np 206 (290)
T 1p9a_G 202 LHGNP 206 (290)
T ss_dssp CCSCC
T ss_pred eCCCC
Confidence 99876
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=1.8e-16 Score=167.84 Aligned_cols=221 Identities=20% Similarity=0.242 Sum_probs=171.2
Q ss_pred CCccEEEcccccccccccCcc----cccccccccccccch-hhcccccCceeeecCCccccc-chhhccCccCcEeeccC
Q 004021 495 EGAKRISLMANEIESLSEIPT----LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEY 568 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~ 568 (779)
..++.+++.++.+..+|.... .|+|++| .++.+|. .|+++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 368899999999888876432 5999999 8998865 799999999999999999987 78899999999999999
Q ss_pred CcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccc-------cccCC
Q 004021 569 THYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLA-------VQKFF 641 (779)
Q Consensus 569 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-------~~~~~ 641 (779)
| .++.+|.. +. ++|++|++++|.+.. .....+..+++|+.|+++.+.... +..++
T Consensus 110 n-~l~~l~~~-~~--~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 110 N-QLKELPEK-MP--KTLQELRVHENEITK--------------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp S-CCSBCCSS-CC--TTCCEEECCSSCCCB--------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred C-cCCccChh-hc--ccccEEECCCCcccc--------------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 9 68899986 43 799999999998874 345568889999999999876532 34456
Q ss_pred CCCcccCcc--c-----ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccC-
Q 004021 642 KYPKLDLTW--L-----VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYP- 713 (779)
Q Consensus 642 ~L~~L~~~~--l-----~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 713 (779)
+|+.|.+.. + ...++|+.|++++|. +..++. ..+..+++|+.|+++++ .+..++.
T Consensus 172 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-l~~~~~---------------~~~~~l~~L~~L~Ls~n-~l~~~~~~ 234 (330)
T 1xku_A 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNK-ITKVDA---------------ASLKGLNNLAKLGLSFN-SISAVDNG 234 (330)
T ss_dssp TCCEEECCSSCCCSCCSSCCTTCSEEECTTSC-CCEECT---------------GGGTTCTTCCEEECCSS-CCCEECTT
T ss_pred CcCEEECCCCccccCCccccccCCEEECCCCc-CCccCH---------------HHhcCCCCCCEEECCCC-cCceeChh
Confidence 666652110 1 112677788887754 333322 36778999999999985 5666655
Q ss_pred CCCCCCCccEEeeeCCCCCCCCCCCCCCcc-cccEEEech
Q 004021 714 NPLHFPKLKKIGVYGCPKLKKLPINSSSAK-ERRVVIEGL 752 (779)
Q Consensus 714 ~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~-~~~l~i~~~ 752 (779)
.+..+++|++|++++| .+..+|..+...+ ++.+.+.++
T Consensus 235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence 5678999999999998 5889998776544 488888765
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=1.8e-16 Score=167.85 Aligned_cols=224 Identities=18% Similarity=0.175 Sum_probs=147.3
Q ss_pred CCccEEEcccccccccccC-----cc--ccccccccccccc-chhhcccccCceeeecCCcccccchhhccCccCcEeec
Q 004021 495 EGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNL 566 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l 566 (779)
+.++.|++++|.+..++.. +. .|+|++| .+..+ |..|+++++|++|++++|.++.+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 4677777777777665431 11 3777777 66665 6667777777777777777777776655 67777777
Q ss_pred cCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccc--cCCCCC
Q 004021 567 EYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQ--KFFKYP 644 (779)
Q Consensus 567 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~--~~~~L~ 644 (779)
++| .+..+|...+.++++|++|++++|.+... ...+..+..+ +|+.|+++.+....++ ..++|+
T Consensus 131 ~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~ 196 (332)
T 2ft3_A 131 HDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS------------GFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLN 196 (332)
T ss_dssp CSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG------------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCS
T ss_pred CCC-ccCccCHhHhCCCccCCEEECCCCccccC------------CCCcccccCC-ccCEEECcCCCCCccCccccCCCC
Confidence 777 56666665567777777777777766420 1233445555 6777777766554432 123444
Q ss_pred cc----------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC
Q 004021 645 KL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN 714 (779)
Q Consensus 645 ~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 714 (779)
.| .+..+..+++|+.|+|++|.. ..++. ..+..+++|+.|+++++ .+..+|..
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~---------------~~~~~l~~L~~L~L~~N-~l~~lp~~ 259 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIEN---------------GSLSFLPTLRELHLDNN-KLSRVPAG 259 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC-CCCCT---------------TGGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-CcCCh---------------hHhhCCCCCCEEECCCC-cCeecChh
Confidence 44 334577788888888888643 33332 25678899999999984 67888888
Q ss_pred CCCCCCccEEeeeCCCCCCCCCCCCC--------CcccccEEEechH
Q 004021 715 PLHFPKLKKIGVYGCPKLKKLPINSS--------SAKERRVVIEGLK 753 (779)
Q Consensus 715 ~~~l~~L~~L~l~~c~~L~~lP~~~~--------~~~~~~l~i~~~~ 753 (779)
+..+++|++|++++| .++.+|.... ...++.+.+.+++
T Consensus 260 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 888999999999986 4777775322 1223667776654
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.8e-16 Score=175.47 Aligned_cols=214 Identities=21% Similarity=0.194 Sum_probs=139.8
Q ss_pred CCccEEEcccccccccccCc-----c--ccccccccccccc-chhhcccccCceeeecCCcccccchh-hccCccCcEee
Q 004021 495 EGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLN 565 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~ 565 (779)
..++.|++++|.+..++... . .|+|++| .+..+ |..|.++++|++|+|++|.++.+|.. +.++++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 46777777777776653321 1 3777777 66665 35667777777777777777776654 66677777777
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCc
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPK 645 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~ 645 (779)
+++| .+..+|...+.++++|++|++++|.... ......+..+++|+.|+++.|....
T Consensus 154 L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~-------------~i~~~~~~~l~~L~~L~L~~n~l~~--------- 210 (452)
T 3zyi_A 154 LRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE-------------YISEGAFEGLFNLKYLNLGMCNIKD--------- 210 (452)
T ss_dssp CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC-------------EECTTTTTTCTTCCEEECTTSCCSS---------
T ss_pred CCCC-CcceeCHhHHhcCCcccEEeCCCCCCcc-------------ccChhhccCCCCCCEEECCCCcccc---------
Confidence 7777 4666666556777777777777644332 1223346677777777777554332
Q ss_pred ccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc-CCCCCCCCccEE
Q 004021 646 LDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY-PNPLHFPKLKKI 724 (779)
Q Consensus 646 L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L 724 (779)
.+.+..+++|+.|+|++|.. ..++. ..+..+++|+.|+++++ .+..++ ..+..+++|+.|
T Consensus 211 --~~~~~~l~~L~~L~Ls~N~l-~~~~~---------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 211 --MPNLTPLVGLEELEMSGNHF-PEIRP---------------GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp --CCCCTTCTTCCEEECTTSCC-SEECG---------------GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred --cccccccccccEEECcCCcC-cccCc---------------ccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEE
Confidence 23456778889999988654 34433 36778889999999884 555554 456678999999
Q ss_pred eeeCCCCCCCCCCCC-CC-cccccEEEech
Q 004021 725 GVYGCPKLKKLPINS-SS-AKERRVVIEGL 752 (779)
Q Consensus 725 ~l~~c~~L~~lP~~~-~~-~~~~~l~i~~~ 752 (779)
++++| ++..+|... .. ..++.+.+.++
T Consensus 272 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 272 NLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred ECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 99887 677887643 22 23477777643
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=2e-16 Score=168.77 Aligned_cols=115 Identities=25% Similarity=0.348 Sum_probs=89.8
Q ss_pred EEcCcccccCccccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccch
Q 004021 479 VRAGVKLTEAPKVKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ 553 (779)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 553 (779)
...+..+..++.+..++++++|++++|.+..++.... .|++++| .+..+| .+.++++|++|++++|.++.+|.
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISP 127 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCCCGG
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccCchh
Confidence 3344555566667778889999999888877765322 3888888 888876 58888999999999998888876
Q ss_pred hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCC
Q 004021 554 ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 554 ~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
+.++++|++|++++|..+..++. +..+++|++|++.+|.+..
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~ 169 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD 169 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred -hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC
Confidence 88888999999988866666655 7888888888888887765
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=1.2e-16 Score=170.44 Aligned_cols=247 Identities=16% Similarity=0.138 Sum_probs=140.3
Q ss_pred cCcccccCccccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccchhh
Q 004021 481 AGVKLTEAPKVKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQEL 555 (779)
Q Consensus 481 ~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~ 555 (779)
.+..+..++.+..+.++++|++.+|.+..++.... .|++++| .+..+|. +.++++|++|++++|.....+..+
T Consensus 74 ~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~ 151 (347)
T 4fmz_A 74 NGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSPL 151 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred cCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccch
Confidence 34445555556677788888888887777654322 3788888 7777765 777888888888887444434447
Q ss_pred ccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC-------ccCCCchhhHHhhcCCCCCCcee
Q 004021 556 KALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN-------VLCDDAEPLMRELLGLKRLNVLS 628 (779)
Q Consensus 556 ~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~L~~L~~L~ 628 (779)
.++++|++|++++| .+..++. +..+++|++|++++|.+..++. +.. .+.++.......+..+++|+.|+
T Consensus 152 ~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 227 (347)
T 4fmz_A 152 SNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLK 227 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred hhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEE
Confidence 77888888888877 4566665 6777888888888777665321 000 00000001111145556666666
Q ss_pred EEeeccccc---ccCCCCCcc--------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCc
Q 004021 629 WSFRSSLAV---QKFFKYPKL--------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQL 697 (779)
Q Consensus 629 l~~~~~~~~---~~~~~L~~L--------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 697 (779)
++.|....+ ..+++|+.| ..+.+..+++|+.|++++|.. ..+ ..+..+++|
T Consensus 228 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~-----------------~~~~~l~~L 289 (347)
T 4fmz_A 228 IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI-SDI-----------------SVLNNLSQL 289 (347)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCC-----------------GGGGGCTTC
T ss_pred ccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc-CCC-----------------hhhcCCCCC
Confidence 665544332 233334333 123344555566666655432 221 134566777
Q ss_pred cEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 698 ESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 698 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
+.|++++|.-....+..+..+++|++|++++|+ +..+|.......++.+.+.++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhh
Confidence 777777653322333344567777777777765 555544222223355555443
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.7e-16 Score=164.25 Aligned_cols=197 Identities=16% Similarity=0.144 Sum_probs=111.1
Q ss_pred cEEEcccccccccccCcc----cccccccccccccc-hhhcccccCceeeecCCccccc-chhhccCccCcEeeccCCcC
Q 004021 498 KRISLMANEIESLSEIPT----LLSLRRNDSLTELP-SRISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 498 r~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~ 571 (779)
+.++..++.+..+|.... .|+|++| .+..+| ..|.++++|++|++++|.++.+ |..+.++++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 345555555555443211 3666666 566554 3466667777777777766665 55566677777777776643
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCccc
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWL 651 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l 651 (779)
++.+++..+..+++|++|++++|.+.. ..+..+..+++|+.|+++.|. +..+.+..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~---------l~~~~~~~~ 149 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQE--------------LGPGLFRGLAALQYLYLQDNA---------LQALPDDTF 149 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCC--------------CCTTTTTTCTTCCEEECCSSC---------CCCCCTTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCE--------------ECHhHhhCCcCCCEEECCCCc---------ccccCHhHh
Confidence 555544336666777777777666553 223345566666666666432 223333345
Q ss_pred ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccc-cCCCCCCCCccEEeeeCCC
Q 004021 652 VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSI-YPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 652 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~ 730 (779)
..+++|+.|+|++|. +..++. ..+..+++|+.|+++++ .+..+ +..+..+++|+.|++++|
T Consensus 150 ~~l~~L~~L~l~~n~-l~~~~~---------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n- 211 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNR-ISSVPE---------------RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN- 211 (285)
T ss_dssp TTCTTCCEEECCSSC-CCEECT---------------TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred ccCCCccEEECCCCc-ccccCH---------------HHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-
Confidence 556666666666643 333332 23555666666666663 34433 445556666666666665
Q ss_pred CCCCCC
Q 004021 731 KLKKLP 736 (779)
Q Consensus 731 ~L~~lP 736 (779)
.+..+|
T Consensus 212 ~l~~~~ 217 (285)
T 1ozn_A 212 NLSALP 217 (285)
T ss_dssp CCSCCC
T ss_pred cCCcCC
Confidence 355555
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=2.4e-16 Score=174.53 Aligned_cols=197 Identities=21% Similarity=0.230 Sum_probs=163.4
Q ss_pred ccccCCccEEEcccccccccccCc-----c--cccccccccccccchh-hcccccCceeeecCCcccccch-hhccCccC
Q 004021 491 VKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELPSR-ISSLVSLHHLDLSLTHIRGLPQ-ELKALEKL 561 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L 561 (779)
+..+.+++.|++++|.+..++... . .|+|++| .+..+|.. |.++++|++|+|++|.++.+|. .+.++++|
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 456789999999999998776432 2 3999999 89988664 8899999999999999999876 68999999
Q ss_pred cEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCC
Q 004021 562 RYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFF 641 (779)
Q Consensus 562 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 641 (779)
++|++++|..++.+|.+.+.++++|++|++++|.+..+ ..+..+++|+.|+++.|
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----------------~~~~~l~~L~~L~Ls~N--------- 228 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM----------------PNLTPLVGLEELEMSGN--------- 228 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC----------------CCCTTCTTCCEEECTTS---------
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc----------------ccccccccccEEECcCC---------
Confidence 99999998889999987789999999999999988751 24778899999999844
Q ss_pred CCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC-CCCCCC
Q 004021 642 KYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN-PLHFPK 720 (779)
Q Consensus 642 ~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~ 720 (779)
++..+.+..+..+++|+.|+|++|.. ..++. ..+..+++|+.|+|+++ .+..++.. +..+++
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~---------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQV-SLIER---------------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRY 291 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSCC-CEECT---------------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTT
T ss_pred cCcccCcccccCccCCCEEEeCCCcC-ceECH---------------HHhcCCCCCCEEECCCC-cCCccChHHhccccC
Confidence 45555567788899999999999654 44433 36788999999999984 77777764 457999
Q ss_pred ccEEeeeCCC
Q 004021 721 LKKIGVYGCP 730 (779)
Q Consensus 721 L~~L~l~~c~ 730 (779)
|+.|++++||
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 9999999875
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.1e-16 Score=167.55 Aligned_cols=228 Identities=19% Similarity=0.162 Sum_probs=161.6
Q ss_pred CcccccCccccccCCccEEEcccccccccccCc--c-----ccccccccccccc---chhhcccccCceeeecCCccccc
Q 004021 482 GVKLTEAPKVKEWEGAKRISLMANEIESLSEIP--T-----LLSLRRNDSLTEL---PSRISSLVSLHHLDLSLTHIRGL 551 (779)
Q Consensus 482 ~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~--~-----lL~L~~~~~l~~l---p~~i~~L~~L~~L~L~~~~i~~l 551 (779)
+..+..+|. .....+++|++++|.+..++... . .|+|++| .+..+ |..+..+++|++|++++|.+..+
T Consensus 16 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp SSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEE
T ss_pred CCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccC
Confidence 334455554 22357888899888888776532 1 3888888 77654 67777888888999988888888
Q ss_pred chhhccCccCcEeeccCCcCCCCCch-hhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEE
Q 004021 552 PQELKALEKLRYLNLEYTHYLSIIPH-QLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWS 630 (779)
Q Consensus 552 p~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 630 (779)
|..+.++++|++|++++| .+..++. ..+..+++|++|++++|.+.. ..+..+..+++|+.|+++
T Consensus 94 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV--------------AFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp EEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE--------------CSTTTTTTCTTCCEEECT
T ss_pred hhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc--------------cchhhcccCcCCCEEECC
Confidence 888888888899988888 5666664 337888888888888887653 334456778888888887
Q ss_pred eecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcc
Q 004021 631 FRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKS 710 (779)
Q Consensus 631 ~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 710 (779)
.|.... ...+..+..+++|+.|+|++|.. ..++. ..+..+++|+.|+++++ .+..
T Consensus 159 ~n~l~~--------~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~---------------~~~~~l~~L~~L~L~~N-~l~~ 213 (306)
T 2z66_A 159 GNSFQE--------NFLPDIFTELRNLTFLDLSQCQL-EQLSP---------------TAFNSLSSLQVLNMSHN-NFFS 213 (306)
T ss_dssp TCEEGG--------GEECSCCTTCTTCCEEECTTSCC-CEECT---------------TTTTTCTTCCEEECTTS-CCSB
T ss_pred CCcccc--------ccchhHHhhCcCCCEEECCCCCc-CCcCH---------------HHhcCCCCCCEEECCCC-ccCc
Confidence 554321 01245567788999999998654 44433 36778899999999984 5666
Q ss_pred ccC-CCCCCCCccEEeeeCCCCCCCCCCCCCCc--ccccEEEec
Q 004021 711 IYP-NPLHFPKLKKIGVYGCPKLKKLPINSSSA--KERRVVIEG 751 (779)
Q Consensus 711 l~~-~~~~l~~L~~L~l~~c~~L~~lP~~~~~~--~~~~l~i~~ 751 (779)
++. .+..+++|+.|++++|+--...|..+... .++.+.+.+
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 654 45678999999999986544455544443 346676654
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=3e-17 Score=172.09 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=161.4
Q ss_pred cccccCCccEEEccc-cccc-ccccCc----c--ccccccccccc-ccchhhcccccCceeeecCCccc-ccchhhccCc
Q 004021 490 KVKEWEGAKRISLMA-NEIE-SLSEIP----T--LLSLRRNDSLT-ELPSRISSLVSLHHLDLSLTHIR-GLPQELKALE 559 (779)
Q Consensus 490 ~~~~~~~lr~l~l~~-~~~~-~l~~~~----~--lL~L~~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~~~~L~ 559 (779)
.+..+..+++|++++ |.+. .+|... . .|+|++| .+. .+|..|+++++|++|++++|.++ .+|..+.+++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 456778899999984 7665 344322 2 4899999 777 67989999999999999999988 6888999999
Q ss_pred cCcEeeccCCcCCCCCchhhhcCCc-cCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccc---
Q 004021 560 KLRYLNLEYTHYLSIIPHQLISGFL-KLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSL--- 635 (779)
Q Consensus 560 ~L~~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~--- 635 (779)
+|++|++++|.....+|.. +++++ +|++|++++|.+.+ ..+..+..++ |+.|+++.|...
T Consensus 150 ~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~--------------~~~~~~~~l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG--------------KIPPTFANLN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp TCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE--------------ECCGGGGGCC-CSEEECCSSEEEECC
T ss_pred CCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec--------------cCChHHhCCc-ccEEECcCCcccCcC
Confidence 9999999999433378887 88888 99999999988763 2344455554 777777665543
Q ss_pred --ccccCCCCCcc---------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccC
Q 004021 636 --AVQKFFKYPKL---------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILY 704 (779)
Q Consensus 636 --~~~~~~~L~~L---------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 704 (779)
.+..+++|+.| .++.+..+++|++|+|++|...+.++. .+..+++|+.|++++
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----------------~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ----------------GLTQLKFLHSLNVSF 277 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG----------------GGGGCTTCCEEECCS
T ss_pred CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh----------------HHhcCcCCCEEECcC
Confidence 23445556555 234467789999999999765444443 677899999999999
Q ss_pred CCCCccccCCCCCCCCccEEeeeCCCCCCCCCCC
Q 004021 705 GPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPIN 738 (779)
Q Consensus 705 ~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~ 738 (779)
+.-...+|.. ..+++|+.|++.+++.+...|..
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred CcccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 6443366654 78999999999999988876653
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=172.95 Aligned_cols=213 Identities=19% Similarity=0.219 Sum_probs=127.1
Q ss_pred CCccEEEcccccccccccCc-----c--ccccccccccccc-chhhcccccCceeeecCCcccccch-hhccCccCcEee
Q 004021 495 EGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLN 565 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~ 565 (779)
..++.|++++|.+..++... . .|+|++| .+..+ |..|.++++|++|+|++|.++.+|. .|.++++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 46677777777666554321 1 2677777 66665 3556667777777777777766665 366677777777
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCc
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPK 645 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~ 645 (779)
+++| .+..+|...+.++++|++|++.+|.... ......+..+++|+.|+++.|....+
T Consensus 143 L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~-------------~i~~~~~~~l~~L~~L~L~~n~l~~~-------- 200 (440)
T 3zyj_A 143 LRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS-------------YISEGAFEGLSNLRYLNLAMCNLREI-------- 200 (440)
T ss_dssp CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC-------------EECTTTTTTCSSCCEEECTTSCCSSC--------
T ss_pred CCCC-cccccCHHHhhhCcccCEeCCCCCCCcc-------------eeCcchhhcccccCeecCCCCcCccc--------
Confidence 7776 4566666556667777777776643332 12223466677777777765543322
Q ss_pred ccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccC-CCCCCCCccEE
Q 004021 646 LDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYP-NPLHFPKLKKI 724 (779)
Q Consensus 646 L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L 724 (779)
+.+..+++|+.|+|++|. +..++. ..+..+++|+.|+++++ .+..++. .+..+++|+.|
T Consensus 201 ---~~~~~l~~L~~L~Ls~N~-l~~~~~---------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 201 ---PNLTPLIKLDELDLSGNH-LSAIRP---------------GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp ---CCCTTCSSCCEEECTTSC-CCEECT---------------TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEE
T ss_pred ---cccCCCcccCEEECCCCc-cCccCh---------------hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEE
Confidence 234566777777777753 333433 35666777777777763 4555543 44567777777
Q ss_pred eeeCCCCCCCCCCCC-CC-cccccEEEec
Q 004021 725 GVYGCPKLKKLPINS-SS-AKERRVVIEG 751 (779)
Q Consensus 725 ~l~~c~~L~~lP~~~-~~-~~~~~l~i~~ 751 (779)
++++| ++..+|... .. ..++.+.+.+
T Consensus 261 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 261 NLAHN-NLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp ECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred ECCCC-CCCccChhHhccccCCCEEEcCC
Confidence 77775 466666543 21 2335565553
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=4.1e-16 Score=172.01 Aligned_cols=212 Identities=18% Similarity=0.186 Sum_probs=167.8
Q ss_pred ccEEEcccccccccccCcc----ccccccccccccc-chhhcccccCceeeecCCcccccc-hhhccCccCcEeeccCCc
Q 004021 497 AKRISLMANEIESLSEIPT----LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLP-QELKALEKLRYLNLEYTH 570 (779)
Q Consensus 497 lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~l~~~~ 570 (779)
.+.++..++.+..+|.... .|+|++| .+..+ |..|.++++|++|+|++|.++.++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN- 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-
Confidence 4578888888888876533 6999999 88887 578999999999999999999876 56999999999999999
Q ss_pred CCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcc
Q 004021 571 YLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTW 650 (779)
Q Consensus 571 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~ 650 (779)
.++.+|.+.+..+++|++|++++|.+.. .....+..+++|+.|+++. ...+..+....
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~--------------~~~~~~~~l~~L~~L~l~~--------~~~l~~i~~~~ 180 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIES--------------IPSYAFNRIPSLRRLDLGE--------LKRLSYISEGA 180 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCE--------------ECTTTTTTCTTCCEEECCC--------CTTCCEECTTT
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccc--------------cCHHHhhhCcccCEeCCCC--------CCCcceeCcch
Confidence 7889998778999999999999998874 2334577899999999874 23455555556
Q ss_pred cccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccc-cCCCCCCCCccEEeeeCC
Q 004021 651 LVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSI-YPNPLHFPKLKKIGVYGC 729 (779)
Q Consensus 651 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c 729 (779)
+..+++|+.|+|++|.. ..+ ..+..+++|+.|+|+++ .+..+ +..+..+++|+.|++++|
T Consensus 181 ~~~l~~L~~L~L~~n~l-~~~-----------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNL-REI-----------------PNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp TTTCSSCCEEECTTSCC-SSC-----------------CCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred hhcccccCeecCCCCcC-ccc-----------------cccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC
Confidence 78899999999999753 333 24678999999999995 66666 557778999999999987
Q ss_pred CCCCCCCC-CCCC-cccccEEEech
Q 004021 730 PKLKKLPI-NSSS-AKERRVVIEGL 752 (779)
Q Consensus 730 ~~L~~lP~-~~~~-~~~~~l~i~~~ 752 (779)
. +..++. .+.. .+++.+.++++
T Consensus 242 ~-l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 242 Q-IQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp C-CCEECTTSSTTCTTCCEEECTTS
T ss_pred c-eeEEChhhhcCCCCCCEEECCCC
Confidence 4 666554 3333 33477777654
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=3.4e-16 Score=161.96 Aligned_cols=206 Identities=19% Similarity=0.200 Sum_probs=163.4
Q ss_pred cccccCccccccCCccEEEcccccccccccCc-----c--ccccccccccccc-chhhcccccCceeeecCCc-cccc-c
Q 004021 483 VKLTEAPKVKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTH-IRGL-P 552 (779)
Q Consensus 483 ~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~-i~~l-p 552 (779)
..+..+|. .....+++|++++|.+..++... . .|+|++| .+..+ |..|.++++|++|++++|. ++.+ |
T Consensus 21 ~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 21 QGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 34455553 23468999999999998876431 2 4999999 88887 7889999999999999997 8888 6
Q ss_pred hhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEee
Q 004021 553 QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFR 632 (779)
Q Consensus 553 ~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 632 (779)
..+.++++|++|++++| .+..+++..+.++++|++|++++|.+.. .....++.+++|+.|+++.|
T Consensus 99 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA--------------LPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCSS
T ss_pred HHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc--------------cCHhHhccCCCccEEECCCC
Confidence 77999999999999999 5677765558999999999999998875 22344778999999999855
Q ss_pred cccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc
Q 004021 633 SSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY 712 (779)
Q Consensus 633 ~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (779)
+++.+....+..+++|+.|++++|.. ..+.. ..+..+++|+.|+++++ .+..++
T Consensus 164 ---------~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~---------------~~~~~l~~L~~L~l~~n-~l~~~~ 217 (285)
T 1ozn_A 164 ---------RISSVPERAFRGLHSLDRLLLHQNRV-AHVHP---------------HAFRDLGRLMTLYLFAN-NLSALP 217 (285)
T ss_dssp ---------CCCEECTTTTTTCTTCCEEECCSSCC-CEECT---------------TTTTTCTTCCEEECCSS-CCSCCC
T ss_pred ---------cccccCHHHhcCccccCEEECCCCcc-cccCH---------------hHccCcccccEeeCCCC-cCCcCC
Confidence 34445455678899999999999764 44433 36788999999999985 666666
Q ss_pred C-CCCCCCCccEEeeeCCCC
Q 004021 713 P-NPLHFPKLKKIGVYGCPK 731 (779)
Q Consensus 713 ~-~~~~l~~L~~L~l~~c~~ 731 (779)
. .+..+++|+.|++++++-
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCE
T ss_pred HHHcccCcccCEEeccCCCc
Confidence 4 366899999999999863
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=4.8e-16 Score=173.56 Aligned_cols=237 Identities=17% Similarity=0.195 Sum_probs=166.8
Q ss_pred cCcccccCccccccCCccEEEcccccccccccC-----cc--ccccccccccccc-chhhcccccCceeeecCCcccccc
Q 004021 481 AGVKLTEAPKVKEWEGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLP 552 (779)
Q Consensus 481 ~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp 552 (779)
.+..+..+|.. -...++.|++++|.+..++.. +. .|+|++| .+..+ |..|+++++|++|+|++|.++.+|
T Consensus 19 ~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 19 HRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 34445555542 235889999999998877532 11 3899999 88876 778999999999999999999988
Q ss_pred hh-hccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEe
Q 004021 553 QE-LKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSF 631 (779)
Q Consensus 553 ~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 631 (779)
.. |.++++|++|++++| .+..+++..+.++++|++|++++|.+.. ..+..+..+++|+.|+++.
T Consensus 97 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY--------------ISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp TTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE--------------ECTTSSTTCTTCCEEEEES
T ss_pred cccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce--------------eChhhccCCCCCCEEECCC
Confidence 65 688999999999999 5566655458899999999999987764 3344567788888888887
Q ss_pred eccccc-----ccCCCCCcc----------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCC
Q 004021 632 RSSLAV-----QKFFKYPKL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQ 696 (779)
Q Consensus 632 ~~~~~~-----~~~~~L~~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (779)
|....+ ..+++|+.| ....+..+++|+.|++++|+.+..++. ......+
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------~~~~~~~ 225 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP----------------NCLYGLN 225 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT----------------TTTTTCC
T ss_pred CcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc----------------ccccCcc
Confidence 665432 345555555 223456677888888888777666654 2233458
Q ss_pred ccEEEccCCCCCccccC-CCCCCCCccEEeeeCCCCCCCCCCC-CCC-cccccEEEech
Q 004021 697 LESLGILYGPDLKSIYP-NPLHFPKLKKIGVYGCPKLKKLPIN-SSS-AKERRVVIEGL 752 (779)
Q Consensus 697 L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~L~~lP~~-~~~-~~~~~l~i~~~ 752 (779)
|+.|+++++ .++.++. .+..+++|+.|++++|+ +..+|.. +.. ..++.+.+.++
T Consensus 226 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred ccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence 888888874 5666663 45678889999998875 6666543 222 23477777654
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.4e-16 Score=166.69 Aligned_cols=210 Identities=20% Similarity=0.227 Sum_probs=164.4
Q ss_pred cCcccccCcc--ccccCCccEEEccccccccccc-------Ccc--cccccccccccccchhhcccccCceeeecCCccc
Q 004021 481 AGVKLTEAPK--VKEWEGAKRISLMANEIESLSE-------IPT--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIR 549 (779)
Q Consensus 481 ~~~~~~~~~~--~~~~~~lr~l~l~~~~~~~l~~-------~~~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~ 549 (779)
.+..+..++. +..+.+++.|++++|.+..+.. ... .|+|++| .+..+|..+.++++|++|++++|.++
T Consensus 36 ~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~ 114 (306)
T 2z66_A 36 ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLK 114 (306)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCccc
Confidence 3444555554 4678899999999998875521 112 4999999 99999999999999999999999999
Q ss_pred ccch--hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCce
Q 004021 550 GLPQ--ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVL 627 (779)
Q Consensus 550 ~lp~--~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 627 (779)
.+|. .+.++++|++|++++| .+..+++..+.++++|++|++++|.+.. ...+..+..+++|+.|
T Consensus 115 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 115 QMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQE-------------NFLPDIFTELRNLTFL 180 (306)
T ss_dssp SSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGG-------------GEECSCCTTCTTCCEE
T ss_pred ccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcccc-------------ccchhHHhhCcCCCEE
Confidence 9875 7999999999999999 4555555458999999999999998763 2355668889999999
Q ss_pred eEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCC
Q 004021 628 SWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPD 707 (779)
Q Consensus 628 ~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 707 (779)
+++.| ++..+.+.++..+++|+.|+|++|.. ..++. ..+..+++|+.|+++++.-
T Consensus 181 ~Ls~n---------~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~---------------~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 181 DLSQC---------QLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDT---------------FPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTS---------CCCEECTTTTTTCTTCCEEECTTSCC-SBCCS---------------GGGTTCTTCCEEECTTSCC
T ss_pred ECCCC---------CcCCcCHHHhcCCCCCCEEECCCCcc-CccCh---------------hhccCcccCCEeECCCCCC
Confidence 99844 44555566788899999999999754 33333 2567899999999999654
Q ss_pred CccccCCCCCCC-CccEEeeeCCC
Q 004021 708 LKSIYPNPLHFP-KLKKIGVYGCP 730 (779)
Q Consensus 708 l~~l~~~~~~l~-~L~~L~l~~c~ 730 (779)
....+..+..+| +|++|++++|+
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cccCHHHHHhhhccCCEEEccCCC
Confidence 444555667775 99999999886
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=174.33 Aligned_cols=223 Identities=20% Similarity=0.194 Sum_probs=174.3
Q ss_pred ccEEEcccccccccccCcc----ccccccccccccc-chhhcccccCceeeecCCccccc-chhhccCccCcEeeccCCc
Q 004021 497 AKRISLMANEIESLSEIPT----LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTH 570 (779)
Q Consensus 497 lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~ 570 (779)
.+.+..+++.+..+|...+ .|+|++| .+..+ |..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 3567888888888776433 6999999 89887 67899999999999999999987 778999999999999999
Q ss_pred CCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccc-----cccCCCCCc
Q 004021 571 YLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLA-----VQKFFKYPK 645 (779)
Q Consensus 571 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-----~~~~~~L~~ 645 (779)
.+..+|.+.++++++|++|++++|.+.. ..+..+..+++|+.|+++.|.... +..+++|+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVI--------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCE--------------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred cCCccCcccccCCCCCCEEECCCCcccc--------------CChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 6889998768999999999999998874 345567889999999999876543 345566666
Q ss_pred cc----------CcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCC
Q 004021 646 LD----------LTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNP 715 (779)
Q Consensus 646 L~----------~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 715 (779)
|. ...+..+++|+.|+|++|.. ..++. ..+..+++|+.|++++++.+..++...
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i-~~~~~---------------~~~~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRD---------------YSFKRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCC-CEECT---------------TCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcC-cEeCh---------------hhcccCcccceeeCCCCccccccCccc
Confidence 61 12366778888888888543 33433 367788999999999988888888877
Q ss_pred CCCCCccEEeeeCCCCCCCCCCC-C-CCcccccEEEech
Q 004021 716 LHFPKLKKIGVYGCPKLKKLPIN-S-SSAKERRVVIEGL 752 (779)
Q Consensus 716 ~~l~~L~~L~l~~c~~L~~lP~~-~-~~~~~~~l~i~~~ 752 (779)
...++|+.|++++| ++..+|.. + ....++.+.+.++
T Consensus 221 ~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 221 LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS
T ss_pred ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCC
Confidence 77789999999987 57788732 2 2234477777654
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=171.13 Aligned_cols=242 Identities=20% Similarity=0.198 Sum_probs=143.9
Q ss_pred cCcccccCccccccCCccEEEcccccccccccC-----cc--ccccccccccccc-chhhcccccCceeeecCCcccccc
Q 004021 481 AGVKLTEAPKVKEWEGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLP 552 (779)
Q Consensus 481 ~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp 552 (779)
.+..+..+|. .-.+.+++|++++|.+..++.. +. .|+|++| .+..+ |..|+++++|++|++++|.++.+|
T Consensus 39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 3444555554 2235788999998888877652 11 3888888 88876 556888899999999999888888
Q ss_pred hh-hccCccCcEeeccCCcCCCCCch-hhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEE
Q 004021 553 QE-LKALEKLRYLNLEYTHYLSIIPH-QLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWS 630 (779)
Q Consensus 553 ~~-~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 630 (779)
.. ++++++|++|++++| .++.+|. ..++++++|++|++++|.... ...+..++.+++|+.|+++
T Consensus 117 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------------~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT-------------KIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp HHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------EECTTTTTTCCEEEEEEEE
T ss_pred HhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc-------------ccCHHHccCCCCCCEEECC
Confidence 76 788899999999988 6778887 447888999999998874221 2234557778888888888
Q ss_pred eeccccc-----ccCCCCCcccC----------cccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCC
Q 004021 631 FRSSLAV-----QKFFKYPKLDL----------TWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFT 695 (779)
Q Consensus 631 ~~~~~~~-----~~~~~L~~L~~----------~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (779)
.|..... ..+++|+.|.+ ..+..+++|+.|++++|......+. .+ ......+
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l-----~~~~~~~ 249 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS--------EL-----STGETNS 249 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------CCC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc--------cc-----ccccccc
Confidence 7654322 22223333311 1122355566666655433221110 00 0111223
Q ss_pred CccEEEccCCCC----CccccCCCCCCCCccEEeeeCCCCCCCCCCCC-CC-cccccEEEech
Q 004021 696 QLESLGILYGPD----LKSIYPNPLHFPKLKKIGVYGCPKLKKLPINS-SS-AKERRVVIEGL 752 (779)
Q Consensus 696 ~L~~L~l~~~~~----l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~-~~-~~~~~l~i~~~ 752 (779)
.++.+++.++.- +..+|..+..+++|++|++++| +++.+|... .. ..++.+.+.++
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence 333333333210 0112333445677777777776 466777653 22 23366666643
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=1.5e-16 Score=188.10 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=47.2
Q ss_pred cccccccccc-ccchhhcccccCceeeecCCccc-ccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 517 LSLRRNDSLT-ELPSRISSLVSLHHLDLSLTHIR-GLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 517 L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
|++++| .+. .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.....+|.. ++.+++|++|++++|
T Consensus 447 L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 447 LKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNN 524 (768)
T ss_dssp EECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS
T ss_pred EECCCC-cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCC
Confidence 444444 333 33444444444444444444443 23444444444444444444322234443 444444444444444
Q ss_pred cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecc
Q 004021 595 GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSS 634 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 634 (779)
.+.+ ..+..++.+++|+.|+++.|..
T Consensus 525 ~l~~--------------~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 525 SFSG--------------NIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCEE--------------ECCGGGGGCTTCCEEECCSSEE
T ss_pred cccC--------------cCCHHHcCCCCCCEEECCCCcc
Confidence 4332 3445566666666666665543
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=4.5e-16 Score=168.86 Aligned_cols=241 Identities=17% Similarity=0.161 Sum_probs=155.6
Q ss_pred ccCCccEEEcccccccccccCc-----c--cccccccccccccc-hhhcccccCceeeecCCcccccch-hhccCccCcE
Q 004021 493 EWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELP-SRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRY 563 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~ 563 (779)
.+.+++++++.++.+..+|... . .|+|++| .+..+| ..|+++++|++|++++|.++.+|+ .++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4578999999999999888642 2 4999999 888875 489999999999999999999865 4899999999
Q ss_pred eeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccc--ccCC
Q 004021 564 LNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAV--QKFF 641 (779)
Q Consensus 564 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~~~~ 641 (779)
|++++| .++.+|.+.++++++|++|++++|.+..+ .+..++.+++|+.|+++.|....+ ..++
T Consensus 122 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 186 (390)
T 3o6n_A 122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI--------------EDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186 (390)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC--------------CTTTTSSCTTCCEEECCSSCCSBCCGGGCT
T ss_pred EECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCcc--------------ChhhccCCCCCCEEECCCCcCCcccccccc
Confidence 999999 68899998679999999999999988752 233456666777777766554332 3344
Q ss_pred CCCccc-----Cccccc---------------------ccCcceEEeccccccceecccccccCcc-------cchhhcc
Q 004021 642 KYPKLD-----LTWLVF---------------------VQNLKELEIIVCTEMEEIICVDKLRDVS-------DISEIIG 688 (779)
Q Consensus 642 ~L~~L~-----~~~l~~---------------------l~~L~~L~L~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 688 (779)
+|+.|. +..+.. .++|+.|++++|.... ++......... .+....+
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcCh
Confidence 444431 111122 2455666665543221 11100000000 0000011
Q ss_pred CCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCc-ccccEEEech
Q 004021 689 SEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSA-KERRVVIEGL 752 (779)
Q Consensus 689 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~-~~~~l~i~~~ 752 (779)
..+..+++|+.|++++ +.+..++.....+|+|++|++++| .+..+|..+... .++.+.+.++
T Consensus 266 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 266 HPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp GGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred hHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 3455566677777766 355666665566777777777766 466666543322 2355665544
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.66 E-value=4.4e-16 Score=179.70 Aligned_cols=237 Identities=12% Similarity=0.130 Sum_probs=149.9
Q ss_pred cCcccccCcc---ccccCCccEEEccccccc-ccccCcc-----cccccccccccccchhhccccc-CceeeecCCcccc
Q 004021 481 AGVKLTEAPK---VKEWEGAKRISLMANEIE-SLSEIPT-----LLSLRRNDSLTELPSRISSLVS-LHHLDLSLTHIRG 550 (779)
Q Consensus 481 ~~~~~~~~~~---~~~~~~lr~l~l~~~~~~-~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~-L~~L~L~~~~i~~ 550 (779)
.+..+..+|. +..+.+++.|++++|.+. .+|.... .|+|++| .+..+|..++++++ |++|++++|.++.
T Consensus 313 ~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY 391 (636)
T ss_dssp CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSS
T ss_pred CCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcc
Confidence 3334445554 456667777777777776 5652211 2777777 66677777777777 7777777777777
Q ss_pred cchhhccCc--cCcEeeccCCcCCCCCchhhhc-------CCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCC
Q 004021 551 LPQELKALE--KLRYLNLEYTHYLSIIPHQLIS-------GFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGL 621 (779)
Q Consensus 551 lp~~~~~L~--~L~~L~l~~~~~l~~lp~~~i~-------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 621 (779)
+|..+..+. +|++|++++|.....+|.. +. .+.+|++|++++|.+..+| ...+..+
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp--------------~~~~~~l 456 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFP--------------KELFSTG 456 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCC--------------THHHHTT
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCC--------------HHHHccC
Confidence 776666544 6777777777443444443 55 5667777777777665422 1223456
Q ss_pred CCCCceeEEeeccccccc------------CCCCCcc---------cCcccc--cccCcceEEeccccccceeccccccc
Q 004021 622 KRLNVLSWSFRSSLAVQK------------FFKYPKL---------DLTWLV--FVQNLKELEIIVCTEMEEIICVDKLR 678 (779)
Q Consensus 622 ~~L~~L~l~~~~~~~~~~------------~~~L~~L---------~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~ 678 (779)
++|+.|+++.|....++. +++|+.| .+..+. .+++|+.|+|++|.... ++.
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~----- 530 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT----- 530 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC-----
T ss_pred CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cCh-----
Confidence 777777777665543311 1144444 123344 67788888888765433 433
Q ss_pred CcccchhhccCCCCCCCCccEEEccC------CCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 679 DVSDISEIIGSEHNFFTQLESLGILY------GPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
.+..+++|+.|+|++ +.-...+|..+..+++|++|++++|. ++.+|..+. ..++.+.++++
T Consensus 531 -----------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N 597 (636)
T 4eco_A 531 -----------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDN 597 (636)
T ss_dssp -----------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSC
T ss_pred -----------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh-CcCCEEECcCC
Confidence 556788888888854 33355677777788888888888875 588887655 45577777765
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.1e-15 Score=179.72 Aligned_cols=235 Identities=13% Similarity=0.115 Sum_probs=135.7
Q ss_pred CccEEEccccccccccc--Cc-c-----cccccccccccccchhhcccccCceeeecCCcccccchhhccCcc-CcEeec
Q 004021 496 GAKRISLMANEIESLSE--IP-T-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEK-LRYLNL 566 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~--~~-~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~-L~~L~l 566 (779)
+++.|++++|.+..+|. .. . .|+|++| .+..+| .|+++++|++|+|++|.+..+|..+.++++ |++|++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEEC
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEEC
Confidence 55666666665555554 11 1 2556666 555555 555666666666666655556655666655 666666
Q ss_pred cCCcCCCCCchhhhcCCcc--CcEeeeccccCCCcccccC---------C----ccCC-CchhhHHh-hcCCCCCCceeE
Q 004021 567 EYTHYLSIIPHQLISGFLK--LEVLRLLECGSEGVTKEEG---------N----VLCD-DAEPLMRE-LLGLKRLNVLSW 629 (779)
Q Consensus 567 ~~~~~l~~lp~~~i~~L~~--L~~L~l~~~~~~~~~~~~~---------~----~~~~-~~~~~~~~-l~~L~~L~~L~l 629 (779)
++| .+..+|.. +..+.. |++|++++|.+.+.+..+. + .+.. .....+.. +..+++|+.|++
T Consensus 627 s~N-~L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 627 SHN-KLKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp CSS-CCCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred cCC-CCCcCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence 665 34455543 444432 5566665555543211111 0 0000 00112222 336777888888
Q ss_pred Eeeccccccc------------CCCCCcc---------cCcccc--cccCcceEEeccccccceecccccccCcccchhh
Q 004021 630 SFRSSLAVQK------------FFKYPKL---------DLTWLV--FVQNLKELEIIVCTEMEEIICVDKLRDVSDISEI 686 (779)
Q Consensus 630 ~~~~~~~~~~------------~~~L~~L---------~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 686 (779)
+.|....++. +++|+.| .+..+. .+++|+.|+|++|.... ++
T Consensus 705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp-------------- 769 (876)
T 4ecn_A 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP-------------- 769 (876)
T ss_dssp CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CC--------------
T ss_pred CCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cc--------------
Confidence 7766543321 1144444 223344 67788888887765433 33
Q ss_pred ccCCCCCCCCccEEEccC------CCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEechH
Q 004021 687 IGSEHNFFTQLESLGILY------GPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGLK 753 (779)
Q Consensus 687 ~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~~ 753 (779)
..+..+++|+.|+|++ +.-...+|..+..+++|+.|++++|. +..+|..+. ..++.+.+++++
T Consensus 770 --~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 770 --TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp --CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-SSSCEEECCSCT
T ss_pred --hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc-CCCCEEECCCCC
Confidence 3566889999999976 33355677778889999999999885 588998765 356888887764
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=168.82 Aligned_cols=213 Identities=19% Similarity=0.173 Sum_probs=158.5
Q ss_pred ccccCCccEEEcccccccccccC-----cc--cccccccccccccchh-hcccccCceeeecCCcccccch--hhccCcc
Q 004021 491 VKEWEGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTELPSR-ISSLVSLHHLDLSLTHIRGLPQ--ELKALEK 560 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~--~~~~L~~ 560 (779)
+..+.+++.|++++|.+..++.. +. .|+|++| .++.+|.. ++++++|++|++++|.++.+|. .+.++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 56778999999999998877542 12 4999999 99999776 8999999999999999999987 6899999
Q ss_pred CcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccc---
Q 004021 561 LRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAV--- 637 (779)
Q Consensus 561 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--- 637 (779)
|++|++++|..+..+++..++++++|++|++++|.+.+ ..+..++.+++|+.|+++.|....+
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 216 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--------------YEPKSLKSIQNVSHLILHMKQHILLLEI 216 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--------------ECTTTTTTCSEEEEEEEECSCSTTHHHH
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc--------------cCHHHHhccccCCeecCCCCccccchhh
Confidence 99999999966777766558999999999999998775 2345566677777777776655332
Q ss_pred --ccCCCCCcccC-------------cccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEc
Q 004021 638 --QKFFKYPKLDL-------------TWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGI 702 (779)
Q Consensus 638 --~~~~~L~~L~~-------------~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 702 (779)
..+++|+.|.+ +.....+.++.++++.+.....-. ..++ ..+..+++|+.|++
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l--------~~l~----~~l~~l~~L~~L~L 284 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--------FQVM----KLLNQISGLLELEF 284 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH--------HHHH----HHHHTCTTCCEEEC
T ss_pred hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch--------hhhH----HHHhcccCCCEEEC
Confidence 22455555511 112235667888887754322110 0111 34678999999999
Q ss_pred cCCCCCccccCCC-CCCCCccEEeeeCCCC
Q 004021 703 LYGPDLKSIYPNP-LHFPKLKKIGVYGCPK 731 (779)
Q Consensus 703 ~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~ 731 (779)
+++ .++.+|... ..+++|++|++++|+-
T Consensus 285 s~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 285 SRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 984 788888875 7899999999999863
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.2e-15 Score=174.95 Aligned_cols=225 Identities=16% Similarity=0.117 Sum_probs=152.9
Q ss_pred cCcccccCc--cccccCCccEEEcccccccccccCc-----c--cccccccccccccchh-hcccccCceeeecCCcccc
Q 004021 481 AGVKLTEAP--KVKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELPSR-ISSLVSLHHLDLSLTHIRG 550 (779)
Q Consensus 481 ~~~~~~~~~--~~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~ 550 (779)
.+..+..++ .+..+.+++.|++++|.+..++... . .|+|++| .+..+|.. |+++++|++|+|++|.++.
