BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004022
(779 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 411 NMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 470
N L SLPELP L+YL D + L +LP LP L+ LD+ N L LPELP L+Y+N
Sbjct: 90 NALISLPELPASLEYLDACDNR-LSTLPELPASLKHLDVDN-NQLTXLPELPALLEYINA 147
Query: 471 EDCNMXXXXXXXXXXXXXXTVRNCNRLQSLPEILLCLQELDASV 514
D N +VRN N+L LPE+ L+ LD S
Sbjct: 148 -DNNQLTXLPELPTSLEVLSVRN-NQLTFLPELPESLEALDVST 189
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 152/360 (42%), Gaps = 78/360 (21%)
Query: 153 GCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQS---AIEEVPSSIEC 209
G SL P +L + + C +L E P++ + L + + A+ ++P +E
Sbjct: 82 GLSSLPELPPHLESLV------ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135
Query: 210 L----TDLEVL-DLRGCKRLKRISTSFCKLRSLVTL------ILLGCLNLEHFPEILEKM 258
L LE L +L+ LK I L+ L L I G LE PE L+ +
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNL 194
Query: 259 EHLKRIYSDRTPITELPS---SFENL-PGLEVLFVEDCSKLDNLPDNIGXXXXXXXXXXX 314
L IY+D + +LP S E++ G +L E+ +L NLP
Sbjct: 195 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL--EELPELQNLP--------------- 237
Query: 315 XXXXXXXXXXVALSNMLRSLDSSHCKGLESFP--RTFLLGL----SAMGLLHISD---YA 365
A +N+L++L LE+ +L L ++ L +S+
Sbjct: 238 -----FLTTIYADNNLLKTL-PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291
Query: 366 VREIPQEIAYLS--------------SLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFN 411
+ E+P + YL+ SLE L +S N LPA+ ++ +L + FN
Sbjct: 292 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL----IASFN 347
Query: 412 MLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLE 471
L +PELP LK LH ++ L+ P +P +E DL + L +PELP L+ L++E
Sbjct: 348 HLAEVPELPQNLKQLH-VEYNPLREFPDIPESVE--DLRMNSHLAEVPELPQNLKQLHVE 404
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 342 LESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQ 401
LE P L S + ++ + + +++++P SLE + N E LP + + +
Sbjct: 143 LEKLPE--LQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEELPEL-QNLPF 196
Query: 402 LRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVL---PFCLESLDLTGCNMLRSL 458
L I+ D N L+ LP+LPL L+ + + +L+ LP L PF + N+L++L
Sbjct: 197 LTAIYA-DNNSLKKLPDLPLSLESI-VAGNNILEELPELQNLPFL--TTIYADNNLLKTL 252
Query: 459 PELPLCLQYLNLED 472
P+LP L+ LN+ D
Sbjct: 253 PDLPPSLEALNVRD 266
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 434 LQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMXXXXXXXXXXXXXXTVRN 493
L SLP LP LESL + CN L LPELP L+ L L D N V N
Sbjct: 83 LSSLPELPPHLESL-VASCNSLTELPELPQSLKSL-LVDNNNLKALSDLPPLLEYLGVSN 140
Query: 494 CNRLQSLPEI----LLCLQELDASVLEKLSKHSPDLQW 527
N+L+ LPE+ L + ++D + L+KL P L++
Sbjct: 141 -NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 177
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 32/151 (21%)
Query: 406 HLEDF----NMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTG---------- 451
HLE N L LPELP LK L L+D L++L LP LE L ++
Sbjct: 92 HLESLVASCNSLTELPELPQSLKSL-LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150
Query: 452 -----------CNMLRSLPELPLCLQYLNLEDCNMXXXXXXXXXXXXXXTVRNCNRLQSL 500
N L+ LP+LP L+++ + + + N L+ L
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL 210
Query: 501 PEILLCLQELDA--SVLEKLSKHSPDLQWAP 529
P++ L L+ + A ++LE+L P+LQ P
Sbjct: 211 PDLPLSLESIVAGNNILEEL----PELQNLP 237
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 89 LPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWE 130
LP+ L+ LH +T PLR P P+++ +L + +V P+E
Sbjct: 394 LPQNLKQLHVETNPLREFPD--IPESVEDLRMNSERVVDPYE 433
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 142 NFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIE 201
N YL+A S +SL P +L +N S LIE P + ++ RL + +
Sbjct: 298 NLYYLNA-SSNEIRSLCDLPPSLE-----ELNVSNN-KLIELPALPPRLERLIASFNHLA 350
Query: 202 EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL 261
EVP + L L V + + I S LR +N H E+ E ++L
Sbjct: 351 EVPELPQNLKQLHV-EYNPLREFPDIPESVEDLR----------MN-SHLAEVPELPQNL 398
Query: 262 KRIYSDRTPITE---LPSSFENL 281
K+++ + P+ E +P S E+L
Sbjct: 399 KQLHVETNPLREFPDIPESVEDL 421
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 89/233 (38%), Gaps = 38/233 (16%)
Query: 243 LGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI 302
L + L FP+ ++ HL+ D + ELP + + GLE L + + L LP +I
Sbjct: 88 LRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASI 146
Query: 303 GXXXXXXXXXXXXXXXXXXXXXVALSNMLRSLDSSHCKGLESFPRTFL--------LGLS 354
N LR L C L P GL
Sbjct: 147 ASL-----------------------NRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 355 AMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ 414
+ L + +R +P IA L +L+ L + + +L I + +L + L L+