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 333444433 4567789999999999998876542 1 4999999 99999876 5899999999999999988
Q ss_pred cch-hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCc-------------------ccccCC-----
Q 004021 551 LPQ-ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGV-------------------TKEEGN----- 605 (779)
Q Consensus 551 lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~-------------------~~~~~~----- 605 (779)
+|+ .|+++++|++|++++| .+..+|. +.+++|++|++++|.+.++ +.....
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L 237 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSN-RLTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 237 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTS-CCSBCCG---GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEE
T ss_pred CChhhhhcCCcCcEEECcCC-CCCCcCh---hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEE
Confidence 765 6999999999999999 5677664 4566666666666554432 111111
Q ss_pred ccCCCchhhHHhhcCCCCCCceeEEeecccc-----cccCCCCCccc---------CcccccccCcceEEecccccccee
Q 004021 606 VLCDDAEPLMRELLGLKRLNVLSWSFRSSLA-----VQKFFKYPKLD---------LTWLVFVQNLKELEIIVCTEMEEI 671 (779)
Q Consensus 606 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-----~~~~~~L~~L~---------~~~l~~l~~L~~L~L~~~~~~~~~ 671 (779)
.+.++....+..+..+++|+.|+++.|.... +..+++|+.|. +..+..+++|+.|+|++|... .+
T Consensus 238 ~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i 316 (597)
T 3oja_B 238 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HV 316 (597)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CC
T ss_pred ECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-cc
Confidence 1111111223556677788888887665532 23455555551 122344667777777775432 33
Q ss_pred cccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCC
Q 004021 672 ICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (779)
+. .+..+++|+.|+|+++ .+..++ ...+++|+.|++++||
T Consensus 317 ~~----------------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 317 ER----------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp GG----------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred Cc----------------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 32 4567899999999995 566664 6689999999999986
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=4.9e-16 Score=179.05 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=144.4
Q ss_pred ccccCccccccCCccEEEcccccccccccC--cc--cccccccccccccchhhcccccCceeeecCCccccc---chhhc
Q 004021 484 KLTEAPKVKEWEGAKRISLMANEIESLSEI--PT--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGL---PQELK 556 (779)
Q Consensus 484 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l---p~~~~ 556 (779)
....++.+..+.+++.|++.+|.+..+|.. +. .|++++|..+..+ .++.+++|++|++++|.++.+ |..+.
T Consensus 296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred cchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 334444455556667777777666655532 11 2555555222222 445666666666666666554 55666
Q ss_pred cCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccc
Q 004021 557 ALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLA 636 (779)
Q Consensus 557 ~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 636 (779)
.+++|++|++++| .+..+|.. +..+++|++|++++|.+.+ ......+..+++|+.|+++.|....
T Consensus 374 ~~~~L~~L~L~~n-~l~~~~~~-~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 374 GTNSLRHLDLSFN-GAIIMSAN-FMGLEELQHLDFQHSTLKR-------------VTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp CCSCCCEEECCSC-SEEEECCC-CTTCTTCCEEECTTSEEES-------------TTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred cCCcccEeECCCC-ccccchhh-ccCCCCCCeeECCCCccCC-------------ccChhhhhccccCCEEECcCCCCCc
Confidence 6666666666666 35556644 6666666666666665553 1111345566666666666554422
Q ss_pred -----cccCCCCCcc-----------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEE
Q 004021 637 -----VQKFFKYPKL-----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESL 700 (779)
Q Consensus 637 -----~~~~~~L~~L-----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 700 (779)
+..+++|+.| .+..+..+++|+.|+|++|... .++. ..+..+++|+.|
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~---------------~~~~~l~~L~~L 502 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISW---------------GVFDTLHRLQLL 502 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECT---------------TTTTTCTTCCEE
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC-ccCh---------------hhhcccccCCEE
Confidence 2334445444 2345677889999999887544 3333 367789999999
Q ss_pred EccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcc--cccEEEec
Q 004021 701 GILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAK--ERRVVIEG 751 (779)
Q Consensus 701 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~--~~~l~i~~ 751 (779)
+++++.-....|..+..+++|+.|++++|. ++.+|..+...+ ++.+.+.+
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCS
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccC
Confidence 999864433346677889999999999885 888998765542 57777765
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.6e-15 Score=155.36 Aligned_cols=192 Identities=20% Similarity=0.241 Sum_probs=154.4
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccch-hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
.++++++ .++.+|..+. .+|++|++++|.++.+|. .|.++++|++|++++| .++.+|.+.+.++++|++|++++|
T Consensus 20 ~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 20 SVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp EEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS
T ss_pred EEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC
Confidence 4889999 8999998775 689999999999999886 6999999999999999 688999886789999999999999
Q ss_pred cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccc
Q 004021 595 GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICV 674 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 674 (779)
.+.. ..+..+..+++|+.|+++.+. ++.+.+..+..+++|++|+|++|. +..++.
T Consensus 96 ~l~~--------------~~~~~~~~l~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~- 150 (270)
T 2o6q_A 96 KLQA--------------LPIGVFDQLVNLAELRLDRNQ---------LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPK- 150 (270)
T ss_dssp CCCC--------------CCTTTTTTCSSCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-
T ss_pred cCCc--------------CCHhHcccccCCCEEECCCCc---------cCeeCHHHhCcCcCCCEEECCCCc-CCccCH-
Confidence 8875 223456788999999998543 444445567889999999999965 444443
Q ss_pred ccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC-CCCCCCccEEeeeCCCCCCCCCCC-CCC-cccccEEEec
Q 004021 675 DKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN-PLHFPKLKKIGVYGCPKLKKLPIN-SSS-AKERRVVIEG 751 (779)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~L~~lP~~-~~~-~~~~~l~i~~ 751 (779)
..+..+++|+.|+++++ .+..++.. +..+++|++|++++| .++.+|.. +.. ..++.+.+.+
T Consensus 151 --------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 151 --------------GVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp --------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred --------------hHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 35778999999999984 67777764 567999999999997 68888875 332 3447888875
Q ss_pred h
Q 004021 752 L 752 (779)
Q Consensus 752 ~ 752 (779)
+
T Consensus 215 N 215 (270)
T 2o6q_A 215 N 215 (270)
T ss_dssp S
T ss_pred C
Confidence 4
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=4.5e-16 Score=159.71 Aligned_cols=104 Identities=23% Similarity=0.321 Sum_probs=53.1
Q ss_pred ccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccchh-hccCccCcEe
Q 004021 491 VKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYL 564 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L 564 (779)
...+.+++.|.+.+|.+..++.... .|+|++| .+..+| .++++++|++|++++|.++.+|.. ++++++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3445677777777666554432211 2555555 444433 445555555555555555554433 3555555555
Q ss_pred eccCCcCCCCCchhhhcCCccCcEeeeccccCC
Q 004021 565 NLEYTHYLSIIPHQLISGFLKLEVLRLLECGSE 597 (779)
Q Consensus 565 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 597 (779)
++++| .+..+|+..++++++|++|++++|.+.
T Consensus 115 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 115 VLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCC-cCCccCHHHhccCCCCCEEECCCCccC
Confidence 55555 344444443455555555555555444
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.64 E-value=8e-16 Score=162.95 Aligned_cols=219 Identities=19% Similarity=0.228 Sum_probs=168.3
Q ss_pred CccEEEcccccccccccCcc----ccccccccccccc-chhhcccccCceeeecCCccccc-chhhccCccCcEeeccCC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYT 569 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~ 569 (779)
.++.++++++.+..+|.... .|+|++| .+..+ |..|+++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 68899999999988876433 5999999 88888 55899999999999999999987 778999999999999999
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccc-------ccCCC
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAV-------QKFFK 642 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~-------~~~~~ 642 (779)
.+..+|.. +. ++|++|++++|.+.. .....+..+++|+.|+++.|..... ..+ +
T Consensus 113 -~l~~l~~~-~~--~~L~~L~l~~n~i~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 113 -HLVEIPPN-LP--SSLVELRIHDNRIRK--------------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp -CCCSCCSS-CC--TTCCEEECCSSCCCC--------------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred -cCCccCcc-cc--ccCCEEECCCCccCc--------------cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 68899986 44 899999999998875 2234478899999999998766421 222 5
Q ss_pred CCcccCc--ccc-----cccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccC-C
Q 004021 643 YPKLDLT--WLV-----FVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYP-N 714 (779)
Q Consensus 643 L~~L~~~--~l~-----~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 714 (779)
|+.|.+. .+. ..++|+.|++++|.. ..++. ..+..+++|+.|+++++ .+..++. .
T Consensus 174 L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i-~~~~~---------------~~l~~l~~L~~L~L~~N-~l~~~~~~~ 236 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKI-QAIEL---------------EDLLRYSKLYRLGLGHN-QIRMIENGS 236 (332)
T ss_dssp CSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC-CCCCT---------------TSSTTCTTCSCCBCCSS-CCCCCCTTG
T ss_pred cCEEECcCCCCCccCccccCCCCEEECCCCcC-CccCH---------------HHhcCCCCCCEEECCCC-cCCcCChhH
Confidence 5555211 011 125788888887543 33322 36778999999999984 6666655 5
Q ss_pred CCCCCCccEEeeeCCCCCCCCCCCCCCcc-cccEEEech
Q 004021 715 PLHFPKLKKIGVYGCPKLKKLPINSSSAK-ERRVVIEGL 752 (779)
Q Consensus 715 ~~~l~~L~~L~l~~c~~L~~lP~~~~~~~-~~~l~i~~~ 752 (779)
+..+++|++|++++| ++..+|..+...+ ++.+.+.++
T Consensus 237 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 237 LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence 678999999999987 5889998765544 488888754
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=1e-15 Score=180.94 Aligned_cols=79 Identities=30% Similarity=0.357 Sum_probs=40.3
Q ss_pred cccccccccc-ccchhhcccccCceeeecCCccc-ccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 517 LSLRRNDSLT-ELPSRISSLVSLHHLDLSLTHIR-GLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 517 L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
|++++| .+. .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.....+|.. ++.+++|++|++++|
T Consensus 399 L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 399 LYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFN 476 (768)
T ss_dssp EECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS
T ss_pred EECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCC
Confidence 555555 433 34555555555555555555544 34555555555555555555333344443 555555555555555
Q ss_pred cCC
Q 004021 595 GSE 597 (779)
Q Consensus 595 ~~~ 597 (779)
.+.
T Consensus 477 ~l~ 479 (768)
T 3rgz_A 477 DLT 479 (768)
T ss_dssp CCC
T ss_pred ccc
Confidence 444
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1e-15 Score=179.93 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=37.4
Q ss_pred CCCCccEEEccCCCCCccccCCCCCCCCccEEeeeC------CCCCCCCCCCCCCcc-cccEEEech
Q 004021 693 FFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYG------CPKLKKLPINSSSAK-ERRVVIEGL 752 (779)
Q Consensus 693 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~L~~lP~~~~~~~-~~~l~i~~~ 752 (779)
.+++|+.|+|+++ .+..+|..+..+++|+.|++++ |.-...+|..+...+ ++.+.+++|
T Consensus 751 ~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 751 TLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 6777777777763 5556766667777777777765 333455666554433 366666654
No 41
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1e-15 Score=153.93 Aligned_cols=193 Identities=15% Similarity=0.158 Sum_probs=140.6
Q ss_pred cccccccccccccch-hhcccccCceeeecCCc-ccccch-hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeec
Q 004021 516 LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTH-IRGLPQ-ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLL 592 (779)
Q Consensus 516 lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~-i~~lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 592 (779)
.|+|++| .++.+|. .|.++++|++|++++|. ++.+|. .|.++++|++|++++|..++.+|+..+.++++|++|+++
T Consensus 35 ~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 35 TLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp EEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred EEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 4777777 7777765 68889999999999996 888876 688999999999998337788887668889999999999
Q ss_pred cccCCCcccccCCccCCCchhhHHhhcCCCCCC---ceeEEeecccccccCCCCCcccCcccccccCcc-eEEecccccc
Q 004021 593 ECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLN---VLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLK-ELEIIVCTEM 668 (779)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~---~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~-~L~L~~~~~~ 668 (779)
+|.+..+| .+..+++|+ .|+++.| +++..+.+..+..+++|+ .|++++|. +
T Consensus 114 ~n~l~~lp----------------~~~~l~~L~~L~~L~l~~N--------~~l~~i~~~~~~~l~~L~~~L~l~~n~-l 168 (239)
T 2xwt_C 114 NTGLKMFP----------------DLTKVYSTDIFFILEITDN--------PYMTSIPVNAFQGLCNETLTLKLYNNG-F 168 (239)
T ss_dssp EECCCSCC----------------CCTTCCBCCSEEEEEEESC--------TTCCEECTTTTTTTBSSEEEEECCSCC-C
T ss_pred CCCCcccc----------------ccccccccccccEEECCCC--------cchhhcCcccccchhcceeEEEcCCCC-C
Confidence 98877521 155566666 8888854 144455455677888899 99998854 4
Q ss_pred ceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC-CCCC-CCccEEeeeCCCCCCCCCCCCCCccccc
Q 004021 669 EEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN-PLHF-PKLKKIGVYGCPKLKKLPINSSSAKERR 746 (779)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l-~~L~~L~l~~c~~L~~lP~~~~~~~~~~ 746 (779)
..++. ..+.. ++|+.|+++++..++.++.. +..+ ++|+.|+++++ .++.+|.. ....++.
T Consensus 169 ~~i~~---------------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~ 230 (239)
T 2xwt_C 169 TSVQG---------------YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKE 230 (239)
T ss_dssp CEECT---------------TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSE
T ss_pred cccCH---------------hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCce
Confidence 45554 23334 78999999886568777653 4567 88999999885 57888876 3334466
Q ss_pred EEEech
Q 004021 747 VVIEGL 752 (779)
Q Consensus 747 l~i~~~ 752 (779)
+.+.++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 666544
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.2e-15 Score=159.44 Aligned_cols=194 Identities=19% Similarity=0.266 Sum_probs=154.6
Q ss_pred ccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEee
Q 004021 491 VKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLN 565 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~ 565 (779)
...+.+++.|++.+|.+..++.... .|+|++| .+..+|. +.++++|++|++++|.++.+| .+.++++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 3456789999999998887765432 3999999 8998887 999999999999999999987 689999999999
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCc
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPK 645 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~ 645 (779)
+++| .+..+|. +..+++|++|++++|.+.. . ..+..+++|+.|+++.|... .
T Consensus 114 l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~---------------~-~~l~~l~~L~~L~l~~n~l~---------~ 165 (308)
T 1h6u_A 114 LTST-QITDVTP--LAGLSNLQVLYLDLNQITN---------------I-SPLAGLTNLQYLSIGNAQVS---------D 165 (308)
T ss_dssp CTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC---------------C-GGGGGCTTCCEEECCSSCCC---------C
T ss_pred CCCC-CCCCchh--hcCCCCCCEEECCCCccCc---------------C-ccccCCCCccEEEccCCcCC---------C
Confidence 9999 6788876 8999999999999998775 1 12778899999999865433 2
Q ss_pred ccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEe
Q 004021 646 LDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIG 725 (779)
Q Consensus 646 L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 725 (779)
+ +.+..+++|+.|++++|.. ..++ .+..+++|+.|+++++ .+..++. +..+++|+.|+
T Consensus 166 ~--~~l~~l~~L~~L~l~~n~l-~~~~-----------------~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~ 223 (308)
T 1h6u_A 166 L--TPLANLSKLTTLKADDNKI-SDIS-----------------PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVT 223 (308)
T ss_dssp C--GGGTTCTTCCEEECCSSCC-CCCG-----------------GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEE
T ss_pred C--hhhcCCCCCCEEECCCCcc-CcCh-----------------hhcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEE
Confidence 2 2267789999999999654 3331 3567899999999985 6677764 67899999999
Q ss_pred eeCCCCCCCCCCC
Q 004021 726 VYGCPKLKKLPIN 738 (779)
Q Consensus 726 l~~c~~L~~lP~~ 738 (779)
+++|+ +..+|..
T Consensus 224 l~~N~-i~~~~~~ 235 (308)
T 1h6u_A 224 LTNQT-ITNQPVF 235 (308)
T ss_dssp EEEEE-EECCCEE
T ss_pred ccCCe-eecCCee
Confidence 99875 6666643
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=2.5e-15 Score=167.05 Aligned_cols=253 Identities=19% Similarity=0.236 Sum_probs=124.2
Q ss_pred cccccCccccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccchhhcc
Q 004021 483 VKLTEAPKVKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKA 557 (779)
Q Consensus 483 ~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~ 557 (779)
..+..++.+..+.++++|++++|.+..++.... .|++++| .+..+|. ++++++|++|++++|.++.+|. +.+
T Consensus 56 ~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (466)
T 1o6v_A 56 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDIDP-LKN 132 (466)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred CCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCCCCChH-HcC
Confidence 334445555566677777777776666554221 2666666 6666655 6667777777777766666654 666
Q ss_pred CccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC-------ccCCCchhhHHhhcCCCCCCceeEE
Q 004021 558 LEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN-------VLCDDAEPLMRELLGLKRLNVLSWS 630 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~L~~L~~L~l~ 630 (779)
+++|++|++++| .+..+|. ++++++|++|++.+ .....+. +.+ .+.++....+..+..+++|+.|+++
T Consensus 133 l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 133 LTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207 (466)
T ss_dssp CTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred CCCCCEEECCCC-ccCCChh--hccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEec
Confidence 666777776666 3455543 45555555554432 1111000 000 0000000111224444555555555
Q ss_pred eeccccc---ccCCCCCcc--------cCcccccccCcceEEeccccccceecccccc----------cCcccchhhccC
Q 004021 631 FRSSLAV---QKFFKYPKL--------DLTWLVFVQNLKELEIIVCTEMEEIICVDKL----------RDVSDISEIIGS 689 (779)
Q Consensus 631 ~~~~~~~---~~~~~L~~L--------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 689 (779)
.+....+ ..+++|+.| ..+.+..+++|+.|++++|.... ++..... ..+..+ .
T Consensus 208 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~-----~ 281 (466)
T 1o6v_A 208 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNI-----S 281 (466)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCC-----G
T ss_pred CCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-chhhhcCCCCCEEECCCCccCcc-----c
Confidence 4433222 223344433 12334455555555555543221 1110000 000111 1
Q ss_pred CCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 690 EHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 690 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
.+..+++|+.|+++++ .+..++. ...+++|+.|++++|. +..++.......++.+.+.+|
T Consensus 282 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 282 PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS
T ss_pred cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCC
Confidence 2455667777777763 4454443 5567778888887774 555444223334466776655
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=2.1e-15 Score=167.35 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=46.5
Q ss_pred CCCCCCCCccEEEccCCCCCccc-cCCCCCCCCccEEeeeCCCCCCCCCCCC-CC-cccccEEEec
Q 004021 689 SEHNFFTQLESLGILYGPDLKSI-YPNPLHFPKLKKIGVYGCPKLKKLPINS-SS-AKERRVVIEG 751 (779)
Q Consensus 689 ~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~L~~lP~~~-~~-~~~~~l~i~~ 751 (779)
..+..+++|+.|+|+++ .+..+ +..+..+++|++|++++| +++.+|... .. ..++.+.+.+
T Consensus 341 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccC
Confidence 35678899999999985 55655 557788999999999986 588888753 33 3458888874
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.7e-15 Score=155.86 Aligned_cols=194 Identities=22% Similarity=0.181 Sum_probs=97.0
Q ss_pred CCccEEEcccccccccccC-----cc--cccccccccccccch-hhcccccCceeeecCCcccccc-hhhccCccCcEee
Q 004021 495 EGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGLP-QELKALEKLRYLN 565 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~ 565 (779)
..+++|++++|.+..++.. +. .|+|++| .+..+|. .+.++++|++|++++|.++.++ ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 3566666666666554431 11 2556665 5555432 4555666666666666555544 3455566666666
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCc
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPK 645 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~ 645 (779)
+++| .+..++...++++++|++|++++|.+.. ...+..++.+++|+.|+++.|. +..
T Consensus 107 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~l~~~~~~l~~L~~L~Ls~N~---------l~~ 163 (276)
T 2z62_A 107 AVET-NLASLENFPIGHLKTLKELNVAHNLIQS-------------FKLPEYFSNLTNLEHLDLSSNK---------IQS 163 (276)
T ss_dssp CTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC-------------CCCCGGGGGCTTCCEEECCSSC---------CCE
T ss_pred CCCC-CccccCchhcccCCCCCEEECcCCccce-------------ecCchhhccCCCCCEEECCCCC---------CCc
Confidence 6655 3444444225555666666666555442 1123445555566666655332 222
Q ss_pred ccCcccccccCcc----eEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC-CCCCCC
Q 004021 646 LDLTWLVFVQNLK----ELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN-PLHFPK 720 (779)
Q Consensus 646 L~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~ 720 (779)
+.+..+..+++|+ .|++++|. +..++. ......+|+.|+++++ .++.++.. +..+++
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~----------------~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQP----------------GAFKEIRLKELALDTN-QLKSVPDGIFDRLTS 225 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSC-CCEECT----------------TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCS
T ss_pred CCHHHhhhhhhccccceeeecCCCc-ccccCc----------------cccCCCcccEEECCCC-ceeecCHhHhccccc
Confidence 2223333344444 55555533 233322 1122335666666653 35555543 245666
Q ss_pred ccEEeeeCCC
Q 004021 721 LKKIGVYGCP 730 (779)
Q Consensus 721 L~~L~l~~c~ 730 (779)
|+.|++++++
T Consensus 226 L~~L~l~~N~ 235 (276)
T 2z62_A 226 LQKIWLHTNP 235 (276)
T ss_dssp CCEEECCSSC
T ss_pred ccEEEccCCc
Confidence 6666666543
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=6.7e-16 Score=178.15 Aligned_cols=240 Identities=16% Similarity=0.196 Sum_probs=158.4
Q ss_pred ccccCCccEEEccccc-ccc--cccC----------cc--cccccccccccccch--hhcccccCceeeecCCccc-ccc
Q 004021 491 VKEWEGAKRISLMANE-IES--LSEI----------PT--LLSLRRNDSLTELPS--RISSLVSLHHLDLSLTHIR-GLP 552 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~-~~~--l~~~----------~~--lL~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~i~-~lp 552 (779)
+..+.+++.|++++|. +.. +|.. +. .|+|++| .+..+|. .++++++|++|++++|.++ .+|
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 4567788888888887 653 4432 12 4888888 7778888 7888888888888888888 788
Q ss_pred hhhccCccCcEeeccCCcCCCCCchhhhcCCcc-CcEeeeccccCCCcccccCC---------ccCCC--chhhHHhhc-
Q 004021 553 QELKALEKLRYLNLEYTHYLSIIPHQLISGFLK-LEVLRLLECGSEGVTKEEGN---------VLCDD--AEPLMRELL- 619 (779)
Q Consensus 553 ~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~---------~~~~~--~~~~~~~l~- 619 (779)
.++++++|++|++++| .+..+|.. ++++++ |++|++++|.+..+|..+.. .+..+ ....+..+.
T Consensus 348 -~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp -CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred -hhCCCCCCCEEECCCC-ccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 7888888888888888 56688876 788888 88888888877765543221 01110 112233444
Q ss_pred ------CCCCCCceeEEeecccccc-----cCCCCCcccC----------cccc-------cccCcceEEecccccccee
Q 004021 620 ------GLKRLNVLSWSFRSSLAVQ-----KFFKYPKLDL----------TWLV-------FVQNLKELEIIVCTEMEEI 671 (779)
Q Consensus 620 ------~L~~L~~L~l~~~~~~~~~-----~~~~L~~L~~----------~~l~-------~l~~L~~L~L~~~~~~~~~ 671 (779)
.+++|+.|+++.|....++ .+++|+.|.+ ..+. ++++|+.|+|++|... .+
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-cc
Confidence 5667788888776654432 2455555511 1111 1226677777665432 33
Q ss_pred cccccccCcccchhhccCCCC--CCCCccEEEccCCCCCccccCCCCCCCCccEEeeeC------CCCCCCCCCCCCCcc
Q 004021 672 ICVDKLRDVSDISEIIGSEHN--FFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYG------CPKLKKLPINSSSAK 743 (779)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~L~~lP~~~~~~~ 743 (779)
+. .+. .+++|+.|+|+++ .+..+|..+..+++|+.|++++ |.-...+|..+...+
T Consensus 504 p~----------------~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 504 SD----------------DFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp CG----------------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred Ch----------------hhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 32 343 7888999999884 5666888888889999998854 444667887665543
Q ss_pred -cccEEEech
Q 004021 744 -ERRVVIEGL 752 (779)
Q Consensus 744 -~~~l~i~~~ 752 (779)
++.+.++++
T Consensus 567 ~L~~L~Ls~N 576 (636)
T 4eco_A 567 SLTQLQIGSN 576 (636)
T ss_dssp SCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 377777765
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=3.6e-15 Score=165.69 Aligned_cols=256 Identities=19% Similarity=0.216 Sum_probs=122.2
Q ss_pred cccccCccccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccch----
Q 004021 483 VKLTEAPKVKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ---- 553 (779)
Q Consensus 483 ~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~---- 553 (779)
..+..++.+..+.++++|++.+|.+..++.... .|++++| .+..+|. +.++++|++|++++|.+..+|.
T Consensus 78 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l 155 (466)
T 1o6v_A 78 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNTISDISALSGL 155 (466)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTC
T ss_pred CccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCccCCChhhccC
Confidence 334444445556667777777666665543211 2666666 6666654 6666666666666666555442
Q ss_pred ----------------hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCccc-ccCC-----ccCCCc
Q 004021 554 ----------------ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTK-EEGN-----VLCDDA 611 (779)
Q Consensus 554 ----------------~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~-~~~~-----~~~~~~ 611 (779)
.+.++++|++|++++| .+..++. +.++++|++|++++|.+...+. .... .+.++.
T Consensus 156 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232 (466)
T ss_dssp TTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCcccccccccccCCCCEEECCCCC
Confidence 1444555555555555 3444443 5555566666665555444211 0000 011111
Q ss_pred hhhHHhhcCCCCCCceeEEeeccccc---ccCCCCCcc--------cCcccccccCcceEEeccccccceecccccc---
Q 004021 612 EPLMRELLGLKRLNVLSWSFRSSLAV---QKFFKYPKL--------DLTWLVFVQNLKELEIIVCTEMEEIICVDKL--- 677 (779)
Q Consensus 612 ~~~~~~l~~L~~L~~L~l~~~~~~~~---~~~~~L~~L--------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--- 677 (779)
...+..+..+++|+.|+++.|....+ ..+++|+.| ..+.+..+++|+.|++++|.. ..++.....
T Consensus 233 l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L 311 (466)
T 1o6v_A 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISPISNLKNL 311 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC-SCCGGGGGCTTC
T ss_pred cccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcc-cCchhhcCCCCC
Confidence 11122344555555555555443322 233333333 112244455555555555432 111110000
Q ss_pred -------cCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEe
Q 004021 678 -------RDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIE 750 (779)
Q Consensus 678 -------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~ 750 (779)
..+... ..+..+++|+.|+++++ .+..++ ....+++|+.|++++|+ +..++.......++.+.+.
T Consensus 312 ~~L~L~~n~l~~~-----~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 312 TYLTLYFNNISDI-----SPVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLN 383 (466)
T ss_dssp SEEECCSSCCSCC-----GGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECC
T ss_pred CEEECcCCcCCCc-----hhhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEecc
Confidence 000000 12345667777777764 444442 45567778888887775 3333332223334666665
Q ss_pred ch
Q 004021 751 GL 752 (779)
Q Consensus 751 ~~ 752 (779)
++
T Consensus 384 ~n 385 (466)
T 1o6v_A 384 DQ 385 (466)
T ss_dssp CE
T ss_pred CC
Confidence 54
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.62 E-value=2e-15 Score=167.43 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=46.0
Q ss_pred cccccccccccc-chhhcccccCceeeecCCcccc-cchh--hccCccCcEeeccCCcCCCCC-chhhhcCCccCcEeee
Q 004021 517 LSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRG-LPQE--LKALEKLRYLNLEYTHYLSII-PHQLISGFLKLEVLRL 591 (779)
Q Consensus 517 L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~-lp~~--~~~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l 591 (779)
|+|++| .+..+ |..|+++++|++|++++|.++. +|.. ++++++|++|++++|. +..+ |...++++++|++|++
T Consensus 84 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 84 LKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp EECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEEC
T ss_pred EeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeC
Confidence 666666 55544 5556666666666666666554 3333 5666666666666663 3433 3333556666666666
Q ss_pred ccccCCC
Q 004021 592 LECGSEG 598 (779)
Q Consensus 592 ~~~~~~~ 598 (779)
++|.+.+
T Consensus 162 ~~n~l~~ 168 (455)
T 3v47_A 162 TFNKVKS 168 (455)
T ss_dssp TTCCBSC
T ss_pred CCCcccc
Confidence 6665554
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=2.4e-15 Score=174.32 Aligned_cols=60 Identities=8% Similarity=-0.025 Sum_probs=38.3
Q ss_pred CCCCCCCCccEEEccCCCCCccccC-CCCCCCCccEEeeeCCCCCCCCC-CCCCCc--ccccEEEe
Q 004021 689 SEHNFFTQLESLGILYGPDLKSIYP-NPLHFPKLKKIGVYGCPKLKKLP-INSSSA--KERRVVIE 750 (779)
Q Consensus 689 ~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~L~~lP-~~~~~~--~~~~l~i~ 750 (779)
..+.++++|+.|+|++ +.+..++. .+..+++|+.|++++|. +..+| ..+... +++.+.+.
T Consensus 512 ~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp TTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECT
T ss_pred HHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEee
Confidence 3566777777777777 35666654 35567888888888764 55554 334332 34777776
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=2.2e-15 Score=151.40 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=153.7
Q ss_pred cccCccccccCCccEEEcccccccccccCc-----c--ccccccccc-ccccch-hhcccccCceeeecC-Ccccccch-
Q 004021 485 LTEAPKVKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDS-LTELPS-RISSLVSLHHLDLSL-THIRGLPQ- 553 (779)
Q Consensus 485 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~-l~~lp~-~i~~L~~L~~L~L~~-~~i~~lp~- 553 (779)
+..+|. -...++.|++++|.+..++... . .|++++| . ++.+|. .|.++++|++|++++ |.++.+|.
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 455555 3358999999999998887632 1 3999999 6 888865 789999999999998 89999875
Q ss_pred hhccCccCcEeeccCCcCCCCCchhhhcCCccCc---Eeeeccc-cCCCcccccCCccCCCchhhHHhhcCCCCCC-cee
Q 004021 554 ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLE---VLRLLEC-GSEGVTKEEGNVLCDDAEPLMRELLGLKRLN-VLS 628 (779)
Q Consensus 554 ~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~-~L~ 628 (779)
.|.++++|++|++++| .++.+|. ++.+++|+ +|++++| .+.. .....+..+++|+ .|+
T Consensus 100 ~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~--------------i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMTS--------------IPVNAFQGLCNETLTLK 162 (239)
T ss_dssp SEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCCE--------------ECTTTTTTTBSSEEEEE
T ss_pred HhCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCCcchhh--------------cCcccccchhcceeEEE
Confidence 5889999999999999 6788887 78888888 9999998 6664 2233477888999 999
Q ss_pred EEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCC-CCccEEEccCCCC
Q 004021 629 WSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFF-TQLESLGILYGPD 707 (779)
Q Consensus 629 l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 707 (779)
++.|. ++.+....+.. ++|+.|+|++|..+..++. ..+..+ ++|+.|++++ +.
T Consensus 163 l~~n~---------l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~---------------~~~~~l~~~L~~L~l~~-N~ 216 (239)
T 2xwt_C 163 LYNNG---------FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK---------------DAFGGVYSGPSLLDVSQ-TS 216 (239)
T ss_dssp CCSCC---------CCEECTTTTTT-CEEEEEECTTCTTCCEECT---------------TTTTTCSBCCSEEECTT-CC
T ss_pred cCCCC---------CcccCHhhcCC-CCCCEEEcCCCCCcccCCH---------------HHhhccccCCcEEECCC-Cc
Confidence 88554 33332333333 7899999999765677655 466778 9999999998 57
Q ss_pred CccccCCCCCCCCccEEeeeCCCCC
Q 004021 708 LKSIYPNPLHFPKLKKIGVYGCPKL 732 (779)
Q Consensus 708 l~~l~~~~~~l~~L~~L~l~~c~~L 732 (779)
++.+|.. .|++|+.|.+.+|..|
T Consensus 217 l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 217 VTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCCCCCT--TCTTCSEEECTTC---
T ss_pred cccCChh--HhccCceeeccCccCC
Confidence 7877765 7899999999988754
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=2.5e-15 Score=173.09 Aligned_cols=220 Identities=18% Similarity=0.132 Sum_probs=124.0
Q ss_pred CccEEEcccccccccccCc-----c--cccccccccccccchhhcccccCceeeecCCccccc-chhhccCccCcEeecc
Q 004021 496 GAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLE 567 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~ 567 (779)
.++.+++.+|.+..++... . .|++++| .+..+|..++++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 5677777777776665431 1 3777777 7777777777777888888887777765 4467777777888877
Q ss_pred CCcCCCCCchhhhcCCccCcEeeeccccCCCcc---cccCC-------ccCCC--chhhHHhhcCCCCCCceeEEeeccc
Q 004021 568 YTHYLSIIPHQLISGFLKLEVLRLLECGSEGVT---KEEGN-------VLCDD--AEPLMRELLGLKRLNVLSWSFRSSL 635 (779)
Q Consensus 568 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~---~~~~~-------~~~~~--~~~~~~~l~~L~~L~~L~l~~~~~~ 635 (779)
+|.....+|.+.++++++|++|++++|.+.... ..+.+ .+.++ ....+..+..+++|+.|+++.|...
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 775444666655677777777777777665421 00100 00000 0122333444555555555444332
Q ss_pred c------cccCCCCCcc----------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccE
Q 004021 636 A------VQKFFKYPKL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLES 699 (779)
Q Consensus 636 ~------~~~~~~L~~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 699 (779)
. +..+++|+.| .+..+..+++|+.|+|++|...+..+. . ...+..+++|+.
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~-----~~~~~~l~~L~~ 480 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ--------K-----TNSLQTLGRLEI 480 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC--------S-----SCGGGGCTTCCE
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc--------c-----chhhccCCCccE
Confidence 1 2223333333 122344455555555555443221110 0 023556777777
Q ss_pred EEccCCCCCccc-cCCCCCCCCccEEeeeCCC
Q 004021 700 LGILYGPDLKSI-YPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 700 L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~ 730 (779)
|+++++ .+..+ +..+..+++|++|++++|.
T Consensus 481 L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 481 LVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-ccCccChhhhccccCCCEEECCCCc
Confidence 777775 34444 4456677777777777764
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=4.1e-15 Score=152.99 Aligned_cols=208 Identities=20% Similarity=0.233 Sum_probs=159.5
Q ss_pred EEcccccccccccC----cccccccccccccccch-hhcccccCceeeecCCcccccch-hhccCccCcEeeccCCcCCC
Q 004021 500 ISLMANEIESLSEI----PTLLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTHYLS 573 (779)
Q Consensus 500 l~l~~~~~~~l~~~----~~lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~l~ 573 (779)
+...+..+..+|.. ...|+|++| .++.+|. .|.++++|++|++++|.++.+|. .+.++++|++|++++| .+.
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred EEecCCCccccCCCCCCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccC
Confidence 44445555555543 225999999 8998865 89999999999999999999876 6899999999999999 577
Q ss_pred CCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCccc-Ccccc
Q 004021 574 IIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLD-LTWLV 652 (779)
Q Consensus 574 ~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~-~~~l~ 652 (779)
.++...+.++++|++|++.+|.+.. .....++.+++|+.|+++.|. +..+. +..+.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~---------l~~~~l~~~~~ 146 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLAS--------------LENFPIGHLKTLKELNVAHNL---------IQSFKLPEYFS 146 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCC--------------STTCCCTTCTTCCEEECCSSC---------CCCCCCCGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccc--------------cCchhcccCCCCCEEECcCCc---------cceecCchhhc
Confidence 7776558999999999999998775 222247789999999998554 33332 56788
Q ss_pred cccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCcc----EEEccCCCCCccccCCCCCCCCccEEeeeC
Q 004021 653 FVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLE----SLGILYGPDLKSIYPNPLHFPKLKKIGVYG 728 (779)
Q Consensus 653 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 728 (779)
.+++|+.|++++|.. ..++. ..+..+++|+ .|++++ +.+..++......++|++|++++
T Consensus 147 ~l~~L~~L~Ls~N~l-~~~~~---------------~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 147 NLTNLEHLDLSSNKI-QSIYC---------------TDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp GCTTCCEEECCSSCC-CEECG---------------GGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS
T ss_pred cCCCCCEEECCCCCC-CcCCH---------------HHhhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCC
Confidence 899999999999654 44433 2344455555 899998 57888888777778999999999
Q ss_pred CCCCCCCCCCC-C-CcccccEEEe
Q 004021 729 CPKLKKLPINS-S-SAKERRVVIE 750 (779)
Q Consensus 729 c~~L~~lP~~~-~-~~~~~~l~i~ 750 (779)
|. ++.+|... . ..+++.+.+.
T Consensus 210 n~-l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 210 NQ-LKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp SC-CSCCCTTTTTTCCSCCEEECC
T ss_pred Cc-eeecCHhHhcccccccEEEcc
Confidence 75 88888754 3 2344888887
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=1.1e-14 Score=165.69 Aligned_cols=236 Identities=21% Similarity=0.150 Sum_probs=159.6
Q ss_pred EEEEcCcccccCccccccCCccEEEcccccccccccCcc---cccccccccccccchhhcccccCceeeecCCcccccch
Q 004021 477 FLVRAGVKLTEAPKVKEWEGAKRISLMANEIESLSEIPT---LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ 553 (779)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~---lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 553 (779)
.+...+..+..+|.... ++++.|++++|.+..+|.... .|+|++| .++.+|. .+++|++|++++|.++.+|.
T Consensus 44 ~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPALPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp EEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCCCCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCCCCC
T ss_pred EEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCCcCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCCCCC
Confidence 34445555666665322 789999999999998887433 4999999 8999987 78999999999999999987
Q ss_pred hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC----ccCCCchhhHHhhcCCCCCCceeE
Q 004021 554 ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN----VLCDDAEPLMRELLGLKRLNVLSW 629 (779)
Q Consensus 554 ~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~~L~~L~l 629 (779)
.+++|++|++++| .++.+|.. +++|++|++++|.+..++....+ .+.++....+. ..+++|+.|++
T Consensus 119 ---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~L 188 (622)
T 3g06_A 119 ---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP--MLPSGLQELSV 188 (622)
T ss_dssp ---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEEC
T ss_pred ---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc--ccCCCCcEEEC
Confidence 6788999999999 67888874 48899999999988775432222 11111111111 34577888888
Q ss_pred Eeecccccc-cCCCCCcccC-----ccc-ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEc
Q 004021 630 SFRSSLAVQ-KFFKYPKLDL-----TWL-VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGI 702 (779)
Q Consensus 630 ~~~~~~~~~-~~~~L~~L~~-----~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 702 (779)
+.|....++ .+++|+.|.+ ..+ ..+++|+.|+|++|. +..++ ..+++|+.|++
T Consensus 189 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~~lp-------------------~~l~~L~~L~L 248 (622)
T 3g06_A 189 SDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLP-------------------VLPSELKELMV 248 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSCCC-------------------CCCTTCCEEEC
T ss_pred CCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCc-cCcCC-------------------CCCCcCcEEEC
Confidence 877665542 2344555411 001 123677788887753 33232 34578888888
Q ss_pred cCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCccc-ccEEEech
Q 004021 703 LYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKE-RRVVIEGL 752 (779)
Q Consensus 703 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~-~~l~i~~~ 752 (779)
+++ .++.+|. .+++|+.|++++| ++..+|..+...+. +.+.+.++
T Consensus 249 s~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 249 SGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred CCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence 874 6777766 5688888888887 57788876554433 77777655
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=1.6e-14 Score=172.49 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=70.4
Q ss_pred EcCcccccCccccccCCccEEEcccccccccccCc-----c--ccccccccccccc-chhhcccccCceeeecCCccccc
Q 004021 480 RAGVKLTEAPKVKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGL 551 (779)
Q Consensus 480 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~l 551 (779)
.....+..+|. ...++++|++++|.+..++... . .|+|++|..+..+ |..|++|++|++|+|++|.+..+
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 34455666666 4567888888888776654221 1 3667666334445 55667777777777777766665
Q ss_pred -chhhccCccCcEeeccCCcCCCCCch-hhhcCCccCcEeeeccccCCC
Q 004021 552 -PQELKALEKLRYLNLEYTHYLSIIPH-QLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 552 -p~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 598 (779)
|..|+++++|++|+|++|.....+|. ..++++++|++|++++|.+.+
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc
Confidence 55666666677777666632222332 225566666666666666554
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=6.2e-15 Score=151.17 Aligned_cols=176 Identities=20% Similarity=0.204 Sum_probs=141.6
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
|++++| .+..++ .+..+++|++|++++|.++.++ .+.++++|++|++++| .++.+|+..++++++|++|++++|.+
T Consensus 46 L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 46 IIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp EECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcC
Confidence 889999 888776 5899999999999999999876 7899999999999999 67888887679999999999999988
Q ss_pred CCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccccc
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDK 676 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 676 (779)
.. ..+..++.+++|+.|+++.|. +..+.+..+..+++|+.|++++|.. ..++.
T Consensus 122 ~~--------------~~~~~~~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~--- 174 (272)
T 3rfs_A 122 QS--------------LPDGVFDKLTNLTYLNLAHNQ---------LQSLPKGVFDKLTNLTELDLSYNQL-QSLPE--- 174 (272)
T ss_dssp CC--------------CCTTTTTTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSCC-CCCCT---
T ss_pred Cc--------------cCHHHhccCCCCCEEECCCCc---------cCccCHHHhccCccCCEEECCCCCc-CccCH---
Confidence 75 233447788999999998553 4444455678899999999999754 44433
Q ss_pred ccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC-CCCCCCccEEeeeCCCCCCCCC
Q 004021 677 LRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN-PLHFPKLKKIGVYGCPKLKKLP 736 (779)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~L~~lP 736 (779)
..+..+++|+.|+++++ .+..++.. +..+++|+.|++++|+-....|
T Consensus 175 ------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 175 ------------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp ------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ------------HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 35678999999999985 56666654 5789999999999986544444
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=4.9e-15 Score=153.24 Aligned_cols=187 Identities=20% Similarity=0.164 Sum_probs=152.5
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccc-hhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLP-QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
++++++ .++.+|..+. .+|++|+|++|.++.++ ..+.++++|++|++++| .++.+|. .+.+++|++|++++|.
T Consensus 15 l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 15 VNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp EECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSC
T ss_pred EECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCCc
Confidence 788998 9999998775 79999999999999874 57999999999999999 6888887 4899999999999998
Q ss_pred CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccc
Q 004021 596 SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVD 675 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 675 (779)
+.. .+..+..+++|+.|+++.| +++.+.+..+..+++|+.|+|++|. +..++.
T Consensus 89 l~~---------------l~~~~~~l~~L~~L~l~~N---------~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~-- 141 (290)
T 1p9a_G 89 LQS---------------LPLLGQTLPALTVLDVSFN---------RLTSLPLGALRGLGELQELYLKGNE-LKTLPP-- 141 (290)
T ss_dssp CSS---------------CCCCTTTCTTCCEEECCSS---------CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCT--
T ss_pred CCc---------------CchhhccCCCCCEEECCCC---------cCcccCHHHHcCCCCCCEEECCCCC-CCccCh--
Confidence 875 3345678899999999854 4455555678889999999999965 444444
Q ss_pred cccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCC-CCCCCccEEeeeCCCCCCCCCCCCCCcc-cccEEEec
Q 004021 676 KLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNP-LHFPKLKKIGVYGCPKLKKLPINSSSAK-ERRVVIEG 751 (779)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~L~~lP~~~~~~~-~~~l~i~~ 751 (779)
..+..+++|+.|++++ +.++.++... ..+++|+.|++++| .++.+|..+.... ++.+.+.+
T Consensus 142 -------------~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 142 -------------GLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp -------------TTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred -------------hhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCC
Confidence 3567899999999998 5788888765 57999999999986 5889998765543 37777764
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=9.4e-16 Score=160.75 Aligned_cols=195 Identities=17% Similarity=0.164 Sum_probs=103.3
Q ss_pred cccccccccc-ccchhh--cccccCceeeecCCcccccchhhccC-----ccCcEeeccCCcCCCCCchhhhcCCccCcE
Q 004021 517 LSLRRNDSLT-ELPSRI--SSLVSLHHLDLSLTHIRGLPQELKAL-----EKLRYLNLEYTHYLSIIPHQLISGFLKLEV 588 (779)
Q Consensus 517 L~L~~~~~l~-~lp~~i--~~L~~L~~L~L~~~~i~~lp~~~~~L-----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 588 (779)
|+|++| .+. .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++| .+..+|+..++++++|++
T Consensus 100 L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 100 LTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCE
T ss_pred EEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCE
Confidence 455555 444 345554 56666666666666666666555555 66666666666 445555333666666666
Q ss_pred eeeccccCCCcccccCCccCCCchhhHHhh--cCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEecccc
Q 004021 589 LRLLECGSEGVTKEEGNVLCDDAEPLMREL--LGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCT 666 (779)
Q Consensus 589 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~ 666 (779)
|++++|.+.+ ....+..+ +.+++|+.|+++.|....++ .+....+..+++|+.|+|++|.
T Consensus 178 L~Ls~N~l~~------------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 178 LDLSDNPELG------------ERGLISALCPLKFPTLQVLALRNAGMETPS------GVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp EECCSCTTCH------------HHHHHHHSCTTSCTTCCEEECTTSCCCCHH------HHHHHHHHTTCCCSEEECTTSC
T ss_pred EECCCCCcCc------------chHHHHHHHhccCCCCCEEECCCCcCcchH------HHHHHHHhcCCCCCEEECCCCc
Confidence 6666665432 01123333 55666666666644322110 1111122355677777777654
Q ss_pred ccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCccccc
Q 004021 667 EMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERR 746 (779)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~ 746 (779)
....++. ..+..+++|+.|++++ +.++.+|.... ++|++|++++| +++.+|.......++.
T Consensus 240 l~~~~~~---------------~~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~ 300 (312)
T 1wwl_A 240 LRDAAGA---------------PSCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGN 300 (312)
T ss_dssp CCSSCCC---------------SCCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEE
T ss_pred CCcccch---------------hhhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCE
Confidence 3332211 1334466777777776 34556665543 67777777665 4666665222222344
Q ss_pred EEEe
Q 004021 747 VVIE 750 (779)
Q Consensus 747 l~i~ 750 (779)
+.+.
T Consensus 301 L~L~ 304 (312)
T 1wwl_A 301 LSLK 304 (312)
T ss_dssp EECT
T ss_pred Eecc
Confidence 4444
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.4e-15 Score=169.42 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=131.2
Q ss_pred cCCccEEEcccccccccccC-----cc--cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeec
Q 004021 494 WEGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNL 566 (779)
Q Consensus 494 ~~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l 566 (779)
+++++.|++++|.+..++.. +. .|+|++| .+..+++ ++++++|++|+|++|.++.+|.. ++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 34788888888887766532 11 3888888 7776654 78888888888888888777642 67888888
Q ss_pred cCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcc
Q 004021 567 EYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKL 646 (779)
Q Consensus 567 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L 646 (779)
++| .+..+|.. .+++|++|++++|.+.+ ..+..++.+++|+.|+++.|. +...
T Consensus 107 ~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~Ls~N~---------l~~~ 159 (487)
T 3oja_A 107 ANN-NISRVSCS---RGQGKKNIYLANNKITM--------------LRDLDEGCRSRVQYLDLKLNE---------IDTV 159 (487)
T ss_dssp CSS-CCCCEEEC---CCSSCEEEECCSSCCCS--------------GGGBCGGGGSSEEEEECTTSC---------CCEE
T ss_pred cCC-cCCCCCcc---ccCCCCEEECCCCCCCC--------------CCchhhcCCCCCCEEECCCCC---------CCCc
Confidence 887 55666553 46778888888877764 234455667777888777443 3333
Q ss_pred cCcccc-cccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEe
Q 004021 647 DLTWLV-FVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIG 725 (779)
Q Consensus 647 ~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 725 (779)
.+..+. .+++|+.|+|++|.. ..++ ....+++|+.|+|++ +.+..++..+..+++|+.|+
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l-~~~~-----------------~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFI-YDVK-----------------GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCC-CEEE-----------------CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEE
T ss_pred ChHHHhhhCCcccEEecCCCcc-cccc-----------------ccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEE
Confidence 334443 567777777777543 3332 223467777777776 35666666666677777777
Q ss_pred eeCCCCCCCCCCCCCCc-ccccEEEec
Q 004021 726 VYGCPKLKKLPINSSSA-KERRVVIEG 751 (779)
Q Consensus 726 l~~c~~L~~lP~~~~~~-~~~~l~i~~ 751 (779)
+++| .+..+|..+... .++.+.+.+
T Consensus 221 Ls~N-~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 221 LRNN-KLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred ecCC-cCcccchhhccCCCCCEEEcCC
Confidence 7765 356666655443 235566554
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.59 E-value=5.1e-15 Score=170.54 Aligned_cols=220 Identities=20% Similarity=0.172 Sum_probs=157.4
Q ss_pred cCcccccCccccccCCccEEEcccccc-cccc--cCcc--ccccccccccccc---chhhcccccCceeeecCCcccccc
Q 004021 481 AGVKLTEAPKVKEWEGAKRISLMANEI-ESLS--EIPT--LLSLRRNDSLTEL---PSRISSLVSLHHLDLSLTHIRGLP 552 (779)
Q Consensus 481 ~~~~~~~~~~~~~~~~lr~l~l~~~~~-~~l~--~~~~--lL~L~~~~~l~~l---p~~i~~L~~L~~L~L~~~~i~~lp 552 (779)
.+..+..+|.. .+..++.|++.+|.. ..++ ..+. .|++++| .+..+ |..+..+++|++|++++|.++.+|
T Consensus 315 ~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 392 (606)
T 3vq2_A 315 IRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392 (606)
T ss_dssp ESCCCSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEEC
T ss_pred ccccCcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccch
Confidence 34444566655 777888888888732 2221 1112 3888888 76655 777888888888888888888888
Q ss_pred hhhccCccCcEeeccCCcCCCCCch-hhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEe
Q 004021 553 QELKALEKLRYLNLEYTHYLSIIPH-QLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSF 631 (779)
Q Consensus 553 ~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 631 (779)
..+.++++|++|++++|. +..+++ ..+..+++|++|++++|.+.. ..+..++.+++|+.|+++.
T Consensus 393 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKI--------------DFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEE--------------CCTTTTTTCTTCCEEECTT
T ss_pred hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCc--------------cchhhhcCCCCCCEEECCC
Confidence 888888888888888884 444433 337788888888888887663 2344566667777777766
Q ss_pred ecccc------cccCCCCCcc----------cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCC
Q 004021 632 RSSLA------VQKFFKYPKL----------DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFT 695 (779)
Q Consensus 632 ~~~~~------~~~~~~L~~L----------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (779)
|.... +..+++|+.| .+.++..+++|+.|+|++|.....++. .+..++
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------~~~~l~ 521 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS----------------HYNQLY 521 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG----------------GTTTCT
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH----------------HccCCC
Confidence 55432 2344555555 455688899999999999865554433 678899
Q ss_pred CccEEEccCCCCCccccCCCCCCC-CccEEeeeCCCCCCC
Q 004021 696 QLESLGILYGPDLKSIYPNPLHFP-KLKKIGVYGCPKLKK 734 (779)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~L~~ 734 (779)
+|+.|+|+++ .++.+|..+..++ +|++|++++||-...
T Consensus 522 ~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 522 SLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred cCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999999995 6889998888887 599999999875443
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=2.4e-15 Score=171.16 Aligned_cols=106 Identities=20% Similarity=0.235 Sum_probs=59.4
Q ss_pred cccCCccEEEcccccccccccCc-----c--cccccccccccccchh-hcccccCceeeecCCcccc--cchhhccCccC
Q 004021 492 KEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELPSR-ISSLVSLHHLDLSLTHIRG--LPQELKALEKL 561 (779)
Q Consensus 492 ~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~--lp~~~~~L~~L 561 (779)
..+.++++|++++|.+..++... . .|+|++| .+..+|.. |+++++|++|++++|.++. .|..++++++|
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 34455566666655555444211 1 2666666 55555433 6666666666666666653 34556666666
Q ss_pred cEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCC
Q 004021 562 RYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 562 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
++|++++|..+..+|...++++++|++|++++|.+.+
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 6666666644555554336666666666666665554
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=9.9e-15 Score=164.78 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=85.5
Q ss_pred cCcccccCccccccCCccEEEcccccccccccC-----cc--ccccccccccccc-chhhcccccCceeeecCCcccccc
Q 004021 481 AGVKLTEAPKVKEWEGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLP 552 (779)
Q Consensus 481 ~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp 552 (779)
.+..+..+|..- ..++++|++++|.+..++.. .. .|+|++| .+..+ |..|+++++|++|+|++|.++.+|
T Consensus 8 s~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 8 SKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp TTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEE
T ss_pred CCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecC
Confidence 344555555422 27889999999988776531 12 4899999 88877 778899999999999999998888
Q ss_pred hhhccCccCcEeeccCCcCCCC--CchhhhcCCccCcEeeeccccCCC
Q 004021 553 QELKALEKLRYLNLEYTHYLSI--IPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 553 ~~~~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
.. .+++|++|++++| .+.. +|.. ++++++|++|++++|.+..
T Consensus 86 ~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred cc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccch
Confidence 77 8889999999998 4554 5665 8889999999988887653
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=9.9e-15 Score=152.48 Aligned_cols=183 Identities=21% Similarity=0.243 Sum_probs=147.9
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
.|++++| .+..+| .+..+++|++|++++|.++.+|. +.++++|++|++++| .++.+|. +..+++|++|++++|.
T Consensus 45 ~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 45 TLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp EEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG--GTTCTTCCEEECTTSC
T ss_pred EEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchh--hcCCCCCCEEECCCCC
Confidence 3899999 899888 69999999999999999999988 999999999999999 5788874 8999999999999998
Q ss_pred CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccc
Q 004021 596 SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVD 675 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 675 (779)
+.. +..+..+++|+.|+++.|... .+ +.+..+++|+.|++++|.. ..+
T Consensus 119 l~~----------------~~~l~~l~~L~~L~l~~n~l~---------~~--~~l~~l~~L~~L~l~~n~l-~~~---- 166 (308)
T 1h6u_A 119 ITD----------------VTPLAGLSNLQVLYLDLNQIT---------NI--SPLAGLTNLQYLSIGNAQV-SDL---- 166 (308)
T ss_dssp CCC----------------CGGGTTCTTCCEEECCSSCCC---------CC--GGGGGCTTCCEEECCSSCC-CCC----
T ss_pred CCC----------------chhhcCCCCCCEEECCCCccC---------cC--ccccCCCCccEEEccCCcC-CCC----
Confidence 874 123888999999999866433 22 2367889999999999753 332
Q ss_pred cccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 676 KLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
..+..+++|+.|+++++ .+..++. ...+++|++|++++| .+..+|.......++.+.+.++
T Consensus 167 -------------~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 167 -------------TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp -------------GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEE
T ss_pred -------------hhhcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCC
Confidence 13678899999999984 6777765 678999999999997 4777775333344577777755
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=166.91 Aligned_cols=96 Identities=25% Similarity=0.221 Sum_probs=85.6
Q ss_pred cEEEcccccccccccCcc----cccccccccccccc-hhhcccccCceeeecCCccccc-chhhccCccCcEeeccCCcC
Q 004021 498 KRISLMANEIESLSEIPT----LLSLRRNDSLTELP-SRISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 498 r~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~ 571 (779)
+++++++|.++.+|.... .|+|++| .+..+| ..|.++++|++|+|++|.++.+ |..|+++++|++|++++| .
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-K 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-C
T ss_pred ceEecCCCCcccccccccccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-c
Confidence 679999999998886433 5999999 888875 6899999999999999999987 678999999999999999 6
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCC
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
++.+|.. .+++|++|++++|.+.+
T Consensus 81 l~~lp~~---~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 81 LVKISCH---PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp CCEEECC---CCCCCSEEECCSSCCSS
T ss_pred eeecCcc---ccCCccEEeccCCcccc
Confidence 8899984 89999999999999876
No 64
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1.2e-14 Score=147.05 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=51.5
Q ss_pred CccEEEcccccccccccCcc----ccccccccccccc-chhhcccccCceeeecCCcccccchh-hccCccCcEeeccCC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYT 569 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~ 569 (779)
..++++++++.+..+|.... .|+|++| .+..+ |..|.++++|++|+|++|.++.++.. +.++++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34566666666655554322 3555555 45444 22455555555555555555554332 455555555555555
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCC
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSE 597 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 597 (779)
.++.+|...+..+++|++|++++|.+.
T Consensus 94 -~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 94 -QLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -cccccChhHhcccCCCCEEEcCCCcCC
Confidence 344454443455555555555555444
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.58 E-value=1.3e-14 Score=169.47 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=88.4
Q ss_pred cCcccccCccccccCCccEEEcccccccccccCc-----c--ccccccccccccc-chhhcccccCceeeecCCcccccc
Q 004021 481 AGVKLTEAPKVKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLP 552 (779)
Q Consensus 481 ~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp 552 (779)
.+..+..+|..- ...+++|++++|.+..++... . .|+|++| .+..+ |..|+++++|++|+|++|.++.+|
T Consensus 12 s~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 12 SHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp CSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred CCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccC
Confidence 344555566422 268899999999888776531 1 3888888 77776 677888999999999999888888
Q ss_pred h-hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCC
Q 004021 553 Q-ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 553 ~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
. .|+++++|++|++++| .+..+|+..++++++|++|++++|.+.+
T Consensus 90 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS 135 (680)
T ss_dssp TTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSC
T ss_pred hhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccc
Confidence 7 4888999999999988 5677775558889999999998887765
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.58 E-value=1e-14 Score=160.93 Aligned_cols=101 Identities=23% Similarity=0.277 Sum_probs=54.1
Q ss_pred cccCccccccCCccEEEcccccccccccC--cc--cccccccccccccchhhcccccCceeeecCCcccccchhhccCcc
Q 004021 485 LTEAPKVKEWEGAKRISLMANEIESLSEI--PT--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEK 560 (779)
Q Consensus 485 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~ 560 (779)
+..+|.+..+..+++|++++|.+..++-. +. .|++++| .+..+| ++++++|++|++++|.++.+| ++++++
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~ 128 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPL 128 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTT
T ss_pred cccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCeec--CCCCCc
Confidence 33344445555666666666666554311 11 2566666 555554 555666666666666655554 555566
Q ss_pred CcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 561 LRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 561 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
|++|++++| .++.+| ++.+++|++|++++|
T Consensus 129 L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 129 LTYLNCARN-TLTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp CCEEECTTS-CCSCCC---CTTCTTCCEEECTTC
T ss_pred CCEEECCCC-ccceec---cccCCcCCEEECCCC
Confidence 666666555 344442 445555555555554
No 67
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.58 E-value=6.9e-15 Score=126.99 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHHhhhhcchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCchhHHHHHHHHHHHHHHHHH
Q 004021 8 SLPPDLFSRTLHRVGEQANYVWGLKKNLEGLKTEMRKLTRTRDDLVNKVEVEEQPRRTRRTNRVAGWLEDVQKLGTEFTE 87 (779)
Q Consensus 8 ~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~~Wl~~l~~~~~d~ed 87 (779)
|+++.+++||.+++.+|+.++.++++++++|+++|+.|+++|.+ |+.+.....+++++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999998 66552115789999999999999999999
Q ss_pred HHHHHHHHhhh
Q 004021 88 LQQVRAQEMDR 98 (779)
Q Consensus 88 ~ld~~~~~~~~ 98 (779)
++|+|.++...
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999988753
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.58 E-value=7.7e-15 Score=169.07 Aligned_cols=239 Identities=18% Similarity=0.153 Sum_probs=133.1
Q ss_pred cccCCccEEEcccccccccccCcc------ccccccccccccc-chhhcccccCceeeecCCccc-ccchh-hccCccCc
Q 004021 492 KEWEGAKRISLMANEIESLSEIPT------LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIR-GLPQE-LKALEKLR 562 (779)
Q Consensus 492 ~~~~~lr~l~l~~~~~~~l~~~~~------lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~-~lp~~-~~~L~~L~ 562 (779)
..+.+++.|++++|.+..+|.... .|++++| .+..+ |..++++++|++|++++|.+. .+|.. +.++++|+
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 344555556665555555543321 2555555 44443 334555555555555555443 23332 44555555
Q ss_pred EeeccCCcCCCCC---chhhhcCCccCcEeeeccccCCCcccccCC--------ccCCCc---hhhHHhhcCCCCCCcee
Q 004021 563 YLNLEYTHYLSII---PHQLISGFLKLEVLRLLECGSEGVTKEEGN--------VLCDDA---EPLMRELLGLKRLNVLS 628 (779)
Q Consensus 563 ~L~l~~~~~l~~l---p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~--------~~~~~~---~~~~~~l~~L~~L~~L~ 628 (779)
+|++++| .+..+ |.. ++.+++|++|++++|.+...+..... .+.++. ......+..+++|+.|+
T Consensus 354 ~L~l~~n-~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 354 ELDLSHD-DIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp EEECCSS-CCCEEEESTTT-TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred EEECCCC-ccccccCcchh-cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 5555554 23332 222 44455555555554444332211111 000000 11122367788888888
Q ss_pred EEeecccc-----cccCCCCCccc-------------CcccccccCcceEEeccccccceecccccccCcccchhhccCC
Q 004021 629 WSFRSSLA-----VQKFFKYPKLD-------------LTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSE 690 (779)
Q Consensus 629 l~~~~~~~-----~~~~~~L~~L~-------------~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (779)
++.|.... +..+++|+.|. +..+..+++|+.|+|++|... .++. ..
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~---------------~~ 495 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQ---------------HA 495 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-EECT---------------TT
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-ccCh---------------hh
Confidence 88776533 34566676661 134778999999999997654 4433 36
Q ss_pred CCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCC-CCC-cccccEEEec
Q 004021 691 HNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPIN-SSS-AKERRVVIEG 751 (779)
Q Consensus 691 ~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~-~~~-~~~~~l~i~~ 751 (779)
+..+++|+.|+++++.-....+..+..+++| .|++++|. +..+|.. +.. ..++.+.+.+
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTT
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCC
Confidence 7889999999999964444455677789999 99999985 6666543 222 2336777764
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=1.8e-14 Score=164.23 Aligned_cols=137 Identities=22% Similarity=0.248 Sum_probs=97.6
Q ss_pred EEEEcCcccccCccccccCCccEEEcccccccccccC-----cc--ccccccccccccc-chhhcccccCceeeecCCcc
Q 004021 477 FLVRAGVKLTEAPKVKEWEGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHI 548 (779)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i 548 (779)
.+-..+..+..+|.. -...+++|++++|.+..++.. +. .|+|++| .++.+ |..|+++++|++|+|++|.+
T Consensus 35 ~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 35 MVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp EEECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 333445556666642 236888999998888877632 11 3889998 88877 67788899999999999988
Q ss_pred cccchhhccCccCcEeeccCCcCCCCCc--hhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCc
Q 004021 549 RGLPQELKALEKLRYLNLEYTHYLSIIP--HQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNV 626 (779)
Q Consensus 549 ~~lp~~~~~L~~L~~L~l~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 626 (779)
+.+|.. .+++|++|++++| .+..+| .. ++++++|++|++++|.+.. ..+..+..+ +|+.
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L-~L~~ 173 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ--------------LDLLPVAHL-HLSC 173 (562)
T ss_dssp CEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT--------------TTTGGGTTS-CEEE
T ss_pred CccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc--------------Cchhhhhhc-eeeE
Confidence 888877 7889999999988 566654 44 8889999999998887763 122333333 3477
Q ss_pred eeEEeecc
Q 004021 627 LSWSFRSS 634 (779)
Q Consensus 627 L~l~~~~~ 634 (779)
|+++.|..
T Consensus 174 L~L~~n~l 181 (562)
T 3a79_B 174 ILLDLVSY 181 (562)
T ss_dssp EEEEESSC
T ss_pred EEeecccc
Confidence 77776544
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=2.8e-15 Score=157.53 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=115.8
Q ss_pred CCccEEEcccccccccccC-----cc--cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeecc
Q 004021 495 EGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLE 567 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~ 567 (779)
.++++|++++|.+..++.. +. .|+|++| .+..+++ +.++++|++|++++|.++.+|. +++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECC
Confidence 4677777777777655421 11 3777777 6665554 7777777777777777766652 3667777777
Q ss_pred CCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCccc
Q 004021 568 YTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLD 647 (779)
Q Consensus 568 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~ 647 (779)
+| .+..++.. .+++|++|++++|.+.. ..+..++.+++|+.|+++.|.. ..+.
T Consensus 108 ~n-~l~~~~~~---~~~~L~~L~l~~N~l~~--------------~~~~~~~~l~~L~~L~Ls~N~l---------~~~~ 160 (317)
T 3o53_A 108 NN-NISRVSCS---RGQGKKNIYLANNKITM--------------LRDLDEGCRSRVQYLDLKLNEI---------DTVN 160 (317)
T ss_dssp SS-CCSEEEEC---CCSSCEEEECCSSCCCS--------------GGGBCTGGGSSEEEEECTTSCC---------CEEE
T ss_pred CC-ccCCcCcc---ccCCCCEEECCCCCCCC--------------ccchhhhccCCCCEEECCCCCC---------Cccc
Confidence 76 45555543 35667777777776654 2223455566677777664432 2222
Q ss_pred Cccc-ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEee
Q 004021 648 LTWL-VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGV 726 (779)
Q Consensus 648 ~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 726 (779)
+..+ ..+++|+.|+|++|. +..++ ....+++|+.|++++ +.+..++..+..+++|+.|++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~-l~~~~-----------------~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNF-IYDVK-----------------GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSC-CCEEE-----------------CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEEC
T ss_pred HHHHhhccCcCCEEECCCCc-Ccccc-----------------cccccccCCEEECCC-CcCCcchhhhcccCcccEEEC
Confidence 2233 345666666666644 23221 122356666666665 345555555556666666666
Q ss_pred eCCCCCCCCCCCCCCc-ccccEEEe
Q 004021 727 YGCPKLKKLPINSSSA-KERRVVIE 750 (779)
Q Consensus 727 ~~c~~L~~lP~~~~~~-~~~~l~i~ 750 (779)
++| .++.+|..+... .++.+.+.
T Consensus 222 ~~N-~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 222 RNN-KLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TTS-CCCEECTTCCCCTTCCEEECT
T ss_pred cCC-cccchhhHhhcCCCCCEEEcc
Confidence 665 455566544333 22555554
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1.8e-14 Score=145.77 Aligned_cols=171 Identities=23% Similarity=0.291 Sum_probs=137.8
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccch-hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
.++++++ .+..+|..+. .+|++|+|++|.++.++. .+.++++|++|++++| .+..+++..+..+++|++|++++|
T Consensus 18 ~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 18 EVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp EEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC
Confidence 3788888 8999998776 689999999999988765 5899999999999999 677777766899999999999999
Q ss_pred cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccc
Q 004021 595 GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICV 674 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 674 (779)
.+.. ..+..+..+++|+.|+++.|. ++.+.+..+..+++|+.|+|++|. +..++.
T Consensus 94 ~l~~--------------~~~~~~~~l~~L~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~- 148 (251)
T 3m19_A 94 QLAS--------------LPLGVFDHLTQLDKLYLGGNQ---------LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPA- 148 (251)
T ss_dssp CCCC--------------CCTTTTTTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-
T ss_pred cccc--------------cChhHhcccCCCCEEEcCCCc---------CCCcChhHhccCCcccEEECcCCc-CCccCH-
Confidence 8875 233456788999999998554 444444556788999999999964 444443
Q ss_pred ccccCcccchhhccCCCCCCCCccEEEccCCCCCccccC-CCCCCCCccEEeeeCCC
Q 004021 675 DKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYP-NPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 730 (779)
..+..+++|+.|+|++ +.+..++. .+..+++|+.|++++|+
T Consensus 149 --------------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 149 --------------GAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp --------------TTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred --------------HHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 3577899999999998 46777776 56689999999999876
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=3.2e-14 Score=162.07 Aligned_cols=108 Identities=24% Similarity=0.313 Sum_probs=72.5
Q ss_pred CcccccCc--cccccCCccEEEcccccccccccCc-----c--cccccccccccccchhhcccccCceeeecCCcccccc
Q 004021 482 GVKLTEAP--KVKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLP 552 (779)
Q Consensus 482 ~~~~~~~~--~~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp 552 (779)
+..+..++ .+..+.++++|++++|.+..++... . .|+|++| .+..+|.. .+++|++|++++|.++.+|
T Consensus 61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSCCSBCC
T ss_pred CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCCCccccC
Confidence 33444443 3456677888888888777664321 1 3788888 77777766 7788888888888777654
Q ss_pred --hhhccCccCcEeeccCCcCCCCCchhhhcCCccC--cEeeeccccC
Q 004021 553 --QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKL--EVLRLLECGS 596 (779)
Q Consensus 553 --~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~ 596 (779)
..++++++|++|++++| .+... . +..+++| ++|++++|.+
T Consensus 138 ~p~~~~~l~~L~~L~L~~n-~l~~~--~-~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 138 VCKEFGNLTKLTFLGLSAA-KFRQL--D-LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCGGGGGCTTCCEEEEECS-BCCTT--T-TGGGTTSCEEEEEEEESSC
T ss_pred chHhhcccCcccEEecCCC-ccccC--c-hhhhhhceeeEEEeecccc
Confidence 67888888888888877 34432 1 4455555 8888887766
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=3e-14 Score=157.13 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=88.1
Q ss_pred cccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEe
Q 004021 490 KVKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYL 564 (779)
Q Consensus 490 ~~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L 564 (779)
.+..+.++++|++++|.+..+|.... .|+|++| .++.+| ++++++|++|++++|.++.+| ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 44567899999999999988764322 4999999 899887 899999999999999999986 8999999999
Q ss_pred eccCCcCCCCCchhhhcCCccCcEeeeccccCCCc
Q 004021 565 NLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGV 599 (779)
Q Consensus 565 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 599 (779)
++++| .++.+| ++.+++|++|++++|.+.++
T Consensus 112 ~L~~N-~l~~l~---~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 112 NCDTN-KLTKLD---VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp ECCSS-CCSCCC---CTTCTTCCEEECTTSCCSCC
T ss_pred ECCCC-cCCeec---CCCCCcCCEEECCCCcccee
Confidence 99999 677775 78999999999999998864
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=1.1e-14 Score=152.58 Aligned_cols=195 Identities=18% Similarity=0.221 Sum_probs=151.0
Q ss_pred ccCCccEEEcccccccc-cccCc------c--cccccccccccccchhhccc-----ccCceeeecCCcccccc-hhhcc
Q 004021 493 EWEGAKRISLMANEIES-LSEIP------T--LLSLRRNDSLTELPSRISSL-----VSLHHLDLSLTHIRGLP-QELKA 557 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~-l~~~~------~--lL~L~~~~~l~~lp~~i~~L-----~~L~~L~L~~~~i~~lp-~~~~~ 557 (779)
.+.++++|++++|.+.. +|... . .|+|++| .+..+|..++++ ++|++|++++|.+..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 35789999999999873 55432 1 3999999 898889889888 99999999999999987 78999
Q ss_pred CccCcEeeccCCcCCCC--Cchhhh--cCCccCcEeeeccccCCCcccccCCccCCCchhhH-HhhcCCCCCCceeEEee
Q 004021 558 LEKLRYLNLEYTHYLSI--IPHQLI--SGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLM-RELLGLKRLNVLSWSFR 632 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~--lp~~~i--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~~L~l~~~ 632 (779)
+++|++|++++|...+. +|.. + +.+++|++|++++|.+..+ ...+ .-+..+++|+.|+++.|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGMETP------------SGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCCH------------HHHHHHHHHTTCCCSEEECTTS
T ss_pred CCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCcch------------HHHHHHHHhcCCCCCEEECCCC
Confidence 99999999999953333 3444 4 8999999999999988741 1222 33467899999999966
Q ss_pred cccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc
Q 004021 633 SSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY 712 (779)
Q Consensus 633 ~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (779)
...... ..+.+..+++|+.|+|++|.. ..++. .+. ++|+.|++++ +.++.+|
T Consensus 239 ~l~~~~--------~~~~~~~l~~L~~L~Ls~N~l-~~ip~----------------~~~--~~L~~L~Ls~-N~l~~~p 290 (312)
T 1wwl_A 239 SLRDAA--------GAPSCDWPSQLNSLNLSFTGL-KQVPK----------------GLP--AKLSVLDLSY-NRLDRNP 290 (312)
T ss_dssp CCCSSC--------CCSCCCCCTTCCEEECTTSCC-SSCCS----------------SCC--SEEEEEECCS-SCCCSCC
T ss_pred cCCccc--------chhhhhhcCCCCEEECCCCcc-Chhhh----------------hcc--CCceEEECCC-CCCCCCh
Confidence 543221 123455678999999999754 45543 332 8999999998 5788886
Q ss_pred CCCCCCCCccEEeeeCCC
Q 004021 713 PNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 713 ~~~~~l~~L~~L~l~~c~ 730 (779)
. ...+++|++|++++++
T Consensus 291 ~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp C-TTTSCEEEEEECTTCT
T ss_pred h-HhhCCCCCEEeccCCC
Confidence 6 7899999999999875
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=2.3e-14 Score=152.77 Aligned_cols=224 Identities=15% Similarity=0.135 Sum_probs=147.5
Q ss_pred cEEEcccccccccccCcc----cccccccccccccch-hhcccccCceeeecCCcccc-cch-hhccCccCcEeeccCCc
Q 004021 498 KRISLMANEIESLSEIPT----LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRG-LPQ-ELKALEKLRYLNLEYTH 570 (779)
Q Consensus 498 r~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~-lp~-~~~~L~~L~~L~l~~~~ 570 (779)
+.+..++++++++|...+ -|+|++| .|+.+|. .|.+|++|++|+|++|.+.+ +|. .|.+|++|+.+...++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 456666777777765432 4888888 8888875 57889999999999998744 554 47888888765544443
Q ss_pred CCCCCchhhhcCCccCcEeeeccccCCCcccccCC--------ccCC--Cc-hhhHHhhcCC-CCCCceeEEeecccccc
Q 004021 571 YLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN--------VLCD--DA-EPLMRELLGL-KRLNVLSWSFRSSLAVQ 638 (779)
Q Consensus 571 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~--------~~~~--~~-~~~~~~l~~L-~~L~~L~l~~~~~~~~~ 638 (779)
.+..+|++.+..+++|++|++++|.+..++..... ...+ .. ......+..+ ..++.|+++.|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N------ 164 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN------ 164 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS------
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc------
Confidence 78888777688899999999998887764321110 0000 00 0000111122 12333444322
Q ss_pred cCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCC
Q 004021 639 KFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHF 718 (779)
Q Consensus 639 ~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l 718 (779)
.++.+. +.....++|+.|.+++++.++.++. ..+..+++|+.|++++ +.++.+|.. .|
T Consensus 165 ---~i~~i~-~~~f~~~~L~~l~l~~~n~l~~i~~---------------~~f~~l~~L~~LdLs~-N~l~~lp~~--~~ 222 (350)
T 4ay9_X 165 ---GIQEIH-NSAFNGTQLDELNLSDNNNLEELPN---------------DVFHGASGPVILDISR-TRIHSLPSY--GL 222 (350)
T ss_dssp ---CCCEEC-TTSSTTEEEEEEECTTCTTCCCCCT---------------TTTTTEECCSEEECTT-SCCCCCCSS--SC
T ss_pred ---cccCCC-hhhccccchhHHhhccCCcccCCCH---------------HHhccCcccchhhcCC-CCcCccChh--hh
Confidence 223322 2223456788888888777777765 4678899999999998 578888764 58
Q ss_pred CCccEEeeeCCCCCCCCCCCCCCcccccEEEe
Q 004021 719 PKLKKIGVYGCPKLKKLPINSSSAKERRVVIE 750 (779)
Q Consensus 719 ~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~ 750 (779)
.+|+.|.+.+|++++.+|..-....++.+.+.
T Consensus 223 ~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred ccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 89999999999999999975444455777765
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.55 E-value=3.1e-14 Score=162.68 Aligned_cols=252 Identities=16% Similarity=0.141 Sum_probs=171.4
Q ss_pred cCcccccCccccccCCccEEEcccccccccccC-----cc--ccccccccccccc-chhhcccccCceeeecCCcccccc
Q 004021 481 AGVKLTEAPKVKEWEGAKRISLMANEIESLSEI-----PT--LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLP 552 (779)
Q Consensus 481 ~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-----~~--lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp 552 (779)
.+.++..+|.. -...+++|++++|.+..++.. +. .|+|++| .+..+ |..|+++++|++|+|++|.++.+|
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp CSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccC
Confidence 34455566642 235799999999998877543 12 4999999 88887 557899999999999999998876
Q ss_pred -hhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEe
Q 004021 553 -QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSF 631 (779)
Q Consensus 553 -~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 631 (779)
..|+++++|++|++++| .+..+|...++++++|++|++++|.+.. ...+..++++++|+.|+++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~-------------~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS-------------FKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCC-------------CCCCGGGGGCTTCCEEECTT
T ss_pred HhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccce-------------ecChhhhcccCCCCEEeCcC
Confidence 57999999999999999 6788887448999999999999998764 23466788899999999987
Q ss_pred eccccc-----ccCCCC----Ccc----------cCcccccccCcceEEeccccccc-----------------------
Q 004021 632 RSSLAV-----QKFFKY----PKL----------DLTWLVFVQNLKELEIIVCTEME----------------------- 669 (779)
Q Consensus 632 ~~~~~~-----~~~~~L----~~L----------~~~~l~~l~~L~~L~L~~~~~~~----------------------- 669 (779)
+....+ ..+.+| ..| .+..+.. .+|+.|++++|....
T Consensus 159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred CccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 654332 223333 222 2222222 267778777752110
Q ss_pred -------eeccccccc------------CcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCC
Q 004021 670 -------EIICVDKLR------------DVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 670 -------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (779)
.+......+ ....+....+..+..+++|+.|+++++ .+..+|.....+ +|++|++++|.
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~ 315 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCK 315 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCB
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCc
Confidence 000000000 000011111235667899999999985 567788877777 99999999985
Q ss_pred CCCCCCCCCCCcccccEEEechH
Q 004021 731 KLKKLPINSSSAKERRVVIEGLK 753 (779)
Q Consensus 731 ~L~~lP~~~~~~~~~~l~i~~~~ 753 (779)
+..+|.. ....++.+.+.++.
T Consensus 316 -~~~l~~~-~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 316 -FGQFPTL-KLKSLKRLTFTSNK 336 (570)
T ss_dssp -CSSCCBC-BCSSCCEEEEESCB
T ss_pred -ccccCcc-cccccCEEeCcCCc
Confidence 6688873 33455888887654
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.55 E-value=6.4e-14 Score=163.65 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=90.0
Q ss_pred cccccCcc--ccccCCccEEEcccccccccccCc-----c--cccccccccccccch-hhcccccCceeeecCCcccccc
Q 004021 483 VKLTEAPK--VKEWEGAKRISLMANEIESLSEIP-----T--LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGLP 552 (779)
Q Consensus 483 ~~~~~~~~--~~~~~~lr~l~l~~~~~~~l~~~~-----~--lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp 552 (779)
..+..++. +..+.++++|++++|.+..++... . .|+|++| .+..+|. .|+++++|++|++++|.++.+|
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccC
Confidence 33444442 567789999999999887764421 1 4899999 8888876 5899999999999999998887
Q ss_pred -hhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCc
Q 004021 553 -QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGV 599 (779)
Q Consensus 553 -~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 599 (779)
..|+++++|++|++++| .+..++++.++++++|++|++++|.+.++
T Consensus 114 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred hhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc
Confidence 56899999999999999 45555544488999999999999887764
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=3.6e-14 Score=161.39 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=53.9
Q ss_pred cccccccccccc-chhhcccccCceeeecCCcccccc-hhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 517 LSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLP-QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 517 L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
|+|++| .++.+ |..|+++++|++|++++|.++.+| ..|+++++|++|++++| .+..+|+..++++++|++|++++|
T Consensus 31 L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 31 LDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp EECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTC
T ss_pred EECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCC
Confidence 455555 44444 345556666666666666555544 34556666666666665 344555444556666666666655
Q ss_pred cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEee
Q 004021 595 GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFR 632 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 632 (779)
.+.. ...+..++.+++|+.|+++.|
T Consensus 109 ~l~~-------------~~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 109 PYQT-------------LGVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp CCSS-------------SCSSCSCTTCTTCCEEEEEES
T ss_pred cccc-------------cchhhhhhccCCccEEECCCC
Confidence 5442 112233455555666665543
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=1.2e-13 Score=152.31 Aligned_cols=216 Identities=18% Similarity=0.154 Sum_probs=135.4
Q ss_pred cCcccccCccccccCCccEEEcccccccccccCcc---cccccccccccccchhhcccccCceeeecCCcccccchhhcc
Q 004021 481 AGVKLTEAPKVKEWEGAKRISLMANEIESLSEIPT---LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKA 557 (779)
Q Consensus 481 ~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~---lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~ 557 (779)
.+..+..+|.+..+.++++|++++|.+..+|..+. .|++++| .+..+| .++++++|++|++++|.++.+|...
T Consensus 139 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~-- 214 (454)
T 1jl5_A 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLPDLP-- 214 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC--
T ss_pred cCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCCCCc--
Confidence 34455556667778889999999998888776543 4899999 888888 6899999999999999988887643
Q ss_pred CccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCC----ccCCCchhhHHhhcCCCCCCceeEEeec
Q 004021 558 LEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN----VLCDDAEPLMRELLGLKRLNVLSWSFRS 633 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 633 (779)
.+|++|++++| .+..+|. ++.+++|++|++++|.+.+++....+ .+.++....+. ..+++|+.|+++.|.
T Consensus 215 -~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~--~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 215 -LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP--ELPQSLTFLDVSENI 288 (454)
T ss_dssp -TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSC
T ss_pred -CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccC--cccCcCCEEECcCCc
Confidence 58899999999 6778885 88999999999999888764432111 01110000000 012456666666554
Q ss_pred ccccccC-CCCCcccC-----cccccc-cCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCC
Q 004021 634 SLAVQKF-FKYPKLDL-----TWLVFV-QNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGP 706 (779)
Q Consensus 634 ~~~~~~~-~~L~~L~~-----~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 706 (779)
...++.. ++|+.|.+ ..+..+ ++|+.|++++|.. ..++. .+++|+.|+++++
T Consensus 289 l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l-~~lp~-------------------~~~~L~~L~L~~N- 347 (454)
T 1jl5_A 289 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPA-------------------LPPRLERLIASFN- 347 (454)
T ss_dssp CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCC-SCCCC-------------------CCTTCCEEECCSS-
T ss_pred cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcc-ccccc-------------------cCCcCCEEECCCC-
Confidence 4433222 34444411 112222 3566666665432 22221 2466777777663
Q ss_pred CCccccCCCCCCCCccEEeeeCCC
Q 004021 707 DLKSIYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 707 ~l~~l~~~~~~l~~L~~L~l~~c~ 730 (779)
.++.+|. .+++|++|++++|+
T Consensus 348 ~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 348 HLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC
T ss_pred ccccccc---hhhhccEEECCCCC
Confidence 4555555 35677777776654
No 80
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.53 E-value=1.7e-12 Score=138.39 Aligned_cols=276 Identities=15% Similarity=0.126 Sum_probs=168.6
Q ss_pred cccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEec------------hHH
Q 004021 154 EQTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQ------------TFQ 221 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~------------~i~ 221 (779)
.+.|+||++++++|.+++..+ +++.|+|++|+|||||++++++.. . .+|+++. .+.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHH
Confidence 367999999999999998764 799999999999999999998764 1 6677662 233
Q ss_pred HHHHHHhCCC--------------c-chhhhhcchhhHHHHHHHhhCC-Ccceeehhhcccccc----------------
Q 004021 222 DDIGKRIGFS--------------E-DKKWKEKSLQDKAVDISSILSP-KKFRIDLTELGVPLQ---------------- 269 (779)
Q Consensus 222 ~~i~~~l~~~--------------~-~~~~~~~~~~~~~~~l~~~L~~-kr~~~~ld~l~~~~~---------------- 269 (779)
..+...+... . .......+..+....+.+..+. ++..+++|++.....
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 4444443320 0 0000112344455555555432 377777777643211
Q ss_pred -ccCCCcEEEEEeCchhhhhh-----------cC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHh
Q 004021 270 -MLNAGFKIVLKTRSAGVCDQ-----------MD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLAREC 335 (779)
Q Consensus 270 -~~~~gs~IivTTR~~~va~~-----------~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c 335 (779)
....+.++|+|++...+... .+ ...+.+.+|+.+|+.+++...+....... -.+.+..|++.|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~~t 235 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVELL 235 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHH
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHh
Confidence 11257889999987543211 11 24789999999999999987654332111 146788999999
Q ss_pred CCChhHHHHHHHHhcCCCChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcC---CccchhhhhhhccccCCCcccC
Q 004021 336 GRLPLALKTVGRAMKSQKKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSL---SMDKLRSCLLYCCLYPEDYKIP 412 (779)
Q Consensus 336 ~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~cf~~~s~fp~~~~i~ 412 (779)
+|+|+++..++..+....+...+.. .+.. .+...+.-.+..+ ++ ..+..+..+|. + .++
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~---g-~~~ 297 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMK---RTLE----------VAKGLIMGELEELRRRSP-RYVDILRAIAL---G-YNR 297 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHH---HHHH----------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT---T-CCS
T ss_pred CCCHHHHHHHHHHHhccccHhHHHH---HHHH----------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh---C-CCC
Confidence 9999999998876432122222211 1110 1111111112222 66 78888888887 2 234
Q ss_pred hHHHHHHHHHc-CCCcchhhHHHHHHHHHHcccccccCCCcEEe-chHHHHHHH
Q 004021 413 KRSLIDYWISE-GFMADFDRGCEFINDLLHACLLEEEGDDHVKM-HDMIREMSL 464 (779)
Q Consensus 413 ~~~Li~~W~a~-g~~~~~~~~~~~l~~L~~~sll~~~~~~~~~m-Hdlv~~~a~ 464 (779)
...+.....+. |-+ +......+++.|.+.+++...+ +.|.+ |++++++.+
T Consensus 298 ~~~l~~~~~~~~~~~-~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKGTKI-PEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 45554443222 112 2256778999999999998763 45665 678887753
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=1.7e-13 Score=151.08 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=161.1
Q ss_pred cCCccEEEcccccccccccCcc---cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCc
Q 004021 494 WEGAKRISLMANEIESLSEIPT---LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTH 570 (779)
Q Consensus 494 ~~~lr~l~l~~~~~~~l~~~~~---lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~ 570 (779)
..+++.|++++|.+..++..+. .|++++| .+..+| .++++++|++|++++|.++.+|..+ .+|++|++++|
T Consensus 110 ~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n- 183 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN- 183 (454)
T ss_dssp CTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-
T ss_pred cCCCcEEECCCCccCcccCCCCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-
Confidence 3688889998888887766542 4999999 888899 6999999999999999999988654 58999999999
Q ss_pred CCCCCchhhhcCCccCcEeeeccccCCCcccccCC----ccCCCchhhHHhhcCCCCCCceeEEeecccccc-cCCCCCc
Q 004021 571 YLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGN----VLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQ-KFFKYPK 645 (779)
Q Consensus 571 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~-~~~~L~~ 645 (779)
.+..+|. ++++++|++|++++|.+.++|....+ .+.++....+..++.+++|+.|+++.|....++ .+++|+.
T Consensus 184 ~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~ 261 (454)
T 1jl5_A 184 QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261 (454)
T ss_dssp CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCE
T ss_pred cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCE
Confidence 6788884 89999999999999988875543222 111111112235778899999999887766542 2355666
Q ss_pred ccCc-----cc-ccccCcceEEeccccccceecccccccCcccchhh--ccCCCCCC-CCccEEEccCCCCCccccCCCC
Q 004021 646 LDLT-----WL-VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEI--IGSEHNFF-TQLESLGILYGPDLKSIYPNPL 716 (779)
Q Consensus 646 L~~~-----~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~ 716 (779)
|.+. .+ ..+++|+.|++++|.. ..++.... ....+.-. ....+..+ ++|+.|++++ +.+..+|..
T Consensus 262 L~l~~N~l~~l~~~~~~L~~L~ls~N~l-~~l~~~~~--~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~~-- 335 (454)
T 1jl5_A 262 LNVRDNYLTDLPELPQSLTFLDVSENIF-SGLSELPP--NLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPAL-- 335 (454)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCC-SEESCCCT--TCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCCCC--
T ss_pred EECCCCcccccCcccCcCCEEECcCCcc-CcccCcCC--cCCEEECcCCcCCcccCCcCcCCEEECCC-Ccccccccc--
Confidence 5211 01 1236788888888653 33221000 00000000 00012233 5899999988 466666653
Q ss_pred CCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 717 HFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 717 ~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
+++|+.|++++| +++.+|. ....++.+.+.++
T Consensus 336 -~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N 367 (454)
T 1jl5_A 336 -PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN 367 (454)
T ss_dssp -CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred -CCcCCEEECCCC-ccccccc--hhhhccEEECCCC
Confidence 689999999987 6888988 2334577777653
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=4e-14 Score=157.59 Aligned_cols=201 Identities=14% Similarity=0.098 Sum_probs=149.4
Q ss_pred cCcccccCc--cccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccch
Q 004021 481 AGVKLTEAP--KVKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ 553 (779)
Q Consensus 481 ~~~~~~~~~--~~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 553 (779)
.+..+..++ .+..+.+++.|++++|.+...+.... .|+|++| .+..+|. .++|++|++++|.++.+|.
T Consensus 42 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~~N~l~~~~~ 116 (487)
T 3oja_A 42 SGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANNNISRVSC 116 (487)
T ss_dssp CSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSSCCCCEEE
T ss_pred eCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCC-cCCCCCC----CCCcCEEECcCCcCCCCCc
Confidence 344444443 35677899999999999876554322 3999999 8887764 3899999999999998875
Q ss_pred hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhc-CCCCCCceeEEee
Q 004021 554 ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELL-GLKRLNVLSWSFR 632 (779)
Q Consensus 554 ~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~ 632 (779)
. .+++|++|++++| .+..+++..++++++|++|++++|.+.+ ..+..+. .+++|+.|+++.|
T Consensus 117 ~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 117 S--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT--------------VNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp C--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE--------------EEGGGGGGGTTTCCEEECTTS
T ss_pred c--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC--------------cChHHHhhhCCcccEEecCCC
Confidence 3 5788999999999 5666655448899999999999998874 3344554 6889999999866
Q ss_pred cccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc
Q 004021 633 SSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY 712 (779)
Q Consensus 633 ~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (779)
....+ +....+++|+.|+|++|. +..++. .+..+++|+.|+|++ +.+..+|
T Consensus 180 ~l~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~----------------~~~~l~~L~~L~Ls~-N~l~~lp 230 (487)
T 3oja_A 180 FIYDV-----------KGQVVFAKLKTLDLSSNK-LAFMGP----------------EFQSAAGVTWISLRN-NKLVLIE 230 (487)
T ss_dssp CCCEE-----------ECCCCCTTCCEEECCSSC-CCEECG----------------GGGGGTTCSEEECTT-SCCCEEC
T ss_pred ccccc-----------cccccCCCCCEEECCCCC-CCCCCH----------------hHcCCCCccEEEecC-CcCcccc
Confidence 54332 223357888999998865 444443 456788899999988 5677888
Q ss_pred CCCCCCCCccEEeeeCCCCC
Q 004021 713 PNPLHFPKLKKIGVYGCPKL 732 (779)
Q Consensus 713 ~~~~~l~~L~~L~l~~c~~L 732 (779)
..+..+++|+.|++++|+-.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBC
T ss_pred hhhccCCCCCEEEcCCCCCc
Confidence 88888889999999887644
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=165.15 Aligned_cols=135 Identities=20% Similarity=0.242 Sum_probs=99.2
Q ss_pred cEEEcccccccccccCcc---ccccccccccccc-chhhcccccCceeeecCC-ccccc-chhhccCccCcEeeccCCcC
Q 004021 498 KRISLMANEIESLSEIPT---LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLT-HIRGL-PQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 498 r~l~l~~~~~~~l~~~~~---lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~-~i~~l-p~~~~~L~~L~~L~l~~~~~ 571 (779)
+.++.+++++..+|..+. .|+|++| .+..+ |..|.++++|++|+|++| .+..+ |..|++|++|++|+|++| .
T Consensus 7 ~~~dcs~~~L~~vP~lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQVLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-K 84 (844)
T ss_dssp EEEEESCCCSSCCCSSCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-C
T ss_pred eEEEccCCCCCCCCCCCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-c
Confidence 456777888888887433 5999999 88876 789999999999999999 55566 778999999999999999 5
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCCc-ccc--cCC-------ccCCCc--h-hhHHhhcCCCCCCceeEEeecc
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEGV-TKE--EGN-------VLCDDA--E-PLMRELLGLKRLNVLSWSFRSS 634 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~~-~~~--~~~-------~~~~~~--~-~~~~~l~~L~~L~~L~l~~~~~ 634 (779)
+..++++.++++++|++|++++|.+.+. +.. +.+ .+..+. . .....++++++|+.|+++.|..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 6666444499999999999999988752 221 211 111111 1 1124567777777777776654
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=6.4e-14 Score=144.96 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=96.9
Q ss_pred ccCCccEEEcccccccccccCcccccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCC
Q 004021 493 EWEGAKRISLMANEIESLSEIPTLLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYL 572 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~l~~~~~lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l 572 (779)
.+.+++.|++.+|.+ ..+| .+..+++|++|++++|.++.+|. +.++++|++|++++| .+
T Consensus 44 ~l~~L~~L~l~~~~i------------------~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l 102 (291)
T 1h6t_A 44 ELNSIDQIIANNSDI------------------KSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KV 102 (291)
T ss_dssp HHHTCCEEECTTSCC------------------CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CC
T ss_pred hcCcccEEEccCCCc------------------ccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cC
Confidence 345666666665544 4443 35566666666666666666665 666666666666666 45
Q ss_pred CCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccc
Q 004021 573 SIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLV 652 (779)
Q Consensus 573 ~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~ 652 (779)
..+|. ++.+++|++|++++|.+.. +..+..+++|+.|+++.|... .+ +.+.