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 415 SLPEL---PLCLKYLHLIDCKMLQSLPV---LPFCLESLDLTGCNMLRSLPEL 461
+ P + LK L L DC L +LP+ LE LDL GC L LP L
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 67/170 (39%), Gaps = 13/170 (7%)
Query: 135 CVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLY 194
+P+SI + L LS + C L P L + VNL L
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPL-ASTDASGEHQGLVNL----------QSLR 189
Query: 195 LGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI 254
L + I +P+SI L +L+ L +R L + + L L L L GC L ++P I
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 255 LEKMEHLKR-IYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG 303
LKR I D + + LP L LE L + C L LP I
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTS 230
TI+ + L + Q + L L ++ + +P+SI L L L +R C L +
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 231 FCKL------RSLVTL--ILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLP 282
+ LV L + L + P + +++LK + +P++ L + +LP
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229
Query: 283 GLEVLFVEDCSKLDNLPDNIG 303
LE L + C+ L N P G
Sbjct: 230 KLEELDLRGCTALRNYPPIFG 250
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 377 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQS 436
S L+ L +S N SLP + ++ +L + N L SLP LP LK L ++ L S
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKEL-IVSGNRLTS 235
Query: 437 LPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 470
LPVLP L+ L ++G N L SLP LP L L++
Sbjct: 236 LPVLPSELKELMVSG-NRLTSLPMLPSGLLSLSV 268
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 359 LHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP- 417
L +S+ + I I L LYL+GN+ LPA IK +S LR + L N L SLP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPA 287
Query: 418 ELPLC--LKYLHLIDCKMLQSLP 438
EL C LKY + D M+ +LP
Sbjct: 288 ELGSCFQLKYFYFFD-NMVTTLP 309
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 25/101 (24%)
Query: 190 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249
+TRLYL +++ E+P+ I+ L++L VLDL S +L SL L C L+
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDL-----------SHNRLTSLPAE-LGSCFQLK 296
Query: 250 HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVE 290
+F Y +T LP F NL L+ L VE
Sbjct: 297 YF-------------YFFDNMVTTLPWEFGNLCNLQFLGVE 324
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 257 KMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG 303
K + L R+Y + +TELP+ +NL L VL + ++L +LP +G
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELG 290
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 335 DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP- 393
D +G++ P L L L IS A++E L++L L L+GN +SLP
Sbjct: 52 DIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKE-------LTNLTYLILTGNQLQSLPN 102
Query: 394 AIIKQMSQLRFIHLEDFNMLQSLPELPL----CLKYLHLIDCKMLQSLPVLPF----CLE 445
+ +++ L+ + L + N LQSLP+ L YL+L LQSLP F L
Sbjct: 103 GVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLT 160
Query: 446 SLDLTGCNMLRSLPE 460
LDL+ N L+SLPE
Sbjct: 161 ELDLS-YNQLQSLPE 174
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 335 DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP- 393
D +G++ P L L L IS A++E L++L L L+GN +SLP
Sbjct: 52 DIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKE-------LTNLTYLILTGNQLQSLPN 102
Query: 394 AIIKQMSQLRFIHLEDFNMLQSLPELPL----CLKYLHLIDCKMLQSLPVLPF----CLE 445
+ +++ L+ + L + N LQSLP+ L YL+L LQSLP F L
Sbjct: 103 GVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLYLYH-NQLQSLPKGVFDKLTNLT 160
Query: 446 SLDLTGCNMLRSLPE 460
LDL N L+SLPE
Sbjct: 161 RLDLDN-NQLQSLPE 174
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 342 LESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP-AIIKQM 399
L+S P L+ + L +S ++ +P + L+ L ILYL N +SLP + ++
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99
Query: 400 SQLRFIHLEDFNMLQSLPE 418
+QL+ + L D N L+S+P+
Sbjct: 100 TQLKELAL-DTNQLKSVPD 117
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 353 LSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDF 410
L+ +G L +++ + +P + +L+ L+ LYL GN +SLP + ++++L+ + L +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NT 140
Query: 411 NMLQSLP 417
N LQS+P
Sbjct: 141 NQLQSIP 147
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 353 LSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDF 410
L+ +G L +++ + +P + +L+ L+ LYL GN +SLP + ++++L+ + L +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NT 140
Query: 411 NMLQSLP 417
N LQS+P
Sbjct: 141 NQLQSIP 147
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 352 GLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 409