T Consensus 103 ~~~~~--l~~l~~L~~L~L~~n~i~~----------------~~~l~~l~~L~~L~l~~n~l~---------~~--~~l~ 153 (291)
T 1h6t_A 103 KDLSS--LKDLKKLKSLSLEHNGISD----------------INGLVHLPQLESLYLGNNKIT---------DI--TVLS 153 (291)
T ss_dssp CCGGG--GTTCTTCCEEECTTSCCCC----------------CGGGGGCTTCCEEECCSSCCC---------CC--GGGG
T ss_pred CCChh--hccCCCCCEEECCCCcCCC----------------ChhhcCCCCCCEEEccCCcCC---------cc--hhhc
Confidence 55554 6666666666666665553 133555666666666644322 11 3455
Q ss_pred cccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCC
Q 004021 653 FVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 653 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (779)
.+++|+.|++++|.. ..++ .+..+++|+.|+++++ .++.++. +..+++|+.|++++|+
T Consensus 154 ~l~~L~~L~L~~N~l-~~~~-----------------~l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQI-SDIV-----------------PLAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GCTTCSEEECCSSCC-CCCG-----------------GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cCCCCCEEEccCCcc-ccch-----------------hhcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 566666666666532 2221 2445666777776663 4555543 4566667777766653
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=3.3e-14 Score=138.01 Aligned_cols=153 Identities=19% Similarity=0.279 Sum_probs=119.7
Q ss_pred hcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCc
Q 004021 532 ISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDA 611 (779)
Q Consensus 532 i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 611 (779)
.+.+++|++|++++|.++.+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+..
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~l~~------------- 102 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKDVTS------------- 102 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTTCBG-------------
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCccCc-------------
Confidence 477889999999999999888 7899999999999999 6677664 8899999999999987763
Q ss_pred hhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCC
Q 004021 612 EPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEH 691 (779)
Q Consensus 612 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (779)
..+..++.+++|+.|+++.|.. ....+..+..+++|+.|++++|..+..++ .+
T Consensus 103 -~~~~~l~~l~~L~~L~Ls~n~i---------~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----------------~l 155 (197)
T 4ezg_A 103 -DKIPNLSGLTSLTLLDISHSAH---------DDSILTKINTLPKVNSIDLSYNGAITDIM-----------------PL 155 (197)
T ss_dssp -GGSCCCTTCTTCCEEECCSSBC---------BGGGHHHHTTCSSCCEEECCSCTBCCCCG-----------------GG
T ss_pred -ccChhhcCCCCCCEEEecCCcc---------CcHhHHHHhhCCCCCEEEccCCCCccccH-----------------hh
Confidence 3456678889999999885543 32234567788899999999987555542 45
Q ss_pred CCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCC
Q 004021 692 NFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 692 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (779)
..+++|+.|+++++ .+..++ .+..+++|+.|++++++
T Consensus 156 ~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 156 KTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 67899999999985 566666 66788999999998865
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=157.98 Aligned_cols=212 Identities=17% Similarity=0.143 Sum_probs=124.6
Q ss_pred CccEEEcccccccccccCcc----cccccccccccccchhhcccccCceeeecCCccccc---chhhccCccCcEeeccC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGL---PQELKALEKLRYLNLEY 568 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~l~~ 568 (779)
.++.|++.+|.+..+|.... .|++++| .+...... ..+++|++|++++|.++.. |..+.++++|++|++++
T Consensus 305 ~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSN-KGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp CCSEEEEESCBCSSCCBCBCSSCCEEEEESC-BSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred CccEEeeccCcccccCcccccccCEEeCcCC-cccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence 44555555554444433211 2455555 33222111 4556666666666665544 45566666666666666
Q ss_pred CcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccC
Q 004021 569 THYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDL 648 (779)
Q Consensus 569 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~ 648 (779)
| .+..+|.. +..+++|++|++++|.+.. ......+..+++|+.|+++.+. +....+
T Consensus 383 n-~l~~~~~~-~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L~l~~n~---------l~~~~~ 438 (570)
T 2z63_A 383 N-GVITMSSN-FLGLEQLEHLDFQHSNLKQ-------------MSEFSVFLSLRNLIYLDISHTH---------TRVAFN 438 (570)
T ss_dssp C-SEEEEEEE-EETCTTCCEEECTTSEEES-------------CTTSCTTTTCTTCCEEECTTSC---------CEECCT
T ss_pred C-cccccccc-ccccCCCCEEEccCCcccc-------------ccchhhhhcCCCCCEEeCcCCc---------ccccch
Confidence 6 44555555 6666666666666665543 1111235566666666665332 222234
Q ss_pred cccccccCcceEEeccccccc-eecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccc-cCCCCCCCCccEEee
Q 004021 649 TWLVFVQNLKELEIIVCTEME-EIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSI-YPNPLHFPKLKKIGV 726 (779)
Q Consensus 649 ~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l 726 (779)
..+..+++|+.|+|++|.... .++ ..+..+++|+.|+++++ .+..+ |..+..+++|++|++
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p----------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLP----------------DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEEC----------------SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred hhhhcCCcCcEEECcCCcCccccch----------------hhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeC
Confidence 456778889999998876542 333 36778889999999885 45555 566778889999999
Q ss_pred eCCCCCCCCCCC-CCCc-ccccEEEec
Q 004021 727 YGCPKLKKLPIN-SSSA-KERRVVIEG 751 (779)
Q Consensus 727 ~~c~~L~~lP~~-~~~~-~~~~l~i~~ 751 (779)
++| ++..+|.. +... .++.+.+.+
T Consensus 502 ~~n-~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 502 ASN-QLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCC-cCCCCCHHHhhcccCCcEEEecC
Confidence 887 57776653 3333 347777775
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=7.3e-14 Score=146.66 Aligned_cols=201 Identities=14% Similarity=0.098 Sum_probs=133.2
Q ss_pred cCcccccCc--cccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccch
Q 004021 481 AGVKLTEAP--KVKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ 553 (779)
Q Consensus 481 ~~~~~~~~~--~~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 553 (779)
.+..+..++ .+..+.+++.|++++|.+...+.... .|+|++| .+..+| .+++|++|++++|.++.+|.
T Consensus 42 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l~~n~l~~~~~ 116 (317)
T 3o53_A 42 SGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANNNISRVSC 116 (317)
T ss_dssp TTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS-EEEEEE----ECTTCCEEECCSSCCSEEEE
T ss_pred cCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC-cccccc----CCCCcCEEECCCCccCCcCc
Confidence 333444443 34567788888888888766544222 3888888 777665 34788888888888887764
Q ss_pred hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhh-cCCCCCCceeEEee
Q 004021 554 ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMREL-LGLKRLNVLSWSFR 632 (779)
Q Consensus 554 ~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~ 632 (779)
. .+++|++|++++| .+..+++..++.+++|++|++++|.+.. ..+..+ ..+++|+.|+++.|
T Consensus 117 ~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 117 S--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT--------------VNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp C--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCE--------------EEGGGGGGGTTTCCEEECTTS
T ss_pred c--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCc--------------ccHHHHhhccCcCCEEECCCC
Confidence 3 4678888888888 5676766447788888888888887764 223333 35778888888755
Q ss_pred cccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc
Q 004021 633 SSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY 712 (779)
Q Consensus 633 ~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (779)
....+ +....+++|+.|+|++|. +..++. .+..+++|+.|++++ +.+..+|
T Consensus 180 ~l~~~-----------~~~~~l~~L~~L~Ls~N~-l~~l~~----------------~~~~l~~L~~L~L~~-N~l~~l~ 230 (317)
T 3o53_A 180 FIYDV-----------KGQVVFAKLKTLDLSSNK-LAFMGP----------------EFQSAAGVTWISLRN-NKLVLIE 230 (317)
T ss_dssp CCCEE-----------ECCCCCTTCCEEECCSSC-CCEECG----------------GGGGGTTCSEEECTT-SCCCEEC
T ss_pred cCccc-----------ccccccccCCEEECCCCc-CCcchh----------------hhcccCcccEEECcC-Ccccchh
Confidence 43322 122236777777777754 334433 345667777777777 3666777
Q ss_pred CCCCCCCCccEEeeeCCCCC
Q 004021 713 PNPLHFPKLKKIGVYGCPKL 732 (779)
Q Consensus 713 ~~~~~l~~L~~L~l~~c~~L 732 (779)
..+..+++|+.|++++|+-.
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCB
T ss_pred hHhhcCCCCCEEEccCCCcc
Confidence 76667777777777776543
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=3.1e-13 Score=153.64 Aligned_cols=212 Identities=19% Similarity=0.134 Sum_probs=149.3
Q ss_pred CccEEEcccccccccccCcc----cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~ 571 (779)
.++.|++++|.+..+|...+ .|+|++| .++.+|. .+++|++|+|++|.++.+|. .+++|++|++++| .
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-P 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-C
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-c
Confidence 58899999999998886433 5999999 9999997 68999999999999999997 7899999999999 6
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccc-cCCCCCcccCc-
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQ-KFFKYPKLDLT- 649 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~-~~~~L~~L~~~- 649 (779)
++.+|. .+++|++|++++|.+..+|. .+++|+.|+++.|....++ .+++|+.|.+.
T Consensus 113 l~~l~~----~l~~L~~L~L~~N~l~~lp~------------------~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~ 170 (622)
T 3g06_A 113 LTHLPA----LPSGLCKLWIFGNQLTSLPV------------------LPPGLQELSVSDNQLASLPALPSELCKLWAYN 170 (622)
T ss_dssp CCCCCC----CCTTCCEEECCSSCCSCCCC------------------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred CCCCCC----CCCCcCEEECCCCCCCcCCC------------------CCCCCCEEECcCCcCCCcCCccCCCCEEECCC
Confidence 788887 56889999999998876332 1366777777766554432 23344444110
Q ss_pred -cc----ccccCcceEEeccccccceeccccc--------ccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCC
Q 004021 650 -WL----VFVQNLKELEIIVCTEMEEIICVDK--------LRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPL 716 (779)
Q Consensus 650 -~l----~~l~~L~~L~L~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 716 (779)
.+ ..+++|+.|++++|.. ..++.... ...+..+ ...+++|+.|+++++ .++.+| .
T Consensus 171 N~l~~l~~~~~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~~l-------~~~~~~L~~L~Ls~N-~L~~lp---~ 238 (622)
T 3g06_A 171 NQLTSLPMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSL-------PALPSGLKELIVSGN-RLTSLP---V 238 (622)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSC-------CCCCTTCCEEECCSS-CCSCCC---C
T ss_pred CCCCCCcccCCCCcEEECCCCCC-CCCCCccchhhEEECcCCccccc-------CCCCCCCCEEEccCC-ccCcCC---C
Confidence 00 2346777777777543 33322100 0001111 123588999999984 777777 4
Q ss_pred CCCCccEEeeeCCCCCCCCCCCCCCcccccEEEech
Q 004021 717 HFPKLKKIGVYGCPKLKKLPINSSSAKERRVVIEGL 752 (779)
Q Consensus 717 ~l~~L~~L~l~~c~~L~~lP~~~~~~~~~~l~i~~~ 752 (779)
.+++|+.|++++| +++.+|.. ...++.+.+.++
T Consensus 239 ~l~~L~~L~Ls~N-~L~~lp~~--~~~L~~L~Ls~N 271 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN 271 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS
T ss_pred CCCcCcEEECCCC-CCCcCCcc--cccCcEEeCCCC
Confidence 6789999999997 68899983 334577777755
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=7.3e-14 Score=146.19 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=136.0
Q ss_pred ccccccccccc-ccchhh--cccccCceeeecCCccccc-c----hhhccCccCcEeeccCCcCCCCCchhhhcCCccCc
Q 004021 516 LLSLRRNDSLT-ELPSRI--SSLVSLHHLDLSLTHIRGL-P----QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLE 587 (779)
Q Consensus 516 lL~L~~~~~l~-~lp~~i--~~L~~L~~L~L~~~~i~~l-p----~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 587 (779)
.|++++| .+. ..|..+ +++++|++|+|++|.++.. | ..+..+++|++|++++| .+..+|+..++.+++|+
T Consensus 95 ~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 95 ELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALT 172 (310)
T ss_dssp EEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCC
T ss_pred EEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCC
Confidence 3888888 665 457777 8899999999999988762 2 34567899999999999 56777765588999999
Q ss_pred EeeeccccCCCcccccCCccCCCchhhH--HhhcCCCCCCceeEEeecccccccCCCCCccc--Cc-ccccccCcceEEe
Q 004021 588 VLRLLECGSEGVTKEEGNVLCDDAEPLM--RELLGLKRLNVLSWSFRSSLAVQKFFKYPKLD--LT-WLVFVQNLKELEI 662 (779)
Q Consensus 588 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~--~~-~l~~l~~L~~L~L 662 (779)
+|++++|.+.+ ....+ ..++.+++|+.|+++.|.. +.+. +. .+..+++|++|+|
T Consensus 173 ~L~Ls~N~l~~------------~~~~~~~~~~~~l~~L~~L~Ls~N~l---------~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 173 SLDLSDNPGLG------------ERGLMAALCPHKFPAIQNLALRNTGM---------ETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp EEECCSCTTCH------------HHHHHTTSCTTSSCCCCSCBCCSSCC---------CCHHHHHHHHHHHTCCCSSEEC
T ss_pred EEECCCCCCcc------------chhhhHHHhhhcCCCCCEEECCCCCC---------CchHHHHHHHHhcCCCCCEEEC
Confidence 99999987653 01111 1236788999999986543 2221 11 2467789999999
Q ss_pred ccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCc
Q 004021 663 IVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSA 742 (779)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~ 742 (779)
++|......|.. + .....+++|+.|++++ +.++.+|.... ++|+.|++++| ++..+|......
T Consensus 232 s~N~l~~~~p~~--------~-----~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~ 294 (310)
T 4glp_A 232 SHNSLRATVNPS--------A-----PRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELP 294 (310)
T ss_dssp TTSCCCCCCCSC--------C-----SSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCC
T ss_pred CCCCCCccchhh--------H-----HhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCC
Confidence 987654432320 0 1223347999999987 46778877653 89999999887 577777643434
Q ss_pred ccccEEEech
Q 004021 743 KERRVVIEGL 752 (779)
Q Consensus 743 ~~~~l~i~~~ 752 (779)
.++.+.+.+.
T Consensus 295 ~L~~L~L~~N 304 (310)
T 4glp_A 295 EVDNLTLDGN 304 (310)
T ss_dssp CCSCEECSST
T ss_pred CccEEECcCC
Confidence 4577777654
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.5e-13 Score=142.16 Aligned_cols=160 Identities=20% Similarity=0.242 Sum_probs=95.7
Q ss_pred EEEcCcccccCccccccCCccEEEcccccccccccCcccccccccccccccchhhcccccCceeeecCCcccccchhhcc
Q 004021 478 LVRAGVKLTEAPKVKEWEGAKRISLMANEIESLSEIPTLLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKA 557 (779)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~ 557 (779)
+...+..+..++.+..+.+++.|++++|.+ ..+|. ++++++|++|++++|.++.+|. +.+
T Consensus 51 L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l------------------~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 51 IIANNSDIKSVQGIQYLPNVTKLFLNGNKL------------------TDIKP-LANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCC------------------CCCGG-GTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred EEccCCCcccChhHhcCCCCCEEEccCCcc------------------CCCcc-cccCCCCCEEECCCCcCCCChh-hcc
Confidence 334444555566666667777777766554 44443 6666777777777776666554 666
Q ss_pred CccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccccc
Q 004021 558 LEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAV 637 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 637 (779)
+++|++|++++| .+..++. +..+++|++|++++|.+.. +..+..+++|+.|+++.|...
T Consensus 111 l~~L~~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L~~L~L~~N~l~-- 169 (291)
T 1h6t_A 111 LKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITD----------------ITVLSRLTKLDTLSLEDNQIS-- 169 (291)
T ss_dssp CTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------CGGGGGCTTCSEEECCSSCCC--
T ss_pred CCCCCEEECCCC-cCCCChh--hcCCCCCCEEEccCCcCCc----------------chhhccCCCCCEEEccCCccc--
Confidence 777777777776 4555543 6667777777777666553 134556666777776644322
Q ss_pred ccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCC
Q 004021 638 QKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYG 705 (779)
Q Consensus 638 ~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (779)
.+. .+..+++|+.|+|++|. +..+ ..+..+++|+.|+++++
T Consensus 170 -------~~~--~l~~l~~L~~L~L~~N~-i~~l-----------------~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 170 -------DIV--PLAGLTKLQNLYLSKNH-ISDL-----------------RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -------CCG--GGTTCTTCCEEECCSSC-CCBC-----------------GGGTTCTTCSEEEEEEE
T ss_pred -------cch--hhcCCCccCEEECCCCc-CCCC-----------------hhhccCCCCCEEECcCC
Confidence 221 14556677777776653 2222 13455677777777663
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.5e-13 Score=134.66 Aligned_cols=79 Identities=32% Similarity=0.463 Sum_probs=36.0
Q ss_pred ccccccccccccch-hhcccccCceeeecCCcccccchh-hccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 517 LSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 517 L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
|++++| .+..+|. .+.++++|++|++++|.++.+|.. +.++++|++|++++| .++.+|...++++++|++|++++|
T Consensus 33 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 33 LDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC
Confidence 444444 4444432 234445555555555544444433 344455555555544 344444433344455555555444
Q ss_pred cCC
Q 004021 595 GSE 597 (779)
Q Consensus 595 ~~~ 597 (779)
.+.
T Consensus 111 ~l~ 113 (208)
T 2o6s_A 111 QLQ 113 (208)
T ss_dssp CCC
T ss_pred cCc
Confidence 443
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.3e-13 Score=135.04 Aligned_cols=176 Identities=16% Similarity=0.164 Sum_probs=134.9
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchh-hccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
++++++ .+..+|..+ ..+|++|++++|.++.+|.. +.++++|++|++++| .++.+|...+..+++|++|++++|.
T Consensus 12 v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 12 VECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 344555 677777655 46899999999999998875 789999999999999 6788888767899999999999998
Q ss_pred CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccc
Q 004021 596 SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVD 675 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 675 (779)
+.. .....+..+++|+.|+++.|. +..+.+..+..+++|+.|+|++|. +..++.
T Consensus 88 l~~--------------~~~~~~~~l~~L~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~-- 141 (208)
T 2o6s_A 88 LQS--------------LPNGVFDKLTQLKELALNTNQ---------LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPD-- 141 (208)
T ss_dssp CCC--------------CCTTTTTTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT--
T ss_pred CCc--------------cCHhHhcCccCCCEEEcCCCc---------CcccCHhHhccCCcCCEEECCCCc-cceeCH--
Confidence 875 223346788999999998553 444444557788999999999964 444443
Q ss_pred cccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCCCCCCCCCCCCc
Q 004021 676 KLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPKLKKLPINSSSA 742 (779)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~L~~lP~~~~~~ 742 (779)
..+..+++|+.|++++++- .+.+++|+.|.++.+..-..+|..+...
T Consensus 142 -------------~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 142 -------------GVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -------------TTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -------------HHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHHHhCCceeeccCccc
Confidence 3567889999999998632 2456889999888877666788766543
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=4.7e-14 Score=149.59 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=119.1
Q ss_pred CCccEEEcccccccccccC----cc--cccccccccccc--cchhhcccccCceeeecCCccc-ccchhhccCccCcEee
Q 004021 495 EGAKRISLMANEIESLSEI----PT--LLSLRRNDSLTE--LPSRISSLVSLHHLDLSLTHIR-GLPQELKALEKLRYLN 565 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~----~~--lL~L~~~~~l~~--lp~~i~~L~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~ 565 (779)
..++.+++.+|.+...+.. +. .|+|++| .+.. +|..+.++++|++|++++|.++ ..|..++++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5677777777666544322 11 3777777 5553 5666777777777777777665 3566677777777777
Q ss_pred ccCCcCCC--CCchhhhcCCccCcEeeeccc-cCCCcccccCCccCCCchhhHHhhcCCC-CCCceeEEeecccccccCC
Q 004021 566 LEYTHYLS--IIPHQLISGFLKLEVLRLLEC-GSEGVTKEEGNVLCDDAEPLMRELLGLK-RLNVLSWSFRSSLAVQKFF 641 (779)
Q Consensus 566 l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~~~~~~ 641 (779)
+++|..++ .+|.. +.++++|++|++++| .+.. ...+..+..++ +|+.|+++++..
T Consensus 149 L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~-------------~~~~~~~~~l~~~L~~L~l~~~~~------- 207 (336)
T 2ast_B 149 LSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE-------------KHVQVAVAHVSETITQLNLSGYRK------- 207 (336)
T ss_dssp CTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH-------------HHHHHHHHHSCTTCCEEECCSCGG-------
T ss_pred CCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh-------------HHHHHHHHhcccCCCEEEeCCCcc-------
Confidence 77774444 24543 666777777777777 5542 22445566667 777777765421
Q ss_pred CCCcc-cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc-CCCCCCC
Q 004021 642 KYPKL-DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY-PNPLHFP 719 (779)
Q Consensus 642 ~L~~L-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~ 719 (779)
++..- .+..+..+++|+.|+|++|..+..... ..+..+++|+.|++++|..+.... ..+..++
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~---------------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---------------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---------------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH---------------HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 00000 022345677888888888764332111 245567888888888775332211 1345678
Q ss_pred CccEEeeeCC
Q 004021 720 KLKKIGVYGC 729 (779)
Q Consensus 720 ~L~~L~l~~c 729 (779)
+|++|++++|
T Consensus 273 ~L~~L~l~~~ 282 (336)
T 2ast_B 273 TLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeccCc
Confidence 8888888877
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.9e-13 Score=155.24 Aligned_cols=99 Identities=30% Similarity=0.324 Sum_probs=44.6
Q ss_pred ccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeecc
Q 004021 493 EWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLE 567 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~ 567 (779)
.+..++.|++.+|.+..++.... .|+|++| .+..+|. +++|++|++|+|++|.++.+| .+.+|++|++|+|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 34455555555555544432211 1444444 4444433 444444444444444444443 34444444444444
Q ss_pred CCcCCCCCchhhhcCCccCcEeeeccccCC
Q 004021 568 YTHYLSIIPHQLISGFLKLEVLRLLECGSE 597 (779)
Q Consensus 568 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 597 (779)
+| .+..+|. +..|++|+.|++++|.+.
T Consensus 118 ~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 118 HN-GISDING--LVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp TS-CCCCCGG--GGGCTTCSEEECCSSCCC
T ss_pred CC-CCCCCcc--ccCCCccCEEECCCCccC
Confidence 44 3333332 444444444444444433
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=1.6e-13 Score=155.80 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=122.9
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
|+|++| .+..+| .+..|++|++|+|++|.+..+|. +.+|++|++|+|++| .+..+|. +..+++|++|++++|.+
T Consensus 48 L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 48 IIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp CBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTT--STTCTTCCEEECTTSCC
T ss_pred EECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChh--hccCCCCCEEEecCCCC
Confidence 788888 888887 58889999999999998888876 888999999999988 6777774 88899999999988877
Q ss_pred CCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccccc
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDK 676 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 676 (779)
.. +..+..|++|+.|+++.|... .+ +.+..+++|+.|+|++|... .++
T Consensus 122 ~~----------------l~~l~~l~~L~~L~Ls~N~l~---------~l--~~l~~l~~L~~L~Ls~N~l~-~~~---- 169 (605)
T 1m9s_A 122 SD----------------INGLVHLPQLESLYLGNNKIT---------DI--TVLSRLTKLDTLSLEDNQIS-DIV---- 169 (605)
T ss_dssp CC----------------CGGGGGCTTCSEEECCSSCCC---------CC--GGGGSCTTCSEEECCSSCCC-CCG----
T ss_pred CC----------------CccccCCCccCEEECCCCccC---------Cc--hhhcccCCCCEEECcCCcCC-Cch----
Confidence 64 235777888888888855432 22 45667788888888886532 221
Q ss_pred ccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCC
Q 004021 677 LRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (779)
.+..+++|+.|+|+++ .+..++ .+..+++|+.|++++|+
T Consensus 170 -------------~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 170 -------------PLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -------------GGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred -------------hhccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 2567788888888874 566664 46678888888888764
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=2.8e-13 Score=137.84 Aligned_cols=74 Identities=24% Similarity=0.251 Sum_probs=34.8
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
|++++| .+..+| .++.+++|++|++++|.++.+|. +.++++|++|++++| .++.+|. +.. ++|++|++++|.+
T Consensus 46 L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~--~~~-~~L~~L~L~~N~l 118 (263)
T 1xeu_A 46 FNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNG--IPS-ACLSRLFLDNNEL 118 (263)
T ss_dssp EECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTT--CCC-SSCCEEECCSSCC
T ss_pred EECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCc--ccc-CcccEEEccCCcc
Confidence 444444 444444 44444555555555554444444 444455555555544 3444443 222 4455555544444
Q ss_pred C
Q 004021 597 E 597 (779)
Q Consensus 597 ~ 597 (779)
.
T Consensus 119 ~ 119 (263)
T 1xeu_A 119 R 119 (263)
T ss_dssp S
T ss_pred C
Confidence 3
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=3.4e-14 Score=153.80 Aligned_cols=212 Identities=17% Similarity=0.128 Sum_probs=126.2
Q ss_pred ccCCccEEEccccccccc---------ccCcc--ccccccccccc----ccchhh-------cccccCceeeecCCcccc
Q 004021 493 EWEGAKRISLMANEIESL---------SEIPT--LLSLRRNDSLT----ELPSRI-------SSLVSLHHLDLSLTHIRG 550 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~l---------~~~~~--lL~L~~~~~l~----~lp~~i-------~~L~~L~~L~L~~~~i~~ 550 (779)
..+.++.|++++|.+... ...+. .|+|++| .+. .+|..+ .++++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 345677888877766542 11222 3777776 443 234443 677888888888887766
Q ss_pred -----cchhhccCccCcEeeccCCcCCCC-----CchhhhcCC---------ccCcEeeeccccCCCcccccCCccCCCc
Q 004021 551 -----LPQELKALEKLRYLNLEYTHYLSI-----IPHQLISGF---------LKLEVLRLLECGSEGVTKEEGNVLCDDA 611 (779)
Q Consensus 551 -----lp~~~~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 611 (779)
+|..+.++++|++|+|++|. +.. ++.. +..+ ++|++|++++|.+.. ...
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~----------~~~ 176 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLEN----------GSM 176 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTG----------GGH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCc----------HHH
Confidence 67778888888888888883 432 2222 3333 788888888877652 000
Q ss_pred hhhHHhhcCCCCCCceeEEeeccc----------ccccCCCCCccc--------------CcccccccCcceEEeccccc
Q 004021 612 EPLMRELLGLKRLNVLSWSFRSSL----------AVQKFFKYPKLD--------------LTWLVFVQNLKELEIIVCTE 667 (779)
Q Consensus 612 ~~~~~~l~~L~~L~~L~l~~~~~~----------~~~~~~~L~~L~--------------~~~l~~l~~L~~L~L~~~~~ 667 (779)
......+..+++|+.|+++.|... .+..+++|+.|. +..+..+++|+.|+|++|..
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 112245666777777777766554 233445555551 22355677788888877653
Q ss_pred cceecccccccCcccchhhccCCC--CCCCCccEEEccCCCCCcc-----ccCCC-CCCCCccEEeeeCCC
Q 004021 668 MEEIICVDKLRDVSDISEIIGSEH--NFFTQLESLGILYGPDLKS-----IYPNP-LHFPKLKKIGVYGCP 730 (779)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~ 730 (779)
...... .++ ..+ +.+++|+.|+|++| .+.. ++..+ ..+|+|++|++++|+
T Consensus 257 ~~~~~~--------~l~----~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 257 SARGAA--------AVV----DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CHHHHH--------HHH----HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred chhhHH--------HHH----HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 221000 000 122 34778888888875 4444 55544 457888888888775
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=3.4e-13 Score=133.25 Aligned_cols=144 Identities=18% Similarity=0.262 Sum_probs=106.6
Q ss_pred cEEEcccccccccccCcc----cccccccccccccch-hhcccccCceeeecCCccccc-chhhccCccCcEeeccCCcC
Q 004021 498 KRISLMANEIESLSEIPT----LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 498 r~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~ 571 (779)
+.+++.++.+..+|...+ .|+|++| .+..+|. .|.++++|++|+|++|.++.+ |..|.++++|++|+|++| .
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 456777777777665322 4788888 7777754 678888888888888888886 667888888888888888 6
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCccc
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWL 651 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l 651 (779)
++.+|.+.+.++++|++|++++|.+.. ..+..+..+++|+.|+++.|. ++.+.+..+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~N~---------l~~~~~~~~ 148 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINC--------------LRVDAFQDLHNLNLLSLYDNK---------LQTIAKGTF 148 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCSSC---------CSCCCTTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCE--------------eCHHHcCCCCCCCEEECCCCc---------CCEECHHHH
Confidence 788888767888888888888888774 234456777888888887443 334434456
Q ss_pred ccccCcceEEecccc
Q 004021 652 VFVQNLKELEIIVCT 666 (779)
Q Consensus 652 ~~l~~L~~L~L~~~~ 666 (779)
..+++|+.|+|++|+
T Consensus 149 ~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCCCCCEEEeCCCC
Confidence 667788888887754
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=3.6e-13 Score=133.08 Aligned_cols=145 Identities=16% Similarity=0.204 Sum_probs=109.5
Q ss_pred cEEEcccccccccccCcc----cccccccccccccch--hhcccccCceeeecCCcccccch-hhccCccCcEeeccCCc
Q 004021 498 KRISLMANEIESLSEIPT----LLSLRRNDSLTELPS--RISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTH 570 (779)
Q Consensus 498 r~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~ 570 (779)
+.+++++|.+..+|.... .|+|++| .+..++. .|.++++|++|+|++|.|+.+|. .|.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence 578888888887775432 4888888 8887733 37888899999999988888766 6888889999999988
Q ss_pred CCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcc
Q 004021 571 YLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTW 650 (779)
Q Consensus 571 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~ 650 (779)
.+..+|++.++.+++|++|++++|.+.. ..+..+..+++|+.|+++.| +++.+.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~~l~~L~~L~L~~N---------~l~~~~~~~ 148 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITC--------------VGNDSFIGLSSVRLLSLYDN---------QITTVAPGA 148 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCC--------------BCTTSSTTCTTCSEEECTTS---------CCCCBCTTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCe--------------ECHhHcCCCccCCEEECCCC---------cCCEECHHH
Confidence 5777777668888999999998888775 23455677788888888743 344444556
Q ss_pred cccccCcceEEeccccc
Q 004021 651 LVFVQNLKELEIIVCTE 667 (779)
Q Consensus 651 l~~l~~L~~L~L~~~~~ 667 (779)
+..+++|+.|+|++|+.
T Consensus 149 ~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTTCTTCCEEECCSCCE
T ss_pred hcCCCCCCEEEecCcCC
Confidence 67778888888887653
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=2.1e-11 Score=130.14 Aligned_cols=275 Identities=13% Similarity=0.134 Sum_probs=162.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEech-----------HHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQT-----------FQDD 223 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~-----------i~~~ 223 (779)
..|+||+++++.|.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+.+.. +...
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHH
Confidence 678999999999999 653 699999999999999999999876 22 246777621 2233
Q ss_pred HHHHhC--------------CC----c-c--hhh-----hhcchhhHHHHHHHhhCCCcceeehhhcccccc--------
Q 004021 224 IGKRIG--------------FS----E-D--KKW-----KEKSLQDKAVDISSILSPKKFRIDLTELGVPLQ-------- 269 (779)
Q Consensus 224 i~~~l~--------------~~----~-~--~~~-----~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~~~-------- 269 (779)
+.+.+. .. . . ... ...........+.+.-+ ++..+++|++.....
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 332221 00 0 0 000 01123333444433322 377777777633110
Q ss_pred ------ccCCCcEEEEEeCchhhhhh----------c-C--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHH
Q 004021 270 ------MLNAGFKIVLKTRSAGVCDQ----------M-D--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAET 330 (779)
Q Consensus 270 ------~~~~gs~IivTTR~~~va~~----------~-~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~ 330 (779)
....+.++|+|+|....... . + ...+.+.+|+.+++.+++...+....... .. . ..
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~---~-~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD---Y-EV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC---H-HH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc---H-HH
Confidence 11247889999997653221 1 1 25789999999999999988654322111 11 1 88
Q ss_pred HHHHhCCChhHHHHHHHHhcCCCChhHHHHHHHHHhcccCcCCCchHHHHHHHH-HHHh--cCCccchhhhhhhccccCC
Q 004021 331 LARECGRLPLALKTVGRAMKSQKKVGDRERAIEKMRTSASTFSGMEENVFLRLK-FSYD--SLSMDKLRSCLLYCCLYPE 407 (779)
Q Consensus 331 I~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~k~cf~~~s~fp~ 407 (779)
|++.|+|+|+++..++..+....+...|.. .+... ....+...+. +.+. .+++ ..+..+..+|.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~--- 301 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEY------AKKLILKEFENFLHGREIARK-RYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHH------HHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHH------HHHHHHHHHHHHhhccccccH-HHHHHHHHHHc---
Confidence 999999999999999877643333333322 11000 0001222222 1111 5777 78888888887
Q ss_pred CcccChHHHHHHHH-HcCCCcchhhHHHHHHHHHHcccccccCCCcEE-echHHHHHH
Q 004021 408 DYKIPKRSLIDYWI-SEGFMADFDRGCEFINDLLHACLLEEEGDDHVK-MHDMIREMS 463 (779)
Q Consensus 408 ~~~i~~~~Li~~W~-a~g~~~~~~~~~~~l~~L~~~sll~~~~~~~~~-mHdlv~~~a 463 (779)
+. +...+..... ..|.-.+......+++.|.+.+++...+ +.|+ -|++++++.
T Consensus 302 g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 22 4444433221 1231012256678899999999998764 4566 578888764
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.42 E-value=4.7e-13 Score=154.92 Aligned_cols=142 Identities=20% Similarity=0.178 Sum_probs=92.0
Q ss_pred EEcccccccccccCc----ccccccccccccccc-hhhcccccCceeeecCCcccccch-hhccCccCcEeeccCCcCCC
Q 004021 500 ISLMANEIESLSEIP----TLLSLRRNDSLTELP-SRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTHYLS 573 (779)
Q Consensus 500 l~l~~~~~~~l~~~~----~lL~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~l~ 573 (779)
.+.++.++..+|... ..|||++| .|+.+| .+|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++| .++
T Consensus 36 ~~c~~~~l~~vP~~lp~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~ 113 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 113 (635)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred EECCCCCcCccCCCCCcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCC
Confidence 344444555555432 24777777 777774 467777777777777777777755 4777777777777777 567
Q ss_pred CCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcc-cCcccc
Q 004021 574 IIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKL-DLTWLV 652 (779)
Q Consensus 574 ~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L-~~~~l~ 652 (779)
.+|++.|.+|++|++|++++|.+..+ ....+++|++|+.|+++.|. ++.+ .+..++
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l--------------~~~~~~~L~~L~~L~Ls~N~---------l~~~~~~~~~~ 170 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASL--------------ENFPIGHLKTLKELNVAHNL---------IQSFKLPEYFS 170 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCS--------------TTCCCTTCTTCCEEECCSSC---------CCCCCCCGGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCC--------------ChhhhhcCcccCeeccccCc---------cccCCCchhhc
Confidence 77766677777777777777776641 22236677777777777443 2222 134456
Q ss_pred cccCcceEEecccc
Q 004021 653 FVQNLKELEIIVCT 666 (779)
Q Consensus 653 ~l~~L~~L~L~~~~ 666 (779)
.+++|++|++++|.
T Consensus 171 ~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 171 NLTNLEHLDLSSNK 184 (635)
T ss_dssp GCTTCCEEECCSSC
T ss_pred cchhhhhhcccCcc
Confidence 67777777777754
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=7e-13 Score=141.18 Aligned_cols=200 Identities=15% Similarity=0.105 Sum_probs=146.1
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccch-hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEe-eeccc
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVL-RLLEC 594 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L-~l~~~ 594 (779)
++.+++ .++.+|..| ..++++|+|++|+|+.+|. .|.+|++|++|+|++|..++.+|.+.+.++++|+++ .+.+|
T Consensus 14 v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 567777 899999877 4689999999999999997 489999999999999966677888778899998865 44556
Q ss_pred cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCC----------------CCCcccCcccccc-cCc
Q 004021 595 GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFF----------------KYPKLDLTWLVFV-QNL 657 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~----------------~L~~L~~~~l~~l-~~L 657 (779)
.+.. ..+..+..+++|+.|+++.|....+.... ++..+....+..+ ..|
T Consensus 91 ~l~~--------------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 91 NLLY--------------INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp TCCE--------------ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cccc--------------cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 6653 33456889999999999998775542211 1222222233333 357
Q ss_pred ceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCC-CCCCCCccEEeeeCCCCCCCCC
Q 004021 658 KELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPN-PLHFPKLKKIGVYGCPKLKKLP 736 (779)
Q Consensus 658 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~L~~lP 736 (779)
+.|+|++| .++.++. .....++|+.|.+.+++.++.+|.. +..+++|+.|+++++ +++.+|
T Consensus 157 ~~L~L~~N-~i~~i~~----------------~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 157 VILWLNKN-GIQEIHN----------------SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp EEEECCSS-CCCEECT----------------TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred hhhccccc-cccCCCh----------------hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence 77777774 3455544 3334578999999988899999875 468999999999987 699999
Q ss_pred CCCCCcccccEEEech
Q 004021 737 INSSSAKERRVVIEGL 752 (779)
Q Consensus 737 ~~~~~~~~~~l~i~~~ 752 (779)
...- ..++.+.+.++
T Consensus 219 ~~~~-~~L~~L~~l~~ 233 (350)
T 4ay9_X 219 SYGL-ENLKKLRARST 233 (350)
T ss_dssp SSSC-TTCCEEECTTC
T ss_pred hhhh-ccchHhhhccC
Confidence 7542 23455555544
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=5.6e-13 Score=139.44 Aligned_cols=193 Identities=17% Similarity=0.122 Sum_probs=140.3
Q ss_pred CCccEEEcccccccccc-cC------cc--ccccccccccccc-c----hhhcccccCceeeecCCcccccc-hhhccCc
Q 004021 495 EGAKRISLMANEIESLS-EI------PT--LLSLRRNDSLTEL-P----SRISSLVSLHHLDLSLTHIRGLP-QELKALE 559 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~-~~------~~--lL~L~~~~~l~~l-p----~~i~~L~~L~~L~L~~~~i~~lp-~~~~~L~ 559 (779)
..+++|++++|.+.... .. .. .|+|++| .+... | ..+..+++|++|+|++|.+..+| ..+++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 46899999998876432 22 11 3899999 77652 3 34568999999999999998876 5789999
Q ss_pred cCcEeeccCCcCCCC--Cchh-hhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHh-hcCCCCCCceeEEeeccc
Q 004021 560 KLRYLNLEYTHYLSI--IPHQ-LISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRE-LLGLKRLNVLSWSFRSSL 635 (779)
Q Consensus 560 ~L~~L~l~~~~~l~~--lp~~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~l~~~~~~ 635 (779)
+|++|++++|..... ++.. .++.+++|++|++++|.+..+ ...+.. ++.+++|++|+++.|..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l------------~~~~~~l~~~l~~L~~L~Ls~N~l- 236 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP------------TGVCAALAAAGVQPHSLDLSHNSL- 236 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH------------HHHHHHHHHHTCCCSSEECTTSCC-
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch------------HHHHHHHHhcCCCCCEEECCCCCC-
Confidence 999999999943221 3322 146899999999999988641 122222 46789999999996553
Q ss_pred ccccCCCCCcccCccccc---ccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc
Q 004021 636 AVQKFFKYPKLDLTWLVF---VQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY 712 (779)
Q Consensus 636 ~~~~~~~L~~L~~~~l~~---l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (779)
..+.|+.+.. +++|++|+|++|.. +.++. .+ +++|+.|++++ +.+..+|
T Consensus 237 --------~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp~----------------~~--~~~L~~L~Ls~-N~l~~~~ 288 (310)
T 4glp_A 237 --------RATVNPSAPRCMWSSALNSLNLSFAGL-EQVPK----------------GL--PAKLRVLDLSS-NRLNRAP 288 (310)
T ss_dssp --------CCCCCSCCSSCCCCTTCCCEECCSSCC-CSCCS----------------CC--CSCCSCEECCS-CCCCSCC
T ss_pred --------CccchhhHHhccCcCcCCEEECCCCCC-Cchhh----------------hh--cCCCCEEECCC-CcCCCCc
Confidence 3332333333 37999999999654 45543 22 48999999998 5777776
Q ss_pred CCCCCCCCccEEeeeCCC
Q 004021 713 PNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 713 ~~~~~l~~L~~L~l~~c~ 730 (779)
. ...+++|+.|++++++
T Consensus 289 ~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-TTSCCCCSCEECSSTT
T ss_pred h-hhhCCCccEEECcCCC
Confidence 5 5788999999999875
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=6.3e-13 Score=131.28 Aligned_cols=147 Identities=18% Similarity=0.273 Sum_probs=103.1
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccch-hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
.++++++ .++.+|..+. .+|+.|++++|.|+.+|. .|.++++|++|+|++| .+..++++.+.++++|++|++++|
T Consensus 15 ~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 3678888 8888887765 688999999999988876 6888999999999998 567664444888999999999988
Q ss_pred cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccc
Q 004021 595 GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICV 674 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 674 (779)
.+..++ ...+..+++|+.|+++.| .++.+.+..+..+++|+.|+|++|. +..++.
T Consensus 91 ~l~~l~--------------~~~f~~l~~L~~L~L~~N---------~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~- 145 (220)
T 2v9t_B 91 KITELP--------------KSLFEGLFSLQLLLLNAN---------KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAK- 145 (220)
T ss_dssp CCCCCC--------------TTTTTTCTTCCEEECCSS---------CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-
T ss_pred cCCccC--------------HhHccCCCCCCEEECCCC---------CCCEeCHHHcCCCCCCCEEECCCCc-CCEECH-
Confidence 877522 223556777777777743 3333444556667777777777744 333332
Q ss_pred ccccCcccchhhccCCCCCCCCccEEEccCC
Q 004021 675 DKLRDVSDISEIIGSEHNFFTQLESLGILYG 705 (779)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (779)
..+..+++|+.|+|+++
T Consensus 146 --------------~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 146 --------------GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp --------------TTTTTCTTCCEEECCSS
T ss_pred --------------HHHhCCCCCCEEEeCCC
Confidence 24556677777777663
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=1.3e-13 Score=146.09 Aligned_cols=205 Identities=16% Similarity=0.111 Sum_probs=147.4
Q ss_pred cccccCCccEEEcccccccc--ccc----Ccc--ccccccccccc-ccchhhcccccCceeeecCC-cccc--cchhhcc
Q 004021 490 KVKEWEGAKRISLMANEIES--LSE----IPT--LLSLRRNDSLT-ELPSRISSLVSLHHLDLSLT-HIRG--LPQELKA 557 (779)
Q Consensus 490 ~~~~~~~lr~l~l~~~~~~~--l~~----~~~--lL~L~~~~~l~-~lp~~i~~L~~L~~L~L~~~-~i~~--lp~~~~~ 557 (779)
....+.++++|++++|.+.. ++. .+. .|+|++| .+. ..|..++++++|++|++++| .++. +|..+.+
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 34567899999999998753 332 222 3999999 776 46889999999999999999 6874 7888999
Q ss_pred CccCcEeeccCCcCCCC--CchhhhcCCc-cCcEeeecccc--CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEee
Q 004021 558 LEKLRYLNLEYTHYLSI--IPHQLISGFL-KLEVLRLLECG--SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFR 632 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~--lp~~~i~~L~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 632 (779)
+++|++|++++|..++. ++.. +..++ +|++|++++|. +.. ...+..+..+++|+.|+++.+
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~-------------~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQK-------------SDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCH-------------HHHHHHHHHCTTCSEEECTTC
T ss_pred CCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCCH-------------HHHHHHHhhCCCCCEEeCCCC
Confidence 99999999999955554 5664 88999 99999999984 331 345666778999999999855
Q ss_pred cccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCcccc
Q 004021 633 SSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIY 712 (779)
Q Consensus 633 ~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (779)
.. +..-.+..+..+++|++|+|++|..+..... ..+..+++|+.|++++| ++
T Consensus 233 ~~--------l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------~~l~~~~~L~~L~l~~~-----i~ 284 (336)
T 2ast_B 233 VM--------LKNDCFQEFFQLNYLQHLSLSRCYDIIPETL---------------LELGEIPTLKTLQVFGI-----VP 284 (336)
T ss_dssp TT--------CCGGGGGGGGGCTTCCEEECTTCTTCCGGGG---------------GGGGGCTTCCEEECTTS-----SC
T ss_pred Cc--------CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH---------------HHHhcCCCCCEEeccCc-----cC
Confidence 31 2222345678889999999999863321100 24667999999999987 33
Q ss_pred C-CCCCC-CCccEEeeeCCCCCCC-CCCC
Q 004021 713 P-NPLHF-PKLKKIGVYGCPKLKK-LPIN 738 (779)
Q Consensus 713 ~-~~~~l-~~L~~L~l~~c~~L~~-lP~~ 738 (779)
. .+..+ .+|+.|+++ |+++.. .|..
T Consensus 285 ~~~~~~l~~~l~~L~l~-~n~l~~~~~~~ 312 (336)
T 2ast_B 285 DGTLQLLKEALPHLQIN-CSHFTTIARPT 312 (336)
T ss_dssp TTCHHHHHHHSTTSEES-CCCSCCTTCSS
T ss_pred HHHHHHHHhhCcceEEe-cccCccccCCc
Confidence 2 12222 235556675 455665 4443
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=7.1e-13 Score=130.91 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=117.2
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccch--hhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ--ELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLE 593 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 593 (779)
.+++++| .++.+|..+. ..+++|+|++|.++.++. .|.++++|++|++++| .++.++++.+.++++|++|++++
T Consensus 15 ~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 3889999 8999998775 457899999999999853 3899999999999999 67888876699999999999999
Q ss_pred ccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecc
Q 004021 594 CGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIIC 673 (779)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~ 673 (779)
|.+.. ..+..+..+++|+.|+++.| +++.+.+..+..+++|+.|+|++|.. ..++.
T Consensus 91 N~l~~--------------~~~~~~~~l~~L~~L~Ls~N---------~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~ 146 (220)
T 2v70_A 91 NRLEN--------------VQHKMFKGLESLKTLMLRSN---------RITCVGNDSFIGLSSVRLLSLYDNQI-TTVAP 146 (220)
T ss_dssp SCCCC--------------CCGGGGTTCSSCCEEECTTS---------CCCCBCTTSSTTCTTCSEEECTTSCC-CCBCT
T ss_pred CccCc--------------cCHhHhcCCcCCCEEECCCC---------cCCeECHhHcCCCccCCEEECCCCcC-CEECH
Confidence 98875 33445778899999998844 44455556677888999999998654 44433
Q ss_pred cccccCcccchhhccCCCCCCCCccEEEccCCC
Q 004021 674 VDKLRDVSDISEIIGSEHNFFTQLESLGILYGP 706 (779)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 706 (779)
..+..+++|+.|+|++++
T Consensus 147 ---------------~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 147 ---------------GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ---------------TTTTTCTTCCEEECCSCC
T ss_pred ---------------HHhcCCCCCCEEEecCcC
Confidence 367788899999998743
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=1.1e-12 Score=130.55 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=29.2
Q ss_pred ccCceeeecCCccccc-chhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCC
Q 004021 536 VSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSE 597 (779)
Q Consensus 536 ~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 597 (779)
++|++|+|++|.++.+ |..+.++++|++|+|++| .++.+|...+..+++|++|++++|.+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCC
Confidence 4455555555554444 333445555555555555 344444443444555555555544443
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=1.5e-12 Score=146.05 Aligned_cols=184 Identities=20% Similarity=0.165 Sum_probs=123.8
Q ss_pred CccEEEcccccccccccCcc----cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~ 571 (779)
+++.|++.+|.+..+|.... .|+|++| .++.+| ..+++|++|+|++|.++.+|. +.+ +|++|++++| .
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-Q 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-C
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-c
Confidence 67788888888777765322 4888888 888888 457888888888888888887 665 8888888888 5
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCccc
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWL 651 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l 651 (779)
++.+|. .+++|++|++++|.+.++| . .+++|+.|+++.|... .+ +. +
T Consensus 132 l~~lp~----~l~~L~~L~Ls~N~l~~lp---------------~---~l~~L~~L~Ls~N~L~---------~l-p~-l 178 (571)
T 3cvr_A 132 LTMLPE----LPALLEYINADNNQLTMLP---------------E---LPTSLEVLSVRNNQLT---------FL-PE-L 178 (571)
T ss_dssp CSCCCC----CCTTCCEEECCSSCCSCCC---------------C---CCTTCCEEECCSSCCS---------CC-CC-C
T ss_pred CCCCCC----cCccccEEeCCCCccCcCC---------------C---cCCCcCEEECCCCCCC---------Cc-ch-h
Confidence 677776 5788888888888776421 1 4678888888855433 22 11 3
Q ss_pred ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCccEEeeeCCCC
Q 004021 652 VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKLKKIGVYGCPK 731 (779)
Q Consensus 652 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 731 (779)
. ++|+.|+|++|. +..++. . .. .-....+.|+.|+|++ +.++.+|..+..+++|+.|++++|+-
T Consensus 179 ~--~~L~~L~Ls~N~-L~~lp~-~-~~----------~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 179 P--ESLEALDVSTNL-LESLPA-V-PV----------RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp C--TTCCEEECCSSC-CSSCCC-C-C------------------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred h--CCCCEEECcCCC-CCchhh-H-HH----------hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence 3 788888888864 334322 0 00 0011123338888887 46778888777788888888888764
Q ss_pred CCCCC
Q 004021 732 LKKLP 736 (779)
Q Consensus 732 L~~lP 736 (779)
-..+|
T Consensus 243 ~~~~p 247 (571)
T 3cvr_A 243 SSRIR 247 (571)
T ss_dssp CHHHH
T ss_pred CCcCH
Confidence 33333
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=4.1e-13 Score=143.62 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=124.5
Q ss_pred ccEEEcccccccccccCcc----cccccccccccccchh-hc-ccccCceeeecCCcccccch-hhccCccCcEeeccCC
Q 004021 497 AKRISLMANEIESLSEIPT----LLSLRRNDSLTELPSR-IS-SLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYT 569 (779)
Q Consensus 497 lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~~-i~-~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~ 569 (779)
.+.+++.++.+..+|...+ .|+|++| .++.+|.. +. ++.+|++|+|++|.|+.+|. .|.++++|++|+|++|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCSSCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3578888888888776433 5899999 88888655 55 89999999999999999875 5899999999999999
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCc
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLT 649 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~ 649 (779)
.++.+|...+..+++|++|++++|.+.. ..+..+..+++|+.|+++.|.. +.+...
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~--------------~~~~~~~~l~~L~~L~L~~N~l---------~~l~~~ 154 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHIVV--------------VDRNAFEDMAQLQKLYLSQNQI---------SRFPVE 154 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCE--------------ECTTTTTTCTTCCEEECCSSCC---------CSCCGG
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcccE--------------ECHHHhCCcccCCEEECCCCcC---------CeeCHH
Confidence 6788888768899999999999998774 3355678889999999986543 333222
Q ss_pred cc---ccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCC--ccEEEccCC
Q 004021 650 WL---VFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQ--LESLGILYG 705 (779)
Q Consensus 650 ~l---~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~ 705 (779)
.+ ..+++|+.|+|++|. +..++. ..+..+++ |+.|+|.++
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~-l~~l~~---------------~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNK-LKKLPL---------------TDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp GTC----CTTCCEEECCSSC-CCCCCH---------------HHHHHSCHHHHTTEECCSS
T ss_pred HhcCcccCCcCCEEECCCCC-CCccCH---------------HHhhhccHhhcceEEecCC
Confidence 33 568899999999854 444433 13344554 366777763
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.3e-12 Score=126.65 Aligned_cols=142 Identities=17% Similarity=0.245 Sum_probs=106.7
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCC-CchhhhcCCccCcEeeecccc
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSI-IPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~-lp~~~i~~L~~L~~L~l~~~~ 595 (779)
|++++| .+..+| .+..+++|++|++++|.++.++ .+.++++|++|++++| .+.. .|.. ++++++|++|++++|.
T Consensus 49 L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 49 ITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK-DVTSDKIPN-LSGLTSLTLLDISHSA 123 (197)
T ss_dssp EEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCC-CTTCTTCCEEECCSSB
T ss_pred EeccCC-CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECC-ccCcccChh-hcCCCCCCEEEecCCc
Confidence 344455 566677 6888899999999999887775 6888999999999998 4554 5554 8899999999999988
Q ss_pred CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccc
Q 004021 596 SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVD 675 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 675 (779)
+.. ..+..++.+++|+.|+++.|.. +..+ +.+..+++|+.|++++|.. ..+
T Consensus 124 i~~--------------~~~~~l~~l~~L~~L~L~~n~~--------i~~~--~~l~~l~~L~~L~l~~n~i-~~~---- 174 (197)
T 4ezg_A 124 HDD--------------SILTKINTLPKVNSIDLSYNGA--------ITDI--MPLKTLPELKSLNIQFDGV-HDY---- 174 (197)
T ss_dssp CBG--------------GGHHHHTTCSSCCEEECCSCTB--------CCCC--GGGGGCSSCCEEECTTBCC-CCC----
T ss_pred cCc--------------HhHHHHhhCCCCCEEEccCCCC--------cccc--HhhcCCCCCCEEECCCCCC-cCh----
Confidence 763 4567788899999999886540 2222 3577889999999998653 332
Q ss_pred cccCcccchhhccCCCCCCCCccEEEccCC
Q 004021 676 KLRDVSDISEIIGSEHNFFTQLESLGILYG 705 (779)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (779)
..+..+++|+.|+++++
T Consensus 175 -------------~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 175 -------------RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp -------------TTGGGCSSCCEEEECBC
T ss_pred -------------HHhccCCCCCEEEeeCc
Confidence 24567899999999874
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=5e-13 Score=142.96 Aligned_cols=174 Identities=19% Similarity=0.138 Sum_probs=121.1
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccchh-hc-cCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQE-LK-ALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLE 593 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-~~-~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 593 (779)
.++++++ .++.+|..+. .++++|+|++|.|+.+|.. +. ++++|++|+|++| .+..+|++.+.++++|++|++++
T Consensus 22 ~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 4788888 8999998765 4689999999999998766 44 8999999999999 67888876688999999999999
Q ss_pred ccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecc
Q 004021 594 CGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIIC 673 (779)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~ 673 (779)
|.+.. .....+..+++|+.|+++.|. +..+.+..+..+++|+.|+|++|. +..++.
T Consensus 98 N~l~~--------------~~~~~~~~l~~L~~L~L~~N~---------i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~ 153 (361)
T 2xot_A 98 NHLHT--------------LDEFLFSDLQALEVLLLYNNH---------IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPV 153 (361)
T ss_dssp SCCCE--------------ECTTTTTTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSC-CCSCCG
T ss_pred CcCCc--------------CCHHHhCCCcCCCEEECCCCc---------ccEECHHHhCCcccCCEEECCCCc-CCeeCH
Confidence 88764 223346778888888887443 444445567777888888888854 343433
Q ss_pred cccccCcccchhhccCCCCCCCCccEEEccCCCCCccccC-CCCCCCC--ccEEeeeCCC
Q 004021 674 VDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYP-NPLHFPK--LKKIGVYGCP 730 (779)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~--L~~L~l~~c~ 730 (779)
.. +..+..+++|+.|+|++ +.+..++. .+..++. |+.|++.++|
T Consensus 154 ~~------------~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 154 EL------------IKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp GG------------TC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred HH------------hcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 00 01124578888888887 46666653 2334554 3667776644
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=1.7e-12 Score=129.06 Aligned_cols=146 Identities=19% Similarity=0.242 Sum_probs=117.8
Q ss_pred CccEEEcccccccccccCcc----ccccccccccccc-chhhcccccCceeeecCCcccccchh-hccCccCcEeeccCC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYT 569 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~ 569 (779)
....++.+++.+..+|.... .|+|++| .+..+ |..|.++++|++|+|++|.++.+|.. +.++++|++|+|++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34567888888887776433 5999999 88887 77899999999999999999999865 689999999999999
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCc
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLT 649 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~ 649 (779)
.++.+|...+..+++|++|++++|.+.. .+..+..+++|+.|+++.|. ++.+...
T Consensus 99 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---------------lp~~~~~l~~L~~L~L~~N~---------l~~~~~~ 153 (229)
T 3e6j_A 99 -QLTVLPSAVFDRLVHLKELFMCCNKLTE---------------LPRGIERLTHLTHLALDQNQ---------LKSIPHG 153 (229)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCS---------------CCTTGGGCTTCSEEECCSSC---------CCCCCTT
T ss_pred -cCCccChhHhCcchhhCeEeccCCcccc---------------cCcccccCCCCCEEECCCCc---------CCccCHH
Confidence 6888888767899999999999998875 34556788899999988543 4444445
Q ss_pred ccccccCcceEEeccccc
Q 004021 650 WLVFVQNLKELEIIVCTE 667 (779)
Q Consensus 650 ~l~~l~~L~~L~L~~~~~ 667 (779)
.+..+++|+.|+|++|+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECTTSCB
T ss_pred HHhCCCCCCEEEeeCCCc
Confidence 567788899999988654
No 113
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.35 E-value=1.4e-11 Score=134.37 Aligned_cols=288 Identities=12% Similarity=0.057 Sum_probs=167.5
Q ss_pred ccccchhhhHHHHHHHH-hcc--C--CCceEEEE--EcCCCCcHHHHHHHHHhhhcccc---CCCC-EEEEEEe------
Q 004021 155 QTIVGQEKLLPRVWRCI-TDQ--Q--KNRGIIGL--YGIGGVGKTTLLKQVNNNFCHQQ---HNFD-VVIWAAV------ 217 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~gGvGKTtLA~~v~~~~~~~~---~~F~-~~~wv~v------ 217 (779)
..|+||+++++++.+++ ... . ...+.+.| +|++|+||||||+.+++.. ... ..|+ .++|+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 67999999999999998 531 1 23456666 9999999999999999876 211 1222 3567765
Q ss_pred chHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhC--CCcceeehhhcccc-----------------cccc---C--C
Q 004021 218 QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILS--PKKFRIDLTELGVP-----------------LQML---N--A 273 (779)
Q Consensus 218 ~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~~~~ld~l~~~-----------------~~~~---~--~ 273 (779)
..++..++..++..... ...+..+....+.+.+. ++++.+++|++... +... + .
T Consensus 101 ~~~~~~l~~~l~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV--RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHTCCCCC--TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 46777888887653110 12233455566666664 56776666665221 0001 1 3
Q ss_pred CcEEEEEeCchhhhh-------hc-C--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhC------C
Q 004021 274 GFKIVLKTRSAGVCD-------QM-D--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECG------R 337 (779)
Q Consensus 274 gs~IivTTR~~~va~-------~~-~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~------g 337 (779)
+..||+||+...+.. .. . ...+.+++|+.++++++|...+...... ..--.+....|++.|+ |
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCC
Confidence 344888887655321 11 1 2338999999999999998765432211 1122567889999999 9
Q ss_pred ChhHHHHHHHHh---c--CC---CChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhccccC--C
Q 004021 338 LPLALKTVGRAM---K--SQ---KKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYP--E 407 (779)
Q Consensus 338 lPLai~~~g~~l---~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp--~ 407 (779)
.|..+..+.... . .. -+...+......... ...+.-++..||+ +.+.++..++.+. .
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGG 324 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcC
Confidence 997665544321 1 11 122223222221100 1223335677887 7888888888653 3
Q ss_pred CcccChHHHHHHHH--H---cCCCc-chhhHHHHHHHHHHccccccc-----CCCcEEechHH
Q 004021 408 DYKIPKRSLIDYWI--S---EGFMA-DFDRGCEFINDLLHACLLEEE-----GDDHVKMHDMI 459 (779)
Q Consensus 408 ~~~i~~~~Li~~W~--a---~g~~~-~~~~~~~~l~~L~~~sll~~~-----~~~~~~mHdlv 459 (779)
+..++...+...+. + .|.-. .......+++.|...+++... ..++|++|++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 34555555554442 2 23211 124567889999999999774 23445555544
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.1e-12 Score=133.39 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=52.9
Q ss_pred ccccCCccEEEcccccccccccCcc-----cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEee
Q 004021 491 VKEWEGAKRISLMANEIESLSEIPT-----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLN 565 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~~~-----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~ 565 (779)
...+.+++.|++.+|.+..++.... .|+|++| .+..+|. +.++++|++|++++|.++.+|.... ++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 3444555555555555555442211 2555555 5555554 5555555666665555555553222 5555555
Q ss_pred ccCCcCCCCCchhhhcCCccCcEeeeccccCC
Q 004021 566 LEYTHYLSIIPHQLISGFLKLEVLRLLECGSE 597 (779)
Q Consensus 566 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 597 (779)
+++| .++.+|. ++++++|++|++++|.+.
T Consensus 113 L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 113 LDNN-ELRDTDS--LIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCSS-CCSBSGG--GTTCTTCCEEECTTSCCC
T ss_pred ccCC-ccCCChh--hcCcccccEEECCCCcCC
Confidence 5555 4455543 555555555555555544
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=8.6e-12 Score=139.99 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=131.4
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
.|+|++| .++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++| .++.+|. +.+ +|++|++++|.
T Consensus 63 ~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 63 ELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE--LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp EEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEEECCSSC
T ss_pred EEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch--hhc--CCCEEECCCCc
Confidence 4899999 8999998774 89999999999999999 56899999999999 6788988 555 99999999998
Q ss_pred CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccc
Q 004021 596 SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVD 675 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 675 (779)
+.++ +. .+++|+.|+++.|... .++ . .+++|+.|+|++|.. ..++
T Consensus 132 l~~l---------------p~---~l~~L~~L~Ls~N~l~---------~lp-~---~l~~L~~L~Ls~N~L-~~lp--- 176 (571)
T 3cvr_A 132 LTML---------------PE---LPALLEYINADNNQLT---------MLP-E---LPTSLEVLSVRNNQL-TFLP--- 176 (571)
T ss_dssp CSCC---------------CC---CCTTCCEEECCSSCCS---------CCC-C---CCTTCCEEECCSSCC-SCCC---
T ss_pred CCCC---------------CC---cCccccEEeCCCCccC---------cCC-C---cCCCcCEEECCCCCC-CCcc---
Confidence 8752 22 5789999999966543 221 1 468999999999754 3332
Q ss_pred cccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCCCCCCCc-------cEEeeeCCCCCCCCCCCCCCcc-cccE
Q 004021 676 KLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNPLHFPKL-------KKIGVYGCPKLKKLPINSSSAK-ERRV 747 (779)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L-------~~L~l~~c~~L~~lP~~~~~~~-~~~l 747 (779)
.+. ++|+.|+|++ +.++.+|. +.. +| +.|++++| .++.+|..+...+ ++.+
T Consensus 177 --------------~l~--~~L~~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 177 --------------ELP--ESLEALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTI 235 (571)
T ss_dssp --------------CCC--TTCCEEECCS-SCCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEE
T ss_pred --------------hhh--CCCCEEECcC-CCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEE
Confidence 233 8999999998 47888887 433 77 99999987 6889998665443 3777
Q ss_pred EEech
Q 004021 748 VIEGL 752 (779)
Q Consensus 748 ~i~~~ 752 (779)
.+.++
T Consensus 236 ~L~~N 240 (571)
T 3cvr_A 236 ILEDN 240 (571)
T ss_dssp ECCSS
T ss_pred EeeCC
Confidence 77755
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=119.67 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=35.4
Q ss_pred cccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCC
Q 004021 524 SLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSE 597 (779)
Q Consensus 524 ~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 597 (779)
.++.+|..+. .+|++|++++|.++.+|..+.++++|++|++++| .++.++++.|.++++|++|++++|.+.
T Consensus 21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4444444332 3455555555555555555555555555555555 344444433555555555555555444
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=6.1e-13 Score=150.16 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=14.5
Q ss_pred ccccccccccccchhhcccccCceeeecCC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLT 546 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 546 (779)
|+|++| .++.+|.+|++|++|+.|++++|
T Consensus 354 L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 354 CELSVE-KSTVLQSELESCKELQELEPENK 382 (567)
T ss_dssp CCCCHH-HHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCChh-hHHhhHHHHHHHHHHHHhccccc
Confidence 444555 44455555555555555554433
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=3e-12 Score=138.39 Aligned_cols=206 Identities=18% Similarity=0.121 Sum_probs=141.5
Q ss_pred cccccccccccc-----cchhhcccccCceeeecCCcccc----cchhh-------ccCccCcEeeccCCcCCCC-----
Q 004021 516 LLSLRRNDSLTE-----LPSRISSLVSLHHLDLSLTHIRG----LPQEL-------KALEKLRYLNLEYTHYLSI----- 574 (779)
Q Consensus 516 lL~L~~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~~----lp~~~-------~~L~~L~~L~l~~~~~l~~----- 574 (779)
.|+|++| .+.. ++..+.++++|++|+|++|.+.. +|..+ .++++|++|+|++| .+..
T Consensus 36 ~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~ 113 (386)
T 2ca6_A 36 EIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEP 113 (386)
T ss_dssp EEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHHH
T ss_pred EEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHHH
Confidence 4899999 7765 34457789999999999975553 35444 78999999999999 4554
Q ss_pred CchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCC---------CCCCceeEEeeccc---------c
Q 004021 575 IPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGL---------KRLNVLSWSFRSSL---------A 636 (779)
Q Consensus 575 lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L---------~~L~~L~l~~~~~~---------~ 636 (779)
+|.. +.++++|++|++++|.+.... .......+..+ ++|+.|+++.|... .
T Consensus 114 l~~~-l~~~~~L~~L~L~~n~l~~~~----------~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 114 LIDF-LSKHTPLEHLYLHNNGLGPQA----------GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp HHHH-HHHCTTCCEEECCSSCCHHHH----------HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred HHHH-HHhCCCCCEEECcCCCCCHHH----------HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 6765 889999999999999875300 01222334444 89999999988764 2
Q ss_pred cccCCCCCcccC--------------c-ccccccCcceEEecccccc----ceecccccccCcccchhhccCCCCCCCCc
Q 004021 637 VQKFFKYPKLDL--------------T-WLVFVQNLKELEIIVCTEM----EEIICVDKLRDVSDISEIIGSEHNFFTQL 697 (779)
Q Consensus 637 ~~~~~~L~~L~~--------------~-~l~~l~~L~~L~L~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 697 (779)
+..+++|+.|.+ + .+..+++|+.|+|++|... ..++ ..+..+++|
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~----------------~~l~~~~~L 246 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA----------------IALKSWPNL 246 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----------------HHGGGCTTC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----------------HHHccCCCc
Confidence 235667777711 1 5667888999999887642 2222 255678899
Q ss_pred cEEEccCCCCCccc-----cCCC--CCCCCccEEeeeCCCCCCC-----CCCCC-C-CcccccEEEech
Q 004021 698 ESLGILYGPDLKSI-----YPNP--LHFPKLKKIGVYGCPKLKK-----LPINS-S-SAKERRVVIEGL 752 (779)
Q Consensus 698 ~~L~l~~~~~l~~l-----~~~~--~~l~~L~~L~l~~c~~L~~-----lP~~~-~-~~~~~~l~i~~~ 752 (779)
+.|+|++|. +... +..+ +.+++|++|++++|. +.. +|..+ . ..+++.+.+.++
T Consensus 247 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 247 RELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 999999864 4432 3333 348999999999885 554 77654 2 234577777654
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.2e-11 Score=116.57 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=87.1
Q ss_pred cccccccccc--ccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCC-CchhhhcCCccCcEeeecc
Q 004021 517 LSLRRNDSLT--ELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSI-IPHQLISGFLKLEVLRLLE 593 (779)
Q Consensus 517 L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~-lp~~~i~~L~~L~~L~l~~ 593 (779)
|++++| .+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++| .+.. +|.. +..+++|++|++++
T Consensus 29 L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 29 LVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDML-AEKLPNLTHLNLSG 104 (168)
T ss_dssp EECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHH-HHHCTTCCEEECBS
T ss_pred EECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHH-HhhCCCCCEEeccC
Confidence 444444 454 5677778888888888888888877 67888888888888888 4555 5553 66788888888888
Q ss_pred ccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccc
Q 004021 594 CGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTE 667 (779)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~ 667 (779)
|.+.. ...+..+..+++|+.|+++.|....+.. .....+..+++|++|++++|..
T Consensus 105 N~l~~-------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 105 NKLKD-------------ISTLEPLKKLECLKSLDLFNCEVTNLND------YRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SSCCS-------------SGGGGGGSSCSCCCEEECCSSGGGTSTT------HHHHHHTTCSSCCEETTEETTS
T ss_pred CccCc-------------chhHHHHhcCCCCCEEEeeCCcCcchHH------HHHHHHHhCccCcEecCCCCCh
Confidence 87764 2233567777888888887554332110 0002456677888888877653
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=1.9e-11 Score=117.78 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=58.9
Q ss_pred cccccccccccchhhcccccCceeeecCCcccccchh--hccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 518 SLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQE--LKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 518 ~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
+++++ .++.+|..+.. +|++|++++|.++.+|.. ++++++|++|++++| .++.+++..++++++|++|++++|.
T Consensus 14 ~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 14 DCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp ECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc
Confidence 34444 44444444332 555555555555555442 555555555555555 3444432235555555555555555
Q ss_pred CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEecccc
Q 004021 596 SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCT 666 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~ 666 (779)
+.. ..+..+..+++|+.|+++.|. ++.+.+..+..+++|++|+|++|+
T Consensus 90 l~~--------------~~~~~~~~l~~L~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKE--------------ISNKMFLGLHQLKTLNLYDNQ---------ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCE--------------ECSSSSTTCTTCCEEECCSSC---------CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCc--------------cCHHHhcCCCCCCEEECCCCc---------CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 443 112224445555555555322 222223344555566666666544
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.21 E-value=7.2e-12 Score=134.06 Aligned_cols=212 Identities=17% Similarity=0.174 Sum_probs=124.2
Q ss_pred CCccEEEccccccccccc---------Cc-c--ccccccccccccc-chhhccc-----ccCceeeecCCcccccchh--
Q 004021 495 EGAKRISLMANEIESLSE---------IP-T--LLSLRRNDSLTEL-PSRISSL-----VSLHHLDLSLTHIRGLPQE-- 554 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~---------~~-~--lL~L~~~~~l~~l-p~~i~~L-----~~L~~L~L~~~~i~~lp~~-- 554 (779)
.++++|++++|.+...+. .+ . .|+|++| .++.. +..++.+ ++|++|+|++|.++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 358888888888766542 12 2 4888888 77765 5666665 8888888888888765432
Q ss_pred ---hccC-ccCcEeeccCCcCCCCCchhhh----cC-CccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCC-CC
Q 004021 555 ---LKAL-EKLRYLNLEYTHYLSIIPHQLI----SG-FLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLK-RL 624 (779)
Q Consensus 555 ---~~~L-~~L~~L~l~~~~~l~~lp~~~i----~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L 624 (779)
+..+ ++|++|++++| .++..+...+ .. .++|++|++++|.+.. .........+..++ +|
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~----------~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI----------KSSDELIQILAAIPANV 169 (362)
T ss_dssp HHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG----------SCHHHHHHHHHTSCTTC
T ss_pred HHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH----------HHHHHHHHHHhcCCccc
Confidence 4455 78888888888 4566555323 23 2588888888887663 11123344455555 78
Q ss_pred CceeEEeeccccc---------ccC-CCCCcccCc--------------cccc-ccCcceEEeccccccceecccccccC
Q 004021 625 NVLSWSFRSSLAV---------QKF-FKYPKLDLT--------------WLVF-VQNLKELEIIVCTEMEEIICVDKLRD 679 (779)
Q Consensus 625 ~~L~l~~~~~~~~---------~~~-~~L~~L~~~--------------~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~ 679 (779)
+.|+++.|..... ..+ ++|+.|.+. .+.. .++|+.|+|++|......+.
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------ 243 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE------ 243 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH------
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH------
Confidence 8888876655322 122 355554111 1222 24677777776543221110
Q ss_pred cccchhhccCCCCCCCCccEEEccCCC-------CCccccCCCCCCCCccEEeeeCCC
Q 004021 680 VSDISEIIGSEHNFFTQLESLGILYGP-------DLKSIYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 680 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~ 730 (779)
.+. ..+..+++|+.|+++++. .+..++.....+++|+.|++++++
T Consensus 244 --~l~----~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 244 --NLK----LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp --HHH----HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred --HHH----HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 000 234556777777777643 122333445566677777777664
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=3e-11 Score=116.44 Aligned_cols=121 Identities=23% Similarity=0.250 Sum_probs=101.1
Q ss_pred cEEEcccccccccccCcc----cccccccccccccchhhcccccCceeeecCCcccccch-hhccCccCcEeeccCCcCC
Q 004021 498 KRISLMANEIESLSEIPT----LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYTHYL 572 (779)
Q Consensus 498 r~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~l 572 (779)
+.++++++.+..+|.... .|+|++| .+..+|..|.++++|++|+|++|.|+.++. .|.++++|++|+|++| .+
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence 568888888888876433 4999999 999999999999999999999999999875 5999999999999999 68
Q ss_pred CCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecc
Q 004021 573 SIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSS 634 (779)
Q Consensus 573 ~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 634 (779)
+.+|+..+.++++|++|++++|.+..+ ....+..+++|+.|+++.|..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVV--------------PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBC--------------CTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCee--------------ChhhhhcCccccEEEeCCCCe
Confidence 888876699999999999999988752 223466778888888876653
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.2e-11 Score=113.92 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=60.4
Q ss_pred ccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCC-CchhhhcCCccCcEeeeccccCCCcccccCC
Q 004021 527 ELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSI-IPHQLISGFLKLEVLRLLECGSEGVTKEEGN 605 (779)
Q Consensus 527 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~-lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 605 (779)
.+|..++.+++|++|++++|.++.+ ..++++++|++|++++| .+.. +|.. ++++++|++|++++|.+..
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~ls~N~i~~------- 102 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVL-AEKCPNLTHLNLSGNKIKD------- 102 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHH-HHHCTTCCEEECTTSCCCS-------
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHH-hhhCCCCCEEECCCCcCCC-------
Confidence 5666667777788888877777777 56777777888888777 4555 5553 6667778888777777654
Q ss_pred ccCCCchhhHHhhcCCCCCCceeEEee
Q 004021 606 VLCDDAEPLMRELLGLKRLNVLSWSFR 632 (779)
Q Consensus 606 ~~~~~~~~~~~~l~~L~~L~~L~l~~~ 632 (779)
...+..++.+++|+.|+++.|
T Consensus 103 ------~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 103 ------LSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ------HHHHGGGGGCTTCCEEECTTC
T ss_pred ------hHHHHHHhhCCCCCEEeCcCC
Confidence 223355556666666666544
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=2.5e-11 Score=116.99 Aligned_cols=122 Identities=17% Similarity=0.251 Sum_probs=103.2
Q ss_pred cEEEcccccccccccCcc----cccccccccccccchh--hcccccCceeeecCCccccc-chhhccCccCcEeeccCCc
Q 004021 498 KRISLMANEIESLSEIPT----LLSLRRNDSLTELPSR--ISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTH 570 (779)
Q Consensus 498 r~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~~--i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~ 570 (779)
+.++++++.+..+|.... .|+|++| .+..+|.. |+++++|++|+|++|.++.+ |..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN- 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-
Confidence 678888888888876433 5999999 89888764 89999999999999999987 678999999999999999
Q ss_pred CCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccc
Q 004021 571 YLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSL 635 (779)
Q Consensus 571 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 635 (779)
.++.+++..++++++|++|++++|.+.+ ..+..+..+++|+.|+++.|...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISC--------------VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCE--------------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCe--------------eCHHHhhcCCCCCEEEeCCCCcc
Confidence 6787777668899999999999998875 34566788999999999876543
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=8.3e-12 Score=145.45 Aligned_cols=114 Identities=21% Similarity=0.079 Sum_probs=61.4
Q ss_pred cchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCcc
Q 004021 528 LPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVL 607 (779)
Q Consensus 528 lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 607 (779)
.|..+..+.+|++|+|++|.+..+|..+.++++|++|+|++| .++.+|.. |++|++|++|++++|.+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N~l~~--------- 284 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAE-IKNLSNLRVLDLSHNRLTS--------- 284 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGG-GGGGTTCCEEECTTSCCSS---------
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChh-hhCCCCCCEEeCcCCcCCc---------
Confidence 355556666666666666666666666666666666666666 45566655 5666666666666665543
Q ss_pred CCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEecccccc
Q 004021 608 CDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEM 668 (779)
Q Consensus 608 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~ 668 (779)
.+..++.|++|+.|+++.|. |..+ +..++.+++|+.|+|++|...
T Consensus 285 ------lp~~~~~l~~L~~L~L~~N~---------l~~l-p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 285 ------LPAELGSCFQLKYFYFFDNM---------VTTL-PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ------CCSSGGGGTTCSEEECCSSC---------CCCC-CSSTTSCTTCCCEECTTSCCC
T ss_pred ------cChhhcCCCCCCEEECCCCC---------CCcc-ChhhhcCCCccEEeCCCCccC
Confidence 23345555666666665332 2222 223555666666666665443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=7.9e-11 Score=110.83 Aligned_cols=127 Identities=23% Similarity=0.242 Sum_probs=105.1
Q ss_pred CCccEEEccccccc--ccccCcc------cccccccccccccchhhcccccCceeeecCCcccc-cchhhccCccCcEee
Q 004021 495 EGAKRISLMANEIE--SLSEIPT------LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRG-LPQELKALEKLRYLN 565 (779)
Q Consensus 495 ~~lr~l~l~~~~~~--~l~~~~~------lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~~~~L~~L~~L~ 565 (779)
..++.|++++|.+. .+|.... .|+|++| .+..+ ..++.+++|++|++++|.++. +|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 58999999999988 7766522 3999999 88888 789999999999999999998 888888899999999
Q ss_pred ccCCcCCCCCch-hhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccc
Q 004021 566 LEYTHYLSIIPH-QLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSL 635 (779)
Q Consensus 566 l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 635 (779)
+++| .++.+|. ..+..+++|++|++++|.+...+ ......+..+++|+.|+++.+...
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-----------~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN-----------DYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST-----------THHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH-----------HHHHHHHHhCccCcEecCCCCChh
Confidence 9999 6788772 23899999999999999887511 112246888999999999977654
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=4.7e-11 Score=113.30 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=65.1
Q ss_pred ccCCccEEEcccccccccccCcccccccccccccccchhhcccc-cCceeeecCCcccccchhhccCccCcEeeccCCcC
Q 004021 493 EWEGAKRISLMANEIESLSEIPTLLSLRRNDSLTELPSRISSLV-SLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHY 571 (779)
Q Consensus 493 ~~~~lr~l~l~~~~~~~l~~~~~lL~L~~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~ 571 (779)
...+++.|++.+|.+..++. +..+. +|++|++++|.++.+ ..++++++|++|++++| .
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-------------------~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~ 75 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-------------------LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-R 75 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-------------------GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-C
T ss_pred CcCCceEEEeeCCCCchhHH-------------------hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-c
Confidence 34567777777666554432 22333 555555555555554 34555555555555555 3
Q ss_pred CCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCccc
Q 004021 572 LSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWL 651 (779)
Q Consensus 572 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l 651 (779)
+..+|++.++.+++|++|++++|.+.. ...+..+..+++|+.|++++|....++.. ....+
T Consensus 76 l~~~~~~~~~~l~~L~~L~L~~N~i~~-------------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~------~~~~~ 136 (176)
T 1a9n_A 76 ICRIGEGLDQALPDLTELILTNNSLVE-------------LGDLDPLASLKSLTYLCILRNPVTNKKHY------RLYVI 136 (176)
T ss_dssp CCEECSCHHHHCTTCCEEECCSCCCCC-------------GGGGGGGGGCTTCCEEECCSSGGGGSTTH------HHHHH
T ss_pred ccccCcchhhcCCCCCEEECCCCcCCc-------------chhhHhhhcCCCCCEEEecCCCCCCcHhH------HHHHH
Confidence 445554423555555555555554432 11112344555555555555544432110 00113
Q ss_pred ccccCcceEEecccc
Q 004021 652 VFVQNLKELEIIVCT 666 (779)
Q Consensus 652 ~~l~~L~~L~L~~~~ 666 (779)
..+++|+.|+++.|.
T Consensus 137 ~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCSEETTEECC
T ss_pred HHCCccceeCCCcCC
Confidence 455666666666544
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.13 E-value=4.2e-09 Score=113.47 Aligned_cols=277 Identities=14% Similarity=0.056 Sum_probs=163.9
Q ss_pred ccccchhhhHHHHHHHHhc--cCCCceEEEEEcCCCCcHHHHHHHHHhhhccc---cCC--CCEEEEEEe-------chH
Q 004021 155 QTIVGQEKLLPRVWRCITD--QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ---QHN--FDVVIWAAV-------QTF 220 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~---~~~--F~~~~wv~v-------~~i 220 (779)
..++||+++++++.+++.. .....+.+.|+|++|+||||||+.+++..... ... ....+|++. ..+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6789999999999988865 23356789999999999999999999875211 011 335667765 234
Q ss_pred HHHHHHHhCCCcchhhhhcchhhHHHHHHHhhCCCcceeehhhcccc------------ccccCCCcEEEEEeCchhh--
Q 004021 221 QDDIGKRIGFSEDKKWKEKSLQDKAVDISSILSPKKFRIDLTELGVP------------LQMLNAGFKIVLKTRSAGV-- 286 (779)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~------------~~~~~~gs~IivTTR~~~v-- 286 (779)
...++..+... .......+.......+.+.+..++..+.+|++... +.....+..||+||+....
T Consensus 100 ~~~l~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGF-SVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCS-CCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 55666665211 11112233455667777888777755555554211 1111157889999987532
Q ss_pred --hhhc--C-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhC---CChh-HHHHHHHH--hcC---C
Q 004021 287 --CDQM--D-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECG---RLPL-ALKTVGRA--MKS---Q 352 (779)
Q Consensus 287 --a~~~--~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~---glPL-ai~~~g~~--l~~---~ 352 (779)
.... . ...+.+++++.++..++|...+.... ....--.+....|++.|+ |.|. |+..+-.. +.. .
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 1111 1 24889999999999999998865311 001111456778888888 8876 44433322 221 1
Q ss_pred CChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhccccCCCcccChHHHHHHHHHcCCCc-chhh
Q 004021 353 KKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYPEDYKIPKRSLIDYWISEGFMA-DFDR 431 (779)
Q Consensus 353 ~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~a~g~~~-~~~~ 431 (779)
-+.+.+..+++... ...+.-++..|++ +.+..+..++....+..+. .......-..|... ....
T Consensus 258 i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 258 IRKEHVDKAIVDYE-------------QERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp CCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTTCCCCCHHH
T ss_pred cCHHHHHHHHHHHh-------------cchHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcCCCCCCHHH
Confidence 34556665554321 2345667788987 6666666565511101111 11112222233111 2256
Q ss_pred HHHHHHHHHHccccccc
Q 004021 432 GCEFINDLLHACLLEEE 448 (779)
Q Consensus 432 ~~~~l~~L~~~sll~~~ 448 (779)
..+++..|...++++..
T Consensus 323 ~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 323 FSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 77889999999999874
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=3.6e-11 Score=128.61 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=115.7
Q ss_pred cccccccccccccc-----hhhcccc-cCceeeecCCccccc-chhhccC-----ccCcEeeccCCcCCCCCchhhh---
Q 004021 516 LLSLRRNDSLTELP-----SRISSLV-SLHHLDLSLTHIRGL-PQELKAL-----EKLRYLNLEYTHYLSIIPHQLI--- 580 (779)
Q Consensus 516 lL~L~~~~~l~~lp-----~~i~~L~-~L~~L~L~~~~i~~l-p~~~~~L-----~~L~~L~l~~~~~l~~lp~~~i--- 580 (779)
.|+|++| .++..+ ..+.+++ +|++|+|++|.++.. +..+..+ ++|++|++++| .++..+...+
T Consensus 26 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 103 (362)
T 3goz_A 26 SLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKT 103 (362)
T ss_dssp EEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHH
T ss_pred EEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHH
Confidence 4899999 888775 5677888 899999999988875 4556554 89999999999 4565544323
Q ss_pred -cCC-ccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCC-CCCCceeEEeeccccc---------ccC-CCCCccc
Q 004021 581 -SGF-LKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGL-KRLNVLSWSFRSSLAV---------QKF-FKYPKLD 647 (779)
Q Consensus 581 -~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~---------~~~-~~L~~L~ 647 (779)
..+ ++|++|++++|.+...+ .......+..+ ++|++|+++.|..... ..+ ++|+.|.
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~----------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKS----------SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSC----------HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHhCCCCccEEECcCCcCCcHH----------HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 344 89999999999876411 12233445554 6899999987765421 122 2566651
Q ss_pred Cc--------------ccccc-cCcceEEeccccccceecccccccCcccchhhccCCCCC-CCCccEEEccCCCCCccc
Q 004021 648 LT--------------WLVFV-QNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNF-FTQLESLGILYGPDLKSI 711 (779)
Q Consensus 648 ~~--------------~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~l 711 (779)
+. .+..+ ++|+.|+|++|........ .++ ..+.. .++|+.|+|+++ .+...
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~--------~l~----~~l~~~~~~L~~L~Ls~N-~l~~~ 240 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA--------ELA----YIFSSIPNHVVSLNLCLN-CLHGP 240 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--------HHH----HHHHHSCTTCCEEECCSS-CCCCC
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH--------HHH----HHHhcCCCCceEEECcCC-CCCcH
Confidence 11 11223 3677777776543221000 000 12222 347777777764 44433
Q ss_pred cC-----CCCCCCCccEEeeeCCC
Q 004021 712 YP-----NPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 712 ~~-----~~~~l~~L~~L~l~~c~ 730 (779)
+. ....+++|+.|++++|.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCC
Confidence 22 33456777777777764
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=8e-11 Score=137.18 Aligned_cols=127 Identities=20% Similarity=0.168 Sum_probs=102.6
Q ss_pred cccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 516 LLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 516 lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
.|+|++| .+..+|..+++|++|++|+|++|.|+.+|..|++|++|++|+|++| .++.+|.. |++|++|++|++++|.
T Consensus 228 ~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 228 ALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNM 304 (727)
T ss_dssp EEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSC
T ss_pred EEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCC
Confidence 3999999 8999999999999999999999999999999999999999999999 67899997 9999999999999998
Q ss_pred CCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCccccccc-CcceEEeccccccc
Q 004021 596 SEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQ-NLKELEIIVCTEME 669 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~-~L~~L~L~~~~~~~ 669 (779)
+.. .+..++.|++|+.|+|+.|. |....+..+..+. .+..|+|++|....
T Consensus 305 l~~---------------lp~~~~~l~~L~~L~L~~N~---------l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 305 VTT---------------LPWEFGNLCNLQFLGVEGNP---------LEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp CCC---------------CCSSTTSCTTCCCEECTTSC---------CCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCc---------------cChhhhcCCCccEEeCCCCc---------cCCCChHHHhhcchhhhHHhhccCcccC
Confidence 764 45568899999999998554 3333333333321 12346677765433
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=2.4e-10 Score=108.49 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=59.8
Q ss_pred cccccchhhcccccCceeeecCCcccccchh-hccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccc
Q 004021 524 SLTELPSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKE 602 (779)
Q Consensus 524 ~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 602 (779)
.+..+|..+. .+|++|++++|.++.+|.. ++++++|++|++++| .++.+|...++.+++|++|++++|.+..
T Consensus 18 ~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~---- 90 (177)
T 2o6r_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQS---- 90 (177)
T ss_dssp CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC----
T ss_pred CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccc----
Confidence 4444443332 4566666666666555543 455666666666665 4555555444556666666666655543
Q ss_pred cCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEecccc
Q 004021 603 EGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCT 666 (779)
Q Consensus 603 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~ 666 (779)
.....+..+++|+.|+++.|. ++.+.+..+..+++|++|+|++|+
T Consensus 91 ----------~~~~~~~~l~~L~~L~l~~N~---------l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 91 ----------LPNGVFDKLTQLKELALDTNQ---------LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSC---------CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------cCHHHhhCCcccCEEECcCCc---------ceEeCHHHhcCCcccCEEEecCCC
Confidence 111223445555555555332 222222234455666666666654
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.09 E-value=6.4e-09 Score=112.11 Aligned_cols=275 Identities=15% Similarity=0.124 Sum_probs=161.8
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhcccc---CCCCEEEEEEe------chHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ---HNFDVVIWAAV------QTFQDD 223 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~---~~F~~~~wv~v------~~i~~~ 223 (779)
..++||+++++++.+++... ....+.+.|+|++|+||||||+.+++...... +.-...+|++. ..+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 67899999999999998653 33567899999999999999999998762110 10123456665 356777
Q ss_pred HHHHhCCCcchhhhhcchhhHHHHHHHhhC--CCcceeehhhcccc-------------cccc-----CCCcEEEEEeCc
Q 004021 224 IGKRIGFSEDKKWKEKSLQDKAVDISSILS--PKKFRIDLTELGVP-------------LQML-----NAGFKIVLKTRS 283 (779)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~~~~ld~l~~~-------------~~~~-----~~gs~IivTTR~ 283 (779)
++..++.... ....+..+....+.+.+. +++..+.+|++... +... ..+..+|.||+.
T Consensus 99 l~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 99 IAEAVGVRVP--FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHSCCCC--SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHhCCCCC--CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 8887765311 122234455566666664 33455555554221 1111 345678888876
Q ss_pred hhh--------hhhcCCceeEccCCChHHHHHHHHHHhhc--cCCCCCCChHHHHHHHHHHhC---CChhH-HHHHHHHh
Q 004021 284 AGV--------CDQMDSKNLEVYSLAHDEAWKLFQEMIER--STLDSHTSIPELAETLARECG---RLPLA-LKTVGRAM 349 (779)
Q Consensus 284 ~~v--------a~~~~~~~~~l~~L~~~~a~~Lf~~~a~~--~~~~~~~~l~~~~~~I~~~c~---glPLa-i~~~g~~l 349 (779)
... ...++...+.+++++.++..+++...+.. .....+ .+....|++.++ |.|-. +..+....
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 532 11122247899999999999999988653 111122 345677888888 99943 33332221
Q ss_pred --c---C--CCChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhcc-ccCCCcccChHHHHHHH-
Q 004021 350 --K---S--QKKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCC-LYPEDYKIPKRSLIDYW- 420 (779)
Q Consensus 350 --~---~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s-~fp~~~~i~~~~Li~~W- 420 (779)
. + .-+.+.+..+++... ...+.-++..+++ +.+..+..++ ++.....+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 124455555444321 2235557788987 6666555554 34322344444333332
Q ss_pred ---HHcCCCc-chhhHHHHHHHHHHccccccc
Q 004021 421 ---ISEGFMA-DFDRGCEFINDLLHACLLEEE 448 (779)
Q Consensus 421 ---~a~g~~~-~~~~~~~~l~~L~~~sll~~~ 448 (779)
-..|... .......+++.|...++++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2223211 125677889999999999874
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=1.1e-10 Score=131.63 Aligned_cols=100 Identities=28% Similarity=0.341 Sum_probs=68.4
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
|+|++| .++.+|. |++|++|++|+|++|.++.+|..+++|++|++|+|++| .++.+| . +++|++|++|++++|.+
T Consensus 446 L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 446 LHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNNRL 520 (567)
T ss_dssp EECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSSCC
T ss_pred EEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCCCC
Confidence 555666 6666765 77777777777777777777777777777777777777 566677 4 77777777777777766
Q ss_pred CCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecc
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSS 634 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 634 (779)
.+ ...+..++.|++|+.|++++|..
T Consensus 521 ~~-------------~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 521 QQ-------------SAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CS-------------SSTTGGGGGCTTCCEEECTTSGG
T ss_pred CC-------------CCCcHHHhcCCCCCEEEecCCcC
Confidence 64 11145566666666666665443
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=7e-11 Score=108.69 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=100.6
Q ss_pred ccccCceeeecCCccc--ccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCc
Q 004021 534 SLVSLHHLDLSLTHIR--GLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDA 611 (779)
Q Consensus 534 ~L~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 611 (779)
..++|+.|++++|.++ .+|..+..+++|++|++++| .+..+ .. ++.+++|++|++++|.+..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~n~i~~------------- 78 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-AN-LPKLNKLKKLELSDNRVSG------------- 78 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TT-CCCCTTCCEEECCSSCCCS-------------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hh-hhcCCCCCEEECCCCcccc-------------
Confidence 4588999999999998 89998999999999999999 67777 43 8999999999999998874
Q ss_pred hhhHHhhcCCCCCCceeEEeecccccccCCCCCcc-cCcccccccCcceEEeccccccceecccccccCcccchhhccCC
Q 004021 612 EPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKL-DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSE 690 (779)
Q Consensus 612 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (779)
..+..++.+++|+.|+++.|.. ..+ .+..+..+++|++|++++|... .++.. ....
T Consensus 79 -~~~~~~~~l~~L~~L~ls~N~i---------~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~------------~~~~ 135 (149)
T 2je0_A 79 -GLEVLAEKCPNLTHLNLSGNKI---------KDLSTIEPLKKLENLKSLDLFNCEVT-NLNDY------------RENV 135 (149)
T ss_dssp -CTHHHHHHCTTCCEEECTTSCC---------CSHHHHGGGGGCTTCCEEECTTCGGG-GSTTH------------HHHH
T ss_pred -hHHHHhhhCCCCCEEECCCCcC---------CChHHHHHHhhCCCCCEEeCcCCccc-chHHH------------HHHH
Confidence 2455566789999999985543 333 2356788899999999997543 22210 0013
Q ss_pred CCCCCCccEEEccC
Q 004021 691 HNFFTQLESLGILY 704 (779)
Q Consensus 691 ~~~~~~L~~L~l~~ 704 (779)
+..+++|+.|++++
T Consensus 136 ~~~l~~L~~L~l~d 149 (149)
T 2je0_A 136 FKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEETTBC
T ss_pred HHHCCCcccccCCC
Confidence 56788898888763
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=9.1e-11 Score=111.32 Aligned_cols=139 Identities=14% Similarity=0.014 Sum_probs=103.2
Q ss_pred hhcccccCceeeecCCcccccchhhccCc-cCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCC
Q 004021 531 RISSLVSLHHLDLSLTHIRGLPQELKALE-KLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCD 609 (779)
Q Consensus 531 ~i~~L~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 609 (779)
.+.++.+|++|++++|.++.+|. +..+. +|++|++++| .++.++ . ++.+++|++|++++|.+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~--------- 80 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLD-G-FPLLRRLKTLLVNNNRICRIG--------- 80 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEEC-C-CCCCSSCCEEECCSSCCCEEC---------
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCccc-c-cccCCCCCEEECCCCcccccC---------
Confidence 46678899999999999999875 55555 9999999999 677774 3 899999999999999887521
Q ss_pred CchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccC
Q 004021 610 DAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGS 689 (779)
Q Consensus 610 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (779)
+..+..+++|+.|+++.|....++. ...+..+++|+.|++++|+.. .++.. . . .