GL ++ L + D + +P Q YLS L L+L N ES+P+ ++ LR + L +
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 410 FNMLQSLPELP----LCLKYLHLIDCKMLQSLPVLPFC--LESLDLTG 451
L+ + E + L+YL+L C L+ +P L LE L+L+G
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSG 187
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 352 GLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 409
GL ++ L + D + +P Q YLS L L+L N ES+P+ ++ LR + L +
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 410 FNMLQSLPELP----LCLKYLHLIDCKMLQSLPVLPFC--LESLDLTG 451
L+ + E + L+YL+L C L+ +P L LE L+L+G
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSG 187
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 17/128 (13%)
Query: 359 LHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFNMLQSL 416
L + +++ +P + L+SL LYL GN +SLP + +++ L +++L N LQSL
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSL 91
Query: 417 P----ELPLCLKYLHLIDCKMLQSLPVLPF----CLESLDLTGCNMLRSLPELPL----C 464
P + LK L L + LQSLP F L+ L L N L+S+P+
Sbjct: 92 PNGVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTS 149
Query: 465 LQYLNLED 472
LQY+ L D
Sbjct: 150 LQYIWLHD 157
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 352 GLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 409
GL+ + L + D + IP YLS L+ L+L N ES+P+ ++ LR + L +
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 410 FNMLQSLPELPL----CLKYLHLIDCKMLQSLPVLPFC-LESLDLTG 451
L + E L+YL+L C + + + P L+ LDL+G
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 390
LR LD K L GLS + L+++ +REIP + L L+ L LSGN+
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLS 220
Query: 391 SL-PAIIKQM----------SQLRFIHLEDFNMLQSLPELPLCLKYLHLI 429
++ P + + SQ++ I F+ LQSL E+ L L L+
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNF 389
L LD H + + L L + L IS R I LSSLE+L ++GN+F
Sbjct: 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481
Query: 390 ES--LPAIIKQMSQLRFIHLED----------FNMLQSLPELPLCLKYLHLIDC---KML 434
+ LP I ++ L F+ L FN L SL L + +D K L
Sbjct: 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541
Query: 435 QSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 470
SL VL + SL+ + + L P L +LNL
Sbjct: 542 NSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNL 574
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 14/95 (14%)
Query: 376 LSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLID 430
L+ L +LYL+ N ++LPA I K++ L + + D N LQ+LP + + L L L D
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRL-D 117
Query: 431 CKMLQSLPVLPFCLESL-DLT----GCNMLRSLPE 460
L+SLP P +SL LT G N L+SLP+
Sbjct: 118 RNQLKSLP--PRVFDSLTKLTYLSLGYNELQSLPK 150
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNF 389
L LD H + + L L + L IS R I LSSLE+L ++GN+F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 390 ES--LPAIIKQMSQLRFIHLED----------FNMLQSLPELPLCLKYLHLIDC---KML 434
+ LP I ++ L F+ L FN L SL L + +D K L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517
Query: 435 QSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 470
SL VL + SL+ + + L P L +LNL
Sbjct: 518 NSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNL 550
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 376 LSSLEILYLSGNNFES--LPAIIKQMSQLRFIHLED----------FNMLQSLPELPLCL 423
LSSLE+L ++GN+F+ LP I ++ L F+ L FN L SL L +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 424 KYLHLIDC---KMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 470
+D K L SL VL + SL+ + + L P L +LNL
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNL 255
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLP--SMSTEEQLSYSKVQLPNG 85
FLDLS+ + L P AF ++S+L++ F+ ++ P +++ + L YS +
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Query: 86 ----LDYLPKKLRYLH 97
L + P L +L+
Sbjct: 239 KKQELQHFPSSLAFLN 254
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEILYLSGNN 388
+L LD S L T GL + LH+ ++E+ P L++L+ LYL NN
Sbjct: 80 LLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNN 139
Query: 389 FESLP-AIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQ 435
++LP + + L + L N + S+PE + LH +D +L
Sbjct: 140 LQALPDNTFRDLGNLTHLFLHG-NRIPSVPE--HAFRGLHSLDRLLLH 184
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 369 IPQEIAYLSSLEILYLSGNN--FESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYL 426
IP +A L L LY+ G N +P I +++QL ++++ N+ ++P+ +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 427 HLIDCKMLQSLPVLPFCLESL 447
+D LP + SL
Sbjct: 128 VTLDFSYNALSGTLPPSISSL 148
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAII 396
P FL GLS + +L++ EIP E+ L L+I+ L NN +LPA +
Sbjct: 533 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 584
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAII 396