T Consensus 81 -----~~~~~~l~~L~~L~L~~N~i~~~~~--------~~~l~~l~~L~~L~l~~N~i~-~~~~~----~---~-----~ 134 (176)
T 1a9n_A 81 -----EGLDQALPDLTELILTNNSLVELGD--------LDPLASLKSLTYLCILRNPVT-NKKHY----R---L-----Y 134 (176)
T ss_dssp -----SCHHHHCTTCCEEECCSCCCCCGGG--------GGGGGGCTTCCEEECCSSGGG-GSTTH----H---H-----H
T ss_pred -----cchhhcCCCCCEEECCCCcCCcchh--------hHhhhcCCCCCEEEecCCCCC-CcHhH----H---H-----H
Confidence 1224678899999999665432211 135778899999999997653 33320 0 0 1
Q ss_pred CCCCCCCccEEEccCCCCC
Q 004021 690 EHNFFTQLESLGILYGPDL 708 (779)
Q Consensus 690 ~~~~~~~L~~L~l~~~~~l 708 (779)
.+..+|+|+.|+++++..-
T Consensus 135 ~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 135 VIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHCTTCSEETTEECCHH
T ss_pred HHHHCCccceeCCCcCCHH
Confidence 3678899999999987654
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.06 E-value=1.5e-11 Score=136.36 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=19.2
Q ss_pred CCCCCccEEEccCCCCCcccc-----CC-CCCCCCccEEeeeCCC
Q 004021 692 NFFTQLESLGILYGPDLKSIY-----PN-PLHFPKLKKIGVYGCP 730 (779)
Q Consensus 692 ~~~~~L~~L~l~~~~~l~~l~-----~~-~~~l~~L~~L~l~~c~ 730 (779)
..+++|++|+++++ .+.... .. ....++|++|++++|.
T Consensus 281 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 281 RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 34566666666653 332211 11 1123567777777764
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=1.4e-08 Score=109.35 Aligned_cols=276 Identities=12% Similarity=0.100 Sum_probs=157.9
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCC-CCEEEEEEe------chHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHN-FDVVIWAAV------QTFQDDIG 225 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~-F~~~~wv~v------~~i~~~i~ 225 (779)
..|+||+++++.+.+++... ....+.+.|+|++|+||||||+.+++.. ..... -...+|+.. ..+...++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 67999999999999998752 3356789999999999999999999876 21110 224566665 34566666
Q ss_pred HHhCCCcchhhhhcchhhHHHHHHHhhCC--Ccceeehhhccccc--------------cc--cCCCcEEEEEeCchhhh
Q 004021 226 KRIGFSEDKKWKEKSLQDKAVDISSILSP--KKFRIDLTELGVPL--------------QM--LNAGFKIVLKTRSAGVC 287 (779)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~~~~ld~l~~~~--------------~~--~~~gs~IivTTR~~~va 287 (779)
..++.... ....+..+....+.+.+.. ++..+.+|++.... .. ...+..+|+||+.....
T Consensus 99 ~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 99 ESLDVKVP--FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTSCCCC--SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHhCCCCC--CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 66654311 0122334445555555543 35566666542211 00 23356678888876432
Q ss_pred hhcC--------CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhC---CChhHHHHH-HHHh--c---
Q 004021 288 DQMD--------SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECG---RLPLALKTV-GRAM--K--- 350 (779)
Q Consensus 288 ~~~~--------~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~---glPLai~~~-g~~l--~--- 350 (779)
..+. ...+.+++++.++..+++...+.... ....--.+....|++.++ |.|..+..+ .... .
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 2221 25789999999999999998764321 111222566778888887 998844432 2221 1
Q ss_pred C--CCChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhccccCC-C-cccChHHHHHHH----HH
Q 004021 351 S--QKKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYPE-D-YKIPKRSLIDYW----IS 422 (779)
Q Consensus 351 ~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~-~-~~i~~~~Li~~W----~a 422 (779)
. .-+.+....++... ....+.-++..+|+ ..+..+..++...+ + ..+....+.+.. -.
T Consensus 256 ~~~~i~~~~v~~a~~~~-------------~~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEI-------------ERDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp TCSSCCHHHHHHHHHHH-------------HHHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHH-------------hhchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 12344444433322 12345556778887 66665555553211 1 123333332221 12
Q ss_pred cCCCc-chhhHHHHHHHHHHccccccc
Q 004021 423 EGFMA-DFDRGCEFINDLLHACLLEEE 448 (779)
Q Consensus 423 ~g~~~-~~~~~~~~l~~L~~~sll~~~ 448 (779)
.|.-. .......+++.|...+++...
T Consensus 322 ~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 23211 114567889999999999763
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=6.2e-10 Score=105.61 Aligned_cols=122 Identities=24% Similarity=0.254 Sum_probs=96.1
Q ss_pred ccEEEcccccccccccCcc----cccccccccccccch-hhcccccCceeeecCCcccccchh-hccCccCcEeeccCCc
Q 004021 497 AKRISLMANEIESLSEIPT----LLSLRRNDSLTELPS-RISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYTH 570 (779)
Q Consensus 497 lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~~ 570 (779)
.+.+++.++.+..+|.... .|++++| .+..+|. .++++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N- 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN- 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-
Confidence 4567777777777664322 4888888 7888765 468899999999999999998765 689999999999999
Q ss_pred CCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecc
Q 004021 571 YLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSS 634 (779)
Q Consensus 571 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 634 (779)
.++.+|...+..+++|++|++++|.+..+ ....+..+++|+.|+++.|..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--------------~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSV--------------PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCC--------------CTTTTTTCTTCCEEECCSSCB
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEe--------------CHHHhcCCcccCEEEecCCCe
Confidence 67888887678999999999999988752 223356788999999987653
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.02 E-value=2.9e-11 Score=134.05 Aligned_cols=183 Identities=19% Similarity=0.062 Sum_probs=95.4
Q ss_pred ccccccccccc-----cchhhcccccCceeeecCCccccc-----chh-hccCccCcEeeccCCcCCCC-----Cchhhh
Q 004021 517 LSLRRNDSLTE-----LPSRISSLVSLHHLDLSLTHIRGL-----PQE-LKALEKLRYLNLEYTHYLSI-----IPHQLI 580 (779)
Q Consensus 517 L~L~~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~~l-----p~~-~~~L~~L~~L~l~~~~~l~~-----lp~~~i 580 (779)
|+|++| .++. +|..+..+++|++|++++|.+... ++. +..+++|++|++++| .++. +|.. +
T Consensus 204 L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l 280 (461)
T 1z7x_W 204 LKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRV-L 280 (461)
T ss_dssp EECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH-H
T ss_pred EEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHH-H
Confidence 555555 4443 355555556666666666554432 111 224556666666665 3443 4443 5
Q ss_pred cCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhc-CCCCCCceeEEeecccccccCCCCCcccCcccccccCcce
Q 004021 581 SGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELL-GLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKE 659 (779)
Q Consensus 581 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~ 659 (779)
.++++|++|++++|.+.... .......+. ..++|+.|+++.|....... .. .+.++..+++|+.
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~----------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~-l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEG----------ARLLCETLLEPGCQLESLWVKSCSFTAACC----SH-FSSVLAQNRFLLE 345 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHH----------HHHHHHHHTSTTCCCCEEECTTSCCBGGGH----HH-HHHHHHHCSSCCE
T ss_pred hhCCCcceEECCCCCCchHH----------HHHHHHHhccCCccceeeEcCCCCCchHHH----HH-HHHHHhhCCCccE
Confidence 55566666666655443200 000111111 22455666555433211000 00 1234566789999
Q ss_pred EEeccccccceecccccccCcccchhhccCCC-CCCCCccEEEccCCCCCc-----cccCCCCCCCCccEEeeeCCC
Q 004021 660 LEIIVCTEMEEIICVDKLRDVSDISEIIGSEH-NFFTQLESLGILYGPDLK-----SIYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 660 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~ 730 (779)
|+|++|......+. .+. ..+ ...++|+.|++++| .+. .++..+..+++|++|++++|+
T Consensus 346 L~Ls~n~i~~~~~~--------~l~----~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 346 LQISNNRLEDAGVR--------ELC----QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EECCSSBCHHHHHH--------HHH----HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EEccCCccccccHH--------HHH----HHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 99998743221111 000 111 13679999999986 455 566666678999999999985
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1e-11 Score=120.47 Aligned_cols=119 Identities=22% Similarity=0.212 Sum_probs=92.9
Q ss_pred cccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCccccc
Q 004021 524 SLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEE 603 (779)
Q Consensus 524 ~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 603 (779)
.++.+|..++++++|++|++++|.++.+| .+.++++|++|++++| .+..+|.. +..+++|++|++++|.+..
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~~~L~~L~L~~N~l~~----- 107 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYNQIAS----- 107 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSH-HHHHHHCSEEEEEEEECCC-----
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccch-hhcCCcCCEEECcCCcCCc-----
Confidence 56677778999999999999999999988 8899999999999999 67888875 7788999999999988774
Q ss_pred CCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccc
Q 004021 604 GNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEME 669 (779)
Q Consensus 604 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~ 669 (779)
. ..+..+++|+.|+++.|....+.. +..+..+++|++|++++|+...
T Consensus 108 ----------l-~~~~~l~~L~~L~l~~N~i~~~~~--------~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 108 ----------L-SGIEKLVNLRVLYMSNNKITNWGE--------IDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ----------H-HHHHHHHHSSEEEESEEECCCHHH--------HHHHTTTTTCSEEEECSCHHHH
T ss_pred ----------C-CccccCCCCCEEECCCCcCCchhH--------HHHHhcCCCCCEEEecCCcccc
Confidence 2 256677888888888765432211 1346677888889988875433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=5.4e-10 Score=105.15 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=36.9
Q ss_pred cccccccccccchhhcccccCceeeecCCccccc-chhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 518 SLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 518 ~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
++++| .++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .++.+|++.+.++++|++|++++|.+
T Consensus 15 ~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 15 DCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp ECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCcc
Confidence 33344 4444444332 4455555555555554 333455555555555555 34455544344555555555555544
Q ss_pred C
Q 004021 597 E 597 (779)
Q Consensus 597 ~ 597 (779)
.
T Consensus 91 ~ 91 (170)
T 3g39_A 91 K 91 (170)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=5.7e-10 Score=105.36 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=44.1
Q ss_pred ccccccccccccchhhcccccCceeeecCCccccc-chhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeecccc
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECG 595 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 595 (779)
++++++ .++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .++.+|.+.+.++++|++|++++|.
T Consensus 17 l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 17 VNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 444555 5555555443 5566666666666555 334556666666666666 4555555544566666666666665
Q ss_pred CCC
Q 004021 596 SEG 598 (779)
Q Consensus 596 ~~~ 598 (779)
+..
T Consensus 93 l~~ 95 (174)
T 2r9u_A 93 LKS 95 (174)
T ss_dssp CCC
T ss_pred cce
Confidence 543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=1.2e-09 Score=102.80 Aligned_cols=101 Identities=24% Similarity=0.320 Sum_probs=88.6
Q ss_pred CccEEEcccccccccccCcc----ccccccccccccc-chhhcccccCceeeecCCcccccchh-hccCccCcEeeccCC
Q 004021 496 GAKRISLMANEIESLSEIPT----LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYT 569 (779)
Q Consensus 496 ~lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~ 569 (779)
..+.+++++|.+..+|.... .|+|++| .+..+ |..|.++++|++|+|++|.|+.+|.. |.++++|++|+|++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCccCCCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34678999999988876433 5999999 99988 67799999999999999999999876 589999999999999
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCCC
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
.++.+|++.+.++++|++|++++|.+..
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6888998778999999999999998764
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.96 E-value=2.8e-08 Score=107.16 Aligned_cols=274 Identities=10% Similarity=0.041 Sum_probs=162.0
Q ss_pred ccccchhhhHHHHHHHHhc----cCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCC-CCEEEEEEe------chHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITD----QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHN-FDVVIWAAV------QTFQDD 223 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~-F~~~~wv~v------~~i~~~ 223 (779)
+.++||+.+++++.+++.. ..+..+.+.|+|.+|+||||||+.+++.. ... -..++|+.. ..+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5689999999999999876 22223489999999999999999999887 222 124566664 356777
Q ss_pred HHHHhCCCcchhhhhcchhhHHHHHHHhhC--CCcceeehhhcccc-----------ccc-cC---CCcEEEEEeCchhh
Q 004021 224 IGKRIGFSEDKKWKEKSLQDKAVDISSILS--PKKFRIDLTELGVP-----------LQM-LN---AGFKIVLKTRSAGV 286 (779)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~~~~ld~l~~~-----------~~~-~~---~gs~IivTTR~~~v 286 (779)
++..++.... ....+.......+...+. +++..+.+|++... +.. .. .+..||+||+....
T Consensus 94 l~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 94 IARSLNIPFP--RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHTTCCCC--SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHhCccCC--CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 7777764311 012233444555555553 44555666654221 100 11 46778888887643
Q ss_pred hhhc--------CCceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHh---------CCChhHHHHHHHH-
Q 004021 287 CDQM--------DSKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLAREC---------GRLPLALKTVGRA- 348 (779)
Q Consensus 287 a~~~--------~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c---------~glPLai~~~g~~- 348 (779)
.... ....+.+++++.++..+++...+..... ...--.+....|++.+ +|.|..+..+...
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 3222 1236999999999999999988754210 1112256788999999 7887554433322
Q ss_pred h--c---CC--CChhHHHHHHHHHhcccCcCCCchHHHHHHHHHHHhcCCccchhhhhhhccccC---CCcccChHHHHH
Q 004021 349 M--K---SQ--KKVGDRERAIEKMRTSASTFSGMEENVFLRLKFSYDSLSMDKLRSCLLYCCLYP---EDYKIPKRSLID 418 (779)
Q Consensus 349 l--~---~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp---~~~~i~~~~Li~ 418 (779)
. . .. -+.+....+...... ..+.-.+..|+. +.+.++..++.+. .+..+....+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 1 1 11 122222222222111 112234566777 6777776666543 221455566655
Q ss_pred HHHH----cCCCc-chhhHHHHHHHHHHccccccc
Q 004021 419 YWIS----EGFMA-DFDRGCEFINDLLHACLLEEE 448 (779)
Q Consensus 419 ~W~a----~g~~~-~~~~~~~~l~~L~~~sll~~~ 448 (779)
.+.. .|... .......++.+|...+++...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 317 SYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 4433 23222 125677889999999999874
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=1.4e-09 Score=102.59 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=87.8
Q ss_pred ccEEEcccccccccccCcc----ccccccccccccc-chhhcccccCceeeecCCcccccchh-hccCccCcEeeccCCc
Q 004021 497 AKRISLMANEIESLSEIPT----LLSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYTH 570 (779)
Q Consensus 497 lr~l~l~~~~~~~l~~~~~----lL~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~~ 570 (779)
.+.+++++|.+..+|.... .|+|++| .+..+ |..|.++++|++|+|++|.|+.+|.. |.++++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIPTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CcEEEeCCCCCCccCCCcCCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 3678888888888876433 5999999 88888 66899999999999999999999886 589999999999999
Q ss_pred CCCCCchhhhcCCccCcEeeeccccCCC
Q 004021 571 YLSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 571 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
.++.+|++.+..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7889998778999999999999998775
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.95 E-value=4.2e-10 Score=128.92 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=34.8
Q ss_pred CCCCCccEEEccCCCC-Cccc-cC-CCCCCCCccEEeeeCCCCCCC--CCCCCC-CcccccEEEechH
Q 004021 692 NFFTQLESLGILYGPD-LKSI-YP-NPLHFPKLKKIGVYGCPKLKK--LPINSS-SAKERRVVIEGLK 753 (779)
Q Consensus 692 ~~~~~L~~L~l~~~~~-l~~l-~~-~~~~l~~L~~L~l~~c~~L~~--lP~~~~-~~~~~~l~i~~~~ 753 (779)
.++++|+.|++++|++ +..- .. ....+++|++|++++|. +.. +|..+. ..+++.+.|++|+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 4577888888876543 2111 11 11247888999988875 432 232222 2345888888774
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.94 E-value=2.1e-10 Score=131.47 Aligned_cols=118 Identities=11% Similarity=0.077 Sum_probs=57.1
Q ss_pred hcccccCceeeecCCcccc-----cchhhccCccCcEeeccCCcCCC-----CCchhhhcCCccCcEeeeccccCCCccc
Q 004021 532 ISSLVSLHHLDLSLTHIRG-----LPQELKALEKLRYLNLEYTHYLS-----IIPHQLISGFLKLEVLRLLECGSEGVTK 601 (779)
Q Consensus 532 i~~L~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~l~~~~~l~-----~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 601 (779)
+.++++|++|+|++|.+.. ++..+.++++|++|++++|. +. .++.- +.++++|++|++.+|.+.+
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~--- 234 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETI-ARNCRSLVSVKVGDFEILE--- 234 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHH-HHHCTTCCEEECSSCBGGG---
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHH-HhhCCCCcEEeccCccHHH---
Confidence 3455666666666665432 22334455666666666552 22 22221 3455666666666554432
Q ss_pred ccCCccCCCchhhHHhhcCCCCCCceeEEeecc--------cccccCCCCCcc---------cCcccccccCcceEEecc
Q 004021 602 EEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSS--------LAVQKFFKYPKL---------DLTWLVFVQNLKELEIIV 664 (779)
Q Consensus 602 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~--------~~~~~~~~L~~L---------~~~~l~~l~~L~~L~L~~ 664 (779)
.+..+..+++|+.|+++.... ..+..+++|+.| .+..+..+++|++|+|++
T Consensus 235 ------------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 235 ------------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp ------------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETT
T ss_pred ------------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCC
Confidence 233444455555555542111 112233333333 122344566777777777
Q ss_pred cc
Q 004021 665 CT 666 (779)
Q Consensus 665 ~~ 666 (779)
|.
T Consensus 303 ~~ 304 (592)
T 3ogk_B 303 AL 304 (592)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=2.4e-10 Score=110.65 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=97.2
Q ss_pred ccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
|+|++| .+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .++.+|. ++.+++|++|++++|.+
T Consensus 53 L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~--~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 53 LALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp EECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH--HHHHHHSSEEEESEEEC
T ss_pred EECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc--cccCCCCCEEECCCCcC
Confidence 788888 888888 899999999999999999999998888999999999999 6788874 88999999999999988
Q ss_pred CCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCC-CCCcccCcccccccCcceEE
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFF-KYPKLDLTWLVFVQNLKELE 661 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~L~~L~~~~l~~l~~L~~L~ 661 (779)
.. ...+..+..+++|+.|+++.|.......-. .........+..+++|+.|+
T Consensus 128 ~~-------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 128 TN-------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CC-------------HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred Cc-------------hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 74 233457888999999999877653321100 00001112356788888886
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.86 E-value=2e-08 Score=100.42 Aligned_cols=187 Identities=12% Similarity=0.121 Sum_probs=108.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCc-
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSE- 232 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~- 232 (779)
..++||+..++.+..++..+. ..+.+.|+|.+|+||||||+.+++.. .....+.. +.+. ......+........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 98 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA--TPCGVCDNCREIEQGRFVDLI 98 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCS--SCCSCSHHHHHHHTTCCSSEE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC--CCCcccHHHHHHhccCCcceE
Confidence 468999999999999998753 23588999999999999999999876 22111100 0000 000111111000000
Q ss_pred chhhhhcchhhHHHHHHHhh-----CCCcceeehhhcccc-----------ccccCCCcEEEEEeCchh-hhhhc-C-Cc
Q 004021 233 DKKWKEKSLQDKAVDISSIL-----SPKKFRIDLTELGVP-----------LQMLNAGFKIVLKTRSAG-VCDQM-D-SK 293 (779)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~L-----~~kr~~~~ld~l~~~-----------~~~~~~gs~IivTTR~~~-va~~~-~-~~ 293 (779)
...............+.+.+ .+++..+.+|++... +.....+..+|+||+... +.... . ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~ 178 (250)
T 1njg_A 99 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 178 (250)
T ss_dssp EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhh
Confidence 00000001111122222322 233455556655221 122245778888887643 22211 2 46
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRA 348 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~ 348 (779)
.+.+++++.++..+++...+.......+ .+....|++.|+|.|..+..+...
T Consensus 179 ~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 179 QFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7899999999999999988765432211 467889999999999998876654
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.84 E-value=4.8e-10 Score=128.55 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=34.1
Q ss_pred ccccccccccc--cchhhcccccCceeeecCCcccc-----cchhhccCccCcEeeccCCcCCCCCchh----hhcCCcc
Q 004021 517 LSLRRNDSLTE--LPSRISSLVSLHHLDLSLTHIRG-----LPQELKALEKLRYLNLEYTHYLSIIPHQ----LISGFLK 585 (779)
Q Consensus 517 L~L~~~~~l~~--lp~~i~~L~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~l~~~~~l~~lp~~----~i~~L~~ 585 (779)
|+|++|..++. ++..+.++++|++|+|++|.++. ++.....+++|++|++++|. ..++.. ++.++++
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPN 212 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTT
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCC
Confidence 45554433332 33333455556666665554432 22222344555555555552 122211 1233455
Q ss_pred CcEeeeccc
Q 004021 586 LEVLRLLEC 594 (779)
Q Consensus 586 L~~L~l~~~ 594 (779)
|++|++.+|
T Consensus 213 L~~L~L~~~ 221 (594)
T 2p1m_B 213 LKSLKLNRA 221 (594)
T ss_dssp CCEEECCTT
T ss_pred CcEEecCCC
Confidence 555555555
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=6.6e-08 Score=101.61 Aligned_cols=211 Identities=12% Similarity=0.048 Sum_probs=136.1
Q ss_pred cCCccEEEcccccccc--cccC----cccccccccccccccc-hhhcc--------cccCceeeecCCcccccchh-hcc
Q 004021 494 WEGAKRISLMANEIES--LSEI----PTLLSLRRNDSLTELP-SRISS--------LVSLHHLDLSLTHIRGLPQE-LKA 557 (779)
Q Consensus 494 ~~~lr~l~l~~~~~~~--l~~~----~~lL~L~~~~~l~~lp-~~i~~--------L~~L~~L~L~~~~i~~lp~~-~~~ 557 (779)
+.+++.|+|++|.+.. .... ..++.+..+ .+| ..|.+ +.+|+.|+|.+ .++.++.. |.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 4678899999888872 2211 012333333 343 34667 99999999998 88888764 899
Q ss_pred CccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC----CCcccccC-C--c------------------------
Q 004021 558 LEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS----EGVTKEEG-N--V------------------------ 606 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~----~~~~~~~~-~--~------------------------ 606 (779)
|++|+.|++.+| .+..+++..|..+.++..+....... ..+....+ + .
T Consensus 123 ~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 123 CDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp CTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred CcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 999999999998 56778887788877777776544110 00000000 0 0
Q ss_pred -------c-CCCchhhHHhhc-CCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccc
Q 004021 607 -------L-CDDAEPLMRELL-GLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKL 677 (779)
Q Consensus 607 -------~-~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 677 (779)
. ..........+. .+++|+.|+++.+ +++.+....+..+++|+.|+|..+ +..+..
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n---------~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~---- 266 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT---------NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ---- 266 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB---------CCCEECTTTTTTCTTCCEEECCTT--CCEECT----
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC---------CcceecHhhhhCCCCCCEEECCcc--cceehH----
Confidence 0 000000111111 2688999988733 355555566788889999999874 666665
Q ss_pred cCcccchhhccCCCCCCCCcc-EEEccCCCCCccccC-CCCCCCCccEEeeeCCCCCCCCCCCC
Q 004021 678 RDVSDISEIIGSEHNFFTQLE-SLGILYGPDLKSIYP-NPLHFPKLKKIGVYGCPKLKKLPINS 739 (779)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~L~~lP~~~ 739 (779)
..+.++++|+ .|.+.+ +++.++. .+..+++|+.|++.+ .+++.++...
T Consensus 267 -----------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~a 316 (329)
T 3sb4_A 267 -----------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDEL 316 (329)
T ss_dssp -----------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTT
T ss_pred -----------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhh
Confidence 5778889998 999986 6777765 455788999999865 3577777643
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.70 E-value=2.3e-07 Score=91.20 Aligned_cols=167 Identities=15% Similarity=0.153 Sum_probs=101.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD-VVIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~-~~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
..++|+++.++.+.+++... ..+.+.|+|.+|+|||++|+.+++.. .. ..+. ..+.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~-~~-~~~~~~~~~~~~~~-------------- 78 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDL-FG-ENWRDNFIEMNASD-------------- 78 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHH-HG-GGGGGGEEEEETTC--------------
T ss_pred HHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH-hc-cccccceEEecccc--------------
Confidence 46899999999999999876 33448999999999999999999875 11 1111 122222100
Q ss_pred hhhhhcchhhHHHHHHHhh------CCCcceeehhhcccc-----------ccccCCCcEEEEEeCchhh-hhhc-C-Cc
Q 004021 234 KKWKEKSLQDKAVDISSIL------SPKKFRIDLTELGVP-----------LQMLNAGFKIVLKTRSAGV-CDQM-D-SK 293 (779)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~L------~~kr~~~~ld~l~~~-----------~~~~~~gs~IivTTR~~~v-a~~~-~-~~ 293 (779)
..........+.... .+++..+.+|++... +.....+.++|+||+...- .... . ..
T Consensus 79 ----~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 79 ----ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp ----TTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred ----ccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 000111111122221 123334444444221 1223456788988886432 1111 2 34
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVG 346 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g 346 (779)
.+.+.+++.++..+++.+.+.......+ .+....|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999999988765432211 4677889999999998655443
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=9.1e-08 Score=100.53 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=99.7
Q ss_pred CccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccC------CCchhh--------HHhhcCCCC
Q 004021 558 LEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLC------DDAEPL--------MRELLGLKR 623 (779)
Q Consensus 558 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~~--------~~~l~~L~~ 623 (779)
+++|+.|++.+ .++.++.+.|.++++|+.|++..|.+..++...+.... ...... ...+..+.+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 99999999998 47889998899999999999999877654433322100 000000 000111111
Q ss_pred CC-ceeEEeeccccc--------ccCCCCCcccC---------ccc-ccccCcceEEeccccccceecccccccCcccch
Q 004021 624 LN-VLSWSFRSSLAV--------QKFFKYPKLDL---------TWL-VFVQNLKELEIIVCTEMEEIICVDKLRDVSDIS 684 (779)
Q Consensus 624 L~-~L~l~~~~~~~~--------~~~~~L~~L~~---------~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 684 (779)
|+ .+.+.. ...+ ....++..+.. ..+ ..+++|+.|+|++|+ +..++.
T Consensus 178 L~~~i~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~----------- 243 (329)
T 3sb4_A 178 LETTIQVGA--MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPD----------- 243 (329)
T ss_dssp CEEEEEECT--TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECT-----------
T ss_pred cceeEEecC--CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecH-----------
Confidence 11 011100 0000 00111111100 001 137899999999854 677766
Q ss_pred hhccCCCCCCCCccEEEccCCCCCccccCC-CCCCCCcc-EEeeeCCCCCCCCCCCC-CCc-ccccEEEe
Q 004021 685 EIIGSEHNFFTQLESLGILYGPDLKSIYPN-PLHFPKLK-KIGVYGCPKLKKLPINS-SSA-KERRVVIE 750 (779)
Q Consensus 685 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~-~L~l~~c~~L~~lP~~~-~~~-~~~~l~i~ 750 (779)
..+.++++|+.|.|.+ +++.++.. +..+++|+ .+.+.+ +++.++... ..+ .++.+.+.
T Consensus 244 ----~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 244 ----FTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp ----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred ----hhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 5788999999999987 48888774 45788999 999987 688887543 222 33656553
No 154
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.65 E-value=3.3e-09 Score=121.48 Aligned_cols=37 Identities=14% Similarity=-0.055 Sum_probs=22.6
Q ss_pred CCCCCccEEEccCCCCCcccc-CCCC-CCCCccEEeeeCCC
Q 004021 692 NFFTQLESLGILYGPDLKSIY-PNPL-HFPKLKKIGVYGCP 730 (779)
Q Consensus 692 ~~~~~L~~L~l~~~~~l~~l~-~~~~-~l~~L~~L~l~~c~ 730 (779)
..+++|+.|++++ .+.... ..+. .+++|+.|++++|.
T Consensus 429 ~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 429 EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred hhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence 4567788887755 332211 1122 37889999998875
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.60 E-value=4e-07 Score=95.37 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=106.0
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEech--HHHHHHHHhC
Q 004021 155 QTIVGQEKLLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQT--FQDDIGKRIG 229 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~--i~~~i~~~l~ 229 (779)
..++|++..++.+.+++... ......|.|+|.+|+|||++|+++++.. ...| .++.... -..++...+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~---~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNL---RVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCCE---EEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCCE---EEEeccccCChHHHHHHHH
Confidence 56899999999988887631 2244678899999999999999999876 2222 3343311 1122222222
Q ss_pred C----Ccc---hhhhhcchhhHHHHHHHhhCCCcceeehhhcccc--ccccCCCcEEEEEeCchh-hhhhc-C--CceeE
Q 004021 230 F----SED---KKWKEKSLQDKAVDISSILSPKKFRIDLTELGVP--LQMLNAGFKIVLKTRSAG-VCDQM-D--SKNLE 296 (779)
Q Consensus 230 ~----~~~---~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~--~~~~~~gs~IivTTR~~~-va~~~-~--~~~~~ 296 (779)
. ... +..+..+ ......+...+.+..+..+...-... ......+..+|.||.... +...+ . ...+.
T Consensus 86 ~~~~~~~~l~lDEi~~l~-~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~ 164 (324)
T 1hqc_A 86 NSLEEGDILFIDEIHRLS-RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEH 164 (324)
T ss_dssp TTCCTTCEEEETTTTSCC-HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEE
T ss_pred HhccCCCEEEEECCcccc-cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEe
Confidence 1 100 0001111 22344455555554443322211000 001113456777776532 21111 1 35789
Q ss_pred ccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHHh
Q 004021 297 VYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRAM 349 (779)
Q Consensus 297 l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~l 349 (779)
+.+++.++...++.+.+....... -.+....+++.|+|.|-.+..+...+
T Consensus 165 l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 165 LEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999999988876543222 25678899999999998887665543
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=4.3e-08 Score=103.89 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=62.7
Q ss_pred EEEcccc-cccccccCcc-----cccccc-cccccccc-hhhcccccCceeeecCCcccccch-hhccCccCcEeeccCC
Q 004021 499 RISLMAN-EIESLSEIPT-----LLSLRR-NDSLTELP-SRISSLVSLHHLDLSLTHIRGLPQ-ELKALEKLRYLNLEYT 569 (779)
Q Consensus 499 ~l~l~~~-~~~~l~~~~~-----lL~L~~-~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~ 569 (779)
.++++++ .+..+|.... .|+|++ | .+..+| ..|++|.+|++|+|++|.|+.+|+ .|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566665 5666655222 277775 6 677665 457777777777777777777654 4677777777777777
Q ss_pred cCCCCCchhhhcCCccCcEeeeccccCCC
Q 004021 570 HYLSIIPHQLISGFLKLEVLRLLECGSEG 598 (779)
Q Consensus 570 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 598 (779)
.+..+|++.+..+. |++|++.+|.+..
T Consensus 91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 -ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred -ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 56677766444444 7777777776553
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=9.7e-07 Score=92.30 Aligned_cols=170 Identities=14% Similarity=0.194 Sum_probs=101.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD-VVIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~-~~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
..++|++..++.+.+++..+ ..+.+.|+|++|+||||+|+.+++.. .. ..+. ..+++.... .
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l-~~-~~~~~~~~~~~~~~-------------~ 83 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHEL-LG-RSYADGVLELNASD-------------D 83 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHH-HG-GGHHHHEEEECTTS-------------C
T ss_pred HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHh-cC-CcccCCEEEecCcc-------------c
Confidence 56899999999999999876 33348999999999999999999875 11 1111 122222110 0
Q ss_pred hhhhhcchhhHHHHHHH---hh-CCCcceeehhhcccc-----------ccccCCCcEEEEEeCchh-hhhhc-C-Ccee
Q 004021 234 KKWKEKSLQDKAVDISS---IL-SPKKFRIDLTELGVP-----------LQMLNAGFKIVLKTRSAG-VCDQM-D-SKNL 295 (779)
Q Consensus 234 ~~~~~~~~~~~~~~l~~---~L-~~kr~~~~ld~l~~~-----------~~~~~~gs~IivTTR~~~-va~~~-~-~~~~ 295 (779)
.......+....+.. .+ .+++..+.+|++... +.....++.+|+||+... +.... . ...+
T Consensus 84 --~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 84 --RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp --CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred --cChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 000011111111110 11 233445555554221 122245678888887633 22222 2 4588
Q ss_pred EccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhH-HHHHH
Q 004021 296 EVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLA-LKTVG 346 (779)
Q Consensus 296 ~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLa-i~~~g 346 (779)
.+.+++.++..+++...+...+...+ .+....|++.|+|.|.. +..+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999988764432211 46778999999999954 44443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.43 E-value=2.6e-07 Score=97.86 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=81.8
Q ss_pred ccccccccccccchhhcccccCceeeecC-Ccccccc-hhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 517 LSLRRNDSLTELPSRISSLVSLHHLDLSL-THIRGLP-QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 517 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~-~~i~~lp-~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
++++++..+..+|. |..+.+|++|+|++ |.++.+| ..|++|++|++|+|++| .++.+|++.|++|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 46666436888999 99999999999996 9999988 46999999999999999 688888776899999999999999
Q ss_pred cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeeccc
Q 004021 595 GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSL 635 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 635 (779)
.+..++. ..+..++ |+.|++..|...
T Consensus 91 ~l~~~~~--------------~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSW--------------KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCS--------------TTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCH--------------HHcccCC-ceEEEeeCCCcc
Confidence 8886332 2233344 888888866543
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=5.8e-06 Score=88.83 Aligned_cols=187 Identities=17% Similarity=0.044 Sum_probs=109.5
Q ss_pred ccccc-chhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccc
Q 004021 524 SLTEL-PSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKE 602 (779)
Q Consensus 524 ~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 602 (779)
.+..+ +..|.++.+|+.+++.+|.++.+|...-...+|+.+.+..+ ++.++...|.++++|+.+.+..+ +..++..
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~ 243 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE 243 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTT
T ss_pred CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccc
Confidence 35555 34677888899999988888888776544688888888754 77888877888888888888753 2221111
Q ss_pred cCCc-------cCCC-chhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceeccc
Q 004021 603 EGNV-------LCDD-AEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICV 674 (779)
Q Consensus 603 ~~~~-------~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 674 (779)
.+.. +++. .......+.++++|+.+.+..+... -..+..+....+..+++|+.+.|.. .+..+..
T Consensus 244 aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~----~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~- 316 (401)
T 4fdw_A 244 AFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFN----DDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ- 316 (401)
T ss_dssp TTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCC----CCTTCEECTTTTTTCTTCCEECCCT--TCCEECT-
T ss_pred ccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcccc----CCcccEECHHHhhCCccCCeEEeCC--ceEEEhh-
Confidence 1100 0000 0001112333334444433321110 0011122334456677777777763 3555544
Q ss_pred ccccCcccchhhccCCCCCCCCccEEEccCCCCCccccCCC-CCCCCccEEeeeCCCCCCCCCCC
Q 004021 675 DKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYPNP-LHFPKLKKIGVYGCPKLKKLPIN 738 (779)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~L~~lP~~ 738 (779)
..+.++++|+.+.|.+ +++.+.... ..+ +|+.|.+.++ .+..++..
T Consensus 317 --------------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~ 363 (401)
T 4fdw_A 317 --------------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEK 363 (401)
T ss_dssp --------------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCS
T ss_pred --------------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccc
Confidence 4677888999999864 577776643 356 8999999875 45555543
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.34 E-value=2.8e-07 Score=97.31 Aligned_cols=171 Identities=18% Similarity=0.095 Sum_probs=110.0
Q ss_pred ccchhhcccccCceeeecCCcc----------cccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccC
Q 004021 527 ELPSRISSLVSLHHLDLSLTHI----------RGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 527 ~lp~~i~~L~~L~~L~L~~~~i----------~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
.++.++.++++|+.|.+..... ..++..+..+++|+.|+|++|..+ .+|. + .+++|++|++..|.+
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCC
Confidence 4566677888999998865422 135566788899999999988433 4555 4 388999999998876
Q ss_pred CCcccccCCccCCCchhhHHhhc--CCCCCCceeEEeecccccccCCCCCcccC-cccccccCcceEEeccccccceecc
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELL--GLKRLNVLSWSFRSSLAVQKFFKYPKLDL-TWLVFVQNLKELEIIVCTEMEEIIC 673 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~L~l~~~~~~~~~~~~~L~~L~~-~~l~~l~~L~~L~L~~~~~~~~~~~ 673 (779)
.. .....+. .+++|+.|+|+.+.... .....++.+.. .....+|+|++|.|++|........
T Consensus 206 ~~--------------~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 206 PD--------------SVVEDILGSDLPNLEKLVLYVGVEDY-GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp CH--------------HHHHHHHHSBCTTCCEEEEECBCGGG-TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred Ch--------------HHHHHHHHccCCCCcEEEEecccccc-ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 52 4444554 78999999987421110 00111111110 0113579999999998765432211
Q ss_pred cccccCcccchhhccCCCCCCCCccEEEccCCCCCcc-----ccCCCCCCCCccEEeeeCCC
Q 004021 674 VDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKS-----IYPNPLHFPKLKKIGVYGCP 730 (779)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~ 730 (779)
.+ .....+|+|++|+|+. +.+.. +...+..+++|+.|++++|.
T Consensus 271 --------~l-----a~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 271 --------MF-----LESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp --------HH-----HHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred --------HH-----HhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 00 1224689999999986 56655 34444578999999999884
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.25 E-value=3e-05 Score=83.26 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=123.4
Q ss_pred ccccCCccEEEcccccccccccCcc----c--cccccccccccc-chhhcccccCceeeecCCcccccchh-hccCccCc
Q 004021 491 VKEWEGAKRISLMANEIESLSEIPT----L--LSLRRNDSLTEL-PSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLR 562 (779)
Q Consensus 491 ~~~~~~lr~l~l~~~~~~~l~~~~~----l--L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~ 562 (779)
...+.+++.+.+.+|.+..++.... | +.|.+ .+..+ +..|.++.+|+.+++..+ ++.++.. |.+ .+|+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 3456778888888887777766533 1 44443 35555 345778888999988764 6666554 555 7889
Q ss_pred EeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeecccccccCCC
Q 004021 563 YLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFK 642 (779)
Q Consensus 563 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 642 (779)
.+.+.++ +..++...|.++++|+.+.+.++.....+ ........+.++++|+.+.+. .+
T Consensus 252 ~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~---------~~~I~~~aF~~c~~L~~l~l~----------~~ 310 (401)
T 4fdw_A 252 TVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDP---------EAMIHPYCLEGCPKLARFEIP----------ES 310 (401)
T ss_dssp EEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCT---------TCEECTTTTTTCTTCCEECCC----------TT
T ss_pred EEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCc---------ccEECHHHhhCCccCCeEEeC----------Cc
Confidence 9988554 77888877889999999999877543100 001233457788888888774 34
Q ss_pred CCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCCCCCccccC
Q 004021 643 YPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYGPDLKSIYP 713 (779)
Q Consensus 643 L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (779)
++.+....+..+++|+.|.|..+ +..+.. ..+.++ +|+.+.+.+. .+..++.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~---------------~aF~~~-~L~~l~l~~n-~~~~l~~ 362 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN--VTQINF---------------SAFNNT-GIKEVKVEGT-TPPQVFE 362 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT--CCEECT---------------TSSSSS-CCCEEEECCS-SCCBCCC
T ss_pred eEEEhhhhhcCCCCccEEEECcc--ccEEcH---------------HhCCCC-CCCEEEEcCC-CCccccc
Confidence 66666677888999999999653 666654 477788 9999999974 4444443
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=7.5e-06 Score=85.63 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=101.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCC-CEEEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNF-DVVIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F-~~~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
..++|++..++.+.+++..+ ..+.+.|+|.+|+||||+|+.+++.. .. ..+ ...+.+......
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l-~~-~~~~~~~~~~~~~~~~------------ 88 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALAREL-FG-ENWRHNFLELNASDER------------ 88 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHH-HG-GGHHHHEEEEETTCHH------------
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHh-cC-CcccCceEEeeccccC------------
Confidence 45899999999999999876 44458999999999999999999875 11 111 112222221100
Q ss_pred hhhhhcchhhHHHHHHHh--hC-CCcceeehhhcccc-----------ccccCCCcEEEEEeCchh-hhhhcC--CceeE
Q 004021 234 KKWKEKSLQDKAVDISSI--LS-PKKFRIDLTELGVP-----------LQMLNAGFKIVLKTRSAG-VCDQMD--SKNLE 296 (779)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~--L~-~kr~~~~ld~l~~~-----------~~~~~~gs~IivTTR~~~-va~~~~--~~~~~ 296 (779)
......+........ +. +++..+.+|++... +.....++++|+||+... +..... ...+.
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 89 ---GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp ---HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred ---chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 000000011111100 11 23334444443211 122345678888887643 222211 34789
Q ss_pred ccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 004021 297 VYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVGRA 348 (779)
Q Consensus 297 l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~ 348 (779)
+.+++.++...++...+.......+ .+....|++.++|.|..+..+...
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999888764432211 467788999999999876654443
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.13 E-value=1.8e-05 Score=78.47 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=90.7
Q ss_pred ccccchh---hhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCC
Q 004021 155 QTIVGQE---KLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFS 231 (779)
Q Consensus 155 ~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~ 231 (779)
..|+|.+ ..++.+..++..+ ..+.+.|+|.+|+||||||+.+++.. . .....+.|+....+...+...+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~- 101 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARA-N--ELERRSFYIPLGIHASISTALLEG- 101 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEEGGGGGGSCGGGGTT-
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHHHHHHHHHHHHHh-
Confidence 4567633 4455555555543 45788999999999999999999877 2 223345666663322211111100
Q ss_pred cchhhhhcchhhHHHHHHHhhCCCcceeehhhcccc-------------ccc-cCCCc-EEEEEeCchh---------hh
Q 004021 232 EDKKWKEKSLQDKAVDISSILSPKKFRIDLTELGVP-------------LQM-LNAGF-KIVLKTRSAG---------VC 287 (779)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~-------------~~~-~~~gs-~IivTTR~~~---------va 287 (779)
+. +...+.+|++... +.. ...+. ++|+||+... +.
T Consensus 102 --------------------~~-~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~ 160 (242)
T 3bos_A 102 --------------------LE-QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLV 160 (242)
T ss_dssp --------------------GG-GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHH
T ss_pred --------------------cc-CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhh
Confidence 00 0112222222110 000 01222 4788776422 11
Q ss_pred hhcC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 288 DQMD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 288 ~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
..+. ...+.+++++.++..+++...+....... -.+....|++.++|.+-.+..+
T Consensus 161 ~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 161 SRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHH
Confidence 1121 36889999999999999998876433222 2567788999999988766544
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.11 E-value=2.2e-07 Score=98.86 Aligned_cols=115 Identities=18% Similarity=0.113 Sum_probs=51.6
Q ss_pred ccCceeeecCCcccc--cchhhccCccCcEeeccCCcCCCCCchhhh-----cCCccCcEeeeccccCCCcccccCCccC
Q 004021 536 VSLHHLDLSLTHIRG--LPQELKALEKLRYLNLEYTHYLSIIPHQLI-----SGFLKLEVLRLLECGSEGVTKEEGNVLC 608 (779)
Q Consensus 536 ~~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i-----~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 608 (779)
.+|++|+|++|.++. +..-...+++|++|+|++| .++......+ ...++|++|++++|.+...
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~--------- 170 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA--------- 170 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH---------
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH---------
Confidence 456666666665543 1111233455666666666 3332221111 2345566666666654320
Q ss_pred CCchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEecccc
Q 004021 609 DDAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCT 666 (779)
Q Consensus 609 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~ 666 (779)
........+..+++|++|+++.|.....+. .. ....+...++|+.|+|++|.
T Consensus 171 -~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~----~~-L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 171 -GVAVLMEGLAGNTSVTHLSLLHTGLGDEGL----EL-LAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp -HHHHHHHHHHTCSSCCEEECTTSSCHHHHH----HH-HHHHGGGCSCCCEEECCSSC
T ss_pred -HHHHHHHHHhcCCCcCEEeCCCCCCCcHHH----HH-HHHHHhcCCCcCeEECCCCC
Confidence 001223334555666666665443221000 00 01223344566777776654
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.10 E-value=6e-05 Score=81.87 Aligned_cols=172 Identities=14% Similarity=0.164 Sum_probs=99.6
Q ss_pred ccc-chhhh--HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCc
Q 004021 156 TIV-GQEKL--LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSE 232 (779)
Q Consensus 156 ~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~ 232 (779)
.|+ |.... ...+........ ....+.|+|.+|+||||||+.+++... ....-..+++++...+..++...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~-~~~~~~~v~~v~~~~~~~~~~~~~~~~- 182 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITSEKFLNDLVDSMKEG- 182 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHH-HHCCSSCEEEEEHHHHHHHHHHHHHTT-
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeHHHHHHHHHHHHHcc-
Confidence 444 65433 333333333332 267889999999999999999998762 111112345666655555555444321
Q ss_pred chhhhhcchhhHHHHHHHhhCCCcceeehhhccccc----------c----ccCCCcEEEEEeCch---------hhhhh
Q 004021 233 DKKWKEKSLQDKAVDISSILSPKKFRIDLTELGVPL----------Q----MLNAGFKIVLKTRSA---------GVCDQ 289 (779)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~~~~----------~----~~~~gs~IivTTR~~---------~va~~ 289 (779)
. ...+...+..+...+.+|++.... . ....|..||+||.+. .+...
T Consensus 183 -------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR 251 (440)
T 2z4s_A 183 -------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSR 251 (440)
T ss_dssp -------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHH
T ss_pred -------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhh
Confidence 0 112333333233344445442111 0 024577899999862 12222
Q ss_pred cC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 290 MD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 290 ~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
+. ...+.+++++.++-.+++.+.+.......+ .+....|++.++|.+-.+..
T Consensus 252 ~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 252 FQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 32 357899999999999999988765432223 34567888999998865543
No 166
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.10 E-value=3.6e-05 Score=78.83 Aligned_cols=158 Identities=9% Similarity=0.046 Sum_probs=93.7
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccccC--CCCE--EEEEEe------chHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQH--NFDV--VIWAAV------QTFQD 222 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~--~F~~--~~wv~v------~~i~~ 222 (779)
..+.||++++++|...|... .+..+.+-|+|.+|+|||++|+.|++....... .... .+.++. ..+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 34799999999999888753 346778899999999999999999988722111 1112 334443 46788
Q ss_pred HHHHHhCCCcchhhhhcchhhHHHHHHHhh---CCCcceeehhhcccc---------ccc-cCCCcE--EEEEeCchhh-
Q 004021 223 DIGKRIGFSEDKKWKEKSLQDKAVDISSIL---SPKKFRIDLTELGVP---------LQM-LNAGFK--IVLKTRSAGV- 286 (779)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L---~~kr~~~~ld~l~~~---------~~~-~~~gs~--IivTTR~~~v- 286 (779)
.|++++... .. ......+....+...+ +++.+.+.+|++... +.+ ...+++ ||.++...+.
T Consensus 100 ~I~~~L~g~-~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 100 KIWFAISKE-NL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHSCC-C----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHhcCC-CC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 888888543 10 1111122223333333 334455555554221 110 013333 3344544322
Q ss_pred --------hhhcCCceeEccCCChHHHHHHHHHHhhc
Q 004021 287 --------CDQMDSKNLEVYSLAHDEAWKLFQEMIER 315 (779)
Q Consensus 287 --------a~~~~~~~~~l~~L~~~~a~~Lf~~~a~~ 315 (779)
...++...+.+++++.+|-.+++.+++..
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 12222357899999999999999988754
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=9.1e-07 Score=94.16 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=101.8
Q ss_pred CCccEEEcccccccccc---------cC-cc--ccccccccccccc--chhhcccccCceeeecCCccccc-----chhh
Q 004021 495 EGAKRISLMANEIESLS---------EI-PT--LLSLRRNDSLTEL--PSRISSLVSLHHLDLSLTHIRGL-----PQEL 555 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~---------~~-~~--lL~L~~~~~l~~l--p~~i~~L~~L~~L~L~~~~i~~l-----p~~~ 555 (779)
..++.|++++|.+.... .. .. -|+|++| .++.. ..-...+.+|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788888888775421 11 12 4889998 77542 22234577899999999988653 2223
Q ss_pred -ccCccCcEeeccCCcCCCC-----CchhhhcCCccCcEeeeccccCCCcccccCCccCCCchhhHHhhcCCCCCCceeE
Q 004021 556 -KALEKLRYLNLEYTHYLSI-----IPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSW 629 (779)
Q Consensus 556 -~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 629 (779)
...++|++|+|++| .++. ++.. +..+++|++|++++|.+... ........+...++|+.|++
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~----------g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDE----------GLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHH----------HHHHHHHHGGGCSCCCEEEC
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcH----------HHHHHHHHHhcCCCcCeEEC
Confidence 34678999999999 4543 4443 57889999999999987630 01223556778889999999
Q ss_pred EeecccccccCCCCCcccCcccccccCcceEEeccccc
Q 004021 630 SFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTE 667 (779)
Q Consensus 630 ~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~ 667 (779)
+.|.....+. .. ....+...++|++|+|++|..
T Consensus 219 s~N~i~~~g~----~~-l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 219 AYNGAGDTAA----LA-LARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CSSCCCHHHH----HH-HHHHHHHCSSCCEEECTTSSC
T ss_pred CCCCCCHHHH----HH-HHHHHHhCCCCCEEeccCCCC
Confidence 9665432100 00 012344568899999999753
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.03 E-value=6.6e-05 Score=80.01 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=101.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCc-c
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSE-D 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~-~ 233 (779)
..++|++..++.+.+.+..+. ....+.|+|.+|+||||+|+.+++.. .....+.... .........+...-.... .
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 92 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITATP-CGVCDNCREIEQGRFVDLIE 92 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSCSSC-CSSSHHHHHHHTSCCSSCEE
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCCCCC-CcccHHHHHHhccCCCceEE
Confidence 458999999999999997652 23578899999999999999998876 2111110000 000001111111000000 0
Q ss_pred -hhhhhcchhhHHHHHHHhhC-----CCcceeehhhcccc-----------ccccCCCcEEEEEeCchh-hhhhc-C-Cc
Q 004021 234 -KKWKEKSLQDKAVDISSILS-----PKKFRIDLTELGVP-----------LQMLNAGFKIVLKTRSAG-VCDQM-D-SK 293 (779)
Q Consensus 234 -~~~~~~~~~~~~~~l~~~L~-----~kr~~~~ld~l~~~-----------~~~~~~gs~IivTTR~~~-va~~~-~-~~ 293 (779)
........++ ...+.+.+. +++..+.+|++... +.....+..+|++|.... +.... . ..
T Consensus 93 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 171 (373)
T 1jr3_A 93 IDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 (373)
T ss_dssp EETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSE
T ss_pred ecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhee
Confidence 0000001111 222333332 22334444443211 112234566777776432 22222 2 46
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVG 346 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g 346 (779)
.+.+.+++.++...++.+.+...+...+ .+....|++.++|.|..+..+.
T Consensus 172 ~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 172 QFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred EeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 7899999999999999887754432211 4667889999999998876554
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=2.5e-05 Score=74.35 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=40.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+++++++.+.+... ..+.+.|+|.+|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999775 45678899999999999999999876
No 170
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.91 E-value=9.2e-05 Score=76.90 Aligned_cols=169 Identities=14% Similarity=0.171 Sum_probs=98.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD-VVIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~-~~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
..++|++..++.+.+++..+ ..+.+.++|.+|+|||++|+.+++.. . ...+. ..+.++... .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l-~-~~~~~~~~~~~~~~~-------------~ 79 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDL-F-GENWRDNFIEMNASD-------------E 79 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHH-H-TTCHHHHCEEEETTS-------------T
T ss_pred HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHh-c-CCcccCCeEEEeCcc-------------c
Confidence 45899999999999988775 33448999999999999999998875 1 11111 111122110 0
Q ss_pred hhhhhcchhhHHHHHHHh--hC-CCcceeehhhcc-----------ccccccCCCcEEEEEeCchh-hhhhc-C-CceeE
Q 004021 234 KKWKEKSLQDKAVDISSI--LS-PKKFRIDLTELG-----------VPLQMLNAGFKIVLKTRSAG-VCDQM-D-SKNLE 296 (779)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~--L~-~kr~~~~ld~l~-----------~~~~~~~~gs~IivTTR~~~-va~~~-~-~~~~~ 296 (779)
.......+........ +. +++..+.+|++. ..+.....++.+|+||.... +.... . ...+.
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 80 --RGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp --TCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred --cChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 0001111111111111 11 223334444431 11222235677888876543 22222 2 45789
Q ss_pred ccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 297 VYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 297 l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
+.+++.++...++...+...+...+ .+....|++.++|.+..+...
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999888765432211 466788899999998765543
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.88 E-value=0.00019 Score=75.25 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=102.7
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-----chHHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-----QTFQDDIGK 226 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-----~~i~~~i~~ 226 (779)
..++|++..++++..++... ......|.|+|.+|+|||++|+.+++.. ...| +.++. ..-...++.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~~~~~~ 102 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDLAAILT 102 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHHHHHHH
Confidence 56899999999999888653 2345678999999999999999998876 2332 22222 112222222
Q ss_pred HhCCCcc---hhhhhcchhhHHHHHHHhhCCCcceeehhhcc--ccccccCCCcEEEEEeCchhh-hhh-cC--CceeEc
Q 004021 227 RIGFSED---KKWKEKSLQDKAVDISSILSPKKFRIDLTELG--VPLQMLNAGFKIVLKTRSAGV-CDQ-MD--SKNLEV 297 (779)
Q Consensus 227 ~l~~~~~---~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~--~~~~~~~~gs~IivTTR~~~v-a~~-~~--~~~~~l 297 (779)
....... +..+.. ....+..+...+++.++..+...-. .......++..+|.||..... ... .. ...+.+
T Consensus 103 ~~~~~~vl~lDEi~~l-~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l 181 (338)
T 3pfi_A 103 NLSEGDILFIDEIHRL-SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRL 181 (338)
T ss_dssp TCCTTCEEEEETGGGC-CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred hccCCCEEEEechhhc-CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeC
Confidence 2211100 000111 1344555666666655432221100 001111124567766665332 111 11 367899
Q ss_pred cCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 298 YSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 298 ~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
.+++.++...++.+.+....... -.+....|++.+.|.|-.+..+
T Consensus 182 ~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 182 EFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999988876533111 2567788899999999655543
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=0.00015 Score=80.62 Aligned_cols=176 Identities=14% Similarity=0.123 Sum_probs=99.5
Q ss_pred ccccchhhhHHHHHHHHhcc---------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe--
Q 004021 155 QTIVGQEKLLPRVWRCITDQ---------------QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-- 217 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-- 217 (779)
..++|++..++++.+++... .+..+.+.|+|.+|+||||+|+.+++.. .+. ++.++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~~-~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GYD-ILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TCE-EEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEeCCC
Confidence 56899999999999999751 0134789999999999999999999876 122 223333
Q ss_pred ---chHHHHHHHHhCCCcchhhhhcchhhHHHHHHH--hhCCCcceeehhhccccccc------------cCCCcEEEEE
Q 004021 218 ---QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISS--ILSPKKFRIDLTELGVPLQM------------LNAGFKIVLK 280 (779)
Q Consensus 218 ---~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~L~~kr~~~~ld~l~~~~~~------------~~~gs~IivT 280 (779)
..+....+...... .+.........+ ...+++..+.+|++...... ...+..||++
T Consensus 113 ~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli 185 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDN-------MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI 185 (516)
T ss_dssp CCCHHHHHHTGGGGTTB-------CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEE
T ss_pred cchHHHHHHHHHHHhcc-------ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEE
Confidence 11222222111100 000000000000 01233445555555322110 1134456666
Q ss_pred eCchh---hhhhcC-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCC-ChhHHHHHH
Q 004021 281 TRSAG---VCDQMD-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGR-LPLALKTVG 346 (779)
Q Consensus 281 TR~~~---va~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~~g 346 (779)
+.... +..... ...+.+++++.++..+.+...+.......+ .+....|++.++| ++-++..+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 65432 222222 567899999999999999887765443333 3457789999999 555555543
No 173
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=2.2e-05 Score=72.57 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=36.5
Q ss_pred cchhhcccccCceeeecCCccccc-chhhccCccCcEeeccCCcCCCCCchhhhcCC----ccCcEeeecccc
Q 004021 528 LPSRISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHYLSIIPHQLISGF----LKLEVLRLLECG 595 (779)
Q Consensus 528 lp~~i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L----~~L~~L~l~~~~ 595 (779)
+|.....-.+|+.||+++|.|+.. -..+..+++|++|+|++|..++.---..++.+ ++|++|++++|.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 454332335677888887766542 12356677777777777754432111113333 246666666654
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.77 E-value=0.00011 Score=75.08 Aligned_cols=48 Identities=31% Similarity=0.333 Sum_probs=39.7
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.++.+++|.+.+... -...+-+.|+|.+|+|||+||+++++..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 56899999999998887531 1245678999999999999999999876
No 175
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.76 E-value=0.0007 Score=70.40 Aligned_cols=157 Identities=15% Similarity=0.221 Sum_probs=87.6
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCCcchhhhhcchhh
Q 004021 164 LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFSEDKKWKEKSLQD 243 (779)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~~~~~~~~~~~~~ 243 (779)
...+...+..+......+.|+|.+|+||||||+.+++.. ... . ..+++++...+...+...+... ..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~-~~~-~-~~~~~i~~~~~~~~~~~~~~~~--------~~-- 89 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA-KKR-G-YRVIYSSADDFAQAMVEHLKKG--------TI-- 89 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH-HHT-T-CCEEEEEHHHHHHHHHHHHHHT--------CH--
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH-HHC-C-CEEEEEEHHHHHHHHHHHHHcC--------cH--
Confidence 344444444433245678999999999999999999876 211 2 2345666555544444333211 01
Q ss_pred HHHHHHHhhCCCcceeehhhcccc-------------cc-ccCCCcEEEEEeCchh---------hhhhcC-CceeEccC
Q 004021 244 KAVDISSILSPKKFRIDLTELGVP-------------LQ-MLNAGFKIVLKTRSAG---------VCDQMD-SKNLEVYS 299 (779)
Q Consensus 244 ~~~~l~~~L~~kr~~~~ld~l~~~-------------~~-~~~~gs~IivTTR~~~---------va~~~~-~~~~~l~~ 299 (779)
..+...+.+ ...+.+|++... +. ....|..||+||.... +...+. ...+.+++
T Consensus 90 --~~~~~~~~~-~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 90 --NEFRNMYKS-VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp --HHHHHHHHT-CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred --HHHHHHhcC-CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC
Confidence 111222222 223334443211 00 0134667888886421 122222 35789999
Q ss_pred CChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhH
Q 004021 300 LAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLA 341 (779)
Q Consensus 300 L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLa 341 (779)
+.++-.+++...+.......+ .+....|++.+ |.+-.
T Consensus 167 -~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 167 -DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp -CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred -CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 999999999988765432222 56678888888 76543
No 176
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=1.5e-05 Score=79.62 Aligned_cols=78 Identities=21% Similarity=0.155 Sum_probs=56.0
Q ss_pred ccccccccccccchh----hcccccCceeeecCCcccccc---hhhccCccCcEeeccCCcCCCCCchhhhcCCc--cCc
Q 004021 517 LSLRRNDSLTELPSR----ISSLVSLHHLDLSLTHIRGLP---QELKALEKLRYLNLEYTHYLSIIPHQLISGFL--KLE 587 (779)
Q Consensus 517 L~L~~~~~l~~lp~~----i~~L~~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~--~L~ 587 (779)
++++.| ....++.. ..++++|+.|+|++|.|+.++ ..+.++++|++|+|++| .+..+.. +..+. +|+
T Consensus 148 l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~ 223 (267)
T 3rw6_A 148 IDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLE 223 (267)
T ss_dssp CCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCS
T ss_pred ccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcc
Confidence 445555 44444432 256889999999999887654 56778999999999999 5676633 55555 899
Q ss_pred EeeeccccCCC
Q 004021 588 VLRLLECGSEG 598 (779)
Q Consensus 588 ~L~l~~~~~~~ 598 (779)
+|++.+|.+.+
T Consensus 224 ~L~L~~Npl~~ 234 (267)
T 3rw6_A 224 ELWLDGNSLCD 234 (267)
T ss_dssp EEECTTSTTGG
T ss_pred eEEccCCcCcc
Confidence 99999988763
No 177
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=4e-05 Score=70.83 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=53.3
Q ss_pred cccccccccccc-chhhcccccCceeeecCC-ccccc-chhhccC----ccCcEeeccCCcCCCCCchhhhcCCccCcEe
Q 004021 517 LSLRRNDSLTEL-PSRISSLVSLHHLDLSLT-HIRGL-PQELKAL----EKLRYLNLEYTHYLSIIPHQLISGFLKLEVL 589 (779)
Q Consensus 517 L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~-~i~~l-p~~~~~L----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 589 (779)
|||++| .++.. -..+.++++|++|+|++| .|+.- -..+..+ ++|++|+|++|..++.---..+.++++|++|
T Consensus 66 LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L 144 (176)
T 3e4g_A 66 IDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYL 144 (176)
T ss_dssp EEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEE
T ss_pred EeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEE
Confidence 888888 56643 345678888888888888 46541 1234443 4688888888866554221226678888888
Q ss_pred eeccccCC
Q 004021 590 RLLECGSE 597 (779)
Q Consensus 590 ~l~~~~~~ 597 (779)
++++|...
T Consensus 145 ~L~~c~~I 152 (176)
T 3e4g_A 145 FLSDLPGV 152 (176)
T ss_dssp EEESCTTC
T ss_pred ECCCCCCC
Confidence 88887643
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00029 Score=74.26 Aligned_cols=177 Identities=12% Similarity=0.092 Sum_probs=96.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccc-cCCCCEEEEEEech-----HHHHHHHHh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ-QHNFDVVIWAAVQT-----FQDDIGKRI 228 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~-~~~F~~~~wv~v~~-----i~~~i~~~l 228 (779)
..++|+++.++.+..++..+ ..+.+.|+|.+|+||||+|+.+++..... ...+. ...+...+ ...+....+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR-ILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS-EEEECSSSCCCHHHHTTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc-eEEEccccccchHHHHHHHHHH
Confidence 46899999999999998776 33338999999999999999998875100 01111 11222210 111111100
Q ss_pred CCCcchhhhhcchhhHHHHHHHhhC-CCcceeehhhcccc-----------ccccCCCcEEEEEeCch-hhhhhcC--Cc
Q 004021 229 GFSEDKKWKEKSLQDKAVDISSILS-PKKFRIDLTELGVP-----------LQMLNAGFKIVLKTRSA-GVCDQMD--SK 293 (779)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~~~~ld~l~~~-----------~~~~~~gs~IivTTR~~-~va~~~~--~~ 293 (779)
... . ....... ...... +++-.+.+|++... +.......++|++|... .+..... ..
T Consensus 114 ~~~-~---~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 114 ARL-T---VSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHS-C---CCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred hhh-c---ccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 000 0 0000000 000001 11113334443211 11223456777777543 2322222 45
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
.+.+.+++.++....+...+.......+ ++....|++.++|.|-.+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999999887754432222 567889999999998865543
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.65 E-value=0.00094 Score=69.30 Aligned_cols=170 Identities=14% Similarity=0.070 Sum_probs=93.5
Q ss_pred ccccchhhhHHHHHHHHhc----------cCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITD----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
..++|.+..++.|.+.+.- .....+-|.++|.+|+|||+||+++++.. ...| +.++...+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~~l~~-- 89 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSSDLVS-- 89 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHHHHHT--
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchHHHhh--
Confidence 5689999999999988731 11234578999999999999999999876 2222 2233222211
Q ss_pred HHHhCCCcchhhhhcchhhHHHHHHHhh-CCCcceeehhhccccc-------------------------cccCCCcEEE
Q 004021 225 GKRIGFSEDKKWKEKSLQDKAVDISSIL-SPKKFRIDLTELGVPL-------------------------QMLNAGFKIV 278 (779)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~~~~ld~l~~~~-------------------------~~~~~gs~Ii 278 (779)
.. .. ..+.....+.... ..+...+.+|++.... .....+..||
T Consensus 90 --~~--------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 158 (322)
T 3eie_A 90 --KW--------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 158 (322)
T ss_dssp --TT--------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEE
T ss_pred --cc--------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEE
Confidence 00 00 0111111111111 1222233333332111 0122345666
Q ss_pred EEeCchhhh-hhc--C-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCC-ChhHHHHHH
Q 004021 279 LKTRSAGVC-DQM--D-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGR-LPLALKTVG 346 (779)
Q Consensus 279 vTTR~~~va-~~~--~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~~g 346 (779)
.||...... ..+ . ...+.++..+.++-.++|...+....... -......|++.+.| .+-.|..+.
T Consensus 159 ~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 159 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 677753321 111 1 45678888999999999998876533111 14556788888887 454555443
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.56 E-value=0.0012 Score=69.65 Aligned_cols=171 Identities=12% Similarity=0.071 Sum_probs=92.7
Q ss_pred ccccchhhhHHHHHHHHhc----------cCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITD----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
..++|.+..++.|.+.+.. .....+-|.|+|.+|+|||+||+++++.. ... .+.++...+...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GAT---FFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCE---EEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCe---EEEEehHHhhcc-
Confidence 4689999999999888753 11245678999999999999999998875 222 233333211100
Q ss_pred HHHhCCCcchhhhhcchhhHHHHHHHhh-CCCcceeehhhcccc----------------------cc----ccCCCcEE
Q 004021 225 GKRIGFSEDKKWKEKSLQDKAVDISSIL-SPKKFRIDLTELGVP----------------------LQ----MLNAGFKI 277 (779)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~~~~ld~l~~~----------------------~~----~~~~gs~I 277 (779)
. .. ........+.... ..+...+.+|++... +. ....+..|
T Consensus 157 ------~-----~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~v 224 (357)
T 3d8b_A 157 ------W-----VG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV 224 (357)
T ss_dssp ------S-----TT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEE
T ss_pred ------c-----cc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEE
Confidence 0 00 0001111111111 112222223322100 00 01234456
Q ss_pred EEEeCchh-hhhhc--C-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCC-ChhHHHHHHH
Q 004021 278 VLKTRSAG-VCDQM--D-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGR-LPLALKTVGR 347 (779)
Q Consensus 278 ivTTR~~~-va~~~--~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~~g~ 347 (779)
|.||.... +.... . ...+.+...+.++..+++...+....... -.+....|++.+.| .+-.+..+..
T Consensus 225 I~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 225 VGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66776532 21111 1 35678888999999999888775432111 14567889999988 5666665543
No 181
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.55 E-value=9.2e-05 Score=77.95 Aligned_cols=173 Identities=13% Similarity=0.040 Sum_probs=96.6
Q ss_pred cCCccEEEcccccccccccCcccccccccccccccchhhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCC
Q 004021 494 WEGAKRISLMANEIESLSEIPTLLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLS 573 (779)
Q Consensus 494 ~~~lr~l~l~~~~~~~l~~~~~lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~ 573 (779)
+++++.|.+....... .+++.+ ....++..+..+++|+.|+|++|.-..+|. +. +++|++|++..|. +.
T Consensus 138 l~~L~~L~l~~~~~e~-------~~is~~-~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~-l~ 206 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEE-------QEISWI-EQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGG-LP 206 (362)
T ss_dssp HTTCSEEEECCCCTTT-------CCGGGC-BCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSB-CC
T ss_pred cchhhheeecCcchhh-------cccccc-cccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCC-CC
Confidence 4578888775432211 112222 233466667788999999999884234554 43 8899999998873 32
Q ss_pred CCchhhh--cCCccCcEeeecccc--CCCcccccCCccCCCch-hhHHhh--cCCCCCCceeEEeecccccccCCCCCcc
Q 004021 574 IIPHQLI--SGFLKLEVLRLLECG--SEGVTKEEGNVLCDDAE-PLMREL--LGLKRLNVLSWSFRSSLAVQKFFKYPKL 646 (779)
Q Consensus 574 ~lp~~~i--~~L~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~-~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~~L~~L 646 (779)
.-.-..+ ..+++|++|+++.+. ..+ +... .....+ ..+++|+.|++..+....... ..+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~----------~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~----~~l 272 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGF----------DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV----EMF 272 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTC----------CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH----HHH
T ss_pred hHHHHHHHHccCCCCcEEEEecccccccc----------chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH----HHH
Confidence 1111113 378999999986421 111 0000 011112 357899999998654321000 000
Q ss_pred cCcccccccCcceEEeccccccceecccccccCcccchhhccCCCCCCCCccEEEccCC
Q 004021 647 DLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSEHNFFTQLESLGILYG 705 (779)
Q Consensus 647 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (779)
.....+|+|++|+|+.|. ++..-. ..+. ..+..+++|+.|+|++|
T Consensus 273 --a~a~~~~~L~~LdLs~n~-L~d~G~-------~~L~----~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 273 --LESDILPQLETMDISAGV-LTDEGA-------RLLL----DHVDKIKHLKFINMKYN 317 (362)
T ss_dssp --HHCSSGGGCSEEECCSSC-CBHHHH-------HHHH----TTHHHHTTCSEEECCSB
T ss_pred --HhCccCCCCCEEECCCCC-CChHHH-------HHHH----hhcccCCcceEEECCCC
Confidence 001247899999998754 332100 0000 23356899999999875
No 182
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.53 E-value=0.00029 Score=76.39 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=93.8
Q ss_pred ccccchhhhH---HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHHhCCC
Q 004021 155 QTIVGQEKLL---PRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKRIGFS 231 (779)
Q Consensus 155 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~l~~~ 231 (779)
..++|.+..+ ..+...+..+ ..+.+.|+|.+|+||||||+.+++.. ...|. -++... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~---~l~a~~----------~- 86 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYA---NADVE---RISAVT----------S- 86 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHT---TCEEE---EEETTT----------C-
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHh---CCCeE---EEEecc----------C-
Confidence 4589998888 7777888777 55789999999999999999999876 23331 111100 0
Q ss_pred cchhhhhcchhhHHHHHHHh-hCCCcceeehhhcccc--------ccccCCCc-EEEE-EeCchh--hhhh-cC-CceeE
Q 004021 232 EDKKWKEKSLQDKAVDISSI-LSPKKFRIDLTELGVP--------LQMLNAGF-KIVL-KTRSAG--VCDQ-MD-SKNLE 296 (779)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~-L~~kr~~~~ld~l~~~--------~~~~~~gs-~Iiv-TTR~~~--va~~-~~-~~~~~ 296 (779)
...+........... ..+++..+.+|++... ++.-..|. .+|. ||.+.. +... .. ...+.
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~ 161 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYL 161 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEE
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEe
Confidence 000011111111111 1233444555554221 11111222 3333 555532 2111 12 45788
Q ss_pred ccCCChHHHHHHHHHHhhccCCC----CCCChHHHHHHHHHHhCCChhHHHHH
Q 004021 297 VYSLAHDEAWKLFQEMIERSTLD----SHTSIPELAETLARECGRLPLALKTV 345 (779)
Q Consensus 297 l~~L~~~~a~~Lf~~~a~~~~~~----~~~~l~~~~~~I~~~c~glPLai~~~ 345 (779)
+++++.++-..++.+.+...... ...--.+....|++.++|.+-.+..+
T Consensus 162 l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 162 LKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999887542100 01112567788889999988765543
No 183
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=2.4e-05 Score=74.19 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=32.3
Q ss_pred cchhhcccccCceeeecCCcccc-----cchhhccCccCcEeeccCCcCCCC-----CchhhhcCCccCcEeee--cccc
Q 004021 528 LPSRISSLVSLHHLDLSLTHIRG-----LPQELKALEKLRYLNLEYTHYLSI-----IPHQLISGFLKLEVLRL--LECG 595 (779)
Q Consensus 528 lp~~i~~L~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l--~~~~ 595 (779)
+...+...++|++|+|++|.|.. +...+...++|++|+|++| .++. +... +...++|++|++ .+|.
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEA-LQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHG-GGGCSSCCEEECCCCSSC
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHH-HHhCCCceEEEecCCCCC
Confidence 33344444555555555555432 3333444455555555555 2332 2222 444455555555 4444
Q ss_pred CC
Q 004021 596 SE 597 (779)
Q Consensus 596 ~~ 597 (779)
+.
T Consensus 135 i~ 136 (185)
T 1io0_A 135 LG 136 (185)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.51 E-value=0.0019 Score=66.20 Aligned_cols=169 Identities=14% Similarity=0.085 Sum_probs=91.0
Q ss_pred ccccchhhhHHHHHHHHhcc----------CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----------QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
..++|.+..++.+.+.+... ....+.+.|+|.+|+||||+|+++++.. ...| +.++...+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~---~~i~~~~l~--- 91 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATF---LNISAASLT--- 91 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEE---EEEESTTTS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEeeHHHHh---
Confidence 56899999999998887431 1134688999999999999999999876 2222 223321110
Q ss_pred HHHhCCCcchhhhhcchhhHHHHHHHh-hCCCcceeehhhccccc-------------------------cc--cCCCcE
Q 004021 225 GKRIGFSEDKKWKEKSLQDKAVDISSI-LSPKKFRIDLTELGVPL-------------------------QM--LNAGFK 276 (779)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~~~~ld~l~~~~-------------------------~~--~~~gs~ 276 (779)
.. ...........+... ...+...+.+|++.... +. .+.+..
T Consensus 92 -----~~-----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 92 -----SK-----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp -----SS-----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred -----hc-----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 00 000011111111111 11222233333331110 00 113345
Q ss_pred EEEEeCchhh-----hhhcCCceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChh-HHHHHH
Q 004021 277 IVLKTRSAGV-----CDQMDSKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPL-ALKTVG 346 (779)
Q Consensus 277 IivTTR~~~v-----a~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL-ai~~~g 346 (779)
||.||..... ...+ ...+.+...+.++-..++...+....... -.+....|++.+.|.+- ++..+.
T Consensus 162 vi~~tn~~~~l~~~l~~R~-~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRRF-TKRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEESCGGGBCHHHHHHC-CEEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCChhhCCHHHHhhC-CeEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6777775432 2222 35677777888888888887765433111 14567889999988775 554443
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.50 E-value=0.002 Score=64.57 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=36.8
Q ss_pred ccccchhhhHHHHHHHHh---ccC-------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---DQQ-------KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.+..++.+.+.+. ... ...+-|.|+|.+|+|||++|+++++..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999988877766543 211 234568899999999999999999876
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.49 E-value=0.00057 Score=70.53 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=37.3
Q ss_pred cccchhhhHHHHHHHHhcc-------------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITDQ-------------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|.+..++.+.+.+... ......+.|+|.+|+|||++|+.+++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999888888765421 2244578999999999999999998876
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.45 E-value=0.0021 Score=68.02 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=38.1
Q ss_pred ccccchhhhHHH---HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPR---VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..|+|++..++. +.+.+..+....+.+.|+|.+|+|||++|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999988766 455555553334689999999999999999999987
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.43 E-value=0.0039 Score=64.49 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=91.7
Q ss_pred ccccchhhhHHHHHHHHhc----------cCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITD----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
.+++|.++.++.|.+.+.- .....+-|.++|.+|+|||+||+++++.. . .. ..+.++...+..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 5689999998888887632 11234678999999999999999999875 1 11 122222221100
Q ss_pred HHHhCCCcchhhhhcchhhHHHHHHHhh-CCCcceeehhhcccccc-------------------------ccCCCcEEE
Q 004021 225 GKRIGFSEDKKWKEKSLQDKAVDISSIL-SPKKFRIDLTELGVPLQ-------------------------MLNAGFKIV 278 (779)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~~~~ld~l~~~~~-------------------------~~~~gs~Ii 278 (779)
. +.... +.....+.... ..++..+.+|++....+ ....+..||
T Consensus 85 ------~----~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 85 ------K----WLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp ------S----SCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred ------h----hhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 0 00000 11111111111 12222333333311100 012344566
Q ss_pred EEeCchhhh-hhc--C-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCC-hhHHHHHHH
Q 004021 279 LKTRSAGVC-DQM--D-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRL-PLALKTVGR 347 (779)
Q Consensus 279 vTTR~~~va-~~~--~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl-PLai~~~g~ 347 (779)
.||...... ..+ . ...+.++..+.++-.+++...+....... -......|++.+.|. +-.|..+..
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 677653221 111 2 46778888899999999988775432111 145678888998886 544555443
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.42 E-value=0.0026 Score=66.81 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=91.4
Q ss_pred ccccchhhhHHHHHHHHhcc----------CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----------QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
.+++|.+..++.|.+.+... ....+-|.|+|.+|+|||+||+++++.. ...| +.+....+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~---~~v~~~~l~~-- 122 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSSDLVS-- 122 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEE---EEEEHHHHHS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEeeHHHHhh--
Confidence 56899999999998877321 1123458899999999999999999987 2222 2233222211
Q ss_pred HHHhCCCcchhhhhcchhhHHHHHHHhh-CCCcceeehhhcccccc-------------------------ccCCCcEEE
Q 004021 225 GKRIGFSEDKKWKEKSLQDKAVDISSIL-SPKKFRIDLTELGVPLQ-------------------------MLNAGFKIV 278 (779)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~~~~ld~l~~~~~-------------------------~~~~gs~Ii 278 (779)
... ... +.....+.... ..+...+.+|++....+ ....+..||
T Consensus 123 --~~~--------g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI 191 (355)
T 2qp9_X 123 --KWM--------GES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 191 (355)
T ss_dssp --CC-----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred --hhc--------chH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 000 000 11111111111 12233333333221110 112345566
Q ss_pred EEeCchhh-----hhhcCCceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCC-ChhHHHHHH
Q 004021 279 LKTRSAGV-----CDQMDSKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGR-LPLALKTVG 346 (779)
Q Consensus 279 vTTR~~~v-----a~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~~g 346 (779)
.||..... ...+ ...+.+...+.++-.+++...+....... -......|++.+.| .+-.|..+.
T Consensus 192 ~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 192 GATNIPWQLDSAIRRRF-ERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEESCGGGSCHHHHHTC-CEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eecCCcccCCHHHHccc-CEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67765422 2211 46778888999999999988775433111 14556788899988 554555443
No 190
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.41 E-value=0.0052 Score=61.90 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=35.7
Q ss_pred ccccchhhhHHHHHHH-------Hhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRC-------ITDQ-QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~-------L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|....++++... +... ....+-+.|+|.+|+|||+||+++++..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4567887776666663 3221 3356788999999999999999999875
No 191
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.40 E-value=0.00053 Score=72.34 Aligned_cols=185 Identities=10% Similarity=0.099 Sum_probs=94.1
Q ss_pred ccccchhhhHHHHHHHH-hccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-C--CCCEEEEEEechHHHHHHH----
Q 004021 155 QTIVGQEKLLPRVWRCI-TDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-H--NFDVVIWAAVQTFQDDIGK---- 226 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~--~F~~~~wv~v~~i~~~i~~---- 226 (779)
..++|.+..++.+.+++ ..+ ..+.+.|+|..|+||||+|+.+++...... + .+++..|.........+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~--~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR--DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT--CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 45899999999998888 544 223389999999999999999988531100 1 1111101000000000000
Q ss_pred ---HhCCCcchhhhhcchhhHHHHHHHhh--------------CCCcceeehhhccc-----------cccccCCCcEEE
Q 004021 227 ---RIGFSEDKKWKEKSLQDKAVDISSIL--------------SPKKFRIDLTELGV-----------PLQMLNAGFKIV 278 (779)
Q Consensus 227 ---~l~~~~~~~~~~~~~~~~~~~l~~~L--------------~~kr~~~~ld~l~~-----------~~~~~~~gs~Ii 278 (779)
.+... . ............+.... .+++-.+.+|++.. .+.....+..+|
T Consensus 92 ~~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 92 YHLEITPS-D--MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp SEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred ceEEecHh-h--cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 00000 0 00000000111111111 11222344444322 111123467788
Q ss_pred EEeCch-hhhhhcC--CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHHHH
Q 004021 279 LKTRSA-GVCDQMD--SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKTVG 346 (779)
Q Consensus 279 vTTR~~-~va~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g 346 (779)
+||.+. .+..... ...+.+.+++.++..+.+.+.+...+...+. ++....|++.++|.+-.+..+.
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 887763 3322222 4678999999999999999887654322110 3567889999999887665443
No 192
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.38 E-value=0.0065 Score=63.23 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=89.1
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe------chHHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV------QTFQDDIG 225 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v------~~i~~~i~ 225 (779)
..++|.+..++.+...+..+ ......+.++|.+|+||||||+.+++.. ...|. ..+- .++ ..+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~~~l-~~~~ 97 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQGDM-AAIL 97 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSHHHH-HHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCHHHH-HHHH
Confidence 45789888777777666542 2345679999999999999999999876 22221 1111 111 1222
Q ss_pred HHhCCCc----chhhhhcchhhHHHHHHHhhCCCcceeeh------hhccccccccCCCcEE-EEEeCchhhhhhcC---
Q 004021 226 KRIGFSE----DKKWKEKSLQDKAVDISSILSPKKFRIDL------TELGVPLQMLNAGFKI-VLKTRSAGVCDQMD--- 291 (779)
Q Consensus 226 ~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~kr~~~~l------d~l~~~~~~~~~gs~I-ivTTR~~~va~~~~--- 291 (779)
..+.... ++ ..... ....+.+...+......+.. ..+...+ +...+ -.|++...+.....
T Consensus 98 ~~~~~~~v~~iDE-~~~l~-~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l----~~~~li~at~~~~~Ls~~l~sR~ 171 (334)
T 1in4_A 98 TSLERGDVLFIDE-IHRLN-KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI----QPFTLVGATTRSGLLSSPLRSRF 171 (334)
T ss_dssp HHCCTTCEEEEET-GGGCC-HHHHHHHHHHHHTSCCCC-------------------CCCEEEEEESCGGGSCHHHHTTC
T ss_pred HHccCCCEEEEcc-hhhcC-HHHHHHHHHHHHhcccceeeccCcccccccccC----CCeEEEEecCCcccCCHHHHHhc
Confidence 2221100 00 00000 01122222222211110000 0000000 11122 23555443322222
Q ss_pred CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 292 SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 292 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
...+.+++.+.++-.+++.+.+...... --.+.+..|+++++|.|-.+..
T Consensus 172 ~l~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 172 GIILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHHHH
T ss_pred CceeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHHHH
Confidence 2357899999999999999887543321 1256789999999999975543
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.37 E-value=0.0032 Score=64.53 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=39.1
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++.++++.+.+... -...+.|.|+|.+|+|||+||+++++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46899999988888876531 1245678999999999999999999876
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.34 E-value=0.00014 Score=68.74 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=40.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+.+++.+.+.+... ..+.+.|+|.+|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999775 45677899999999999999998876
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.33 E-value=0.0028 Score=65.78 Aligned_cols=47 Identities=17% Similarity=0.027 Sum_probs=39.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+.+++..+. ...++-+.|.+|+|||++|+++++..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 568999999999999998652 33677888889999999999998876
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.30 E-value=8e-05 Score=70.50 Aligned_cols=122 Identities=13% Similarity=0.007 Sum_probs=81.7
Q ss_pred cchhhcccccCceeeecCC-cccc-----cchhhccCccCcEeeccCCcCCCC-----CchhhhcCCccCcEeeeccccC
Q 004021 528 LPSRISSLVSLHHLDLSLT-HIRG-----LPQELKALEKLRYLNLEYTHYLSI-----IPHQLISGFLKLEVLRLLECGS 596 (779)
Q Consensus 528 lp~~i~~L~~L~~L~L~~~-~i~~-----lp~~~~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~ 596 (779)
+...+...++|++|+|++| .+.. +...+...++|++|+|++| .+.. +... +...++|++|++++|.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~-L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEM-LKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHH-HHHCSSCCEEECCSSCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHH-HHhCCCcCEEECcCCcC
Confidence 3445677899999999999 7754 5667788899999999999 4443 3333 56668899999999987
Q ss_pred CCcccccCCccCCCchhhHHhhcCCCCCCceeE--EeecccccccCCCCCcccCcccccccCcceEEecccc
Q 004021 597 EGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSW--SFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCT 666 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l--~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~ 666 (779)
.. .........+...++|++|++ +.|....-.. ..+ ...+...++|++|+|++|.
T Consensus 106 ~~----------~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~----~~l-~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SG----------SGILALVEALQSNTSLIELRIDNQSQPLGNNVE----MEI-ANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CH----------HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH----HHH-HHHHHHCSSCCEEECCCSS
T ss_pred CH----------HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH----HHH-HHHHHhCCCcCEEeccCCC
Confidence 63 101234566777788999998 5444321100 000 1123455788888888764
No 197
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.30 E-value=0.00023 Score=70.99 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=60.9
Q ss_pred CCccEEEcccccccccccCcccccccccccccccchhhcccccCceeeecCCcccccchhhccCc--cCcEeeccCCcCC
Q 004021 495 EGAKRISLMANEIESLSEIPTLLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRGLPQELKALE--KLRYLNLEYTHYL 572 (779)
Q Consensus 495 ~~lr~l~l~~~~~~~l~~~~~lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~~~~L~--~L~~L~l~~~~~l 572 (779)
..++.|+|++|.+..+ ..+|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|...
T Consensus 170 ~~L~~L~Ls~N~l~~l---------------~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRL---------------DDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp TTCCEEECTTSCCCCC---------------GGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCEEECCCCCCCCC---------------ccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 4678888887776443 33567788999999999999999987 3456565 9999999999644
Q ss_pred CCCch------hhhcCCccCcEeeec
Q 004021 573 SIIPH------QLISGFLKLEVLRLL 592 (779)
Q Consensus 573 ~~lp~------~~i~~L~~L~~L~l~ 592 (779)
..+|. .++..+++|+.|+-.
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cccCcchhHHHHHHHHCcccCeECCc
Confidence 44552 246778888888643
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.27 E-value=0.0051 Score=66.72 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=90.3
Q ss_pred ccccchhhhHHHHHHHHhc----------cCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 155 QTIVGQEKLLPRVWRCITD----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
.+++|.+..++.|.+.+.. .....+-|.++|++|+|||+||+++++.. . .. ..+.++...+....
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~---~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVSKW 208 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS---EEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC---CEEEEeHHHHHhhh
Confidence 5689999999999887731 11234678999999999999999999875 1 11 11222222222111
Q ss_pred HHHhCCCcchhhhhcchhhHHHHHHHhh-CCCcceeehhhcccc----------------------cc---ccCCCcEEE
Q 004021 225 GKRIGFSEDKKWKEKSLQDKAVDISSIL-SPKKFRIDLTELGVP----------------------LQ---MLNAGFKIV 278 (779)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~~~~ld~l~~~----------------------~~---~~~~gs~Ii 278 (779)
. +.. .... ..+.... ..+...+.+|++... +. ....+..||
T Consensus 209 ~---g~~------~~~~----~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 209 L---GES------EKLV----KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp ------C------CCTH----HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred c---chH------HHHH----HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 0 000 0001 1111111 122223333333211 00 012455677
Q ss_pred EEeCchhhh-hh-c-C-CceeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCC-ChhHHHHHH
Q 004021 279 LKTRSAGVC-DQ-M-D-SKNLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGR-LPLALKTVG 346 (779)
Q Consensus 279 vTTR~~~va-~~-~-~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~~g 346 (779)
.||...... .. . . ...+.++..+.++-..+|...+....... -......|++.+.| .+-.|..+.
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 777654321 11 1 1 35678888888888888888765432111 13556788899988 454555443
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.25 E-value=0.0047 Score=65.88 Aligned_cols=48 Identities=25% Similarity=0.240 Sum_probs=39.1
Q ss_pred ccccchhhhHHHHHHHHhcc----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.|.+++... ....+-|.|+|.+|+|||+||+++++..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56899999999999887321 1134678999999999999999998875
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0044 Score=65.04 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=37.9
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++++..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4578899888888776532 12234668899999999999999999987
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.005 Score=64.32 Aligned_cols=164 Identities=13% Similarity=0.182 Sum_probs=90.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEechHHHHHHHHhCCCcc
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFD-VVIWAAVQTFQDDIGKRIGFSED 233 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~-~~~wv~v~~i~~~i~~~l~~~~~ 233 (779)
..++|.+..++.+...+..+ ..+.+.++|.+|+||||+|+.+++.. . ...+. .+.-++. .
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l-~-~~~~~~~~~~~~~-------------~-- 85 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREI-Y-GKNYSNMVLELNA-------------S-- 85 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHH-H-TTSHHHHEEEECT-------------T--
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH-c-CCCccceEEEEcC-------------c--
Confidence 45789998889888888776 44348999999999999999999875 1 11111 0111111 0
Q ss_pred hhhhhcchhhHHHHHHHhh------CCCcceeehhhccc-----------cccccCCCcEEEEEeCch-hhhhhcC--Cc
Q 004021 234 KKWKEKSLQDKAVDISSIL------SPKKFRIDLTELGV-----------PLQMLNAGFKIVLKTRSA-GVCDQMD--SK 293 (779)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~L------~~kr~~~~ld~l~~-----------~~~~~~~gs~IivTTR~~-~va~~~~--~~ 293 (779)
.....+.....+.... .+.+-...+|++.. .+......+++|++|... .+..... ..
T Consensus 86 ---~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 86 ---DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp ---SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred ---ccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 0000111111111111 11112333343311 111122455677776543 2222221 35
Q ss_pred eeEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHH
Q 004021 294 NLEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALK 343 (779)
Q Consensus 294 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 343 (779)
.+.+.+++.++..+.+.+.+......-+ .+....|++.++|-+--+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 7889999999998888877643332111 4567889999999876433
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.05 E-value=0.0053 Score=67.09 Aligned_cols=48 Identities=31% Similarity=0.328 Sum_probs=38.9
Q ss_pred ccccchhhhHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-----------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..+++|.+.+... ....+-|.|+|.+|+|||++|+++++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 35899999999998887532 2345568899999999999999998865
No 203
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.99 E-value=0.00062 Score=61.37 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=36.8
Q ss_pred cccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 156 TIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|+...++++.+.+..-.....-|-|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999998886532233456799999999999999998865
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=0.015 Score=57.83 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=35.7
Q ss_pred ccccchhhhHHHHHHHHh---cc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---DQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.+..++++.+.+. .. ....+-|.|+|.+|+||||||+.+++..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 568999988877766542 21 0123458899999999999999999876
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0089 Score=63.72 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=38.6
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++++..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4678999999888876532 12345678899999999999999999987
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0047 Score=65.77 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=38.2
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++++..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3578999888888776531 12356778899999999999999999987
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0085 Score=63.95 Aligned_cols=48 Identities=29% Similarity=0.288 Sum_probs=38.3
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.++.+++|.+.+.- +-..++=|-++|++|.|||+||+++++..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4578899888888776642 12345678899999999999999999987
No 208
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0081 Score=63.31 Aligned_cols=48 Identities=31% Similarity=0.324 Sum_probs=38.1
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++++..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 4568899888888776532 12345678999999999999999999987
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.70 E-value=0.003 Score=60.46 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhccCCC--ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHH
Q 004021 162 KLLPRVWRCITDQQKN--RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGK 226 (779)
Q Consensus 162 ~~~~~l~~~L~~~~~~--~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~ 226 (779)
..++.+.+++...... .+.+.|+|.+|+|||+||+++++.. ......++|+++..+...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 99 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL---AKRNVSSLIVYVPELFRELKH 99 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH---HTTTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEhHHHHHHHHH
Confidence 3445555665543222 2688999999999999999999887 233345677777666655544
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0075 Score=64.24 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=38.6
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||+++++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999888876642 12345668899999999999999999987
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.68 E-value=0.026 Score=61.19 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=35.8
Q ss_pred ccccchhhhHHHHHHHHh---cc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---DQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++.++++.+.+. .. -...+-|.|+|.+|+|||+||+++++..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999988777766543 21 1123447899999999999999999876
No 212
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.57 E-value=0.013 Score=62.52 Aligned_cols=61 Identities=8% Similarity=0.112 Sum_probs=33.6
Q ss_pred hhcccccCceeeecCCcccccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccc
Q 004021 531 RISSLVSLHHLDLSLTHIRGLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLEC 594 (779)
Q Consensus 531 ~i~~L~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 594 (779)
.+.++..|+.+.+..+. ..+........+|+.+.+..+ +..++...+..+.+|+.+.+..+
T Consensus 203 ~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 203 CFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp TTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT
T ss_pred hhccccccceeecCCCc-eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC
Confidence 45666777777665542 222333334456666666543 34555544566666776666543
No 213
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.56 E-value=0.038 Score=57.33 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCCEEEEEEe-chHHHHHHHHhCC-----Ccc
Q 004021 161 EKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-HNFDVVIWAAV-QTFQDDIGKRIGF-----SED 233 (779)
Q Consensus 161 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~~F~~~~wv~v-~~i~~~i~~~l~~-----~~~ 233 (779)
++..+.+.+.+..+. -...+-++|..|+|||++|+.+++...... ..+.. +- -.....+...-.. ...
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~----c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS----CGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC----CSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCC----CCCCHHHHHHhcCCCCCEEEEecc
Confidence 455667777776552 345789999999999999999988752111 00000 00 0011111110000 000
Q ss_pred hhhhhcchhhHHHHHHHhhCC-----Ccceeehhhccc-----------cccccCCCcEEEEEeCch-hhhhhcC--Cce
Q 004021 234 KKWKEKSLQDKAVDISSILSP-----KKFRIDLTELGV-----------PLQMLNAGFKIVLKTRSA-GVCDQMD--SKN 294 (779)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~L~~-----kr~~~~ld~l~~-----------~~~~~~~gs~IivTTR~~-~va~~~~--~~~ 294 (779)
........++ ...+.+.+.. ++-...+|++.. .+.....++.+|++|.+. .+..... ...
T Consensus 83 ~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~ 161 (334)
T 1a5t_A 83 KGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRL 161 (334)
T ss_dssp TTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhccee
Confidence 0000111111 2223333322 122333333211 111122456667666654 3433332 568
Q ss_pred eEccCCChHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHhCCChhHHHH
Q 004021 295 LEVYSLAHDEAWKLFQEMIERSTLDSHTSIPELAETLARECGRLPLALKT 344 (779)
Q Consensus 295 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 344 (779)
+.+.+++.++..+.+.+.. . . -.+....+++.++|.|..+..
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~--~---~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV---T--M---SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC---C--C---CHHHHHHHHHHTTTCHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHhc---C--C---CHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999999888775 1 1 145668899999999976654
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.53 E-value=0.021 Score=65.71 Aligned_cols=48 Identities=31% Similarity=0.358 Sum_probs=37.6
Q ss_pred ccccchhhhHHHHHHHHh----cc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT----DQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.++.+++|.+.+. .. -..++=|-++|++|+|||+||+++++..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 356888888888877653 21 1245678999999999999999999987
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.38 E-value=0.0024 Score=69.81 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=39.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+.+++.+.+.|... ...-+.++|.+|+|||++|+.+++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999765 33456799999999999999999876
No 216
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.29 E-value=0.00095 Score=59.97 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=34.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.++|++..++++.+.+..-.....-|-|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357999999998888876421123447799999999999999997765
No 217
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.12 E-value=0.19 Score=53.32 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=43.7
Q ss_pred CCCCCCCCccEEEccCCCCCccccCC-CCCCCCccEEeeeCCCCCCCCCCCC-CC-cccccEEEechHhhhhhCc
Q 004021 689 SEHNFFTQLESLGILYGPDLKSIYPN-PLHFPKLKKIGVYGCPKLKKLPINS-SS-AKERRVVIEGLKEWWEELQ 760 (779)
Q Consensus 689 ~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~L~~lP~~~-~~-~~~~~l~i~~~~~~~~~l~ 760 (779)
..+.++++|+.+.|.. +++.+... +..+.+|+.+.|.. +++.++... .. .+++.+.+.+...-|+...