P FL GLS + +L++ EIP E+ L L+I+ L NN +LPA +
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAII 396
P FL GLS + +L++ EIP E+ L L+I+ L NN +LPA +
Sbjct: 538 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 589
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 356 MGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLED 409
+ +L + + + IP+++ +L +L+ L ++ N +S+P + +++ L++I L D
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 368 EIPQEIAYLSSLEILYLSGNNFES-LPAIIKQMSQLRFIHLEDFNMLQSLPE 418
EIPQE+ Y+ +LE L L N+ +P+ + + L +I L + + +P+
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 368 EIPQEIAYLSSLEILYLSGNNFES-LPAIIKQMSQLRFIHLEDFNMLQSLPE 418
EIPQE+ Y+ +LE L L N+ +P+ + + L +I L + + +P+
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 352 GLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 409
GL+++ L + D + IP YLS L L+L N ES+P+ ++ L + L +
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 410 FNMLQSLPELP----LCLKYLHLIDCKMLQSLPVLPFC-LESLDLTG 451
L+ + E LKYL+L C + + P LE L+++G
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 341 GLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP 393
GL+ GL+A+ L++ D A++ +P + L +L L+L GN S+P
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 168
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 341 GLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP 393
GL+ GL+A+ L++ D A++ +P + L +L L+L GN S+P
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPLC-LKYLHLIDCKMLQ 435
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 180
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNF 389
L LD H + + L L + L IS R I LSSLE+L ++GN+F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 390 ES--LPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLID--CKMLQSLP 438
+ LP I ++ L F+ L + Q P L L +++ L+S+P
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPLC-LKYLHLIDCKMLQ 435
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 180
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 79 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHLIDCKMLQ 435
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 181
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHLIDCKMLQ 435
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 180
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHLIDCKMLQ 435
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 180
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLP 417
N ++L P ++ +L + L + N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN-NQLTELP 164
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLP 417
N ++L P ++ +L + L + N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN-NQLTELP 164
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLP 417
N ++L P ++ +L + L + N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN-NQLTELP 164
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 330 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 386
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 387 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLP 417
N ++L P ++ +L + L + N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN-NQLTELP 164
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 199 AIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM 258
+E+VP + D +LDL+ K + F L++L TLIL+ + P +
Sbjct: 42 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 259 EHLKRIYSDRTPITELPSSF 278
L+R+Y + + ELP
Sbjct: 100 VKLERLYLSKNQLKELPEKM 119
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 199 AIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM 258
+E+VP + D +LDL+ K + F L++L TLIL+ + P +
Sbjct: 42 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 259 EHLKRIYSDRTPITELPSSF 278
L+R+Y + + ELP
Sbjct: 100 VKLERLYLSKNQLKELPEKM 119
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 376 LSSLEILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQSLP--ELPLCLKYLHLIDCK 432
LS L++LYL+ N SL P + ++ LR + L N L L +LP L+ L + +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQ 537
Query: 433 MLQSLPVLPFCLESLDLT 450
+L P + L LD+T
Sbjct: 538 LLAPNPDVFVSLSVLDIT 555
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,708,225
Number of Sequences: 62578
Number of extensions: 876060
Number of successful extensions: 2071
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1957
Number of HSP's gapped (non-prelim): 119
length of query: 779
length of database: 14,973,337
effective HSP length: 106
effective length of query: 673
effective length of database: 8,340,069
effective search space: 5612866437
effective search space used: 5612866437
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)