T Consensus 305 ~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~ 375 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWNAIS 375 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCB
T ss_pred eeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehhhhh
Confidence 4667788888888864 56777653 34678888888853 466676542 22 3457777777665555443
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.09 E-value=0.03 Score=65.29 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=38.9
Q ss_pred ccccchhhhHHHHHHHHhccC-------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQ-------KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+.+.+.... .....+.++|.+|+|||++|+++++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999888886421 122379999999999999999999876
No 219
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.89 E-value=0.0085 Score=57.17 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=35.0
Q ss_pred chhhhHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 159 GQEKLLPRVWRCITDQ-QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 159 Gr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|++.++++.+.+... .....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3566778888877653 2355799999999999999999998765
No 220
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.87 E-value=0.0062 Score=58.51 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=30.5
Q ss_pred hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 163 LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-+++|.+.+........+|+|+|..|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555554333356799999999999999999998876
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.84 E-value=0.0058 Score=61.25 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=35.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 347999999998888776522233567799999999999999999876
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.84 E-value=0.0048 Score=63.41 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=38.9
Q ss_pred ccccchhhhHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ------------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|++..++.+...+... .....-+.++|.+|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999998887641 1134567899999999999999999876
No 223
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.77 E-value=0.0063 Score=56.91 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHH
Q 004021 160 QEKLLPRVWRCITDQQ-KNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKR 227 (779)
Q Consensus 160 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~ 227 (779)
.+..++.+.+++..-. .....+.|+|.+|+||||||+.+++.. .....+ .++++++.++...+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~-~~~~~~~~~~~~~~~~~ 85 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI-YEKKGI-RGYFFDTKDLIFRLKHL 85 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH-HHHSCC-CCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH-HHHcCC-eEEEEEHHHHHHHHHHH
Confidence 4444555555554321 134789999999999999999999877 211222 24456665555555443
No 224
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.72 E-value=0.051 Score=63.47 Aligned_cols=48 Identities=29% Similarity=0.316 Sum_probs=38.8
Q ss_pred ccccchhhhHHHHHHHHhc-----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..+++|.+++.. .-....-|.|+|.+|+||||||+.+++..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4579999999998888753 11244679999999999999999998876
No 225
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.71 E-value=0.029 Score=59.79 Aligned_cols=147 Identities=14% Similarity=0.048 Sum_probs=86.3
Q ss_pred hcccccCceeeecCCcccccc-hhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCCC
Q 004021 532 ISSLVSLHHLDLSLTHIRGLP-QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCDD 610 (779)
Q Consensus 532 i~~L~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 610 (779)
.....+|+.+.+..+ ++.++ ..+..+.+|+.+.+..+ +..++...+..+.+|+.+......+..
T Consensus 226 ~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~------------ 290 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPE------------ 290 (394)
T ss_dssp TTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECT------------
T ss_pred hcccCCCceEEECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeecc------------
Confidence 334466777776543 33332 34667788888888765 345555557777777777665443221
Q ss_pred chhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccCC
Q 004021 611 AEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGSE 690 (779)
Q Consensus 611 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (779)
..+..+.+|+.+.+. .+++.+....+..+.+|+.++|.. .++.+.. ..
T Consensus 291 -----~~F~~~~~L~~i~l~----------~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~---------------~a 338 (394)
T 4fs7_A 291 -----KTFYGCSSLTEVKLL----------DSVKFIGEEAFESCTSLVSIDLPY--LVEEIGK---------------RS 338 (394)
T ss_dssp -----TTTTTCTTCCEEEEC----------TTCCEECTTTTTTCTTCCEECCCT--TCCEECT---------------TT
T ss_pred -----ccccccccccccccc----------cccceechhhhcCCCCCCEEEeCC--cccEEhH---------------Hh
Confidence 124456667766653 334444445566667777777643 2444433 45
Q ss_pred CCCCCCccEEEccCCCCCccccCC-CCCCCCccEEeee
Q 004021 691 HNFFTQLESLGILYGPDLKSIYPN-PLHFPKLKKIGVY 727 (779)
Q Consensus 691 ~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~ 727 (779)
+.++++|+.+.|.. +++.+... +..+++|+.+.+.
T Consensus 339 F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 339 FRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred ccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 66777777777753 36666543 3356677777764
No 226
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.68 E-value=0.0087 Score=61.25 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=38.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|+...+.++.+.+..-.....-|-|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999998886632234557799999999999999999865
No 227
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.63 E-value=0.012 Score=51.64 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=36.3
Q ss_pred eeeecCCccc--ccchhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCC
Q 004021 540 HLDLSLTHIR--GLPQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSE 597 (779)
Q Consensus 540 ~L~L~~~~i~--~lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 597 (779)
.++.++++++ .+|..+. .+|++|+|++| .++.+|.+.+..+.+|++|++.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 5566666666 6665432 35777777777 567777776677777777777776554
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.59 E-value=0.0083 Score=70.05 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=39.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+++++++.+.|... ...-+.++|.+|+|||++|+.+++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999765 33457899999999999999999875
No 229
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.55 E-value=0.18 Score=54.93 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=35.2
Q ss_pred ccccchhhhHHHHHHHHh---ccC-------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---DQQ-------KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++.+.++.+... ... .-.+=|.|+|.+|+||||||+++++..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 568999887777666542 210 112338999999999999999999876
No 230
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.55 E-value=0.0071 Score=71.54 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=39.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+++++++++.|... ...-+.++|.+|+||||+|+.+++..
T Consensus 170 d~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999765 34456899999999999999999876
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.55 E-value=0.012 Score=60.99 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=38.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.++|+++.++.+...+..+ .-+.++|.+|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHh
Confidence 55899999999998888765 357899999999999999998866
No 232
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.31 E-value=0.013 Score=68.44 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=39.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.+++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999866 44557899999999999999999876
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.25 E-value=0.0092 Score=59.86 Aligned_cols=48 Identities=27% Similarity=0.236 Sum_probs=36.5
Q ss_pred ccccchhhhHHHHHHHHhc----------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD----------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+.+.+.. +....+-+.|+|.+|+|||+||+++++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999888888776541 11122347799999999999999999876
No 234
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.24 E-value=0.014 Score=61.40 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=37.8
Q ss_pred ccccchhhhHHHHHHHHhc-------------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD-------------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+...+.. .......|.++|.+|+|||++|+++++..
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3479999999998888731 11134578899999999999999999876
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.23 E-value=0.011 Score=60.85 Aligned_cols=48 Identities=29% Similarity=0.436 Sum_probs=39.1
Q ss_pred ccccchhhhHHHHHHHHhcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 45789999999988888653 1123589999999999999999999876
No 236
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.22 E-value=0.019 Score=58.03 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 175 QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 175 ~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.....+|+|+|..|+||||||+.+....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3466799999999999999999988776
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.20 E-value=0.01 Score=55.20 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998876
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.14 E-value=0.011 Score=54.51 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 239
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.14 E-value=0.13 Score=52.21 Aligned_cols=133 Identities=17% Similarity=0.065 Sum_probs=72.3
Q ss_pred chhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCCEEEEEEec------hHHHHHHHHhCCC
Q 004021 159 GQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ-HNFDVVIWAAVQ------TFQDDIGKRIGFS 231 (779)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~~F~~~~wv~v~------~i~~~i~~~l~~~ 231 (779)
|-++.++.+.+.+..+ +.+..-++|.+|+||||+|+.+++...... .+.+. .++... +..+++.+.+...
T Consensus 1 g~~~~~~~L~~~i~~~--~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHHHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCC--CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHHHHHHHHHhhc
Confidence 4456677788887776 367899999999999999999987531011 23443 333321 0112222222111
Q ss_pred cchhhhhcchhhHHHHHHHhhCCCcceeehhhcc-----------ccccccCCCcEEEEEeCc-hhhhhhcCCceeEccC
Q 004021 232 EDKKWKEKSLQDKAVDISSILSPKKFRIDLTELG-----------VPLQMLNAGFKIVLKTRS-AGVCDQMDSKNLEVYS 299 (779)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~L~~kr~~~~ld~l~-----------~~~~~~~~gs~IivTTR~-~~va~~~~~~~~~l~~ 299 (779)
+. .+++-...+|++. ..+....+.+.+|++|.+ ..+...+..+.+++.+
T Consensus 78 p~-------------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~ 138 (305)
T 2gno_A 78 PE-------------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVV 138 (305)
T ss_dssp CS-------------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cc-------------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCC
Confidence 00 0111122222221 111122345666666644 3454444433899999
Q ss_pred CChHHHHHHHHHHh
Q 004021 300 LAHDEAWKLFQEMI 313 (779)
Q Consensus 300 L~~~~a~~Lf~~~a 313 (779)
+++++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999988776
No 240
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.11 E-value=0.014 Score=63.84 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=38.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.++|+++.++.+...+..+ .-|.++|.+|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 45899999999988888766 468899999999999999998866
No 241
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.07 E-value=0.02 Score=62.27 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=37.3
Q ss_pred ccccchhhhHHHHHHH---HhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRC---ITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~---L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.++.++.+..+ +..+....+-+.++|++|+|||++|+++++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5689999887765544 44443334578899999999999999999987
No 242
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.05 E-value=0.013 Score=55.70 Aligned_cols=25 Identities=40% Similarity=0.307 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|+|++|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 243
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.04 E-value=0.025 Score=58.22 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=33.9
Q ss_pred cchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 158 VGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 158 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|+.+.-.+++++.+... .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45566667777776532 3356679999999999999999998766
No 244
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.02 E-value=0.019 Score=50.23 Aligned_cols=51 Identities=31% Similarity=0.415 Sum_probs=39.0
Q ss_pred cccccccccc--ccchhhcccccCceeeecCCcccccchh-hccCccCcEeeccCCc
Q 004021 517 LSLRRNDSLT--ELPSRISSLVSLHHLDLSLTHIRGLPQE-LKALEKLRYLNLEYTH 570 (779)
Q Consensus 517 L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~l~~~~ 570 (779)
++.+++ .++ .+|..+. .+|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 13 v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 13 VDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555 666 6775442 4689999999999998775 6788999999999884
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.98 E-value=0.032 Score=57.02 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHhccCC-CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHH
Q 004021 160 QEKLLPRVWRCITDQQK-NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGK 226 (779)
Q Consensus 160 r~~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~ 226 (779)
+...++.+.+++..... ...-+.|+|.+|+|||+||+++++.. .. ..-..+.++++..+...+..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~-~~-~~g~~v~~~~~~~l~~~l~~ 198 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL-SE-KKGVSTTLLHFPSFAIDVKN 198 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH-HH-HSCCCEEEEEHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH-HH-hcCCcEEEEEHHHHHHHHHH
Confidence 34445555566655321 24678899999999999999999987 20 12234556666666555543
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.96 E-value=0.012 Score=54.42 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 004021 179 GIIGLYGIGGVGKTTLLKQV 198 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v 198 (779)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 247
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.93 E-value=0.025 Score=55.67 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=31.2
Q ss_pred chhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 159 GQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+....+.++............+|.|.|++|+||||+|+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344445554444433356789999999999999999998765
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.90 E-value=0.015 Score=54.78 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|+|++|+|||||++.+....
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999997753
No 249
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.87 E-value=0.06 Score=59.83 Aligned_cols=48 Identities=29% Similarity=0.412 Sum_probs=36.9
Q ss_pred ccccchhhhHHHHHHHHhc----cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD----QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.++..+.+.+.+.- .......+.++|.+|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578888877777665432 12245689999999999999999999876
No 250
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.86 E-value=0.055 Score=57.60 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=31.1
Q ss_pred hcccccCceeeecCCccccc-chhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeec
Q 004021 532 ISSLVSLHHLDLSLTHIRGL-PQELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLL 592 (779)
Q Consensus 532 i~~L~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 592 (779)
|.++.+|+.+.+..+. ..+ ...+.++.+|+.+.+... +..++...|.++.+|+.+.+.
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeC
Confidence 4455556666554432 222 223555666666666432 455665556666666666654
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.84 E-value=0.016 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 252
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.80 E-value=0.024 Score=56.90 Aligned_cols=48 Identities=27% Similarity=0.193 Sum_probs=34.1
Q ss_pred ccccchhhhHHHHHHHHhcc----------C-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ----------Q-KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~-~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|.++.+++|.+.+... . .-.+=+.++|.+|+||||||+.++...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 45788888888887754210 0 111229999999999999999999876
No 253
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.79 E-value=0.18 Score=53.14 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=14.9
Q ss_pred ccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeec
Q 004021 556 KALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLL 592 (779)
Q Consensus 556 ~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 592 (779)
....+|+.+.+..+ +..++...+..+.+|+.+.+.
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp 248 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIP 248 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEEC
T ss_pred ccccccceeeeccc--eeEEccccccCCccceEEEcC
Confidence 33444444444332 333333334444445544443
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.78 E-value=0.016 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.|.|+|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998876
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.70 E-value=0.015 Score=53.83 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 256
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.64 E-value=0.02 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998866
No 257
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.64 E-value=0.021 Score=54.32 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|+.|+||||+|+.+....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998876
No 258
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.54 E-value=0.035 Score=53.85 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 162 KLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+..+.+.+.+... ...+|+|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344444444433 57899999999999999999998765
No 259
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.53 E-value=0.33 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.|+|.||+||||+|..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998877
No 260
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.53 E-value=0.019 Score=54.64 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.52 E-value=0.019 Score=53.47 Aligned_cols=25 Identities=44% Similarity=0.391 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|.|.|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998776
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.51 E-value=0.02 Score=53.91 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999877
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.51 E-value=0.022 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|+.|+|||||++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998765
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.51 E-value=0.034 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 265
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.51 E-value=0.021 Score=53.61 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|.|++|+||||+|+.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 266
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.48 E-value=0.021 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.46 E-value=0.028 Score=55.77 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=33.6
Q ss_pred ccccchhhhHHHHHHHHh---cc------C-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCIT---DQ------Q-KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~------~-~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++.+.++.+... .. . .-.+=+.|+|.+|+||||||+.+++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 467898877666655432 11 0 011238999999999999999999876
No 268
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.44 E-value=0.014 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....+.|+|..|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999877
No 269
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.44 E-value=0.031 Score=59.11 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=36.6
Q ss_pred ccccchhhhHHHHHHHHhc----------------------------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD----------------------------QQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.|...+.. .......+.++|.+|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578998888888877621 01123468899999999999999999876
No 270
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.41 E-value=0.16 Score=53.61 Aligned_cols=136 Identities=11% Similarity=0.078 Sum_probs=81.5
Q ss_pred hhcccccCceeeecCCcccccc-hhhccCccCcEeeccCCcCCCCCchhhhcCCccCcEeeeccccCCCcccccCCccCC
Q 004021 531 RISSLVSLHHLDLSLTHIRGLP-QELKALEKLRYLNLEYTHYLSIIPHQLISGFLKLEVLRLLECGSEGVTKEEGNVLCD 609 (779)
Q Consensus 531 ~i~~L~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 609 (779)
.+....+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ ++.++...+.++.+|+.+.+..+ +..
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~----------- 276 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKT----------- 276 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSE-----------
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-cee-----------
Confidence 4455667777766544 33433 34667788888888765 56777666777888888877543 111
Q ss_pred CchhhHHhhcCCCCCCceeEEeecccccccCCCCCcccCcccccccCcceEEeccccccceecccccccCcccchhhccC
Q 004021 610 DAEPLMRELLGLKRLNVLSWSFRSSLAVQKFFKYPKLDLTWLVFVQNLKELEIIVCTEMEEIICVDKLRDVSDISEIIGS 689 (779)
Q Consensus 610 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (779)
.....+..+++|+.+.+. -+.++.+....+.++.+|+.+.|.. .++.+.. .
T Consensus 277 ---i~~~aF~~c~~L~~i~l~---------~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~---------------~ 327 (379)
T 4h09_A 277 ---VPYLLCSGCSNLTKVVMD---------NSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQV---------------Y 327 (379)
T ss_dssp ---ECTTTTTTCTTCCEEEEC---------CTTCCEECTTTTTTCTTCCEEECCT--TCCEECT---------------T
T ss_pred ---cccccccccccccccccc---------ccccceehhhhhcCCCCCCEEEcCc--cccEEHH---------------H
Confidence 122335566777777664 2234444445566677777777753 2455543 4
Q ss_pred CCCCCCCccEEEccCCCCCcccc
Q 004021 690 EHNFFTQLESLGILYGPDLKSIY 712 (779)
Q Consensus 690 ~~~~~~~L~~L~l~~~~~l~~l~ 712 (779)
.+.++++|+.+.+.. +++.+.
T Consensus 328 aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 328 AFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TTTTCTTCCCCCCCT--TCCEEC
T ss_pred HhhCCCCCCEEEECC--ccCEEc
Confidence 666777777777643 355553
No 271
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.41 E-value=0.022 Score=58.30 Aligned_cols=26 Identities=31% Similarity=0.692 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.+||+|.|-|||||||.|..++...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHHHH
Confidence 56899999999999999998887766
No 272
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.40 E-value=0.027 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|+.|+||||+|+.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998764
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.39 E-value=0.023 Score=53.48 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHHHHH
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDIGKR 227 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i~~~ 227 (779)
.+|.|.|++|+||||+|+.+.... .. ...+ ..+++..++...++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l-~~-~g~~-~~~i~~~~~~r~~~~~ 49 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL-RK-EGVN-YKMVSFGSVMFEVAKE 49 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-HT-TTCC-CEEEEHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-Hh-cCcc-eEEEehHHHHHHHHhc
Confidence 589999999999999999999876 21 1111 2344555555555543
No 274
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.32 E-value=0.044 Score=55.18 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=34.3
Q ss_pred ccccchhhhHHHHHHHHhc---c------C-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITD---Q------Q-KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~------~-~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|.++.++++.+.... . . .-.+=+.|+|.+|+||||||+.+++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 5688988777666654421 1 0 011228999999999999999999876
No 275
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.31 E-value=0.025 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.30 E-value=0.024 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 277
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.30 E-value=0.036 Score=53.50 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=31.9
Q ss_pred chhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 159 GQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.++..+.+.+.+... ..++|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555555555444 67899999999999999999988765
No 278
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.30 E-value=0.021 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998876
No 279
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.28 E-value=0.027 Score=52.69 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
....|.|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 280
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.23 E-value=0.044 Score=56.00 Aligned_cols=45 Identities=24% Similarity=0.232 Sum_probs=33.0
Q ss_pred cchhhhHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 158 VGQEKLLPRVWRCITDQ--QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 158 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|-...+..+...+... .....+|+|.|..|+||||||+.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55555555555555443 3456699999999999999999998765
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.23 E-value=0.027 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|.|++|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998866
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.21 E-value=0.025 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 283
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.21 E-value=0.03 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 284
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.21 E-value=0.027 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 285
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.18 E-value=0.029 Score=53.73 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998765
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.15 E-value=0.03 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
...+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5679999999999999999998763
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.14 E-value=0.023 Score=54.20 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998765
No 288
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.13 E-value=0.032 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.+.++|++|+|||+||+++++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688899999999999999999987
No 289
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.10 E-value=0.022 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998876
No 290
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.08 E-value=0.08 Score=54.92 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=53.0
Q ss_pred HHHHHHh-ccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEec-hHHHHHHHHhCCCcchh--hhhcch
Q 004021 166 RVWRCIT-DQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQ-TFQDDIGKRIGFSEDKK--WKEKSL 241 (779)
Q Consensus 166 ~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~-~i~~~i~~~l~~~~~~~--~~~~~~ 241 (779)
.|-..|. .+=..-.++.|.|.+|+||||||.+++... . ..=..++|++.. ......++.++...... ....+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~-~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~ 124 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEA-Q--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCH
Confidence 3444454 221234799999999999999999998876 2 111346788872 12222556666542110 112334
Q ss_pred hhHHHHHHHhhCCCcc-eeehhhccc
Q 004021 242 QDKAVDISSILSPKKF-RIDLTELGV 266 (779)
Q Consensus 242 ~~~~~~l~~~L~~kr~-~~~ld~l~~ 266 (779)
++....+...++..+. .+++|.+..
T Consensus 125 e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 125 EQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 4444444444432222 444555443
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.07 E-value=0.029 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.07 E-value=0.031 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998754
No 293
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.04 E-value=0.036 Score=54.94 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 163 LLPRVWRCITDQ---QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 163 ~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+++...+..+ .....+|.|+|++|+||||+|+.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334444444432 2345789999999999999999998876
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.01 E-value=0.033 Score=53.15 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 295
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.99 E-value=0.032 Score=53.33 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|..|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999987654
No 296
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.99 E-value=0.036 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.|.|++|+||||.|+.++..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998876
No 297
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.98 E-value=0.19 Score=50.71 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=50.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-chHHHHHHHHhCCCcchhh--hhcchhhH-HHHHHHh--hC
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QTFQDDIGKRIGFSEDKKW--KEKSLQDK-AVDISSI--LS 253 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~i~~~i~~~l~~~~~~~~--~~~~~~~~-~~~l~~~--L~ 253 (779)
++-|.|.+|+||||||.+++... .....=..++||+. ..+....+++++.+.+.-. ...+.++. ...+... ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 78999999999999999887766 21111246889988 2233345777776522111 12334444 3222222 34
Q ss_pred CCcc-eeehhhccccc
Q 004021 254 PKKF-RIDLTELGVPL 268 (779)
Q Consensus 254 ~kr~-~~~ld~l~~~~ 268 (779)
..++ ++++|.+...+
T Consensus 109 ~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCCEEEEEECSTTCB
T ss_pred ccCceEEEEecccccc
Confidence 3333 66777765554
No 298
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.92 E-value=0.042 Score=58.64 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=37.8
Q ss_pred ccccchhhhHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ------------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.++.++.+...+... ....+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999888887776331 1124568899999999999999999876
No 299
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.92 E-value=0.037 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998876
No 300
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.92 E-value=0.035 Score=51.91 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|.|++|+||||+|+.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 301
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.91 E-value=0.033 Score=55.42 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.90 E-value=0.03 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999977
No 303
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.89 E-value=0.028 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 304
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.88 E-value=0.036 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999877
No 305
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.88 E-value=0.032 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 306
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.88 E-value=0.034 Score=53.35 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44699999999999999999998865
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.85 E-value=0.037 Score=50.66 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998876
No 308
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.85 E-value=0.032 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 309
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.74 E-value=0.1 Score=54.57 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=31.1
Q ss_pred hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 163 LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...++.+.+....+...+|+|+|.+|+|||||+..+....
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455566665444577899999999999999999988765
No 310
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.74 E-value=0.036 Score=51.47 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|+|..|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998776
No 311
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.74 E-value=0.037 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|+|+.|+|||||++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999998765
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.73 E-value=0.038 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|.|.|++|+||||+|+.++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 313
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.72 E-value=0.043 Score=51.59 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|++|+||||+|+.+....
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 314
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.71 E-value=0.038 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.65 E-value=0.026 Score=52.67 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998765
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.65 E-value=0.032 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
..+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999998553
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.65 E-value=0.031 Score=52.43 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 318
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.64 E-value=0.038 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 319
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.62 E-value=0.041 Score=54.45 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 320
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.62 E-value=0.18 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998777
No 321
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.60 E-value=0.17 Score=53.90 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 322
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.59 E-value=0.032 Score=58.27 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=34.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+...+... ...-|-|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhC
Confidence 45899988666654444432 22338899999999999999999876
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.52 E-value=0.042 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 324
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.50 E-value=0.045 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 325
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.48 E-value=0.043 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998764
No 326
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.46 E-value=0.16 Score=51.49 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..+|+++|.+|+||||++..++... ... -..+.++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~~--g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KKK--GFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HHT--TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHC--CCeEEEEec
Confidence 5799999999999999999998776 222 123555555
No 327
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.43 E-value=0.045 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.39 E-value=0.038 Score=51.58 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.|.|+|+.|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998765
No 329
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.37 E-value=0.042 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 330
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.34 E-value=0.14 Score=53.12 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEech-HHHHHHHHhCCCcchh--hhhcchhhHHHHHHHhhC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQT-FQDDIGKRIGFSEDKK--WKEKSLQDKAVDISSILS 253 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~-i~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~L~ 253 (779)
.-+++.|.|.+|+||||||.+++.... ..=..++|++... .-...++.++.....- ....+.++....+....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 447999999999999999999987652 1224578888821 1122355555431110 012233444444444444
Q ss_pred CCcc-eeehhhcccc
Q 004021 254 PKKF-RIDLTELGVP 267 (779)
Q Consensus 254 ~kr~-~~~ld~l~~~ 267 (779)
..++ ++++|.+...
T Consensus 137 ~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 137 SGALDIIVIDSVAAL 151 (349)
T ss_dssp TTCCSEEEEECGGGC
T ss_pred cCCCCEEEEcChHhh
Confidence 3333 5555655433
No 331
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.34 E-value=0.038 Score=52.46 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 332
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.34 E-value=0.049 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 333
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.31 E-value=0.05 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|..|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 56799999999999999999998866
No 334
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.27 E-value=0.17 Score=52.03 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccc---CCCCEEEEEEec-----hHHHHHHHHhCCC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQ---HNFDVVIWAAVQ-----TFQDDIGKRIGFS 231 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~---~~F~~~~wv~v~-----~i~~~i~~~l~~~ 231 (779)
...++.|+|.+|+||||||..++....... ..-..++|++.. .-+..+++.++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~ 168 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLD 168 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 346999999999999999999887641110 002478899882 2233455555543
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.25 E-value=0.074 Score=54.64 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+++|+|..|+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998776
No 336
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.21 E-value=0.053 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|+.|+||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998765
No 337
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.20 E-value=0.049 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 338
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.20 E-value=0.23 Score=51.52 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEech-----HHHHHHHHhCCC
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQH----NFDVVIWAAVQT-----FQDDIGKRIGFS 231 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~----~F~~~~wv~v~~-----i~~~i~~~l~~~ 231 (779)
|-..|..+=....++.|+|.+|+||||||..++... .... .-..++|++... -+..++..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~ 183 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD 183 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 333443332245799999999999999999988764 1111 234788998822 233455555543
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.16 E-value=0.045 Score=52.96 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|.|.|++|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998876
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.13 E-value=0.057 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998765
No 341
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.13 E-value=0.057 Score=53.18 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34799999999999999999998754
No 342
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.09 E-value=0.056 Score=54.97 Aligned_cols=26 Identities=27% Similarity=0.578 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|.+|+|||||++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998776
No 343
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.09 E-value=0.098 Score=59.06 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=38.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45799998888888777766 588999999999999999999876
No 344
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.03 E-value=0.065 Score=48.59 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44799999999999999999998764
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.02 E-value=0.055 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.01 E-value=0.053 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 347
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.00 E-value=0.062 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|.|+.|+||||+|+.+....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998876
No 348
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.99 E-value=0.18 Score=52.68 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEech-HHHHHHHHhCCCcchh--hhhcchhhHHHHHHHhhC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQT-FQDDIGKRIGFSEDKK--WKEKSLQDKAVDISSILS 253 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~-i~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~L~ 253 (779)
...++.|.|.+|+||||||.+++.... ..-..++|++... .-...+..++.+...- ....+.++....+....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 346899999999999999999887652 1223688998821 1112345555431110 012334555555555554
Q ss_pred CCcc-eeehhhcccc
Q 004021 254 PKKF-RIDLTELGVP 267 (779)
Q Consensus 254 ~kr~-~~~ld~l~~~ 267 (779)
...+ ++++|.+...
T Consensus 150 ~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 150 SGAIDVVVVDSVAAL 164 (366)
T ss_dssp TTCCSEEEEECTTTC
T ss_pred cCCCCEEEEeChHHh
Confidence 4444 5556665443
No 349
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.99 E-value=0.11 Score=53.24 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 350
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.94 E-value=0.06 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999998765
No 351
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.93 E-value=0.031 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.706 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|+|.|..|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 352
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.89 E-value=0.27 Score=45.88 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe-ch----HHHHHHHHhCC---------Ccch---hhhhcch
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV-QT----FQDDIGKRIGF---------SEDK---KWKEKSL 241 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v-~~----i~~~i~~~l~~---------~~~~---~~~~~~~ 241 (779)
..|-|++-.|.||||.|-..+-+.. ...+ .+.++.. +. =-..+++.+.. .... .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 4666777777999999988877662 2223 3444433 11 11234444420 0000 0011122
Q ss_pred hhHHHHHHHhhCCCcc-eeehhhcccc--------------ccccCCCcEEEEEeCch
Q 004021 242 QDKAVDISSILSPKKF-RIDLTELGVP--------------LQMLNAGFKIVLKTRSA 284 (779)
Q Consensus 242 ~~~~~~l~~~L~~kr~-~~~ld~l~~~--------------~~~~~~gs~IivTTR~~ 284 (779)
.......++.+.+.+| ++++|++... +........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 3445567777877888 6667776322 22334677899999984
No 353
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.88 E-value=0.12 Score=50.43 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQH----NFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~----~F~~~~wv~v 217 (779)
.-.++.|+|.+|+|||||+..++... .... .-..++|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEEC
Confidence 34699999999999999999998753 1111 2357888876
No 354
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.88 E-value=0.065 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|+.|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998865
No 355
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.86 E-value=0.089 Score=49.40 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 164 LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+..+..++.+- +....+.|+|++|+||||+|.++++..
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 45555555432 233579999999999999999998876
No 356
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.78 E-value=0.064 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVN 199 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~ 199 (779)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 357
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.76 E-value=0.054 Score=52.22 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+++|+|..|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 358
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.75 E-value=0.07 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 359
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.69 E-value=0.069 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998776
No 360
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.66 E-value=0.055 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|+|+|+.|+||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999876
No 361
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.51 E-value=0.081 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
.+++|+|..|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 362
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.49 E-value=0.075 Score=51.18 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34799999999999999999998765
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.45 E-value=0.13 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 364
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.40 E-value=0.074 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998876
No 365
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.38 E-value=0.12 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
. .+++|+|..|+|||||.+.++.-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 5 799999999999999999998765
No 366
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.38 E-value=0.1 Score=50.05 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
...++.|+|.+|+||||||..++. . . -..++|++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEEC
Confidence 446999999999999999999987 3 1 135677765
No 367
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.36 E-value=0.072 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..|.|.|++|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998876
No 368
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.35 E-value=0.077 Score=51.45 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 369
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.32 E-value=0.077 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998876
No 370
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.30 E-value=0.086 Score=51.40 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...|.|.|+.|+||||+|+.++...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 371
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.27 E-value=0.081 Score=50.38 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEechHHHHH
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVQTFQDDI 224 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v~~i~~~i 224 (779)
+|.|.|++|+||||.|+.++.++ . ...++..+++++-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g---~~~istGdllR~~ 38 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----G---FVHISTGDILREA 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----C---CEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----C---CeEEcHHHHHHHH
Confidence 57899999999999999998876 1 2345555555543
No 372
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.27 E-value=0.066 Score=50.22 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.27 E-value=0.078 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 374
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.24 E-value=0.45 Score=48.83 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe----chHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV----QTFQDDIGK 226 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v----~~i~~~i~~ 226 (779)
.-.++.|.|.+|+||||||..++..... .=..++|++. .++...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHHHH
Confidence 3468999999999999999999887622 2246788888 444444443
No 375
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.22 E-value=0.26 Score=50.36 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe----chHHHHHHH
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV----QTFQDDIGK 226 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v----~~i~~~i~~ 226 (779)
.-.++.|.|.+|+||||||..++... ..+. ..++|++. .++...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLEMGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESSSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECCCCHHHHHHHHHH
Confidence 44799999999999999999998766 2222 67889988 344444443
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.21 E-value=0.084 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+++|+|..|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998876
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.21 E-value=0.078 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 378
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.17 E-value=0.089 Score=51.00 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998743
No 379
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.14 E-value=0.88 Score=49.00 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
...++.|.|.+|+||||||..++.... . ..=..++|++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a-~-~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA-L-KEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H-TTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H-hCCCeEEEEEC
Confidence 446999999999999999999988762 1 11235788887
No 380
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.12 E-value=0.16 Score=53.26 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 165 PRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 165 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+.+-+.-+-....+++|+|++|+|||||++.++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33444443332355799999999999999999998754
No 381
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.06 E-value=0.099 Score=48.21 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++++|+|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998765
No 382
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.03 E-value=0.094 Score=53.29 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|.+|+||||++..++...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 383
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.02 E-value=0.089 Score=53.77 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..++|+|+|-||+||||+|..++....+ . .. .++-|..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~-~-G~-~VlliD~ 77 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSI-L-GK-RVLQIGC 77 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-T-TC-CEEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHH-C-CC-eEEEEeC
Confidence 5689999999999999999998887732 2 22 3555555
No 384
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.01 E-value=0.12 Score=50.32 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34699999999999999999997654
No 385
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.98 E-value=0.053 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++++|+|..|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998776
No 386
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.93 E-value=0.083 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNN 200 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~ 200 (779)
.-.+++|+|..|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999999884
No 387
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.93 E-value=1 Score=53.09 Aligned_cols=48 Identities=29% Similarity=0.436 Sum_probs=38.5
Q ss_pred ccccchhhhHHHHHHHHhcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+...+... ......+.|+|.+|+|||++|+.+++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999888887542 1123578999999999999999998876
No 388
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.87 E-value=0.1 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34699999999999999999998765
No 389
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.86 E-value=0.091 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|.|+|+.|+||||||+.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998876
No 390
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.79 E-value=0.15 Score=50.03 Aligned_cols=37 Identities=30% Similarity=0.233 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
-.++.|.|.+|+||||||..++..... .=..++|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~ 59 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVAL 59 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEc
Confidence 468999999999999999888765521 1235777776
No 391
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.71 E-value=0.11 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999998766
No 392
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.66 E-value=0.12 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999997654
No 393
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.64 E-value=0.066 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-hhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVN-NNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~-~~~ 202 (779)
..+++|+|..|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 544
No 394
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.62 E-value=0.12 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999997754
No 395
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.59 E-value=0.11 Score=52.24 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 396
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.58 E-value=0.12 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 55689999999999999999998765
No 397
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.56 E-value=0.14 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999997754
No 398
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.47 E-value=0.11 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
.+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 357789999999999999999875
No 399
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.41 E-value=0.11 Score=53.83 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998876
No 400
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.38 E-value=0.11 Score=55.68 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999987765
No 401
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.31 E-value=0.16 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34699999999999999999997754
No 402
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.26 E-value=0.14 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999998765
No 403
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.26 E-value=0.11 Score=50.04 Aligned_cols=104 Identities=16% Similarity=0.041 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe---chHHHHHHHHhCCCcchhhhhcchhhHHHHHHHhhC
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV---QTFQDDIGKRIGFSEDKKWKEKSLQDKAVDISSILS 253 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v---~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 253 (779)
.-.++.|+|..|+||||++..+.++. .. .... ++.+.. .+-...++..++.. .+........+....+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~-~g~k-Vli~~~~~d~r~~~~i~srlG~~-~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EY-ADVK-YLVFKPKIDTRSIRNIQSRTGTS-LPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HH-TTCC-EEEEEECCCGGGCSSCCCCCCCS-SCCEEESSTHHHHHHHHSTTS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hh-cCCE-EEEEEeccCchHHHHHHHhcCCC-ccccccCCHHHHHHHHHHHhh
Confidence 34789999999999999999888877 22 2223 333433 11112344444432 111112233444555555555
Q ss_pred CCcc-eeehhhcccc-------cc-ccCCCcEEEEEeCch
Q 004021 254 PKKF-RIDLTELGVP-------LQ-MLNAGFKIVLKTRSA 284 (779)
Q Consensus 254 ~kr~-~~~ld~l~~~-------~~-~~~~gs~IivTTR~~ 284 (779)
+.++ .+.+|++... +. -...|-.||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccc
Confidence 5555 4455554211 00 012467788887743
No 404
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.18 E-value=0.066 Score=54.12 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 405
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.17 E-value=0.37 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
.-.++.|.|.+|+||||||..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999998865
No 406
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.16 E-value=0.15 Score=49.85 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997754
No 407
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.14 E-value=0.15 Score=50.06 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999997765
No 408
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.14 E-value=0.12 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 409
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.08 E-value=0.13 Score=49.17 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999997754
No 410
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.08 E-value=0.16 Score=49.30 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|.|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998765
No 411
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.05 E-value=0.17 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999998765
No 412
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.05 E-value=0.19 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.|.+.|.||+||||+|..++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47788999999999999998876
No 413
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.04 E-value=0.11 Score=50.61 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999997754
No 414
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.97 E-value=0.18 Score=49.80 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999997754
No 415
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.94 E-value=0.12 Score=48.36 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988754
No 416
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.93 E-value=0.16 Score=50.23 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3699999999999999999997755
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.91 E-value=0.16 Score=49.37 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999987
No 418
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.88 E-value=1.1 Score=48.28 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
...++.|.|.+|+||||||..++.... .. .=..++|++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~-~~-~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA-TK-TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH-HH-SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-Hh-CCCcEEEEEC
Confidence 346999999999999999999988762 11 1125777777
No 419
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.87 E-value=0.16 Score=59.27 Aligned_cols=48 Identities=27% Similarity=0.357 Sum_probs=38.4
Q ss_pred ccccchhhhHHHHHHHHhcc-------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 155 QTIVGQEKLLPRVWRCITDQ-------QKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 56799999998888877532 1233478999999999999999998876
No 420
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.87 E-value=0.22 Score=46.58 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999987654
No 421
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.83 E-value=0.069 Score=59.91 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=35.6
Q ss_pred cccccchhhhHHHHHHHHhccCC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 154 EQTIVGQEKLLPRVWRCITDQQK---------NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~---------~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.++|.+..+..+.-.+..+.. .-.-|-++|.+|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 36789999877776655554410 00147899999999999999998765
No 422
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.82 E-value=0.13 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
-.+++|+|..|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 423
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.82 E-value=0.42 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|+|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998877
No 424
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.79 E-value=0.15 Score=54.99 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998776
No 425
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.73 E-value=0.13 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|.|.+|+|||||++.++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998665
No 426
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.65 E-value=0.16 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+-|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987653
No 427
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.62 E-value=0.2 Score=49.84 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34699999999999999999997654
No 428
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.61 E-value=0.27 Score=48.40 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 166 RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
-+..++....+...-|.++|++|.|||.+|.++++.
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 355555543234457999999999999999999985
No 429
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.60 E-value=0.15 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
.-.+++|+|..|+|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999875
No 430
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.58 E-value=0.15 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+++|+|.+|+||||++..++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998876
No 431
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.57 E-value=0.19 Score=52.29 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
..+++.|.|.+|+||||||.+++.... ..-..++|++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeC
Confidence 446999999999999999999887652 12235788887
No 432
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.57 E-value=0.15 Score=54.13 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=26.9
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 166 RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
++.+.|........+++|+|..|+|||||.+.+...
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 344444433234579999999999999999999874
No 433
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.54 E-value=0.14 Score=46.54 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998764
No 434
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.52 E-value=0.12 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4699999999999999999998754
No 435
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.50 E-value=0.14 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999998754
No 436
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.49 E-value=0.16 Score=51.44 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45799999999999999999998754
No 437
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.44 E-value=0.23 Score=49.51 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEe
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAV 217 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~~F~~~~wv~v 217 (779)
++|+|.|-||+||||+|..++.... . ... .++-|..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~-~G~-~VlliD~ 37 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-A-MGK-TIMVVGC 37 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-T-TTC-CEEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-H-CCC-cEEEEcC
Confidence 5788899999999999999988772 1 222 3555555
No 438
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.39 E-value=0.19 Score=50.31 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998755
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.35 E-value=0.16 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...|+|.|..|+||||+++.++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998876
No 440
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.33 E-value=0.24 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++|+|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 441
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.27 E-value=0.16 Score=47.87 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...|+|+|.+|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998753
No 442
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.25 E-value=0.18 Score=49.90 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||++.+....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44799999999999999999988765
No 443
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.25 E-value=0.15 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999998765
No 444
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.14 E-value=0.12 Score=47.99 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.12 E-value=0.15 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.++.|+|.+|+||||||..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999988754
No 446
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.09 E-value=0.16 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-+.|.|.|..|+||||||.++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998765
No 447
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.04 E-value=0.32 Score=50.38 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 176 KNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....+|+|+|.+|+|||||+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999987655
No 448
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.04 E-value=0.14 Score=50.33 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999998765
No 449
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.99 E-value=0.11 Score=55.53 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|+|+|.+|+||||+|..++...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988776
No 450
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.95 E-value=0.16 Score=45.77 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999987653
No 451
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.90 E-value=0.17 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|.|-||+||||+|..++...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHH
Confidence 688889999999999999998877
No 452
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.88 E-value=0.13 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988664
No 453
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.86 E-value=0.2 Score=54.50 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=30.9
Q ss_pred cchhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 158 VGQEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.|.+-.+.+.+..........+|.+.|+.|+||||+|++++...
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 344444444444432212244789999999999999999999988
No 454
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.86 E-value=0.31 Score=50.34 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 167 VWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+++-+.-.-....+++|+|.+|+|||||...+....
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 444443222356899999999999999999998654
No 455
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.80 E-value=0.18 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|.|.+|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998776
No 456
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.77 E-value=0.15 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.+++|+|..|+|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 457
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.72 E-value=0.18 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.--|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999987653
No 458
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.71 E-value=0.21 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 459
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.71 E-value=0.18 Score=47.05 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 460
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.69 E-value=0.19 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-.++|.|++|+||||+|+.+....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 461
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.57 E-value=0.21 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34799999999999999999997654
No 462
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.42 E-value=0.25 Score=45.29 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999987643
No 463
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.39 E-value=0.65 Score=49.00 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=32.6
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhhccc---cCCCCEEEEEEe
Q 004021 166 RVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQ---QHNFDVVIWAAV 217 (779)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~---~~~F~~~~wv~v 217 (779)
.|-+.|..+=..-.++.|+|.+|+|||||+..++-..... ...-..++|++.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 3444443332234799999999999999999775332010 112356888877
No 464
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.36 E-value=0.2 Score=52.44 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998876
No 465
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.28 E-value=0.38 Score=47.69 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 164 LPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
+.++.+.+.........|+|+|.+|+|||||...+....
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444555443355678999999999999999988654
No 466
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.27 E-value=0.26 Score=45.56 Aligned_cols=25 Identities=44% Similarity=0.547 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988654
No 467
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.16 E-value=0.21 Score=45.14 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-|+|+|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999987653
No 468
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.14 E-value=0.19 Score=45.90 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.--|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3568999999999999999987643
No 469
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.07 E-value=0.25 Score=47.24 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999988754
No 470
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.01 E-value=0.15 Score=47.86 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCccEEEcccc-cccccccCcccccccccccccccchhhcccccCceeeecCCcccc-----cchhhccCccCcEeeccC
Q 004021 495 EGAKRISLMAN-EIESLSEIPTLLSLRRNDSLTELPSRISSLVSLHHLDLSLTHIRG-----LPQELKALEKLRYLNLEY 568 (779)
Q Consensus 495 ~~lr~l~l~~~-~~~~l~~~~~lL~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~l~~ 568 (779)
..++.|+++++ .|..- ....+-+.+..=++|+.|+|++|.|.. +-..+..=+.|++|+|++
T Consensus 41 ~~L~~L~L~~nn~igd~-------------ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKE-------------RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp SSCCEEECTTCCSSCHH-------------HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred CCccEEECCCCCCCCHH-------------HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Q ss_pred CcCCC-----CCchhhhcCCccCcEeeeccc---cCCCcccccCCccCCCchhhHHhhcCCCCCCceeEEeec
Q 004021 569 THYLS-----IIPHQLISGFLKLEVLRLLEC---GSEGVTKEEGNVLCDDAEPLMRELLGLKRLNVLSWSFRS 633 (779)
Q Consensus 569 ~~~l~-----~lp~~~i~~L~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 633 (779)
| .++ .+-.. +..-+.|++|++++| .+.. .........|..-+.|+.|+++.+.
T Consensus 108 N-~Ig~~Ga~ala~a-L~~N~tL~~L~L~n~~~~~ig~----------~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 108 N-FLTPELLARLLRS-TLVTQSIVEFKADNQRQSVLGN----------QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp S-BCCHHHHHHHHHH-TTTTCCCSEEECCCCSSCCCCH----------HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred C-cCCHHHHHHHHHH-HhhCCceeEEECCCCcCcCcCH----------HHHHHHHHHHHhCCCcCeEeccCCC
No 471
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.98 E-value=0.21 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 472
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.94 E-value=0.24 Score=54.41 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
...+|.++|++|.||||+|+.++...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 473
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.91 E-value=0.19 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
.+++|+|..|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998653
No 474
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.87 E-value=0.23 Score=44.96 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987643
No 475
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.86 E-value=20 Score=36.91 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|+|+|.+|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55789999999999999999987643
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.84 E-value=0.14 Score=50.84 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
....|+|.|..|+||||+|+.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999987765
No 477
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.78 E-value=0.23 Score=45.12 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
--|+|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999987653
No 478
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.76 E-value=0.22 Score=46.19 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.--|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987653
No 479
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.75 E-value=0.43 Score=47.50 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=28.4
Q ss_pred hHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 163 LLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+.++.+.+.........|.++|.+|+|||||...+....
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444444443345688999999999999999988654
No 480
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.75 E-value=0.23 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 481
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.73 E-value=0.23 Score=46.43 Aligned_cols=24 Identities=42% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
--|.|+|.+|+|||||.+.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999998776654
No 482
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.66 E-value=0.45 Score=51.55 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 160 QEKLLPRVWRCITDQQKNRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+.++.+.+.+..++ +.+.|.|.+|+||||++..+....
T Consensus 30 Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444455555555542 389999999999999999998877
No 483
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.63 E-value=0.27 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998764
No 484
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.62 E-value=0.24 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 004021 180 IIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 180 vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987654
No 485
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.62 E-value=0.24 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
--|+|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999987654
No 486
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.59 E-value=0.23 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
--|+|+|.+|+|||||...+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999988643
No 487
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.58 E-value=0.24 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
.--|+|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999877654
No 488
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.58 E-value=0.24 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNN 201 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~ 201 (779)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998764
No 489
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.58 E-value=0.24 Score=44.66 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999998887543
No 490
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.57 E-value=0.26 Score=46.67 Aligned_cols=26 Identities=35% Similarity=0.289 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..-.|+|+|.+|+|||||...+.+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578899999999999998887653
No 491
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.57 E-value=0.22 Score=47.85 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998765
No 492
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.55 E-value=0.25 Score=44.55 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 004021 181 IGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 181 i~I~G~gGvGKTtLA~~v~~~~ 202 (779)
|+|+|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999987643
No 493
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.54 E-value=0.27 Score=45.80 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 179 GIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 179 ~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.++.|+|..|+||||++..++++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997776655
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.53 E-value=0.29 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.++.|+|.+|+|||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998764
No 495
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.51 E-value=0.27 Score=50.90 Aligned_cols=26 Identities=38% Similarity=0.370 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+++.+.|.||+||||+|..++...
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999988776
No 496
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.43 E-value=0.28 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|+|.|+.|+||||+|+.++...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999987
No 497
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.38 E-value=0.23 Score=49.98 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34699999999999999999997654
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.36 E-value=0.22 Score=51.10 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 177 NRGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 56899999999999999999998653
No 499
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.34 E-value=0.27 Score=45.06 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
.--|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3468999999999999999987643
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.34 E-value=0.47 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 004021 178 RGIIGLYGIGGVGKTTLLKQVNNNF 202 (779)
Q Consensus 178 ~~vi~I~G~gGvGKTtLA~~v~~~~ 202 (779)
..+|.|-|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
Done!